| Tool | Name of Tool | Publications | Google Scholar Citations |
|---|---|---|---|
 |
BiGG Models | Nucleic Acids Res. 2015 Bionformatics 2010 |
1,040 |
 |
Cytoscape | Genome Research 2003 | 21,175 |
 |
Dual-CRISPR Screen Analysis Pipeline | Nature 2017 | 212 |
 |
Emperor | Gigascience 2013 | 734 |
 |
ESCHER | PLoS Computational 2015 | 188 |
 |
Flye | Nature Biotechnology 2019 |
361 |
 |
GenePattern | Nature Genetics 2006 | 1,788 |
 |
GNPS | Nature Biotechnology 2016 | 1,088 |
 |
'ili | Nature Protocols 2018 | 48 |
 |
KeLP (Kernel Lattice Parallelism) | Journal of Parallel and Distributed Computing 1998 | 96 |
 |
MASS Toolbox | Nature Biotechnology 2016 | 121 |
 |
Mass Spectrometry Interactive Virtual Environment |
Unpublished (massive.ucsd.edu) | 686 |
 |
NDEx | Cell Systems 2015 Bioinformatics 2017 Cancer Research 2017 |
143 |
 |
The Cobra Toolbox | Nature Genetics 2005 | 2,269 |
 |
Qiime | Nature Methods 2010 | 23,024 |
 |
Qiime2 | PeerJ Preprints 2018 | 1,874 |
 |
Qiita | Nature Methods 2018 | 474 |
 |
SPAde | J Comput BioL 2012 | 10,784 |
 |
metaSPAde | Genome Res 2017 | 838 |
| TOTAL GOOGLE SCHOLAR CITATIONS | 66,957 | ||
Last Updated: January 4, 2021
