ArticleAuthorsJournalDate
A simple rule for predicting function of microbial communities.Sergey KryazhimskiyCell2024-06-08
Effects of intensive lifestyle changes on the progression of mild cognitive impairment or early dementia due to Alzheimer's disease: a randomized, controlled clinical trial.Dean Ornish, Catherine Madison, Miia Kivipelto, Colleen Kemp, Charles E McCulloch, Douglas Galasko, Jon Artz, Dorene Rentz, Jue Lin, Kim Norman, Anne Ornish, Sarah Tranter, Nancy DeLamarter, Noel Wingers, Carra Richling, Rima Kaddurah-Daouk, Rob Knight, Daniel McDonald, Lucas Patel, Eric Verdin, Rudolph E Tanzi, Steven E ArnoldAlzheimer's Research & Therapy2024-06-07
The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions.Christopher Dalldorf, Kevin Rychel, Richard Szubin, Ying Hefner, Arjun Patel, Daniel C Zielinski, Bernhard O PalssonMSystems2024-06-03
Endogenous ethanol production in health and disease.Abraham S Meijnikman, Max Nieuwdorp, Bernd SchnablNature Reviews. Gastroenterology & Hepatology2024-06-03
Outcomes of SARS-CoV-2 and seasonal viruses among 2 million adults hospitalized for severe acute respiratory infection during the COVID-19 pandemic in Brazil.Lilian M Diniz, Cristiane S Dias, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Clara C Pinhati, Stella C Galante, Isadora O Yan, Hercílio Martelli-Júnior, Eduardo A OliveiraThe Journal Of Infectious Diseases2024-05-31
Exploring roles of the chitinase ChiC in modulating virulence phenotypes.Per Kristian Thorén Edvardsen, Fatemeh Askarian, Raymond Zurich, Victor Nizet, Gustav Vaaje-KolstadMicrobiology Spectrum2024-05-31
Affinity gaps among B cells in germinal centers drive the selection of MPER precursors.Rashmi Ray, Torben Schiffner, Xuesong Wang, Yu Yan, Kimmo Rantalainen, Chang-Chun David Lee, Shivang Parikh, Raphael A Reyes, Gordon A Dale, Ying-Cing Lin, Simone Pecetta, Sophie Giguere, Olivia Swanson, Sven Kratochvil, Eleonora Melzi, Ivy Phung, Lisa Madungwe, Oleksandr Kalyuzhniy, John Warner, Stephanie R Weldon, Ryan Tingle, Edward Lamperti, Kathrin H Kirsch, Nicole Phelps, Erik Georgeson, Yumiko Adachi, Michael Kubitz, Usha Nair, Shane Crotty, Ian A Wilson, William R Schief, Facundo D BatistaNature Immunology2024-05-30
Vaccination induces broadly neutralizing antibody precursors to HIV gp41.Torben Schiffner, Ivy Phung, Rashmi Ray, Adriana Irimia, Ming Tian, Olivia Swanson, Jeong Hyun Lee, Chang-Chun D Lee, Ester Marina-Zárate, So Yeon Cho, Jiachen Huang, Gabriel Ozorowski, Patrick D Skog, Andreia M Serra, Kimmo Rantalainen, Joel D Allen, Sabyasachi Baboo, Oscar L Rodriguez, Sunny Himansu, Jianfu Zhou, Jonathan Hurtado, Claudia T Flynn, Katherine McKenney, Colin Havenar-Daughton, Swati Saha, Kaitlyn Shields, Steven Schulze, Melissa L Smith, Chi-Hui Liang, Laura Toy, Simone Pecetta, Ying-Cing Lin, Jordan R Willis, Fabian Sesterhenn, Daniel W Kulp, Xiaozhen Hu, Christopher A Cottrell, Xiaoya Zhou, Jennifer Ruiz, Xuesong Wang, Usha Nair, Kathrin H Kirsch, Hwei-Ling Cheng, Jillian Davis, Oleksandr Kalyuzhniy, Alessia Liguori, Jolene K Diedrich, Julia T Ngo, Vanessa Lewis, Nicole Phelps, Ryan D Tingle, Skye Spencer, Erik Georgeson, Yumiko Adachi, Michael Kubitz, Saman Eskandarzadeh, Marc A Elsliger, Rama R Amara, Elise Landais, Bryan Briney, Dennis R Burton, Diane G Carnathan, Guido Silvestri, Corey T Watson, John R Yates, James C Paulson, Max Crispin, Gevorg Grigoryan, Andrew B Ward, Devin Sok, Frederick W Alt, Ian A Wilson, Facundo D Batista, Shane Crotty, William R SchiefNature Immunology2024-05-30
Microbiologist in the Clinic: Postmenopausal Woman with Chronic OAB and Positive Urine Culture.Linda Brubaker, Harry Horsley, Rajvinder Khasriya, Alan J WolfeInternational Urogynecology Journal2024-05-27
Comparative Metabolomics and Microbiome Analysis of Ethanol versus OMNImet/gene•GUT Fecal Stabilization.Heidi Isokääntä, Lucas Pinto da Silva, Naama Karu, Teemu Kallonen, Anna-Katariina Aatsinki, Thomas Hankemeier, Leyla Schimmel, Edgar Diaz, Tuulia Hyötyläinen, Pieter C Dorrestein, Rob Knight, Matej Orešič, Rima Kaddurah-Daouk, Alex M Dickens, Santosh LamichhaneAnalytical Chemistry2024-05-23
Environmental metabolomics characterization of modern stromatolites and annotation of ibhayipeptolides.George F Neuhaus, Allegra T Aron, Eric W Isemonger, Daniel Petras, Samantha C Waterworth, Luthando S Madonsela, Emily C Gentry, Xavier Siwe Noundou, Jarmo-Charles J Kalinski, Alexandros Polyzois, Julius C Habiyaremye, Margaret A Redick, Jason C Kwan, Rosemary A Dorrington, Pieter C Dorrestein, Kerry L McPhailPloS One2024-05-23
The Prospect of Biomimetic Immune Cell Membrane-Coated Nanomedicines for Treatment of Serious Bacterial Infections and Sepsis.Alexandria Hoffman, Victor NizetThe Journal Of Pharmacology And Experimental Therapeutics2024-05-21
Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates.Jon M Steichen, Ivy Phung, Eugenia Salcedo, Gabriel Ozorowski, Jordan R Willis, Sabyasachi Baboo, Alessia Liguori, Christopher A Cottrell, Jonathan L Torres, Patrick J Madden, Krystal M Ma, Henry J Sutton, Jeong Hyun Lee, Oleksandr Kalyuzhniy, Joel D Allen, Oscar L Rodriguez, Yumiko Adachi, Tina-Marie Mullen, Erik Georgeson, Michael Kubitz, Alison Burns, Shawn Barman, Rohini Mopuri, Amanda Metz, Tasha K Altheide, Jolene K Diedrich, Swati Saha, Kaitlyn Shields, Steven E Schultze, Melissa L Smith, Torben Schiffner, Dennis R Burton, Corey T Watson, Steven E Bosinger, Max Crispin, John R Yates, James C Paulson, Andrew B Ward, Devin Sok, Shane Crotty, William R SchiefScience (New York, N.Y.)2024-05-17
Associations of plant-based foods, red and processed meat, and dairy with gut microbiome in Finnish adults.Mirkka Maukonen, Kari K Koponen, Aki S Havulinna, Niina E Kaartinen, Teemu Niiranen, Guillaume Méric, Anne-Maria Pajari, Rob Knight, Veikko Salomaa, Satu MännistöEuropean Journal Of Nutrition2024-05-16
Integrating clinical research into electronic health record workflows to support a learning health system.Nicole H Goldhaber, Marni B Jacobs, Louise C Laurent, Rob Knight, Wenhong Zhu, Dean Pham, Allen Tran, Sandip P Patel, Michael Hogarth, Christopher A LonghurstJAMIA Open2024-05-15
Unveiling ecological/evolutionary insights in HIV viral load dynamics: Allowing random slopes to observe correlational changes to CpG-contents and other molecular and clinical predictors.Rocío Carrasco-Hernández, Humberto Valenzuela-Ponce, Maribel Soto-Nava, Claudia García-Morales, Margarita Matías-Florentino, Joel O Wertheim, Davey M Smith, Gustavo Reyes-Terán, Santiago Ávila-RíosEpidemics2024-05-14
The Urinary Microbiome: Improving Diagnostics and Management of Urinary Tract Infections in Adult Females.Toby C Chai, Alan J Wolfe, Linda BrubakerInfectious Disease Clinics Of North America2024-05-11
Gut microbiota, blood metabolites, and left ventricular diastolic dysfunction in US Hispanics/Latinos.Kai Luo, Alkis Taryn, Eun-Hye Moon, Brandilyn A Peters, Scott D Solomon, Martha L Daviglus, Mayank M Kansal, Bharat Thyagarajan, Marc D Gellman, Jianwen Cai, Robert D Burk, Rob Knight, Robert C Kaplan, Susan Cheng, Carlos J Rodriguez, Qibin Qi, Bing YuMicrobiome2024-05-10
Neutrophil Extracellular Traps (NETs): An Emerging Therapeutic Target to Improve Infectious Diseases Outcomes.Angela Meier, George Sakoulas, Victor Nizet, Erlinda R UlloaThe Journal Of Infectious Diseases2024-05-10
Temporal and spatial diversity and abundance of cryptophytes in San Diego coastal waters.Tristin Rammel, Maitreyi Nagarkar, Brian PalenikJournal Of Phycology2024-05-09
Researching COVID to enhance recovery (RECOVER) pediatric study protocol: Rationale, objectives and design.Rachel S Gross, Tanayott Thaweethai, Erika B Rosenzweig, James Chan, Lori B Chibnik, Mine S Cicek, Amy J Elliott, Valerie J Flaherman, Andrea S Foulkes, Margot Gage Witvliet, Richard Gallagher, Maria Laura Gennaro, Terry L Jernigan, Elizabeth W Karlson, Stuart D Katz, Patricia A Kinser, Lawrence C Kleinman, Michelle F Lamendola-Essel, Joshua D Milner, Sindhu Mohandas, Praveen C Mudumbi, Jane W Newburger, Kyung E Rhee, Amy L Salisbury, Jessica N Snowden, Cheryl R Stein, Melissa S Stockwell, Kelan G Tantisira, Moriah E Thomason, Dongngan T Truong, David Warburton, John C Wood, Shifa Ahmed, Almary Akerlundh, Akram N Alshawabkeh, Brett R Anderson, Judy L Aschner, Andrew M Atz, Robin L Aupperle, Fiona C Baker, Venkataraman Balaraman, Dithi Banerjee, Deanna M Barch, Arielle Baskin-Sommers, Sultana Bhuiyan, Marie-Abele C Bind, Amanda L Bogie, Tamara Bradford, Natalie C Buchbinder, Elliott Bueler, Hülya Bükülmez, B J Casey, Linda Chang, Maryanne Chrisant, Duncan B Clark, Rebecca G Clifton, Katharine N Clouser, Lesley Cottrell, Kelly Cowan, Viren D'Sa, Mirella Dapretto, Soham Dasgupta, Walter Dehority, Audrey Dionne, Kirsten B Dummer, Matthew D Elias, Shari Esquenazi-Karonika, Danielle N Evans, E Vincent S Faustino, Alexander G Fiks, Daniel Forsha, John J Foxe, Naomi P Friedman, Greta Fry, Sunanda Gaur, Dylan G Gee, Kevin M Gray, Stephanie Handler, Ashraf S Harahsheh, Keren Hasbani, Andrew C Heath, Camden Hebson, Mary M Heitzeg, Christina M Hester, Sophia Hill, Laura Hobart-Porter, Travis K F Hong, Carol R Horowitz, Daniel S Hsia, Matthew Huentelman, Kathy D Hummel, Katherine Irby, Joanna Jacobus, Vanessa L Jacoby, Pei-Ni Jone, David C Kaelber, Tyler J Kasmarcak, Matthew J Kluko, Jessica S Kosut, Angela R Laird, Jeremy Landeo-Gutierrez, Sean M Lang, Christine L Larson, Peter Paul C Lim, Krista M Lisdahl, Brian W McCrindle, Russell J McCulloh, Kimberly McHugh, Alan L Mendelsohn, Torri D Metz, Julie Miller, Elizabeth C Mitchell, Lerraughn M Morgan, Eva M Müller-Oehring, Erica R Nahin, Michael C Neale, Manette Ness-Cochinwala, Sheila M Nolan, Carlos R Oliveira, Onyekachukwu Osakwe, Matthew E Oster, R Mark Payne, Michael A Portman, Hengameh Raissy, Isabelle G Randall, Suchitra Rao, Harrison T Reeder, Johana M Rosas, Mark W Russell, Arash A Sabati, Yamuna Sanil, Alice I Sato, Michael S Schechter, Rangaraj Selvarangan, S Kristen Sexson Tejtel, Divya Shakti, Kavita Sharma, Lindsay M Squeglia, Shubika Srivastava, Michelle D Stevenson, Jacqueline Szmuszkovicz, Maria M Talavera-Barber, Ronald J Teufel, Deepika Thacker, Felicia Trachtenberg, Mmekom M Udosen, Megan R Warner, Sara E Watson, Alan Werzberger, Jordan C Weyer, Marion J Wood, H Shonna Yin, William T Zempsky, Emily Zimmerman, Benard P Dreyer, PloS One2024-05-07
Generation of 'semi-guided' cortical organoids with complex neural oscillations.Michael Q Fitzgerald, Tiffany Chu, Francesca Puppo, Rebeca Blanch, Miguel Chillón, Shankar Subramaniam, Alysson R MuotriNature Protocols2024-05-03
Universal digital high-resolution melting for the detection of pulmonary mold infections.Tyler Goshia, April Aralar, Nathan Wiederhold, Jeffrey D Jenks, Sanjay R Mehta, Aprajita Karmakar, Monish E S, Ankit Sharma, Haoxiang Sun, Refilwe Kebadireng, P Lewis White, Mridu Sinha, Martin Hoenigl, Stephanie I FraleyJournal Of Clinical Microbiology2024-05-02
An essential and highly selective protein import pathway encoded by nucleus-forming phage.Chase J Morgan, Eray Enustun, Emily G Armbruster, Erica A Birkholz, Amy Prichard, Taylor Forman, Ann Aindow, Wichanan Wannasrichan, Sela Peters, Koe Inlow, Isabelle L Shepherd, Alma Razavilar, Vorrapon Chaikeeratisak, Benjamin A Adler, Brady F Cress, Jennifer A Doudna, Kit Pogliano, Elizabeth Villa, Kevin D Corbett, Joe PoglianoProceedings Of The National Academy Of Sciences Of The United States Of America2024-04-30
Engineered bacterial therapeutics for detecting and treating CRC.Nicole Siguenza, Arianna Brevi, Joanna T Zhang, Arman Pabani, Abhinav Bhushan, Moumita Das, Yousong Ding, Jeff Hasty, Pradipta Ghosh, Amir ZarrinparTrends In Cancer2024-04-30
Variability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols.Samuel P Forry, Stephanie L Servetas, Jason G Kralj, Keng Soh, Michalis Hadjithomas, Raul Cano, Martha Carlin, Maria G de Amorim, Benjamin Auch, Matthew G Bakker, Thais F Bartelli, Juan P Bustamante, Ignacio Cassol, Mauricio Chalita, Emmanuel Dias-Neto, Aaron Del Duca, Daryl M Gohl, Jekaterina Kazantseva, Muyideen T Haruna, Peter Menzel, Bruno S Moda, Lorieza Neuberger-Castillo, Diana N Nunes, Isha R Patel, Rodrigo D Peralta, Adrien Saliou, Rolf Schwarzer, Samantha Sevilla, Isabella K T M Takenaka, Jeremy R Wang, Rob Knight, Dirk Gevers, Scott A JacksonScientific Reports2024-04-29
Exploring the role of neuronal-enriched extracellular vesicle miR-93 and interoception in major depressive disorder.Kaiping Burrows, Leandra K Figueroa-Hall, Jennifer L Stewart, Ahlam M Alarbi, Rayus Kuplicki, Bethany N Hannafon, Chibing Tan, Victoria B Risbrough, Brett A McKinney, Rajagopal Ramesh, Teresa A Victor, Robin Aupperle, Jonathan Savitz, T Kent Teague, Sahib S Khalsa, Martin P PaulusTranslational Psychiatry2024-04-27
Distinguishing Molecular Properties of OAT, OATP, and MRP Drug Substrates by Machine Learning.Anisha K Nigam, Jeremiah D Momper, Anupam Anand Ojha, Sanjay K NigamPharmaceutics2024-04-26
Disparities in Metabolic Syndrome and Neurocognitive Function Among Older Hispanics/Latinos with Human Immunodeficiency Virus.María J Marquine, Lily Kamalyan, Zvinka Z Zlatar, David Yassai-Gonzalez, Alán Perez-Tejada, Anya Umlauf, Tala Al-Rousan, Verónica González, Jordana Breton, Lesley A Guareña, Lilla Brody, Mariana Cherner, Ronald J Ellis, Maria Luisa Zúñiga, Dan M Mungas, Raeanne C Moore, David J Moore, Valerie Wojna, Rasheeda K Hall, Donald R Franklin, Robert K HeatonAIDS Patient Care And STDs2024-04-25
Metabolic and inflammatory perturbation of diabetes associated gut dysbiosis in people living with and without HIV infection.Kai Luo, Brandilyn A Peters, Jee-Young Moon, Xiaonan Xue, Zheng Wang, Mykhaylo Usyk, David B Hanna, Alan L Landay, Michael F Schneider, Deborah Gustafson, Kathleen M Weber, Audrey French, Anjali Sharma, Kathryn Anastos, Tao Wang, Todd Brown, Clary B Clish, Robert C Kaplan, Rob Knight, Robert D Burk, Qibin QiGenome Medicine2024-04-20
Modeling the emergence of viral resistance for SARS-CoV-2 during treatment with an anti-spike monoclonal antibody.Tin Phan, Carolin Zitzmann, Kara W Chew, Davey M Smith, Eric S Daar, David A Wohl, Joseph J Eron, Judith S Currier, Michael D Hughes, Manish C Choudhary, Rinki Deo, Jonathan Z Li, Ruy M Ribeiro, Ruian Ke, Alan S Perelson, PLoS Pathogens2024-04-18
Iron limitation of heterotrophic bacteria in the California current system tracks relative availability of organic carbon and iron.Lauren E Manck, Tyler H Coale, Brandon M Stephens, Kiefer O Forsch, Lihini I Aluwihare, Christopher L Dupont, Andrew E Allen, Katherine A BarbeauThe ISME Journal2024-04-16
Serial adaptive laboratory evolution enhances mixed carbon metabolic capacity of Escherichia coli.Kangsan Kim, Donghui Choe, Minjeong Kang, Sang-Hyeok Cho, Suhyung Cho, Ki Jun Jeong, Bernhard Palsson, Byung-Kwan ChoMetabolic Engineering2024-04-16
Improving microbial phylogeny with citizen science within a mass-market video game.Roman Sarrazin-Gendron, Parham Ghasemloo Gheidari, Alexander Butyaev, Timothy Keding, Eddie Cai, Jiayue Zheng, Renata Mutalova, Julien Mounthanyvong, Yuxue Zhu, Elena Nazarova, Chrisostomos Drogaris, Kornél Erhart, , , Amélie Brouillette, Gabriel Richard, Randy Pitchford, Sébastien Caisse, Mathieu Blanchette, Daniel McDonald, Rob Knight, Attila Szantner, Jérôme WaldispühlNature Biotechnology2024-04-15
Understanding the risks of co-exposures in a changing world: a case study of dual monitoring of the biotoxin domoic acid and Vibrio spp. in Pacific oyster.Alle A Y Lie, Amity G Zimmer-Faust, Rachel E Diner, Emily Kunselman, Zachary Daniel, Kathryn Van Artsdalen, Mariana C Salas Garcia, Jack A Gilbert, Dana Shultz, Jeff Chokry, Kylie Langlois, Jayme SmithEnvironmental Monitoring And Assessment2024-04-12
Where do the pathogens that cause surgical site infections come from?Jack A Gilbert, John AlverdyScience Translational Medicine2024-04-10
Dermal injury drives a skin to gut axis that disrupts the intestinal microbiome and intestinal immune homeostasis in mice.Tatsuya Dokoshi, Yang Chen, Kellen J Cavagnero, Gibraan Rahman, Daniel Hakim, Samantha Brinton, Hana Schwarz, Elizabeth A Brown, Alan O'Neill, Yoshiyuki Nakamura, Fengwu Li, Nita H Salzman, Rob Knight, Richard L GalloNature Communications2024-04-08
Correction: Robustness of cancer microbiome signals over a broad range of methodological variation.Gregory D Sepich-Poore, Daniel McDonald, Evguenia Kopylova, Caitlin Guccione, Qiyun Zhu, George Austin, Carolina Carpenter, Serena Fraraccio, Stephen Wandro, Tomasz Kosciolek, Stefan Janssen, Jessica L Metcalf, Se Jin Song, Jad Kanbar, Sandrine Miller-Montgomery, Robert Heaton, Rana Mckay, Sandip Pravin Patel, Austin D Swafford, Tal Korem, Rob KnightOncogene2024-04-05
Occult hepatitis B virus infection and current perspectives on global WHO 2030 eradication.Shanmugam Saravanan, Esaki M Shankar, Ramachandran Vignesh, Pitchaipillai Sankar Ganesh, Sathish Sankar, Vijayakumar Velu, Davey M Smith, Pachamuthu Balakrishnan, Dhivya Viswanathan, Rajakumar Govindasamy, Arcot R VenkateswaranJournal Of Viral Hepatitis2024-04-05
The changing metabolic landscape of bile acids - keys to metabolism and immune regulation.Ipsita Mohanty, Celeste Allaband, Helena Mannochio-Russo, Yasin El Abiead, Lee R Hagey, Rob Knight, Pieter C DorresteinNature Reviews. Gastroenterology & Hepatology2024-04-04
A phenome-wide association and Mendelian randomisation study of alcohol use variants in a diverse cohort comprising over 3 million individuals.Mariela V Jennings, José Jaime Martínez-Magaña, Natasia S Courchesne-Krak, Renata B Cupertino, Laura Vilar-Ribó, Sevim B Bianchi, Alexander S Hatoum, Elizabeth G Atkinson, Paola Giusti-Rodriguez, Janitza L Montalvo-Ortiz, Joel Gelernter, María Soler Artigas, , Sarah L Elson, Howard J Edenberg, Pierre Fontanillas, Abraham A Palmer, Sandra Sanchez-RoigeEBioMedicine2024-04-02
IL-22-dependent responses and their role during infection.Karine Melchior, Romana R Gerner, Suzana Hossain, Sean-Paul Nuccio, Cristiano Gallina Moreira, Manuela RaffatelluInfection And Immunity2024-04-01
Gut Microbiota and Blood Metabolites Related to Fiber Intake and Type 2 Diabetes.Zheng Wang, Brandilyn A Peters, Bing Yu, Megan L Grove, Tao Wang, Xiaonan Xue, Bharat Thyagarajan, Martha L Daviglus, Eric Boerwinkle, Gang Hu, Yasmin Mossavar-Rahmani, Carmen R Isasi, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin QiCirculation Research2024-03-28
Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in fish.Aaron Oliver, Sheila Podell, Linda Wegley Kelly, Wesley J Sparagon, Alvaro M Plominsky, Robert S Nelson, Lieve M L Laurens, Simona Augyte, Neil A Sims, Craig E Nelson, Eric E AllenMBio2024-03-27
Microbiota from human infants consuming secretors or non-secretors mothers' milk impacts the gut and immune system in mice.Manoj Gurung, Brent Thomas Schlegel, Dhivyaa Rajasundaram, Renee Fox, Lars Bode, Tianming Yao, Stephen R Lindemann, Tanya LeRoith, Quentin D Read, Christy Simecka, Laura Carroll, Aline Andres, Laxmi YeruvaMSystems2024-03-26
A simple solid media assay for detection of synergy between bacteriophages and antibiotics.Ethan Khong, Joseph J Oh, Julian M Jimenez, Roland Liu, Sage Dunham, Alisha Monsibais, Alison Rhoads, Pooja Ghatbale, Andrew Garcia, Ana Georgina Cobián Güemes, Alisha N Blanc, Megan Chiu, Peiting Kuo, Marissa Proost, Ahnika Kline, Saima Aslam, Robert T Schooley, Katrine Whiteson, Stephanie I Fraley, David T PrideMicrobiology Spectrum2024-03-25
Integration of polygenic and gut metagenomic risk prediction for common diseases.Yang Liu, Scott C Ritchie, Shu Mei Teo, Matti O Ruuskanen, Oleg Kambur, Qiyun Zhu, Jon Sanders, Yoshiki Vázquez-Baeza, Karin Verspoor, Pekka Jousilahti, Leo Lahti, Teemu Niiranen, Veikko Salomaa, Aki S Havulinna, Rob Knight, Guillaume Méric, Michael InouyeNature Aging2024-03-25
Inflammatory Dietary Potential Is Associated with Vitamin Depletion and Gut Microbial Dysbiosis in Early Pregnancy.Suzanne A Alvernaz, Elizabeth S Wenzel, Unnathi Nagelli, Lacey B Pezley, Bazil LaBomascus, Jack A Gilbert, Pauline M Maki, Lisa Tussing-Humphreys, Beatriz Peñalver BernabéNutrients2024-03-24
Review article: New developments in biomarkers and clinical drug development in alpha-1 antitrypsin deficiency-related liver disease.Rohit Loomba, Ginger Clark, Jeff Teckman, Veeral Ajmera, Cynthia Behling, Mark Brantly, David Brenner, Jeanine D'Armiento, Michael W Fried, Janani S Iyer, Mattias Mandorfer, Don C Rockey, Monica Tincopa, Raj Vuppalanchi, Zobair Younossi, Aleksander Krag, Alice M Turner, Pavel StrnadAlimentary Pharmacology & Therapeutics2024-03-22
Peripheral neuronal activation shapes the microbiome and alters gut physiology.Jessica A Griffiths, Bryan B Yoo, Peter Thuy-Boun, Victor J Cantu, Kelly C Weldon, Collin Challis, Michael J Sweredoski, Ken Y Chan, Taren M Thron, Gil Sharon, Annie Moradian, Gregory Humphrey, Qiyun Zhu, Justin P Shaffer, Dennis W Wolan, Pieter C Dorrestein, Rob Knight, Viviana Gradinaru, Sarkis K MazmanianCell Reports2024-03-21
Advancing the scale of synthetic biology via cross-species transfer of cellular functions enabled by iModulon engraftment.Donghui Choe, Connor A Olson, Richard Szubin, Hannah Yang, Jaemin Sung, Adam M Feist, Bernhard O PalssonNature Communications2024-03-15
Study protocol: Project 2VIDA! SARS-CoV-2 vaccine intervention delivery for adults in Southern California.Britt Skaathun, Linda Salgin, Fatima A Muñoz, Gregory A Talavera, Davey M Smith, Jamila K Stockman, Sophie E O'Bryan, Daniel Ramirez, Cynthia James-Price, Argentina E ServinFrontiers In Public Health2024-03-14
Whole-body metabolic modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimer's disease.Filippo Martinelli, Almut Heinken, Ann-Kristin Henning, Maria A Ulmer, Tim Hensen, Antonio González, Matthias Arnold, Sanjay Asthana, Kathrin Budde, Corinne D Engelman, Mehrbod Estaki, Hans-Jörgen Grabe, Margo B Heston, Sterling Johnson, Gabi Kastenmüller, Cameron Martino, Daniel McDonald, Federico E Rey, Ingo Kilimann, Olive Peters, Xiao Wang, Eike Jakob Spruth, Anja Schneider, Klaus Fliessbach, Jens Wiltfang, Niels Hansen, Wenzel Glanz, Katharina Buerger, Daniel Janowitz, Christoph Laske, Matthias H Munk, Annika Spottke, Nina Roy, Matthias Nauck, Stefan Teipel, Rob Knight, Rima F Kaddurah-Daouk, Barbara B Bendlin, Johannes Hertel, Ines ThieleScientific Reports2024-03-13
Genome-wide association study identifies 30 obsessive-compulsive disorder associated loci.Nora I Strom, Zachary F Gerring, Marco Galimberti, Dongmei Yu, Matthew W Halvorsen, Abdel Abdellaoui, Cristina Rodriguez-Fontenla, Julia M Sealock, Tim Bigdeli, Jonathan R Coleman, Behrang Mahjani, Jackson G Thorp, Katharina Bey, Christie L Burton, Jurjen J Luykx, Gwyneth Zai, Silvia Alemany, Christine Andre, Kathleen D Askland, Nerisa Banaj, Cristina Barlassina, Judith Becker Nissen, O Joseph Bienvenu, Donald Black, Michael H Bloch, Julia Boberg, Sigrid Børte, Rosa Bosch, Michael Breen, Brian P Brennan, Helena Brentani, Joseph D Buxbaum, Jonas Bybjerg-Grauholm, Enda M Byrne, Judit Cabana-Dominguez, Beatriz Camarena, Adrian Camarena, Carolina Cappi, Angel Carracedo, Miguel Casas, Maria Cristina Cavallini, Valentina Ciullo, Edwin H Cook, Jesse Crosby, Bernadette A Cullen, Elles J De Schipper, Richard Delorme, Srdjan Djurovic, Jason A Elias, Xavier Estivill, Martha J Falkenstein, Bengt T Fundin, Lauryn Garner, Chris German, Christina Gironda, Fernando S Goes, Marco A Grados, Jakob Grove, Wei Guo, Jan Haavik, Kristen Hagen, Kelly Harrington, Alexandra Havdahl, Kira D Höffler, Ana G Hounie, Donald Hucks, Christina Hultman, Magdalena Janecka, Eric Jenike, Elinor K Karlsson, Kara Kelley, Julia Klawohn, Janice E Krasnow, Kristi Krebs, Christoph Lange, Nuria Lanzagorta, Daniel Levey, Kerstin Lindblad-Toh, Fabio Macciardi, Brion Maher, Brittany Mathes, Evonne McArthur, Nathaniel McGregor, Nicole C McLaughlin, Sandra Meier, Euripedes C Miguel, Maureen Mulhern, Paul S Nestadt, Erika L Nurmi, Kevin S O'Connell, Lisa Osiecki, Olga Therese Ousdal, Teemu Palviainen, Nancy L Pedersen, Fabrizio Piras, Federica Piras, Sriramya Potluri, Raquel Rabionet, Alfredo Ramirez, Scott Rauch, Abraham Reichenberg, Mark A Riddle, Stephan Ripke, Maria C Rosário, Aline S Sampaio, Miriam A Schiele, Anne Heidi Skogholt, Laura G Sloofman G Sloofman, Jan Smit, Artigas María Soler, Laurent F Thomas, Eric Tifft, Homero Vallada, Nathanial van Kirk, Jeremy Veenstra-VanderWeele, Nienke N Vulink, Christopher P Walker, Ying Wang, Jens R Wendland, Bendik S Winsvold, Yin Yao, Hang Zhou, , , , , , Arpana Agrawal, Pino Alonso, Götz Berberich, Kathleen K Bucholz, Cynthia M Bulik, Danielle Cath, Damiaan Denys, Valsamma Eapen, Howard Edenberg, Peter Falkai, Thomas V Fernandez, Abby J Fyer, J M Gaziano, Dan A Geller, Hans J Grabe, Benjamin D Greenberg, Gregory L Hanna, Ian B Hickie, David M Hougaard, Norbert Kathmann, James Kennedy, Dongbing Lai, Mikael Landén, Stéphanie Le Hellard, Marion Leboyer, Christine Lochner, James T McCracken, Sarah E Medland, Preben B Mortensen, Benjamin M Neale, Humberto Nicolini, Merete Nordentoft, Michele Pato, Carlos Pato, David L Pauls, John Piacentini, Christopher Pittenger, Danielle Posthuma, Josep Antoni Ramos-Quiroga, Steven A Rasmussen, Margaret A Richter, David R Rosenberg, Stephan Ruhrmann, Jack F Samuels, Sven Sandin, Paul Sandor, Gianfranco Spalletta, Dan J Stein, S Evelyn Stewart, Eric A Storch, Barbara E Stranger, Maurizio Turiel, Thomas Werge, Ole A Andreassen, Anders D Børglum, Susanne Walitza, Kristian Hveem, Bjarne K Hansen, Christian P Rück, Nicholas G Martin, Lili Milani, Ole Mors, Ted Reichborn-Kjennerud, Marta Ribasés, Gerd Kvale, David Mataix-Cols, Katharina Domschke, Edna Grünblatt, Michael Wagner, John-Anker Zwart, Gerome Breen, Gerald Nestadt, Jaakko Kaprio, Paul D Arnold, Dorothy E Grice, James A Knowles, Helga Ask, Karin J Verweij, Lea K Davis, Dirk J Smit, James J Crowley, Jeremiah M Scharf, Murray B Stein, Joel Gelernter, Carol A Mathews, Eske M Derks, Manuel MattheisenMedRxiv : The Preprint Server For Health Sciences2024-03-13
Discovery of Latent Cannabichromene Cyclase Activity in Marine Bacterial Flavoenzymes.Anna C Love, Trevor N Purdy, Felix M Hubert, Ella J Kirwan, Darren C Holland, Bradley S MooreACS Synthetic Biology2024-03-08
Conjugation to Native and Nonnative Triscatecholate Siderophores Enhances Delivery and Antibacterial Activity of a β-Lactam to Gram-Negative Bacterial Pathogens.Rachel N Motz, Chuchu Guo, Artur Sargun, Gregory T Walker, Martina Sassone-Corsi, Manuela Raffatellu, Elizabeth M NolanJournal Of The American Chemical Society2024-03-08
TRIF-IFN-I pathway in -induced gastric cancer in an accelerated murine disease model and patient biopsies.Prerna Bali, Ivonne Lozano-Pope, Jonathan Hernandez, Monica V Estrada, Maripat Corr, Michael A Turner, Michael Bouvet, Christopher Benner, Marygorret ObonyoIScience2024-03-08
The underappreciated diversity of bile acid modifications.Ipsita Mohanty, Helena Mannochio-Russo, Joshua V Schweer, Yasin El Abiead, Wout Bittremieux, Shipei Xing, Robin Schmid, Simone Zuffa, Felipe Vasquez, Valentina B Muti, Jasmine Zemlin, Omar E Tovar-Herrera, Sarah Moraïs, Dhimant Desai, Shantu Amin, Imhoi Koo, Christoph W Turck, Itzhak Mizrahi, Penny M Kris-Etherton, Kristina S Petersen, Jennifer A Fleming, Tao Huan, Andrew D Patterson, Dionicio Siegel, Lee R Hagey, Mingxun Wang, Allegra T Aron, Pieter C DorresteinCell2024-03-06
Longitudinal analysis of CSF HIV RNA in untreated people with HIV: Identification of CSF controllers.Mattia Trunfio, Bin Tang, Oluwakemi Okwuegbuna, Jennifer E Iudicello, Ajay Bharti, David J Moore, Benjamin B Gelman, Susan Morgello, Payal B Patel, Leah H Rubin, Beau M Ances, Sara Gianella, Robert K Heaton, Ronald J Ellis, Scott L LetendreJournal Of Medical Virology2024-03-05
CRISPR-aided genome engineering for secondary metabolite biosynthesis in Streptomyces.Yongjae Lee, Soonkyu Hwang, Woori Kim, Ji Hun Kim, Bernhard O Palsson, Byung-Kwan ChoJournal Of Industrial Microbiology & Biotechnology2024-03-04
Bacterial diversity and chemical ecology of natural product-producing bacteria from Great Salt Lake sediment.Elijah R Bring Horvath, William J Brazelton, Min Cheol Kim, Reiko Cullum, Matthew A Mulvey, William Fenical, Jaclyn M WinterISME Communications2024-03-04
Transforming Big Data into AI-ready data for nutrition and obesity research.Diana M Thomas, Rob Knight, Jack A Gilbert, Marilyn C Cornelis, Marie G Gantz, Kate Burdekin, Kevin Cummiskey, Susan C J Sumner, Wimal Pathmasiri, Edward Sazonov, Kelley Pettee Gabriel, Erin E Dooley, Mark A Green, Andrew Pfluger, Samantha KleinbergObesity (Silver Spring, Md.)2024-03-01
Author Correction: Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).Sanjay Jain, Liming Pei, Jeffrey M Spraggins, Michael Angelo, James P Carson, Nils Gehlenborg, Fiona Ginty, Joana P Gonçalves, James S Hagood, John W Hickey, Neil L Kelleher, Louise C Laurent, Shin Lin, Yiing Lin, Huiping Liu, Alexandra Naba, Ernesto S Nakayasu, Wei-Jun Qian, Andrea Radtke, Paul Robson, Brent R Stockwell, Raf Van de Plas, Ioannis S Vlachos, Mowei Zhou, , Katy Börner, Michael P SnyderNature Cell Biology2024-03-01
Harnessing the Power Within: Engineering the Microbiome for Enhanced Gynecologic Health.Caitriona Brennan, Kristina Chan, Tanya Kumar, Erica Maissy, Linda Brubaker, Marisol I Dothard, Jack A Gilbert, Katharine E Gilbert, Amanda L Lewis, Varykina Thackray, Amir Zarrinpar, Rob KnightReproduction & Fertility2024-03-01
Staphylococcus aureus: The Bug Behind the Itch in Atopic Dermatitis.Richard L Gallo, Alexander R HorswillThe Journal Of Investigative Dermatology2024-02-29
Author Correction: Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.Youwen Qin, Aki S Havulinna, Yang Liu, Pekka Jousilahti, Scott C Ritchie, Alex Tokolyi, Jon G Sanders, Liisa Valsta, Marta Brożyńska, Qiyun Zhu, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Rohit Loomba, Susan Cheng, Mohit Jain, Teemu Niiranen, Leo Lahti, Rob Knight, Veikko Salomaa, Michael Inouye, Guillaume MéricNature Genetics2024-02-29
A guideline on the molecular ecosystem regulating ferroptosis.Enyong Dai, Xin Chen, Andreas Linkermann, Xuejun Jiang, Rui Kang, Valerian E Kagan, Hülya Bayir, Wan Seok Yang, Ana J Garcia-Saez, Maria S Ioannou, Tobias Janowitz, Qitao Ran, Wei Gu, Boyi Gan, Dmitri V Krysko, Xiaofeng Zhu, Jiayi Wang, Stefan Krautwald, Shinya Toyokuni, Yangchun Xie, Florian R Greten, Qing Yi, Joel Schick, Jiao Liu, Dmitry I Gabrilovich, Jinbao Liu, Herbert J Zeh, Donna D Zhang, Minghua Yang, Juan Iovanna, Manfred Kopf, Timon E Adolph, Jen-Tsan Chi, Changfeng Li, Hidenori Ichijo, Michael Karin, Vijay G Sankaran, Weiping Zou, Lorenzo Galluzzi, Ashley I Bush, Binghui Li, Gerry Melino, Eric H Baehrecke, Michael T Lotze, Daniel J Klionsky, Brent R Stockwell, Guido Kroemer, Daolin TangNature Cell Biology2024-02-29
More on Pre-Covid-19, SARS-CoV-2-Negative MIS-C.Alessandra Franco, Adriana Tremoulet, Jane C BurnsThe New England Journal Of Medicine2024-02-23
CXCL12+ dermal fibroblasts promote neutrophil recruitment and host defense by recognition of IL-17.Kellen J Cavagnero, Fengwu Li, Tatsuya Dokoshi, Teruaki Nakatsuji, Alan M O'Neill, Carlos Aguilera, Edward Liu, Michael Shia, Olive Osuoji, Tissa Hata, Richard L GalloThe Journal Of Experimental Medicine2024-02-23
Robustness of cancer microbiome signals over a broad range of methodological variation.Gregory D Sepich-Poore, Daniel McDonald, Evguenia Kopylova, Caitlin Guccione, Qiyun Zhu, George Austin, Carolina Carpenter, Serena Fraraccio, Stephen Wandro, Tomasz Kosciolek, Stefan Janssen, Jessica L Metcalf, Se Jin Song, Jad Kanbar, Sandrine Miller-Montgomery, Robert Heaton, Rana Mckay, Sandip Pravin Patel, Austin D Swafford, Tal Korem, Rob KnightOncogene2024-02-23
Lithium response in bipolar disorder is associated with focal adhesion and PI3K-Akt networks: a multi-omics replication study.Anna H Ou, Sara B Rosenthal, Mazda Adli, Kazufumi Akiyama, Nirmala Akula, Martin Alda, Azmeraw T Amare, Raffaella Ardau, Bárbara Arias, Jean-Michel Aubry, Lena Backlund, Michael Bauer, Bernhard T Baune, Frank Bellivier, Antonio Benabarre, Susanne Bengesser, Abesh Kumar Bhattacharjee, Joanna M Biernacka, Pablo Cervantes, Guo-Bo Chen, Hsi-Chung Chen, Caterina Chillotti, Sven Cichon, Scott R Clark, Francesc Colom, David A Cousins, Cristiana Cruceanu, Piotr M Czerski, Clarissa R Dantas, Alexandre Dayer, Maria Del Zompo, Franziska Degenhardt, J Raymond DePaulo, Bruno Étain, Peter Falkai, Frederike Tabea Fellendorf, Ewa Ferensztajn-Rochowiak, Andreas J Forstner, Louise Frisén, Mark A Frye, Janice M Fullerton, Sébastien Gard, Julie S Garnham, Fernando S Goes, Maria Grigoroiu-Serbanescu, Paul Grof, Oliver Gruber, Ryota Hashimoto, Joanna Hauser, Urs Heilbronner, Stefan Herms, Per Hoffmann, Andrea Hofmann, Liping Hou, Stephane Jamain, Esther Jiménez, Jean-Pierre Kahn, Layla Kassem, Tadafumi Kato, Sarah Kittel-Schneider, Barbara König, Po-Hsiu Kuo, Ichiro Kusumi, Nina Lackner, Gonzalo Laje, Mikael Landén, Catharina Lavebratt, Marion Leboyer, Susan G Leckband, Carlos A López Jaramillo, Glenda MacQueen, Mario Maj, Mirko Manchia, Cynthia Marie-Claire, Lina Martinsson, Manuel Mattheisen, Michael J McCarthy, Susan L McElroy, Francis J McMahon, Philip B Mitchell, Marina Mitjans, Francis M Mondimore, Palmiero Monteleone, Caroline M Nievergelt, Markus M Nöthen, Tomas Novák, Urban Ösby, Norio Ozaki, Sergi Papiol, Roy H Perlis, Claudia Pisanu, James B Potash, Andrea Pfennig, Daniela Reich-Erkelenz, Andreas Reif, Eva Z Reininghaus, Marcella Rietschel, Guy A Rouleau, Janusz K Rybakowski, Martin Schalling, Peter R Schofield, K Oliver Schubert, Thomas G Schulze, Barbara W Schweizer, Florian Seemüller, Giovanni Severino, Tatyana Shekhtman, Paul D Shilling, Kazutaka Shimoda, Christian Simhandl, Claire M Slaney, Alessio Squassina, Thomas Stamm, Pavla Stopkova, Sarah K Tighe, Alfonso Tortorella, Gustavo Turecki, Eduard Vieta, Julia Volkert, Stephanie Witt, Naomi R Wray, Adam Wright, L Trevor Young, Peter P Zandi, John R KelsoeTranslational Psychiatry2024-02-23
Bacterial Resistance Response and Resource Availability Mediates Viral Coexistence.Lisa Butt, Justin R Meyer, Richard J Lindsay, Robert E Beardmore, Ivana GudeljJournal Of Evolutionary Biology2024-02-22
Lipocalin-2 expression identifies an intestinal regulatory neutrophil population during acute graft-versus-host disease.Marie Czech, Sophia Schneider, Nina Peltokangas, Nadia El Khawanky, Sakhila Ghimire, Geoffroy Andrieux, Jan Hülsdünker, Máté Krausz, Michele Proietti, Lukas M Braun, Tamina Rückert, Marlene Langenbach, Dominik Schmidt, Ina Martin, Valentin Wenger, Enrique de Vega, Eileen Haring, Mohsen Pourjam, Dietmar Pfeifer, Annette Schmitt-Graeff, Bodo Grimbacher, Konrad Aumann, Brigitte Kircher, Herbert Tilg, Manuela Raffatellu, Erik Thiele Orberg, Georg Häcker, Justus Duyster, Natalie Köhler, Ernst Holler, David Nachbaur, Melanie Boerries, Romana R Gerner, Dominic Grün, Robert ZeiserScience Translational Medicine2024-02-21
A conserved antigen induces respiratory Th17-mediated broad serotype protection against pneumococcal superinfection.Xue Liu, Laurye Van Maele, Laura Matarazzo, Daphnée Soulard, Vinicius Alves Duarte da Silva, Vincent de Bakker, Julien Dénéréaz, Florian P Bock, Michael Taschner, Jinzhao Ou, Stephan Gruber, Victor Nizet, Jean-Claude Sirard, Jan-Willem VeeningCell Host & Microbe2024-02-21
Universal Digital High-Resolution Melt Analysis for the Diagnosis of Bacteremia.April Aralar, Tyler Goshia, Nanda Ramchandar, Shelley M Lawrence, Aparajita Karmakar, Ankit Sharma, Mridu Sinha, David T Pride, Peiting Kuo, Khrissa Lecrone, Megan Chiu, Karen K Mestan, Eniko Sajti, Michelle Vanderpool, Sarah Lazar, Melanie Crabtree, Yordanos Tesfai, Stephanie I FraleyThe Journal Of Molecular Diagnostics : JMD2024-02-21
Serum aryl hydrocarbon receptor activity is associated with survival in patients with alcohol-associated hepatitis.Tomoo Yamazaki, Tetsuya Kouno, Cynthia L Hsu, Phillipp Hartmann, Susan Mayo, Xinlian Zhang, Peter Stärkel, Francisco Bosques-Padilla, Elizabeth C Verna, Juan G Abraldes, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie L Shawcross, Alexandre Louvet, Michael R Lucey, Philippe Mathurin, Guadalupe Garcia-Tsao, Ramon Bataller, Bernd Schnabl, Hepatology (Baltimore, Md.)2024-02-20
The role of the microbiome in liver disease.David Schöler, Bernd SchnablCurrent Opinion In Gastroenterology2024-02-19
Live bacterial therapeutics for detection and treatment of colorectal cancer.Joanna Zhang, Jeff Hasty, Amir ZarrinparNature Reviews. Gastroenterology & Hepatology2024-02-14
MAR4 : A Unique Resource for Natural Product Discovery.Douglas Sweeney, Alexander B Chase, Alexander Bogdanov, Paul R JensenJournal Of Natural Products2024-02-14
Cytokines in Follicular Helper T Cell Biology in Physiologic and Pathologic Conditions.Jinyong Choi, Shane Crotty, Youn Soo ChoiImmune Network2024-02-14
Reconstructing the transcriptional regulatory network of probiotic is enabled by transcriptomics and machine learning.Jonathan Josephs-Spaulding, Akanksha Rajput, Ying Hefner, Richard Szubin, Archana Balasubramanian, Gaoyuan Li, Daniel C Zielinski, Leonie Jahn, Morten Sommer, Patrick Phaneuf, Bernhard O PalssonMSystems2024-02-13
Coral thermal stress and bleaching enrich and restructure reef microbial communities via altered organic matter exudation.Wesley J Sparagon, Milou G I Arts, Zachary A Quinlan, Linda Wegley Kelly, Irina Koester, Jacqueline Comstock, Jessica A Bullington, Craig A Carlson, Pieter C Dorrestein, Lihini I Aluwihare, Andreas F Haas, Craig E NelsonCommunications Biology2024-02-13
A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables.Zachary M Burcham, Aeriel D Belk, Bridget B McGivern, Amina Bouslimani, Parsa Ghadermazi, Cameron Martino, Liat Shenhav, Anru R Zhang, Pixu Shi, Alexandra Emmons, Heather L Deel, Zhenjiang Zech Xu, Victoria Nieciecki, Qiyun Zhu, Michael Shaffer, Morgan Panitchpakdi, Kelly C Weldon, Kalen Cantrell, Asa Ben-Hur, Sasha C Reed, Greg C Humphry, Gail Ackermann, Daniel McDonald, Siu Hung Joshua Chan, Melissa Connor, Derek Boyd, Jake Smith, Jenna M S Watson, Giovanna Vidoli, Dawnie Steadman, Aaron M Lynne, Sibyl Bucheli, Pieter C Dorrestein, Kelly C Wrighton, David O Carter, Rob Knight, Jessica L MetcalfNature Microbiology2024-02-12
StressME: Unified computing framework of Escherichia coli metabolism, gene expression, and stress responses.Jiao Zhao, Ke Chen, Bernhard O Palsson, Laurence YangPLoS Computational Biology2024-02-12
Predictors of HIV rebound differ by timing of antiretroviral therapy initiation.Jonathan Z Li, Meghan Melberg, Autumn Kittilson, Mohamed Abdel-Mohsen, Yijia Li, Evgenia Aga, Ronald J Bosch, Elizabeth R Wonderlich, Jennifer Kinslow, Leila B Giron, Clara Di Germanio, Mark Pilkinton, Lynsay MacLaren, Michael Keefer, Lawrence Fox, Liz Barr, Edward Acosta, Jintanat Ananworanich, Robert Coombs, John Mellors, Steven Deeks, Rajesh T Gandhi, Michael Busch, Alan Landay, Bernard Macatangay, Davey M Smith, JCI Insight2024-02-08
Structure and Biosynthesis of Hectoramide B, a Linear Depsipeptide from Marine Cyanobacterium JHB Discovered via Coculture with .Thuan-Ethan Ngo, Andrew Ecker, Byeol Ryu, Aurora Guild, Ariana Remmel, Paul D Boudreau, Kelsey L Alexander, C Benjamin Naman, Evgenia Glukhov, Nicole E Avalon, Vikram V Shende, Lamar Thomas, Samira Dahesh, Victor Nizet, Lena Gerwick, William H GerwickACS Chemical Biology2024-02-08
Phenotypic Patterning through Copy Number Adaptation to Environmental Gradients.Paige Steppe, Camilo Rey-Bedón, Shalni Kumar, Emerald Forrest, Niklas Van Der Wagt, Arnav Tayal, Lev Tsimring, Jeff HastyACS Synthetic Biology2024-02-08
A concept for international societally relevant microbiology education and microbiology knowledge promulgation in society.Kenneth Timmis, John E Hallsworth, Terry J McGenity, Rachel Armstrong, María Francisca Colom, Zeynep Ceren Karahan, Max Chavarría, Patricia Bernal, Eric S Boyd, Juan Luis Ramos, Martin Kaltenpoth, Carla Pruzzo, Gerard Clarke, Purificación López-Garcia, Michail M Yakimov, Jessamyn Perlmutter, Chris Greening, Emiley Eloe-Fadrosh, Willy Verstraete, Olga C Nunes, Oleg Kotsyurbenko, Pablo Iván Nikel, Paola Scavone, Max M Häggblom, Rob Lavigne, Frédérique Le Roux, James K Timmis, Victor Parro, Carmen Michán, José Luis García, Arturo Casadevall, Shelley M Payne, Joachim Frey, Omry Koren, James I Prosser, Leo Lahti, Rup Lal, Shailly Anand, Utkarsh Sood, Pierre Offre, Casey C Bryce, Allen Y Mswaka, Jörg Jores, Betül Kaçar, Lars Mathias Blank, Nicole Maaßen, Phillip B Pope, Horia L Banciu, Judith Armitage, Sang Yup Lee, Fengping Wang, Thulani P Makhalanyane, Jack A Gilbert, Thomas K Wood, Branka Vasiljevic, Mario Soberón, Zulema Udaondo, Fernando Rojo, Jyoti Prakash Tamang, Tatiana Giraud, Jeanne Ropars, Thaddeus Ezeji, Volker Müller, Hirofume Danbara, Beate Averhoff, Angela Sessitsch, Laila Pamela Partida-Martínez, Wei Huang, Søren Molin, Pilar Junier, Ricardo Amils, Xiao-Lei Wu, Eliora Ron, Huseyin Erten, Elaine Cristina Pereira de Martinis, Alexander Rapoport, Maarja Öpik, W Donald R Pokatong, Courtney Stairs, Mohammad Ali Amoozegar, Jéssica Gil SernaMicrobial Biotechnology2024-02-08
Bile salt hydrolase catalyses formation of amine-conjugated bile acids.Bipin Rimal, Stephanie L Collins, Ceylan E Tanes, Edson R Rocha, Megan A Granda, Sumeet Solanki, Nushrat J Hoque, Emily C Gentry, Imhoi Koo, Erin R Reilly, Fuhua Hao, Devendra Paudel, Vishal Singh, Tingting Yan, Min Soo Kim, Kyle Bittinger, Joseph P Zackular, Kristopher W Krausz, Dhimant Desai, Shantu Amin, James P Coleman, Yatrik M Shah, Jordan E Bisanz, Frank J Gonzalez, John P Vanden Heuvel, Gary D Wu, Babette S Zemel, Pieter C Dorrestein, Emily E Weinert, Andrew D PattersonNature2024-02-07
Machine learning analysis of RB-TnSeq fitness data predicts functional gene modules in KT2440.Andrew J Borchert, Alissa C Bleem, Hyun Gyu Lim, Kevin Rychel, Keven D Dooley, Zoe A Kellermyer, Tracy L Hodges, Bernhard O Palsson, Gregg T BeckhamMSystems2024-02-07
Co-occurrence network analysis reveals the alterations of the skin microbiome and metabolome in adults with mild to moderate atopic dermatitis.Paulo Wender P Gomes, Helena Mannochio-Russo, Junhong Mao, Haoqi Nina Zhao, Jacob Ancira, Craig D Tipton, Pieter C Dorrestein, Min LiMSystems2024-02-06
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data.Simone Zuffa, Robin Schmid, Anelize Bauermeister, Paulo Wender P Gomes, Andres M Caraballo-Rodriguez, Yasin El Abiead, Allegra T Aron, Emily C Gentry, Jasmine Zemlin, Michael J Meehan, Nicole E Avalon, Robert H Cichewicz, Ekaterina Buzun, Marvic Carrillo Terrazas, Chia-Yun Hsu, Renee Oles, Adriana Vasquez Ayala, Jiaqi Zhao, Hiutung Chu, Mirte C M Kuijpers, Sara L Jackrel, Fidele Tugizimana, Lerato Pertunia Nephali, Ian A Dubery, Ntakadzeni Edwin Madala, Eduarda Antunes Moreira, Leticia Veras Costa-Lotufo, Norberto Peporine Lopes, Paula Rezende-Teixeira, Paula C Jimenez, Bipin Rimal, Andrew D Patterson, Matthew F Traxler, Rita de Cassia Pessotti, Daniel Alvarado-Villalobos, Giselle Tamayo-Castillo, Priscila Chaverri, Efrain Escudero-Leyva, Luis-Manuel Quiros-Guerrero, Alexandre Jean Bory, Juliette Joubert, Adriano Rutz, Jean-Luc Wolfender, Pierre-Marie Allard, Andreas Sichert, Sammy Pontrelli, Benjamin S Pullman, Nuno Bandeira, William H Gerwick, Katia Gindro, Josep Massana-Codina, Berenike C Wagner, Karl Forchhammer, Daniel Petras, Nicole Aiosa, Neha Garg, Manuel Liebeke, Patric Bourceau, Kyo Bin Kang, Henna Gadhavi, Luiz Pedro Sorio de Carvalho, Mariana Silva Dos Santos, Alicia Isabel Pérez-Lorente, Carlos Molina-Santiago, Diego Romero, Raimo Franke, Mark Brönstrup, Arturo Vera Ponce de León, Phillip Byron Pope, Sabina Leanti La Rosa, Giorgia La Barbera, Henrik M Roager, Martin Frederik Laursen, Fabian Hammerle, Bianka Siewert, Ursula Peintner, Cuauhtemoc Licona-Cassani, Lorena Rodriguez-Orduña, Evelyn Rampler, Felina Hildebrand, Gunda Koellensperger, Harald Schoeny, Katharina Hohenwallner, Lisa Panzenboeck, Rachel Gregor, Ellis Charles O'Neill, Eve Tallulah Roxborough, Jane Odoi, Nicole J Bale, Su Ding, Jaap S Sinninghe Damsté, Xue Li Guan, Jerry J Cui, Kou-San Ju, Denise Brentan Silva, Fernanda Motta Ribeiro Silva, Gilvan Ferreira da Silva, Hector H F Koolen, Carlismari Grundmann, Jason A Clement, Hosein Mohimani, Kirk Broders, Kerry L McPhail, Sidnee E Ober-Singleton, Christopher M Rath, Daniel McDonald, Rob Knight, Mingxun Wang, Pieter C DorresteinNature Microbiology2024-02-05
Diagnostic Ability of Simple Noninvasive Blood Tests to Predict Increased Liver Stiffness in People Living with HIV and Steatotic Liver Disease.Richard K Sterling, Eduardo Vilar-Gomez, Laura A Wilson ScM, Rohit Loomba, Samer Gawrieh, Jennifer Price, Susanna Naggie, Jordan E Lake, Sonya Heath, James Tonascia, Mark Sulkowski, Naga Chalasani, The American Journal Of Gastroenterology2024-02-05
Tamm-Horsfall protein augments neutrophil NETosis during urinary tract infection.Vicki Mercado-Evans, Claude Chew, Camille Serchejian, Alexander Saltzman, Marlyd E Mejia, Jacob J Zulk, Ingrid Cornax, Victor Nizet, Kathryn A PatrasBioRxiv : The Preprint Server For Biology2024-02-05
Viral afterlife: SARS-CoV-2 as a reservoir of immunomimetic peptides that reassemble into proinflammatory supramolecular complexes.Yue Zhang, Vanthana Bharathi, Tatsuya Dokoshi, Jaime de Anda, Lauryn Tumey Ursery, Nikhil N Kulkarni, Yoshiyuki Nakamura, Jonathan Chen, Elizabeth W C Luo, Lamei Wang, Hua Xu, Alison Coady, Raymond Zurich, Michelle W Lee, Tsutomu Matsui, HongKyu Lee, Liana C Chan, Athena A Schepmoes, Mary S Lipton, Rui Zhao, Joshua N Adkins, Geremy C Clair, Lance R Thurlow, Jonathan C Schisler, Matthew C Wolfgang, Robert S Hagan, Michael R Yeaman, Thomas M Weiss, Xinhua Chen, Melody M H Li, Victor Nizet, Silvio Antoniak, Nigel Mackman, Richard L Gallo, Gerard C L WongProceedings Of The National Academy Of Sciences Of The United States Of America2024-02-02
Fungal signature differentiates alcohol-associated liver disease from nonalcoholic fatty liver disease.Greta Viebahn, Phillipp Hartmann, Sonja Lang, Münevver Demir, Xinlian Zhang, Derrick E Fouts, Peter Stärkel, Bernd SchnablGut Microbes2024-02-01
Evaluation of the safety and efficacy of fecal microbiota transplantations in bottlenose dolphins (Tursiops truncatus) using metagenomic sequencing.Barbara K Linnehan, Sho M Kodera, Sarah M Allard, Erin C Brodie, Celeste Allaband, Rob Knight, Holly L Lutz, Maureen C Carroll, Jennifer M Meegan, Eric D Jensen, Jack A GilbertJournal Of Applied Microbiology2024-02-01
Analytical Challenges in Omics Research on Asthma and Allergy: A National Institute of Allergy and Infectious Diseases Workshop.Supinda Bunyavanich, Patrice M Becker, Matthew C Altman, Jessica Lasky-Su, Carole Ober, Karsten Zengler, Evgeny Berdyshev, Richard Bonneau, Talal Chatila, Nilanjan Chatterjee, Kian Fan Chung, Colleen Cutcliffe, Wendy Davidson, Gang Dong, Gang Fang, Patricia Fulkerson, Blanca E Himes, Liming Liang, Rasika A Mathias, Shuji Ogino, Joseph Petrosino, Nathan D Price, Eric Schadt, James Schofield, Max A Seibold, Hanno Steen, Lisa Wheatley, Hongmei Zhang, Alkis Togias, Kohei HasegawaThe Journal Of Allergy And Clinical Immunology2024-01-29
Competition-driven eco-evolutionary feedback reshapes bacteriophage lambda's fitness landscape and enables speciation.Michael B Doud, Animesh Gupta, Victor Li, Sarah J Medina, Caesar A De La Fuente, Justin R MeyerNature Communications2024-01-29
Inferred regulons are consistent with regulator binding sequences in E. coli.Sizhe Qiu, Xinlong Wan, Yueshan Liang, Cameron R Lamoureux, Amir Akbari, Bernhard O Palsson, Daniel C ZielinskiPLoS Computational Biology2024-01-22
Variant of the lactase LCT gene explains association between milk intake and incident type 2 diabetes.Kai Luo, Guo-Chong Chen, Yanbo Zhang, Jee-Young Moon, Jiaqian Xing, Brandilyn A Peters, Mykhaylo Usyk, Zheng Wang, Gang Hu, Jun Li, Elizabeth Selvin, Casey M Rebholz, Tao Wang, Carmen R Isasi, Bing Yu, Rob Knight, Eric Boerwinkle, Robert D Burk, Robert C Kaplan, Qibin QiNature Metabolism2024-01-22
Examining the taxonomic distribution of tetracycline resistance in a wastewater plant.Howard Ochman, Erik M Quandt, Neil Gottell, Jack A GilbertSustainable Microbiology2024-01-19
Cognitive criteria in HIV: greater consensus is needed.Lucette A Cysique, Bruce J Brew, Jane Bruning, Desiree Byrd, Jane Costello, Kirstie Daken, Ronald J Ellis, Pariya L Fazeli, Karl Goodkin, Hetta Gouse, Robert K Heaton, Scott Letendre, Jules Levin, Htein Linn Aung, Monica Rivera Mindt, David Moore, Amy B Mullens, Sérgio Monteiro de Almeida, Jose A Muñoz-Moreno, Chrispher Power, Reuben N Robbins, John Rule, Reena Rajasuriar, Micah J Savin, Jeff Taylor, Mattia Trunfio, David E Vance, Pui Li Wong, Steven P Woods, Edwina J Wright, Sean B RourkeNature Reviews. Neurology2024-01-16
Integrated Genomic and Social Network Analyses of Severe Acute Respiratory Syndrome Coronavirus 2 Transmission in the Healthcare Setting.Jocelyn Keehner, Shira R Abeles, Christopher A Longhurst, Lucy E Horton, Frank E Myers, Lindsay Riggs-Rodriguez, Mohammed Ahmad, Sally Baxter, Aaron Boussina, Kalen Cantrell, Priscilla Cardenas, Peter De Hoff, Robert El-Kareh, Jennifer Holland, Daryn Ikeda, Kirk Kurashige, Louise C Laurent, , Andrew Lucas, David Pride, Shashank Sathe, Allen R Tran, Tetyana I Vasylyeva, Gene Yeo, Rob Knight, Joel O Wertheim, Francesca J TorrianiClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2024-01-16
Comparative molecular profiling of multidrug-resistant identifies novel mutations in regional clinical isolates from South India.Nitasha D Menon, Priyanka Somanath, Jennifer Jossart, Gayathri Vijayakumar, Kavya Shetty, Manasi Baswe, Meghna Chatterjee, Malavika B Hari, Samitha Nair, V Anil Kumar, Bipin G Nair, Victor Nizet, J Jefferson P Perry, Geetha B KumarJAC-antimicrobial Resistance2024-01-16
Outcomes of SARS-CoV-2 and Seasonal Viruses Among Children Hospitalized in Brazil.Cristiane S Dias, Lilian M Diniz, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Clara C Pinhati, Stella C Galante, Isadora Y Veloso, Hercílio Martelli-Júnior, Eduardo A OliveiraPediatrics2024-01-12
A multi-study analysis enables identification of potential microbial features associated with skin aging signs.Tyler Myers, Amina Bouslimani, Shi Huang, Shalisa T Hansen, Cécile Clavaud, Anissa Azouaoui, Alban Ott, Audrey Gueniche, Charbel Bouez, Qian Zheng, Luc Aguilar, Rob Knight, Magali Moreau, Se Jin SongFrontiers In Aging2024-01-11
Functional metabolomics of the human scalp: a metabolic niche for .Louis-Félix Nothias, Robin Schmid, Allison Garlet, Hunter Cameron, Sabrina Leoty-Okombi, Valérie André-Frei, Regine Fuchs, Pieter C Dorrestein, Philipp TernesMSystems2024-01-11
Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair.Reta D Sarsam, Jun Xu, Indrajit Lahiri, Wenzhi Gong, Qingrong Li, Juntaek Oh, Zhen Zhou, Peini Hou, Jenny Chong, Nan Hao, Shisheng Li, Dong Wang, Andres E LeschzinerProceedings Of The National Academy Of Sciences Of The United States Of America2024-01-09
A bacterial sialidase mediates early-life colonization by a pioneering gut commensal.Ekaterina Buzun, Chia-Yun Hsu, Kristija Sejane, Renee E Oles, Adriana Vasquez Ayala, Luke R Loomis, Jiaqi Zhao, Leigh-Ana Rossitto, Dominic M McGrosso, David J Gonzalez, Lars Bode, Hiutung ChuCell Host & Microbe2024-01-09
Independent component analysis reveals 49 independently modulated gene sets within the global transcriptional regulatory architecture of multidrug-resistant .Nitasha D Menon, Saugat Poudel, Anand V Sastry, Kevin Rychel, Richard Szubin, Nicholas Dillon, Hannah Tsunemoto, Yujiro Hirose, Bipin G Nair, Geetha B Kumar, Bernhard O Palsson, Victor NizetMSystems2024-01-08
The inner workings of an ancient biological clock.Mingxu Fang, Andy LiWang, Susan S Golden, Carrie L PartchTrends In Biochemical Sciences2024-01-06
Effects of Opioid Withdrawal on Psychobiology in People Living with HIV.Igor Grant, Evgeny Krupitsky, Marina Vetrova, Anya Umlauf, Robert K Heaton, Richard L Hauger, Olga Toussova, Donald R Franklin, Scott L Letendre, George Woody, Elena Blokhina, Dmitry Lioznov, Edwin ZvartauViruses2024-01-06
Adaptation of the brainwriting premortem technique to inform the co-creation of COVID-19 testing strategies in underserved communities in South San Diego.Borsika A Rabin, Kelli L Cain, Lawrence O Ayers, Angel Lomeli, Arleth Escoto, Maria Linda Burola, Melanie Aguilar, Stephenie Tinoco Calvillo, Breanna Reyes, Linda Salgin, Robert Tukey, Louise C Laurent, Nicole A StadnickBMC Health Services Research2024-01-03
The shikimate pathway: gateway to metabolic diversity.Vikram V Shende, Katherine D Bauman, Bradley S MooreNatural Product Reports2024-01-03
Decentralized ORP Measurements for Gut Redox Status Monitoring: Toward Personalized Gut Microbiota Balance.Víctor Ruiz-Valdepeñas Montiel, Eva Vargas, Amira Ben Hassine, Ignasi Simon, Andres Duvvuri, An-Yi Chang, Ponnusamy Nandhakumar, Andrea Bulbarello, André Düsterloh, Tim Mak, Joseph WangAnalytical Chemistry2023-12-27
Decoding human cytomegalovirus for the development of innovative diagnostics to detect congenital infection.Shelley M Lawrence, Tyler Goshia, Mridu Sinha, Stephanie I Fraley, Marvin WilliamsPediatric Research2023-12-25
SARS-CoV-2 variants are associated with different clinical courses in children with MIS-C.Andres F Moreno Rojas, Emelia Bainto, Helen Harvey, Adriana H Tremoulet, Jane C Burns, Kirsten B DummerWorld Journal Of Pediatrics : WJP2023-12-22
Pangenome comparison of genomospecies unveil genetic diversity and ecological insights.Renee E Oles, Marvic Carrillo Terrazas, Luke R Loomis, Chia-Yun Hsu, Caitlin Tribelhorn, Pedro Belda Ferre, Allison Ea, MacKenzie Bryant, Jocelyn Young, Hannah C Carrow, William J Sandborn, Parambir Dulai, Mamata Sivagnanam, David Pride, Rob Knight, Hiutung ChuBioRxiv : The Preprint Server For Biology2023-12-21
Exploring Roles of the Polysaccharide Capsule in Pathogenesis of Hypervirulent Clinical Isolate Lac-4.Elisabet Bjånes, Truman Koh, Tariq Qayum, Raymond Zurich, Sinead McCabe, Kegan Hampel, Lisa Cartwright, Victor NizetAntibiotics (Basel, Switzerland)2023-12-20
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics.Wout Bittremieux, Nicole E Avalon, Sydney P Thomas, Sarvar A Kakhkhorov, Alexander A Aksenov, Paulo Wender P Gomes, Christine M Aceves, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, William H Gerwick, Tao Huan, Alan K Jarmusch, Rima F Kaddurah-Daouk, Kyo Bin Kang, Hyun Woo Kim, Todor Kondić, Helena Mannochio-Russo, Michael J Meehan, Alexey V Melnik, Louis-Felix Nothias, Claire O'Donovan, Morgan Panitchpakdi, Daniel Petras, Robin Schmid, Emma L Schymanski, Justin J J van der Hooft, Kelly C Weldon, Heejung Yang, Shipei Xing, Jasmine Zemlin, Mingxun Wang, Pieter C DorresteinNature Communications2023-12-20
Response to Daungsupawong and Wiwanitkitre: "Validating Tools to Detect and Inactivate Monkeypox Virus in Human Milk".Lars BodeBreastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine2023-12-18
Microbial Players in Primary Sclerosing Cholangitis - current evidence and concepts.Burcin Özdirik, Bernd SchnablCellular And Molecular Gastroenterology And Hepatology2023-12-16
Effects of variation in sample storage conditions and swab order on 16S vaginal microbiome analyses.Tanya Kumar, MacKenzie Bryant, Kalen Cantrell, Se Jin Song, Daniel McDonald, Helena M Tubb, Sawyer Farmer, Amanda Lewis, Emily S Lukacz, Linda Brubaker, Rob KnightMicrobiology Spectrum2023-12-14
Commensal bacteria promote type I interferon signaling to maintain immune tolerance in mice.Adriana Vasquez Ayala, Chia-Yun Hsu, Renee E Oles, Kazuhiko Matsuo, Luke R Loomis, Ekaterina Buzun, Marvic Carrillo Terrazas, Romana R Gerner, Hsueh-Han Lu, Sohee Kim, Ziyue Zhang, Jong Hwee Park, Paul Rivaud, Matt Thomson, Li-Fan Lu, Booki Min, Hiutung ChuThe Journal Of Experimental Medicine2023-12-12
Elevated Plasma Protein Carbonyl Concentration Is Associated with More Abnormal White Matter in People with HIV.Patricia K Riggs, Albert M Anderson, Bin Tang, Leah H Rubin, Susan Morgello, Christina M Marra, Benjamin B Gelman, David B Clifford, Donald Franklin, Robert K Heaton, Ronald J Ellis, Christine Fennema-Notestine, Scott L LetendreViruses2023-12-12
The brain, gut, and bladder health nexus: A conceptual model linking stress and mental health disorders to overactive bladder in women.Ariana L Smith, Amanda Berry, Linda Brubaker, Shayna D Cunningham, Sheila Gahagan, Lisa Kane Low, Margaret Mueller, Siobhan Sutcliffe, Beverly R Williams, Sonya S Brady, Neurourology And Urodynamics2023-12-11
A Standardized Set of MoClo-Compatible Inducible Promoter Systems for Tunable Gene Expression in Yeast.Richard O'Laughlin, Quoc Tran, Andrew Lezia, Wasu Ngamkanjanarat, Philip Emmanuele, Nan Hao, Jeff HastyACS Synthetic Biology2023-12-11
Genomic and Phenotypic Insight into the Probiotic Potential of Lactic Acid Bacterial spp. Associated with the Human Gut Mucosa.Kanwal Aziz, Jack A Gilbert, Arsalan Haseeb ZaidiProbiotics And Antimicrobial Proteins2023-12-09
Reverse metabolomics for the discovery of chemical structures from humans.Emily C Gentry, Stephanie L Collins, Morgan Panitchpakdi, Pedro Belda-Ferre, Allison K Stewart, Marvic Carrillo Terrazas, Hsueh-Han Lu, Simone Zuffa, Tingting Yan, Julian Avila-Pacheco, Damian R Plichta, Allegra T Aron, Mingxun Wang, Alan K Jarmusch, Fuhua Hao, Mashette Syrkin-Nikolau, Hera Vlamakis, Ashwin N Ananthakrishnan, Brigid Boland, Amy Hemperly, Niels Vande Casteele, Frank J Gonzalez, Clary B Clish, Ramnik J Xavier, Hiutung Chu, Erin S Baker, Andrew D Patterson, Rob Knight, Dionicio Siegel, Pieter C DorresteinNature2023-12-05
Commensal Oral Microbiota, Disease Severity and Mortality in Fibrotic Lung Disease.David N O'Dwyer, John S Kim, Shwu-Fan Ma, Piyush Ranjan, Promi Das, Jay H Lipinski, Joseph D Metcalf, Nicole R Falkowski, Eric Yow, Kevin Anstrom, Robert P Dickson, Yong Huang, Jack A Gilbert, Fernando J Martinez, Imre NothAmerican Journal Of Respiratory And Critical Care Medicine2023-12-05
Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics.Nathaniel L Matteson, Gabriel W Hassler, Ezra Kurzban, Madison A Schwab, Sarah A Perkins, Karthik Gangavarapu, Joshua I Levy, Edyth Parker, David Pride, Abbas Hakim, Peter De Hoff, Willi Cheung, Anelizze Castro-Martinez, Andrea Rivera, Anthony Veder, Ariana Rivera, Cassandra Wauer, Jacqueline Holmes, Jedediah Wilson, Shayla N Ngo, Ashley Plascencia, Elijah S Lawrence, Elizabeth W Smoot, Emily R Eisner, Rebecca Tsai, Marisol Chacón, Nathan A Baer, Phoebe Seaver, Rodolfo A Salido, Stefan Aigner, Toan T Ngo, Tom Barber, Tyler Ostrander, Rebecca Fielding-Miller, Elizabeth H Simmons, Oscar E Zazueta, Idanya Serafin-Higuera, Manuel Sanchez-Alavez, Jose L Moreno-Camacho, Abraham García-Gil, Ashleigh R Murphy Schafer, Eric McDonald, Jeremy Corrigan, John D Malone, Sarah Stous, Seema Shah, Niema Moshiri, Alana Weiss, Catelyn Anderson, Christine M Aceves, Emily G Spencer, Emory C Hufbauer, Justin J Lee, Alison J King, Karthik S Ramesh, Kelly N Nguyen, Kieran Saucedo, Refugio Robles-Sikisaka, Kathleen M Fisch, Steven L Gonias, Amanda Birmingham, Daniel McDonald, Smruthi Karthikeyan, Natasha K Martin, Robert T Schooley, Agustin J Negrete, Horacio J Reyna, Jose R Chavez, Maria L Garcia, Jose M Cornejo-Bravo, David Becker, Magnus Isaksson, Nicole L Washington, William Lee, Richard S Garfein, Marco A Luna-Ruiz Esparza, Jonathan Alcántar-Fernández, Benjamin Henson, Kristen Jepsen, Beatriz Olivares-Flores, Gisela Barrera-Badillo, Irma Lopez-Martínez, José E Ramírez-González, Rita Flores-León, Stephen F Kingsmore, Alison Sanders, Allorah Pradenas, Benjamin White, Gary Matthews, Matt Hale, Ronald W McLawhon, Sharon L Reed, Terri Winbush, Ian H McHardy, Russel A Fielding, Laura Nicholson, Michael M Quigley, Aaron Harding, Art Mendoza, Omid Bakhtar, Sara H Browne, Jocelyn Olivas Flores, Diana G Rincon Rodríguez, Martin Gonzalez Ibarra, Luis C Robles Ibarra, Betsy J Arellano Vera, Jonathan Gonzalez Garcia, Alicia Harvey-Vera, Rob Knight, Louise C Laurent, Gene W Yeo, Joel O Wertheim, Xiang Ji, Michael Worobey, Marc A Suchard, Kristian G Andersen, Abraham Campos-Romero, Shirlee Wohl, Mark ZellerCell2023-12-05
Microbiology of the built environment: harnessing human-associated built environment research to inform the study and design of animal nests and enclosures.Megan S Hill, Jack A GilbertMicrobiology And Molecular Biology Reviews : MMBR2023-12-04
The Group A Streptococcal Vaccine Candidate VAX-A1 Protects against Group B Infection via Cross-Reactive IgG Targeting Virulence Factor C5a Peptidase.Sinead McCabe, Elisabet Bjånes, Astrid Hendriks, Zhen Wang, Nina M van Sorge, Lucy Pill-Pepe, Leslie Bautista, Ellen Chu, Jeroen D C Codée, Jeff Fairman, Neeraj Kapoor, Satoshi Uchiyama, Victor NizetVaccines2023-12-03
The effects of host ecology and phylogeny on gut microbiota (non)parallelism across birds and mammals.Andreas Härer, Diana J RennisonMSphere2023-12-01
Oral magnesium prevents acetaminophen-induced acute liver injury by modulating microbial metabolism.Dongping Li, Yu Chen, Meijuan Wan, Fengyi Mei, Fangzhao Wang, Peng Gu, Xianglong Zhang, Rongjuan Wei, Yunong Zeng, Hanzhao Zheng, Bangguo Chen, Qingquan Xiong, Tao Xue, Tianshan Guan, Jiayin Guo, Yuanxin Tian, Li-Yan Zeng, Zhanguo Liu, Hang Yuan, Ling Yang, Hongbin Liu, Lei Dai, Yao Yu, Yifeng Qiu, Peng Wu, Sanda Win, Tin Aung Than, Riqing Wei, Bernd Schnabl, Neil Kaplowitz, Yong Jiang, Qiang Ma, Peng ChenCell Host & Microbe2023-12-01
Unveiling a CAAX Protease-Like Protein Involved in Didemnin Drug Maturation and Secretion.Xiaolin Zou, Zhen Hui, Robert A Shepherd, Shuaiqiang Zhao, Yanfei Wu, Zhuanglin Shen, Cuiping Pang, Shipeng Zhou, Zehai Yu, Jiahai Zhou, Bradley S Moore, Laura M Sanchez, Xiaoyu TangAdvanced Science (Weinheim, Baden-Wurttemberg, Germany)2023-11-30
Rising global burden of cancer attributable to high BMI from 2010 to 2019.Darren Jun Hao Tan, Cheng Han Ng, Mark Muthiah, Jie Ning Yong, Douglas Chee, Margaret Teng, Zhen Yu Wong, Rebecca Wenling Zeng, Yip Han Chin, Jiong-Wei Wang, Pojsakorn Danpanichkul, Ruveena Bhavani Rajaram, Ramanuj DasGupta, Hiroyuki Suzuki, Hirokazu Takahashi, Nobuharu Tamaki, Yock Young Dan, Rashid Lui, Ajay Duseja, Mohammad Shadab Siddiqui, Khay Guan Yeoh, Arun Sanyal, Karn Wijarnpreecha, Rohit Loomba, Christos Socrates Mantzoros, Daniel Q HuangMetabolism: Clinical And Experimental2023-11-27
Optimizing campus-wide COVID-19 test notifications with interpretable wastewater time-series features using machine learning models.Tuo Lin, Smruthi Karthikeyan, Alysson Satterlund, Robert Schooley, Rob Knight, Victor De Gruttola, Natasha Martin, Jingjing ZouScientific Reports2023-11-24
Global pathogenomic analysis identifies known and candidate genetic antimicrobial resistance determinants in twelve species.Jason C Hyun, Jonathan M Monk, Richard Szubin, Ying Hefner, Bernhard O PalssonNature Communications2023-11-24
High-resolution temporal profiling of E. coli transcriptional response.Arianna Miano, Kevin Rychel, Andrew Lezia, Anand Sastry, Bernhard Palsson, Jeff HastyNature Communications2023-11-22
Time to rethink academic publishing: the peer reviewer crisis.Carolina Tropini, B Brett Finlay, Mark Nichter, Melissa K Melby, Jessica L Metcalf, Maria Gloria Dominguez-Bello, Liping Zhao, Margaret J McFall-Ngai, Naama Geva-Zatorsky, Katherine R Amato, Eduardo A Undurraga, Hendrik N Poinar, Jack A GilbertMBio2023-11-17
Role of Gut Microbiota in Statin-Associated New-Onset Diabetes-a Cross-Sectional and Prospective Analysis of the FINRISK 2002 Cohort.Kari Koponen, Oleg Kambur, Bijoy Joseph, Matti O Ruuskanen, Pekka Jousilahti, Rodolfo Salido, Caitriona Brennan, Mohit Jain, Guillaume Meric, Michael Inouye, Leo Lahti, Teemu Niiranen, Aki S Havulinna, Rob Knight, Veikko SalomaaArteriosclerosis, Thrombosis, And Vascular Biology2023-11-16
Functional annotation of enzyme-encoding genes using deep learning with transformer layers.Gi Bae Kim, Ji Yeon Kim, Jong An Lee, Charles J Norsigian, Bernhard O Palsson, Sang Yup LeeNature Communications2023-11-14
Topical delivery of seriniquinone for treatment of skin cancer and fungal infections is enabled by a liquid crystalline lamellar phase.Rodrigo Dos A Miguel, Amanda S Hirata, Giovanna C Salata, Alexsandra C Apolinário, Vinicius M Barroso, Kelly Ishida, James J La Clair, William Fenical, Tereza S Martins, Leticia V Costa-Lotufo, Luciana B LopesEuropean Journal Of Pharmaceutical Sciences : Official Journal Of The European Federation For Pharmaceutical Sciences2023-11-10
Transcriptomes and metabolism define mouse and human MAIT cell populations.Shilpi Chandra, Gabriel Ascui, Thomas Riffelmacher, Ashu Chawla, Ciro Ramírez-Suástegui, Viankail C Castelan, Gregory Seumois, Hayley Simon, Mallory P Murray, Goo-Young Seo, Ashmitaa L R Premlal, Benjamin Schmiedel, Greet Verstichel, Yingcong Li, Chia-Hao Lin, Jason Greenbaum, John Lamberti, Raghav Murthy, John Nigro, Hilde Cheroutre, Christian H Ottensmeier, Stephen M Hedrick, Li-Fan Lu, Pandurangan Vijayanand, Mitchell KronenbergScience Immunology2023-11-10
Rapid bacteria-phage coevolution drives the emergence of multiscale networks.Joshua M Borin, Justin J Lee, Adriana Lucia-Sanz, Krista R Gerbino, Joshua S Weitz, Justin R MeyerScience (New York, N.Y.)2023-11-09
Universal Digital High Resolution Melt for the detection of pulmonary mold infections.Tyler Goshia, April Aralar, Nathan Wiederhold, Jeffrey D Jenks, Sanjay R Mehta, Mridu Sinha, Aprajita Karmakar, Ankit Sharma, Rachit Shrivastava, Haoxiang Sun, P Lewis White, Martin Hoenigl, Stephanie I FraleyBioRxiv : The Preprint Server For Biology2023-11-09
Remote effects of kidney drug transporter OAT1 on gut microbiome composition and urate homeostasis.Vladimir S Ermakov, Jeffry C Granados, Sanjay K NigamJCI Insight2023-11-08
Development of a Quantitative PCR Method for Detecting Cytolysin in Human Stool Samples.Noemí Cabré, Yongqiang Yang, Yanhan Wang, Bernd SchnablMethods And Protocols2023-11-08
Selective IL-27 production by intestinal regulatory T cells permits gut-specific regulation of T17 cell immunity.Chia-Hao Lin, Cheng-Jang Wu, Sunglim Cho, Rasika Patkar, William J Huth, Ling-Li Lin, Mei-Chi Chen, Elisabeth Israelsson, Joanne Betts, Magdalena Niedzielska, Shefali A Patel, Han G Duong, Romana R Gerner, Chia-Yun Hsu, Matthew Catley, Rose A Maciewicz, Hiutung Chu, Manuela Raffatellu, John T Chang, Li-Fan LuNature Immunology2023-11-06
Jumbo phages are active against extensively drug-resistant eyedrop-associated infections.Ana Georgina Cobián Güemes, Pooja Ghatbale, Alisha N Blanc, Chase J Morgan, Andrew Garcia, Jesse Leonard, Lina Huang, Grace Kovalick, Marissa Proost, Megan Chiu, Peiting Kuo, Joseph Oh, Smruthi Karthikeyan, Rob Knight, Joe Pogliano, Robert T Schooley, David T PrideAntimicrobial Agents And Chemotherapy2023-11-06
Genetic hypogonadal mouse model reveals niche-specific influence of reproductive axis and sex on intestinal microbial communities.Laura Sisk-Hackworth, Jada Brown, Lillian Sau, Andrew A Levine, Lai Ying Ivy Tam, Aishwarya Ramesh, Reeya S Shah, Evelyn T Kelley-Thackray, Sophia Wang, Anita Nguyen, Scott T Kelley, Varykina G ThackrayBiology Of Sex Differences2023-11-06
Clinical Practice Guideline by the Pediatric Infectious Diseases Society (PIDS) and the Infectious Diseases Society of America (IDSA): 2023 Guideline on Diagnosis and Management of Acute Bacterial Arthritis in Pediatrics.Charles R Woods, John S Bradley, Archana Chatterjee, Matthew P Kronman, Sandra R Arnold, Joan Robinson, Lawson A Copley, Antonio Arrieta, Sandra L Fowler, Christopher Harrison, Stephen C Eppes, C Buddy Creech, Laura P Stadler, Samir S Shah, Lynnette J Mazur, Maria A Carrillo-Marquez, Coburn H Allen, Valéry LavergneJournal Of The Pediatric Infectious Diseases Society2023-11-06
A combined adjuvant approach primes robust germinal center responses and humoral immunity in non-human primates.Ivy Phung, Kristen A Rodrigues, Ester Marina-Zárate, Laura Maiorino, Bapi Pahar, Wen-Hsin Lee, Mariane Melo, Amitinder Kaur, Carolina Allers, Marissa Fahlberg, Brooke F Grasperge, Jason P Dufour, Faith Schiro, Pyone P Aye, Paul G Lopez, Jonathan L Torres, Gabriel Ozorowski, Saman Eskandarzadeh, Michael Kubitz, Erik Georgeson, Bettina Groschel, Rebecca Nedellec, Michael Bick, Katarzyna Kaczmarek Michaels, Hongmei Gao, Xiaoying Shen, Diane G Carnathan, Guido Silvestri, David C Montefiori, Andrew B Ward, Lars Hangartner, Ronald S Veazey, Dennis R Burton, William R Schief, Darrell J Irvine, Shane CrottyNature Communications2023-11-04
Postacute Sequelae of SARS-CoV-2 in Children.Suchitra Rao, Rachel S Gross, Sindhu Mohandas, Cheryl R Stein, Abigail Case, Benard Dreyer, Nathan M Pajor, H Timothy Bunnell, David Warburton, Elizabeth Berg, Jonathan B Overdevest, Mark Gorelik, Joshua Milner, Sejal Saxena, Ravi Jhaveri, John C Wood, Kyung E Rhee, Rebecca Letts, Christine Maughan, Nick Guthe, Leah Castro-Baucom, Melissa S StockwellPediatrics2023-11-01
Returning incidentally discovered Hepatitis C RNA-seq results to COPDGene study participants.Edwin K Silverman, Arthur Y Kim, Barry J Make, Elizabeth A Regan, Jarrett D Morrow, Craig P Hersh, James O'Brien, James D Crapo, Nadia N Hansel, Gerard Criner, Eric L Flenaugh, Douglas Conrad, Richard Casaburi, Russell P Bowler, Nicola A Hanania, R Graham Barr, Surya P Bhatt, Frank C Sciurba, Antonio Anzueto, MeiLan K Han, Charlene E McEvoy, Alejandro P Comellas, Dawn L DeMeo, Richard Rosiello, Jeffrey L Curtis, Tricia Uchida, Carla Wilson, P Pearl O'RourkeNPJ Genomic Medicine2023-10-31
Cholesterol esterification and p53-mediated tumor suppression.Youjun Li, Michael Karin, Edward V ProchownikExploration Of Targeted Anti-tumor Therapy2023-10-31
Genome-scale metabolic modeling of the human gut bacterium Bacteroides fragilis strain 638R.Maxwell Neal, Deepan Thiruppathy, Karsten ZenglerPLoS Computational Biology2023-10-30
Deciphering the 'gut-brain axis' through microbiome diversity.Jinyuan Liu, Ke Xu, Tsungchin Wu, Lydia Yao, Tanya T Nguyen, Dilip Jeste, Xinlian ZhangGeneral Psychiatry2023-10-29
HIV-1 Remission: Accelerating the Path to Permanent HIV-1 Silencing.Danielle E Lyons, Priti Kumar, Nadia R Roan, Patricia A Defechereux, Cedric Feschotte, Ulrike C Lange, Niren Murthy, Pauline Sameshima, Eric Verdin, Julie A Ake, Matthew S Parsons, Avindra Nath, Sara Gianella, Davey M Smith, Esper G Kallas, Thomas J Villa, Richard Strange, Betty Mwesigwa, Robert L Furler O'Brien, Douglas F Nixon, Lishomwa C Ndhlovu, Susana T Valente, Melanie OttViruses2023-10-28
Domestication shapes the pig gut microbiome and immune traits from the scale of lineage to population.Sahana Kuthyar, Jessica Diaz, Fabiola Avalos-Villatoro, Christian Maltecca, Francesco Tiezzi, Robert R Dunn, Aspen T ReeseJournal Of Evolutionary Biology2023-10-26
Conceptual risk assessment of mosquito population modification gene-drive systems to control malaria transmission: preliminary hazards list workshops.Ana Kormos, George Dimopoulos, Ethan Bier, Gregory C Lanzaro, John M Marshall, Anthony A JamesFrontiers In Bioengineering And Biotechnology2023-10-26
Metabolic dysregulation and gut dysbiosis linked to hyperandrogenism in female mice.Annie Chen, Alex Handzel, Lillian Sau, Laura Cui, Scott T Kelley, Varykina G ThackrayEndocrinology, Diabetes & Metabolism2023-10-23
Life after a fiery death: Fire and plant biomass loading affect dissolved organic matter in experimental ponds.Cody J Spiegel, Natalie Mladenov, Christopher B Wall, Kelly Hollman, Cindy H Tran, Celia C Symons, Jonathan B ShurinGlobal Change Biology2023-10-19
Author Correction: Greengenes2 unifies microbial data in a single reference tree.Daniel McDonald, Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio Gonzalez, James T Morton, Giorgia Nicolaou, Donovan H Parks, Søren M Karst, Mads Albertsen, Philip Hugenholtz, Todd DeSantis, Se Jin Song, Andrew Bartko, Aki S Havulinna, Pekka Jousilahti, Susan Cheng, Michael Inouye, Teemu Niiranen, Mohit Jain, Veikko Salomaa, Leo Lahti, Siavash Mirarab, Rob KnightNature Biotechnology2023-10-18
Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation.Julia M Gauglitz, Kiana A West, Wout Bittremieux, Candace L Williams, Kelly C Weldon, Morgan Panitchpakdi, Francesca Di Ottavio, Christine M Aceves, Elizabeth Brown, Nicole C Sikora, Alan K Jarmusch, Cameron Martino, Anupriya Tripathi, Michael J Meehan, Kathleen Dorrestein, Justin P Shaffer, Roxana Coras, Fernando Vargas, Lindsay DeRight Goldasich, Tara Schwartz, MacKenzie Bryant, Gregory Humphrey, Abigail J Johnson, Katharina Spengler, Pedro Belda-Ferre, Edgar Diaz, Daniel McDonald, Qiyun Zhu, Emmanuel O Elijah, Mingxun Wang, Clarisse Marotz, Kate E Sprecher, Daniela Vargas-Robles, Dana Withrow, Gail Ackermann, Lourdes Herrera, Barry J Bradford, Lucas Maciel Mauriz Marques, Juliano Geraldo Amaral, Rodrigo Moreira Silva, Flavio Protasio Veras, Thiago Mattar Cunha, Rene Donizeti Ribeiro Oliveira, Paulo Louzada-Junior, Robert H Mills, Paulina K Piotrowski, Stephanie L Servetas, Sandra M Da Silva, Christina M Jones, Nancy J Lin, Katrice A Lippa, Scott A Jackson, Rima Kaddurah Daouk, Douglas Galasko, Parambir S Dulai, Tatyana I Kalashnikova, Curt Wittenberg, Robert Terkeltaub, Megan M Doty, Jae H Kim, Kyung E Rhee, Julia Beauchamp-Walters, Kenneth P Wright, Maria Gloria Dominguez-Bello, Mark Manary, Michelli F Oliveira, Brigid S Boland, Norberto Peporine Lopes, Monica Guma, Austin D Swafford, Rachel J Dutton, Rob Knight, Pieter C DorresteinNature Biotechnology2023-10-18
Author Correction: Generation of accurate, expandable phylogenomic trees with uDance.Metin Balaban, Yueyu Jiang, Qiyun Zhu, Daniel McDonald, Rob Knight, Siavash MirarabNature Biotechnology2023-10-18
People with HIV at the end of life and their next-of-kin/loved ones are willing to participate in interventional HIV cure-related research.Samuel O Ndukwe, Hursch Patel, Brittany Shelton, Susanna Concha-Garcia, Cheryl Dullano, Stephanie Solso, Steven Hendrickx, Patricia K Riggs, Thomas J Villa, Andy Kaytes, Jeff Taylor, Susan J Little, David Lessard, Anish K Arora, Cecilia T Costiniuk, Shadi Eskaf, Davey M Smith, Sara Gianella, Karine DubéAIDS (London, England)2023-10-18
Valence-driven colorimetric detection of norovirus protease peptide-AuNP interactions.Chuxuan Ling, Zhicheng Jin, Justin Yeung, Elany Barbosa da Silva, Yu-Ci Chang, Tengyu He, Wonjun Yim, Anthony J O'Donoghue, Jesse V JokerstChemical Communications (Cambridge, England)2023-10-17
Microbiologist in the clinic: coitally related symptoms with negative urine cultures.Linda Brubaker, Harry Horsley, Rajvinder Khasriya, Alan J WolfeInternational Urogynecology Journal2023-10-14
Humanized Anti-Carcinoembryonic Antigen Antibodies Brightly Target and Label Gastric Cancer in Orthotopic Mouse Models.Kristin E Cox, Michael A Turner, Siamak Amirfakhri, Thinzar M Lwin, Mojgan Hosseini, Pradipta Ghosh, Marygorret Obonyo, Takashi Murakami, Robert M Hoffman, Paul J Yazaki, Michael BouvetThe Journal Of Surgical Research2023-10-13
Biocontrol in built environments to reduce pathogen exposure and infection risk.Neil R Gottel, Megan S Hill, Maxwell J Neal, Sarah M Allard, Karsten Zengler, Jack A GilbertThe ISME Journal2023-10-09
An update on current and novel molecular diagnostics for the diagnosis of invasive fungal infections.Jeffrey D Jenks, P Lewis White, Sarah E Kidd, Tyler Goshia, Stephanie I Fraley, Martin Hoenigl, George R ThompsonExpert Review Of Molecular Diagnostics2023-10-06
Using Multidimensional Separations to Distinguish Isomeric Amino Acid-Bile Acid Conjugates and Assess Their Presence and Perturbations in Model Systems.Allison K Stewart, Matthew H Foley, Michael K Dougherty, Sarah K McGill, Ajay S Gulati, Emily C Gentry, Lee R Hagey, Pieter C Dorrestein, Casey M Theriot, James N Dodds, Erin S BakerAnalytical Chemistry2023-10-05
The Challenge of Extensively Drug-resistant Gram-negative Pathogens in Children: Newer Antibiotics and When to Use Them for Empiric and Definitive Therapy.Elias Iosifidis, John S BradleyThe Pediatric Infectious Disease Journal2023-10-05
Glycoproteomic landscape and structural dynamics of TIM family immune checkpoints enabled by mucinase SmE.Joann Chongsaritsinsuk, Alexandra D Steigmeyer, Keira E Mahoney, Mia A Rosenfeld, Taryn M Lucas, Courtney M Smith, Alice Li, Deniz Ince, Fiona L Kearns, Alexandria S Battison, Marie A Hollenhorst, D Judy Shon, Katherine H Tiemeyer, Victor Attah, Catherine Kwon, Carolyn R Bertozzi, Michael J Ferracane, Mark A Lemmon, Rommie E Amaro, Stacy A MalakerNature Communications2023-10-04
Human Milk Bioactive Components and Child Growth and Body Composition in the First 2 Years: A Systematic Review.Meredith Merilee Brockway, Allison I Daniel, Sarah M Reyes, Julia M Gauglitz, Matthew Granger, Joann M McDermid, Deborah Chan, Rebecca Refvik, Karanbir K Sidhu, Suad Musse, Pooja P Patel, Caroline Monnin, Larisa Lotoski, Donna T Geddes, Fyezah Jehan, Patrick Kolsteren, Lars Bode, Kamilla G Eriksen, Lindsay H Allen, Daniela Hampel, Natalie Rodriguez, Meghan B AzadAdvances In Nutrition (Bethesda, Md.)2023-10-04
Argonaute reduces natural transformation efficiency and provides immunity against exogenous plasmids.Arnaud Taton, Tami S Gilderman, Dustin C Ernst, Carla A Omaga, Lucas A Cohen, Camilo Rey-Bedon, James W Golden, Susan S GoldenMBio2023-10-04
GWAS Meta-Analysis of Suicide Attempt: Identification of 12 Genome-Wide Significant Loci and Implication of Genetic Risks for Specific Health Factors.Anna R Docherty, Niamh Mullins, Allison E Ashley-Koch, Xuejun Qin, Jonathan R I Coleman, Andrey Shabalin, JooEun Kang, Balasz Murnyak, Frank Wendt, Mark Adams, Adrian I Campos, Emily DiBlasi, Janice M Fullerton, Henry R Kranzler, Amanda V Bakian, Eric T Monson, Miguel E Rentería, Consuelo Walss-Bass, Ole A Andreassen, Chittaranjan Behera, Cynthia M Bulik, Howard J Edenberg, Ronald C Kessler, J John Mann, John I Nurnberger, Giorgio Pistis, Fabian Streit, Robert J Ursano, Renato Polimanti, Michelle Dennis, Melanie Garrett, Lauren Hair, Philip Harvey, Elizabeth R Hauser, Michael A Hauser, Jennifer Huffman, Daniel Jacobson, Ravi Madduri, Benjamin McMahon, David W Oslin, Jodie Trafton, Swapnil Awasthi, Wade H Berrettini, Martin Bohus, Xiao Chang, Hsi-Chung Chen, Wei J Chen, Erik D Christensen, Scott Crow, Philibert Duriez, Alexis C Edwards, Fernando Fernández-Aranda, Hanga Galfalvy, Michael Gandal, Philip Gorwood, Yiran Guo, Jonathan D Hafferty, Hakon Hakonarson, Katherine A Halmi, Akitoyo Hishimoto, Sonia Jain, Stéphane Jamain, Susana Jiménez-Murcia, Craig Johnson, Allan S Kaplan, Walter H Kaye, Pamela K Keel, James L Kennedy, Minsoo Kim, Kelly L Klump, Daniel F Levey, Dong Li, Shih-Cheng Liao, Klaus Lieb, Lisa Lilenfeld, Christian R Marshall, James E Mitchell, Satoshi Okazaki, Ikuo Otsuka, Dalila Pinto, Abigail Powers, Nicolas Ramoz, Stephan Ripke, Stefan Roepke, Vsevolod Rozanov, Stephen W Scherer, Christian Schmahl, Marcus Sokolowski, Anna Starnawska, Michael Strober, Mei-Hsin Su, Laura M Thornton, Janet Treasure, Erin B Ware, Hunna J Watson, Stephanie H Witt, D Blake Woodside, Zeynep Yilmaz, Lea Zillich, Rolf Adolfsson, Ingrid Agartz, Martin Alda, Lars Alfredsson, Vivek Appadurai, María Soler Artigas, Sandra Van der Auwera, M Helena Azevedo, Nicholas Bass, Claiton H D Bau, Bernhard T Baune, Frank Bellivier, Klaus Berger, Joanna M Biernacka, Tim B Bigdeli, Elisabeth B Binder, Michael Boehnke, Marco P Boks, David L Braff, Richard Bryant, Monika Budde, Enda M Byrne, Wiepke Cahn, Enrique Castelao, Jorge A Cervilla, Boris Chaumette, Aiden Corvin, Nicholas Craddock, Srdjan Djurovic, Jerome C Foo, Andreas J Forstner, Mark Frye, Justine M Gatt, Ina Giegling, Hans J Grabe, Melissa J Green, Eugenio H Grevet, Maria Grigoroiu-Serbanescu, Blanca Gutierrez, Jose Guzman-Parra, Marian L Hamshere, Annette M Hartmann, Joanna Hauser, Stefanie Heilmann-Heimbach, Per Hoffmann, Marcus Ising, Ian Jones, Lisa A Jones, Lina Jonsson, René S Kahn, John R Kelsoe, Kenneth S Kendler, Stefan Kloiber, Karestan C Koenen, Manolis Kogevinas, Marie-Odile Krebs, Mikael Landén, Marion Leboyer, Phil H Lee, Douglas F Levinson, Calwing Liao, Jolanta Lissowska, Fermin Mayoral, Susan L McElroy, Patrick McGrath, Peter McGuffin, Andrew McQuillin, Divya Mehta, Ingrid Melle, Philip B Mitchell, Esther Molina, Gunnar Morken, Caroline Nievergelt, Markus M Nöthen, Michael C O'Donovan, Roel A Ophoff, Michael J Owen, Carlos Pato, Michele T Pato, Brenda W J H Penninx, James B Potash, Robert A Power, Martin Preisig, Digby Quested, Josep Antoni Ramos-Quiroga, Andreas Reif, Marta Ribasés, Vanesa Richarte, Marcella Rietschel, Margarita Rivera, Andrea Roberts, Gloria Roberts, Guy A Rouleau, Diego L Rovaris, Alan R Sanders, Peter R Schofield, Thomas G Schulze, Laura J Scott, Alessandro Serretti, Jianxin Shi, Lea Sirignano, Pamela Sklar, Olav B Smeland, Jordan W Smoller, Edmund J S Sonuga-Barke, Maciej Trzaskowski, Ming T Tsuang, Gustavo Turecki, Laura Vilar-Ribó, John B Vincent, Henry Völzke, James T R Walters, Cynthia Shannon Weickert, Thomas W Weickert, Myrna M Weissman, Leanne M Williams, Naomi R Wray, Clement C Zai, Esben Agerbo, Anders D Børglum, Gerome Breen, Ditte Demontis, Annette Erlangsen, Joel Gelernter, Stephen J Glatt, David M Hougaard, Hai-Gwo Hwu, Po-Hsiu Kuo, Cathryn M Lewis, Qingqin S Li, Chih-Min Liu, Nicholas G Martin, Andrew M McIntosh, Sarah E Medland, Ole Mors, Merete Nordentoft, Catherine M Olsen, David Porteous, Daniel J Smith, Eli A Stahl, Murray B Stein, Danuta Wasserman, Thomas Werge, David C Whiteman, Virginia Willour, , , , , , , , , Hilary Coon, Jean C Beckham, Nathan A Kimbrel, Douglas M RuderferThe American Journal Of Psychiatry2023-10-01
A broad-based probe-free qPCR assay for detection and discrimination of three human herpes viruses.Anshu Gupta, Shelley M Lawrence, Stephanie I FraleyJournal Of Virological Methods2023-09-29
Oral fungal profiling and risk of nasopharyngeal carcinoma: a population-based case-control study.Yufeng Chen, Wanxin Li, Ellen T Chang, Justine W Debelius, Lokeshwaran Manoharan, Yuming Zheng, Yancheng Li, Guangwu Huang, Hans-Olov Adami, Rob Knight, Yonglin Cai, Zhe Zhang, Weimin YeEBioMedicine2023-09-28
Directed evolution unlocks oxygen reactivity for a nicotine-degrading flavoenzyme.Mark Dulchavsky, Rishav Mitra, Kevin Wu, Joshua Li, Karli Boer, Xiaomeng Liu, Zhiyao Zhang, Cristian Vasquez, Christopher T Clark, Kaitrin Funckes, Kokila Shankar, Selene Bonnet-Zahedi, Mohammad Siddiq, Yadira Sepulveda, Raymond T Suhandynata, Jeremiah D Momper, Antonio N Calabrese, Olivier George, Frederick Stull, James C A BardwellNature Chemical Biology2023-09-28
A Malassezia pseudoprotease dominates the secreted hydrolase landscape and is a potential allergen on skin.Wisely Chua, Carl O Marsh, Si En Poh, Winston Lc Koh, Melody Li Ying Lee, Li Fang Koh, Xin-Zi Emily Tang, Peter See, Zheng Ser, Shi Mei Wang, Radoslaw M Sobota, Thomas L Dawson, Yik Weng Yew, Steven Thng, Anthony J O' Donoghue, Hazel H Oon, John E Common, Hao LiBiochimie2023-09-23
Phage therapy: Targeting intestinal bacterial microbiota for the treatment of liver diseases.Jumpei Fujiki, Bernd SchnablJHEP Reports : Innovation In Hepatology2023-09-23
Validating Tools to Detect and Inactivate Monkeypox Virus in Human Milk.Alex E Clark, Annalee Furst, Kristija Sejane, Lisa Stellwagen, Marissa Proost, David Pride, Davey M Smith, Aaron F Carlin, Lars BodeBreastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine2023-09-21
Assessing the validity of fecal sampling for characterizing variation in threespine stickleback's gut microbiota.Andreas Härer, Diana J RennisonPloS One2023-09-21
Discrimination of cell-intrinsic and environment-dependent effects of natural genetic variation on Kupffer cell epigenomes and transcriptomes.Hunter Bennett, Ty D Troutman, Enchen Zhou, Nathanael J Spann, Verena M Link, Jason S Seidman, Christian K Nickl, Yohei Abe, Mashito Sakai, Martina P Pasillas, Justin M Marlman, Carlos Guzman, Mojgan Hosseini, Bernd Schnabl, Christopher K GlassNature Immunology2023-09-21
Linking bacterial tetrabromopyrrole biosynthesis to coral metamorphosis.Amanda T Alker, Morgan V Farrell, Alyssa M Demko, Trevor N Purdy, Sanjoy Adak, Bradley S Moore, Jennifer M Sneed, Valerie J Paul, Nicholas J ShikumaISME Communications2023-09-19
Gardnerella vaginolysin potentiates glycan molecular mimicry by Neisseria gonorrhoeae.Sydney R Morrill, Sudeshna Saha, Ajit P Varki, Warren G Lewis, Sanjay Ram, Amanda L LewisThe Journal Of Infectious Diseases2023-09-18
Gut microbiota parallelism and divergence associated with colonisation of novel habitats.Andreas Härer, Alexander A Mauro, Telma G Laurentino, Erica B Rosenblum, Diana J RennisonMolecular Ecology2023-09-16
Universal Viral Screening of Newly Diagnosed Cancer Patients in the United States: A Cost Efficiency Evaluation.Riha Vaidya, Joseph M Unger, Rohit Loomba, Jessica P Hwang, Rashmi Chugh, Monica A Tincopa, Kathryn B Arnold, Dawn L Hershman, Scott D RamseyCancer Research Communications2023-09-14
Sample preconcentration through airjet-induced liquid phase enrichment.Edward Wang, Louise C Laurent, Drew A Hall, Yu-Hwa LoLab On A Chip2023-09-13
Laboratory evolution, transcriptomics, and modeling reveal mechanisms of paraquat tolerance.Kevin Rychel, Justin Tan, Arjun Patel, Cameron Lamoureux, Ying Hefner, Richard Szubin, Josefin Johnsen, Elsayed Tharwat Tolba Mohamed, Patrick V Phaneuf, Amitesh Anand, Connor A Olson, Joon Ho Park, Anand V Sastry, Laurence Yang, Adam M Feist, Bernhard O PalssonCell Reports2023-09-13
Sialic Acid-Siglec-E Interactions Regulate the Response of Neonatal Macrophages to Group B Streptococcus.Sean J Lund, Pamela G B Del Rosario, Asami Honda, Kaitlin J Caoili, Marten A Hoeksema, Victor Nizet, Kathryn A Patras, Lawrence S PrinceImmunoHorizons2023-09-13
Subgroup analysis of phase 2 study of ceftolozane/tazobactam in neonates and young infants with pyelonephritis.Emmanuel Roilides, John S Bradley, Julia Lonchar, Jennifer A Huntington, Prachi Wickremasingha, Feng-Hsiu Su, Christopher J Bruno, Matthew G JohnsonMicrobiology Spectrum2023-09-12
The silent burden of non-alcoholic fatty liver disease in the elderly: A global burden of disease analysis.Pojsakorn Danpanichkul, Cheng Han Ng, Mark D Muthiah, Kwanjit Duangsonk, Jie Ning Yong, Darren Jun Hao Tan, Wen Hui Lim, Zhen Yu Wong, Nicholas Syn, Tsubasa Tsusumi, Hirokazu Takahashi, Mohammad Shadab Siddiqui, Vincent Wai-Sun Wong, Christos S Mantzoros, Daniel Q Huang, Mazen Noureddin, Rohit Loomba, Arun J Sanyal, Karn WijarnpreechaAlimentary Pharmacology & Therapeutics2023-09-11
An approach to zwitterionic peptide design for colorimetric detection of the Southampton norovirus SV3CP protease.Justin Yeung, Zhicheng Jin, Chuxuan Ling, Maurice Retout, Elany Barbosa da Silva, Manan Damani, Yu-Ci Chang, Wonjun Yim, Anthony J O'Donoghue, Jesse V JokerstThe Analyst2023-09-11
Design of synthetic bacterial biosensors.Alyssa J Chiang, Jeff HastyCurrent Opinion In Microbiology2023-09-11
Metabolic engineering of Synechococcus elongatus 7942 for enhanced sucrose biosynthesis.Bo Wang, Cristal Zuniga, Michael T Guarnieri, Karsten Zengler, Michael Betenbaugh, Jamey D YoungMetabolic Engineering2023-09-05
Reply to Augello, P.A.; Wu, J. Comment on "Rogers et al. The Combined Effects of Cannabis, Methamphetamine, and HIV on Neurocognition. 2023, , 674".Jeffrey M Rogers, Jennifer E Iudicello, Maria Cecilia G Marcondes, Erin E Morgan, Mariana Cherner, Ronald J Ellis, Scott L Letendre, Robert K Heaton, Igor GrantViruses2023-09-05
A multi-scale expression and regulation knowledge base for Escherichia coli.Cameron R Lamoureux, Katherine T Decker, Anand V Sastry, Kevin Rychel, Ye Gao, John Luke McConn, Daniel C Zielinski, Bernhard O PalssonNucleic Acids Research2023-09-05
Similarities in the induction of the intracellular pathogen response in Caenorhabditis elegans and the type I interferon response in mammals.Vladimir Lažetić, Lakshmi E Batachari, Alistair B Russell, Emily R TroemelBioEssays : News And Reviews In Molecular, Cellular And Developmental Biology2023-09-04
Microbiomes and metabolomes of dominant coral reef primary producers illustrate a potential role for immunolipids in marine symbioses.Helena Mannochio-Russo, Sean O I Swift, Kirsten K Nakayama, Christopher B Wall, Emily C Gentry, Morgan Panitchpakdi, Andrés M Caraballo-Rodriguez, Allegra T Aron, Daniel Petras, Kathleen Dorrestein, Tatiana K Dorrestein, Taylor M Williams, Eileen M Nalley, Noam T Altman-Kurosaki, Mike Martinelli, Jeff Y Kuwabara, John L Darcy, Vanderlan S Bolzani, Linda Wegley Kelly, Camilo Mora, Joanne Y Yew, Anthony S Amend, Margaret McFall-Ngai, Nicole A Hynson, Pieter C Dorrestein, Craig E NelsonCommunications Biology2023-08-31
Portosystemic shunt placement reveals blood signatures for the development of hepatic encephalopathy through mass spectrometry.Ana Carolina Dantas Machado, Stephany Flores Ramos, Julia M Gauglitz, Anne-Marie Fassler, Daniel Petras, Alexander A Aksenov, Un Bi Kim, Michael Lazarowicz, Abbey Barnard Giustini, Hamed Aryafar, Irine Vodkin, Curtis Warren, Pieter C Dorrestein, Ali Zarrinpar, Amir ZarrinparNature Communications2023-08-31
Metabolic programs of T cell tissue residency empower tumour immunity.Miguel Reina-Campos, Maximilian Heeg, Kelly Kennewick, Ian T Mathews, Giovanni Galletti, Vida Luna, Quynhanh Nguyen, Hongling Huang, J Justin Milner, Kenneth H Hu, Amy Vichaidit, Natalie Santillano, Brigid S Boland, John T Chang, Mohit Jain, Sonia Sharma, Matthew F Krummel, Hongbo Chi, Steven J Bensinger, Ananda W GoldrathNature2023-08-30
Urine Excretion, Organ Distribution, and Placental Transfer of 6PPD and 6PPD-Quinone in Mice and Potential Developmental Toxicity through Nuclear Receptor Pathways.Haoqi Nina Zhao, Sydney P Thomas, Mark J Zylka, Pieter C Dorrestein, Wenxin HuEnvironmental Science & Technology2023-08-29
Targeted and Logical Discovery of Piperazic Acid-Bearing Natural Products Based on Genomic and Spectroscopic Signatures.Daniel Shin, Woong Sub Byun, Sangwook Kang, Ilnam Kang, Eun Seo Bae, Joon Soo An, Ji Hyeon Im, Jiyoon Park, Eunji Kim, Keebeom Ko, Sunghoon Hwang, Honghui Lee, Yun Kwon, Yoon-Joo Ko, Suckchang Hong, Sang-Jip Nam, Seung Bum Kim, William Fenical, Yeo Joon Yoon, Jang-Cheon Cho, Sang Kook Lee, Dong-Chan OhJournal Of The American Chemical Society2023-08-29
Sex hormones, the stool microbiome, and subclinical atherosclerosis in women with and without HIV.Brandilyn A Peters, David B Hanna, Yi Wang, Kathleen M Weber, Elizabeth Topper, Allison A Appleton, Anjali Sharma, Howard N Hodis, Nanette Santoro, Chantal Guillemette, Patrick Caron, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin QiThe Journal Of Clinical Endocrinology And Metabolism2023-08-29
Machine learning uncovers the transcriptome in microbial communities and during infection.Heera Bajpe, Kevin Rychel, Cameron R Lamoureux, Anand V Sastry, Bernhard O PalssonMSystems2023-08-28
Rescues Allergic Contact Dermatitis in Sphingosine 1-Phosphate Receptor 2-Deficient Skin.Kana Masuda-Kuroki, Shahrzad Alimohammadi, Anna Di NardoInternational Journal Of Molecular Sciences2023-08-25
Epidemiology of pediatric astrovirus gastroenteritis in a Nicaraguan birth cohort.Rebecca J Rubinstein, Yaoska Reyes, Fredman González, Lester Gutiérrez, Christian Toval-Ruíz, Kelli Hammond, Lars Bode, Jan Vinjé, Samuel Vilchez, Sylvia Becker-Dreps, Filemón Bucardo, Nadja A VielotMedRxiv : The Preprint Server For Health Sciences2023-08-25
Gut microbiota and fecal short chain fatty acids differ with adiposity and country of origin: the METS-microbiome study.Gertrude Ecklu-Mensah, Candice Choo-Kang, Maria Gjerstad Maseng, Sonya Donato, Pascal Bovet, Bharathi Viswanathan, Kweku Bedu-Addo, Jacob Plange-Rhule, Prince Oti Boateng, Terrence E Forrester, Marie Williams, Estelle V Lambert, Dale Rae, Nandipha Sinyanya, Amy Luke, Brian T Layden, Stephen O'Keefe, Jack A Gilbert, Lara R DugasNature Communications2023-08-24
Ramipril for the Treatment of COVID-19: RAMIC, a Randomized, Double-Blind, Placebo-Controlled Clinical Trial.Daniel Q Huang, Veeral Ajmera, Christian Tomaszewski, Andrew LaFree, Ricki Bettencourt, Wesley K Thompson, Davey M Smith, Atul Malhotra, Ravindra L Mehta, Vaishal Tolia, Jeffrey Yin, Paul A Insel, Stone Leachman, Jinho Jung, Summer Collier, Lisa Richards, Kristin Woods, Maral Amangurbanova, Archana Bhatt, Xinlian Zhang, Oana M Penciu, Stuart Zarich, Tamrat Retta, Michelle S Harkins, J Pedro Teixeira, Brian Chinnock, Netanya S Utay, Jordan E Lake, Rohit LoombaAdvances In Therapy2023-08-24
Staphylococcus epidermidis activates keratinocyte cytokine expression and promotes skin inflammation through the production of phenol-soluble modulins.Michael R Williams, Michelle D Bagood, Timothy J Enroth, Zoie L Bunch, Nina Jiang, Edward Liu, Samia Almoughrabie, Shadi Khalil, Fengwu Li, Samantha Brinton, Nadja B Cech, Alexander R Horswill, Richard L GalloCell Reports2023-08-22
A Protease-Responsive Polymer/Peptide Conjugate and Reversible Assembly of Silver Clusters for the Detection of Enzymatic Activity.Maurice Retout, Lubna Amer, Wonjun Yim, Matthew N Creyer, Benjamin Lam, Diego F Trujillo, Jan Potempa, Anthony J O'Donoghue, Casey Chen, Jesse V JokerstACS Nano2023-08-21
Commensal induce epidermal lipid synthesis important for skin barrier function.Samia Almoughrabie, Laura Cau, Kellen Cavagnero, Alan M O'Neill, Fengwu Li, Andrea Roso-Mares, Carine Mainzer, Brigitte Closs, Matthew J Kolar, Kevin J Williams, Steven J Bensinger, Richard L GalloScience Advances2023-08-18
Paired microbiome and metabolome analyses associate bile acid changes with colorectal cancer progression.Ting Fu, Tao Huan, Gibraan Rahman, Hui Zhi, Zhenjiang Xu, Tae Gyu Oh, Jian Guo, Sally Coulter, Anupriya Tripathi, Cameron Martino, Justin L McCarville, Qiyun Zhu, Fritz Cayabyab, Brian Low, Mingxiao He, Shipei Xing, Fernando Vargas, Ruth T Yu, Annette Atkins, Christopher Liddle, Janelle Ayres, Manuela Raffatellu, Pieter C Dorrestein, Michael Downes, Rob Knight, Ronald M EvansCell Reports2023-08-18
Diagnosis of childhood febrile illness using a multi-class blood RNA molecular signature.Dominic Habgood-Coote, Clare Wilson, Chisato Shimizu, Anouk M Barendregt, Ria Philipsen, Rachel Galassini, Irene Rivero Calle, Lesley Workman, Philipp K A Agyeman, Gerben Ferwerda, Suzanne T Anderson, J Merlijn van den Berg, Marieke Emonts, Enitan D Carrol, Colin G Fink, Ronald de Groot, Martin L Hibberd, John Kanegaye, Mark P Nicol, Stéphane Paulus, Andrew J Pollard, Antonio Salas, Fatou Secka, Luregn J Schlapbach, Adriana H Tremoulet, Michael Walther, Werner Zenz, , , , , , Michiel Van der Flier, Heather J Zar, Taco Kuijpers, Jane C Burns, Federico Martinón-Torres, Victoria J Wright, Lachlan J M Coin, Aubrey J Cunnington, Jethro A Herberg, Michael Levin, Myrsini KaforouMed (New York, N.Y.)2023-08-11
Engineered bacteria detect tumor DNA.Robert M Cooper, Josephine A Wright, Jia Q Ng, Jarrad M Goyne, Nobumi Suzuki, Young K Lee, Mari Ichinose, Georgette Radford, Feargal J Ryan, Shalni Kumar, Elaine M Thomas, Laura Vrbanac, Rob Knight, Susan L Woods, Daniel L Worthley, Jeff HastyScience (New York, N.Y.)2023-08-10
A metabolite from commensal Candida albicans enhances the bactericidal activity of macrophages and protects against sepsis.Peng Gu, Ruofan Liu, Qin Yang, Li Xie, Rongjuan Wei, Jiaxin Li, Fengyi Mei, Tao Chen, Zhenhua Zeng, Yan He, Hongwei Zhou, Hongjuan Peng, Kutty Selva Nandakumar, Huikuan Chu, Yong Jiang, Wei Gong, Ye Chen, Bernd Schnabl, Peng ChenCellular & Molecular Immunology2023-08-09
The genome-scale metabolic model for the purple non-sulfur bacterium Rhodopseudomonas palustris Bis A53 accurately predicts phenotypes under chemoheterotrophic, chemoautotrophic, photoheterotrophic, and photoautotrophic growth conditions.Diego Tec-Campos, Camila Posadas, Juan D Tibocha-Bonilla, Deepan Thiruppathy, Nathan Glonek, Cristal Zuñiga, Alejandro Zepeda, Karsten ZenglerPLoS Computational Biology2023-08-09
Reconstruction of the last bacterial common ancestor from 183 pangenomes reveals a versatile ancient core genome.Jason C Hyun, Bernhard O PalssonGenome Biology2023-08-08
Phenotypically complex living materials containing engineered cyanobacteria.Debika Datta, Elliot L Weiss, Daniel Wangpraseurt, Erica Hild, Shaochen Chen, James W Golden, Susan S Golden, Jonathan K PokorskiNature Communications2023-08-07
Meditation-induced bloodborne factors as an adjuvant treatment to COVID-19 disease.Juan P Zuniga-Hertz, Ramamurthy Chitteti, Joe Dispenza, Raphael Cuomo, Jacqueline A Bonds, Elena L Kopp, Sierra Simpson, Jonathan Okerblom, Svetlana Maurya, Brinda K Rana, Atsushi Miyonahara, Ingrid R Niesman, Jacqueline Maree, Gianna Belza, Hillari D Hamilton, Carla Stanton, David J Gonzalez, Michelle A Poirier, Tobias Moeller-Bertram, Hemal H PatelBrain, Behavior, & Immunity - Health2023-08-07
The cervical microbiota of Hispanics living in Puerto Rico is nonoptimal regardless of HPV status.Daniela Vargas-Robles, Josefina Romaguera, Ian Alvarado-Velez, Eduardo Tosado-Rodríguez, Anelisse Dominicci-Maura, Maria Sanchez, Kara J Wiggin, Magaly Martinez-Ferrer, Jack A Gilbert, Larry J Forney, Filipa Godoy-VitorinoMSystems2023-08-03
A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data.Pieter Dorrestein, Simone Zuffa, Robin Schmid, Anelize Bauermeister, Paulo Wender Portal Gomes, Andres Caraballo-Rodriguez, Yasin El Abiead, Allegra Aron, Emily Gentry, Jasmine Zemlin, Michael Meehan, Nicole Avalon, Robert Cichewicz, Ekaterina Buzun, Marvic Carrillo-Terrazas, Chia-Yun Hsu, Renee Oles, Adriana Vasquez Ayala, Jiaqi Zhao, Hiutung Chu, Mirte Kuijpers, Sara Jackrel, Fidele Tugizimana, Lerato Nephali, Ian Dubery, Ntakadzeni Madala, Eduarda Moreira, Leticia Costa-Lotufo, Norberto Lopes, Paula Rezende-Teixeira, Paula Jimenez, Bipin Rimal, Andrew Patterson, Matthew Traxler, Rita de Cassia Pessotti, Daniel Alvarado-Villalobos, Giselle Tamayo-Castillo, Priscila Chaverri, Efrain Escudero-Leyva, Luis-Manuel Quiros-Guerrero, Alexandre Bory, Juliette Joubert, Adriano Rutz, Jean-Luc Wolfender, Pierre-Marie Allard, Andreas Sichert, Sammy Pontrelli, Benjamin Pullman, Nuno Bandeira, William Gerwick, Katia Gindro, Josep Massana-Codina, Berenike Wagner, Karl Forchhammer, Daniel Petras, Nicole Aiosa, Neha Garg, Manuel Liebeke, Patric Bourceau, Kyo Bin Kang, Henna Gadhavi, Luiz Pedro de Carvalho, Mariana Silva Dos Santos, Alicia Pérez-Lorente, Carlos Molina-Santiago, Diego Romero, Raimo Franke, Mark Broenstrup, Arturo Vera Ponce De Leon, Phillip Pope, Sabina La Rosa, Giorgia La Barbera, Henrik Roager, Martin Laursen, Fabian Hammerle, Bianka Siewert, Ursula Peintner, Cuauhtemoc Licona-Cassani, Lorena Rodriguez-Orduña, Evelyn Rampler, Felina Hildebrand, Gunda Koellensperger, Harald Schoeny, Katharina Hohenwallner, Lisa Panzenboeck, Rachel Gregor, Ellis O'Neill, Eve Roxborough, Jane Odoi, Nicole Bale, Su Ding, Jaap S Sinninghe Damsté, Xueli Guan, Jerry Cui, Kou-San Ju, Denise Silva, Fernanda Silva, Gilvan da Silva, Hector Koolen, Carlismari Grundmann, Jason Clement, Hosein Mohimani, Kirk Broders, Kerry McPhail, Sidnee Ober-Singleton, Christopher Rath, Daniel McDonald, Rob Knight, Mingxun WangResearch Square2023-08-03
Microbial short-chain fatty acids regulate drug seeking and transcriptional control in a model of cocaine seeking.Katherine R Meckel, Sierra S Simpson, Arthur Godino, Emily G Peck, Jonathon P Sens, Michael Z Leonard, Olivier George, Erin S Calipari, Rebecca S Hofford, Drew D KiralyNeuropsychopharmacology : Official Publication Of The American College Of Neuropsychopharmacology2023-08-02
A modular plasmid toolkit applied in marine bacteria reveals functional insights during bacteria-stimulated metamorphosis.Amanda T Alker, Morgan V Farrell, Alpher E Aspiras, Tiffany L Dunbar, Andriy Fedoriouk, Jeffrey E Jones, Sama R Mikhail, Gabriella Y Salcedo, Bradley S Moore, Nicholas J ShikumaMBio2023-08-02
Common antibiotics, azithromycin and amoxicillin, affect gut metagenomics within a household.Jessica Chopyk, Ana Georgina Cobián Güemes, Claudia Ramirez-Sanchez, Hedieh Attai, Melissa Ly, Marcus B Jones, Roland Liu, Chenyu Liu, Kun Yang, Xin M Tu, Shira R Abeles, Karen Nelson, David T PrideBMC Microbiology2023-08-02
Gut-microbiome centered therapies for alcohol-associated liver disease.Tannaz Ranjbarian, Bernd SchnablSeminars In Liver Disease2023-08-01
G protein-coupled receptors: A target for microbial metabolites and a mechanistic link to microbiome-immune-brain interactions.Gajender Aleti, Emily A Troyer, Suzi HongBrain, Behavior, & Immunity - Health2023-07-31
Compounding Phages for Therapeutic Applications.Ana Georgina Cobián Güemes, Tram Le, Maria Isabel Rojas, Nicole E Jacobson, Helena Villela, Katelyn McNair, Shr-Hau Hung, Lili Han, Lance Boling, Jessica Claire Octavio, Lorena Dominguez, Vito Adrian Cantú, Sinéad Archdeacon, Alejandro A Vega, Michelle A An, Hamza Hajama, Gregory Burkeen, Robert A Edwards, Douglas J Conrad, Forest Rohwer, Anca M SegallViruses2023-07-30
Roles for the RNA-Binding Protein Rbp2 in Regulating the Circadian Clock.Briana M McKnight, Shannon Kang, Tam H Le, Mingxu Fang, Genelyn Carbonel, Esbeydi Rodriguez, Sutharsan Govindarajan, Nitsan Albocher-Kedem, Amanda L Tran, Nicholas R Duncan, Orna Amster-Choder, Susan S Golden, Susan E CohenJournal Of Biological Rhythms2023-07-28
Adaptive evolution of a minimal organism with a synthetic genome.Troy E Sandberg, Kim S Wise, Christopher Dalldorf, Richard Szubin, Adam M Feist, John I Glass, Bernhard O PalssonIScience2023-07-28
Greengenes2 unifies microbial data in a single reference tree.Daniel McDonald, Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio Gonzalez, James T Morton, Giorgia Nicolaou, Donovan H Parks, Søren M Karst, Mads Albertsen, Philip Hugenholtz, Todd DeSantis, Se Jin Song, Andrew Bartko, Aki S Havulinna, Pekka Jousilahti, Susan Cheng, Michael Inouye, Teemu Niiranen, Mohit Jain, Veikko Salomaa, Leo Lahti, Siavash Mirarab, Rob KnightNature Biotechnology2023-07-27
Generation of accurate, expandable phylogenomic trees with uDance.Metin Balaban, Yueyu Jiang, Qiyun Zhu, Daniel McDonald, Rob Knight, Siavash MirarabNature Biotechnology2023-07-27
miR-15/16 clusters restrict effector Treg cell differentiation and function.Jiayi Dong, William J Huth, Nimi Marcel, Ziyue Zhang, Ling-Li Lin, Li-Fan LuThe Journal Of Experimental Medicine2023-07-27
Murine Models of Salmonella Infection.Gregory T Walker, Romana R Gerner, Sean-Paul Nuccio, Manuela RaffatelluCurrent Protocols2023-07-24
Cationic-nanogel nasal vaccine containing the ectodomain of RSV-small hydrophobic protein induces protective immunity in rodents.Shingo Umemoto, Rika Nakahashi-Ouchida, Yoshikazu Yuki, Shiho Kurokawa, Tomonori Machita, Yohei Uchida, Hiromi Mori, Tomoyuki Yamanoue, Takehiko Shibata, Shin-Ichi Sawada, Kazuya Ishige, Takashi Hirano, Kohtaro Fujihashi, Kazunari Akiyoshi, Yosuke Kurashima, Daisuke Tokuhara, Peter B Ernst, Masashi Suzuki, Hiroshi KiyonoNPJ Vaccines2023-07-24
Fecal virome transplantation is sufficient to alter fecal microbiota and drive lean and obese body phenotypes in mice.Joshua M Borin, Roland Liu, Yanhan Wang, Tsung-Chin Wu, Jessica Chopyk, Lina Huang, Peiting Kuo, Chandrabali Ghose, Justin R Meyer, Xin M Tu, Bernd Schnabl, David T PrideGut Microbes2023-07-21
Managing HIV During the COVID-19 Pandemic: A Study of Help-Seeking Behaviors on a Social Media Forum.John W Ayers, Zechariah Zhu, Keith Harrigian, Gwenyth P Wightman, Mark Dredze, Steffanie A Strathdee, Davey M SmithAIDS And Behavior2023-07-21
A comprehensive Drosophila resource to identify key functional interactions between SARS-CoV-2 factors and host proteins.Annabel Guichard, Shenzhao Lu, Oguz Kanca, Daniel Bressan, Yan Huang, Mengqi Ma, Sara Sanz Juste, Jonathan C Andrews, Kristy L Jay, Marketta Sneider, Ruth Schwartz, Mei-Chu Huang, Danqing Bei, Hongling Pan, Liwen Ma, Wen-Wen Lin, Ankush Auradkar, Pranjali Bhagwat, Soo Park, Kenneth H Wan, Takashi Ohsako, Toshiyuki Takano-Shimizu, Susan E Celniker, Michael F Wangler, Shinya Yamamoto, Hugo J Bellen, Ethan BierCell Reports2023-07-20
Genetic and Functional Analyses of Cutibacterium Acnes Isolates Reveal the Association of a Linear Plasmid with Skin Inflammation.Alan M O'Neill, Kellen J Cavagnero, Jason S Seidman, Livia Zaramela, Yang Chen, Fengwu Li, Teruaki Nakatsuji, Joyce Y Cheng, Yun L Tong, Tran H Do, Samantha L Brinton, Tissa R Hata, Robert L Modlin, Richard L GalloThe Journal Of Investigative Dermatology2023-07-20
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).Sanjay Jain, Liming Pei, Jeffrey M Spraggins, Michael Angelo, James P Carson, Nils Gehlenborg, Fiona Ginty, Joana P Gonçalves, James S Hagood, John W Hickey, Neil L Kelleher, Louise C Laurent, Shin Lin, Yiing Lin, Huiping Liu, Alexandra Naba, Ernesto S Nakayasu, Wei-Jun Qian, Andrea Radtke, Paul Robson, Brent R Stockwell, Raf Van de Plas, Ioannis S Vlachos, Mowei Zhou, , Katy Börner, Michael P SnyderNature Cell Biology2023-07-19
An atlas of healthy and injured cell states and niches in the human kidney.Blue B Lake, Rajasree Menon, Seth Winfree, Qiwen Hu, Ricardo Melo Ferreira, Kian Kalhor, Daria Barwinska, Edgar A Otto, Michael Ferkowicz, Dinh Diep, Nongluk Plongthongkum, Amanda Knoten, Sarah Urata, Laura H Mariani, Abhijit S Naik, Sean Eddy, Bo Zhang, Yan Wu, Diane Salamon, James C Williams, Xin Wang, Karol S Balderrama, Paul J Hoover, Evan Murray, Jamie L Marshall, Teia Noel, Anitha Vijayan, Austin Hartman, Fei Chen, Sushrut S Waikar, Sylvia E Rosas, Francis P Wilson, Paul M Palevsky, Krzysztof Kiryluk, John R Sedor, Robert D Toto, Chirag R Parikh, Eric H Kim, Rahul Satija, Anna Greka, Evan Z Macosko, Peter V Kharchenko, Joseph P Gaut, Jeffrey B Hodgin, , Michael T Eadon, Pierre C Dagher, Tarek M El-Achkar, Kun Zhang, Matthias Kretzler, Sanjay JainNature2023-07-19
Congenital CMV associated with diaphragm dysfunction: a rare cause of tachypnoea.Rebecca Carter, Maayan Yakir, Julie Ryu, Katherine WeissBMJ Case Reports2023-07-19
Multiple pals gene modules control a balance between immunity and development in Caenorhabditis elegans.Vladimir Lažetić, Michael J Blanchard, Theresa Bui, Emily R TroemelPLoS Pathogens2023-07-18
Immunization with lytic polysaccharide monooxygenase CbpD induces protective immunity against pneumonia.Fatemeh Askarian, Chih-Ming Tsai, Gabriele Cordara, Raymond H Zurich, Elisabet Bjånes, Ole Golten, Henrik Vinther Sørensen, Armin Kousha, Angela Meier, Elvis Chikwati, Jack-Ansgar Bruun, Judith Anita Ludviksen, Biswa Choudhury, Desmond Trieu, Stanley Davis, Per Kristian Thorén Edvardsen, Tom Eirik Mollnes, George Y Liu, Ute Krengel, Douglas J Conrad, Gustav Vaaje-Kolstad, Victor NizetProceedings Of The National Academy Of Sciences Of The United States Of America2023-07-17
Mpox vaccine and infection-driven human immune signatures: an immunological analysis of an observational study.Hallie Cohn, Nathaniel Bloom, Gianna Y Cai, Jordan J Clark, Alison Tarke, Maria C Bermúdez-González, Deena R Altman, Luz Amarilis Lugo, Francisco Pereira Lobo, Susanna Marquez, , Jin-Qiu Chen, Wenlin Ren, Lili Qin, Jennifer L Yates, Danielle T Hunt, William T Lee, Shane Crotty, Florian Krammer, Alba Grifoni, Alessandro Sette, Viviana Simon, Camila H CoelhoThe Lancet. Infectious Diseases2023-07-17
Longitudinal flux balance analyses of a patient with episodic colonic inflammation reveals microbiome metabolic dynamics.Arianna Basile, Almut Heinken, Johannes Hertel, Larry Smarr, Weizhong Li, Laura Treu, Giorgio Valle, Stefano Campanaro, Ines ThieleGut Microbes2023-07-14
Structural and photophysical characterization of the small ultra-red fluorescent protein.Atanu Maiti, Cosmo Z Buffalo, Saumya Saurabh, Felipe Montecinos-Franjola, Justin S Hachey, William J Conlon, Geraldine N Tran, Bakar Hassan, Kylie J Walters, Mikhail Drobizhev, W E Moerner, Partho Ghosh, Hiroshi Matsuo, Roger Y Tsien, John Y Lin, Erik A RodriguezNature Communications2023-07-12
Structure-based discovery of thiosemicarbazones as SARS-CoV-2 main protease inhibitors.Vinícius Gonçalves Maltarollo, Elany Barbosa da Silva, Thales Kronenberger, Marina Mol Sena Andrade, Gabriel V de Lima Marques, Nereu J Cândido Oliveira, Lucianna H Santos, Celso de Oliveira Rezende Júnior, Ana C Cassiano Martinho, Danielle Skinner, Pavla Fajtová, Thaís H M Fernandes, Eduardo da Silveira Dos Santos, Poliana A Rodrigues Gazolla, Ana P Martins de Souza, Milene Lopes da Silva, Fabíola S Dos Santos, Stefânia N Lavorato, Ana C Oliveira Bretas, Diogo Teixeira Carvalho, Lucas Lopardi Franco, Stephanie Luedtke, Miriam A Giardini, Antti Poso, Luiz C Dias, Larissa M Podust, Ricardo J Alves, James McKerrow, Saulo F Andrade, Róbson R Teixeira, Jair L Siqueira-Neto, Anthony O'Donoghue, Renata B de Oliveira, Rafaela S FerreiraFuture Medicinal Chemistry2023-07-12
Nanoscaled Discovery of a Shunt Rifamycin from Using a Three-Color GFP-Tagged Macrophage Infection Assay.Nhan T Pham, Joana Alves, Fiona A Sargison, Reiko Cullum, Jan Wildenhain, William Fenical, Mark S Butler, David A Mead, Brendan M Duggan, J Ross Fitzgerald, James J La Clair, Manfred AuerACS Infectious Diseases2023-07-11
9,10-KODA, an α-ketol produced by the tonoplast-localized 9-lipoxygenase ZmLOX5, plays a signaling role in maize defense against insect herbivory.Peiguo Yuan, Eli Borrego, Yong-Soon Park, Zachary Gorman, Pei-Cheng Huang, Jordan Tolley, Shawn A Christensen, Jantana Blanford, Aruna Kilaru, Robert Meeley, Hisashi Koiwa, Stefan Vidal, Alisa Huffaker, Eric Schmelz, Michael V KolomietsMolecular Plant2023-07-11
Association of polygenic score and the involvement of cholinergic and glutamatergic pathways with lithium treatment response in patients with bipolar disorder.Azmeraw T Amare, Anbupalam Thalamuthu, Klaus Oliver Schubert, Janice M Fullerton, Muktar Ahmed, Simon Hartmann, Sergi Papiol, Urs Heilbronner, Franziska Degenhardt, Fasil Tekola-Ayele, Liping Hou, Yi-Hsiang Hsu, Tatyana Shekhtman, Mazda Adli, Nirmala Akula, Kazufumi Akiyama, Raffaella Ardau, Bárbara Arias, Jean-Michel Aubry, Roland Hasler, Hélène Richard-Lepouriel, Nader Perroud, Lena Backlund, Abesh Kumar Bhattacharjee, Frank Bellivier, Antonio Benabarre, Susanne Bengesser, Joanna M Biernacka, Armin Birner, Cynthia Marie-Claire, Pablo Cervantes, Hsi-Chung Chen, Caterina Chillotti, Sven Cichon, Cristiana Cruceanu, Piotr M Czerski, Nina Dalkner, Maria Del Zompo, J Raymond DePaulo, Bruno Étain, Stephane Jamain, Peter Falkai, Andreas J Forstner, Louise Frisen, Mark A Frye, Sébastien Gard, Julie S Garnham, Fernando S Goes, Maria Grigoroiu-Serbanescu, Andreas J Fallgatter, Sophia Stegmaier, Thomas Ethofer, Silvia Biere, Kristiyana Petrova, Ceylan Schuster, Kristina Adorjan, Monika Budde, Maria Heilbronner, Janos L Kalman, Mojtaba Oraki Kohshour, Daniela Reich-Erkelenz, Sabrina K Schaupp, Eva C Schulte, Fanny Senner, Thomas Vogl, Ion-George Anghelescu, Volker Arolt, Udo Dannlowski, Detlef Dietrich, Christian Figge, Markus Jäger, Fabian U Lang, Georg Juckel, Carsten Konrad, Jens Reimer, Max Schmauß, Andrea Schmitt, Carsten Spitzer, Martin von Hagen, Jens Wiltfang, Jörg Zimmermann, Till F M Andlauer, Andre Fischer, Felix Bermpohl, Philipp Ritter, Silke Matura, Anna Gryaznova, Irina Falkenberg, Cüneyt Yildiz, Tilo Kircher, Julia Schmidt, Marius Koch, Kathrin Gade, Sarah Trost, Ida S Haussleiter, Martin Lambert, Anja C Rohenkohl, Vivien Kraft, Paul Grof, Ryota Hashimoto, Joanna Hauser, Stefan Herms, Per Hoffmann, Esther Jiménez, Jean-Pierre Kahn, Layla Kassem, Po-Hsiu Kuo, Tadafumi Kato, John Kelsoe, Sarah Kittel-Schneider, Ewa Ferensztajn-Rochowiak, Barbara König, Ichiro Kusumi, Gonzalo Laje, Mikael Landén, Catharina Lavebratt, Marion Leboyer, Susan G Leckband, Alfonso Tortorella, Mirko Manchia, Lina Martinsson, Michael J McCarthy, Susan McElroy, Francesc Colom, Vincent Millischer, Marina Mitjans, Francis M Mondimore, Palmiero Monteleone, Caroline M Nievergelt, Markus M Nöthen, Tomas Novák, Claire O'Donovan, Norio Ozaki, Andrea Pfennig, Claudia Pisanu, James B Potash, Andreas Reif, Eva Reininghaus, Guy A Rouleau, Janusz K Rybakowski, Martin Schalling, Peter R Schofield, Barbara W Schweizer, Giovanni Severino, Paul D Shilling, Katzutaka Shimoda, Christian Simhandl, Claire M Slaney, Alessio Squassina, Thomas Stamm, Pavla Stopkova, Mario Maj, Gustavo Turecki, Eduard Vieta, Julia Veeh, Stephanie H Witt, Adam Wright, Peter P Zandi, Philip B Mitchell, Michael Bauer, Martin Alda, Marcella Rietschel, Francis J McMahon, Thomas G Schulze, Scott R Clark, Bernhard T BauneMolecular Psychiatry2023-07-11
Pangenome analysis reveals the genetic basis for taxonomic classification of the Lactobacillaceae family.Akanksha Rajput, Siddharth M Chauhan, Omkar S Mohite, Jason C Hyun, Omid Ardalani, Leonie J Jahn, Morten Oa Sommer, Bernhard O PalssonFood Microbiology2023-07-08
Protocols for in vitro reconstitution of the cyanobacterial circadian clock.Archana Chavan, Joel Heisler, Yong-Gang Chang, Susan S Golden, Carrie L Partch, Andy LiWangBiopolymers2023-07-08
Bacterial cytological profiling reveals interactions between jumbo phage φKZ infection and cell wall active antibiotics in Pseudomonas aeruginosa.Hannah Tsunemoto, Joseph Sugie, Eray Enustun, Kit Pogliano, Joe PoglianoPloS One2023-07-07
Antigen pressure from two founder viruses induces multiple insertions at a single antibody position to generate broadly neutralizing HIV antibodies.Collin Joyce, Sasha Murrell, Ben Murrell, Oluwarotimi Omorodion, Lorena S Ver, Nancy Carrico, Raiza Bastidas, Rebecca Nedellec, Michael Bick, Jordan Woehl, Fangzhu Zhao, Alison Burns, Shawn Barman, Michael Appel, Alejandra Ramos, Lalinda Wickramasinghe, Kemal Eren, Thomas Vollbrecht, Davey M Smith, Sergei L Kosakovsky Pond, Ryan McBride, Charli Worth, Facundo Batista, Devin Sok, , Pascal Poignard, Bryan Briney, Ian A Wilson, Elise Landais, Dennis R BurtonPLoS Pathogens2023-06-29
A conserved three-dimensional pattern in a Streptococcus pyogenes M protein immunogen elicits M type cross-reactivity.Kuei-Chen Wang, Eziz Kuliyev, Victor Nizet, Partho GhoshThe Journal Of Biological Chemistry2023-06-28
Focusing antibody responses to the fusion peptide in rhesus macaques.Christopher A Cottrell, Payal P Pratap, Kimberly M Cirelli, Diane G Carnathan, Chiamaka A Enemuo, Aleksandar Antanasijevic, Gabriel Ozorowski, Leigh M Sewall, Hongmei Gao, Kelli M Greene, Joel D Allen, Julia T Ngo, Yury Choe, Bartek Nogal, Murillo Silva, Jinal Bhiman, Matthias Pauthner, Darrell J Irvine, David Montefiori, Max Crispin, Dennis R Burton, Guido Silvestri, Shane Crotty, Andrew B WardBioRxiv : The Preprint Server For Biology2023-06-27
Human milk immune factors, maternal nutritional status, and infant sex: The INSPIRE study.Beatrice Caffé, Aaron Blackwell, Bethaney D Fehrenkamp, Janet E Williams, Ryan M Pace, Kimberly A Lackey, Lorena Ruiz, Juan M Rodríguez, Mark A McGuire, James A Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, Linda J Kvist, Gloria E Otoo, Rossina G Pareja, Lars Bode, Dubale Gebeyehu, Debela K Gindola, Sarah Boothman, Katherine Flores, Michelle K McGuire, Courtney L MeehanAmerican Journal Of Human Biology : The Official Journal Of The Human Biology Council2023-06-26
Multi-level analysis of the gut-brain axis shows autism spectrum disorder-associated molecular and microbial profiles.James T Morton, Dong-Min Jin, Robert H Mills, Yan Shao, Gibraan Rahman, Daniel McDonald, Qiyun Zhu, Metin Balaban, Yueyu Jiang, Kalen Cantrell, Antonio Gonzalez, Julie Carmel, Linoy Mia Frankiensztajn, Sandra Martin-Brevet, Kirsten Berding, Brittany D Needham, María Fernanda Zurita, Maude David, Olga V Averina, Alexey S Kovtun, Antonio Noto, Michele Mussap, Mingbang Wang, Daniel N Frank, Ellen Li, Wenhao Zhou, Vassilios Fanos, Valery N Danilenko, Dennis P Wall, Paúl Cárdenas, Manuel E Baldeón, Sébastien Jacquemont, Omry Koren, Evan Elliott, Ramnik J Xavier, Sarkis K Mazmanian, Rob Knight, Jack A Gilbert, Sharon M Donovan, Trevor D Lawley, Bob Carpenter, Richard Bonneau, Gaspar Taroncher-OldenburgNature Neuroscience2023-06-26
Dietary weight loss-induced improvements in metabolic function are enhanced by exercise in people with obesity and prediabetes.Joseph W Beals, Brandon D Kayser, Gordon I Smith, George G Schweitzer, Kyleigh Kirbach, Monica L Kearney, Jun Yoshino, Gibraan Rahman, Rob Knight, Bruce W Patterson, Samuel KleinNature Metabolism2023-06-26
Large library docking for novel SARS-CoV-2 main protease non-covalent and covalent inhibitors.Elissa A Fink, Conner Bardine, Stefan Gahbauer, Isha Singh, Tyler Detomasi, Kris White, Shuo Gu, Xiaobo Wan, Jun Chen, Beatrice Ary, Isabella Glenn, Joseph O'Connell, Henry O'Donnell, Pavla Fajtová, Jiankun Lyu, Seth Vigneron, Nicholas J Young, Ivan S Kondratov, Arghavan Alisoltani, Lacy M Simons, Ramon Lorenzo-Redondo, Egon A Ozer, Judd F Hultquist, Anthony J O'Donoghue, Yurii Moroz, Jack Taunton, Adam R Renslo, John J Irwin, Adolfo García-Sastre, Brian K Shoichet, Charles S CraikProtein Science : A Publication Of The Protein Society2023-06-24
Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution.Caitriona Brennan, Rodolfo A Salido, Pedro Belda-Ferre, MacKenzie Bryant, Charles Cowart, Maria D Tiu, Antonio González, Daniel McDonald, Caitlin Tribelhorn, Amir Zarrinpar, Rob KnightMSystems2023-06-23
Chemoproteomic identification of a DPP4 homolog in Bacteroides thetaiotaomicron.Laura J Keller, Taylor H Nguyen, Lawrence J Liu, Brianna M Hurysz, Markus Lakemeyer, Matteo Guerra, Danielle J Gelsinger, Rachael Chanin, Nhi Ngo, Kenneth M Lum, Franco Faucher, Phillip Ipock, Micah J Niphakis, Ami S Bhatt, Anthony J O'Donoghue, Kerwyn Casey Huang, Matthew BogyoNature Chemical Biology2023-06-22
Metagenomics reveals novel microbial signatures of farm exposures in house dust.Ziyue Wang, Kathryn R Dalton, Mikyeong Lee, Christine G Parks, Laura E Beane Freeman, Qiyun Zhu, Antonio González, Rob Knight, Shanshan Zhao, Alison A Motsinger-Reif, Stephanie J LondonFrontiers In Microbiology2023-06-21
Associations of Circulating Estrogens and Estrogen Metabolites with Fecal and Oral Microbiome in Postmenopausal Women in the Ghana Breast Health Study.Zeni Wu, Ruth M Pfeiffer, Doratha A Byrd, Yunhu Wan, Daniel Ansong, Joe-Nat Clegg-Lamptey, Beatrice Wiafe-Addai, Lawrence Edusei, Ernest Adjei, Nicholas Titiloye, Florence Dedey, Francis Aitpillah, Joseph Oppong, Verna Vanderpuye, Ernest Osei-Bonsu, Casey L Dagnall, Kristine Jones, Amy Hutchinson, Belynda D Hicks, Thomas U Ahearn, Rob Knight, Richard Biritwum, Joel Yarney, Seth Wiafe, Baffour Awuah, Kofi Nyarko, Montserrat Garcia-Closas, Rashmi Sinha, Jonine D Figueroa, Louise A Brinton, Britton Trabert, Emily VogtmannMicrobiology Spectrum2023-06-21
Global branches and local states of the human gut microbiome define associations with environmental and intrinsic factors.Julien Tap, Franck Lejzerowicz, Aurélie Cotillard, Matthieu Pichaud, Daniel McDonald, Se Jin Song, Rob Knight, Patrick Veiga, Muriel DerrienNature Communications2023-06-20
Expanding the Utility of Bioinformatic Data for the Full Stereostructural Assignments of Marinolides A and B, 24- and 26-Membered Macrolactones Produced by a Chemically Exceptional Marine-Derived Bacterium.Min Cheol Kim, Jaclyn M Winter, Reiko Cullum, Alexander J Smith, William FenicalMarine Drugs2023-06-20
Activation mechanism and activity of globupain, a thermostable C11 protease from the Arctic Mid-Ocean Ridge hydrothermal system.Victoria Røyseth, Brianna M Hurysz, Anna-Karina Kaczorowska, Sebastian Dorawa, Anita-Elin Fedøy, Hasan Arsın, Mateus Sá M Serafim, Samuel A Myers, Olesia Werbowy, Tadeusz Kaczorowski, Runar Stokke, Anthony J O'Donoghue, Ida Helene SteenFrontiers In Microbiology2023-06-19
Bacteriophage Therapy of Multidrug-resistant Achromobacter in an 11-Year-old Boy With Cystic Fibrosis Assessed by Metagenome Analysis.John S Bradley, Hamza Hajama, Kathryn Akong, Mary Jordan, Dayna Stout, Ryan S Rowe, Douglas J Conrad, Sara Hingtgen, Anca M SegallThe Pediatric Infectious Disease Journal2023-06-19
A pharmacoproteomic landscape of organotypic intervention responses in Gram-negative sepsis.Tirthankar Mohanty, Christofer A Q Karlsson, Yashuan Chao, Erik Malmström, Eleni Bratanis, Andrietta Grentzmann, Martina Mørch, Victor Nizet, Lars Malmström, Adam Linder, Oonagh Shannon, Johan MalmströmNature Communications2023-06-17
ants promote fungus garden hygiene using -derived metabolite cues.Kathleen E Kyle, Sara P Puckett, Andrés Mauricio Caraballo-Rodríguez, José Rivera-Chávez, Robert M Samples, Cody E Earp, Huzefa A Raja, Cedric J Pearce, Madeleine Ernst, Justin J J van der Hooft, Madison E Adams, Nicholas H Oberlies, Pieter C Dorrestein, Jonathan L Klassen, Marcy J BalunasProceedings Of The National Academy Of Sciences Of The United States Of America2023-06-15
Host and Water Microbiota Are Differentially Linked to Potential Human Pathogen Accumulation in Oysters.Rachel E Diner, Amy Zimmer-Faust, Emily Cooksey, Sarah Allard, Sho M Kodera, Emily Kunselman, Yash Garodia, Marc P Verhougstraete, Andrew E Allen, John Griffith, Jack A GilbertApplied And Environmental Microbiology2023-06-15
The gut-liver axis and gut microbiota in health and liver disease.Cynthia L Hsu, Bernd SchnablNature Reviews. Microbiology2023-06-14
Elucidating the CodY regulon in USA300 substrains TCH1516 and LAC.Ye Gao, Saugat Poudel, Yara Seif, Zeyang Shen, Bernhard O PalssonMSystems2023-06-13
Immune resilience despite inflammatory stress promotes longevity and favorable health outcomes including resistance to infection.Sunil K Ahuja, Muthu Saravanan Manoharan, Grace C Lee, Lyle R McKinnon, Justin A Meunier, Maristella Steri, Nathan Harper, Edoardo Fiorillo, Alisha M Smith, Marcos I Restrepo, Anne P Branum, Matthew J Bottomley, Valeria Orrù, Fabio Jimenez, Andrew Carrillo, Lavanya Pandranki, Caitlyn A Winter, Lauryn A Winter, Alvaro A Gaitan, Alvaro G Moreira, Elizabeth A Walter, Guido Silvestri, Christopher L King, Yong-Tang Zheng, Hong-Yi Zheng, Joshua Kimani, T Blake Ball, Francis A Plummer, Keith R Fowke, Paul N Harden, Kathryn J Wood, Martin T Ferris, Jennifer M Lund, Mark T Heise, Nigel Garrett, Kristen R Canady, Salim S Abdool Karim, Susan J Little, Sara Gianella, Davey M Smith, Scott Letendre, Douglas D Richman, Francesco Cucca, Hanh Trinh, Sandra Sanchez-Reilly, Joan M Hecht, Jose A Cadena Zuluaga, Antonio Anzueto, Jacqueline A Pugh, , Brian K Agan, Robert Root-Bernstein, Robert A Clark, Jason F Okulicz, Weijing HeNature Communications2023-06-13
Determination of Effect Sizes for Power Analysis for Microbiome Studies Using Large Microbiome Databases.Gibraan Rahman, Daniel McDonald, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Lingjing Jiang, Climent Casals-Pascual, Daniel Hakim, Amanda Hazel Dilmore, Brent Nowinski, Shyamal Peddada, Rob KnightGenes2023-06-09
Elucidation of independently modulated genes in reveals carbon sources that control its expression of hemolytic toxins.Yujiro Hirose, Saugat Poudel, Anand V Sastry, Kevin Rychel, Cameron R Lamoureux, Richard Szubin, Daniel C Zielinski, Hyun Gyu Lim, Nitasha D Menon, Helena Bergsten, Satoshi Uchiyama, Tomoki Hanada, Shigetada Kawabata, Bernhard O Palsson, Victor NizetMSystems2023-06-06
Systems biology of competency in Vibrio natriegens is revealed by applying novel data analytics to the transcriptome.Jongoh Shin, Kevin Rychel, Bernhard O PalssonCell Reports2023-06-06
Perceived risks and benefits of enrolling people with HIV at the end of life in cure research in Southern California, United States.Karine Dubé, Brittany Shelton, Hursch Patel, Samuel O Ndukwe, Susanna Concha-Garcia, Cheryl Dullano, Stephanie Solso, Steven Hendrickx, Andy Kaytes, Jeff Taylor, Thomas J Villa, Susan J Little, Patricia K Riggs, David Lessard, Anish K Arora, Cecilia T Costiniuk, Shadi Eskaf, Davey M Smith, Sara GianellaJournal Of Virus Eradication2023-06-05
Metabolomics of bacterial-fungal pairwise interactions reveal conserved molecular mechanisms.Gordon T Luu, Jessica C Little, Emily C Pierce, Manon Morin, Celine A Ertekin, Benjamin E Wolfe, Oliver Baars, Rachel J Dutton, Laura M SanchezThe Analyst2023-06-01
TEMPORARILY REMOVED: Diagnosis of multisystem inflammatory syndrome in children by a whole-blood transcriptional signature.Heather R Jackson, Luca Miglietta, Dominic Habgood-Coote, Giselle D'Souza, Priyen Shah, Samuel Nichols, Ortensia Vito, Oliver Powell, Maisey Salina Davidson, Chisato Shimizu, Philipp K A Agyeman, Coco R Beudeker, Karen Brengel-Pesce, Enitan D Carrol, Michael J Carter, Tisham De, Irini Eleftheriou, Marieke Emonts, Cristina Epalza, Pantelis Georgiou, Ronald De Groot, Katy Fidler, Colin Fink, Daniëlle van Keulen, Taco Kuijpers, Henriette Moll, Irene Papatheodorou, Stephane Paulus, Marko Pokorn, Andrew J Pollard, Irene Rivero-Calle, Pablo Rojo, Fatou Secka, Luregn J Schlapbach, Adriana H Tremoulet, Maria Tsolia, Effua Usuf, Michiel Van Der Flier, Ulrich Von Both, Clementien Vermont, Shunmay Yeung, Dace Zavadska, Werner Zenz, Lachlan J M Coin, Aubrey Cunnington, Jane C Burns, Victoria Wright, Federico Martinon-Torres, Jethro A Herberg, Jesus Rodriguez Manzano, Myrsini Kaforou, Michael Levin, Journal Of The Pediatric Infectious Diseases Society2023-05-31
Gut microbiota, circulating inflammatory markers and metabolites, and carotid artery atherosclerosis in HIV infection.Zheng Wang, Brandilyn A Peters, MacKenzie Bryant, David B Hanna, Tara Schwartz, Tao Wang, Christopher C Sollecito, Mykhaylo Usyk, Evan Grassi, Fanua Wiek, Lauren St Peter, Wendy S Post, Alan L Landay, Howard N Hodis, Kathleen M Weber, Audrey French, Elizabeth T Golub, Jason Lazar, Deborah Gustafson, Anjali Sharma, Kathryn Anastos, Clary B Clish, Robert D Burk, Robert C Kaplan, Rob Knight, Qibin QiMicrobiome2023-05-27
Responsiveness to Vedolizumab Therapy in Ulcerative Colitis is Associated With Alterations in Immune Cell-Cell Communications.Paul Hsu, Eunice J Choi, Shefali A Patel, William H Wong, Jocelyn G Olvera, Priscilla Yao, Yi Chia Liu, Matthew S Tsai, Wei Wang, Brigid S Boland, John T ChangInflammatory Bowel Diseases2023-05-26
M-PAST score is better than MAST score for the diagnosis of active fibrotic NASH.Kento Imajo, Yusuke Saigusa, Takashi Kobayashi, Koki Nagai, Shinya Nishida, Nobuyoshi Kawamura, Hiroyoshi Doi, Michihiro Iwaki, Asako Nogami, Yasushi Honda, Takaomi Kessoku, Yuji Ogawa, Hiroyuki Kirikoshi, Satoshi Yasuda, Hidenori Toyoda, Hideki Hayashi, Shigehiro Kokubu, Daisuke Utsunomiya, Hirokazu Takahashi, Shinichi Aishima, Beom Kyung Kim, Nobuharu Tamaki, Satoru Saito, Masato Yoneda, Rohit Loomba, Atsushi NakajimaHepatology Research : The Official Journal Of The Japan Society Of Hepatology2023-05-26
Divergent metabolic programmes control two populations of MAIT cells that protect the lung.Thomas Riffelmacher, Mallory Paynich Murray, Chantal Wientjens, Shilpi Chandra, Viankail Cedillo-Castelán, Ting-Fang Chou, Sara McArdle, Christopher Dillingham, Jordan Devereaux, Aaron Nilsen, Simon Brunel, David M Lewinsohn, Jeff Hasty, Gregory Seumois, Christopher A Benedict, Pandurangan Vijayanand, Mitchell KronenbergNature Cell Biology2023-05-25
You are what you excrete.Caitlin Guccione, Daniel McDonald, Rebecca Fielding-Miller, Kit Curtius, Rob KnightNature Microbiology2023-05-25
A Community-Driven Framework to Prioritize the Use of Donated Human Biological Materials in the Context of HIV Cure-Related Research at the End of Life.Karine Dubé, Thomas J Villa, Jeff Taylor, Andy Kaytes, David J Moore, Susan J Little, Antoine Chaillon, Davey M Smith, Sara GianellaPathogens & Immunity2023-05-24
Microbiological assessment reveals that Salmonella, Shigella and Campylobacter infections are widespread in HIV infected and uninfected patients with diarrhea in Mozambique.Delfina Fernandes Hlashwayo, Emília Virgínia Noormahomed, Leonilde Bahule, Constance Benson, Robert T Schooley, Betuel Sigaúque, Kim E Barrett, Custódio Gabriel BilaPLOS Global Public Health2023-05-22
Depth drives the distribution of microbial ecological functions in the coastal western Antarctic Peninsula.Avishek Dutta, Elizabeth Connors, Rebecca Trinh, Natalia Erazo, Srishti Dasarathy, Hugh W Ducklow, Deborah K Steinberg, Oscar M Schofield, Jeff S BowmanFrontiers In Microbiology2023-05-18
Acute alcohol-associated hepatitis: Latest findings in non-invasive biomarkers and treatment.Tomoo Yamazaki, Bernd SchnablLiver International : Official Journal Of The International Association For The Study Of The Liver2023-05-15
Transcriptional programming of CD4 T differentiation in viral infection balances effector- and memory-associated gene expression.Quynh P Nguyen, Kennidy K Takehara, Tianda Z Deng, Shannon O'Shea, Maximilian Heeg, Kyla D Omilusik, J Justin Milner, Sara Quon, Matthew E Pipkin, Jinyong Choi, Shane Crotty, Ananda W GoldrathScience Immunology2023-05-12
Tryptophan metabolism, gut microbiota, and carotid artery plaque in women with and without HIV infection.Kai Luo, Zheng Wang, Brandilyn A Peters, David B Hanna, Tao Wang, Christopher C Sollecito, Evan Grassi, Fanua Wiek, Lauren St Peter, Mykhaylo Usyk, Wendy S Post, Alan L Landay, Howard N Hodis, Kathleen M Weber, Audrey French, Elizabeth T Golub, Jason Lazar, Deborah Gustafson, Anjali Sharma, Kathryn Anastos, Clary B Clish, Rob Knight, Robert C Kaplan, Robert D Burk, Qibin QiAIDS (London, England)2023-05-12
Competition between skin antimicrobial peptides and commensal bacteria in type 2 inflammation enables survival of S. aureus.Teruaki Nakatsuji, Samantha L Brinton, Kellen J Cavagnero, Alan M O'Neill, Yang Chen, Tatsuya Dokoshi, Anna M Butcher, Olive C Osuoji, Faiza Shafiq, Josh L Espinoza, Christopher L Dupont, Tissa R Hata, Richard L GalloCell Reports2023-05-10
Universal gut microbial relationships in the gut microbiome of wild baboons.Kimberly E Roche, Johannes R Bjork, Mauna R Dasari, Laura Grieneisen, David A W A M Jansen, Trevor J Gould, Laurence R Gesquiere, Luis B Barreiro, Susan C Alberts, Ran Blekhman, Jack A Gilbert, Jenny Tung, Sayan Mukherjee, Elizabeth A ArchieELife2023-05-09
Fecal cytolysin does not predict disease severity in acutely decompensated cirrhosis and acute-on-chronic liver failure.Phillipp Hartmann, Sonja Lang, Robert Schierwagen, Sabine Klein, Michael Praktiknjo, Jonel Trebicka, Bernd SchnablHepatobiliary & Pancreatic Diseases International : HBPD INT2023-05-09
Hepatic stellate cell stearoyl co-A desaturase activates leukotriene B4 receptor 2 - β-catenin cascade to promote liver tumorigenesis.Sonal Sinha, Satoka Aizawa, Yasuhiro Nakano, Alexander Rialdi, Hye Yeon Choi, Rajan Shrestha, Stephanie Q Pan, Yibu Chen, Meng Li, Audrey Kapelanski-Lamoureux, Gregory Yochum, Linda Sher, Satdarshan Paul Monga, Anthoula Lazaris, Keigo Machida, Michael Karin, Ernesto Guccione, Hidekazu TsukamotoNature Communications2023-05-08
E. coli allantoinase is activated by the downstream metabolic enzyme, glycerate kinase, and stabilizes the putative allantoin transporter by direct binding.Irina A Rodionova, Ali Hosseinnia, Sunyoung Kim, Norman Goodacre, Li Zhang, Zhongge Zhang, Bernhard Palsson, Peter Uetz, Mohan Babu, Milton H SaierScientific Reports2023-05-05
Herbivorous Fish Microbiome Adaptations to Sulfated Dietary Polysaccharides.Sheila Podell, Aaron Oliver, Linda Wegley Kelly, Wesley J Sparagon, Alvaro M Plominsky, Robert S Nelson, Lieve M L Laurens, Simona Augyte, Neil A Sims, Craig E Nelson, Eric E AllenApplied And Environmental Microbiology2023-05-03
Evaluation of Autoantibody Binding to Cardiac Tissue in Multisystem Inflammatory Syndrome in Children and COVID-19 Vaccination-Induced Myocarditis.Harsita Patel, Amalia Sintou, Rasheda A Chowdhury, Stephen Rothery, Alma Octavia Iacob, Sanjay Prasad, Peter P Rainer, Federico Martinón-Torres, Vanessa Sancho-Shimizu, Chisato Shimizu, Kirsten Dummer, Adriana H Tremoulet, Jane C Burns, Susanne Sattler, Michael Levin, JAMA Network Open2023-05-01
Mast cell tolerance in the skin microenvironment to commensal bacteria is controlled by fibroblasts.Anna Di Nardo, Yu-Ling Chang, Shahrzad Alimohammadi, Kana Masuda-Kuroki, Zhenping Wang, Krishna Sriram, Paul A InselCell Reports2023-04-28
Identifying the core genome of the nucleus-forming bacteriophage family and characterization of Erwinia phage RAY.Amy Prichard, Jina Lee, Thomas G Laughlin, Amber Lee, Kyle P Thomas, Annika E Sy, Tara Spencer, Aileen Asavavimol, Allison Cafferata, Mia Cameron, Nicholas Chiu, Demyan Davydov, Isha Desai, Gabriel Diaz, Melissa Guereca, Kiley Hearst, Leyi Huang, Emily Jacobs, Annika Johnson, Samuel Kahn, Ryan Koch, Adamari Martinez, Meliné Norquist, Tyler Pau, Gino Prasad, Katrina Saam, Milan Sandhu, Angel Jose Sarabia, Siena Schumaker, Aaron Sonin, Ariya Uyeno, Alison Zhao, Kevin D Corbett, Kit Pogliano, Justin Meyer, Julianne H Grose, Elizabeth Villa, Rachel Dutton, Joe PoglianoCell Reports2023-04-28
Evolutionary constraint and innovation across hundreds of placental mammals.Matthew J Christmas, Irene M Kaplow, Diane P Genereux, Michael X Dong, Graham M Hughes, Xue Li, Patrick F Sullivan, Allyson G Hindle, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Ana M Breit, Mark Diekhans, Cornelia Fanter, Nicole M Foley, Daniel B Goodman, Linda Goodman, Kathleen C Keough, Bogdan Kirilenko, Amanda Kowalczyk, Colleen Lawless, Abigail L Lind, Jennifer R S Meadows, Lucas R Moreira, Ruby W Redlich, Louise Ryan, Ross Swofford, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Ashley R Brown, Joana Damas, Kaili Fan, John Gatesy, Jenna Grimshaw, Jeremy Johnson, Sergey V Kozyrev, Alyssa J Lawler, Voichita D Marinescu, Kathleen M Morrill, Austin Osmanski, Nicole S Paulat, BaDoi N Phan, Steven K Reilly, Daniel E Schäffer, Cynthia Steiner, Megan A Supple, Aryn P Wilder, Morgan E Wirthlin, James R Xue, , Bruce W Birren, Steven Gazal, Robert M Hubley, Klaus-Peter Koepfli, Tomas Marques-Bonet, Wynn K Meyer, Martin Nweeia, Pardis C Sabeti, Beth Shapiro, Arian F A Smit, Mark S Springer, Emma C Teeling, Zhiping Weng, Michael Hiller, Danielle L Levesque, Harris A Lewin, William J Murphy, Arcadi Navarro, Benedict Paten, Katherine S Pollard, David A Ray, Irina Ruf, Oliver A Ryder, Andreas R Pfenning, Kerstin Lindblad-Toh, Elinor K KarlssonScience (New York, N.Y.)2023-04-28
The contribution of historical processes to contemporary extinction risk in placental mammals.Aryn P Wilder, Megan A Supple, Ayshwarya Subramanian, Anish Mudide, Ross Swofford, Aitor Serres-Armero, Cynthia Steiner, Klaus-Peter Koepfli, Diane P Genereux, Elinor K Karlsson, Kerstin Lindblad-Toh, Tomas Marques-Bonet, Violeta Munoz Fuentes, Kathleen Foley, Wynn K Meyer, , Oliver A Ryder, Beth ShapiroScience (New York, N.Y.)2023-04-28
Engineering longevity-design of a synthetic gene oscillator to slow cellular aging.Zhen Zhou, Yuting Liu, Yushen Feng, Stephen Klepin, Lev S Tsimring, Lorraine Pillus, Jeff Hasty, Nan HaoScience (New York, N.Y.)2023-04-27
Gut microbiome and atrial fibrillation-results from a large population-based study.Joonatan Palmu, Christin S Börschel, Alfredo Ortega-Alonso, Lajos Markó, Michael Inouye, Pekka Jousilahti, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Friederike Gutmann, Dominik Linz, Veikko Salomaa, Aki S Havulinna, Sofia K Forslund, Rob Knight, Leo Lahti, Teemu Niiranen, Renate B SchnabelEBioMedicine2023-04-27
Apoptotic cell death in disease-Current understanding of the NCCD 2023.Ilio Vitale, Federico Pietrocola, Emma Guilbaud, Stuart A Aaronson, John M Abrams, Dieter Adam, Massimiliano Agostini, Patrizia Agostinis, Emad S Alnemri, Lucia Altucci, Ivano Amelio, David W Andrews, Rami I Aqeilan, Eli Arama, Eric H Baehrecke, Siddharth Balachandran, Daniele Bano, Nickolai A Barlev, Jiri Bartek, Nicolas G Bazan, Christoph Becker, Francesca Bernassola, Mathieu J M Bertrand, Marco E Bianchi, Mikhail V Blagosklonny, J Magarian Blander, Giovanni Blandino, Klas Blomgren, Christoph Borner, Carl D Bortner, Pierluigi Bove, Patricia Boya, Catherine Brenner, Petr Broz, Thomas Brunner, Rune Busk Damgaard, George A Calin, Michelangelo Campanella, Eleonora Candi, Michele Carbone, Didac Carmona-Gutierrez, Francesco Cecconi, Francis K-M Chan, Guo-Qiang Chen, Quan Chen, Youhai H Chen, Emily H Cheng, Jerry E Chipuk, John A Cidlowski, Aaron Ciechanover, Gennaro Ciliberto, Marcus Conrad, Juan R Cubillos-Ruiz, Peter E Czabotar, Vincenzo D'Angiolella, Mads Daugaard, Ted M Dawson, Valina L Dawson, Ruggero De Maria, Bart De Strooper, Klaus-Michael Debatin, Ralph J Deberardinis, Alexei Degterev, Giannino Del Sal, Mohanish Deshmukh, Francesco Di Virgilio, Marc Diederich, Scott J Dixon, Brian D Dynlacht, Wafik S El-Deiry, John W Elrod, Kurt Engeland, Gian Maria Fimia, Claudia Galassi, Carlo Ganini, Ana J Garcia-Saez, Abhishek D Garg, Carmen Garrido, Evripidis Gavathiotis, Motti Gerlic, Sourav Ghosh, Douglas R Green, Lloyd A Greene, Hinrich Gronemeyer, Georg Häcker, György Hajnóczky, J Marie Hardwick, Ygal Haupt, Sudan He, David M Heery, Michael O Hengartner, Claudio Hetz, David A Hildeman, Hidenori Ichijo, Satoshi Inoue, Marja Jäättelä, Ana Janic, Bertrand Joseph, Philipp J Jost, Thirumala-Devi Kanneganti, Michael Karin, Hamid Kashkar, Thomas Kaufmann, Gemma L Kelly, Oliver Kepp, Adi Kimchi, Richard N Kitsis, Daniel J Klionsky, Ruth Kluck, Dmitri V Krysko, Dagmar Kulms, Sharad Kumar, Sergio Lavandero, Inna N Lavrik, John J Lemasters, Gianmaria Liccardi, Andreas Linkermann, Stuart A Lipton, Richard A Lockshin, Carlos López-Otín, Tom Luedde, Marion MacFarlane, Frank Madeo, Walter Malorni, Gwenola Manic, Roberto Mantovani, Saverio Marchi, Jean-Christophe Marine, Seamus J Martin, Jean-Claude Martinou, Pier G Mastroberardino, Jan Paul Medema, Patrick Mehlen, Pascal Meier, Gerry Melino, Sonia Melino, Edward A Miao, Ute M Moll, Cristina Muñoz-Pinedo, Daniel J Murphy, Maria Victoria Niklison-Chirou, Flavia Novelli, Gabriel Núñez, Andrew Oberst, Dimitry Ofengeim, Joseph T Opferman, Moshe Oren, Michele Pagano, Theocharis Panaretakis, Manolis Pasparakis, Josef M Penninger, Francesca Pentimalli, David M Pereira, Shazib Pervaiz, Marcus E Peter, Paolo Pinton, Giovanni Porta, Jochen H M Prehn, Hamsa Puthalakath, Gabriel A Rabinovich, Krishnaraj Rajalingam, Kodi S Ravichandran, Markus Rehm, Jean-Ehrland Ricci, Rosario Rizzuto, Nirmal Robinson, Cecilia M P Rodrigues, Barak Rotblat, Carla V Rothlin, David C Rubinsztein, Thomas Rudel, Alessandro Rufini, Kevin M Ryan, Kristopher A Sarosiek, Akira Sawa, Emre Sayan, Kate Schroder, Luca Scorrano, Federico Sesti, Feng Shao, Yufang Shi, Giuseppe S Sica, John Silke, Hans-Uwe Simon, Antonella Sistigu, Anastasis Stephanou, Brent R Stockwell, Flavie Strapazzon, Andreas Strasser, Liming Sun, Erwei Sun, Qiang Sun, Gyorgy Szabadkai, Stephen W G Tait, Daolin Tang, Nektarios Tavernarakis, Carol M Troy, Boris Turk, Nicoletta Urbano, Peter Vandenabeele, Tom Vanden Berghe, Matthew G Vander Heiden, Jacqueline L Vanderluit, Alexei Verkhratsky, Andreas Villunger, Silvia von Karstedt, Anne K Voss, Karen H Vousden, Domagoj Vucic, Daniela Vuri, Erwin F Wagner, Henning Walczak, David Wallach, Ruoning Wang, Ying Wang, Achim Weber, Will Wood, Takahiro Yamazaki, Huang-Tian Yang, Zahra Zakeri, Joanna E Zawacka-Pankau, Lin Zhang, Haibing Zhang, Boris Zhivotovsky, Wenzhao Zhou, Mauro Piacentini, Guido Kroemer, Lorenzo GalluzziCell Death And Differentiation2023-04-26
Sequence-structure-function relationships in the microbial protein universe.Julia Koehler Leman, Pawel Szczerbiak, P Douglas Renfrew, Vladimir Gligorijevic, Daniel Berenberg, Tommi Vatanen, Bryn C Taylor, Chris Chandler, Stefan Janssen, Andras Pataki, Nick Carriero, Ian Fisk, Ramnik J Xavier, Rob Knight, Richard Bonneau, Tomasz KosciolekNature Communications2023-04-26
Susceptibility antibiotic screening reveals high rates of multidrug resistance of Salmonella, Shigella and Campylobacter in HIV infected and uninfected patients from Mozambique.Delfina F Hlashwayo, Emília V Noormahomed, Leonilde Bahule, Constance A Benson, Robert T Schooley, Betuel Sigaúque, Kim E Barrett, Custódio G BilaBMC Infectious Diseases2023-04-21
Preface: Gamma-Delta T Cells in Inflammation Part 1.Benjamin Bonavida, Vipin KumarCritical Reviews In Immunology2023-04-21
Crosstalk between skin microbiota and immune system in health and disease.Qian Liu, Ryan Ranallo, Carmen Rios, Elizabeth A Grice, Kyung Moon, Richard L GalloNature Immunology2023-04-20
Kernel-based genetic association analysis for microbiome phenotypes identifies host genetic drivers of beta-diversity.Hongjiao Liu, Wodan Ling, Xing Hua, Jee-Young Moon, Jessica S Williams-Nguyen, Xiang Zhan, Anna M Plantinga, Ni Zhao, Angela Zhang, Rob Knight, Qibin Qi, Robert D Burk, Robert C Kaplan, Michael C WuMicrobiome2023-04-20
Safety and Efficacy of Combination SARS-CoV-2 Neutralizing Monoclonal Antibodies Amubarvimab Plus Romlusevimab in Nonhospitalized Patients With COVID-19.Teresa H Evering, Kara W Chew, Mark J Giganti, Carlee Moser, Mauricio Pinilla, David Alain Wohl, Judith S Currier, Joseph J Eron, Arzhang Cyrus Javan, Rachel Bender Ignacio, David Margolis, Qing Zhu, Ji Ma, Lijie Zhong, Li Yan, Ulises D'Andrea Nores, Keila Hoover, Bharat Mocherla, Manish C Choudhary, Rinki Deo, Justin Ritz, William A Fischer, Courtney V Fletcher, Jonathan Z Li, Michael D Hughes, Davey Smith, Eric S Daar, Annals Of Internal Medicine2023-04-18
Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments.Alexander B Chase, Alexander Bogdanov, Alyssa M Demko, Paul R JensenThe ISME Journal2023-04-15
Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome.Bryn C Taylor, Mohammadsobhan Sheikh Andalibi, Stephen Wandro, Kelly C Weldon, Gregory D Sepich-Poore, Carolina S Carpenter, Serena Fraraccio, Donald Franklin, Jennifer E Iudicello, Scott Letendre, Sara Gianella, Igor Grant, Ronald J Ellis, Robert K Heaton, Rob Knight, Austin D SwaffordMicroorganisms2023-04-14
Toll-like receptor 2 activation in monocytes contributes to systemic inflammation and alcohol-associated liver disease in humans.Luca Maccioni, Joyce Kasavuli, Sophie Leclercq, Boris Pirlot, Géraldine Laloux, Yves Horsmans, Isabelle Leclercq, Bernd Schnabl, Peter StärkelHepatology Communications2023-04-14
An integrated view of anti-inflammatory and antifibrotic targets for the treatment of NASH.Frank Tacke, Tobias Puengel, Rohit Loomba, Scott L FriedmanJournal Of Hepatology2023-04-13
Role of the Microbiome in Gut-Heart-Kidney Cross Talk.Griet Glorieux, Sanjay K Nigam, Raymond Vanholder, Francis VerbekeCirculation Research2023-04-13
Chromosomal fragile site breakage by EBV-encoded EBNA1 at clustered repeats.Julia Su Zhou Li, Ammal Abbasi, Dong Hyun Kim, Scott M Lippman, Ludmil B Alexandrov, Don W ClevelandNature2023-04-12
DNA architectural protein CTCF facilitates subset-specific chromatin interactions to limit the formation of memory CD8 T cells.Sara Quon, Bingfei Yu, Brendan E Russ, Kirill Tsyganov, Hongtuyet Nguyen, Clara Toma, Maximilian Heeg, James D Hocker, J Justin Milner, Shane Crotty, Matthew E Pipkin, Stephen J Turner, Ananda W GoldrathImmunity2023-04-10
Part 2 Preface: Immune Checkpoint Inhibitors and Adverse Autoimmune Manifestations.Vipin Kumar, Benjamin BonavidaCritical Reviews In Immunology2023-04-10
Preface Part 1: Immune Checkpoint Inhibitors and Autoimmunity.Vipin Kumar, Benjamin BonavidaCritical Reviews In Immunology2023-04-07
Review of Major Social Determinants of Health in Schizophrenia-Spectrum Psychotic Disorders: III. Biology.Dilip V Jeste, Dolores Malaspina, Kara Bagot, Deanna M Barch, Steve Cole, Faith Dickerson, Amanda Dilmore, Charles L Ford, Nicole R Karcher, Joan Luby, Tarek Rajji, Adrián A Pinto-Tomas, Larry J YoungSchizophrenia Bulletin2023-04-06
Effects of a ketogenic and low-fat diet on the human metabolome, microbiome, and foodome in adults at risk for Alzheimer's disease.Amanda Hazel Dilmore, Cameron Martino, Bryan J Neth, Kiana A West, Jasmine Zemlin, Gibraan Rahman, Morgan Panitchpakdi, Michael J Meehan, Kelly C Weldon, Colette Blach, Leyla Schimmel, Rima Kaddurah-Daouk, Pieter C Dorrestein, Rob Knight, Suzanne Craft, Alzheimer's & Dementia : The Journal Of The Alzheimer's Association2023-04-05
The Escherichia coli Fur pan-regulon has few conserved but many unique regulatory targets.Ye Gao, Ina Bang, Yara Seif, Donghyuk Kim, Bernhard O PalssonNucleic Acids Research2023-04-05
Evolving approaches to profiling the microbiome in skin disease.Yang Chen, Rob Knight, Richard L GalloFrontiers In Immunology2023-04-04
Whole-genome sequences from wild-type and laboratory-evolved strains define the alleleome and establish its hallmarks.Edward Alexander Catoiu, Patrick Phaneuf, Jonathan Monk, Bernhard O PalssonProceedings Of The National Academy Of Sciences Of The United States Of America2023-04-03
Safety and Efficacy of Combined Tixagevimab and Cilgavimab Administered Intramuscularly or Intravenously in Nonhospitalized Patients With COVID-19: 2 Randomized Clinical Trials.Rachel A Bender Ignacio, Kara W Chew, Carlee Moser, Judith S Currier, Joseph J Eron, Arzhang Cyrus Javan, Mark J Giganti, Evgenia Aga, Michael Gibbs, Hervé Tchouakam Kouekam, Eva Johnsson, Mark T Esser, Keila Hoover, Gene Neytman, Matthew Newell, Eric S Daar, William Fischer, Courtney V Fletcher, Jonathan Z Li, Alexander L Greninger, Robert W Coombs, Michael D Hughes, Davey Smith, David Alain Wohl, JAMA Network Open2023-04-03
A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century.Erhard Bremer, Alexandra Calteau, Antoine Danchin, Colin Harwood, John D Helmann, Claudine Médigue, Bernhard O Palsson, Agnieszka Sekowska, David Vallenet, Abril Zuniga, Cristal ZunigaMicrobial Biotechnology2023-04-01
Transmissible SARS-CoV-2 variants with resistance to clinical protease inhibitors.Seyed Arad Moghadasi, Emmanuel Heilmann, Ahmed Magdy Khalil, Christina Nnabuife, Fiona L Kearns, Chengjin Ye, Sofia N Moraes, Francesco Costacurta, Morgan A Esler, Hideki Aihara, Dorothee von Laer, Luis Martinez-Sobrido, Timothy Palzkill, Rommie E Amaro, Reuben S HarrisScience Advances2023-03-29
Survival Trends in Sorafenib for Advanced Hepatocellular Carcinoma: A Reconstructed Individual Patient Data Meta-Analysis of Randomized Trials.Darren Jun Hao Tan, Ansel Shao Pin Tang, Wen Hui Lim, Cheng Han Ng, Benjamin Nah, Clarissa Fu, Jieling Xiao, Benjamin Koh, Phoebe Wen Lin Tay, Eunice X Tan, Margaret Teng, Nicholas Syn, Mark D Muthiah, Nobuharu Tamaki, Sung Won Lee, Beom Kyung Kim, Thomas Yau, Arndt Vogel, Rohit Loomba, Daniel Q HuangLiver Cancer2023-03-28
Global epidemiology of cirrhosis - aetiology, trends and predictions.Daniel Q Huang, Norah A Terrault, Frank Tacke, Lise Lotte Gluud, Marco Arrese, Elisabetta Bugianesi, Rohit LoombaNature Reviews. Gastroenterology & Hepatology2023-03-28
The transcription factor Mef2d regulates B:T synapse-dependent GC-T differentiation and IL-21-mediated humoral immunity.Ye-Ji Kim, Jeein Oh, Soohan Jung, Chan Johng Kim, Jinyong Choi, Yoon Kyung Jeon, Hyun Jik Kim, Ji-Won Kim, Chang-Hee Suh, Yoontae Lee, Sin-Hyeog Im, Shane Crotty, Youn Soo ChoiScience Immunology2023-03-24
Reconstructing the landscape of gut microbial species across 29,000 diverse individuals.Igor Segota, Jeramie D Watrous, Edward D Kantz, Shriram Nallamshetty, Saumya Tiwari, Susan Cheng, Mohit Jain, Tao LongNucleic Acids Research2023-03-24
Mitigating the risk of antimalarial resistance via covalent dual-subunit inhibition of the Plasmodium proteasome.Ioanna Deni, Barbara H Stokes, Kurt E Ward, Kate J Fairhurst, Charisse Flerida A Pasaje, Tomas Yeo, Shirin Akbar, Heekuk Park, Ryan Muir, Daniella S Bick, Wenhu Zhan, Hao Zhang, Yi Jing Liu, Caroline L Ng, Laura A Kirkman, Jehad Almaliti, Alexandra E Gould, Maëlle Duffey, Anthony J O'Donoghue, Anne-Catrin Uhlemann, Jacquin C Niles, Paula C A da Fonseca, William H Gerwick, Gang Lin, Matthew Bogyo, David A FidockCell Chemical Biology2023-03-22
The Underappreciated Role of Secretory IgA in IBD.Giorgos Bamias, Konstantina Kitsou, Jesús Rivera-NievesInflammatory Bowel Diseases2023-03-21
Synchronization of the circadian clock to the environment tracked in real time.Mingxu Fang, Archana G Chavan, Andy LiWang, Susan S GoldenProceedings Of The National Academy Of Sciences Of The United States Of America2023-03-20
Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria.Andre Mu, William P Klare, Sarah L Baines, C N Ignatius Pang, Romain Guérillot, Nichaela Harbison-Price, Nadia Keller, Jonathan Wilksch, Nguyen Thi Khanh Nhu, Minh-Duy Phan, Bernhard Keller, Brunda Nijagal, Dedreia Tull, Saravanan Dayalan, Hwa Huat Charlie Chua, Dominik Skoneczny, Jason Koval, Abderrahman Hachani, Anup D Shah, Nitika Neha, Snehal Jadhav, Sally R Partridge, Amanda J Cork, Kate Peters, Olivia Bertolla, Stephan Brouwer, Steven J Hancock, Laura Álvarez-Fraga, David M P De Oliveira, Brian Forde, Ashleigh Dale, Warasinee Mujchariyakul, Calum J Walsh, Ian Monk, Anna Fitzgerald, Mabel Lum, Carolina Correa-Ospina, Piklu Roy Chowdhury, Robert G Parton, James De Voss, James Beckett, Francois Monty, Jessica McKinnon, Xiaomin Song, John R Stephen, Marie Everest, Matt I Bellgard, Matthew Tinning, Michael Leeming, Dianna Hocking, Leila Jebeli, Nancy Wang, Nouri Ben Zakour, Serhat A Yasar, Stefano Vecchiarelli, Tonia Russell, Thiri Zaw, Tyrone Chen, Don Teng, Zena Kassir, Trevor Lithgow, Adam Jenney, Jason N Cole, Victor Nizet, Tania C Sorrell, Anton Y Peleg, David L Paterson, Scott A Beatson, Jemma Wu, Mark P Molloy, Anna E Syme, Robert J A Goode, Adam A Hunter, Grahame Bowland, Nicholas P West, Marc R Wilkins, Steven P Djordjevic, Mark R Davies, Torsten Seemann, Benjamin P Howden, Dana Pascovici, Sonika Tyagi, Ralf B Schittenhelm, David P De Souza, Malcolm J McConville, Jonathan R Iredell, Stuart J Cordwell, Richard A Strugnell, Timothy P Stinear, Mark A Schembri, Mark J WalkerNature Communications2023-03-18
The Evolution of Assessing Central Nervous System Complications in Human Immunodeficiency Virus: Where Do We Go From Here?Roger C McIntosh, Uraina S Clark, Mariana Cherner, Lucette A Cysique, Robert K Heaton, Jules Levin, Robert H Remien, April Thames, David J Moore, Leah H RubinThe Journal Of Infectious Diseases2023-03-17
Optimization of nutrient utilization efficiency and productivity for algal cultures under light and dark cycles using genome-scale model process control.Chien-Ting Li, Richard Eng, Cristal Zuniga, Kai-Wen Huang, Yiqun Chen, Karsten Zengler, Michael J BetenbaughNPJ Systems Biology And Applications2023-03-15
Characterization of SARS-CoV-2 Distribution and Microbial Succession in a Clinical Microbiology Testing Facility during the SARS-CoV-2 Pandemic.Govind Prasad Sah, Grace Kovalick, Jessica Chopyk, Peiting Kuo, Lina Huang, Pooja Ghatbale, Promi Das, Susan Realegeno, Rob Knight, Jack A Gilbert, David T PrideMicrobiology Spectrum2023-03-14
Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut.Matthew H Foley, Morgan E Walker, Allison K Stewart, Sarah O'Flaherty, Emily C Gentry, Shakshi Patel, Violet V Beaty, Garrison Allen, Meichen Pan, Joshua B Simpson, Caroline Perkins, Molly E Vanhoy, Michael K Dougherty, Sarah K McGill, Ajay S Gulati, Pieter C Dorrestein, Erin S Baker, Matthew R Redinbo, Rodolphe Barrangou, Casey M TheriotNature Microbiology2023-03-13
Effectiveness of BNT162b2 and CoronaVac vaccines against omicron in children aged 5 to 11 years.Eduardo A Oliveira, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Ludmila R Silva, Daniella B Martelli, Clara C Pinhati, Hercílio Martelli-JúniorWorld Journal Of Pediatrics : WJP2023-03-13
Shared genetic architecture between attention-deficit/hyperactivity disorder and lifespan.Laura Vilar-Ribó, Judit Cabana-Domínguez, Lourdes Martorell, Josep Antoni Ramos-Quiroga, Sandra Sanchez-Roige, Abraham A Palmer, Elisabet Vilella, Marta Ribasés, Gerard Muntané, María Soler ArtigasNeuropsychopharmacology : Official Publication Of The American College Of Neuropsychopharmacology2023-03-11
Association of the gut microbiome with kidney function and damage in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL).Brandilyn A Peters, Qibin Qi, Mykhaylo Usyk, Martha L Daviglus, Jianwen Cai, Nora Franceschini, James P Lash, Marc D Gellman, Bing Yu, Eric Boerwinkle, Rob Knight, Robert D Burk, Robert C KaplanGut Microbes2023-03-08
Captive and urban environments are associated with distinct gut microbiota in deer mice ().Jessica Diaz, Kent H Redford, Aspen T ReeseBiology Letters2023-03-08
Engineered bacteria producing aryl-hydrocarbon receptor agonists protect against ethanol-induced liver disease in mice.Tetsuya Kouno, Suling Zeng, Yanhan Wang, Yi Duan, Sonja Lang, Bei Gao, Phillipp Hartmann, Noemí Cabré, Cristina Llorente, Chloé Galbert, Patrick Emond, Harry Sokol, Michael James, Chun Cheih Chao, Jian-Rong Gao, Mylene Perreault, David L Hava, Bernd SchnablAlcoholism, Clinical And Experimental Research2023-03-05
Plasma metabolites with mechanistic and clinical links to the neurovascular disease cavernous angioma.Abhinav Srinath, Bingqing Xie, Ying Li, Je Yeong Sone, Sharbel Romanos, Chang Chen, Anukriti Sharma, Sean Polster, Pieter C Dorrestein, Kelly C Weldon, Dorothy DeBiasse, Thomas Moore, Rhonda Lightle, Janne Koskimäki, Dongdong Zhang, Agnieszka Stadnik, Kristina Piedad, Matthew Hagan, Abdallah Shkoukani, Julián Carrión-Penagos, Dehua Bi, Le Shen, Robert Shenkar, Yuan Ji, Ashley Sidebottom, Eric Pamer, Jack A Gilbert, Mark L Kahn, Mark D'Souza, Dinanath Sulakhe, Issam A Awad, Romuald GirardCommunications Medicine2023-03-03
The Combined Effects of Cannabis, Methamphetamine, and HIV on Neurocognition.Jeffrey M Rogers, Jennifer E Iudicello, Maria Cecilia G Marcondes, Erin E Morgan, Mariana Cherner, Ronald J Ellis, Scott L Letendre, Robert K Heaton, Igor GrantViruses2023-03-03
Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol.Matthew A Pendergraft, Pedro Belda-Ferre, Daniel Petras, Clare K Morris, Brock A Mitts, Allegra T Aron, MacKenzie Bryant, Tara Schwartz, Gail Ackermann, Greg Humphrey, Ethan Kaandorp, Pieter C Dorrestein, Rob Knight, Kimberly A PratherEnvironmental Science & Technology2023-03-02
Cell specialization in cyanobacterial biofilm development revealed by expression of a cell-surface and extracellular matrix protein.Alona Frenkel, Eli Zecharia, Daniel Gómez-Pérez, Eleonora Sendersky, Yevgeni Yegorov, Avi Jacob, Jennifer I C Benichou, York-Dieter Stierhof, Rami Parnasa, Susan S Golden, Eric Kemen, Rakefet SchwarzNPJ Biofilms And Microbiomes2023-03-02
Piezophilic Phenotype Is Growth Condition Dependent and Correlated with the Regulation of Two Sets of ATPase in Deep-Sea Piezophilic Bacterium SS9.An-Qi Li, Wei-Jia Zhang, Xue-Gong Li, Xu-Chong Bao, Xiao-Qing Qi, Long-Fei Wu, Douglas H BartlettMicroorganisms2023-03-02
Identification of CD8+ T cell - immune cell communications in ileal Crohn's disease.Han G Duong, Eunice J Choi, Paul Hsu, Natalie R Chiang, Shefali A Patel, Jocelyn G Olvera, Yi Chia Liu, Yun Hsuan Lin, Priscilla Yao, William H Wong, Cynthia S Indralingam, Matthew S Tsai, Brigid S Boland, Wei Wang, John T ChangClinical And Translational Gastroenterology2023-03-01
Complete Genome Sequence of an Escherichia coli Strain Isolated from Laboratory Mouse Stool for Use as a Chassis for Transgene Delivery to the Murine Microbiome.Nicole Siguenza, Baylee J Russell, R Alexander Richter, Amir ZarrinparMicrobiology Resource Announcements2023-03-01
Marinobazzanan, a Bazzanane-Type Sesquiterpenoid, Suppresses the Cell Motility and Tumorigenesis in Cancer Cells.Sultan Pulat, Prima F Hillman, Sojeong Kim, Ratnakar N Asolkar, Haerin Kim, Rui Zhou, İsa Taş, Chathurika D B Gamage, Mücahit Varlı, So-Yeon Park, Sung Chul Park, Inho Yang, Jongheon Shin, Dong-Chan Oh, Hangun Kim, Sang-Jip Nam, William FenicalMarine Drugs2023-02-25
The Gut Microbial Bile Acid Modulation and its Relevance to Digestive Health and Diseases.Kelly A Fogelson, Pieter C Dorrestein, Amir Zarrinpar, Rob KnightGastroenterology2023-02-23
Immunoglobulin Y antibodies against cytolysin reduce ethanol-induced liver disease in mice.Noemí Cabré, Phillipp Hartmann, Cristina Llorente, Tetsuya Kouno, Yanhan Wang, Suling Zeng, Hyun Young Kim, Xinlian Zhang, Tatiana Kisseleva, Subramanian Iyer, Sirisha Kudumala, Bernd SchnablHepatology (Baltimore, Md.)2023-02-23
Diet Quality and the Fecal Microbiota in Adults in the American Gut Project.Alexis D Baldeon, Daniel McDonald, Antonio Gonzalez, Rob Knight, Hannah D HolscherThe Journal Of Nutrition2023-02-22
Oral mucosal breaks trigger anti-citrullinated bacterial and human protein antibody responses in rheumatoid arthritis.R Camille Brewer, Tobias V Lanz, Caryn R Hale, Gregory D Sepich-Poore, Cameron Martino, Austin D Swafford, Thomas S Carroll, Sarah Kongpachith, Lisa K Blum, Serra E Elliott, Nathalie E Blachere, Salina Parveen, John Fak, Vicky Yao, Olga Troyanskaya, Mayu O Frank, Michelle S Bloom, Shaghayegh Jahanbani, Alejandro M Gomez, Radhika Iyer, Nitya S Ramadoss, Orr Sharpe, Sangeetha Chandrasekaran, Lindsay B Kelmenson, Qian Wang, Heidi Wong, Holly L Torres, Mark Wiesen, Dana T Graves, Kevin D Deane, V Michael Holers, Rob Knight, Robert B Darnell, William H Robinson, Dana E OrangeScience Translational Medicine2023-02-22
Determination of the Chromatin Openness in Bacterial Genomes.Mahmoud M Al-Bassam, Karsten ZenglerMethods In Molecular Biology (Clifton, N.J.)2023-02-22
Terpene biosynthesis in marine sponge animals.Kayla Wilson, Tristan de Rond, Immo Burkhardt, Taylor S Steele, Rebecca J B Schäfer, Sheila Podell, Eric E Allen, Bradley S MooreProceedings Of The National Academy Of Sciences Of The United States Of America2023-02-21
Selective IL-27 production by intestinal regulatory T cells permits gut-specific regulation of Th17 immunity.Chia-Hao Lin, Cheng-Jang Wu, Sunglim Cho, Rasika Patkar, Ling-Li Lin, Mei-Chi Chen, Elisabeth Israelsson, Joanne Betts, Magdalena Niedzielska, Shefali A Patel, Han G Duong, Romana R Gerner, Chia-Yun Hsu, Matthew Catley, Rose A Maciewicz, Hiutung Chu, Manuela Raffatellu, John T Chang, Li-Fan LuBioRxiv : The Preprint Server For Biology2023-02-21
Symptom and Viral Rebound in Untreated SARS-CoV-2 Infection.Rinki Deo, Manish C Choudhary, Carlee Moser, Justin Ritz, Eric S Daar, David A Wohl, Alexander L Greninger, Joseph J Eron, Judith S Currier, Michael D Hughes, Davey M Smith, Kara W Chew, Jonathan Z Li, Annals Of Internal Medicine2023-02-21
Differences in Bacterial Translocation and Liver Injury in Ethanol Versus Diet-Induced Liver Disease.Cynthia L Hsu, Yanhan Wang, Yi Duan, Huikuan Chu, Phillipp Hartmann, Cristina Llorente, Rongrong Zhou, Bernd SchnablDigestive Diseases And Sciences2023-02-20
Microbiome response in an urban river system is dominated by seasonality over wastewater treatment upgrades.Sho M Kodera, Anukriti Sharma, Cameron Martino, Melissa Dsouza, Mark Grippo, Holly L Lutz, Rob Knight, Jack A Gilbert, Cristina Negri, Sarah M AllardEnvironmental Microbiome2023-02-19
Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause deadly disease.Panpan Zhou, Ge Song, Hejun Liu, Meng Yuan, Wan-Ting He, Nathan Beutler, Xueyong Zhu, Longping V Tse, David R Martinez, Alexandra Schäfer, Fabio Anzanello, Peter Yong, Linghang Peng, Katharina Dueker, Rami Musharrafieh, Sean Callaghan, Tazio Capozzola, Oliver Limbo, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, David Nemazee, Joseph G Jardine, Yana Safonova, Bryan Briney, Thomas F Rogers, Ian A Wilson, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees AndrabiImmunity2023-02-16
Using machine learning to improve our understanding of COVID-19 infection in children.Shraddha Piparia, Andrew Defante, Kelan Tantisira, Julie RyuPloS One2023-02-15
Viral Receptor-Binding Protein Evolves New Function through Mutations That Cause Trimer Instability and Functional Heterogeneity.Hannah M Strobel, Sweetzel D Labador, Dwaipayan Basu, Mrudula Sane, Kevin D Corbett, Justin R MeyerMolecular Biology And Evolution2023-02-14
APOBEC3A Catalytic Inactivity Mutation Induces Tertiary Structure Destabilization.Katherine F M Jones, Mohamed Shehata, Michael A Carpenter, Rommie E Amaro, Daniel A HarkiACS Medicinal Chemistry Letters2023-02-14
Metagenome-Assembled Genomes from Murine Fecal Microbiomes Dominated by Uncharacterized Bacteria.Kiarash Rastegar, Scott T Kelley, Varykina G ThackrayMicrobiology Resource Announcements2023-02-13
Nafcillin Augmentation of Daptomycin and Cathelicidin LL-37 Killing of Methicillin-resistant Staphylococcus epidermidis: Foundations of Successful Therapy of Endocarditis.Lucy Catteau, Yvan Diaz Iglesias, Hannah Tsunemoto, Joseph Pogliano, Françoise Van Bambeke, Victor Nizet, George SakoulasInternational Journal Of Antimicrobial Agents2023-02-10
Diverse Microbial Hot Spring Mat Communities at Black Canyon of the Colorado River.Ivan J Moreno, Bianca Brahamsha, Mohamed S Donia, Brian PalenikMicrobial Ecology2023-02-09
Man vs Microbes - The Race of the Century.Ericka Anderson, Bipin Nair, Victor Nizet, Geetha KumarJournal Of Medical Microbiology2023-02-07
Malice in Chains.Joshua Osowicki, Victor NizetThe Journal Of Infectious Diseases2023-02-07
T Cell Responses to SARS-CoV-2.Alessandro Sette, John Sidney, Shane CrottyAnnual Review Of Immunology2023-02-07
Laboratory evolution reveals general and specific tolerance mechanisms for commodity chemicals.Rebecca M Lennen, Hyun Gyu Lim, Kristian Jensen, Elsayed T Mohammed, Patrick V Phaneuf, Myung Hyun Noh, Sailesh Malla, Rosa A Börner, Ksenia Chekina, Emre Özdemir, Ida Bonde, Anna Koza, Jérôme Maury, Lasse E Pedersen, Lars Y Schöning, Nikolaus Sonnenschein, Bernhard O Palsson, Alex T Nielsen, Morten O A Sommer, Markus J Herrgård, Adam M FeistMetabolic Engineering2023-02-03
The Molecular Effect of Wearing Silver-Threaded Clothing on the Human Skin.Alexey V Melnik, Chris Callewaert, Kathleen Dorrestein, Rosie Broadhead, Jeremiah J Minich, Madeleine Ernst, Greg Humphrey, Gail Ackermann, Rob Gathercole, Alexander A Aksenov, Rob Knight, Pieter C DorresteinMSystems2023-02-01
Acute and Postacute COVID-19 Outcomes Among Immunologically Naive Adults During Delta vs Omicron Waves.Margaret K Doll, Alpana Waghmare, Antje Heit, Brianna Levenson Shakoor, Louise E Kimball, Nina Ozbek, Rachel L Blazevic, Larry Mose, Jim Boonyaratanakornkit, Terry L Stevens-Ayers, Kevin Cornell, Benjamin D Sheppard, Emma Hampson, Faria Sharmin, Benjamin Goodwin, Jennifer M Dan, Tom Archie, Terry O'Connor, David Heckerman, Frank Schmitz, Michael Boeckh, Shane CrottyJAMA Network Open2023-02-01
A Camptothetin Analog, Topotecan, Promotes HIV Latency via Interference with HIV Transcription and RNA Splicing.Amey Mukim, Davey M Smith, Savitha Deshmukh, Andrew A Qazi, Nadejda Beliakova-BethellJournal Of Virology2023-01-31
Qualitative interviews to evaluate content validity of the ACTIV-2 COVID-19 Symptom Diary (ACSD).Louis S Matza, Katie D Stewart, April N Naegeli, Kayla M Mills, Karin S Coyne, Kara W Chew, Michael D Hughes, Davey M SmithJournal Of Patient-reported Outcomes2023-01-31
Early transcriptional and epigenetic divergence of CD8+ T cells responding to acute versus chronic infection.Lauren K Quezada, Wenhao Jin, Yi Chia Liu, Eleanor S Kim, Zhaoren He, Cynthia S Indralingam, Tiffani Tysl, Lara Labarta-Bajo, Ellen J Wehrens, Yeara Jo, Katelynn R Kazane, Christopher Hattori, Elina I Zuniga, Gene W Yeo, John T ChangPLoS Biology2023-01-30
Author Correction: Long-primed germinal centres with enduring affinity maturation and clonal migration.Jeong Hyun Lee, Henry J Sutton, Christopher A Cottrell, Ivy Phung, Gabriel Ozorowski, Leigh M Sewall, Rebecca Nedellec, Catherine Nakao, Murillo Silva, Sara T Richey, Jonathan L Torres, Wen-Hsin Lee, Erik Georgeson, Michael Kubitz, Sam Hodges, Tina-Marie Mullen, Yumiko Adachi, Kimberly M Cirelli, Amitinder Kaur, Carolina Allers, Marissa Fahlberg, Brooke F Grasperge, Jason P Dufour, Faith Schiro, Pyone P Aye, Oleksandr Kalyuzhniy, Alessia Liguori, Diane G Carnathan, Guido Silvestri, Xiaoying Shen, David C Montefiori, Ronald S Veazey, Andrew B Ward, Lars Hangartner, Dennis R Burton, Darrell J Irvine, William R Schief, Shane CrottyNature2023-01-30
Enhancer-instructed epigenetic landscape and chromatin compartmentalization dictate a primary antibody repertoire protective against specific bacterial pathogens.E Mauricio Barajas-Mora, Lindsay Lee, Hanbin Lu, J Andrés Valderrama, Elisabet Bjanes, Victor Nizet, Ann J Feeney, Ming Hu, Cornelis MurreNature Immunology2023-01-30
Malassezia restricta promotes alcohol-induced liver injury.Suling Zeng, Phillipp Hartmann, Minji Park, Yi Duan, Sonja Lang, Cristina Llorente, Yanhan Wang, Noemí Cabré, Derrick E Fouts, Petra Bacher, Won Hee Jung, Peter Stärkel, Bernd SchnablHepatology Communications2023-01-27
Insulin-regulated serine and lipid metabolism drive peripheral neuropathy.Michal K Handzlik, Jivani M Gengatharan, Katie E Frizzi, Grace H McGregor, Cameron Martino, Gibraan Rahman, Antonio Gonzalez, Ana M Moreno, Courtney R Green, Lucie S Guernsey, Terry Lin, Patrick Tseng, Yoichiro Ideguchi, Regis J Fallon, Amandine Chaix, Satchidananda Panda, Prashant Mali, Martina Wallace, Rob Knight, Marin L Gantner, Nigel A Calcutt, Christian M MetalloNature2023-01-25
Deep-learning optimized DEOCSU suite provides an iterable pipeline for accurate ChIP-exo peak calling.Ina Bang, Sang-Mok Lee, Seojoung Park, Joon Young Park, Linh Khanh Nong, Ye Gao, Bernhard O Palsson, Donghyuk KimBriefings In Bioinformatics2023-01-25
One Week of Oral Camostat Versus Placebo in Nonhospitalized Adults With Mild-to-Moderate Coronavirus Disease 2019: A Randomized Controlled Phase 2 Trial.Nikolaus Jilg, Kara W Chew, Mark J Giganti, Eric S Daar, David A Wohl, Arzhang Cyrus Javan, Amy Kantor, Carlee Moser, Robert W Coombs, Gene Neytman, Keila Hoover, Atasi Jana, Phil A Hart, Alexander L Greninger, Bob Szurgot, Joseph J Eron, Judith S Currier, Michael D Hughes, Davey M Smith, Jonathan Z Li, Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2023-01-25
Integrated Multi-Cohort Analysis of the Parkinson's Disease Gut Metagenome.Joseph C Boktor, Gil Sharon, Leo A Verhagen Metman, Deborah A Hall, Phillip A Engen, Zoe Zreloff, Daniel J Hakim, John W Bostick, James Ousey, Danielle Lange, Gregory Humphrey, Gail Ackermann, Martha Carlin, Rob Knight, Ali Keshavarzian, Sarkis K MazmanianMovement Disorders : Official Journal Of The Movement Disorder Society2023-01-24
Hepatic pIgR-mediated secretion of IgA limits bacterial translocation and prevents ethanol-induced liver disease in mice.Tim Hendrikx, Sonja Lang, Dragana Rajcic, Yanhan Wang, Sara McArdle, Kenneth Kim, Zbigniew Mikulski, Bernd SchnablGut2023-01-23
Comprehensive evaluation of shotgun metagenomics, amplicon sequencing, and harmonization of these platforms for epidemiological studies.Mykhaylo Usyk, Brandilyn A Peters, Smruthi Karthikeyan, Daniel McDonald, Christopher C Sollecito, Yoshiki Vazquez-Baeza, Justin P Shaffer, Marc D Gellman, Gregory A Talavera, Martha L Daviglus, Bharat Thyagarajan, Rob Knight, Qibin Qi, Robert Kaplan, Robert D BurkCell Reports Methods2023-01-23
Safety and Efficacy of Ceftolozane/Tazobactam Versus Meropenem in Neonates and Children With Complicated Urinary Tract Infection, Including Pyelonephritis: A Phase 2, Randomized Clinical Trial.Emmanuel Roilides, Negar Ashouri, John S Bradley, Matthew G Johnson, Julia Lonchar, Feng-Hsiu Su, Jennifer A Huntington, Myra W Popejoy, Mekki Bensaci, Carisa De Anda, Elizabeth G Rhee, Christopher J BrunoThe Pediatric Infectious Disease Journal2023-01-23
Predictors of COVID-19 vaccine uptake among people who inject drugs.Steffanie A Strathdee, Daniela Abramovitz, Carlos F Vera, Irina Artamonova, Thomas L Patterson, Davey M Smith, Antoine Chaillon, Angela R BazziVaccine2023-01-23
A tissue atlas of ulcerative colitis revealing evidence of sex-dependent differences in disease-driving inflammatory cell types and resistance to TNF inhibitor therapy.Aaron T Mayer, Derek R Holman, Anav Sood, Utkarsh Tandon, Salil S Bhate, Sunil Bodapati, Graham L Barlow, Jeff Chang, Sarah Black, Erica C Crenshaw, Alexander N Koron, Sarah E Streett, Sanjiv S Gambhir, William J Sandborn, Brigid S Boland, Trevor Hastie, Robert Tibshirani, John T Chang, Garry P Nolan, Christian M Schürch, Stephan RogallaScience Advances2023-01-20
Model-driven experimental design workflow expands understanding of regulatory role of Nac in .Joon Young Park, Sang-Mok Lee, Ali Ebrahim, Zoe K Scott-Nevros, Jaehyung Kim, Laurence Yang, Anand Sastry, Sang Woo Seo, Bernhard O Palsson, Donghyuk KimNAR Genomics And Bioinformatics2023-01-20
Detection of Bacteria in Bladder Mucosa of Adult Females.Alan J Wolfe, David J Rademacher, Carine R Mores, Robert J Evans, Tyler Overholt, Thomas Halverson, Roberto Limeira, Catherine Matthews, Gopal Badlani, Linda Brubaker, Stephen J WalkerThe Journal Of Urology2023-01-19
Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research.Jack A Gilbert, Irene L G Newton, Gemma RegueraMSystems2023-01-19
Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research.Jack A Gilbert, Irene L G Newton, Gemma RegueraApplied And Environmental Microbiology2023-01-19
Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research.Jack A Gilbert, Irene L G Newton, Gemma RegueraMicrobiology Resource Announcements2023-01-19
Association of subjective and objective measures of sleep with gut microbiota composition and diversity in older men: The Osteoporotic Fractures in Men (MrOS) study.Mehrbod Estaki, Lisa Langsetmo, Michelle Shardell, Anna Mischel, Lingjing Jiang, Yuan Zhong, Christopher Kaufmann, Rob Knight, Katie Stone, Deborah KadoThe Journals Of Gerontology. Series A, Biological Sciences And Medical Sciences2023-01-19
Ablation of Adar1 in myeloid cells imprints a global antiviral state in the lung and heightens early immunity against SARS-CoV-2.Julia Z Adamska, Rohit Verma, Shakti Gupta, Thomas Hagan, Florian Wimmers, Katharine Floyd, Qin Li, Erika V Valore, Yanli Wang, Meera Trisal, José G Vilches-Moure, Shankar Subramaniam, Carl R Walkley, Mehul S Suthar, Jin Billy Li, Bali PulendranCell Reports2023-01-17
Cataloging natural sialic acids and other nonulosonic acids (NulOs), and their representation using the Symbol Nomenclature for Glycans.Amanda L Lewis, Philip Toukach, Evan Bolton, Xi Chen, Martin Frank, Thomas Lütteke, Yuriy Knirel, Ian Schoenhofen, Ajit Varki, Evgeny Vinogradov, Robert J Woods, Natasha Zachara, Jian Zhang, Johannis P Kamerling, Sriram Neelamegham, Glycobiology2023-01-15
Stability of the fecal and oral microbiome over two years at -80°C for multiple collection methods.Semi Zouiouich, Doratha A Byrd, Xing Hua, Smriti Karwa, Yunhu Wan, Jianxin Shi, Gregory C Humphrey, Gail L Ackermann, Rob Knight, Christian C Abnet, Emily Vogtmann, Rashmi SinhaCancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology2023-01-13
Any alcohol use in NAFLD patients is associated with significant changes to the intestinal virome.Cynthia L Hsu, Sonja Lang, Münevver Demir, Derrick E Fouts, Peter Stärkel, Bernd SchnablHepatology (Baltimore, Md.)2023-01-13
Genomic and Spectroscopic Signature-Based Discovery of Natural Macrolactams.Yern-Hyerk Shin, Ji Hyeon Im, Ilnam Kang, Eunji Kim, Sung Chul Jang, Eunji Cho, Daniel Shin, Sunghoon Hwang, Young Eun Du, Thanh-Hau Huynh, Keebeom Ko, Yoon-Joo Ko, Sang-Jip Nam, Takayoshi Awakawa, Jeeyeon Lee, Suckchang Hong, Ikuro Abe, Bradley S Moore, William Fenical, Yeo Joon Yoon, Jang-Cheon Cho, Sang Kook Lee, Ki-Bong Oh, Dong-Chan OhJournal Of The American Chemical Society2023-01-12
Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an Model for Cheese Communities.Christina C Saak, Emily C Pierce, Cong B Dinh, Daniel Portik, Richard Hall, Meredith Ashby, Rachel J DuttonMSystems2023-01-09
Comprehensive whole genome sequencing with hybrid assembly of multi-drug resistant isolate causing cerebral abscess.Monika Kumaraswamy, Alison Coady, Richard Szubin, Thomas Cs Martin, Bernhard Palsson, Victor Nizet, Jonathan M MonkCurrent Research In Microbial Sciences2023-01-09
Interactions between perceived stress and microbial-host immune components: two demographically and geographically distinct pregnancy cohorts.Beatriz Peñalver Bernabé, Pauline M Maki, Janet L Cunningham, Tory Eisenlohr-Moul, Lisa Tussing-Humphreys, Ian M Carroll, Samantha Meltzer-Brody, Jack A Gilbert, Mary KimmelTranslational Psychiatry2023-01-06
Stability, robustness, and containment: preparing synthetic biology for real-world deployment.Shalni Kumar, Jeff HastyCurrent Opinion In Biotechnology2023-01-06
Residential green environments are associated with human milk oligosaccharide diversity and composition.Mirkka Lahdenperä, Laura Galante, Carlos Gonzales-Inca, Jussi Vahtera, Jaana Pentti, Samuli Rautava, Niina Käyhkö, Chloe Yonemitsu, Julia Gupta, Lars Bode, Hanna LagströmScientific Reports2023-01-05
Wastewater surveillance for public health.Joshua I Levy, Kristian G Andersen, Rob Knight, Smruthi KarthikeyanScience (New York, N.Y.)2023-01-05
Natural killer cells for antiviral therapy.Davey M Smith, Jolie R Schafer, Brian Tullius, Laura Witkam, Silke PaustScience Translational Medicine2023-01-04
Can a mucosal microbiota signature predict disease severity, survival, and disease recurrence in PSC?Phillipp Hartmann, Bernd SchnablHepatology (Baltimore, Md.)2023-01-03
Mutualism-enhancing mutations dominate early adaptation in a two-species microbial community.Sandeep Venkataram, Huan-Yu Kuo, Erik F Y Hom, Sergey KryazhimskiyNature Ecology & Evolution2023-01-02
Cocirculation and replacement of SARS-CoV-2 variants in crowded settings and marginalized populations along the US-Mexico border.Antoine Chaillon, Ietza Bojorquez, Jaime Sepúlveda, Alicia Yolanda Harvey-Vera, M Gudelia Rangel, Britt Skaathun, Sanjay R Mehta, Caroline Ignacio, Magali Porrachia, Davey M Smith, Steffanie A StrathdeeSalud Publica De Mexico2023-01-02
Higher-order interactions shape microbial interactions as microbial community complexity increases.Manon A Morin, Anneliese J Morrison, Michael J Harms, Rachel J DuttonScientific Reports2022-12-31
Antiviral therapy use and related outcomes in patients with cancer and viral infections: results from SWOG S1204.Jessica P Hwang, Kathryn B Arnold, Joseph M Unger, Rashmi Chugh, Monica A Tincopa, Rohit Loomba, Dawn Hershman, Scott D RamseySupportive Care In Cancer : Official Journal Of The Multinational Association Of Supportive Care In Cancer2022-12-31
Mitigating Infectious morbidity and Growth deficits in HIV-exposed uninfected infanTs with human Milk Oligosaccharide (MIGH-T MO): a randomised trial protocol.Rupak Shivakoti, Amy L Slogrove, Barbara Laughton, Mehr Shafiq, Elisma Schoeman, Richard H Glashoff, Cheng-Shiun Leu, Shuang Wang, Lars Bode, Grace Aldrovandi, Louise KuhnBMJ Open2022-12-30
High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917.Max van 't Hof, Omkar S Mohite, Jonathan M Monk, Tilmann Weber, Bernhard O Palsson, Morten O A SommerBMC Bioinformatics2022-12-30
Breastfeeding enrichment of B. longum subsp. infantis mitigates the effect of antibiotics on the microbiota and childhood asthma risk.Darlene L Y Dai, Charisse Petersen, Courtney Hoskinson, Kate L Del Bel, Allan B Becker, Theo J Moraes, Piushkumar J Mandhane, B Brett Finlay, Elinor Simons, Anita L Kozyrskyj, David M Patrick, Padmaja Subbarao, Lars Bode, Meghan B Azad, Stuart E TurveyMed (New York, N.Y.)2022-12-29
The gut microbiome is a significant risk factor for future chronic lung disease.Yang Liu, Shu Mei Teo, Guillaume Meric, Howard H F Tang, Qiyun Zhu, Jon G Sanders, Yoshiki Vazquez-Baeza, Karin Verspoor, Ville A Vartiainen, Pekka Jousilahti, Leo Lahti, Teemu Niiranen, Aki S Havulinna, Rob Knight, Veikko Salomaa, Michael InouyeThe Journal Of Allergy And Clinical Immunology2022-12-29
SREBP signaling is essential for effective B cell responses.Wei Luo, Julia Z Adamska, Chunfeng Li, Rohit Verma, Qing Liu, Thomas Hagan, Florian Wimmers, Shakti Gupta, Yupeng Feng, Wenxia Jiang, Jiehao Zhou, Erika Valore, Yanli Wang, Meera Trisal, Shankar Subramaniam, Timothy F Osborne, Bali PulendranNature Immunology2022-12-28
In vitro Activity of Ceftaroline Against an International Collection of Kingella kingae Isolates Recovered From Carriers and Invasive Infections.Joshua M Maher, Rodrigo E Mendes, Holly K Huynh, Eric A Porsch, Joseph W St Geme Iii, Pablo Yagupsky, John BradleyThe Pediatric Infectious Disease Journal2022-12-28
Safety and microbiological activity of phage therapy in persons with cystic fibrosis colonized with Pseudomonas aeruginosa: study protocol for a phase 1b/2, multicenter, randomized, double-blind, placebo-controlled trial.Pranita D Tamma, Maria Souli, Michael Billard, Joseph Campbell, Douglas Conrad, Damon W Ellison, Beth Evans, Scott R Evans, Kerryl E Greenwood-Quaintance, Andrey A Filippov, Holly S Geres, Toshimitsu Hamasaki, Lauren Komarow, Mikeljon P Nikolich, Thomas P Lodise, Seema U Nayak, Carmelle Norice-Tra, Robin Patel, David Pride, Janie Russell, Daria Van Tyne, Henry F Chambers, Vance G FowlerJr, Robert T Schooley, Trials2022-12-28
Quantifying (non)parallelism of gut microbial community change using multivariate vector analysis.Andreas Härer, Diana J RennisonEcology And Evolution2022-12-28
Predicting stress response and improved protein overproduction in Bacillus subtilis.Juan D Tibocha-Bonilla, Cristal Zuñiga, Asama Lekbua, Colton Lloyd, Kevin Rychel, Katie Short, Karsten ZenglerNPJ Systems Biology And Applications2022-12-27
The RISE FOR HEALTH study: Methods for in-person assessment and biospecimen collection.Linda Brubaker, Julia Barthold, Colleen M Fitzgerald, Kimberly Kenton, Cora E Lewis, Jerry Lowder, Emily S Lukacz, Alayne Markland, Melanie Meister, Janis Miller, Elizabeth R Mueller, Kyle Rudser, Ariana L Smith, Diane K Newman, Neurourology And Urodynamics2022-12-27
Minireview: Engineering evolution to reconfigure phenotypic traits in microbes for biotechnological applications.Kangsan Kim, Minjeong Kang, Sang-Hyeok Cho, Eojin Yoo, Ui-Gi Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan ChoComputational And Structural Biotechnology Journal2022-12-24
Association between inflammation, reward processing, and ibuprofen-induced increases of miR-23b in astrocyte-enriched extracellular vesicles: A randomized, placebo-controlled, double-blind, exploratory trial in healthy individuals.Kaiping Burrows, Leandra K Figueroa-Hall, Ahlam M Alarbi, Jennifer L Stewart, Rayus Kuplicki, Chibing Tan, Bethany N Hannafon, Rajagopal Ramesh, Jonathan Savitz, Sahib Khalsa, T Kent Teague, Victoria B Risbrough, Martin P PaulusBrain, Behavior, & Immunity - Health2022-12-24
SARS-CoV-2 spike conformation determines plasma neutralizing activity elicited by a wide panel of human vaccines.John E Bowen, Young-Jun Park, Cameron Stewart, Jack T Brown, William K Sharkey, Alexandra C Walls, Anshu Joshi, Kaitlin R Sprouse, Matthew McCallum, M Alejandra Tortorici, Nicholas M Franko, Jennifer K Logue, Ignacio G Mazzitelli, Annalee W Nguyen, Rui P Silva, Yimin Huang, Jun Siong Low, Josipa Jerak, Sasha W Tiles, Kumail Ahmed, Asefa Shariq, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Gyorgy Snell, Christine M Posavad, Najeeha Talat Iqbal, Jorge Geffner, Alessandra Bandera, Andrea Gori, Federica Sallusto, Jennifer A Maynard, Shane Crotty, Wesley C Van Voorhis, Carlos Simmerling, Renata Grifantini, Helen Y Chu, Davide Corti, David VeeslerScience Immunology2022-12-23
Healthy dietary patterns are associated with the gut microbiome in the Hispanic Community Health Study/Study of Latinos.Brandilyn A Peters, Jiaqian Xing, Guo-Chong Chen, Mykhaylo Usyk, Zheng Wang, Amanda C McClain, Bharat Thyagarajan, Martha L Daviglus, Daniela Sotres-Alvarez, Frank B Hu, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin QiThe American Journal Of Clinical Nutrition2022-12-22
S. aureus drives itch and scratch-induced skin damage through a V8 protease-PAR1 axis.Liwen Deng, Flavia Costa, Kimbria J Blake, Samantha Choi, Arundhasa Chandrabalan, Muhammad Saad Yousuf, Stephanie Shiers, Daniel Dubreuil, Daniela Vega-Mendoza, Corinne Rolland, Celine Deraison, Tiphaine Voisin, Michelle D Bagood, Lucia Wesemann, Abigail M Frey, Joseph S Palumbo, Brian J Wainger, Richard L Gallo, Juan-Manuel Leyva-Castillo, Nathalie Vergnolle, Theodore J Price, Rithwik Ramachandran, Alexander R Horswill, Isaac M ChiuCell2022-12-22
Outer Membrane Vesicle-Coated Nanoparticle Vaccine Protects Against Pneumonia and Sepsis.Elisabet Bjanes, Jiarong Zhou, Tariq Qayum, Nishta Krishnan, Raymond H Zurich, Nitasha D Menon, Alexandria Hoffman, Ronnie H Fang, Liangfang Zhang, Victor NizetAdvanced Nanobiomed Research2022-12-22
Bamlanivimab therapy for acute COVID-19 does not blunt SARS-CoV-2-specific memory T cell responses.Sydney I Ramirez, Alba Grifoni, Daniela Weiskopf, Urvi M Parikh, Amy Heaps, Farhoud Faraji, Scott F Sieg, Justin Ritz, Carlee Moser, Joseph J Eron, Judith S Currier, Paul Klekotka, Alessandro Sette, David A Wohl, Eric S Daar, Michael D Hughes, Kara W Chew, Davey M Smith, Shane Crotty, JCI Insight2022-12-22
Fungal infections and the fungal microbiome in hepatobiliary disorders.Phillipp Hartmann, Bernd SchnablJournal Of Hepatology2022-12-21
The Chromatin Regulator Mll1 Supports T Follicular Helper Cell Differentiation by Controlling Expression of Bcl6, LEF-1, and TCF-1.Simon Bélanger, Sonya Haupt, Caterina E Faliti, Adam Getzler, Jinyong Choi, Huitian Diao, Pabalu P Karunadharma, Nicholas A Bild, Matthew E Pipkin, Shane CrottyJournal Of Immunology (Baltimore, Md. : 1950)2022-12-20
Conservation of Nematocida microsporidia gene expression and host response in Caenorhabditis nematodes.Yin Chen Wan, Emily R Troemel, Aaron W ReinkePloS One2022-12-19
ConCISE: Consensus Annotation Propagation of Ion Features in Untargeted Tandem Mass Spectrometry Combining Molecular Networking and Metabolite Structure Prediction.Zachary A Quinlan, Irina Koester, Allegra T Aron, Daniel Petras, Lihini I Aluwihare, Pieter C Dorrestein, Craig E Nelson, Linda Wegley KellyMetabolites2022-12-16
Peptide Amphiphile Mediated Co-assembly for Nanoplasmonic Sensing.Zhicheng Jin, Yi Li, Ke Li, Jiajing Zhou, Justin Yeung, Chuxuan Ling, Wonjun Yim, Tengyu He, Yong Cheng, Ming Xu, Matthew N Creyer, Yu-Ci Chang, Pavla Fajtová, Maurice Retout, Baiyan Qi, Shuzhou Li, Anthony J O'Donoghue, Jesse V JokerstAngewandte Chemie (International Ed. In English)2022-12-15
Exploring the value of a global gene drive project registry.Riley I Taitingfong, Cynthia Triplett, Váleri N Vásquez, Ramya M Rajagopalan, Robyn Raban, Aaron Roberts, Gerard Terradas, Bridget Baumgartner, Claudia Emerson, Fred Gould, Fredros Okumu, Cynthia E Schairer, Hervé C Bossin, Leah Buchman, Karl J Campbell, Anna Clark, Jason Delborne, Kevin Esvelt, Joshua Fisher, Robert M Friedman, Gigi Gronvall, Nikos Gurfield, Elizabeth Heitman, Natalie Kofler, Todd Kuiken, Jennifer Kuzma, Pablo Manrique-Saide, John M Marshall, Michael Montague, Amy C Morrison, Chris C Opesen, Ryan Phelan, Antoinette Piaggio, Hector Quemada, Larisa Rudenko, Natéwindé Sawadogo, Robert Smith, Holly Tuten, Anika Ullah, Adam Vorsino, Nikolai Windbichler, Omar S Akbari, Kanya Long, James V Lavery, Sam Weiss Evans, Karen Tountas, Cinnamon S BlossNature Biotechnology2022-12-15
Deep Dive into the Long Haul: Analysis of Symptom Clusters and Risk Factors for Post-Acute Sequelae of COVID-19 to Inform Clinical Care.Nicole H Goldhaber, Jordan N Kohn, William Scott Ogan, Amy Sitapati, Christopher A Longhurst, Angela Wang, Susan Lee, Suzi Hong, Lucy E HortonInternational Journal Of Environmental Research And Public Health2022-12-15
Potentially probiotic Limosilactobacillus reuteri from human milk strengthens the gut barrier in T84 cells and a murine enteroid model.Jasia Anjum, Andrew Quach, Preedajit Wongkrasant, Shahid Nazir, Muhammad Tariq, Kim E Barrett, Arsalan ZaidiJournal Of Applied Microbiology2022-12-14
Concurrent validity and reliability of at-home teleneuropsychological evaluations among people with and without HIV.Maulika Kohli, Arin Fisher, Ni Sun-Suslow, Anne Heaton, Matthew S Dawson, Jennifer Marquie, Donald R Franklin, Maria Marquine, Jennifer E Iudicello, Robert K Heaton, David J MooreJournal Of The International Neuropsychological Society : JINS2022-12-13
Stool multi-omics for the study of host-microbe interactions in inflammatory bowel disease.Consuelo Sauceda, Charlie Bayne, Khadijeh Sudqi, Antonio Gonzalez, Parambir S Dulai, Rob Knight, David J Gonzalez, Carlos G GonzalezGut Microbes2022-12-12
Revealing Causes for False-Positive and False-Negative Calling of Gene Essentiality in Escherichia coli Using Transposon Insertion Sequencing.Donghui Choe, Uigi Kim, Soonkyu Hwang, Sang Woo Seo, Donghyuk Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan ChoMSystems2022-12-12
Comparison of bacterial suppression by phage cocktails, dual-receptor generalists, and coevolutionarily trained phages.Joshua M Borin, Justin J Lee, Krista R Gerbino, Justin R MeyerEvolutionary Applications2022-12-09
Host-microbiome interactions in the holobiome of Atopic Dermatitis.Elise Burger, Richard GalloThe Journal Of Allergy And Clinical Immunology2022-12-09
Effects of Variation in Urine Sample Storage Conditions on 16S Urogenital Microbiome Analyses.Tanya Kumar, MacKenzie Bryant, Kalen Cantrell, Se Jin Song, Daniel McDonald, Helena M Tubb, Sawyer Farmer, Emily S Lukacz, Linda Brubaker, Rob KnightMSystems2022-12-08
Breathing and Tilting: Mesoscale Simulations Illuminate Influenza Glycoprotein Vulnerabilities.Lorenzo Casalino, Christian Seitz, Julia Lederhofer, Yaroslav Tsybovsky, Ian A Wilson, Masaru Kanekiyo, Rommie E AmaroACS Central Science2022-12-08
A Reproducible and Tunable Synthetic Soil Microbial Community Provides New Insights into Microbial Ecology.Joanna Coker, Kateryna Zhalnina, Clarisse Marotz, Deepan Thiruppathy, Megan Tjuanta, Gavin D'Elia, Rodas Hailu, Talon Mahosky, Meagan Rowan, Trent R Northen, Karsten ZenglerMSystems2022-12-06
Multicenter Evaluation of the Cepheid Xpert GBS LB XC Test.Phyu M Thwe, Matthew L Faron, David T Pride, Amorina Cruz, Derek Gerstbrein, Karen A Nahmod, Lindsay Bigham, Xiaotang Du, Xixi Lu, Stephanie Moya, Ping RenJournal Of Clinical Microbiology2022-12-06
Vaccination induces HIV broadly neutralizing antibody precursors in humans.David J Leggat, Kristen W Cohen, Jordan R Willis, William J Fulp, Allan C deCamp, Oleksandr Kalyuzhniy, Christopher A Cottrell, Sergey Menis, Greg Finak, Lamar Ballweber-Fleming, Abhinaya Srikanth, Jason R Plyler, Torben Schiffner, Alessia Liguori, Farhad Rahaman, Angela Lombardo, Vincent Philiponis, Rachael E Whaley, Aaron Seese, Joshua Brand, Alexis M Ruppel, Wesley Hoyland, Nicole L Yates, LaTonya D Williams, Kelli Greene, Hongmei Gao, Celia R Mahoney, Martin M Corcoran, Alberto Cagigi, Alison Taylor, David M Brown, David R Ambrozak, Troy Sincomb, Xiaozhen Hu, Ryan Tingle, Erik Georgeson, Saman Eskandarzadeh, Nushin Alavi, Danny Lu, Tina-Marie Mullen, Michael Kubitz, Bettina Groschel, Janine Maenza, Orpheus Kolokythas, Nadia Khati, Jeffrey Bethony, Shane Crotty, Mario Roederer, Gunilla B Karlsson Hedestam, Georgia D Tomaras, David Montefiori, David Diemert, Richard A Koup, Dagna S Laufer, M Juliana McElrath, Adrian B McDermott, William R SchiefScience (New York, N.Y.)2022-12-02
Plant and fungal species interactions differ between aboveground and belowground habitats in mountain forests of eastern China.Teng Yang, Leho Tedersoo, Pamela S Soltis, Douglas E Soltis, Miao Sun, Yuying Ma, Yingying Ni, Xu Liu, Xiao Fu, Yu Shi, Han-Yang Lin, Yun-Peng Zhao, Chengxin Fu, Chuan-Chao Dai, Jack A Gilbert, Haiyan ChuScience China. Life Sciences2022-12-01
Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2022 Recommendations of the International Antiviral Society-USA Panel.Rajesh T Gandhi, Roger Bedimo, Jennifer F Hoy, Raphael J Landovitz, Davey M Smith, Ellen F Eaton, Clara Lehmann, Sandra A Springer, Paul E Sax, Melanie A Thompson, Constance A Benson, Susan P Buchbinder, Carlos Del Rio, Joseph J Eron, Huldrych F Günthard, Jean-Michel Molina, Donna M Jacobsen, Michael S SaagJAMA2022-12-01
A self-powered ingestible wireless biosensing system for real-time in situ monitoring of gastrointestinal tract metabolites.Ernesto De la Paz, Nikhil Harsha Maganti, Alexander Trifonov, Itthipon Jeerapan, Kuldeep Mahato, Lu Yin, Thitaporn Sonsa-Ard, Nicolas Ma, Won Jung, Ryan Burns, Amir Zarrinpar, Joseph Wang, Patrick P MercierNature Communications2022-12-01
A high-protein diet prevents weight regain.Amir ZarrinparNature Metabolism2022-12-01
ChiMera: an easy to use pipeline for bacterial genome based metabolic network reconstruction, evaluation and visualization.Gustavo Tamasco, Manish Kumar, Karsten Zengler, Rafael Silva-Rocha, Ricardo Roberto da SilvaBMC Bioinformatics2022-11-30
Clinical Outcomes of Omicron Variant (B.1.1.529) Infection in Children and Adolescents Hospitalized With COVID-19 in Brazil With Observational Data on the Efficacy of the Vaccines in Adolescents.Eduardo A Oliveira, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Ludmila R Silva, Daniella B Martelli, Clara C Pinhati, Hercílio Martelli-JúniorThe Pediatric Infectious Disease Journal2022-11-29
Culture-Independent Detection and Identification of Serovars.Michael A Matthias, Aristea A Lubar, Shalka S Lanka Acharige, Kira L Chaiboonma, Nicholas N Pilau, Alan S Marroquin, Dinesha Jayasundara, Suneth Agampodi, Joseph M VinetzMicrobiology Spectrum2022-11-29
The human pathobiont secreted protease Mfsap1 regulates cell dispersal and exacerbates skin inflammation.Joleen P Z Goh, Fiorella Ruchti, Si En Poh, Winston L C Koh, Kiat Yi Tan, Yan Ting Lim, Steven T G Thng, Radoslaw M Sobota, Shawn S Hoon, Chenxi Liu, Anthony J O'Donoghue, Salomé LeibundGut-Landmann, Hazel H Oon, Hao Li, Thomas L DawsonProceedings Of The National Academy Of Sciences Of The United States Of America2022-11-29
Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity.Justin P Shaffer, Louis-Félix Nothias, Luke R Thompson, Jon G Sanders, Rodolfo A Salido, Sneha P Couvillion, Asker D Brejnrod, Franck Lejzerowicz, Niina Haiminen, Shi Huang, Holly L Lutz, Qiyun Zhu, Cameron Martino, James T Morton, Smruthi Karthikeyan, Mélissa Nothias-Esposito, Kai Dührkop, Sebastian Böcker, Hyun Woo Kim, Alexander A Aksenov, Wout Bittremieux, Jeremiah J Minich, Clarisse Marotz, MacKenzie M Bryant, Karenina Sanders, Tara Schwartz, Greg Humphrey, Yoshiki Vásquez-Baeza, Anupriya Tripathi, Laxmi Parida, Anna Paola Carrieri, Kristen L Beck, Promi Das, Antonio González, Daniel McDonald, Joshua Ladau, Søren M Karst, Mads Albertsen, Gail Ackermann, Jeff DeReus, Torsten Thomas, Daniel Petras, Ashley Shade, James Stegen, Se Jin Song, Thomas O Metz, Austin D Swafford, Pieter C Dorrestein, Janet K Jansson, Jack A Gilbert, Rob Knight, Nature Microbiology2022-11-28
Representative oral microbiome data for the US population: the National Health and Nutrition Examination Survey.Emily Vogtmann, Anil K Chaturvedi, Martin J Blaser, Nicholas A Bokulich, J Gregory Caporaso, Maura L Gillison, Xing Hua, Autumn G Hullings, Rob Knight, Vaishnavi Purandare, Jianxin Shi, Yunhu Wan, Neal D Freedman, Christian C AbnetThe Lancet. Microbe2022-11-28
Characterization of SARS-CoV-2 antibodies in human milk from 21 women with confirmed COVID-19 infection.Lars Bode, Kerri Bertrand, Julia A Najera, Annalee Furst, Gordon Honerkamp-Smith, Adam D Shandling, Christina D Chambers, David Camerini, Joseph J CampoPediatric Research2022-11-25
Species Capable of Growth at Pressures Ranging Over 5 Orders of Magnitude, from the Surface of Mars (10 Pa) to Deep Oceans (10 Pa) in the Solar System.Kathleen M Miller, Flora Tang, Sixuan Li, Kelli K Mullane, Brontë R Shelton, Lam Bui, Douglas H Bartlett, Wayne L NicholsonAstrobiology2022-11-24
Urobiome changes differ based on OAB treatment in adult females.Thomas Halverson, Elizabeth R Mueller, Linda Brubaker, Alan J WolfeInternational Urogynecology Journal2022-11-24
The association between pre-existing asthma and reduced risk of death among children and adolescents hospitalized with COVID-19 in Brazil.Maria C L Oliveira, Enrico A Colosimo, Mariana A Vasconcelos, Hercílio Martelli-Júnior, Robert H Mak, Ludmila R Silva, Clara C Pinhati, Ana C Simões E Silva, Eduardo A OliveiraPediatric Pulmonology2022-11-23
Analyzing rare mutations in metagenomes assembled using long and accurate reads.Marcus W Fedarko, Mikhail Kolmogorov, Pavel A PevznerGenome Research2022-11-23
Composition and metabolic potential of microbiomes associated with mesopelagic animals from Monterey Canyon.Corinna Breusing, Karen J Osborn, Peter R Girguis, Aspen T ReeseISME Communications2022-11-22
Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species.Jeremiah J Minich, Andreas Härer, Joseph Vechinski, Benjamin W Frable, Zachary R Skelton, Emily Kunselman, Michael A Shane, Daniela S Perry, Antonio Gonzalez, Daniel McDonald, Rob Knight, Todd P Michael, Eric E AllenNature Communications2022-11-17
NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters.Tiago F Leão, Mingxun Wang, Ricardo da Silva, Alexey Gurevich, Anelize Bauermeister, Paulo Wender P Gomes, Asker Brejnrod, Evgenia Glukhov, Allegra T Aron, Joris J R Louwen, Hyun Woo Kim, Raphael Reher, Marli F Fiore, Justin J J van der Hooft, Lena Gerwick, William H Gerwick, Nuno Bandeira, Pieter C DorresteinPNAS Nexus2022-11-16
On the illusion of auxotrophy: met15Δ yeast cells can grow on inorganic sulfur, thanks to the previously uncharacterized homocysteine synthase Yll058w.S Branden Van Oss, Saurin Bipin Parikh, Nelson Castilho Coelho, Aaron Wacholder, Ivan Belashov, Sara Zdancewicz, Manuel Michaca, Jiazhen Xu, Yun Pyo Kang, Nathan P Ward, Sang Jun Yoon, Katherine M McCourt, Jake McKee, Trey Ideker, Andrew P VanDemark, Gina M DeNicola, Anne-Ruxandra CarvunisThe Journal Of Biological Chemistry2022-11-13
Correlation between Serum Steroid Hormones and Gut Microbiota in Patients with Alcohol-Associated Liver Disease.Bei Gao, Yixin Zhu, Weishou Shen, Peter Stärkel, Bernd SchnablMetabolites2022-11-13
A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice.Reem Abdel-Haq, Johannes C M Schlachetzki, Joseph C Boktor, Thaisa M Cantu-Jungles, Taren Thron, Mengying Zhang, John W Bostick, Tahmineh Khazaei, Sujatha Chilakala, Livia H Morais, Greg Humphrey, Ali Keshavarzian, Jonathan E Katz, Matthew Thomson, Rob Knight, Viviana Gradinaru, Bruce R Hamaker, Christopher K Glass, Sarkis K MazmanianELife2022-11-08
Spacer Matters: All-Peptide-Based Ligand for Promoting Interfacial Proteolysis and Plasmonic Coupling.Zhicheng Jin, Chuxuan Ling, Yi Li, Jiajing Zhou, Ke Li, Wonjun Yim, Justin Yeung, Yu-Ci Chang, Tengyu He, Yong Cheng, Pavla Fajtová, Maurice Retout, Anthony J O'Donoghue, Jesse V JokerstNano Letters2022-11-08
RISE FOR HEALTH: Rationale and protocol for a prospective cohort study of bladder health in women.Ariana L Smith, Kyle Rudser, Bernard L Harlow, Gerald McGwin, Julia Barthold, Sonya S Brady, Linda Brubaker, Shayna D Cunningham, James W Griffith, Kim Kenton, Heather Klusaritz, Cora E Lewis, Emily S Lukacz, Julia Maki, Alayne D Markland, Elizabeth R Mueller, Diane K Newman, Jesse Nodora, Leslie M Rickey, Todd Rockwood, Melissa Simon, Jean F Wyman, Siobhan Sutcliffe, Neurourology And Urodynamics2022-11-02
Mucosal and Systemic Responses to Severe Acute Respiratory Syndrome Coronavirus 2 Vaccination Determined by Severity of Primary Infection.Mohammad M Sajadi, Amber Myers, James Logue, Saman Saadat, Narjes Shokatpour, James Quinn, Michelle Newman, Meagan Deming, Zahra Rikhtegaran Tehrani, Laurence S Magder, Maryam Karimi, Abdolrahim Abbasi, Mike Shlyak, Lauren Baracco, Matthew B Frieman, Shane Crotty, Anthony D HarrisMSphere2022-11-02
Coordination of CcpA and CodY Regulators in Staphylococcus aureus USA300 Strains.Saugat Poudel, Ying Hefner, Richard Szubin, Anand Sastry, Ye Gao, Victor Nizet, Bernhard O PalssonMSystems2022-11-02
Pan-Genome Analysis of Transcriptional Regulation in Six Salmonella enterica Serovar Typhimurium Strains Reveals Their Different Regulatory Structures.Yuan Yuan, Yara Seif, Kevin Rychel, Reo Yoo, Siddharth Chauhan, Saugat Poudel, Tahani Al-Bulushi, Bernhard O Palsson, Anand V SastryMSystems2022-11-01
synDNA-a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing.Livia S Zaramela, Megan Tjuanta, Oriane Moyne, Maxwell Neal, Karsten ZenglerMSystems2022-11-01
Sex, puberty, and the gut microbiome.Laura Sisk-Hackworth, Scott T Kelley, Varykina G ThackrayReproduction (Cambridge, England)2022-11-01
Drug transporters OAT1 and OAT3 have specific effects on multiple organs and gut microbiome as revealed by contextualized metabolic network reconstructions.Neema Jamshidi, Sanjay K NigamScientific Reports2022-10-31
The rapidly evolving monkeypox epidemic: A call to action to leave no one behind.Steffanie A Strathdee, Davey M Smith, Megan Halbrook, Placide Mbala-Kingebeni, Shira Abeles, Francesca Torriani, Anne RimoinPLoS Medicine2022-10-31
Sarcopenia-related gut microbial changes are associated with the risk of complications in people with cirrhosis.Pei-Chang Lee, Kuei-Chuan Lee, Tsung-Chieh Yang, Hsiao-Sheng Lu, Tsung-Yi Cheng, Yu-Jen Chen, Jen-Jie Chiou, Chi-Wei Huang, Ueng-Cheng Yang, Elise Chia-Hui Tan, Shih-Hsuan Chou, Yu-Lun Kuo, Bernd Schnabl, Yi-Hsiang Huang, Ming-Chih HouJHEP Reports : Innovation In Hepatology2022-10-29
Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq.Sara E Vazquez, Sabrina A Mann, Aaron Bodansky, Andrew F Kung, Zoe Quandt, Elise M N Ferré, Nils Landegren, Daniel Eriksson, Paul Bastard, Shen-Ying Zhang, Jamin Liu, Anthea Mitchell, Irina Proekt, David Yu, Caleigh Mandel-Brehm, Chung-Yu Wang, Brenda Miao, Gavin Sowa, Kelsey Zorn, Alice Y Chan, Veronica M Tagi, Chisato Shimizu, Adriana Tremoulet, Kara Lynch, Michael R Wilson, Olle Kämpe, Kerry Dobbs, Ottavia M Delmonte, Rosa Bacchetta, Luigi D Notarangelo, Jane C Burns, Jean-Laurent Casanova, Michail S Lionakis, Troy R Torgerson, Mark S Anderson, Joseph L DeRisiELife2022-10-27
The Vi Capsular Polysaccharide of Salmonella Typhi Promotes Macrophage Phagocytosis by Binding the Human C-Type Lectin DC-SIGN.Lillian F Zhang, Bernd Lepenies, Sayuri Nakamae, Briana M Young, Renato L Santos, Manuela Raffatellu, Brian A Cobb, Hirotaka Hiyoshi, Andreas J BäumlerMBio2022-10-26
Emergence of SARS-CoV-2 escape mutations during Bamlanivimab therapy in a phase II randomized clinical trial.Manish C Choudhary, Kara W Chew, Rinki Deo, James P Flynn, James Regan, Charles R Crain, Carlee Moser, Michael D Hughes, Justin Ritz, Ruy M Ribeiro, Ruian Ke, Joan A Dragavon, Arzhang Cyrus Javan, Ajay Nirula, Paul Klekotka, Alexander L Greninger, Courtney V Fletcher, Eric S Daar, David A Wohl, Joseph J Eron, Judith S Currier, Urvi M Parikh, Scott F Sieg, Alan S Perelson, Robert W Coombs, Davey M Smith, Jonathan Z Li, Nature Microbiology2022-10-26
Live Biotherapeutic Products as Cancer Treatments.Arianna Brevi, Amir ZarrinparCancer Research2022-10-24
Abrogation of neutrophil inflammatory pathways and potential reduction of neutrophil-related factors in COVID-19 by intravenous immunoglobulin.Jorge Adrian Masso-Silva, George Sakoulas, Jarod Olay, Victoria Groysberg, Matthew Geriak, Victor Nizet, Laura E Crotty Alexander, Angela MeierFrontiers In Immunology2022-10-20
Lessons for Understanding Central Nervous System HIV Reservoirs from the Last Gift Program.Patricia K Riggs, Antoine Chaillon, Guochun Jiang, Scott L Letendre, Yuyang Tang, Jeff Taylor, Andrew Kaytes, Davey M Smith, Karine Dubé, Sara GianellaCurrent HIV/AIDS Reports2022-10-19
Anthrax Meningoencephalitis and Intracranial Hemorrhage.Nicholas Caffes, Katherine Hendricks, John S Bradley, Nancy A Twenhafel, J Marc SimardClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2022-10-17
Systematic Review of Hospital Treatment Outcomes for Naturally Acquired and Bioterrorism-Related Anthrax, 1880-2018.Marissa K Person, Rachel Cook, John S Bradley, Nathaniel Hupert, William A Bower, Katherine HendricksClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2022-10-17
Inexpensive, Accurate, and Stable Method to Quantitate Blood Alanine Aminotransferase (ALT) Levels.Phillipp Hartmann, Bernd SchnablMethods And Protocols2022-10-14
Experimental Evolution Reveals Unifying Systems-Level Adaptations but Diversity in Driving Genotypes.Erol S Kavvas, Christopher P Long, Anand Sastry, Saugat Poudel, Maciek R Antoniewicz, Yang Ding, Elsayed T Mohamed, Richard Szubin, Jonathan M Monk, Adam M Feist, Bernhard O PalssonMSystems2022-10-13
Illuminating the dark metabolome of Pseudo-nitzschia-microbiome associations.Irina Koester, Zachary A Quinlan, Louis-Félix Nothias, Margot E White, Ariel Rabines, Daniel Petras, John K Brunson, Kai Dührkop, Marcus Ludwig, Sebastian Böcker, Farooq Azam, Andrew E Allen, Pieter C Dorrestein, Lihini I AluwihareEnvironmental Microbiology2022-10-12
Allergen Content and Protease Activity in Milk Feeds from Mothers of Preterm Infants.Kathleen Luskin, Diba Mortazavi, Sherry Bai-Tong, Kerri Bertrand, Christina Chambers, Keriann Schulkers-Escalante, Alla Ahmad, Stephanie Luedtke, Anthony J O'Donoghue, Majid Ghassemian, Bob Geng, Sandra L Leibel, Sydney A LeibelBreastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine2022-10-12
Transcriptomic profiling of sporadic Alzheimer's disease patients.Andrew B Caldwell, Balaji G Anantharaman, Srinivasan Ramachandran, Phuong Nguyen, Qing Liu, Ivy Trinh, Douglas R Galasko, Paula A Desplats, Steven L Wagner, Shankar SubramaniamMolecular Brain2022-10-12
OAT, OATP, and MRP Drug Transporters and the Remote Sensing and Signaling Theory.Sanjay K Nigam, Jeffry C GranadosAnnual Review Of Pharmacology And Toxicology2022-10-07
Regulatory T-cells and GARP expression are decreased in exercise-associated chikungunya viral arthritis flares.John E Dobbs, Sarah R Tritsch, Liliana Encinales, Andres Cadena, Karol Suchowiecki, Gary Simon, Christopher Mores, Silvana Insignares, Vierys Patricia Villamil Orozco, Mirna Ospino, Lil Avendano Echavez, Carlos Andres Herrera Gomez, Yerlenis Galvis Crespo, Richard Amdur, Alberto David Cabana Jimenez, Carlos Alberto Perez Hernandez, Jennifer Carolina Martinez Zapata, Alfonso Sucerquia Hernandez, Paula Bruges Silvera, Wendy Rosales, Evelyn Mendoza, Estefanie Osorio-Llanes, Jairo Castellar, Dennys Jimenez, Dan M Cooper, Gary S Firestein, Karen Martins, Aileen Y ChangFrontiers In Immunology2022-10-07
Electrochemical potential enables dormant spores to integrate environmental signals.Kaito Kikuchi, Leticia Galera-Laporta, Colleen Weatherwax, Jamie Y Lam, Eun Chae Moon, Emmanuel A Theodorakis, Jordi Garcia-Ojalvo, Gürol M SüelScience (New York, N.Y.)2022-10-06
Opposing roles of hepatic stellate cell subpopulations in hepatocarcinogenesis.Aveline Filliol, Yoshinobu Saito, Ajay Nair, Dianne H Dapito, Le-Xing Yu, Aashreya Ravichandra, Sonakshi Bhattacharjee, Silvia Affo, Naoto Fujiwara, Hua Su, Qiuyan Sun, Thomas M Savage, John R Wilson-Kanamori, Jorge M Caviglia, LiKang Chin, Dongning Chen, Xiaobo Wang, Stefano Caruso, Jin Ku Kang, Amit Dipak Amin, Sebastian Wallace, Ross Dobie, Deqi Yin, Oscar M Rodriguez-Fiallos, Chuan Yin, Adam Mehal, Benjamin Izar, Richard A Friedman, Rebecca G Wells, Utpal B Pajvani, Yujin Hoshida, Helen E Remotti, Nicholas Arpaia, Jessica Zucman-Rossi, Michael Karin, Neil C Henderson, Ira Tabas, Robert F SchwabeNature2022-10-05
AHR is a master regulator of diverse pathways in endogenous metabolism.Jeffry C Granados, Kian Falah, Imhoi Koo, Ethan W Morgan, Gary H Perdew, Andrew D Patterson, Neema Jamshidi, Sanjay K NigamScientific Reports2022-10-05
Age-dependent aggregation of ribosomal RNA-binding proteins links deterioration in chromatin stability with challenges to proteostasis.Julie Paxman, Zhen Zhou, Richard O'Laughlin, Yuting Liu, Yang Li, Wanying Tian, Hetian Su, Yanfei Jiang, Shayna E Holness, Elizabeth Stasiowski, Lev S Tsimring, Lorraine Pillus, Jeff Hasty, Nan HaoELife2022-10-04
A pals-25 gain-of-function allele triggers systemic resistance against natural pathogens of C. elegans.Spencer S Gang, Manish Grover, Kirthi C Reddy, Deevya Raman, Ya-Ting Chang, Damian C Ekiert, Michalis Barkoulas, Emily R TroemelPLoS Genetics2022-10-03
#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol.Abigail Dommer, Lorenzo Casalino, Fiona Kearns, Mia Rosenfeld, Nicholas Wauer, Surl-Hee Ahn, John Russo, Sofia Oliveira, Clare Morris, Anthony Bogetti, Anda Trifan, Alexander Brace, Terra Sztain, Austin Clyde, Heng Ma, Chakra Chennubhotla, Hyungro Lee, Matteo Turilli, Syma Khalid, Teresa Tamayo-Mendoza, Matthew Welborn, Anders Christensen, Daniel Ga Smith, Zhuoran Qiao, Sai K Sirumalla, Michael O'Connor, Frederick Manby, Anima Anandkumar, David Hardy, James Phillips, Abraham Stern, Josh Romero, David Clark, Mitchell Dorrell, Tom Maiden, Lei Huang, John McCalpin, Christopher Woods, Alan Gray, Matt Williams, Bryan Barker, Harinda Rajapaksha, Richard Pitts, Tom Gibbs, John Stone, Daniel M Zuckerman, Adrian J Mulholland, Thomas Miller, Shantenu Jha, Arvind Ramanathan, Lillian Chong, Rommie E AmaroThe International Journal Of High Performance Computing Applications2022-10-02
Transfer of antibiotics and their metabolites in human milk: implications for infant health and microbiota.Sydney P Thomas, Erce Denizer, Simone Zuffa, Brookie M Best, Lars Bode, Christina D Chambers, Pieter C Dorrestein, George Y Liu, Jeremiah D Momper, Victor Nizet, Shirley M Tsunoda, Adriana H TremouletPharmacotherapy2022-10-01
Targeted protein S-nitrosylation of ACE2 inhibits SARS-CoV-2 infection.Chang-Ki Oh, Tomohiro Nakamura, Nathan Beutler, Xu Zhang, Juan Piña-Crespo, Maria Talantova, Swagata Ghatak, Dorit Trudler, Lauren N Carnevale, Scott R McKercher, Malina A Bakowski, Jolene K Diedrich, Amanda J Roberts, Ashley K Woods, Victor Chi, Anil K Gupta, Mia A Rosenfeld, Fiona L Kearns, Lorenzo Casalino, Namir Shaabani, Hejun Liu, Ian A Wilson, Rommie E Amaro, Dennis R Burton, John R Yates, Cyrus Becker, Thomas F Rogers, Arnab K Chatterjee, Stuart A LiptonNature Chemical Biology2022-09-29
A Trait-Based Approach to Predicting Viral Host-Range Evolvability.Hannah M Strobel, Elizabeth C Stuart, Justin R MeyerAnnual Review Of Virology2022-09-29
The gastrointestinal and microbiome impact of a resistant starch blend from potato, banana, and apple fibers: A randomized clinical trial using smart caps.Douglas Hanes, Brent Nowinski, Joseph J Lamb, Ilona A Larson, Daniel McDonald, Rob Knight, Se Jin Song, Noelle PatnoFrontiers In Nutrition2022-09-29
Organic Anion Transporters (OAT) and Other SLC22 Transporters in Progression of Renal Cell Carcinoma.Thomas C Whisenant, Sanjay K NigamCancers2022-09-29
Vaccine Effectiveness against SARS-CoV-2 Variants in Adolescents from 15 to 90 Days after Second Dose: A Population-Based Test-Negative Case-Control Study.Eduardo A Oliveira, Maria Christina L Oliveira, Enrico A Colosimo, Ana Cristina Simões E Silva, Robert H Mak, Mariana A Vasconcelos, Ludmila R Silva, Daniella B Martelli, Clara C Pinhati, Hercílio Martelli-JúniorThe Journal Of Pediatrics2022-09-29
Evolution of the ancestral mammalian karyotype and syntenic regions.Joana Damas, Marco Corbo, Jaebum Kim, Jason Turner-Maier, Marta Farré, Denis M Larkin, Oliver A Ryder, Cynthia Steiner, Marlys L Houck, Shaune Hall, Lily Shiue, Stephen Thomas, Thomas Swale, Mark Daly, Jonas Korlach, Marcela Uliano-Silva, Camila J Mazzoni, Bruce W Birren, Diane P Genereux, Jeremy Johnson, Kerstin Lindblad-Toh, Elinor K Karlsson, Martin T Nweeia, Rebecca N Johnson, , Harris A LewinProceedings Of The National Academy Of Sciences Of The United States Of America2022-09-26
Asymptomatic or symptomatic SARS-CoV-2 infection plus vaccination confers increased adaptive immunity to variants of concern.Peifang Sun, Irene Ramos, Camila H Coelho, Alba Grifoni, Corey A Balinsky, Sindhu Vangeti, Alison Tarke, Nathaniel I Bloom, Vihasi Jani, Silvia J Jakubski, David A Boulifard, Elizabeth Cooper, Carl W Goforth, Jan Marayag, Amethyst Marrone, Edgar Nunez, Lindsey White, Chad K Porter, Victor A Sugiharto, Megan Schilling, Avinash S Mahajan, Charmagne Beckett, Alessandro Sette, Stuart C Sealfon, Shane Crotty, Andrew G LetiziaIScience2022-09-23
Nanoparticle-modified microrobots for in vivo antibiotic delivery to treat acute bacterial pneumonia.Fangyu Zhang, Jia Zhuang, Zhengxing Li, Hua Gong, Berta Esteban-Fernández de Ávila, Yaou Duan, Qiangzhe Zhang, Jiarong Zhou, Lu Yin, Emil Karshalev, Weiwei Gao, Victor Nizet, Ronnie H Fang, Liangfang Zhang, Joseph WangNature Materials2022-09-22
Candida albicans-specific Th17 cell-mediated response contributes to alcohol-associated liver disease.Suling Zeng, Elisa Rosati, Carina Saggau, Berith Messner, Huikuan Chu, Yi Duan, Phillipp Hartmann, Yanhan Wang, Shengyun Ma, Wendy Jia Men Huang, Jihyung Lee, Sung Min Lee, Raquel Carvalho-Gontijo, Vivian Zhang, Joseph P Hoffmann, Jay K Kolls, Eyal Raz, David A Brenner, Tatiana Kisseleva, Salomé LeibundGut-Landmann, Petra Bacher, Peter Stärkel, Bernd SchnablCell Host & Microbe2022-09-22
Long-primed germinal centres with enduring affinity maturation and clonal migration.Jeong Hyun Lee, Henry J Sutton, Christopher A Cottrell, Ivy Phung, Gabriel Ozorowski, Leigh M Sewall, Rebecca Nedellec, Catherine Nakao, Murillo Silva, Sara T Richey, Jonathan L Torre, Wen-Hsin Lee, Erik Georgeson, Michael Kubitz, Sam Hodges, Tina-Marie Mullen, Yumiko Adachi, Kimberly M Cirelli, Amitinder Kaur, Carolina Allers, Marissa Fahlberg, Brooke F Grasperge, Jason P Dufour, Faith Schiro, Pyone P Aye, Oleksandr Kalyuzhniy, Alessia Liguori, Diane G Carnathan, Guido Silvestri, Xiaoying Shen, David C Montefiori, Ronald S Veazey, Andrew B Ward, Lars Hangartner, Dennis R Burton, Darrell J Irvine, William R Schief, Shane CrottyNature2022-09-21
Actinopolymorphols E and F, pyrazine alkaloids from a marine sediment-derived bacterium Streptomyces sp.Sohee Kim, Prima F Hillman, Ji Young Lee, Juri Lee, Jihye Lee, Sun-Shin Cha, Dong-Chan Oh, Sang-Jip Nam, William FenicalThe Journal Of Antibiotics2022-09-15
Phase 2 Safety and Antiviral Activity of SAB-185, a Novel Polyclonal Antibody Therapy for Nonhospitalized Adults With COVID-19.Babafemi O Taiwo, Kara W Chew, Carlee Moser, David Alain Wohl, Eric S Daar, Jonathan Z Li, Alexander L Greninger, Christoph Bausch, Thomas Luke, Keila Hoover, Gene Neytman, Mark J Giganti, Maxine Olefsky, Arzhang Cyrus Javan, Courtney V Fletcher, Joseph J Eron, Judith S Currier, Michael D Hughes, Davey M Smith, The Journal Of Infectious Diseases2022-09-14
Strengthening of enterococcal biofilms by Esp.Lindsey Spiegelman, Adrian Bahn-Suh, Elizabeth T Montaño, Ling Zhang, Greg L Hura, Kathryn A Patras, Amit Kumar, F Akif Tezcan, Victor Nizet, Susan E Tsutakawa, Partho GhoshPLoS Pathogens2022-09-14
The Transcription Factor YY-1 Is an Essential Regulator of T Follicular Helper Cell Differentiation.Simon Bélanger, Sonya Haupt, Brian L Freeman, Adam J Getzler, Huitian Diao, Matthew E Pipkin, Shane CrottyJournal Of Immunology (Baltimore, Md. : 1950)2022-09-12
Siderophore Immunization Restricted Colonization of Adherent-Invasive Escherichia coli and Ameliorated Experimental Colitis.Romana R Gerner, Suzana Hossain, Artur Sargun, Kareem Siada, Grant J Norton, Tengfei Zheng, Wilma Neumann, Sean-Paul Nuccio, Elizabeth M Nolan, Manuela RaffatelluMBio2022-09-12
Development of host immune response to bacteriophage in a lung transplant recipient on adjunctive phage therapy for a multidrug resistant pneumonia.Jennifer M Dan, Susan M Lehman, Rita Al-Kolla, Samuel Penziner, Kamyar Afshar, Gordon Yung, Eugene Golts, Nancy Law, Cathy Logan, Zsuzsanna Kovach, Gill Mearns, Robert T Schooley, Saima Aslam, Shane CrottyThe Journal Of Infectious Diseases2022-09-09
Assembling a Reference Phylogenomic Tree of Bacteria and Archaea by Summarizing Many Gene Phylogenies.Qiyun Zhu, Siavash MirarabMethods In Molecular Biology (Clifton, N.J.)2022-09-09
Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References.Daniel Hakim, Stephen Wandro, Karsten Zengler, Livia S Zaramela, Brent Nowinski, Austin Swafford, Qiyun Zhu, Se Jin Song, Antonio Gonzalez, Daniel McDonald, Rob KnightMSystems2022-09-08
A single-administration therapeutic interfering particle reduces SARS-CoV-2 viral shedding and pathogenesis in hamsters.Sonali Chaturvedi, Nathan Beutler, Gustavo Vasen, Michael Pablo, Xinyue Chen, Giuliana Calia, Lauren Buie, Robert Rodick, Davey Smith, Thomas Rogers, Leor S WeinbergerProceedings Of The National Academy Of Sciences Of The United States Of America2022-09-08
Heterogeneous multimeric metabolite ion species observed in LC-MS based metabolomics data sets.Yasin El Abiead, Christoph Bueschl, Lisa Panzenboeck, Mingxun Wang, Maria Doppler, Bernhard Seidl, Jürgen Zanghellini, Pieter C Dorrestein, Gunda KoellenspergerAnalytica Chimica Acta2022-09-08
Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa.Akanksha Rajput, Hannah Tsunemoto, Anand V Sastry, Richard Szubin, Kevin Rychel, Siddharth M Chauhan, Joe Pogliano, Bernhard O PalssonNucleic Acids Research2022-09-06
Research gaps and opportunities in precision nutrition: an NIH workshop report.Bruce Y Lee, José M Ordovás, Elizabeth J Parks, Cheryl A M Anderson, Albert-László Barabási, Steven K Clinton, Kayla de la Haye, Valerie B Duffy, Paul W Franks, Elizabeth M Ginexi, Kristian J Hammond, Erin C Hanlon, Michael Hittle, Emily Ho, Abigail L Horn, Richard S Isaacson, Patricia L Mabry, Susan Malone, Corby K Martin, Josiemer Mattei, Simin Nikbin Meydani, Lorene M Nelson, Marian L Neuhouser, Brendan Parent, Nicolaas P Pronk, Helen M Roche, Suchi Saria, Frank A J L Scheer, Eran Segal, Mary Ann Sevick, Tim D Spector, Linda B Van Horn, Krista A Varady, Venkata Saroja Voruganti, Marie F MartinezThe American Journal Of Clinical Nutrition2022-09-02
-Acetyl Migration within the Sialic Acid Side Chain: A Mechanistic Study Using the Nanoreactor.Lisa Oh, Yang Ji, Wanqing Li, Ajit Varki, Xi Chen, Lee-Ping WangBiochemistry2022-09-02
Limited microbiome differences in captive and semi-wild primate populations consuming similar diets.Sahana Kuthyar, Karli Watson, Shi Huang, Lauren J N Brent, Michael Platt, Julie Horvath, Janis Gonzalez-Martinez, Melween Martínez, Filipa Godoy-Vitorino, Rob Knight, Maria Gloria Dominguez-Bello, Katherine R AmatoFEMS Microbiology Ecology2022-09-01
Hyponatremia in Patients With Multisystem Inflammatory Syndrome in Children.Tatyana Mills, Aditi Trivedi, Adriana H Tremoulet, Daniel Hershey, Jane C BurnsThe Pediatric Infectious Disease Journal2022-09-01
Proof of Concept for the Detection with Custom Printed Electrodes of Enterobactin as a Marker of .Alexandra Canciu, Andreea Cernat, Mihaela Tertis, Silvia Botarca, Madalina Adriana Bordea, Joseph Wang, Cecilia CristeaInternational Journal Of Molecular Sciences2022-08-31
SARS-CoV-2 Omicron Variant of Concern: Everything You Wanted to Know about Omicron but Were Afraid to Ask.Dong Hoon Shin, Davey M Smith, Jun Yong ChoiYonsei Medical Journal2022-08-31
Introducing the "Microbiomes and Social Equity" Special Collection.Sue Ishaq, Jack GilbertMSystems2022-08-29
Location-specific signatures of Crohn's disease at a multi-omics scale.Carlos G Gonzalez, Robert H Mills, Qiyun Zhu, Consuelo Sauceda, Rob Knight, Parambir S Dulai, David J GonzalezMicrobiome2022-08-24
Multi-omics analyses of airway host-microbe interactions in chronic obstructive pulmonary disease identify potential therapeutic interventions.Zhengzheng Yan, Boxuan Chen, Yuqiong Yang, Xinzhu Yi, Mingyuan Wei, Gertrude Ecklu-Mensah, Mary M Buschmann, Haiyue Liu, Jingyuan Gao, Weijie Liang, Xiaomin Liu, Junhao Yang, Wei Ma, Zhenyu Liang, Fengyan Wang, Dandan Chen, Lingwei Wang, Weijuan Shi, Martin R Stampfli, Pan Li, Shenhai Gong, Xia Chen, Wensheng Shu, Emad M El-Omar, Jack A Gilbert, Martin J Blaser, Hongwei Zhou, Rongchang Chen, Zhang WangNature Microbiology2022-08-22
Antiviral and clinical activity of bamlanivimab in a randomized trial of non-hospitalized adults with COVID-19.Kara W Chew, Carlee Moser, Eric S Daar, David A Wohl, Jonathan Z Li, Robert W Coombs, Justin Ritz, Mark Giganti, Arzhang Cyrus Javan, Yijia Li, Manish C Choudhary, Rinki Deo, Carlos Malvestutto, Paul Klekotka, Karen Price, Ajay Nirula, William Fischer, Veenu Bala, Ruy M Ribeiro, Alan S Perelson, Courtney V Fletcher, Joseph J Eron, Judith S Currier, , Michael D Hughes, Davey M SmithNature Communications2022-08-22
SARS-CoV-2 and MERS-CoV Spike Protein Binding Studies Support Stable Mimic of Bound 9--Acetylated Sialic Acids.Lisa Oh, Ajit Varki, Xi Chen, Lee-Ping WangMolecules (Basel, Switzerland)2022-08-20
Structural Basis of Stereospecific Vanadium-Dependent Haloperoxidase Family Enzymes in Napyradiomycin Biosynthesis.Percival Yang-Ting Chen, Sanjoy Adak, Jonathan R Chekan, David K Liscombe, Akimasa Miyanaga, Peter Bernhardt, Stefan Diethelm, Elisha N Fielding, Jonathan H George, Zachary D Miles, Lauren A M Murray, Taylor S Steele, Jaclyn M Winter, Joseph P Noel, Bradley S MooreBiochemistry2022-08-19
Discovery, classification, evolution and diversity of Siglecs.Takashi Angata, Ajit VarkiMolecular Aspects Of Medicine2022-08-18
Interdependence of Sebaceous Lipids and the Microbiome in Atopic Dermatitis.Samia Almoughrabie, Richard L GalloThe Journal Of Investigative Dermatology2022-08-16
Comparison of the APAS Independence Automated Plate Reader System with the Manual Standard of Care for Processing Urine Culture Specimens.Megan Chiu, Peiting Kuo, Khrissa Lecrone, Andrew Garcia, Ruohui Chen, Natalie E Quach, Xin M Tu, David T PrideMicrobiology Spectrum2022-08-16
A Self-Immolative Fluorescent Probe for Selective Detection of SARS-CoV-2 Main Protease.Ming Xu, Jiajing Zhou, Yong Cheng, Zhicheng Jin, Alex E Clark, Tengyu He, Wonjun Yim, Yi Li, Yu-Ci Chang, Zhuohong Wu, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Michael D Todd, Jesse V JokerstAnalytical Chemistry2022-08-16
Bicarbonate Effects on Antibacterial Immunity and Mucus Glycobiology in the Cystic Fibrosis Lung: A Review With Selected Experimental Observations.Ruth Siew, Tzung-Lin Ou, Samira Dahesh, Kathryn Akong, Victor NizetInfectious Microbes & Diseases2022-08-16
Design and validation of HIV peptide pools for detection of HIV-specific CD4+ and CD8+ T cells.Rita Al-Kolla, Alba Grifoni, Shane Crotty, Alessandro Sette, Sara Gianella, Jennifer DanPloS One2022-08-16
Nasal and Plasma Severe Acute Respiratory Syndrome Coronavirus 2 RNA Levels Are Associated With Timing of Symptom Resolution in the ACTIV-2 Trial of Nonhospitalized Adults With Coronavirus Disease 2019.Yijia Li, Linda J Harrison, Kara W Chew, Judy S Currier, David A Wohl, Eric S Daar, Teresa H Evering, Ryan Wu, Mark Giganti, Justin Ritz, Arzhang Cyrus Javan, Robert W Coombs, Carlee Moser, Michael D Hughes, Joseph J Eron, Davey M Smith, Jonathan Z LiClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2022-08-15
Structure-Based Identification of Naphthoquinones and Derivatives as Novel Inhibitors of Main Protease M and Papain-like Protease PL of SARS-CoV-2.Lucianna H Santos, Thales Kronenberger, Renata G Almeida, Elany B Silva, Rafael E O Rocha, Joyce C Oliveira, Luiza V Barreto, Danielle Skinner, Pavla Fajtová, Miriam A Giardini, Brendon Woodworth, Conner Bardine, André L Lourenço, Charles S Craik, Antti Poso, Larissa M Podust, James H McKerrow, Jair L Siqueira-Neto, Anthony J O'Donoghue, Eufrânio N da Silva Júnior, Rafaela S FerreiraJournal Of Chemical Information And Modeling2022-08-12
Author Correction: Cross-reactive immunity against the SARS-CoV-2 Omicron variant is low in pediatric patients with prior COVID-19 or MIS-C.Juanjie Tang, Tanya Novak, Julian Hecker, Gabrielle Grubbs, Fatema Tuz Zahra, Lorenza Bellusci, Sara Pourhashemi, Janet Chou, Kristin Moffitt, Natasha B Halasa, Stephanie P Schwartz, Tracie C Walker, Keiko M Tarquinio, Matt S Zinter, Mary A Staat, Shira J Gertz, Natalie Z Cvijanovich, Jennifer E Schuster, Laura L Loftis, Bria M Coates, Elizabeth H Mack, Katherine Irby, Julie C Fitzgerald, Courtney M Rowan, Michele Kong, Heidi R Flori, Aline B Maddux, Steven L Shein, Hillary Crandall, Janet R Hume, Charlotte V Hobbs, Adriana H Tremoulet, Chisato Shimizu, Jane C Burns, Sabrina R Chen, Hye Kyung Moon, Christoph Lange, Adrienne G Randolph, Surender KhuranaNature Communications2022-08-12
The Microbiome and Mental Health Across the Lifespan.Faith Dickerson, Amanda Hazel Dilmore, Filipa Godoy-Vitorino, Tanya T Nguyen, Martin Paulus, Adrian A Pinto-Tomas, Cristofer Moya-Roman, Ibrahim Zuniga-Chaves, Emily G Severance, Dilip V JesteCurrent Topics In Behavioral Neurosciences2022-08-11
Broadly neutralizing antibodies to SARS-related viruses can be readily induced in rhesus macaques.Wan-Ting He, Meng Yuan, Sean Callaghan, Rami Musharrafieh, Ge Song, Murillo Silva, Nathan Beutler, Wen-Hsin Lee, Peter Yong, Jonathan L Torres, Mariane Melo, Panpan Zhou, Fangzhu Zhao, Xueyong Zhu, Linghang Peng, Deli Huang, Fabio Anzanello, James Ricketts, Mara Parren, Elijah Garcia, Melissa Ferguson, William Rinaldi, Stephen A Rawlings, David Nemazee, Davey M Smith, Bryan Briney, Yana Safonova, Thomas F Rogers, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Shane Crotty, Darrell J Irvine, Andrew B Ward, Ian A Wilson, Dennis R Burton, Raiees AndrabiScience Translational Medicine2022-08-10
Acetate reprograms gut microbiota during alcohol consumption.Cameron Martino, Livia S Zaramela, Bei Gao, Mallory Embree, Janna Tarasova, Seth J Parker, Yanhan Wang, Huikuan Chu, Peng Chen, Kuei-Chuan Lee, Daniela Domingos Galzerani, Jivani M Gengatharan, Asama Lekbua, Maxwell Neal, Rob Knight, Hidekazu Tsukamoto, Christian M Metallo, Bernd Schnabl, Karsten ZenglerNature Communications2022-08-08
Native metabolomics identifies the rivulariapeptolide family of protease inhibitors.Raphael Reher, Allegra T Aron, Pavla Fajtová, Paolo Stincone, Berenike Wagner, Alicia I Pérez-Lorente, Chenxi Liu, Ido Y Ben Shalom, Wout Bittremieux, Mingxun Wang, Kyowon Jeong, Marie L Matos-Hernandez, Kelsey L Alexander, Eduardo J Caro-Diaz, C Benjamin Naman, J H William Scanlan, Phil M M Hochban, Wibke E Diederich, Carlos Molina-Santiago, Diego Romero, Khaled A Selim, Peter Sass, Heike Brötz-Oesterhelt, Chambers C Hughes, Pieter C Dorrestein, Anthony J O'Donoghue, William H Gerwick, Daniel PetrasNature Communications2022-08-08
Breathing and tilting: mesoscale simulations illuminate influenza glycoprotein vulnerabilities.Lorenzo Casalino, Christian Seitz, Julia Lederhofer, Yaroslav Tsybovsky, Ian A Wilson, Masaru Kanekiyo, Rommie E AmaroBioRxiv : The Preprint Server For Biology2022-08-07
Intestinal transgene delivery with native E. coli chassis allows persistent physiological changes.Baylee J Russell, Steven D Brown, Nicole Siguenza, Irene Mai, Anand R Saran, Amulya Lingaraju, Erica S Maissy, Ana C Dantas Machado, Antonio F M Pinto, Concepcion Sanchez, Leigh-Ana Rossitto, Yukiko Miyamoto, R Alexander Richter, Samuel B Ho, Lars Eckmann, Jeff Hasty, David J Gonzalez, Alan Saghatelian, Rob Knight, Amir ZarrinparCell2022-08-04
Architecture and self-assembly of the jumbo bacteriophage nuclear shell.Thomas G Laughlin, Amar Deep, Amy M Prichard, Christian Seitz, Yajie Gu, Eray Enustun, Sergey Suslov, Kanika Khanna, Erica A Birkholz, Emily Armbruster, J Andrew McCammon, Rommie E Amaro, Joe Pogliano, Kevin D Corbett, Elizabeth VillaNature2022-08-03
Duodenal CD8+ T resident memory cell apoptosis contributes to gut barrier dysfunction and microbial translocation in early alcohol-associated liver disease in humans.Luca Maccioni, Axelle Loriot, Joseph Dewulf, Guido Bommer, Yves Horsmans, Nicolas Lanthier, Isabelle Leclercq, Bernd Schnabl, Peter StärkelAlimentary Pharmacology & Therapeutics2022-08-02
Fostering Sustainable Biomedical Research Training in Mozambique: A Spin-Off of the Medical Education Partnership Initiative.Emília Virgínia Noormahomed, Sérgio Noormahomed, Delfina Hlashwayo, Emília Martins, Mamudo Ismail, Stephen W Bickler, Jean Nachega, Manuel Mahoche, Kim E Barrett, Constance A Benson, Robert T SchooleyAnnals Of Global Health2022-08-02
Vascular Proteome Responses Precede Organ Dysfunction in a Murine Model of Staphylococcus aureus Bacteremia.James T Sorrentino, Gregory J Golden, Claire Morris, Chelsea D Painter, Victor Nizet, Alexandre Rosa Campos, Jeffrey W Smith, Christofer Karlsson, Johan Malmström, Nathan E Lewis, Jeffrey D Esko, Alejandro Gómez ToledoMSystems2022-08-01
Analysis of the FAST™ system for expedited identification and antimicrobial susceptibility testing of bloodborne pathogens.Peiting Kuo, Khrissa LeCrone, Megan Chiu, Susan Realegeno, David T PrideDiagnostic Microbiology And Infectious Disease2022-07-30
The group A interleukin-8 protease SpyCEP promotes bacterial intracellular survival by evasion of autophagy.René Bergmann, Giuseppe Gulotta, Federica Andreoni, Tomoko Sumitomo, Shigetada Kawabata, Annelies S Zinkernagel, Gursharan S Chhatwal, Victor Nizet, Manfred Rohde, Satoshi UchiyamaInfectious Microbes & Diseases2022-07-30
Evaluating impacts of syntenic block detection strategies on rearrangement phylogeny using Mycobacterium tuberculosis isolates.Afif Elghraoui, Siavash Mirarab, Krister M Swenson, Faramarz ValafarBioinformatics (Oxford, England)2022-07-29
Microbiota succession throughout life from the cradle to the grave.Cameron Martino, Amanda Hazel Dilmore, Zachary M Burcham, Jessica L Metcalf, Dilip Jeste, Rob KnightNature Reviews. Microbiology2022-07-29
RNA Fluorescence in situ Hybridization (FISH) to Visualize Microbial Colonization and Infection in Caenorhabditis elegans Intestines.Dalaena E Rivera, Vladimir Lažetić, Emily R Troemel, Robert J LuallenJournal Of Visualized Experiments : JoVE2022-07-27
Comparative Pharmacokinetics of Tixagevimab/Cilgavimab (AZD7442) Administered Intravenously Versus Intramuscularly in Symptomatic SARS-CoV-2 Infection.Rachel A Bender Ignacio, David A Wohl, Rosalin Arends, Venkatesh Pilla Reddy, Ying Mu, Arzhang Cyrus Javan, Michael D Hughes, Joseph J Eron, Judith S Currier, Davey Smith, Kara W Chew, Michael Gibbs, Courtney V FletcherClinical Pharmacology And Therapeutics2022-07-26
Non-invasive skin sampling detects systemically administered drugs in humans.Morgan Panitchpakdi, Kelly C Weldon, Alan K Jarmusch, Emily C Gentry, Arianna Choi, Yadira Sepulveda, Shaden Aguirre, Kunyang Sun, Jeremiah D Momper, Pieter C Dorrestein, Shirley M TsunodaPloS One2022-07-26
Correction for Rudicell et al., "High Prevalence of Simian Immunodeficiency Virus Infection in a Community of Savanna Chimpanzees".Rebecca S Rudicell, Alex K Piel, Fiona Stewart, Deborah L Moore, Gerald H Learn, Yingying Li, Jun Takehisa, Lilian Pintea, George M Shaw, Jim Moore, Paul M Sharp, Beatrice H HahnJournal Of Virology2022-07-26
Lymphatic-preserving treatment sequencing with immune checkpoint inhibition unleashes cDC1-dependent antitumor immunity in HNSCC.Robert Saddawi-Konefka, Aoife O'Farrell, Farhoud Faraji, Lauren Clubb, Michael M Allevato, Shawn M Jensen, Bryan S Yung, Zhiyong Wang, Victoria H Wu, Nana-Ama Anang, Riyam Al Msari, Shiruyeh Schokrpur, Ida Franiak Pietryga, Alfredo A Molinolo, Jill P Mesirov, Aaron B Simon, Bernard A Fox, Jack D Bui, Andrew Sharabi, Ezra E W Cohen, Joseph A Califano, J Silvio GutkindNature Communications2022-07-25
Protease-Responsive Peptide-Conjugated Mitochondrial-Targeting AIEgens for Selective Imaging and Inhibition of SARS-CoV-2-Infected Cells.Yong Cheng, Alex E Clark, Jiajing Zhou, Tengyu He, Yi Li, Raina M Borum, Matthew N Creyer, Ming Xu, Zhicheng Jin, Jingcheng Zhou, Wonjun Yim, Zhuohong Wu, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Jesse V JokerstACS Nano2022-07-25
Association of compassion and empathy with prosocial health behaviors and attitudes in a pandemic.Melissa M Karnaze, John Bellettiere, Cinnamon S BlossPloS One2022-07-22
TREM2 macrophages induced by human lipids drive inflammation in acne lesions.Tran H Do, Feiyang Ma, Priscila R Andrade, Rosane Teles, Bruno J de Andrade Silva, Chanyue Hu, Alejandro Espinoza, Jer-En Hsu, Chun-Seok Cho, Myungjin Kim, Jingyue Xi, Xianying Xing, Olesya Plazyo, Lam C Tsoi, Carol Cheng, Jenny Kim, Bryan D Bryson, Alan M O'Neill, Marco Colonna, Johann E Gudjonsson, Eynav Klechevsky, Jun Hee Lee, Richard L Gallo, Barry R Bloom, Matteo Pellegrini, Robert L ModlinScience Immunology2022-07-22
Coupling of distant ATPase domains in the circadian clock protein KaiC.Jeffrey A Swan, Colby R Sandate, Archana G Chavan, Alfred M Freeberg, Diana Etwaru, Dustin C Ernst, Joseph G Palacios, Susan S Golden, Andy LiWang, Gabriel C Lander, Carrie L PartchNature Structural & Molecular Biology2022-07-21
Harnessing the microbiome to prevent global biodiversity loss.Raquel S Peixoto, Christian R Voolstra, Michael Sweet, Carlos M Duarte, Susana Carvalho, Helena Villela, Jeantine E Lunshof, Lone Gram, Douglas C Woodhams, Jens Walter, Anna Roik, Ute Hentschel, Rebecca Vega Thurber, Brendan Daisley, Blake Ushijima, Daniele Daffonchio, Rodrigo Costa, Tina Keller-Costa, Jeff S Bowman, Alexandre S Rosado, Gregor Reid, Christopher E Mason, Jenifer B Walke, Torsten Thomas, Gabriele BergNature Microbiology2022-07-21
Omicron spike function and neutralizing activity elicited by a comprehensive panel of vaccines.John E Bowen, Amin Addetia, Ha V Dang, Cameron Stewart, Jack T Brown, William K Sharkey, Kaitlin R Sprouse, Alexandra C Walls, Ignacio G Mazzitelli, Jennifer K Logue, Nicholas M Franko, Nadine Czudnochowski, Abigail E Powell, Exequiel Dellota, Kumail Ahmed, Asefa Shariq Ansari, Elisabetta Cameroni, Andrea Gori, Alessandra Bandera, Christine M Posavad, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Shane Crotty, Najeeha Talat Iqbal, Davide Corti, Jorge Geffner, Gyorgy Snell, Renata Grifantini, Helen Y Chu, David VeeslerScience (New York, N.Y.)2022-07-19
Adaptive laboratory evolution and independent component analysis disentangle complex vancomycin adaptation trajectories.Anaëlle Fait, Yara Seif, Kasper Mikkelsen, Saugat Poudel, Jerry M Wells, Bernhard O Palsson, Hanne IngmerProceedings Of The National Academy Of Sciences Of The United States Of America2022-07-19
Association of Plasma Eicosanoid Levels With Immune, Viral, and Cognitive Outcomes in People With HIV.Pragney Deme, Mohammed Moniruzzaman, David Moore, Robert Heaton, Ronald Ellis, Scott Letendre, Norman HaugheyNeurology2022-07-18
Postural orthostatic tachycardia syndrome as a sequela of COVID-19.Cameron K Ormiston, Iwona Świątkiewicz, Pam R TaubHeart Rhythm2022-07-16
Mass Difference Matching Unfolds Hidden Molecular Structures of Dissolved Organic Matter.Carsten Simon, Kai Dührkop, Daniel Petras, Vanessa-Nina Roth, Sebastian Böcker, Pieter C Dorrestein, Gerd GleixnerEnvironmental Science & Technology2022-07-14
Genetic regulation of OAS1 nonsense-mediated decay underlies association with COVID-19 hospitalization in patients of European and African ancestries.A Rouf Banday, Megan L Stanifer, Oscar Florez-Vargas, Olusegun O Onabajo, Brenen W Papenberg, Muhammad A Zahoor, Lisa Mirabello, Timothy J Ring, Chia-Han Lee, Paul S Albert, Evangelos Andreakos, Evgeny Arons, Greg Barsh, Leslie G Biesecker, David L Boyle, Mark S Brahier, Andrea Burnett-Hartman, Mary Carrington, Euijin Chang, Pyoeng Gyun Choe, Rex L Chisholm, Leandro M Colli, Clifton L Dalgard, Carolynn M Dude, Jeff Edberg, Nathan Erdmann, Heather S Feigelson, Benedito A Fonseca, Gary S Firestein, Adam J Gehring, Cuncai Guo, Michelle Ho, Steven Holland, Amy A Hutchinson, Hogune Im, Les'Shon Irby, Michael G Ison, Naima T Joseph, Hong Bin Kim, Robert J Kreitman, Bruce R Korf, Steven M Lipkin, Siham M Mahgoub, Iman Mohammed, Guilherme L Paschoalini, Jennifer A Pacheco, Michael J Peluso, Daniel J Rader, David T Redden, Marylyn D Ritchie, Brooke Rosenblum, M Elizabeth Ross, Hanaisa P Sant Anna, Sharon A Savage, Sudha Sharma, Eleni Siouti, Alicia K Smith, Vasiliki Triantafyllia, Joselin M Vargas, Jose D Vargas, Anurag Verma, Vibha Vij, Duane R Wesemann, Meredith Yeager, Xu Yu, Yu Zhang, Steeve Boulant, Stephen J Chanock, Jordan J Feld, Ludmila Prokunina-OlssonNature Genetics2022-07-14
Non-Native Amino Acid Click Chemistry-Based Technology for Site-Specific Polysaccharide Conjugation to a Bacterial Protein Serving as Both Carrier and Vaccine Antigen.Neeraj Kapoor, Satoshi Uchiyama, Lucy Pill, Leslie Bautista, Angie Sedra, Lu Yin, Maritoni Regan, Ellen Chu, Taylor Rabara, Melissa Wong, Peter Davey, Jeff Fairman, Victor NizetACS Omega2022-07-11
The Prevalence and Determinants of NAFLD and MAFLD and Their Severity in the VA Primary Care Setting.Aaron P Thrift, Theresa H Nguyen, Codey Pham, Maya Balakrishnan, Fasiha Kanwal, Rohit Loomba, Hao T Duong, David Ramsey, Hashem B El-SeragClinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association2022-07-08
Updating Urinary Microbiome Analyses to Enhance Biologic Interpretation.Nazema Y Siddiqui, Li Ma, Linda Brubaker, Jialiang Mao, Carter Hoffman, Erin M Dahl, Zhuoqun Wang, Lisa KarstensFrontiers In Cellular And Infection Microbiology2022-07-08
Comparative Dynamics of Delta and Omicron SARS-CoV-2 Variants across and between California and Mexico.Sanjay R Mehta, Davey M Smith, Celia Boukadida, Antoine ChaillonViruses2022-07-08
Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.Smruthi Karthikeyan, Joshua I Levy, Peter De Hoff, Greg Humphrey, Amanda Birmingham, Kristen Jepsen, Sawyer Farmer, Helena M Tubb, Tommy Valles, Caitlin E Tribelhorn, Rebecca Tsai, Stefan Aigner, Shashank Sathe, Niema Moshiri, Benjamin Henson, Adam M Mark, Abbas Hakim, Nathan A Baer, Tom Barber, Pedro Belda-Ferre, Marisol Chacón, Willi Cheung, Evelyn S Cresini, Emily R Eisner, Alma L Lastrella, Elijah S Lawrence, Clarisse A Marotz, Toan T Ngo, Tyler Ostrander, Ashley Plascencia, Rodolfo A Salido, Phoebe Seaver, Elizabeth W Smoot, Daniel McDonald, Robert M Neuhard, Angela L Scioscia, Alysson M Satterlund, Elizabeth H Simmons, Dismas B Abelman, David Brenner, Judith C Bruner, Anne Buckley, Michael Ellison, Jeffrey Gattas, Steven L Gonias, Matt Hale, Faith Hawkins, Lydia Ikeda, Hemlata Jhaveri, Ted Johnson, Vince Kellen, Brendan Kremer, Gary Matthews, Ronald W McLawhon, Pierre Ouillet, Daniel Park, Allorah Pradenas, Sharon Reed, Lindsay Riggs, Alison Sanders, Bradley Sollenberger, Angela Song, Benjamin White, Terri Winbush, Christine M Aceves, Catelyn Anderson, Karthik Gangavarapu, Emory Hufbauer, Ezra Kurzban, Justin Lee, Nathaniel L Matteson, Edyth Parker, Sarah A Perkins, Karthik S Ramesh, Refugio Robles-Sikisaka, Madison A Schwab, Emily Spencer, Shirlee Wohl, Laura Nicholson, Ian H Mchardy, David P Dimmock, Charlotte A Hobbs, Omid Bakhtar, Aaron Harding, Art Mendoza, Alexandre Bolze, David Becker, Elizabeth T Cirulli, Magnus Isaksson, Kelly M Schiabor Barrett, Nicole L Washington, John D Malone, Ashleigh Murphy Schafer, Nikos Gurfield, Sarah Stous, Rebecca Fielding-Miller, Richard S Garfein, Tommi Gaines, Cheryl Anderson, Natasha K Martin, Robert Schooley, Brett Austin, Duncan R MacCannell, Stephen F Kingsmore, William Lee, Seema Shah, Eric McDonald, Alexander T Yu, Mark Zeller, Kathleen M Fisch, Christopher Longhurst, Patty Maysent, David Pride, Pradeep K Khosla, Louise C Laurent, Gene W Yeo, Kristian G Andersen, Rob KnightNature2022-07-07
Enhancing untargeted metabolomics using metadata-based source annotation.Julia M Gauglitz, Kiana A West, Wout Bittremieux, Candace L Williams, Kelly C Weldon, Morgan Panitchpakdi, Francesca Di Ottavio, Christine M Aceves, Elizabeth Brown, Nicole C Sikora, Alan K Jarmusch, Cameron Martino, Anupriya Tripathi, Michael J Meehan, Kathleen Dorrestein, Justin P Shaffer, Roxana Coras, Fernando Vargas, Lindsay DeRight Goldasich, Tara Schwartz, MacKenzie Bryant, Gregory Humphrey, Abigail J Johnson, Katharina Spengler, Pedro Belda-Ferre, Edgar Diaz, Daniel McDonald, Qiyun Zhu, Emmanuel O Elijah, Mingxun Wang, Clarisse Marotz, Kate E Sprecher, Daniela Vargas-Robles, Dana Withrow, Gail Ackermann, Lourdes Herrera, Barry J Bradford, Lucas Maciel Mauriz Marques, Juliano Geraldo Amaral, Rodrigo Moreira Silva, Flavio Protasio Veras, Thiago Mattar Cunha, Rene Donizeti Ribeiro Oliveira, Paulo Louzada-Junior, Robert H Mills, Paulina K Piotrowski, Stephanie L Servetas, Sandra M Da Silva, Christina M Jones, Nancy J Lin, Katrice A Lippa, Scott A Jackson, Rima Kaddurah Daouk, Douglas Galasko, Parambir S Dulai, Tatyana I Kalashnikova, Curt Wittenberg, Robert Terkeltaub, Megan M Doty, Jae H Kim, Kyung E Rhee, Julia Beauchamp-Walters, Kenneth P Wright, Maria Gloria Dominguez-Bello, Mark Manary, Michelli F Oliveira, Brigid S Boland, Norberto Peporine Lopes, Monica Guma, Austin D Swafford, Rachel J Dutton, Rob Knight, Pieter C DorresteinNature Biotechnology2022-07-07
Spike-heparan sulfate interactions in SARS-CoV-2 infection.Fiona L Kearns, Daniel R Sandoval, Lorenzo Casalino, Thomas M Clausen, Mia A Rosenfeld, Charlotte B Spliid, Rommie E Amaro, Jeffrey D EskoCurrent Opinion In Structural Biology2022-07-06
Host-parasite coevolution promotes innovation through deformations in fitness landscapes.Animesh Gupta, Luis Zaman, Hannah M Strobel, Jenna Gallie, Alita R Burmeister, Benjamin Kerr, Einat S Tamar, Roy Kishony, Justin R MeyerELife2022-07-06
Liver cirrhosis and immune dysfunction.Elda Hasa, Phillipp Hartmann, Bernd SchnablInternational Immunology2022-07-06
Increased Innate Immune Susceptibility in Hyperpigmented Bacteriophage-Resistant Mutants of Pseudomonas aeruginosa.Nitasha D Menon, Samuel Penziner, Elizabeth T Montaño, Raymond Zurich, David T Pride, Bipin G Nair, Geetha B Kumar, Victor NizetAntimicrobial Agents And Chemotherapy2022-07-06
Genomically Silent Refractory Gastric Cancer in a Young Patient Exhibits Overexpression of CXCL5.Jonathan Hernandez, Michael A Turner, Prerna Bali, Mojgan Hosseini, Michael Bouvet, Kaitlyn Kelly, Marygorret ObonyoCurrent Oncology (Toronto, Ont.)2022-07-06
Effects of single and dual hypocretin-receptor blockade or knockdown of hypocretin projections to the central amygdala on alcohol drinking in dependent male rats.Gabriel M Aldridge, Tyler A Zarin, Adam J Brandner, Olivier George, Nicholas W Gilpin, Vez Repunte-Canonigo, Pietro P Sanna, George F Koob, Leandro F Vendruscolo, Brooke E SchmeichelAddiction Neuroscience2022-07-03
Willingness of older Canadians with HIV to participate in HIV cure research near and after the end-of-life: A mixed-method study.David Lessard, Karine Dube, Martin Bilodeau, Patrick Keeler, Shari Margolese, Ron Rosenes, Liliya Sinyavskaya, Madeleine Durand, Erika Benko, Colin Kovacs, Charlotte Guerlotté, Wangari E Tharao, Keresa Arnold, Renée Masching, Darien Taylor, José Sousa, Mario Ostrowski, Jeff Taylor, Andy Kaytes, Davey Smith, Sara Gianella Weibel, Nicolas Chomont, Jonathan B Angel, Jean-Pierre Routy, Eric Cohen, Bertrand Lebouche, Cecilia T CostiniukAIDS Research And Human Retroviruses2022-07-01
T Cells in Multisystem Inflammatory Syndrome in Children (MIS-C) Have a Predominant CD4+ T Helper Response to SARS-CoV-2 Peptides and Numerous Virus-Specific CD4- CD8- Double-Negative T Cells.Li-En Hsieh, Jaeyoon Song, Alba Grifoni, Chisato Shimizu, Adriana H Tremoulet, Kirsten B Dummer, Jane C Burns, Alessandro Sette, Alessandra FrancoInternational Journal Of Molecular Sciences2022-06-29
Human Milk Oligosaccharides Impact Cellular and Inflammatory Gene Expression and Immune Response.Fernanda Rosa, Ashok K Sharma, Manoj Gurung, David Casero, Katelin Matazel, Lars Bode, Christy Simecka, Ahmed A Elolimy, Patricia Tripp, Christopher Randolph, Timothy W Hand, Keith D Williams, Tanya LeRoith, Laxmi YeruvaFrontiers In Immunology2022-06-29
Phage Cocktails Constrain the Growth of .Stephen Wandro, Pooja Ghatbale, Hedieh Attai, Clark Hendrickson, Cyril Samillano, Joy Suh, Sage J B Dunham, David T Pride, Katrine WhitesonMSystems2022-06-28
Context-aware deconvolution of cell-cell communication with Tensor-cell2cell.Erick Armingol, Hratch M Baghdassarian, Cameron Martino, Araceli Perez-Lopez, Caitlin Aamodt, Rob Knight, Nathan E LewisNature Communications2022-06-27
Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity.Amitesh Anand, Arjun Patel, Ke Chen, Connor A Olson, Patrick V Phaneuf, Cameron Lamoureux, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O PalssonNature Communications2022-06-27
Heterologous Expression in of the Columbamide Pathway from the Cyanobacterium and Production of New Analogs.Arnaud Taton, Sebastian Rohrer, Brienna Diaz, Raphael Reher, Andres Mauricio Caraballo Rodriguez, Marsha L Pierce, Pieter C Dorrestein, Lena Gerwick, William H Gerwick, James W GoldenACS Chemical Biology2022-06-27
The molecular impact of life in an indoor environment.Alexander A Aksenov, Rodolfo A Salido, Alexey V Melnik, Caitriona Brennan, Asker Brejnrod, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, Franck Lejzerowicz, Delphine K Farmer, Marina E Vance, Rob Knight, Pieter C DorresteinScience Advances2022-06-24
Immunological memory to SARS-CoV-2 infection and COVID-19 vaccines.Alessandro Sette, Shane CrottyImmunological Reviews2022-06-22
An M protein coiled coil unfurls and exposes its hydrophobic core to capture LL-37.Piotr Kolesinski, Kuei-Chen Wang, Yujiro Hirose, Victor Nizet, Partho GhoshELife2022-06-21
Monoclonal antibody treatment drives rapid culture conversion in SARS-CoV-2 infection.Julie Boucau, Kara W Chew, Manish C Choudhary, Rinki Deo, James Regan, James P Flynn, Charles R Crain, Michael D Hughes, Justin Ritz, Carlee Moser, Joan A Dragavon, Arzhang C Javan, Ajay Nirula, Paul Klekotka, Alexander L Greninger, Robert W Coombs, William A Fischer, Eric S Daar, David A Wohl, Joseph J Eron, Judith S Currier, Davey M Smith, , Jonathan Z Li, Amy K Barczak, Cell Reports. Medicine2022-06-20
Contribution of Streptococcus pyogenes M87 protein to innate immune resistance and virulence.Yujiro Hirose, Piotr Kolesinski, Masanobu Hiraoka, Satoshi Uchiyama, Raymond H Zurich, Monika Kumaraswamy, Elisabet Bjanes, Partho Ghosh, Shigetada Kawabata, Victor NizetMicrobial Pathogenesis2022-06-17
A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities.Justin P Shaffer, Carolina S Carpenter, Cameron Martino, Rodolfo A Salido, Jeremiah J Minich, MacKenzie Bryant, Karenina Sanders, Tara Schwartz, Gregory Humphrey, Austin D Swafford, Rob KnightBioTechniques2022-06-17
Single-cell characterization of step-wise acquisition of carboplatin resistance in ovarian cancer.Alexander T Wenzel, Devora Champa, Hrishi Venkatesh, Si Sun, Cheng-Yu Tsai, Jill P Mesirov, Jack D Bui, Stephen B Howell, Olivier HarismendyNPJ Systems Biology And Applications2022-06-17
Characterizing genetic transmission networks among newly diagnosed HIV-1 infected individuals in eastern China: 2012-2016.Xiaobei Ding, Antoine Chaillon, Xiaohong Pan, Jiafeng Zhang, Ping Zhong, Lin He, Wanjun Chen, Qin Fan, Jun Jiang, Mingyu Luo, Yan Xia, Zhihong Guo, Davey M SmithPloS One2022-06-16
Small-Molecule Thioesters as SARS-CoV-2 Main Protease Inhibitors: Enzyme Inhibition, Structure-Activity Relationships, Antiviral Activity, and X-ray Structure Determination.Thanigaimalai Pillaiyar, Philipp Flury, Nadine Krüger, Haixia Su, Laura Schäkel, Elany Barbosa Da Silva, Olga Eppler, Thales Kronenberger, Tianqing Nie, Stephanie Luedtke, Cheila Rocha, Katharina Sylvester, Marvin R I Petry, James H McKerrow, Antti Poso, Stefan Pöhlmann, Michael Gütschow, Anthony J O'Donoghue, Yechun Xu, Christa E Müller, Stefan A LauferJournal Of Medicinal Chemistry2022-06-16
Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings.Victor J Cantú, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Karenina Sanders, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Evelyn S Crescini, Peter De Hoff, Emily Eisner, Abbas Hakim, Bhavika Kapadia, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Shashank Sathe, Phoebe Seaver, Elizabeth W Smoot, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob KnightMSystems2022-06-15
Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings.Victor J Cantú, Karenina Sanders, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Peter De Hoff, Emily Eisner, Abbas Hakim, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Ashley Plascencia, Shashank Sathe, Elizabeth W Smoot, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob KnightMSystems2022-06-15
Potential Immune-Microbiome Interactions in Breast Cancer May Advance Treatment: What's Holding Us Back?Austin D Swafford, Soni Khandelwal, Shrikant BhuteCritical Reviews In Immunology2022-06-13
Discovery of Triple Inhibitors of Both SARS-CoV-2 Proteases and Human Cathepsin L.Ittipat Meewan, Jacob Kattoula, Julius Y Kattoula, Danielle Skinner, Pavla Fajtová, Miriam A Giardini, Brendon Woodworth, James H McKerrow, Jair Lage de Siqueira-Neto, Anthony J O'Donoghue, Ruben AbagyanPharmaceuticals (Basel, Switzerland)2022-06-13
Baseline microbiome and metabolome are associated with response to ITIS diet in an exploratory trial in patients with rheumatoid arthritis.Roxana Coras, Cameron Martino, Julia M Gauglitz, Francesca Cedola, Anupriya Tripathi, Alan K Jarmusch, Maram Alharthi, Marta Fernandez-Bustamante, Meritxell Agustin-Perez, Abha Singh, Soo-In Choi, Tania Rivera, Katherine Nguyen, Tatyana Shekhtman, Tiffany Holt, Susan Lee, Shahrokh Golshan, Pieter C Dorrestein, Rob Knight, Monica GumaClinical And Translational Medicine2022-06-13
Diurnal and eating-associated microbial patterns revealed via high-frequency saliva sampling.Yichen Hu, Amnon Amir, Xiaochang Huang, Yan Li, Shi Huang, Elaine Wolfe, Sophie Weiss, Rob Knight, Zhenjiang Zech XuGenome Research2022-06-10
Letter: non-invasive prediction models to exclude cirrhosis in NAFLD-not everyone fits the mould. Authors' reply.Danielle Brandman, Marie Boyle, Stuart McPherson, Mark L Van Natta, Arun J Sanyal, Kris Kowdley, Brent Neuschwander-Tetri, Naga Chalasani, Manal F Abdelmalek, Norah A Terrault, Art McCullough, Ricki Bettencourt, Cyrielle Caussy, David E Kleiner, Cynthia Behling, James Tonascia, Quentin M Anstee, Rohit LoombaAlimentary Pharmacology & Therapeutics2022-06-10
Active genetics comes alive: Exploring the broad applications of CRISPR-based selfish genetic elements (or gene-drives): Exploring the broad applications of CRISPR-based selfish genetic elements (or gene-drives).Valentino M Gantz, Ethan BierBioEssays : News And Reviews In Molecular, Cellular And Developmental Biology2022-06-09
Binding of the SARS-CoV-2 envelope E protein to human BRD4 is essential for infection.Kendra R Vann, Arpan Acharya, Suk Min Jang, Catherine Lachance, Mohamad Zandian, Tina A Holt, Audrey L Smith, Kabita Pandey, Donald L Durden, Dalia El-Gamal, Jacques Côté, Siddappa N Byrareddy, Tatiana G KutateladzeStructure (London, England : 1993)2022-06-09
The Urobiomes of Adult Women With Various Lower Urinary Tract Symptoms Status Differ: A Re-Analysis.Cara Joyce, Thomas Halverson, Caroline Gonzalez, Linda Brubaker, Alan J WolfeFrontiers In Cellular And Infection Microbiology2022-06-09
Risk assessment with gut microbiome and metabolite markers in NAFLD development.Howell Leung, Xiaoxue Long, Yueqiong Ni, Lingling Qian, Emmanouil Nychas, Sara Leal Siliceo, Dennis Pohl, Kati Hanhineva, Yan Liu, Aimin Xu, Henrik B Nielsen, Eugeni Belda, Karine Clément, Rohit Loomba, Huating Li, Weiping Jia, Gianni PanagiotouScience Translational Medicine2022-06-08
Solithromycin in Children and Adolescents With Community-acquired Bacterial Pneumonia.Jason E Lang, Christoph P Hornik, Carrie Elliott, Adam Silverstein, Chi Hornik, Amira Al-Uzri, Miroslava Bosheva, John S Bradley, Charissa Fay Corazon Borja-Tabora, David Di John, Ana Mendez Echevarria, Jessica E Ericson, David Friedel, Ferenc Gonczi, Marie Grace Dawn Isidro, Laura P James, Krisztina Kalocsai, Ioannis Koutroulis, Istvan Laki, Anna Lisa T Ong-Lim, Marta Nad, Gabor Simon, Salma Syed, Eva Szabo, Daniel K Benjamin, Michael Cohen-Wolkowiez, The Pediatric Infectious Disease Journal2022-06-07
Correlates of protection against SARS-CoV-2 infection and COVID-19 disease.David Goldblatt, Galit Alter, Shane Crotty, Stanley A PlotkinImmunological Reviews2022-06-05
The oral microbiome and breast cancer and non-malignant breast disease, and its relationship with the fecal microbiome in the Ghana Breast Health Study.Zeni Wu, Doratha A Byrd, Yunhu Wan, Daniel Ansong, Joe-Nat Clegg-Lamptey, Beatrice Wiafe-Addai, Lawrence Edusei, Ernest Adjei, Nicholas Titiloye, Florence Dedey, Francis Aitpillah, Joseph Oppong, Verna Vanderpuye, Ernest Osei-Bonsu, Casey L Dagnall, Kristine Jones, Amy Hutchinson, Belynda D Hicks, Thomas U Ahearn, Jianxin Shi, Rob Knight, Richard Biritwum, Joel Yarney, Seth Wiafe, Baffour Awuah, Kofi Nyarko, Jonine D Figueroa, Rashmi Sinha, Montserrat Garcia-Closas, Louise A Brinton, Emily VogtmannInternational Journal Of Cancer2022-06-03
Changing global epidemiology of liver cancer from 2010 to 2019: NASH is the fastest growing cause of liver cancer.Daniel Q Huang, Amit G Singal, Yuko Kono, Darren J H Tan, Hashem B El-Serag, Rohit LoombaCell Metabolism2022-06-03
Synchrony and idiosyncrasy in the gut microbiome of wild baboons.Johannes R Björk, Mauna R Dasari, Kim Roche, Laura Grieneisen, Trevor J Gould, Jean-Christophe Grenier, Vania Yotova, Neil Gottel, David Jansen, Laurence R Gesquiere, Jacob B Gordon, Niki H Learn, Tim L Wango, Raphael S Mututua, J Kinyua Warutere, Long'ida Siodi, Sayan Mukherjee, Luis B Barreiro, Susan C Alberts, Jack A Gilbert, Jenny Tung, Ran Blekhman, Elizabeth A ArchieNature Ecology & Evolution2022-06-02
Targeted isolation of diverse human protective broadly neutralizing antibodies against SARS-like viruses.Wan-Ting He, Rami Musharrafieh, Ge Song, Katharina Dueker, Longping V Tse, David R Martinez, Alexandra Schäfer, Sean Callaghan, Peter Yong, Nathan Beutler, Jonathan L Torres, Reid M Volk, Panpan Zhou, Meng Yuan, Hejun Liu, Fabio Anzanello, Tazio Capozzola, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, Ian A Wilson, Yana Safonova, Andrew B Ward, Thomas F Rogers, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees AndrabiNature Immunology2022-06-02
Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention.Stephanie B Orchanian, Julia M Gauglitz, Stephen Wandro, Kelly C Weldon, Megan Doty, Kristina Stillwell, Shalisa Hansen, Lingjing Jiang, Fernando Vargas, Kyung E Rhee, Julie C Lumeng, Pieter C Dorrestein, Rob Knight, Jae H Kim, Se Jin Song, Austin D SwaffordAdvanced Biology2022-06-01
Epidemiological and Clinical Features of Kawasaki Disease During the COVID-19 Pandemic in the United States.Jennifer A Burney, Samantha C Roberts, Laurel L DeHaan, Chisato Shimizu, Emelia V Bainto, Jane W Newburger, Samuel Dominguez, Pei-Ni Jone, Preeti Jaggi, Jacqueline R Szmuszkovicz, Anne H Rowley, Nichole Samuy, Paul Scalici, Adriana H Tremoulet, Daniel R Cayan, Jane C Burns, JAMA Network Open2022-06-01
Risk of Hepatocellular Carcinoma With Tenofovir vs Entecavir Treatment for Chronic Hepatitis B Virus: A Reconstructed Individual Patient Data Meta-analysis.Darren Jun Hao Tan, Cheng Han Ng, Phoebe Wen Lin Tay, Nicholas Syn, Mark D Muthiah, Wen Hui Lim, Ansel Shao Pin Tang, Kai En Lim, Grace En Hui Lim, Nobuharu Tamaki, Beom Kyung Kim, Margaret Li Peng Teng, James Fung, Rohit Loomba, Mindie H Nguyen, Daniel Q HuangJAMA Network Open2022-06-01
Optimizing UniFrac with OpenACC Yields Greater Than One Thousand Times Speed Increase.Igor Sfiligoi, George Armstrong, Antonio Gonzalez, Daniel McDonald, Rob KnightMSystems2022-05-31
Bacteriophage-Mediated Perturbation of Defined Bacterial Communities in an Model of the Human Gut.Hedieh Attai, Jacob Wilde, Roland Liu, Jessica Chopyk, Andrew G Garcia, Emma Allen-Vercoe, David PrideMicrobiology Spectrum2022-05-31
Cross-reactive immunity against the SARS-CoV-2 Omicron variant is low in pediatric patients with prior COVID-19 or MIS-C.Juanjie Tang, Tanya Novak, Julian Hecker, Gabrielle Grubbs, Fatema Tuz Zahra, Lorenza Bellusci, Sara Pourhashemi, Janet Chou, Kristin Moffitt, Natasha B Halasa, Stephanie P Schwartz, Tracie C Walker, Keiko M Tarquinio, Matt S Zinter, Mary A Staat, Shira J Gertz, Natalie Z Cvijanovich, Jennifer E Schuster, Laura L Loftis, Bria M Coates, Elizabeth H Mack, Katherine Irby, Julie C Fitzgerald, Courtney M Rowan, Michele Kong, Heidi R Flori, Aline B Maddux, Steven L Shein, Hillary Crandall, Janet R Hume, Charlotte V Hobbs, Adriana H Tremoulet, Chisato Shimizu, Jane C Burns, Sabrina R Chen, Hye Kyung Moon, Christoph Lange, Adrienne G Randolph, Surender KhuranaNature Communications2022-05-27
Fueling the fire in the gut.Chia-Hao Lin, Li-Fan LuThe Journal Of Experimental Medicine2022-05-27
Humoral and cellular immune memory to four COVID-19 vaccines.Zeli Zhang, Jose Mateus, Camila H Coelho, Jennifer M Dan, Carolyn Rydyznski Moderbacher, Rosa Isela Gálvez, Fernanda H Cortes, Alba Grifoni, Alison Tarke, James Chang, E Alexandar Escarrega, Christina Kim, Benjamin Goodwin, Nathaniel I Bloom, April Frazier, Daniela Weiskopf, Alessandro Sette, Shane CrottyCell2022-05-27
What were the historical reasons for the resistance to recognizing airborne transmission during the COVID-19 pandemic?Jose L Jimenez, Linsey C Marr, Katherine Randall, Edward Thomas Ewing, Zeynep Tufekci, Trish Greenhalgh, Raymond Tellier, Julian W Tang, Yuguo Li, Lidia Morawska, Jonathan Mesiano-Crookston, David Fisman, Orla Hegarty, Stephanie J Dancer, Philomena M Bluyssen, Giorgio Buonanno, Marcel G L C Loomans, William P Bahnfleth, Maosheng Yao, Chandra Sekhar, Pawel Wargocki, Arsen K Melikov, Kimberly A PratherIndoor Air2022-05-25
Maternal diet is associated with human milk oligosaccharide profile.Marta Selma-Royo, Sonia González, Miguel Gueimonde, Melinda Chang, Annalee Fürst, Cecilia Martínez-Costa, Lars Bode, Maria Carmen ColladoMolecular Nutrition & Food Research2022-05-25
The Ubiquitous Human Skin Commensal Staphylococcus hominis Protects against Opportunistic Pathogens.Morgan M Severn, Michael R Williams, Ali Shahbandi, Zoie L Bunch, Laurie M Lyon, Amber Nguyen, Livia S Zaramela, Daniel A Todd, Karsten Zengler, Nadja B Cech, Richard L Gallo, Alexander R HorswillMBio2022-05-24
Demographic and clinical characteristics associated with variations in antibody response to BNT162b2 COVID-19 vaccination among healthcare workers at an academic medical centre: a longitudinal cohort analysis.Joseph E Ebinger, Sandy Joung, Yunxian Liu, Min Wu, Brittany Weber, Brian Claggett, Patrick G Botting, Nancy Sun, Matthew Driver, Yu Hung Kao, Briana Khuu, Timothy Wynter, Trevor-Trung Nguyen, Mona Alotaibi, John C Prostko, Edwin C Frias, James L Stewart, Helen S Goodridge, Peter Chen, Stanley C Jordan, Mohit Jain, Sonia Sharma, Justyna Fert-Bober, Jennifer E Van Eyk, Margo B Minissian, Moshe Arditi, Gil Y Melmed, Jonathan G Braun, Dermot P B McGovern, Susan Cheng, Kimia SobhaniBMJ Open2022-05-24
A Prebiotic Diet Alters the Fecal Microbiome and Improves Sleep in Response to Sleep Disruption in Rats.Samuel J Bowers, Keith C Summa, Robert S Thompson, Antonio González, Fernando Vargas, Christopher Olker, Peng Jiang, Christopher A Lowry, Pieter C Dorrestein, Rob Knight, Kenneth P Wright, Monika Fleshner, Fred W Turek, Martha H VitaternaFrontiers In Neuroscience2022-05-24
Supporting the Art: Medication Adherence Patterns in Persons Prescribed Ingestible Sensor-enabled Oral Pre-Exposure Prophylaxis to Prevent Human Immunodeficiency Virus (HIV) Infection.Sara H Browne, Florin Vaida, Anya Umlauf, Amanda J Tucker, Terrence F Blaschke, Constance A BensonClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2022-05-23
Fine scale transitions of the microbiota and metabolome along the gastrointestinal tract of herbivorous fishes.Wesley J Sparagon, Emily C Gentry, Jeremiah J Minich, Lisa Vollbrecht, Lieve M L Laurens, Eric E Allen, Neil A Sims, Pieter C Dorrestein, Linda Wegley Kelly, Craig E NelsonAnimal Microbiome2022-05-23
Ancient plant-like terpene biosynthesis in corals.Immo Burkhardt, Tristan de Rond, Percival Yang-Ting Chen, Bradley S MooreNature Chemical Biology2022-05-23
Complex and unexpected outcomes of antibiotic therapy against a polymicrobial infection.Lydia-Ann J Ghuneim, Ruma Raghuvanshi, Kerri A Neugebauer, Douglas V Guzior, Martin H Christian, Bella Schena, Jeremiah M Feiner, Alicia Castillo-Bahena, Jenna Mielke, Marc McClelland, Douglas Conrad, Isaac Klapper, Tianyu Zhang, Robert A QuinnThe ISME Journal2022-05-21
Changes in the gut microbiome associated with liver stiffness improvement in nonalcoholic steatohepatitis.Suzanne R Sharpton, Ondrej Podlaha, Jen-Chieh Chuang, Yevgeniy Gindin, Robert P Myers, Rohit LoombaTherapeutic Advances In Gastroenterology2022-05-18
Biosynthesis of Guanitoxin Enables Global Environmental Detection in Freshwater Cyanobacteria.Stella T Lima, Timothy R Fallon, Jennifer L Cordoza, Jonathan R Chekan, Endrews Delbaje, Austin R Hopiavuori, Danillo O Alvarenga, Steffaney M Wood, Hanna Luhavaya, Jackson T Baumgartner, Felipe A Dörr, Augusto Etchegaray, Ernani Pinto, Shaun M K McKinnie, Marli F Fiore, Bradley S MooreJournal Of The American Chemical Society2022-05-18
Virologic and Immunologic Characterization of Coronavirus Disease 2019 Recrudescence After Nirmatrelvir/Ritonavir Treatment.Aaron F Carlin, Alex E Clark, Antoine Chaillon, Aaron F Garretson, William Bray, Magali Porrachia, AsherLev T Santos, Tariq M Rana, Davey M SmithClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2022-05-16
SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with sp.Victor J Cantú, Rodolfo A Salido, Shi Huang, Gibraan Rahman, Rebecca Tsai, Holly Valentine, Celestine G Magallanes, Stefan Aigner, Nathan A Baer, Tom Barber, Pedro Belda-Ferre, Maryann Betty, MacKenzie Bryant, Martín Casas Maya, Anelizze Castro-Martínez, Marisol Chacón, Willi Cheung, Evelyn S Crescini, Peter De Hoff, Emily Eisner, Sawyer Farmer, Abbas Hakim, Laura Kohn, Alma L Lastrella, Elijah S Lawrence, Sydney C Morgan, Toan T Ngo, Alhakam Nouri, Ashley Plascencia, Christopher A Ruiz, Shashank Sathe, Phoebe Seaver, Tara Shwartz, Elizabeth W Smoot, R Tyler Ostrander, Thomas Valles, Gene W Yeo, Louise C Laurent, Rebecca Fielding-Miller, Rob KnightMSystems2022-05-16
Nitrite Generating and Depleting Capacity of the Oral Microbiome and Cardiometabolic Risk: Results from ORIGINS.Charlene E Goh, Bruno Bohn, Clarisse Marotz, Rebecca Molinsky, Sumith Roy, Bruce J Paster, Ching-Yuan Chen, Michael Rosenbaum, Melana Yuzefpolskaya, Paolo C Colombo, Moïse Desvarieux, Panos N Papapanou, David R Jacobs, Rob Knight, Ryan T DemmerJournal Of The American Heart Association2022-05-16
An Artificial Intelligence-guided signature reveals the shared host immune response in MIS-C and Kawasaki disease.Pradipta Ghosh, Gajanan D Katkar, Chisato Shimizu, Jihoon Kim, Soni Khandelwal, Adriana H Tremoulet, John T Kanegaye, , Joseph Bocchini, Soumita Das, Jane C Burns, Debashis SahooNature Communications2022-05-16
Case Series of Successful Intravenous Immunoglobulin (IVIG) Treatment in 4 Pregnant Patients with Severe COVID-19-Induced Hypoxia.Matthew Geriak, Dominic McGrosso, David J Gonzalez, Matthew Dehner, George SakoulasThe American Journal Of Case Reports2022-05-14
SARS-CoV-2 Seroconversion in an Adult Horse with Direct Contact to a COVID-19 Individual.Nicola Pusterla, Antoine Chaillon, Caroline Ignacio, Davey M Smith, Samantha Barnum, Kaila O Y Lawton, Greg Smith, Bradley PickeringViruses2022-05-14
Changes in Gut Microbiome Composition with Healthy Aging in Humans: Links to Vascular Endothelial Function.Nathan Greenberg, Marissa L Burnsed-Torres, Antonio Gonzalez, Abigail G Casso, Kara L Lubieniecki, Brian P Ziemba, Matthew J Rossman, Emily C Adam, Michel Chonchol, Kevin P Davy, Rob Knight, Douglas R Seals, Vienna E BruntFASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology2022-05-13
Evaluation of Small Molecule Inhibitors of Pseudomonas Virulence factor LasB as Non-Traditional Immunotherapeutics.Sophia R Chou, Doris L LaRock, Joshua Sun, Victor Nizet, Julia K Bohannon, Christopher N LaRockFASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology2022-05-13
Insights from C. elegans into Microsporidia Biology and Host-Pathogen Relationships.Eillen Tecle, Emily R TroemelExperientia Supplementum (2012)2022-05-11
Variation in Survival and Gut Microbiome Composition of Hatchery-Grown Native Oysters at Various Locations within the Puget Sound.Emily Kunselman, Jeremiah J Minich, Micah Horwith, Jack A Gilbert, Eric E AllenMicrobiology Spectrum2022-05-10
The Impact of Exclusive Enteral Nutrition on the Gut Microbiome of Children with Medical Complexity.Julia Beauchamp-Walters, Gajender Aleti, Lourdes Herrera, Justine Debelius, Natalie Lima, Pritha Dalal, Suzi Hong, Rob Knight, Kyung E RheeJPEN. Journal Of Parenteral And Enteral Nutrition2022-05-08
Clinical Features of Patients Hospitalized for All Routes of Anthrax, 1880-2018: A Systematic Review.Katherine Hendricks, Marissa K Person, John S Bradley, Thitipong Mongkolrattanothai, Nathaniel Hupert, Peter Eichacker, Arthur M Friedlander, William A BowerClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2022-05-06
Cerebrospinal Fluid Shunt Infections: A Multicenter Pediatric Study.Alastair McAlpine, Joan L Robinson, Michelle Barton, Archana Balamohan, H Dele Davies, Gwenn Skar, Marie-Astrid Lefebvre, Ahmed Almadani, Dolores Freire, Nicole Le Saux, Jennifer Bowes, Jocelyn A Srigley, Patrick Passarelli, John Bradley, Sarah Khan, Rupeena Purewal, Isabelle Viel-Thériault, Adrianna Ranger, Michael T Hawkes, The Pediatric Infectious Disease Journal2022-05-06
Zebrafish: an underutilized tool for discovery in host-microbe interactions.Alexandra Stream, Cressida A MadiganTrends In Immunology2022-05-05
A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli.Irina A Rodionova, Ye Gao, Jonathan Monk, Ying Hefner, Nicholas Wong, Richard Szubin, Hyun Gyu Lim, Dmitry A Rodionov, Zhongge Zhang, Milton H Saier, Bernhard O PalssonScientific Reports2022-05-04
Subcellular organization of viral particles during maturation of nucleus-forming jumbo phage.Vorrapon Chaikeeratisak, Kanika Khanna, Katrina T Nguyen, MacKennon E Egan, Eray Enustun, Emily Armbruster, Jina Lee, Kit Pogliano, Elizabeth Villa, Joe PoglianoScience Advances2022-05-04
Author Correction: Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly.Mahul Chakraborty, Arunachalam Ramaiah, Adriana Adolfi, Paige Halas, Bhagyashree Kaduskar, Luna Thanh Ngo, Suvratha Jayaprasad, Kiran Paul, Saurabh Whadgar, Subhashini Srinivasan, Suresh Subramani, Ethan Bier, Anthony A James, J J EmersonBMC Biology2022-05-02
Transcription Factor 4 loss-of-function is associated with deficits in progenitor proliferation and cortical neuron content.Fabio Papes, Antonio P Camargo, Janaina S de Souza, Vinicius M A Carvalho, Ryan A Szeto, Erin LaMontagne, José R Teixeira, Simoni H Avansini, Sandra M Sánchez-Sánchez, Thiago S Nakahara, Carolina N Santo, Wei Wu, Hang Yao, Barbara M P Araújo, Paulo E N F Velho, Gabriel G Haddad, Alysson R MuotriNature Communications2022-05-02
Localized electrical stimulation triggers cell-type-specific proliferation in biofilms.Colin J Comerci, Alan L Gillman, Leticia Galera-Laporta, Edgar Gutierrez, Alex Groisman, Joseph W Larkin, Jordi Garcia-Ojalvo, Gürol M SüelCell Systems2022-05-02
Blockade of organic anion transport in humans after treatment with the drug probenecid leads to major metabolic alterations in plasma and urine.Jeffry C Granados, Vibha Bhatnagar, Sanjay K NigamClinical Pharmacology And Therapeutics2022-05-01
DEPP: Deep Learning Enables Extending Species Trees using Single Genes.Yueyu Jiang, Metin Balaban, Qiyun Zhu, Siavash MirarabSystematic Biology2022-04-29
Outcomes and risk factors for death among hospitalized children and adolescents with kidney diseases and COVID-19: an analysis of a nationwide database.Mariana A Vasconcelos, Ana Carmen Q Mendonça, Enrico A Colosimo, Noureddin Nourbakhsh, Hercílio Martelli-Júnior, Ludmila R Silva, Maria Christina L Oliveira, Clara C Pinhati, Robert H Mak, Ana Cristina Simões E Silva, Eduardo A OliveiraPediatric Nephrology (Berlin, Germany)2022-04-29
Outcomes and risk factors of death among hospitalized children and adolescents with obesity and COVID-19 in Brazil: An analysis of a nationwide database.Ana Cristina Simões E Silva, Mariana A Vasconcelos, Enrico A Colosimo, Ana Carmen Q Mendonça, Hercílio Martelli-Júnior, Ludmila R Silva, Maria Christina L Oliveira, Clara C Pinhati, Robert H Mak, Eduardo A OliveiraPediatric Obesity2022-04-28
Effects of 'Healthy' Fecal Microbiota Transplantation against the Deterioration of Depression in Fawn-Hooded Rats.Bing Hu, Promi Das, Xianglin Lv, Meng Shi, Jiye Aa, Kun Wang, Liping Duan, Jack A Gilbert, Yong Nie, Xiao-Lei WuMSystems2022-04-28
Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype.Cameron Martino, Daniel McDonald, Kalen Cantrell, Amanda Hazel Dilmore, Yoshiki Vázquez-Baeza, Liat Shenhav, Justin P Shaffer, Gibraan Rahman, George Armstrong, Celeste Allaband, Se Jin Song, Rob KnightMSystems2022-04-28
Associations between maternal obesity and offspring gut microbiome in the first year of life.Stephanie P Gilley, Meghan L Ruebel, Clark Sims, Ying Zhong, Donald Turner, Renny S Lan, Lindsay M Pack, Brian D Piccolo, Sree V Chintapalli, Ann Abraham, Lars Bode, Aline Andres, Kartik ShankarPediatric Obesity2022-04-27
Intestinal homeostasis and inflammation: gut microbiota at the crossroads of pancreas-intestinal barrier axis.Zhongwei Zhang, Izumi Tanaka, Zhen Pan, Peter B Ernst, Hiroshi Kiyono, Yosuke KurashimaEuropean Journal Of Immunology2022-04-27
Systems biology approach to functionally assess the pangenome reveals genetic diversity with discriminatory power.Charles J Norsigian, Heather A Danhof, Colleen K Brand, Firas S Midani, Jared T Broddrick, Tor C Savidge, Robert A Britton, Bernhard O Palsson, Jennifer K Spinler, Jonathan M MonkProceedings Of The National Academy Of Sciences Of The United States Of America2022-04-27
Nutrient Gradients Mediate Complex Colony-Level Antibiotic Responses in Structured Microbial Populations.Mirjana Stevanovic, Thomas Boukéké-Lesplulier, Lukas Hupe, Jeff Hasty, Philip Bittihn, Daniel SchultzFrontiers In Microbiology2022-04-27
Machine-learning from Pseudomonas putida KT2440 transcriptomes reveals its transcriptional regulatory network.Hyun Gyu Lim, Kevin Rychel, Anand V Sastry, Gayle J Bentley, Joshua Mueller, Heidi S Schindel, Peter E Larsen, Philip D Laible, Adam M Guss, Wei Niu, Christopher W Johnson, Gregg T Beckham, Adam M Feist, Bernhard O PalssonMetabolic Engineering2022-04-27
Comparative Genomics of Synechococcus elongatus Explains the Phenotypic Diversity of the Strains.Marie Adomako, Dustin Ernst, Ryan Simkovsky, Yi-Yun Chao, Jingtong Wang, Mingxu Fang, Christiane Bouchier, Rocio Lopez-Igual, Didier Mazel, Muriel Gugger, Susan S GoldenMBio2022-04-27
FastViFi: Fast and accurate detection of (Hybrid) Viral DNA and RNA.Sara Javadzadeh, Utkrisht Rajkumar, Nam Nguyen, Shahab Sarmashghi, Jens Luebeck, Jingbo Shang, Vineet BafnaNAR Genomics And Bioinformatics2022-04-26
Antibiotic Activity Altered by Competitive Interactions Between Two Coral Reef-Associated Bacteria.Samantha J Mascuch, Alyssa Demko, Samson Viulu, Joape Ginigini, Katy Soapi, Paul Jensen, Julia KubanekMicrobial Ecology2022-04-23
foodMASST a mass spectrometry search tool for foods and beverages.Kiana A West, Robin Schmid, Julia M Gauglitz, Mingxun Wang, Pieter C DorresteinNPJ Science Of Food2022-04-20
Early microbial markers of periodontal and cardiometabolic diseases in ORIGINS.Clarisse Marotz, Rebecca Molinsky, Cameron Martino, Bruno Bohn, Sumith Roy, Michael Rosenbaum, Moïse Desvarieux, Melana Yuzefpolskaya, Bruce J Paster, David R Jacobs, Paolo C Colombo, Panos N Papapanou, Rob Knight, Ryan T DemmerNPJ Biofilms And Microbiomes2022-04-20
The impact of maternal asthma on the preterm infants' gut metabolome and microbiome (MAP study).Shiyu S Bai-Tong, Megan S Thoemmes, Kelly C Weldon, Diba Motazavi, Jessica Kitsen, Shalisa Hansen, Annalee Furst, Bob Geng, Se Jin Song, Jack A Gilbert, Lars Bode, Pieter C Dorrestein, Rob Knight, Sydney A Leibel, Sandra L LeibelScientific Reports2022-04-19
Memory B-Cell Development After Asymptomatic or Mild Symptomatic SARS-CoV-2 Infection.Yu Kato, Nathaniel I Bloom, Peifang Sun, Corey A Balinsky, Qi Qiu, Ying Cheng, Vihasi Jani, Megan A Schilling, Carl W Goforth, Dawn L Weir, Irene Ramos, Stuart C Sealfon, Andrew G Letizia, Shane CrottyThe Journal Of Infectious Diseases2022-04-17
Menopause Is Associated with an Altered Gut Microbiome and Estrobolome, with Implications for Adverse Cardiometabolic Risk in the Hispanic Community Health Study/Study of Latinos.Brandilyn A Peters, Juan Lin, Qibin Qi, Mykhaylo Usyk, Carmen R Isasi, Yasmin Mossavar-Rahmani, Carol A Derby, Nanette Santoro, Krista M Perreira, Martha L Daviglus, Michelle A Kominiarek, Jianwen Cai, Rob Knight, Robert D Burk, Robert C KaplanMSystems2022-04-13
Impact of Clopidogrel on Clinical Outcomes in Patients with Staphylococcus aureus Bacteremia: a National Retrospective Cohort Study.Aisling R Caffrey, Haley J Appaneal, Kerry L LaPlante, Vrishali V Lopes, Erlinda R Ulloa, Victor Nizet, George SakoulasAntimicrobial Agents And Chemotherapy2022-04-13
Symptom improvement with mirabegron treatment is associated with urobiome changes in adult women.Thomas Halverson, Elizabeth R Mueller, Linda Brubaker, Alan J WolfeInternational Urogynecology Journal2022-04-12
P53 deficiency affects cholesterol esterification to exacerbate hepatocarcinogenesis.Yahui Zhu, Li Gu, Xi Lin, Xinyi Zhou, Bingjun Lu, Cheng Liu, Yajun Li, Edward V Prochownik, Michael Karin, Fubing Wang, Youjun LiHepatology (Baltimore, Md.)2022-04-10
Unlocking capacities of genomics for the COVID-19 response and future pandemics.Sergey Knyazev, Karishma Chhugani, Varuni Sarwal, Ram Ayyala, Harman Singh, Smruthi Karthikeyan, Dhrithi Deshpande, Pelin Icer Baykal, Zoia Comarova, Angela Lu, Yuri Porozov, Tetyana I Vasylyeva, Joel O Wertheim, Braden T Tierney, Charles Y Chiu, Ren Sun, Aiping Wu, Malak S Abedalthagafi, Victoria M Pak, Shivashankar H Nagaraj, Adam L Smith, Pavel Skums, Bogdan Pasaniuc, Andrey Komissarov, Christopher E Mason, Eric Bortz, Philippe Lemey, Fyodor Kondrashov, Niko Beerenwinkel, Tommy Tsan-Yuk Lam, Nicholas C Wu, Alex Zelikovsky, Rob Knight, Keith A Crandall, Serghei MangulNature Methods2022-04-08
Mapping genomic loci implicates genes and synaptic biology in schizophrenia.Vassily Trubetskoy, Antonio F Pardiñas, Ting Qi, Georgia Panagiotaropoulou, Swapnil Awasthi, Tim B Bigdeli, Julien Bryois, Chia-Yen Chen, Charlotte A Dennison, Lynsey S Hall, Max Lam, Kyoko Watanabe, Oleksandr Frei, Tian Ge, Janet C Harwood, Frank Koopmans, Sigurdur Magnusson, Alexander L Richards, Julia Sidorenko, Yang Wu, Jian Zeng, Jakob Grove, Minsoo Kim, Zhiqiang Li, Georgios Voloudakis, Wen Zhang, Mark Adams, Ingrid Agartz, Elizabeth G Atkinson, Esben Agerbo, Mariam Al Eissa, Margot Albus, Madeline Alexander, Behrooz Z Alizadeh, Köksal Alptekin, Thomas D Als, Farooq Amin, Volker Arolt, Manuel Arrojo, Lavinia Athanasiu, Maria Helena Azevedo, Silviu A Bacanu, Nicholas J Bass, Martin Begemann, Richard A Belliveau, Judit Bene, Beben Benyamin, Sarah E Bergen, Giuseppe Blasi, Julio Bobes, Stefano Bonassi, Alice Braun, Rodrigo Affonseca Bressan, Evelyn J Bromet, Richard Bruggeman, Peter F Buckley, Randy L Buckner, Jonas Bybjerg-Grauholm, Wiepke Cahn, Murray J Cairns, Monica E Calkins, Vaughan J Carr, David Castle, Stanley V Catts, Kimberley D Chambert, Raymond C K Chan, Boris Chaumette, Wei Cheng, Eric F C Cheung, Siow Ann Chong, David Cohen, Angèle Consoli, Quirino Cordeiro, Javier Costas, Charles Curtis, Michael Davidson, Kenneth L Davis, Lieuwe de Haan, Franziska Degenhardt, Lynn E DeLisi, Ditte Demontis, Faith Dickerson, Dimitris Dikeos, Timothy Dinan, Srdjan Djurovic, Jubao Duan, Giuseppe Ducci, Frank Dudbridge, Johan G Eriksson, Lourdes Fañanás, Stephen V Faraone, Alessia Fiorentino, Andreas Forstner, Josef Frank, Nelson B Freimer, Menachem Fromer, Alessandra Frustaci, Ary Gadelha, Giulio Genovese, Elliot S Gershon, Marianna Giannitelli, Ina Giegling, Paola Giusti-Rodríguez, Stephanie Godard, Jacqueline I Goldstein, Javier González Peñas, Ana González-Pinto, Srihari Gopal, Jacob Gratten, Michael F Green, Tiffany A Greenwood, Olivier Guillin, Sinan Gülöksüz, Raquel E Gur, Ruben C Gur, Blanca Gutiérrez, Eric Hahn, Hakon Hakonarson, Vahram Haroutunian, Annette M Hartmann, Carol Harvey, Caroline Hayward, Frans A Henskens, Stefan Herms, Per Hoffmann, Daniel P Howrigan, Masashi Ikeda, Conrad Iyegbe, Inge Joa, Antonio Julià, Anna K Kähler, Tony Kam-Thong, Yoichiro Kamatani, Sena Karachanak-Yankova, Oussama Kebir, Matthew C Keller, Brian J Kelly, Andrey Khrunin, Sung-Wan Kim, Janis Klovins, Nikolay Kondratiev, Bettina Konte, Julia Kraft, Michiaki Kubo, Vaidutis Kučinskas, Zita Ausrele Kučinskiene, Agung Kusumawardhani, Hana Kuzelova-Ptackova, Stefano Landi, Laura C Lazzeroni, Phil H Lee, Sophie E Legge, Douglas S Lehrer, Rebecca Lencer, Bernard Lerer, Miaoxin Li, Jeffrey Lieberman, Gregory A Light, Svetlana Limborska, Chih-Min Liu, Jouko Lönnqvist, Carmel M Loughland, Jan Lubinski, Jurjen J Luykx, Amy Lynham, Milan Macek, Andrew Mackinnon, Patrik K E Magnusson, Brion S Maher, Wolfgang Maier, Dolores Malaspina, Jacques Mallet, Stephen R Marder, Sara Marsal, Alicia R Martin, Lourdes Martorell, Manuel Mattheisen, Robert W McCarley, Colm McDonald, John J McGrath, Helena Medeiros, Sandra Meier, Bela Melegh, Ingrid Melle, Raquelle I Mesholam-Gately, Andres Metspalu, Patricia T Michie, Lili Milani, Vihra Milanova, Marina Mitjans, Espen Molden, Esther Molina, María Dolores Molto, Valeria Mondelli, Carmen Moreno, Christopher P Morley, Gerard Muntané, Kieran C Murphy, Inez Myin-Germeys, Igor Nenadić, Gerald Nestadt, Liene Nikitina-Zake, Cristiano Noto, Keith H Nuechterlein, Niamh Louise O'Brien, F Anthony O'Neill, Sang-Yun Oh, Ann Olincy, Vanessa Kiyomi Ota, Christos Pantelis, George N Papadimitriou, Mara Parellada, Tiina Paunio, Renata Pellegrino, Sathish Periyasamy, Diana O Perkins, Bruno Pfuhlmann, Olli Pietiläinen, Jonathan Pimm, David Porteous, John Powell, Diego Quattrone, Digby Quested, Allen D Radant, Antonio Rampino, Mark H Rapaport, Anna Rautanen, Abraham Reichenberg, Cheryl Roe, Joshua L Roffman, Julian Roth, Matthias Rothermundt, Bart P F 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Sialoglycan binding patterns of bacterial AB toxin B subunits correlate with host range and toxicity, indicating evolution independent of A subunits.Naazneen Khan, Aniruddha Sasmal, Zahra Khedri, Patrick Secrest, Andrea Verhagen, Saurabh Srivastava, Nissi Varki, Xi Chen, Hai Yu, Travis Beddoe, Adrienne W Paton, James C Paton, Ajit VarkiThe Journal Of Biological Chemistry2022-04-07
Microbe Profile: : natural products and the evolution of a unique marine bacterium.Paul R JensenMicrobiology (Reading, England)2022-04-05
Involvement of Qa-1/HLA-E-Restricted CD8+ T Cells in Anti-Microbe and Anti-Cancer Immunity as Well as in Immune Regulation.Huiming Sheng, Suryasarathi Dasgupta, Vipin Chaturvedi KumarCritical Reviews In Immunology2022-04-05
Factors associated with COVID-19 vaccine intent among Latino SNAP participants in Southern California.Vanessa P Scott, Sarah Hiller-Venegas, Kate Edra, Joe Prickitt, Yesenia Esquivel, Blanca Melendrez, Kyung E RheeBMC Public Health2022-04-05
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy.Qiyun Zhu, Shi Huang, Antonio Gonzalez, Imran McGrath, Daniel McDonald, Niina Haiminen, George Armstrong, Yoshiki Vázquez-Baeza, Julian Yu, Justin Kuczynski, Gregory D Sepich-Poore, Austin D Swafford, Promi Das, Justin P Shaffer, Franck Lejzerowicz, Pedro Belda-Ferre, Aki S Havulinna, Guillaume Méric, Teemu Niiranen, Leo Lahti, Veikko Salomaa, Ho-Cheol Kim, Mohit Jain, Michael Inouye, Jack A Gilbert, Rob KnightMSystems2022-04-04
Simple and practical sialoglycan encoding system reveals vast diversity in nature and identifies a universal sialoglycan-recognizing probe derived from AB5 toxin B subunits.Aniruddha Sasmal, Naazneen Khan, Zahra Khedri, Benjamin P Kellman, Saurabh Srivastava, Andrea Verhagen, Hai Yu, Anders Bech Bruntse, Sandra Diaz, Nissi Varki, Travis Beddoe, Adrienne W Paton, James C Paton, Xi Chen, Nathan E Lewis, Ajit VarkiGlycobiology2022-04-04
Intestinal virome in patients with alcohol use disorder and after abstinence.Cynthia L Hsu, Xinlian Zhang, Lu Jiang, Sonja Lang, Phillipp Hartmann, David Pride, Derrick E Fouts, Peter Stärkel, Bernd SchnablHepatology Communications2022-04-02
Complete genomic and epigenetic maps of human centromeres.Nicolas Altemose, Glennis A Logsdon, Andrey V Bzikadze, Pragya Sidhwani, Sasha A Langley, Gina V Caldas, Savannah J Hoyt, Lev Uralsky, Fedor D Ryabov, Colin J Shew, Michael E G Sauria, Matthew Borchers, Ariel Gershman, Alla Mikheenko, Valery A Shepelev, Tatiana Dvorkina, Olga Kunyavskaya, Mitchell R Vollger, Arang Rhie, Ann M McCartney, Mobin Asri, Ryan Lorig-Roach, Kishwar Shafin, Julian K Lucas, Sergey Aganezov, Daniel Olson, Leonardo Gomes de Lima, Tamara Potapova, Gabrielle A Hartley, Marina Haukness, Peter Kerpedjiev, Fedor Gusev, Kristof Tigyi, Shelise Brooks, Alice Young, Sergey Nurk, Sergey Koren, Sofie R Salama, Benedict Paten, Evgeny I Rogaev, Aaron Streets, Gary H Karpen, Abby F Dernburg, Beth A Sullivan, Aaron F Straight, Travis J Wheeler, Jennifer L Gerton, Evan E Eichler, Adam M Phillippy, Winston Timp, Megan Y Dennis, Rachel J O'Neill, Justin M Zook, Michael C Schatz, Pavel A Pevzner, Mark Diekhans, Charles H Langley, Ivan A Alexandrov, Karen H MigaScience (New York, N.Y.)2022-04-01
The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients.Carlos G Gonzalez, Robert H Mills, Melissa C Kordahi, Marvic Carrillo-Terrazas, Henrry Secaira-Morocho, Christella E Widjaja, Matthew S Tsai, Yash Mittal, Brian A Yee, Fernando Vargas, Kelly Weldon, Julia M Gauglitz, Clara Delaroque, Consuelo Sauceda, Leigh-Ana Rossitto, Gail Ackermann, Gregory Humphrey, Austin D Swafford, Corey A Siegel, Jay C Buckey, Laura E Raffals, Charlotte Sadler, Peter Lindholm, Kathleen M Fisch, Mark Valaseck, Arief Suriawinata, Gene W Yeo, Pradipta Ghosh, John T Chang, Hiutung Chu, Pieter Dorrestein, Qiyun Zhu, Benoit Chassaing, Rob Knight, David J Gonzalez, Parambir S DulaiCellular And Molecular Gastroenterology And Hepatology2022-04-01
Preserved SARS-CoV-2 Vaccine Cell-Mediated Immunogenicity in Patients With Inflammatory Bowel Disease on Immune-Modulating Therapies.Brigid S Boland, Benjamin Goodwin, Zeli Zhang, Nathaniel Bloom, Yu Kato, Jennifer Neill, Helen Le, Tiffani Tysl, Angelina E Collins, Parambir S Dulai, Siddharth Singh, Nghia H Nguyen, Alba Grifoni, Alessandro Sette, Daniela Weiskopf, John T Chang, Jennifer M DanClinical And Translational Gastroenterology2022-04-01
Mistaken MIS-C: A Case Series of Bacterial Enteritis Mimicking MIS-C.Zephyr D Dworsky, Jordan E Roberts, Mary Beth F Son, Adriana H Tremoulet, Jane W Newburger, Jane C BurnsThe Pediatric Infectious Disease Journal2022-04-01
Machine learning from Pseudomonas aeruginosa transcriptomes identifies independently modulated sets of genes associated with known transcriptional regulators.Akanksha Rajput, Hannah Tsunemoto, Anand V Sastry, Richard Szubin, Kevin Rychel, Joseph Sugie, Joe Pogliano, Bernhard O PalssonNucleic Acids Research2022-03-31
The complete sequence of a human genome.Sergey Nurk, Sergey Koren, Arang Rhie, Mikko Rautiainen, Andrey V Bzikadze, Alla Mikheenko, Mitchell R Vollger, Nicolas Altemose, Lev Uralsky, Ariel Gershman, Sergey Aganezov, Savannah J Hoyt, Mark Diekhans, Glennis A Logsdon, Michael Alonge, Stylianos E Antonarakis, Matthew Borchers, Gerard G Bouffard, Shelise Y Brooks, Gina V Caldas, Nae-Chyun Chen, Haoyu Cheng, Chen-Shan Chin, William Chow, Leonardo G de Lima, Philip C Dishuck, Richard Durbin, Tatiana Dvorkina, Ian T Fiddes, Giulio Formenti, Robert S Fulton, Arkarachai Fungtammasan, Erik Garrison, Patrick G S Grady, Tina A Graves-Lindsay, Ira M Hall, Nancy F Hansen, Gabrielle A Hartley, Marina Haukness, Kerstin Howe, Michael W Hunkapiller, Chirag Jain, Miten Jain, Erich D Jarvis, Peter Kerpedjiev, Melanie Kirsche, Mikhail Kolmogorov, Jonas Korlach, Milinn Kremitzki, Heng Li, Valerie V Maduro, Tobias Marschall, Ann M McCartney, Jennifer McDaniel, Danny E Miller, James C Mullikin, Eugene W Myers, Nathan D Olson, Benedict Paten, Paul Peluso, Pavel A Pevzner, David Porubsky, Tamara Potapova, Evgeny I Rogaev, Jeffrey A Rosenfeld, Steven L Salzberg, Valerie A Schneider, Fritz J Sedlazeck, Kishwar Shafin, Colin J Shew, Alaina Shumate, Ying Sims, Arian F A Smit, Daniela C Soto, Ivan Sović, Jessica M Storer, Aaron Streets, Beth A Sullivan, Françoise Thibaud-Nissen, James Torrance, Justin Wagner, Brian P Walenz, Aaron Wenger, Jonathan M D Wood, Chunlin Xiao, Stephanie M Yan, Alice C Young, Samantha Zarate, Urvashi Surti, Rajiv C McCoy, Megan Y Dennis, Ivan A Alexandrov, Jennifer L Gerton, Rachel J O'Neill, Winston Timp, Justin M Zook, Michael C Schatz, Evan E Eichler, Karen H Miga, Adam M PhillippyScience (New York, N.Y.)2022-03-31
Obesity alters pathology and treatment response in inflammatory disease.Sagar P Bapat, Caroline Whitty, Cody T Mowery, Yuqiong Liang, Arum Yoo, Zewen Jiang, Michael C Peters, Ling-Juan Zhang, Ian Vogel, Carmen Zhou, Vinh Q Nguyen, Zhongmei Li, Christina Chang, Wandi S Zhu, Annette T Hastie, Helen He, Xin Ren, Wenli Qiu, Sarah G Gayer, Chang Liu, Eun Jung Choi, Marlys Fassett, Jarish N Cohen, Jamie L Sturgill, Laura E Crotty Alexander, Jae Myoung Suh, Christopher Liddle, Annette R Atkins, Ruth T Yu, Michael Downes, Sihao Liu, Barbara S Nikolajczyk, In-Kyu Lee, Emma Guttman-Yassky, K Mark Ansel, Prescott G Woodruff, John V Fahy, Dean Sheppard, Richard L Gallo, Chun Jimmie Ye, Ronald M Evans, Ye Zheng, Alexander MarsonNature2022-03-30
Metabolic Profiling of Interspecies Interactions During Sessile Bacterial Cultivation Reveals Growth and Sporulation Induction in in Response to .Jakob Herschend, Madeleine Ernst, Klaus Koren, Alexey V Melnik, Ricardo R da Silva, Henriette L Røder, Zacharias B V Damholt, Per Hägglund, Birte Svensson, Søren J Sørensen, Michael Kühl, Pieter C Dorrestein, Mette BurmølleFrontiers In Cellular And Infection Microbiology2022-03-29
Synthetic 3'-UTR valves for optimal metabolic flux control in Escherichia coli.Donghui Choe, Kangsan Kim, Minjeong Kang, Seung-Goo Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan ChoNucleic Acids Research2022-03-29
Risk factors for COVID-19-related mortality in hospitalized children and adolescents with diabetes mellitus: An observational retrospective cohort study.Eduardo A Oliveira, Robert H Mak, Enrico A Colosimo, Ana Carmen Q Mendonça, Mariana A Vasconcelos, Hercílio Martelli-Júnior, Ludmila R Silva, Maria Christina L Oliveira, Clara C Pinhati, Ana Cristina Simões E SilvaPediatric Diabetes2022-03-27
The ViReflow pipeline enables user friendly large scale viral consensus genome reconstruction.Niema Moshiri, Kathleen M Fisch, Amanda Birmingham, Peter DeHoff, Gene W Yeo, Kristen Jepsen, Louise C Laurent, Rob KnightScientific Reports2022-03-24
High Sensitivity, Rapid Detection of Virus in High Traffic Environments.Lauren Waller, Zhilin Guo, Rui Tang, Zunming Zhang, Edward Wang, Jarred Yasuhara-Bell, Louise Laurent, Yu-Hwa LoFrontiers In Bioengineering And Biotechnology2022-03-24
Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq.Sara E Vazquez, Sabrina A Mann, Aaron Bodansky, Andrew F Kung, Zoe Quandt, Elise M N Ferré, Nils Landegren, Daniel Eriksson, Paul Bastard, Shen-Ying Zhang, Jamin Liu, Anthea Mitchell, Caleigh Mandel-Brehm, Brenda Miao, Gavin Sowa, Kelsey Zorn, Alice Y Chan, Chisato Shimizu, Adriana Tremoulet, Kara Lynch, Michael R Wilson, Olle Kampe, Kerry Dobbs, Ottavia M Delmonte, Luigi D Notarangelo, Jane C Burns, Jean-Laurent Casanova, Michail S Lionakis, Troy R Torgerson, Mark S Anderson, Joseph L DeRisiBioRxiv : The Preprint Server For Biology2022-03-24
Potent Activity of Ertapenem Plus Cefazolin Within Staphylococcal Biofilms: A Contributing Factor in the Treatment of Methicillin-Susceptible Endocarditis.Jessica Gilbertie, Erlinda R Ulloa, Jennifer C Daiker, Khanh Nguyen, Dan Smelter, Warren Rose, Matthew Geriak, Lauren V Schnabel, Victor Nizet, George SakoulasOpen Forum Infectious Diseases2022-03-23
Early prediction of incident liver disease using conventional risk factors and gut-microbiome-augmented gradient boosting.Yang Liu, Guillaume Méric, Aki S Havulinna, Shu Mei Teo, Fredrik Åberg, Matti Ruuskanen, Jon Sanders, Qiyun Zhu, Anupriya Tripathi, Karin Verspoor, Susan Cheng, Mohit Jain, Pekka Jousilahti, Yoshiki Vázquez-Baeza, Rohit Loomba, Leo Lahti, Teemu Niiranen, Veikko Salomaa, Rob Knight, Michael InouyeCell Metabolism2022-03-22
Microbiomes of Hadal Fishes across Trench Habitats Contain Similar Taxa and Known Piezophiles.Jessica M Blanton, Logan M Peoples, Mackenzie E Gerringer, Caroline M Iacuaniello, Natalya D Gallo, Thomas D Linley, Alan J Jamieson, Jeffrey C Drazen, Douglas H Bartlett, Eric E AllenMSphere2022-03-21
Machine Learning of All Mycobacterium tuberculosis H37Rv RNA-seq Data Reveals a Structured Interplay between Metabolism, Stress Response, and Infection.Reo Yoo, Kevin Rychel, Saugat Poudel, Tahani Al-Bulushi, Yuan Yuan, Siddharth Chauhan, Cameron Lamoureux, Bernhard O Palsson, Anand SastryMSphere2022-03-21
PI3K-α/mTOR/BRD4 inhibitor alone or in combination with other anti-virals blocks replication of SARS-CoV-2 and its variants of concern including Delta and Omicron.Arpan Acharya, Anup S Pathania, Kabita Pandey, Michellie Thurman, Kendra R Vann, Tatiana G Kutateladze, Kishore B Challagundala, Donald L Durden, Siddappa N ByrareddyClinical And Translational Medicine2022-03-20
Correction to: Precision medicine in perinatal depression in light of the human microbiome.Beatriz Peñalver Bernabé, Pauline M Maki, Shannon M Dowty, Mariana Lauren Cralle Salas, Zainab Shah, Jack A GilbertPsychopharmacology2022-03-18
Age-associated impairment of T cell immunity is linked to sex-dimorphic elevation of N-glycan branching.Haik Mkhikian, Ken L Hayama, Khachik Khachikyan, Carey Li, Raymond W Zhou, Judy Pawling, Suzi Klaus, Phuong Q N Tran, Kim M Ly, Andrew D Gong, Hayk Saryan, Jasper L Hai, David Grigoryan, Philip L Lee, Barbara L Newton, Manuela Raffatellu, James W Dennis, Michael DemetriouNature Aging2022-03-18
Global urban environmental change drives adaptation in white clover.James S Santangelo, Rob W Ness, Beata Cohan, Connor R Fitzpatrick, Simon G Innes, Sophie Koch, Lindsay S Miles, Samreen Munim, Pedro R Peres-Neto, Cindy Prashad, Alex T Tong, Windsor E Aguirre, Philips O Akinwole, Marina Alberti, Jackie Álvarez, Jill T Anderson, Joseph J Anderson, Yoshino Ando, Nigel R Andrew, Fabio Angeoletto, Daniel N Anstett, Julia Anstett, Felipe Aoki-Gonçalves, A Z Andis Arietta, Mary T K Arroyo, Emily J Austen, Fernanda Baena-Díaz, Cory A Barker, Howard A Baylis, Julia M Beliz, Alfonso Benitez-Mora, David Bickford, Gabriela Biedebach, Gwylim S Blackburn, Mannfred M A Boehm, Stephen P Bonser, Dries Bonte, Jesse R Bragger, Cristina Branquinho, Kristien I Brans, Jorge C Bresciano, Peta D Brom, Anna Bucharova, Briana Burt, James F Cahill, Katelyn D Campbell, Elizabeth J Carlen, Diego Carmona, Maria Clara Castellanos, Giada Centenaro, Izan Chalen, Jaime A Chaves, Mariana Chávez-Pesqueira, Xiao-Yong 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What If Not All Metabolites from the Uremic Toxin Generating Pathways Are Toxic? A Hypothesis.Raymond Vanholder, Sanjay K Nigam, Stéphane Burtey, Griet GlorieuxToxins2022-03-17
Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases.George Armstrong, Cameron Martino, Justin Morris, Behnam Khaleghi, Jaeyoung Kang, Jeff DeReus, Qiyun Zhu, Daniel Roush, Daniel McDonald, Antonio Gonazlez, Justin P Shaffer, Carolina Carpenter, Mehrbod Estaki, Stephen Wandro, Sean Eilert, Ameen Akel, Justin Eno, Ken Curewitz, Austin D Swafford, Niema Moshiri, Tajana Rosing, Rob KnightMSystems2022-03-16
Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides.Gajender Aleti, Jordan N Kohn, Emily A Troyer, Kelly Weldon, Shi Huang, Anupriya Tripathi, Pieter C Dorrestein, Austin D Swafford, Rob Knight, Suzi HongBMC Microbiology2022-03-14
Autoantibodies Against Proteins Previously Associated With Autoimmunity in Adult and Pediatric Patients With COVID-19 and Children With MIS-C.Peter D Burbelo, Riccardo Castagnoli, Chisato Shimizu, Ottavia M Delmonte, Kerry Dobbs, Valentina Discepolo, Andrea Lo Vecchio, Alfredo Guarino, Francesco Licciardi, Ugo Ramenghi, Emma Rey-Jurado, Cecilia Vial, Gian Luigi Marseglia, Amelia Licari, Daniela Montagna, Camillo Rossi, Gina A Montealegre Sanchez, Karyl Barron, Blake M Warner, John A Chiorini, Yazmin Espinosa, Loreani Noguera, Lesia Dropulic, Meng Truong, Dana Gerstbacher, Sayonara Mató, John Kanegaye, Adriana H Tremoulet, , Eli M Eisenstein, Helen C Su, Luisa Imberti, Maria Cecilia Poli, Jane C Burns, Luigi D Notarangelo, Jeffrey I CohenFrontiers In Immunology2022-03-11
Structure and Candidate Biosynthetic Gene Cluster of a Manumycin-Type Metabolite from .Gabriel Castro-Falcón, Kaitlin E Creamer, Alexander B Chase, Min Cheol Kim, Douglas Sweeney, Evgenia Glukhov, William Fenical, Paul R JensenJournal Of Natural Products2022-03-09
Cancer's second genome: Microbial cancer diagnostics and redefining clonal evolution as a multispecies process: Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution: Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution.Gregory D Sepich-Poore, Caitlin Guccione, Lucie Laplane, Thomas Pradeu, Kit Curtius, Rob KnightBioEssays : News And Reviews In Molecular, Cellular And Developmental Biology2022-03-06
Human Milk Oligosaccharides and Bacterial Profile Modulate Infant Body Composition during Exclusive Breastfeeding.Ali S Cheema, Zoya Gridneva, Annalee J Furst, Ana S Roman, Michelle L Trevenen, Berwin A Turlach, Ching T Lai, Lisa F Stinson, Lars Bode, Matthew S Payne, Donna T GeddesInternational Journal Of Molecular Sciences2022-03-05
Exclusively Breastfed Infant Microbiota Develops over Time and Is Associated with Human Milk Oligosaccharide Intakes.Ali Sadiq Cheema, Michelle Louise Trevenen, Berwin Ashoka Turlach, Annalee June Furst, Ana Sophia Roman, Lars Bode, Zoya Gridneva, Ching Tat Lai, Lisa Faye Stinson, Matthew Scott Payne, Donna Tracy GeddesInternational Journal Of Molecular Sciences2022-03-03
Landscape of HIV neutralization susceptibilities across tissue reservoirs.Chuangqi Wang, Timothy E Schlub, Wen-Han Yu, C Sabrina Tan, Karl Stefic, Sara Gianella, Davey M Smith, Douglas A Lauffenburger, Antoine Chaillon, Boris JulgClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2022-03-02
Detection of COVID-19 using multimodal data from a wearable device: results from the first TemPredict Study.Ashley E Mason, Frederick M Hecht, Shakti K Davis, Joseph L Natale, Wendy Hartogensis, Natalie Damaso, Kajal T Claypool, Stephan Dilchert, Subhasis Dasgupta, Shweta Purawat, Varun K Viswanath, Amit Klein, Anoushka Chowdhary, Sarah M Fisher, Claudine Anglo, Karena Y Puldon, Danou Veasna, Jenifer G Prather, Leena S Pandya, Lindsey M Fox, Michael Busch, Casey Giordano, Brittany K Mercado, Jining Song, Rafael Jaimes, Brian S Baum, Brian A Telfer, Casandra W Philipson, Paula P Collins, Adam A Rao, Edward J Wang, Rachel H Bandi, Bianca J Choe, Elissa S Epel, Stephen K Epstein, Joanne B Krasnoff, Marco B Lee, Shi-Wen Lee, Gina M Lopez, Arpan Mehta, Laura D Melville, Tiffany S Moon, Lilianne R Mujica-Parodi, Kimberly M Noel, Michael A Orosco, Jesse M Rideout, Janet D Robishaw, Robert M Rodriguez, Kaushal H Shah, Jonathan H Siegal, Amarnath Gupta, Ilkay Altintas, Benjamin L SmarrScientific Reports2022-03-02
Immune Response of an Oral Phage Cocktail in a Mouse Model of Ethanol-Induced Liver Disease.Beatriz Garcia Mendes, Yi Duan, Bernd SchnablViruses2022-02-27
System-Level Analysis of Transcriptional and Translational Regulatory Elements in .Soonkyu Hwang, Namil Lee, Donghui Choe, Yongjae Lee, Woori Kim, Ji Hun Kim, Gahyeon Kim, Hyeseong Kim, Neung-Ho Ahn, Byoung-Hee Lee, Bernhard O Palsson, Byung-Kwan ChoFrontiers In Bioengineering And Biotechnology2022-02-25
The Microbiota-Gut-Brain Axis in Alzheimer's Disease: A Review of Taxonomic Alterations and Potential Avenues for Interventions.Emily R Murray, Mylon Kemp, Tanya T NguyenArchives Of Clinical Neuropsychology : The Official Journal Of The National Academy Of Neuropsychologists2022-02-24
Applications and Comparison of Dimensionality Reduction Methods for Microbiome Data.George Armstrong, Gibraan Rahman, Cameron Martino, Daniel McDonald, Antonio Gonzalez, Gal Mishne, Rob KnightFrontiers In Bioinformatics2022-02-24
viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data.Dmitry Antipov, Mikhail Rayko, Mikhail Kolmogorov, Pavel A PevznerGenome Biology2022-02-21
Deoxyvasicinone with Anti-Melanogenic Activity from Marine-Derived sp. CNQ-617.Se-Eun Lee, Min-Ju Kim, Prima F Hillman, Dong-Chan Oh, William Fenical, Sang-Jip Nam, Kyung-Min LimMarine Drugs2022-02-21
Viral protein instability enhances host-range evolvability.Hannah M Strobel, Elijah K Horwitz, Justin R MeyerPLoS Genetics2022-02-17
Intestinal secretory mechanisms and diarrhea.Stephen Joseph Keely, Kim E BarrettAmerican Journal Of Physiology. Gastrointestinal And Liver Physiology2022-02-16
Antimicrobial production by perifollicular dermal preadipocytes is essential to the pathophysiology of acne.Alan M O'Neill, Marc C Liggins, Jason S Seidman, Tran H Do, Fengwu Li, Kellen J Cavagnero, Tatsuya Dokoshi, Joyce Y Cheng, Faiza Shafiq, Tissa R Hata, Johann E Gudjonsson, Robert L Modlin, Richard L GalloScience Translational Medicine2022-02-16
Higher buccal mitochondrial DNA and mitochondrial common deletion number are associated with markers of neurodegeneration and inflammation in cerebrospinal fluid.Dipesh Solanky, Jerel A Fields, Jennifer E Iudicello, Ronald J Ellis, Donald Franklin, David B Clifford, Benjamin B Gelman, Christina M Marra, Susan Morgello, Leah H Rubin, Igor Grant, Robert K Heaton, Scott L Letendre, Sanjay R MehtaJournal Of Neurovirology2022-02-14
A gut-derived metabolite alters brain activity and anxiety behaviour in mice.Brittany D Needham, Masanori Funabashi, Mark D Adame, Zhuo Wang, Joseph C Boktor, Jillian Haney, Wei-Li Wu, Claire Rabut, Mark S Ladinsky, Son-Jong Hwang, Yumei Guo, Qiyun Zhu, Jessica A Griffiths, Rob Knight, Pamela J Bjorkman, Mikhail G Shapiro, Daniel H Geschwind, Daniel P Holschneider, Michael A Fischbach, Sarkis K MazmanianNature2022-02-14
Adaptive laboratory evolution in S. cerevisiae highlights role of transcription factors in fungal xenobiotic resistance.Sabine Ottilie, Madeline R Luth, Erich Hellemann, Gregory M Goldgof, Eddy Vigil, Prianka Kumar, Andrea L Cheung, Miranda Song, Karla P Godinez-Macias, Krypton Carolino, Jennifer Yang, Gisel Lopez, Matthew Abraham, Maureen Tarsio, Emmanuelle LeBlanc, Luke Whitesell, Jake Schenken, Felicia Gunawan, Reysha Patel, Joshua Smith, Melissa S Love, Roy M Williams, Case W McNamara, William H Gerwick, Trey Ideker, Yo Suzuki, Dyann F Wirth, Amanda K Lukens, Patricia M Kane, Leah E Cowen, Jacob D Durrant, Elizabeth A WinzelerCommunications Biology2022-02-11
From Tryptophan to Toxin: Nature's Convergent Biosynthetic Strategy to Aetokthonotoxin.Sanjoy Adak, April L Lukowski, Rebecca J B Schäfer, Bradley S MooreJournal Of The American Chemical Society2022-02-10
Efficient in vitro and in vivo RNA editing via recruitment of endogenous ADARs using circular guide RNAs.Dhruva Katrekar, James Yen, Yichen Xiang, Anushka Saha, Dario Meluzzi, Yiannis Savva, Prashant MaliNature Biotechnology2022-02-10
Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA.Erik N Bergstrom, Jens Luebeck, Mia Petljak, Azhar Khandekar, Mark Barnes, Tongwu Zhang, Christopher D Steele, Nischalan Pillay, Maria Teresa Landi, Vineet Bafna, Paul S Mischel, Reuben S Harris, Ludmil B AlexandrovNature2022-02-09
Machine Learning Predicts Biogeochemistry from Microbial Community Structure in a Complex Model System.Avishek Dutta, Thomas Goldman, Jeffrey Keating, Ellen Burke, Nicole Williamson, Reinhard Dirmeier, Jeff S BowmanMicrobiology Spectrum2022-02-09
Development of a T cell-based immunodiagnostic system to effectively distinguish SARS-CoV-2 infection and COVID-19 vaccination status.Esther Dawen Yu, Eric Wang, Emily Garrigan, Benjamin Goodwin, Aaron Sutherland, Alison Tarke, James Chang, Rosa Isela Gálvez, Jose Mateus, Sydney I Ramirez, Stephen A Rawlings, Davey M Smith, Gilberto Filaci, April Frazier, Daniela Weiskopf, Jennifer M Dan, Shane Crotty, Alba Grifoni, Alessandro Sette, Ricardo da Silva AntunesCell Host & Microbe2022-02-08
Targeted isolation of panels of diverse human protective broadly neutralizing antibodies against SARS-like viruses.Wan-Ting He, Rami Musharrafieh, Ge Song, Katharina Dueker, Longping V Tse, David R Martinez, Alexandra Schäfer, Sean Callaghan, Peter Yong, Nathan Beutler, Jonathan L Torres, Reid M Volk, Panpan Zhou, Meng Yuan, Hejuni Liu, Fabio Anzanello, Tazio Capozzola, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, Ian A Wilson, Yana Safonova, Andrew B Ward, Thomas F Rogers, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees AndrabiBioRxiv : The Preprint Server For Biology2022-02-08
A human antibody reveals a conserved site on beta-coronavirus spike proteins and confers protection against SARS-CoV-2 infection.Panpan Zhou, Meng Yuan, Ge Song, Nathan Beutler, Namir Shaabani, Deli Huang, Wan-Ting He, Xueyong Zhu, Sean Callaghan, Peter Yong, Fabio Anzanello, Linghang Peng, James Ricketts, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, David Nemazee, John R Teijaro, Thomas F Rogers, Ian A Wilson, Dennis R Burton, Raiees AndrabiScience Translational Medicine2022-02-08
Regulatory perturbations of ribosome allocation in bacteria reshape the growth proteome with a trade-off in adaptation capacity.David Hidalgo, César A Martínez-Ortiz, Bernhard O Palsson, José I Jiménez, José UtrillaIScience2022-02-07
Altered Carbon Partitioning Enhances CO to Terpene Conversion in Cyanobacteria.Man Li, Bin Long, Susie Y Dai, James W Golden, Xin Wang, Joshua S YuanBiodesign Research2022-02-07
Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.Youwen Qin, Aki S Havulinna, Yang Liu, Pekka Jousilahti, Scott C Ritchie, Alex Tokolyi, Jon G Sanders, Liisa Valsta, Marta Brożyńska, Qiyun Zhu, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Rohit Loomba, Susan Cheng, Mohit Jain, Teemu Niiranen, Leo Lahti, Rob Knight, Veikko Salomaa, Michael Inouye, Guillaume MéricNature Genetics2022-02-03
A potentially probiotic strain of Enterococcus faecalis from human milk that is avirulent, antibiotic sensitive, and nonbreaching of the gut barrier.Jasia Anjum, Arsalan Zaidi, Kim Barrett, Muhammad TariqArchives Of Microbiology2022-02-02
Flux balance analysis of the ammonia-oxidizing bacterium Nitrosomonas europaea ATCC19718 unravels specific metabolic activities while degrading toxic compounds.Gabriela Canto-Encalada, Diego Tec-Campos, Juan D Tibocha-Bonilla, Karsten Zengler, Alejandro Zepeda, Cristal ZuñigaPLoS Computational Biology2022-02-02
Salmonella respiration turns the tables on propionate.Gregory T Walker, Manuela RaffatelluTrends In Microbiology2022-02-02
Editorial: Mast Cells: Bridging Host-Microorganism Interactions.Rommel Chacón-Salinas, Anna Di Nardo, Soman N AbrahamFrontiers In Immunology2022-01-31
Gut Microbiome Composition Is Predictive of Incident Type 2 Diabetes in a Population Cohort of 5,572 Finnish Adults.Matti O Ruuskanen, Pande P Erawijantari, Aki S Havulinna, Yang Liu, Guillaume Méric, Jaakko Tuomilehto, Michael Inouye, Pekka Jousilahti, Veikko Salomaa, Mohit Jain, Rob Knight, Leo Lahti, Teemu J NiiranenDiabetes Care2022-01-31
Using All Our Genomes: Blood-based Liquid Biopsies for the Early Detection of Cancer.Eddie Adams, Gregory D Sepich-Poore, Sandrine Miller-Montgomery, Rob KnightView (Beijing, China)2022-01-31
Identification of Leucinostatins from sp. as Antiparasitic Agents against .Jean A Bernatchez, Yun-Seo Kil, Elany Barbosa da Silva, Diane Thomas, Laura-Isobel McCall, Karen L Wendt, Julia M Souza, Jasmin Ackermann, James H McKerrow, Robert H Cichewicz, Jair L Siqueira-NetoACS Omega2022-01-28
Leapfrog dynamics in phage-bacteria coevolution revealed by joint analysis of cross-infection phenotypes and whole genome sequencing.Animesh Gupta, Shengyun Peng, Chung Yin Leung, Joshua M Borin, Sarah J Medina, Joshua S Weitz, Justin R MeyerEcology Letters2022-01-28
Accumulation of microbial DNAs promotes to islet inflammation and β cell abnormalities in obesity in mice.Hong Gao, Zhenlong Luo, Yudong Ji, Kechun Tang, Zhongmou Jin, Crystal Ly, Dorothy D Sears, Sushil Mahata, Wei YingNature Communications2022-01-28
Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity.Robert H Mills, Parambir S Dulai, Yoshiki Vázquez-Baeza, Consuelo Sauceda, Noëmie Daniel, Romana R Gerner, Lakshmi E Batachari, Mario Malfavon, Qiyun Zhu, Kelly Weldon, Greg Humphrey, Marvic Carrillo-Terrazas, Lindsay DeRight Goldasich, MacKenzie Bryant, Manuela Raffatellu, Robert A Quinn, Andrew T Gewirtz, Benoit Chassaing, Hiutung Chu, William J Sandborn, Pieter C Dorrestein, Rob Knight, David J GonzalezNature Microbiology2022-01-27
Predicting fungal infection rate and severity with skin-associated microbial communities on amphibians.Melissa Y Chen, Jordan G Kueneman, Antonio González, Greg Humphrey, Rob Knight, Valerie J McKenzieMolecular Ecology2022-01-25
Interactions between human milk oligosaccharides, microbiota and immune factors in milk of women with and without mastitis.Irma Castro, Cristina García-Carral, Annalee Furst, Sadaf Khwajazada, Janneiry García, Rebeca Arroyo, Lorena Ruiz, Juan M Rodríguez, Lars Bode, Leónides FernándezScientific Reports2022-01-25
SARS-CoV-2 vaccination induces immunological T cell memory able to cross-recognize variants from Alpha to Omicron.Alison Tarke, Camila H Coelho, Zeli Zhang, Jennifer M Dan, Esther Dawen Yu, Nils Methot, Nathaniel I Bloom, Benjamin Goodwin, Elizabeth Phillips, Simon Mallal, John Sidney, Gilberto Filaci, Daniela Weiskopf, Ricardo da Silva Antunes, Shane Crotty, Alba Grifoni, Alessandro SetteCell2022-01-24
Stenotrophomonas maltophilia in patients with bronchiectasis: An analysis of the US bronchiectasis and NTM Research Registry.Mark L Metersky, Radmila Choate, Timothy R Aksamit, Douglas Conrad, Nicole C Lapinel, Diego J Maselli, Pamela J McShaneRespiratory Medicine2022-01-24
Colesevelam ameliorates non-alcoholic steatohepatitis and obesity in mice.Phillipp Hartmann, Yi Duan, Yukiko Miyamoto, Münevver Demir, Sonja Lang, Elda Hasa, Patrick Stern, Dennis Yamashita, Mary Conrad, Lars Eckmann, Bernd SchnablHepatology International2022-01-24
Genome-scale analysis of genetic regulatory elements in Streptomyces avermitilis MA-4680 using transcript boundary information.Yongjae Lee, Namil Lee, Soonkyu Hwang, Woori Kim, Suhyung Cho, Bernhard O Palsson, Byung-Kwan ChoBMC Genomics2022-01-21
Isolation and characterization of Streptomyces bacteriophages and Streptomyces strains encoding biosynthetic arsenals.Elizabeth T Montaño, Jason F Nideffer, Lauren Brumage, Marcella Erb, Julia Busch, Lynley Fernandez, Alan I Derman, John Paul Davis, Elena Estrada, Sharon Fu, Danielle Le, Aishwarya Vuppala, Cassidy Tran, Elaine Luterstein, Shivani Lakkaraju, Sriya Panchagnula, Caroline Ren, Jennifer Doan, Sharon Tran, Jamielyn Soriano, Yuya Fujita, Pranathi Gutala, Quinn Fujii, Minda Lee, Anthony Bui, Carleen Villarreal, Samuel R Shing, Sean Kim, Danielle Freeman, Vipula Racha, Alicia Ho, Prianka Kumar, Kian Falah, Thomas Dawson, Eray Enustun, Amy Prichard, Ana Gomez, Kanika Khanna, Shelly Trigg, Kit Pogliano, Joe PoglianoPloS One2022-01-21
Ethical Considerations for Gene Drive: Challenges of Balancing Inclusion, Power and Perspectives.Ana Kormos, Gregory C Lanzaro, Ethan Bier, Vanilson Santos, Lodney Nazaré, João Pinto, Adionilde Aguiar Dos Santos, Anthony A JamesFrontiers In Bioengineering And Biotechnology2022-01-21
A human antibody reveals a conserved site on beta-coronavirus spike proteins and confers protection against SARS-CoV-2 infection.Panpan Zhou, Meng Yuan, Ge Song, Nathan Beutler, Namir Shaabani, Deli Huang, Wan-Ting He, Xueyong Zhu, Sean Callaghan, Peter Yong, Fabio Anzanello, Linghang Peng, James Ricketts, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, David Nemazee, John R Teijaro, Thomas F Rogers, Ian A Wilson, Dennis R Burton, Raiees AndrabiBioRxiv : The Preprint Server For Biology2022-01-21
No infectious SARS-CoV-2 in breast milk from a cohort of 110 lactating women.Paul Krogstad, Deisy Contreras, Hwee Ng, Nicole Tobin, Christina D Chambers, Kerri Bertrand, Lars Bode, Grace M AldrovandiPediatric Research2022-01-19
From structure to sequence: Antibody discovery using cryoEM.Aleksandar Antanasijevic, Charles A Bowman, Robert N Kirchdoerfer, Christopher A Cottrell, Gabriel Ozorowski, Amit A Upadhyay, Kimberly M Cirelli, Diane G Carnathan, Chiamaka A Enemuo, Leigh M Sewall, Bartek Nogal, Fangzhu Zhao, Bettina Groschel, William R Schief, Devin Sok, Guido Silvestri, Shane Crotty, Steven E Bosinger, Andrew B WardScience Advances2022-01-19
Why sequence all eukaryotes?Mark Blaxter, John M Archibald, Anna K Childers, Jonathan A Coddington, Keith A Crandall, Federica Di Palma, Richard Durbin, Scott V Edwards, Jennifer A M Graves, Kevin J Hackett, Neil Hall, Erich D Jarvis, Rebecca N Johnson, Elinor K Karlsson, W John Kress, Shigehiro Kuraku, Mara K N Lawniczak, Kerstin Lindblad-Toh, Jose V Lopez, Nancy A Moran, Gene E Robinson, Oliver A Ryder, Beth Shapiro, Pamela S Soltis, Tandy Warnow, Guojie Zhang, Harris A LewinProceedings Of The National Academy Of Sciences Of The United States Of America2022-01-19
The Earth BioGenome Project 2020: Starting the clock.Harris A Lewin, Stephen Richards, Erez Lieberman Aiden, Miguel L Allende, John M Archibald, Miklós Bálint, Katharine B Barker, Bridget Baumgartner, Katherine Belov, Giorgio Bertorelle, Mark L Blaxter, Jing Cai, Nicolette D Caperello, Keith Carlson, Juan Carlos Castilla-Rubio, Shu-Miaw Chaw, Lei Chen, Anna K Childers, Jonathan A Coddington, Dalia A Conde, Montserrat Corominas, Keith A Crandall, Andrew J Crawford, Federica DiPalma, Richard Durbin, ThankGod E Ebenezer, Scott V Edwards, Olivier Fedrigo, Paul Flicek, Giulio Formenti, Richard A Gibbs, M Thomas P Gilbert, Melissa M Goldstein, Jennifer Marshall Graves, Henry T Greely, Igor V Grigoriev, Kevin J Hackett, Neil Hall, David Haussler, Kristofer M Helgen, Carolyn J Hogg, Sachiko Isobe, Kjetill Sigurd Jakobsen, Axel Janke, Erich D Jarvis, Warren E Johnson, Steven J M Jones, Elinor K Karlsson, Paul J Kersey, Jin-Hyoung Kim, W John Kress, Shigehiro Kuraku, Mara K N Lawniczak, James H Leebens-Mack, Xueyan Li, Kerstin Lindblad-Toh, Xin Liu, Jose V Lopez, Tomas Marques-Bonet, Sophie Mazard, Jonna A K Mazet, Camila J Mazzoni, Eugene W Myers, Rachel J O'Neill, Sadye Paez, Hyun Park, Gene E Robinson, Cristina Roquet, Oliver A Ryder, Jamal S M Sabir, H Bradley Shaffer, Timothy M Shank, Jacob S Sherkow, Pamela S Soltis, Boping Tang, Leho Tedersoo, Marcela Uliano-Silva, Kun Wang, Xiaofeng Wei, Regina Wetzer, Julia L Wilson, Xun Xu, Huanming Yang, Anne D Yoder, Guojie ZhangProceedings Of The National Academy Of Sciences Of The United States Of America2022-01-19
Correction to: Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers.Qiyun Zhu, Qiangchuan Hou, Shi Huang, Qianying Ou, Dongxue Huo, Yoshiki Vázquez-Baeza, Chaoping Cen, Victor Cantu, Mehrbod Estaki, Haibo Chang, Pedro Belda-Ferre, Ho-Cheol Kim, Kaining Chen, Rob Knight, Jiachao ZhangThe ISME Journal2022-01-18
Considerations for the Use of Phage Therapy in Clinical Practice.Gina A Suh, Thomas P Lodise, Pranita D Tamma, Jane M Knisely, Jose Alexander, Saima Aslam, Karen D Barton, Erica Bizzell, Katherine M C Totten, Joseph Campbell, Benjamin K Chan, Scott A Cunningham, Katherine E Goodman, Kerryl Greenwood-Quaintance, Anthony D Harris, Shayla Hesse, Anthony Maresso, Veronique Nussenblatt, David Pride, Michael Rybak, Zoe Sund, David Van Duin, Daria Van Tyne, Robin Patel, Antimicrobial Agents And Chemotherapy2022-01-18
Liver specific, systemic and genetic contributors to alcohol-related liver disease progression.Bernd Schnabl, Gavin E Arteel, Felix Stickel, Jan Hengstler, Nachiket Vartak, Ahmed Ghallab, Steven Dooley, Yujia Li, Robert F SchwabeZeitschrift Fur Gastroenterologie2022-01-18
Neuronally-enriched exosomal microRNA-27b mediates acute effects of ibuprofen on reward-related brain activity in healthy adults: a randomized, placebo-controlled, double-blind trial.Kaiping Burrows, Leandra K Figueroa-Hall, Rayus Kuplicki, Jennifer L Stewart, Ahlam M Alarbi, Rajagopal Ramesh, Jonathan B Savitz, T Kent Teague, Victoria B Risbrough, Martin P PaulusScientific Reports2022-01-17
Conceptual strategies for characterizing interactions in microbial communities.Sho M Kodera, Promi Das, Jack A Gilbert, Holly L LutzIScience2022-01-15
A Charge-Switchable Zwitterionic Peptide for Rapid Detection of SARS-CoV-2 Main Protease.Zhicheng Jin, Yash Mantri, Maurice Retout, Yong Cheng, Jiajing Zhou, Alec Jorns, Pavla Fajtova, Wonjun Yim, Colman Moore, Ming Xu, Matthew N Creyer, Raina M Borum, Jingcheng Zhou, Zhuohong Wu, Tengyu He, William F Penny, Anthony J O'Donoghue, Jesse V JokerstAngewandte Chemie (International Ed. In English)2022-01-14
A Dual-Color Fluorescent Probe Allows Simultaneous Imaging of Main and Papain-like Proteases of SARS-CoV-2-Infected Cells for Accurate Detection and Rapid Inhibitor Screening.Yong Cheng, Raina M Borum, Alex E Clark, Zhicheng Jin, Colman Moore, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Jesse V JokerstAngewandte Chemie (International Ed. In English)2022-01-14
Gestational insulin resistance is mediated by the gut microbiome-indoleamine 2,3-dioxygenase axis.Medha Priyadarshini, Guadalupe Navarro, Derek J Reiman, Anukriti Sharma, Kai Xu, Kristen Lednovich, Christopher R Manzella, Md Wasim Khan, Mariana Salas Garcia, Sarah Allard, Barton Wicksteed, George E Chlipala, Barbara Szynal, Beatriz Penalver Bernabe, Pauline M Maki, Ravinder K Gill, Gary H Perdew, Jack Gilbert, Yang Dai, Brian T LaydenGastroenterology2022-01-12
Structure and dynamics of SARS-CoV-2 proofreading exoribonuclease ExoN.Nicholas H Moeller, Ke Shi, Özlem Demir, Christopher Belica, Surajit Banerjee, Lulu Yin, Cameron Durfee, Rommie E Amaro, Hideki AiharaProceedings Of The National Academy Of Sciences Of The United States Of America2022-01-11
Comparison of the First and Second Waves of the Coronavirus Disease 2019 Pandemic in Children and Adolescents in a Middle-Income Country: Clinical Impact Associated with Severe Acute Respiratory Syndrome Coronavirus 2 Gamma Lineage.Eduardo A Oliveira, Ana Cristina Simões E Silva, Maria Christina L Oliveira, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Debora M Miranda, Daniella B Martelli, Ludmila R Silva, Clara C Pinhati, Hercílio Martelli-JúniorThe Journal Of Pediatrics2022-01-11
Optical genome mapping identifies rare structural variations as predisposition factors associated with severe COVID-19.Nikhil Shri Sahajpal, Chi-Yu Jill Lai, Alex Hastie, Ashis K Mondal, Siavash Raeisi Dehkordi, Caspar I van der Made, Olivier Fedrigo, Farooq Al-Ajli, Sawan Jalnapurkar, Marta Byrska-Bishop, Rashmi Kanagal-Shamanna, Brynn Levy, Maximilian Schieck, Thomas Illig, Silviu-Alin Bacanu, Janet S Chou, Adrienne G Randolph, Amyn M Rojiani, Michael C Zody, Catherine A Brownstein, Alan H Beggs, Vineet Bafna, Erich D Jarvis, Alexander Hoischen, Alka Chaubey, Ravindra Kolhe, IScience2022-01-10
The transcription factor ZIP-1 promotes resistance to intracellular infection in Caenorhabditis elegans.Vladimir Lažetić, Fengting Wu, Lianne B Cohen, Kirthi C Reddy, Ya-Ting Chang, Spencer S Gang, Gira Bhabha, Emily R TroemelNature Communications2022-01-10
Inhibition of histamine accumulation by novel histamine-degrading species of sp. isolated from goats and sheep milk.Safoora Pashangeh, Seyed Shahram Shekarforoush, Mahmoud Aminlari, Saeid Hosseinzadeh, Victor Nizet, Samira Dahesh, Samane RahmdelFood Science & Nutrition2022-01-09
Comparative Analysis of T Cell Spatial Proteomics and the Influence of HIV Expression.Aaron L Oom, Charlotte A Stoneham, Mary K Lewinski, Alicia Richards, Jacob M Wozniak, Km Shams-Ud-Doha, David J Gonzalez, Nevan J Krogan, John GuatelliMolecular & Cellular Proteomics : MCP2022-01-08
Roles for the Mycobiome in Liver Disease.Suling Zeng, Bernd SchnablLiver International : Official Journal Of The International Association For The Study Of The Liver2022-01-07
An intestinally secreted host factor promotes microsporidia invasion of .Hala Tamim El Jarkass, Calvin Mok, Michael R Schertzberg, Andrew G Fraser, Emily R Troemel, Aaron W ReinkeELife2022-01-07
A machine-learning algorithm for diagnosis of multisystem inflammatory syndrome in children and Kawasaki disease in the USA: a retrospective model development and validation study.Jonathan Y Lam, Chisato Shimizu, Adriana H Tremoulet, Emelia Bainto, Samantha C Roberts, Nipha Sivilay, Michael A Gardiner, John T Kanegaye, Alexander H Hogan, Juan C Salazar, Sindhu Mohandas, Jacqueline R Szmuszkovicz, Simran Mahanta, Audrey Dionne, Jane W Newburger, Emily Ansusinha, Roberta L DeBiasi, Shiying Hao, Xuefeng B Ling, Harvey J Cohen, Shamim Nemati, Jane C Burns, , The Lancet. Digital Health2022-01-06
Disparities in telemedicine during COVID-19.Alexander S Qian, Melody K Schiaffino, Vinit Nalawade, Lara Aziz, Fernanda V Pacheco, Bao Nguyen, Peter Vu, Sandip P Patel, Maria Elena Martinez, James D MurphyCancer Medicine2022-01-05
Human Milk Oligosaccharides Reduce Murine Group B Vaginal Colonization with Minimal Impact on the Vaginal Microbiota.Marlyd E Mejia, Samantha Ottinger, Alison Vrbanac, Priyanka Babu, Jacob J Zulk, David Moorshead, Lars Bode, Victor Nizet, Kathryn A PatrasMSphere2022-01-05
Machine Learning Applied to Omics Datasets Predicts Mortality in Patients with Alcoholic Hepatitis.Bei Gao, Tsung-Chin Wu, Sonja Lang, Lu Jiang, Yi Duan, Derrick E Fouts, Xinlian Zhang, Xin-Ming Tu, Bernd SchnablMetabolites2022-01-05
Gut Microbiome and Alcohol-associated Liver Disease.Cyriac A Philips, Bernd Schnabl, Jasmohan S BajajJournal Of Clinical And Experimental Hepatology2022-01-04
Pediatric Osteoarticular Infections Caused by Mycobacteria Tuberculosis Complex: A 26-Year Review of Cases in San Diego, CA.Ian Drobish, Nanda Ramchandar, Vanessa Raabe, Alice Pong, John Bradley, Christopher CannavinoThe Pediatric Infectious Disease Journal2022-01-03
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities.Derek M Bickhart, Mikhail Kolmogorov, Elizabeth Tseng, Daniel M Portik, Anton Korobeynikov, Ivan Tolstoganov, Gherman Uritskiy, Ivan Liachko, Shawn T Sullivan, Sung Bong Shin, Alvah Zorea, Victòria Pascal Andreu, Kevin Panke-Buisse, Marnix H Medema, Itzhak Mizrahi, Pavel A Pevzner, Timothy P L SmithNature Biotechnology2022-01-03
Preface.Benjamin Bonavida, Vipin KumarCritical Reviews In Immunology2022-01-01
Contribution of Concurrent Comorbidities to Sepsis-Related Mortality in Preterm Infants ≤32 Weeks of Gestation at an Academic Neonatal Intensive Care Network.Brian W Barnette, Benjamin T Schumacher, Richard F Armenta, James L Wynn, Andrew Richardson, John S Bradley, Sarah Lazar, Shelley M LawrenceAmerican Journal Of Perinatology2021-12-31
Chlororesistoflavins A and B, Chlorinated Benzopyrene Antibiotics Produced by the Marine-Derived Actinomycete sp. Strain EG32.Min Cheol Kim, Zhifei Li, Reiko Cullum, Tadeusz F Molinski, Mennat Allah G Eid, Ali M S Hebishy, Ahmed H I Faraag, Ahmed E Abdel Moneim, Mohamed S Abdelfattah, William FenicalJournal Of Natural Products2021-12-30
Possibilities and limits for using the gut microbiome to improve captive animal health.Jessica Diaz, Aspen T ReeseAnimal Microbiome2021-12-29
Saccharobisindole, Neoasterric Methyl Ester, and 7-Chloro-4(1H)-quinolone: Three New Compounds Isolated from the Marine Bacterium sp.Sohee Kim, Tu Cam Le, Sang-Ah Han, Prima F Hillman, Ahreum Hong, Sunghoon Hwang, Young Eun Du, Hiyoung Kim, Dong-Chan Oh, Sun-Shin Cha, Jihye Lee, Sang-Jip Nam, William FenicalMarine Drugs2021-12-29
Genome-Scale Metabolic Modeling Enables In-Depth Understanding of Big Data.Anurag Passi, Juan D Tibocha-Bonilla, Manish Kumar, Diego Tec-Campos, Karsten Zengler, Cristal ZunigaMetabolites2021-12-24
Extremophile enzyme optimization for low temperature and high salinity are fundamentally incompatible.Luke Piszkin, Jeff BowmanExtremophiles : Life Under Extreme Conditions2021-12-23
Linking anaerobic gut bacteria and cardiovascular disease.Joanna Coker, Livia S Zaramela, Karsten ZenglerNature Microbiology2021-12-23
Class Ib MHC-Mediated Immune Interactions Play a Critical Role in Maintaining Mucosal Homeostasis in the Mammalian Large Intestine.Suryasarathi Dasgupta, Igor Maricic, Jay Tang, Stephen Wandro, Kelly Weldon, Carolina S Carpenter, Lars Eckmann, Jesus Rivera-Nieves, William Sandborn, Rob Knight, Peter Dorrestein, Austin D Swafford, Vipin KumarImmunoHorizons2021-12-15
Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions.Lian Narunsky-Haziza, Gregory D Sepich-Poore, Ilana Livyatan, Omer Asraf, Cameron Martino, Deborah Nejman, Nancy Gavert, Jason E Stajich, Guy Amit, Antonio González, Stephen Wandro, Gili Perry, Ruthie Ariel, Arnon Meltser, Justin P Shaffer, Qiyun Zhu, Nora Balint-Lahat, Iris Barshack, Maya Dadiani, Einav N Gal-Yam, Sandip Pravin Patel, Amir Bashan, Austin D Swafford, Yitzhak Pilpel, Rob Knight, Ravid StraussmanCell2021-12-13
Mammalian gut metabolomes mirror microbiome composition and host phylogeny.Rachel Gregor, Maraike Probst, Stav Eyal, Alexander Aksenov, Goor Sasson, Igal Horovitz, Pieter C Dorrestein, Michael M Meijler, Itzhak MizrahiThe ISME Journal2021-12-13
Brilliantia kiribatiensis, a new genus and species of Cladophorales (Chlorophyta) from the remote coral reefs of the Southern Line Islands, Pacific Ocean.Frederik Leliaert, Emily L A Kelly, Jan Janouškovec, Michael D Fox, Maggie D Johnson, Farran M Redfern, Taati Eria, Andreas F Haas, Enric Sala, Stuart A Sandin, Jennifer E SmithJournal Of Phycology2021-12-12
From microbial community structure to metabolic inference using paprica.Natalia G Erazo, Avishek Dutta, Jeff S BowmanSTAR Protocols2021-12-11
Microbial co-occurrence complicates associations of gut microbiome with US immigration, dietary intake and obesity.Zheng Wang, Mykhaylo Usyk, Yoshiki Vázquez-Baeza, Guo-Chong Chen, Carmen R Isasi, Jessica S Williams-Nguyen, Simin Hua, Daniel McDonald, Bharat Thyagarajan, Martha L Daviglus, Jianwen Cai, Kari E North, Tao Wang, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin QiGenome Biology2021-12-10
Bicarbonate modulates delafloxacin activity against MDR Staphylococcus aureus and Pseudomonas aeruginosa.Mische Holland, Elisabet Bjanes, Victor Nizet, Nicholas DillonThe Journal Of Antimicrobial Chemotherapy2021-12-10
Prior Methamphetamine Use Disorder History Does Not Impair Interoceptive Processing of Soft Touch in HIV Infection.Amanda Bischoff-Grethe, Ronald J Ellis, Susan F Tapert, Martin P Paulus, Igor Grant, Translational Methamphetamine Aids Research Center TmarcViruses2021-12-10
The population genetics of collateral resistance and sensitivity.Sarah M Ardell, Sergey KryazhimskiyELife2021-12-10
CRIg on liver macrophages clears pathobionts and protects against alcoholic liver disease.Yi Duan, Huikuan Chu, Katharina Brandl, Lu Jiang, Suling Zeng, Nairika Meshgin, Eleni Papachristoforou, Josepmaria Argemi, Beatriz G Mendes, Yanhan Wang, Hua Su, Weizhong Sun, Cristina Llorente, Tim Hendrikx, Xiao Liu, Mojgan Hosseini, Tatiana Kisseleva, David A Brenner, Ramon Bataller, Prakash Ramachandran, Michael Karin, Wenxian Fu, Bernd SchnablNature Communications2021-12-09
The fecal mycobiome in non-alcoholic fatty liver disease.Münevver Demir, Sonja Lang, Phillipp Hartmann, Yi Duan, Anna Martin, Yukiko Miyamoto, Marina Bondareva, Xinlian Zhang, Yanhan Wang, Philipp Kasper, Corinna Bang, Christoph Roderburg, Frank Tacke, Hans-Michael Steffen, Tobias Goeser, Andrey Kruglov, Lars Eckmann, Peter Stärkel, Derrick E Fouts, Bernd SchnablJournal Of Hepatology2021-12-09
Defining and quantifying the core microbiome: Challenges and prospects.Alexander T Neu, Eric E Allen, Kaustuv RoyProceedings Of The National Academy Of Sciences Of The United States Of America2021-12-04
Clean room microbiome complexity impacts planetary protection bioburden.Ryan Hendrickson, Camilla Urbaniak, Jeremiah J Minich, Heidi S Aronson, Cameron Martino, Ramunas Stepanauskas, Rob Knight, Kasthuri VenkateswaranMicrobiome2021-12-04
Seriniquinones as Therapeutic Leads for Treatment of BRAF and NRAS Mutant Melanomas.Amanda S Hirata, Paula Rezende-Teixeira, João Agostinho Machado-Neto, Paula C Jimenez, James J La Clair, William Fenical, Leticia V Costa-LotufoMolecules (Basel, Switzerland)2021-12-04
GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser.Daniel Petras, Vanessa V Phelan, Deepa Acharya, Andrew E Allen, Allegra T Aron, Nuno Bandeira, Benjamin P Bowen, Deirdre Belle-Oudry, Simon Boecker, Dale A Cummings, Jessica M Deutsch, Eoin Fahy, Neha Garg, Rachel Gregor, Jo Handelsman, Mirtha Navarro-Hoyos, Alan K Jarmusch, Scott A Jarmusch, Katherine Louie, Katherine N Maloney, Michael T Marty, Michael M Meijler, Itzhak Mizrahi, Rachel L Neve, Trent R Northen, Carlos Molina-Santiago, Morgan Panitchpakdi, Benjamin Pullman, Aaron W Puri, Robin Schmid, Shankar Subramaniam, Monica Thukral, Felipe Vasquez-Castro, Pieter C Dorrestein, Mingxun WangNature Methods2021-12-03
A particulate saponin/TLR agonist vaccine adjuvant alters lymph flow and modulates adaptive immunity.Murillo Silva, Yu Kato, Mariane B Melo, Ivy Phung, Brian L Freeman, Zhongming Li, Kangsan Roh, Jan W Van Wijnbergen, Hannah Watkins, Chiamaka A Enemuo, Brittany L Hartwell, Jason Y H Chang, Shuhao Xiao, Kristen A Rodrigues, Kimberly M Cirelli, Na Li, Sonya Haupt, Aereas Aung, Benjamin Cossette, Wuhbet Abraham, Swati Kataria, Raiza Bastidas, Jinal Bhiman, Caitlyn Linde, Nathaniel I Bloom, Bettina Groschel, Erik Georgeson, Nicole Phelps, Ayush Thomas, Julia Bals, Diane G Carnathan, Daniel Lingwood, Dennis R Burton, Galit Alter, Timothy P Padera, Angela M Belcher, William R Schief, Guido Silvestri, Ruth M Ruprecht, Shane Crotty, Darrell J IrvineScience Immunology2021-12-03
Gut microbiota-driven brain Aβ amyloidosis in mice requires microglia.Hemraj B Dodiya, Holly L Lutz, Ian Q Weigle, Priyam Patel, Julia Michalkiewicz, Carlos J Roman-Santiago, Can Martin Zhang, Yingxia Liang, Abhinav Srinath, Xulun Zhang, Jessica Xia, Monica Olszewski, Xiaoqiong Zhang, Matthew John Schipma, Eugene B Chang, Rudolph E Tanzi, Jack A Gilbert, Sangram S SisodiaThe Journal Of Experimental Medicine2021-12-02
Intestinal commensal microbiota and cytokines regulate Fut2 Paneth cells for gut defense.Mariko Kamioka, Yoshiyuki Goto, Kiminori Nakamura, Yuki Yokoi, Rina Sugimoto, Shuya Ohira, Yosuke Kurashima, Shingo Umemoto, Shintaro Sato, Jun Kunisawa, Yu Takahashi, Steven E Domino, Jean-Christophe Renauld, Susumu Nakae, Yoichiro Iwakura, Peter B Ernst, Tokiyoshi Ayabe, Hiroshi KiyonoProceedings Of The National Academy Of Sciences Of The United States Of America2021-12-02
Siderophore-mediated zinc acquisition enhances enterobacterial colonization of the inflamed gut.Judith Behnsen, Hui Zhi, Allegra T Aron, Vivekanandan Subramanian, William Santus, Michael H Lee, Romana R Gerner, Daniel Petras, Janet Z Liu, Keith D Green, Sarah L Price, Jose Camacho, Hannah Hillman, Joshua Tjokrosurjo, Nicola P Montaldo, Evelyn M Hoover, Sean Treacy-Abarca, Benjamin A Gilston, Eric P Skaar, Walter J Chazin, Sylvie Garneau-Tsodikova, Matthew B Lawrenz, Robert D Perry, Sean-Paul Nuccio, Pieter C Dorrestein, Manuela RaffatelluNature Communications2021-12-01
The Fecal Microbiome and Metabolome of Pitt Hopkins Syndrome, a Severe Autism Spectrum Disorder.Amanda H Dilmore, Daniel McDonald, Tanya T Nguyen, James B Adams, Rosa Krajmalnik-Brown, Emmanuel Elijah, Pieter C Dorrestein, Rob KnightMSystems2021-11-30
A combined EM and proteomic analysis places HIV-1 Vpu at the crossroads of retromer and ESCRT complexes: PTPN23 is a Vpu-cofactor.Charlotte A Stoneham, Simon Langer, Paul D De Jesus, Jacob M Wozniak, John Lapek, Thomas Deerinck, Andrea Thor, Lars Pache, Sumit K Chanda, David J Gonzalez, Mark Ellisman, John GuatelliPLoS Pathogens2021-11-29
Physicochemical properties determining drug detection in skin.Wout Bittremieux, Rohit S Advani, Alan K Jarmusch, Shaden Aguirre, Aileen Lu, Pieter C Dorrestein, Shirley M TsunodaClinical And Translational Science2021-11-28
Differential Fecal Microbiome Dysbiosis after Equivalent Traumatic Brain Injury in Aged Versus Young Adult Mice.Booker T Davis, Mecca B A R Islam, Promi Das, Jack A Gilbert, Karen J Ho, Steven J SchwulstJournal Of Experimental Neurology2021-11-26
Redrawing therapeutic boundaries: microbiota and cancer.Jonathan Sholl, Gregory D Sepich-Poore, Rob Knight, Thomas PradeuTrends In Cancer2021-11-26
Host Factors in Dysregulation of the Gut Barrier Function during Alcohol-Associated Liver Disease.Luca Maccioni, Isabelle A Leclercq, Bernd Schnabl, Peter StärkelInternational Journal Of Molecular Sciences2021-11-24
Vertical Inheritance Facilitates Interspecies Diversification in Biosynthetic Gene Clusters and Specialized Metabolites.Alexander B Chase, Douglas Sweeney, Mitchell N Muskat, Dulce G Guillén-Matus, Paul R JensenMBio2021-11-23
Comparison of fecal and oral collection methods for studies of the human microbiota in two Iranian cohorts.Zeni Wu, Autumn G Hullings, Reza Ghanbari, Arash Etemadi, Yunhu Wan, Bin Zhu, Hossein Poustchi, Behnam Bagheri Fahraji, Mohammad Javad Zare Sakhvidi, Jianxin Shi, Rob Knight, Reza Malekzadeh, Rashmi Sinha, Emily VogtmannBMC Microbiology2021-11-22
Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals.Linda Wegley Kelly, Craig E Nelson, Daniel Petras, Irina Koester, Zachary A Quinlan, Milou G I Arts, Louis-Felix Nothias, Jacqueline Comstock, Brandie M White, Ellen C Hopmans, Fleur C van Duyl, Craig A Carlson, Lihini I Aluwihare, Pieter C Dorrestein, Andreas F HaasProceedings Of The National Academy Of Sciences Of The United States Of America2021-11-22
Native mass spectrometry-based metabolomics identifies metal-binding compounds.Allegra T Aron, Daniel Petras, Robin Schmid, Julia M Gauglitz, Isabell Büttel, Luis Antelo, Hui Zhi, Sean-Paul Nuccio, Christina C Saak, Kien P Malarney, Eckhard Thines, Rachel J Dutton, Lihini I Aluwihare, Manuela Raffatellu, Pieter C DorresteinNature Chemistry2021-11-18
Severe delayed hypersensitivity reactions to IL-1 and IL-6 inhibitors link to common HLA-DRB1*15 alleles.Vivian E Saper, Michael J Ombrello, Adriana H Tremoulet, Gonzalo Montero-Martin, Sampath Prahalad, Scott Canna, Chisato Shimizu, Gail Deutsch, Serena Y Tan, Elaine F Remmers, Dimitri Monos, Timothy Hahn, Omkar K Phadke, Elaine Cassidy, Ian Ferguson, Vamsee Mallajosyula, Jianpeng Xu, Jaime S Rosa Duque, Gilbert T Chua, Debopam Ghosh, Ann Marie Szymanski, Danielle Rubin, Jane C Burns, Lu Tian, Marcelo A Fernandez-Vina, Elizabeth D Mellins, Jill A Hollenbach, , Annals Of The Rheumatic Diseases2021-11-17
Reporting guidelines for human microbiome research: the STORMS checklist.Chloe Mirzayi, Audrey Renson, , , Fatima Zohra, Shaimaa Elsafoury, Ludwig Geistlinger, Lora J Kasselman, Kelly Eckenrode, Janneke van de Wijgert, Amy Loughman, Francine Z Marques, David A MacIntyre, Manimozhiyan Arumugam, Rimsha Azhar, Francesco Beghini, Kirk Bergstrom, Ami Bhatt, Jordan E Bisanz, Jonathan Braun, Hector Corrada Bravo, Gregory A Buck, Frederic Bushman, David Casero, Gerard Clarke, Maria Carmen Collado, Paul D Cotter, John F Cryan, Ryan T Demmer, Suzanne Devkota, Eran Elinav, Juan S Escobar, Jennifer Fettweis, Robert D Finn, Anthony A Fodor, Sofia Forslund, Andre Franke, Cesare Furlanello, Jack Gilbert, Elizabeth Grice, Benjamin Haibe-Kains, Scott Handley, Pamela Herd, Susan Holmes, Jonathan P Jacobs, Lisa Karstens, Rob Knight, Dan Knights, Omry Koren, Douglas S Kwon, Morgan Langille, Brianna Lindsay, Dermot McGovern, Alice C McHardy, Shannon McWeeney, Noel T Mueller, Luigi Nezi, Matthew Olm, Noah Palm, Edoardo Pasolli, Jeroen Raes, Matthew R Redinbo, Malte Rühlemann, R Balfour Sartor, Patrick D Schloss, Lynn Schriml, Eran Segal, Michelle Shardell, Thomas Sharpton, Ekaterina Smirnova, Harry Sokol, Justin L Sonnenburg, Sujatha Srinivasan, Louise B Thingholm, Peter J Turnbaugh, Vaibhav Upadhyay, Ramona L Walls, Paul Wilmes, Takuji Yamada, Georg Zeller, Mingyu Zhang, Ni Zhao, Liping Zhao, Wenjun Bao, Aedin Culhane, Viswanath Devanarayan, Joaquin Dopazo, Xiaohui Fan, Matthias Fischer, Wendell Jones, Rebecca Kusko, Christopher E Mason, Tim R Mercer, Susanna-Assunta Sansone, Andreas Scherer, Leming Shi, Shraddha Thakkar, Weida Tong, Russ Wolfinger, Christopher Hunter, Nicola Segata, Curtis Huttenhower, Jennifer B Dowd, Heidi E Jones, Levi WaldronNature Medicine2021-11-17
Gut microbiome in Parkinson's disease: New insights from meta-analysis.Tzi Shin Toh, Chun Wie Chong, Shen-Yang Lim, Jeff Bowman, Mihai Cirstea, Chin-Hsien Lin, Chieh-Chang Chen, Silke Appel-Cresswell, B Brett Finlay, Ai Huey TanParkinsonism & Related Disorders2021-11-17
Bacteriophages and their potential for treatment of gastrointestinal diseases.Yi Duan, Ry Young, Bernd SchnablNature Reviews. Gastroenterology & Hepatology2021-11-15
High-resolution in situ analysis of Cas9 germline transcript distributions in gene-drive Anopheles mosquitoes.Gerard Terradas, Anita Hermann, Anthony A James, William McGinnis, Ethan BierG3 (Bethesda, Md.)2021-11-15
The Human-Milk Oligosaccharide Profile of Lactating Women in Dhaka, Bangladesh.Lisa G Pell, Eric O Ohuma, Chloe Yonemitsu, Miranda G Loutet, Tahmeed Ahmed, Abdullah Al Mahmud, Meghan B Azad, Lars Bode, Daniel E RothCurrent Developments In Nutrition2021-11-13
Microbial-Driven Immunological Memory and Its Potential Role in Microbiome Editing for the Prevention of Colorectal Cancer.Laure Campillo-Gimenez, David Rios-Covian, Jesus Rivera-Nieves, Hiroshi Kiyono, Hiutung Chu, Peter B ErnstFrontiers In Cellular And Infection Microbiology2021-11-12
Escherichia coli Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational DataPatrick V Phaneuf, Daniel C Zielinski, James T Yurkovich, Josefin Johnsen, Richard Szubin, Lei Yang, Se Hyeuk Kim, Sebastian Schulz, Muyao Wu, Christopher Dalldorf, Emre Ozdemir, Rebecca M Lennen, Bernhard O Palsson, Adam M FeistACS Synthetic Biology2021-11-11
Spectrum of Viral Pathogens Identified in Children with Clinical Myocarditis (Pre-COVID, 2000-2018): Etiologic Agent vs Innocent Bystander.Othman A Aljohani, Duncan Mackie, Andras Bratincsak, John Bradley, James C PerryThe Journal Of Pediatrics2021-11-10
Integrative Analysis of Metabolome and Microbiome in Patients with Progressive Alcohol-Associated Liver Disease.Bei Gao, Yixin Zhu, Nan Gao, Weishou Shen, Peter Stärkel, Bernd SchnablMetabolites2021-11-10
Identification of a therapeutic interfering particle-A single-dose SARS-CoV-2 antiviral intervention with a high barrier to resistance.Sonali Chaturvedi, Gustavo Vasen, Michael Pablo, Xinyue Chen, Nathan Beutler, Arjun Kumar, Elizabeth Tanner, Sylvia Illouz, Donna Rahgoshay, John Burnett, Leo Holguin, Pei-Yi Chen, Blaise Ndjamen, Melanie Ott, Robert Rodick, Thomas Rogers, Davey M Smith, Leor S WeinbergerCell2021-11-10
Re-classification of strains and mining secondary metabolite biosynthetic gene clusters.Namil Lee, Mira Choi, Woori Kim, Soonkyu Hwang, Yongjae Lee, Ji Hun Kim, Gahyeon Kim, Hyeseong Kim, Suhyung Cho, Sun Chang Kim, Bernhard Palsson, Kyoung-Soon Jang, Byung-Kwan ChoIScience2021-11-09
The Gut Microbiome Modifies the Association between a Mediterranean Diet and Diabetes in US Hispanic / Latino Population.Dong D Wang, Qibin Qi, Zheng Wang, Mykhaylo Usyk, Daniela Sotres-Alvarez, Josiemer Mattei, Martha Tamez, Marc D Gellman, Martha Daviglus, Frank B Hu, Meir J Stampfer, Curtis Huttenhower, Rob Knight, Robert D Burk, Robert C KaplanThe Journal Of Clinical Endocrinology And Metabolism2021-11-08
Multi-Omics Study of Keystone Species in a Cystic Fibrosis Microbiome.Cynthia B Silveira, Ana G Cobián-Güemes, Carla Uranga, Jonathon L Baker, Anna Edlund, Forest Rohwer, Douglas ConradInternational Journal Of Molecular Sciences2021-11-07
Genome mining methods to discover bioactive natural products.Katherine D Bauman, Keelie S Butler, Bradley S Moore, Jonathan R ChekanNatural Product Reports2021-11-04
Potent Anti-SARS-CoV-2 Activity by the Natural Product Gallinamide A and Analogues via Inhibition of Cathepsin L.Anneliese S Ashhurst, Arthur H Tang, Pavla Fajtová, Michael C Yoon, Anupriya Aggarwal, Max J Bedding, Alexander Stoye, Laura Beretta, Dustin Pwee, Aleksandra Drelich, Danielle Skinner, Linfeng Li, Thomas D Meek, James H McKerrow, Vivian Hook, Chien-Te Tseng, Mark Larance, Stuart Turville, William H Gerwick, Anthony J O'Donoghue, Richard J PayneJournal Of Medicinal Chemistry2021-11-03
Role of the Gut Microbiota in Parenteral Nutrition-associated Liver Disease: From Current Knowledge to Future Opportunities.Lu Jiang, Ying Wang, Yongtao Xiao, Yong Wang, Junkai Yan, Bernd Schnabl, Wei CaiThe Journal Of Nutrition2021-11-03
Analysis of SARS-CoV-2 RNA Persistence across Indoor Surface Materials Reveals Best Practices for Environmental Monitoring Programs.Rodolfo A Salido, Victor J Cantú, Alex E Clark, Sandra L Leibel, Anahid Foroughishafiei, Anushka Saha, Abbas Hakim, Alhakam Nouri, Alma L Lastrella, Anelizze Castro-Martínez, Ashley Plascencia, Bhavika K Kapadia, Bing Xia, Christopher A Ruiz, Clarisse A Marotz, Daniel Maunder, Elijah S Lawrence, Elizabeth W Smoot, Emily Eisner, Evelyn S Crescini, Laura Kohn, Lizbeth Franco Vargas, Marisol Chacón, Maryann Betty, Michal Machnicki, Min Yi Wu, Nathan A Baer, Pedro Belda-Ferre, Peter De Hoff, Phoebe Seaver, R Tyler Ostrander, Rebecca Tsai, Shashank Sathe, Stefan Aigner, Sydney C Morgan, Toan T Ngo, Tom Barber, Willi Cheung, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Rebecca Fielding-Miller, Rob KnightMSystems2021-11-02
Putting microbial interactions back into community contexts.Emily C Pierce, Rachel J DuttonCurrent Opinion In Microbiology2021-11-02
Uremic serum damages endothelium by provoking excessive neutrophil extracellular trap formation.Hoi Woul Lee, Victor Nizet, Jung Nam An, Hyung Seok Lee, Young Rim Song, Sung Gyun Kim, Jwa-Kyung KimScientific Reports2021-11-02
The interaction of enteric bacterial effectors with the host engulfment pathway control innate immune responses.Ibrahim M Sayed, Stella-Rita Ibeawuchi, Dominique Lie, Mahitha Shree Anandachar, Rama Pranadinata, Manuela Raffatellu, Soumita DasGut Microbes2021-11-01
Antibacterial Meroterpenoids, Merochlorins G-J from the Marine Bacterium sp.Min-Ji Ryu, Prima F Hillman, Jihye Lee, Sunghoon Hwang, Eun-Young Lee, Sun-Shin Cha, Inho Yang, Dong-Chan Oh, Sang-Jip Nam, William FenicalMarine Drugs2021-10-30
Development of a Rapid and Sensitive CasRx-Based Diagnostic Assay for SARS-CoV-2.Daniel J Brogan, Duverney Chaverra-Rodriguez, Calvin P Lin, Andrea L Smidler, Ting Yang, Lenissa M Alcantara, Igor Antoshechkin, Junru Liu, Robyn R Raban, Pedro Belda-Ferre, Rob Knight, Elizabeth A Komives, Omar S AkbariACS Sensors2021-10-29
Fecal Microbiome Composition Does Not Predict Diet-Induced TMAO Production in Healthy Adults.Marc Ferrell, Peter Bazeley, Zeneng Wang, Bruce S Levison, Xinmin S Li, Xun Jia, Ronald M Krauss, Rob Knight, Aldons J Lusis, J C Garcia-Garcia, Stanley L Hazen, W H Wilson TangJournal Of The American Heart Association2021-10-29
Rapid, Affordable, and Uncomplicated Production of Bacterial Cell-free Lysate.Robert M Cooper, Taishi Tonooka, Andriy Didovyk, Jeff HastyJournal Of Visualized Experiments : JoVE2021-10-29
Facultative Parthenogenesis in California Condors.Oliver A Ryder, Steven Thomas, Jessica Martin Judson, Michael N Romanov, Sugandha Dandekar, Jeanette C Papp, Lindsay C Sidak-Loftis, Kelli Walker, Ilse H Stalis, Michael Mace, Cynthia C Steiner, Leona G ChemnickThe Journal Of Heredity2021-10-28
Asymptomatic detection of SARS-CoV-2 among cancer patients receiving infusional anti-cancer therapy.Justin Shaya, Angelo Cabal, Taylor Nonato, Francesca Torriani, Joseph Califano, Scott Lippman, Assuntina Sacco, Rana R McKayCancer Medicine2021-10-28
Biosynthesis and antifungal activity of fungus-induced O-methylated flavonoids in maize.Christiane Förster, Vinzenz Handrick, Yezhang Ding, Yoko Nakamura, Christian Paetz, Bernd Schneider, Gabriel Castro-Falcón, Chambers C Hughes, Katrin Luck, Sowmya Poosapati, Grit Kunert, Alisa Huffaker, Jonathan Gershenzon, Eric A Schmelz, Tobias G KöllnerPlant Physiology2021-10-27
Characterization of SARS-CoV-2 and common cold coronavirus-specific T-cell responses in MIS-C and Kawasaki disease children.Li-En Hsieh, Alba Grifoni, John Sidney, Chisato Shimizu, Hiroko Shike, Nanda Ramchandar, Elizabeth Moreno, Adriana H Tremoulet, Jane C Burns, Alessandra FrancoEuropean Journal Of Immunology2021-10-27
Drugs and Bugs: The Gut-Brain Axis and Substance Use Disorders.Sierra Simpson, Rio Mclellan, Emma Wellmeyer, Frederic Matalon, Olivier GeorgeJournal Of Neuroimmune Pharmacology : The Official Journal Of The Society On NeuroImmune Pharmacology2021-10-25
Editorial: Host-Pathogen Interactions During Pneumococcal Infection.Masaya Yamaguchi, Yuki Kinjo, Victor NizetFrontiers In Cellular And Infection Microbiology2021-10-25
Population Pharmacokinetic Modeling and Probability of Pharmacodynamic Target Attainment for Ceftazidime-Avibactam in Pediatric Patients Aged 3 Months and Older.Richard C Franzese, Lynn McFadyen, Kenny J Watson, Todd Riccobene, Timothy J Carrothers, Manoli Vourvahis, Phylinda L S Chan, Susan Raber, John S Bradley, Mark LovernClinical Pharmacology And Therapeutics2021-10-23
Hepatocellular Carcinoma Risk Assessment for Patients With Advanced Fibrosis After Eradication of Hepatitis C Virus.Nobuharu Tamaki, Masayuki Kurosaki, Yutaka Yasui, Nami Mori, Keiji Tsuji, Chitomi Hasebe, Kouji Joko, Takehiro Akahane, Koichiro Furuta, Haruhiko Kobashi, Hiroyuki Kimura, Hitoshi Yagisawa, Hiroyuki Marusawa, Masahiko Kondo, Yuji Kojima, Hideo Yoshida, Yasushi Uchida, Toshifumi Tada, Shinichiro Nakamura, Satoshi Yasuda, Hidenori Toyoda, Rohit Loomba, Namiki IzumiHepatology Communications2021-10-22
Mucin-mimetic glycan arrays integrating machine learning for analyzing receptor pattern recognition by influenza A viruses.Taryn M Lucas, Chitrak Gupta, Meghan O Altman, Emi Sanchez, Matthew R Naticchia, Pascal Gagneux, Abhishek Singharoy, Kamil GodulaChem2021-10-22
Specialized Metabolite Mediated Predation Defense in the Marine Actinobacterium SalinisporaRobert N Tuttle, Greg W Rouse, Gabriel Castro-Falcón, Chambers C Hughes, Paul R JensenApplied And Environmental Microbiology2021-10-20
Antimicrobials from a feline commensal bacterium inhibit skin infection by drug-resistant S. pseudintermediusAlan M O'Neill, Kate A Worthing, Nikhil Kulkarni, Fengwu Li, Teruaki Nakatsuji, Dominic McGrosso, Robert H Mills, Gayathri Kalla, Joyce Y Cheng, Jacqueline M Norris, Kit Pogliano, Joe Pogliano, David J Gonzalez, Richard L GalloELife2021-10-19
The S Protein of Group B Is a Critical Virulence Determinant That Impacts the Cell Surface Virulome.Anaamika Campeau, Satoshi Uchiyama, Concepcion Sanchez, Consuelo Sauceda, Victor Nizet, David J GonzalezFrontiers In Microbiology2021-10-14
Immune Response in Severe and Non-Severe Coronavirus Disease 2019 (COVID-19) Infection: A Mechanistic Landscape.Kavitha Mukund, Priya Nayak, Chethan Ashokkumar, Sohail Rao, Jose Almeda, Monica M Betancourt-Garcia, Rakesh Sindhi, Shankar SubramaniamFrontiers In Immunology2021-10-13
Microbial diversity in tropical marine sediments assessed using culture-dependent and culture-independent techniques.Alyssa M Demko, Nastassia V Patin, Paul R JensenEnvironmental Microbiology2021-10-11
Traditional Farming Lifestyle in Old Older Mennonites Modulates Human Milk Composition.Antti E Seppo, Rakin Choudhury, Catherine Pizzarello, Rohith Palli, Sade Fridy, Puja Sood Rajani, Jessica Stern, Camille Martina, Chloe Yonemitsu, Lars Bode, Kevin Bu, Sabrina Tamburini, Enrica Piras, David S Wallach, Maria Allen, R John Looney, Jose C Clemente, Juilee Thakar, Kirsi M JärvinenFrontiers In Immunology2021-10-11
Reconstitution of an intact clock reveals mechanisms of circadian timekeeping.Archana G Chavan, Jeffrey A Swan, Joel Heisler, Cigdem Sancar, Dustin C Ernst, Mingxu Fang, Joseph G Palacios, Rebecca K Spangler, Clive R Bagshaw, Sarvind Tripathi, Priya Crosby, Susan S Golden, Carrie L Partch, Andy LiWangScience (New York, N.Y.)2021-10-08
SARS-CoV-2 infection generates tissue-localized immunological memory in humans.Maya M L Poon, Ksenia Rybkina, Yu Kato, Masaru Kubota, Rei Matsumoto, Nathaniel I Bloom, Zeli Zhang, Kathryn M Hastie, Alba Grifoni, Daniela Weiskopf, Steven B Wells, Basak B Ural, Nora Lam, Peter A Szabo, Pranay Dogra, Yoon S Lee, Joshua I Gray, Marissa C Bradley, Maigan A Brusko, Todd M Brusko, Erica O Saphire, Thomas J Connors, Alessandro Sette, Shane Crotty, Donna L FarberScience Immunology2021-10-07
A posteriori dietary patterns better explain variations of the gut microbiome than individual markers in the American Gut Project.Aurélie Cotillard, Agnès Cartier-Meheust, Nicole S Litwin, Soline Chaumont, Mathilde Saccareau, Franck Lejzerowicz, Julien Tap, Hana Koutnikova, Diana Gutierrez Lopez, Daniel McDonald, Se Jin Song, Rob Knight, Muriel Derrien, Patrick VeigaThe American Journal Of Clinical Nutrition2021-10-07
Vitamin B-12 and the Gastrointestinal Microbiome: A Systematic Review.Heather M Guetterman, Samantha L Huey, Rob Knight, Allison M Fox, Saurabh Mehta, Julia L FinkelsteinAdvances In Nutrition (Bethesda, Md.)2021-10-06
Uniform Manifold Approximation and Projection (UMAP) Reveals Composite Patterns and Resolves Visualization Artifacts in Microbiome Data.George Armstrong, Cameron Martino, Gibraan Rahman, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Gal Mishne, Rob KnightMSystems2021-10-05
Spatial metabolomics identifies localized chemical changes in heart tissue during chronic cardiac Chagas Disease.Danya A Dean, Gautham Gautham, Jair L Siqueira-Neto, James H McKerrow, Pieter C Dorrestein, Laura-Isobel McCallPLoS Neglected Tropical Diseases2021-10-04
Update on the Role of the Gut Microbiota on Alcohol-Associated Liver Disease.Bernd SchnablGastroenterology & Hepatology2021-10-04
Unique virulence role of post-translocational chaperone PrsA in shaping secretome.Zhao-Yi Wu, Anaamika Campeau, Chao-Hsien Liu, David J Gonzalez, Masaya Yamaguchi, Shigetada Kawabata, Chieh-Hsien Lu, Chian-Yu Lai, Hao-Chieh Chiu, Yung-Chi ChangVirulence2021-10-01
Iron-regulatory genes are associated with Neuroimaging measures in HIV infection.Christine Fennema-Notestine, Tricia A Thornton-Wells, Todd Hulgan, Scott Letendre, Ronald J Ellis, Donald R Franklin, Albert M Anderson, Robert K Heaton, Cinnamon S Bloss, Igor Grant, Asha R Kallianpur, Brain Imaging And Behavior2021-10-01
Dietary Neu5Ac Intervention Protects Against Atherosclerosis Associated With Human-Like Neu5Gc Loss.Kunio Kawanishi, Joanna K Coker, Kaare V Grunddal, Chirag Dhar, Jason Hsiao, Karsten Zengler, Nissi Varki, Ajit Varki, Philip L S M GordtsArteriosclerosis, Thrombosis, And Vascular Biology2021-09-30
Bacterial Membrane-Derived Vesicles Attenuate Vancomycin Activity against Methicillin-Resistant .Monika Kumaraswamy, Kamilla Wiull, Bishnu Joshi, George Sakoulas, Armin Kousha, Gustav Vaaje-Kolstad, Mona Johannessen, Kristin Hegstad, Victor Nizet, Fatemeh AskarianMicroorganisms2021-09-29
Microbial Ecology and Evolution Are Essential for Understanding Pandemics.Megan E Frederickson, Aspen T ReeseMBio2021-09-28
Determinants of SARS-CoV-2 entry and replication in airway mucosal tissue and susceptibility in smokers.Tsuguhisa Nakayama, Ivan T Lee, Sizun Jiang, Matthias S Matter, Carol H Yan, Jonathan B Overdevest, Chien-Ting Wu, Yury Goltsev, Liang-Chun Shih, Chun-Kang Liao, Bokai Zhu, Yunhao Bai, Peter Lidsky, Yinghong Xiao, David Zarabanda, Angela Yang, Meena Easwaran, Christian M Schürch, Pauline Chu, Han Chen, Anna K Stalder, David R McIlwain, Nicole A Borchard, Phil A Gall, Sachi S Dholakia, Wei Le, Le Xu, Chih-Jaan Tai, Te-Huei Yeh, Elizabeth Erickson-Direnzo, Jason M Duran, Kirsten D Mertz, Peter H Hwang, Jasmin D Haslbauer, Peter K Jackson, Thomas Menter, Raul Andino, Peter D Canoll, Adam S DeConde, Zara M Patel, Alexandar Tzankov, Garry P Nolan, Jayakar V NayakCell Reports. Medicine2021-09-28
Detection and quantification of Mycobacterium tuberculosis antigen CFP10 in serum and urine for the rapid diagnosis of active tuberculosis disease.Marva Seifert, Eva Vargas, Victor Ruiz-Valdepeñas Montiel, Joseph Wang, Timothy C Rodwell, Antonino CatanzaroScientific Reports2021-09-28
Discovery and Mechanism of SARS-CoV-2 Main Protease Inhibitors.Sarah Huff, Indrasena Reddy Kummetha, Shashi Kant Tiwari, Matthew B Huante, Alex E Clark, Shaobo Wang, William Bray, Davey Smith, Aaron F Carlin, Mark Endsley, Tariq M RanaJournal Of Medicinal Chemistry2021-09-27
SARS-CoV-2 Variants of Concern.Jun Yong Choi, Davey M SmithYonsei Medical Journal2021-09-27
RiboRid: A low cost, advanced, and ultra-efficient method to remove ribosomal RNA for bacterial transcriptomics.Donghui Choe, Richard Szubin, Saugat Poudel, Anand Sastry, Yoseb Song, Yongjae Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan ChoPLoS Genetics2021-09-27
Gut epithelial IL-27 confers intestinal immunity through the induction of intraepithelial lymphocytes.Chia-Hao Lin, Mei-Chi Chen, Ling-Li Lin, David A Christian, Booki Min, Christopher A Hunter, Li-Fan LuThe Journal Of Experimental Medicine2021-09-23
Restriction factor compendium for influenza A virus reveals a mechanism for evasion of autophagy.Laura Martin-Sancho, Shashank Tripathi, Ariel Rodriguez-Frandsen, Lars Pache, Maite Sanchez-Aparicio, Michael J McGregor, Kelsey M Haas, Danielle L Swaney, Thong T Nguyen, João I Mamede, Christopher Churas, Dexter Pratt, Sara B Rosenthal, Laura Riva, Courtney Nguyen, Nish Beltran-Raygoza, Stephen Soonthornvacharin, Guojun Wang, David Jimenez-Morales, Paul D De Jesus, Hong M Moulton, David A Stein, Max W Chang, Chris Benner, Trey Ideker, Randy A Albrecht, Judd F Hultquist, Nevan J Krogan, Adolfo García-Sastre, Sumit K ChandaNature Microbiology2021-09-23
Mass spectrometry-based metabolomics in microbiome investigations.Anelize Bauermeister, Helena Mannochio-Russo, Letícia V Costa-Lotufo, Alan K Jarmusch, Pieter C DorresteinNature Reviews. Microbiology2021-09-22
Challenges in Determining the Role of Microbiome Evolution in Barrett's Esophagus and Progression to Esophageal Adenocarcinoma.Caitlin Guccione, Rena Yadlapati, Shailja Shah, Rob Knight, Kit CurtiusMicroorganisms2021-09-22
Markers of Gut Barrier Function and Microbial Translocation Associate with Lower Gut Microbial Diversity in People with HIV.Ronald J Ellis, Jennifer E Iudicello, Robert K Heaton, Stéphane Isnard, John Lin, Jean-Pierre Routy, Sara Gianella, Martin Hoenigl, Rob KnightViruses2021-09-22
Detection of sulfate-reducing bacteria as an indicator for successful mitigation of sulfide production.Avishek Dutta, Fernando Valle, Thomas Goldman, Jeff Keating, Ellen Burke, Nicole Williamson, Reinhard Dirmeier, Jeff S BowmanApplied And Environmental Microbiology2021-09-22
Extrachromosomal DNA in HPV-Mediated Oropharyngeal Cancer Drives Diverse Oncogene Transcription.John Pang, Nam Nguyen, Jens Luebeck, Laurel Ball, Andrey Finegersh, Shuling Ren, Takuya Nakagawa, Mitchell Flagg, Sayed Sadat, Paul S Mischel, Guorong Xu, Kathleen Fisch, Theresa Guo, Gabrielle Cahill, Bharat Panuganti, Vineet Bafna, Joseph CalifanoClinical Cancer Research : An Official Journal Of The American Association For Cancer Research2021-09-21
Endothelial Heparan Sulfate Mediates Hepatic Neutrophil Trafficking and Injury during Staphylococcus aureus Sepsis.Gregory J Golden, Alejandro Gómez Toledo, Alex Marki, James T Sorrentino, Claire Morris, Raquel J Riley, Charlotte Spliid, Qiongyu Chen, Ingrid Cornax, Nathan E Lewis, Nissi Varki, Dzung Le, Johan Malmström, Christofer Karlsson, Klaus Ley, Victor Nizet, Jeffrey D EskoMBio2021-09-21
Continental-Scale Paddy Soil Bacterial Community Structure, Function, and Biotic Interaction.Hong-Yi Li, Hang Wang, Xin-Hua Tao, Xian-Zhe Wang, Wei-Zheng Jin, Jack A Gilbert, Yong-Guan Zhu, Zhi-Jian ZhangMSystems2021-09-21
Cell-intrinsic and -extrinsic roles of miRNAs in regulating T cell immunity.Sunglim Cho, Jiayi Dong, Li-Fan LuImmunological Reviews2021-09-21
Immunobiology of the Classical Lancefield Group A Streptococcal Carbohydrate Antigen.Nina J Gao, Ervin Rodas Lima, Victor NizetInfection And Immunity2021-09-20
Streptolysins are the primary inflammasome activators in macrophages during Streptococcus pyogenes infection.Johanna Richter, Mercedes M Monteleone, Amanda J Cork, Timothy C Barnett, Victor Nizet, Stephan Brouwer, Kate Schroder, Mark J WalkerImmunology And Cell Biology2021-09-18
Genetic dissection of complex traits using hierarchical biological knowledge.Hidenori Tanaka, Jason F Kreisberg, Trey IdekerPLoS Computational Biology2021-09-17
Chemical Proportionality within Molecular Networks.Daniel Petras, Andrés Mauricio Caraballo-Rodríguez, Alan K Jarmusch, Carlos Molina-Santiago, Julia M Gauglitz, Emily C Gentry, Pedro Belda-Ferre, Diego Romero, Shirley M Tsunoda, Pieter C Dorrestein, Mingxun WangAnalytical Chemistry2021-09-17
Tender and swollen joint counts are poorly associated with disability in chikungunya arthritis compared to rheumatoid arthritis.Hugh Watson, Ramão Luciano Nogueira-Hayd, Maony Rodrigues-Moreno, Felipe Naveca, Giulia Calusi, Karol Suchowiecki, Gary S Firestein, Gary Simon, Aileen Y ChangScientific Reports2021-09-17
Mechanisms for control of skin immune function by the microbiome.Teruaki Nakatsuji, Joyce Y Cheng, Richard L GalloCurrent Opinion In Immunology2021-09-16
Gut Metabolites Are More Predictive of Disease and Cohoused States than Gut Bacterial Features in a Polycystic Ovary Syndrome-Like Mouse Model.Bryan Ho, Daniel Ryback, Basilin Benson, Cayla N Mason, Pedro J Torres, Robert A Quinn, Varykina G Thackray, Scott T KelleyMSystems2021-09-14
Promises of microbiome-based therapies.Jasmohan S Bajaj, Siew C Ng, Bernd SchnablJournal Of Hepatology2021-09-13
Reduced gut microbiome diversity in people with HIV who have distal neuropathic pain.Ronald J Ellis, Robert K Heaton, Sara Gianella, Gibraan Rahman, Rob KnightThe Journal Of Pain2021-09-13
Oligosaccharides and Microbiota in Human Milk Are Interrelated at 3 Months Postpartum in a Cohort of Women with a High Prevalence of Gestational Impaired Glucose Tolerance.Lauren LeMay-Nedjelski, Chloe Yonemitsu, Michelle R Asbury, James Butcher, Sylvia H Ley, Anthony J Hanley, Alex Kiss, Sharon Unger, Julia K Copeland, Pauline W Wang, Alain Stintzi, Lars Bode, Deborah L O'ConnorThe Journal Of Nutrition2021-09-11
SARS-CoV-2 indoor air transmission is a threat that can be addressed with science.Jonathan M Samet, Thomas A Burke, Seema S Lakdawala, John J Lowe, Linsey C Marr, Kimberly A Prather, Marilee Shelton-Davenport, John VolckensProceedings Of The National Academy Of Sciences Of The United States Of America2021-09-09
Dissecting the Shared Genetic Architecture of Suicide Attempt, Psychiatric Disorders, and Known Risk Factors.Niamh Mullins, JooEun Kang, Adrian I Campos, Jonathan R I Coleman, Alexis C Edwards, Hanga Galfalvy, Daniel F Levey, Adriana Lori, Andrey Shabalin, Anna Starnawska, Mei-Hsin Su, Hunna J Watson, Mark Adams, Swapnil Awasthi, Michael Gandal, Jonathan D Hafferty, Akitoyo Hishimoto, Minsoo Kim, Satoshi Okazaki, Ikuo Otsuka, Stephan Ripke, Erin B Ware, Andrew W Bergen, Wade H Berrettini, Martin Bohus, Harry Brandt, Xiao Chang, Wei J Chen, Hsi-Chung Chen, Steven Crawford, Scott Crow, Emily DiBlasi, Philibert Duriez, Fernando Fernández-Aranda, Manfred M Fichter, Steven Gallinger, Stephen J Glatt, Philip Gorwood, Yiran Guo, Hakon Hakonarson, Katherine A Halmi, Hai-Gwo Hwu, Sonia Jain, Stéphane Jamain, Susana Jiménez-Murcia, Craig Johnson, Allan S Kaplan, Walter H Kaye, Pamela K Keel, James L Kennedy, Kelly L Klump, Dong Li, Shih-Cheng Liao, Klaus Lieb, Lisa Lilenfeld, Chih-Min Liu, Pierre J Magistretti, Christian R Marshall, James E Mitchell, Eric T Monson, Richard M Myers, Dalila Pinto, Abigail Powers, Nicolas Ramoz, Stefan Roepke, Vsevolod Rozanov, Stephen W Scherer, Christian Schmahl, Marcus Sokolowski, Michael Strober, Laura M Thornton, Janet Treasure, Ming T Tsuang, Stephanie H Witt, D Blake Woodside, Zeynep Yilmaz, Lea Zillich, Rolf Adolfsson, Ingrid Agartz, Tracy M Air, Martin Alda, Lars Alfredsson, Ole A Andreassen, Adebayo Anjorin, Vivek Appadurai, María Soler Artigas, Sandra Van der Auwera, M Helena Azevedo, Nicholas Bass, Claiton H D Bau, Bernhard T Baune, Frank Bellivier, Klaus Berger, Joanna M Biernacka, Tim B Bigdeli, Elisabeth B Binder, Michael Boehnke, Marco P Boks, Rosa Bosch, David L Braff, Richard Bryant, Monika Budde, Enda M Byrne, Wiepke Cahn, Miguel Casas, Enrique Castelao, Jorge A Cervilla, Boris Chaumette, Sven Cichon, Aiden Corvin, Nicholas Craddock, David Craig, Franziska Degenhardt, Srdjan Djurovic, Howard J Edenberg, Ayman H Fanous, Jerome C Foo, Andreas J Forstner, Mark Frye, Janice M Fullerton, Justine M Gatt, Pablo V Gejman, Ina Giegling, Hans J Grabe, Melissa J Green, Eugenio H Grevet, Maria Grigoroiu-Serbanescu, Blanca Gutierrez, Jose Guzman-Parra, Steven P Hamilton, Marian L Hamshere, Annette Hartmann, Joanna Hauser, Stefanie Heilmann-Heimbach, Per Hoffmann, Marcus Ising, Ian Jones, Lisa A Jones, Lina Jonsson, René S Kahn, John R Kelsoe, Kenneth S Kendler, Stefan Kloiber, Karestan C Koenen, Manolis Kogevinas, Bettina Konte, Marie-Odile Krebs, Mikael Landén, Jacob Lawrence, Marion Leboyer, Phil H Lee, Douglas F Levinson, Calwing Liao, Jolanta Lissowska, Susanne Lucae, Fermin Mayoral, Susan L McElroy, Patrick McGrath, Peter McGuffin, Andrew McQuillin, Sarah E Medland, Divya Mehta, Ingrid Melle, Yuri Milaneschi, Philip B Mitchell, Esther Molina, Gunnar Morken, Preben Bo Mortensen, Bertram Müller-Myhsok, Caroline Nievergelt, Vishwajit Nimgaonkar, Markus M Nöthen, Michael C O'Donovan, Roel A Ophoff, Michael J Owen, Carlos Pato, Michele T Pato, Brenda W J H Penninx, Jonathan Pimm, Giorgio Pistis, James B Potash, Robert A Power, Martin Preisig, Digby Quested, Josep Antoni Ramos-Quiroga, Andreas Reif, Marta Ribasés, Vanesa Richarte, Marcella Rietschel, Margarita Rivera, Andrea Roberts, Gloria Roberts, Guy A Rouleau, Diego L Rovaris, Dan Rujescu, Cristina Sánchez-Mora, Alan R Sanders, Peter R Schofield, Thomas G Schulze, Laura J Scott, Alessandro Serretti, Jianxin Shi, Stanley I Shyn, Lea Sirignano, Pamela Sklar, Olav B Smeland, Jordan W Smoller, Edmund J S Sonuga-Barke, Gianfranco Spalletta, John S Strauss, Beata Świątkowska, Maciej Trzaskowski, Gustavo Turecki, Laura Vilar-Ribó, John B Vincent, Henry Völzke, James T R Walters, Cynthia Shannon Weickert, Thomas W Weickert, Myrna M Weissman, Leanne M Williams, Naomi R Wray, Clement C Zai, Allison E Ashley-Koch, Jean C Beckham, Elizabeth R Hauser, Michael A Hauser, Nathan A Kimbrel, Jennifer H Lindquist, Benjamin McMahon, David W Oslin, Xuejun Qin, , , , , , , Esben Agerbo, Anders D Børglum, Gerome Breen, Annette Erlangsen, Tõnu Esko, Joel Gelernter, David M Hougaard, Ronald C Kessler, Henry R Kranzler, Qingqin S Li, Nicholas G Martin, Andrew M McIntosh, Ole Mors, Merete Nordentoft, Catherine M Olsen, David Porteous, Robert J Ursano, Danuta Wasserman, Thomas Werge, David C Whiteman, Cynthia M Bulik, Hilary Coon, Ditte Demontis, Anna R Docherty, Po-Hsiu Kuo, Cathryn M Lewis, J John Mann, Miguel E Rentería, Daniel J Smith, Eli A Stahl, Murray B Stein, Fabian Streit, Virginia Willour, Douglas M RuderferBiological Psychiatry2021-09-09
Bacterial Cytological Profiling Identifies Rhodanine-Containing PAINS Analogs as Specific Inhibitors of Thymidylate Kinase .Elizabeth T Montaño, Jason F Nideffer, Joseph Sugie, Eray Enustun, Adam B Shapiro, Hannah Tsunemoto, Alan I Derman, Kit Pogliano, Joe PoglianoJournal Of Bacteriology2021-09-08
Gut microbiota alterations in response to sleep length among African-origin adults.Na Fei, Candice Choo-Kang, Sirimon Reutrakul, Stephanie J Crowley, Dale Rae, Kweku Bedu-Addo, Jacob Plange-Rhule, Terrence E Forrester, Estelle V Lambert, Pascal Bovet, Walter Riesen, Wolfgang Korte, Amy Luke, Brian T Layden, Jack A Gilbert, Lara R DugasPloS One2021-09-08
Trivalent Subunit Vaccine Candidates for COVID-19 and Their Delivery Devices.Oscar A Ortega-Rivera, Matthew D Shin, Angela Chen, Veronique Beiss, Miguel A Moreno-Gonzalez, Miguel A Lopez-Ramirez, Maria Reynoso, Hong Wang, Brett L Hurst, Joseph Wang, Jonathan K Pokorski, Nicole F SteinmetzJournal Of The American Chemical Society2021-09-07
Vaccine genetics of IGHV1-2 VRC01-class broadly neutralizing antibody precursor naïve human B cells.Jeong Hyun Lee, Laura Toy, Justin T Kos, Yana Safonova, William R Schief, Colin Havenar-Daughton, Corey T Watson, Shane CrottyNPJ Vaccines2021-09-06
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes.George W Armstrong, Kalen Cantrell, Shi Huang, Daniel McDonald, Niina Haiminen, Anna Paola Carrieri, Qiyun Zhu, Antonio Gonzalez, Imran McGrath, Kristen Beck, Daniel Hakim, Aki S Havulinna, Guillaume Méric, Teemu Niiranen, Leo Lahti, Veikko Salomaa, Mohit Jain, Michael Inouye, Austin D Swafford, Ho-Cheol Kim, Laxmi Parida, Yoshiki Vázquez-Baeza, Rob KnightGenome Research2021-09-03
Resurgence of SARS-CoV-2 Infection in a Highly Vaccinated Health System Workforce.Jocelyn Keehner, Lucy E Horton, Nancy J Binkin, Louise C Laurent, David Pride, Christopher A Longhurst, Shira R Abeles, Francesca J TorrianiThe New England Journal Of Medicine2021-09-01
AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics.Lorenzo Casalino, Abigail C Dommer, Zied Gaieb, Emilia P Barros, Terra Sztain, Surl-Hee Ahn, Anda Trifan, Alexander Brace, Anthony T Bogetti, Austin Clyde, Heng Ma, Hyungro Lee, Matteo Turilli, Syma Khalid, Lillian T Chong, Carlos Simmerling, David J Hardy, Julio Dc Maia, James C Phillips, Thorsten Kurth, Abraham C Stern, Lei Huang, John D McCalpin, Mahidhar Tatineni, Tom Gibbs, John E Stone, Shantenu Jha, Arvind Ramanathan, Rommie E AmaroThe International Journal Of High Performance Computing Applications2021-09-01
Making Sense of a Scent-Sensing Metaphor for Microbes and Environmental Predictions.Jeff S BowmanMSystems2021-08-31
Diet and feeding pattern modulate diurnal dynamics of the ileal microbiome and transcriptome.Ana Carolina Dantas Machado, Steven D Brown, Amulya Lingaraju, Vignesh Sivaganesh, Cameron Martino, Amandine Chaix, Peng Zhao, Antonio F M Pinto, Max W Chang, R Alexander Richter, Alan Saghatelian, Alan R Saltiel, Rob Knight, Satchidananda Panda, Amir ZarrinparCell Reports2021-08-30
Structure-Based Optimization of Quinazolines as Cruzain and CATL Inhibitors.Elany Barbosa da Silva, Débora A Rocha, Isadora S Fortes, Wenqian Yang, Ludovica Monti, Jair L Siqueira-Neto, Conor R Caffrey, James McKerrow, Saulo F Andrade, Rafaela S FerreiraJournal Of Medicinal Chemistry2021-08-30
Immunohistochemical and qPCR Detection of SARS-CoV-2 in the Human Middle Ear Versus the Nasal Cavity: Case Series.Arwa Kurabi, Kwang Pak, Adam S DeConde, Allen F Ryan, Carol H YanHead And Neck Pathology2021-08-28
Airborne transmission of respiratory viruses.Chia C Wang, Kimberly A Prather, Josué Sznitman, Jose L Jimenez, Seema S Lakdawala, Zeynep Tufekci, Linsey C MarrScience (New York, N.Y.)2021-08-27
Decentralized vitamin C & D dual biosensor chip: Toward personalized immune system support.Víctor Ruiz-Valdepeñas Montiel, Juliane R Sempionatto, Eva Vargas, Eileen Bailey, Jennifer May, Andrea Bulbarello, André Düsterloh, Nathan Matusheski, Joseph WangBiosensors & Bioelectronics2021-08-26
Continuous measurements of volatile gases as detection of algae crop health.Jon S Sauer, Ryan Simkovsky, Alexia N Moore, Luis Camarda, Summer L Sherman, Kimberly A Prather, Robert S PomeroyProceedings Of The National Academy Of Sciences Of The United States Of America2021-08-25
Antibody responses induced by SHIV infection are more focused than those induced by soluble native HIV-1 envelope trimers in non-human primates.Jelle van Schooten, Marlies M van Haaren, Hui Li, Laura E McCoy, Colin Havenar-Daughton, Christopher A Cottrell, Judith A Burger, Patricia van der Woude, Leanne C Helgers, Ilhan Tomris, Celia C Labranche, David C Montefiori, Andrew B Ward, Dennis R Burton, John P Moore, Rogier W Sanders, Shane Crotty, George M Shaw, Marit J van GilsPLoS Pathogens2021-08-25
Machine Learning of Bacterial Transcriptomes Reveals Responses Underlying Differential Antibiotic Susceptibility.Anand V Sastry, Nicholas Dillon, Amitesh Anand, Saugat Poudel, Ying Hefner, Sibei Xu, Richard Szubin, Adam M Feist, Victor Nizet, Bernhard PalssonMSphere2021-08-25
Relating sinking and suspended microbial communities in the California Current Ecosystem: Digestion resistance and the contributions of phytoplankton taxa to export.Bellineth Valencia, Michael R Stukel, Andrew E Allen, John P McCrow, Ariel Rabines, Brian Palenik, Michael R LandryEnvironmental Microbiology2021-08-25
Molecular Mirror Technology Facilitates High-Throughput, Accurate SARS-CoV-2 Testing.Susan Realegeno, Sara Hash, Charlene Wong, Roland Liu, Jovan Shepherd, Robert T Schooley, David A Lipson, Frederick Fung, Suresh Menon, David T PrideMicrobiology Spectrum2021-08-25
Antibody secreting cells are critically dependent on integrin α4β7/MAdCAM-1 for intestinal recruitment and control of the microbiota during chronic colitis.Christopher J Tyler, Mauricio Guzman, Luke R Lundborg, Shaila Yeasmin, Nadia Zgajnar, Paul Jedlicka, Giorgos Bamias, Jesús Rivera-NievesMucosal Immunology2021-08-25
Aryl hydrocarbon receptor deficiency in intestinal epithelial cells aggravates alcohol-related liver disease.Minyi Qian, Jun Liu, Danyang Zhao, Pengpeng Cai, Chuyue Pan, Wenxin Jia, Yingsheng Gao, Yufei Zhang, Nan Zhang, Yinan Zhang, Quan Zhang, Dalei Wu, Chengjie Shan, Meiling Zhang, Bernd Schnabl, Song Yang, Xu Shen, Lirui WangCellular And Molecular Gastroenterology And Hepatology2021-08-25
Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo.Ye Gao, Hyun Gyu Lim, Hans Verkler, Richard Szubin, Daniel Quach, Irina Rodionova, Ke Chen, James T Yurkovich, Byung-Kwan Cho, Bernhard O PalssonNucleic Acids Research2021-08-24
Early life gut microbiota is associated with rapid infant growth in Hispanics from Southern California.Tanya L Alderete, Roshonda B Jones, Justin P Shaffer, Elizabeth A Holzhausen, William B Patterson, Elham Kazemian, Lida Chatzi, Rob Knight, Jasmine F Plows, Paige K Berger, Michael I GoranGut Microbes2021-08-23
Intestinal virome and therapeutic potential of bacteriophages in liver disease.Cynthia Hsu, Yi Duan, Derrick E Fouts, Bernd SchnablJournal Of Hepatology2021-08-23
SARS-CoV-2 escape from a highly neutralizing COVID-19 convalescent plasma.Emanuele Andreano, Giulia Piccini, Danilo Licastro, Lorenzo Casalino, Nicole V Johnson, Ida Paciello, Simeone Dal Monego, Elisa Pantano, Noemi Manganaro, Alessandro Manenti, Rachele Manna, Elisa Casa, Inesa Hyseni, Linda Benincasa, Emanuele Montomoli, Rommie E Amaro, Jason S McLellan, Rino RappuoliProceedings Of The National Academy Of Sciences Of The United States Of America2021-08-21
An integrin αEβ7-dependent mechanism of IgA transcytosis requires direct plasma cell contact with intestinal epithelium.Mauricio Guzman, Luke R Lundborg, Shaila Yeasmin, Christopher J Tyler, Nadia R Zgajnar, Vanessa Taupin, Katarzyna Dobaczewska, Zbigniew Mikulski, Giorgos Bamias, Jesús Rivera-NievesMucosal Immunology2021-08-20
Glycocalyx crowding with mucin mimetics strengthens binding of soluble and virus-associated lectins to host cell glycan receptors.Daniel J Honigfort, Meghan O Altman, Pascal Gagneux, Kamil GodulaProceedings Of The National Academy Of Sciences Of The United States Of America2021-08-19
Identification of a transcription factor, PunR, that regulates the purine and purine nucleoside transporter punC in E. coli.Irina A Rodionova, Ye Gao, Anand Sastry, Ying Hefner, Hyun Gyu Lim, Dmitry A Rodionov, Milton H Saier, Bernhard O PalssonCommunications Biology2021-08-19
Host DNA Depletion in Saliva Samples for Improved Shotgun Metagenomics.Clarisse Marotz, Cristal Zuniga, Livia Zaramela, Rob Knight, Karsten ZenglerMethods In Molecular Biology (Clifton, N.J.)2021-08-19
A novel class of TMPRSS2 inhibitors potently block SARS-CoV-2 and MERS-CoV viral entry and protect human epithelial lung cells.Matthew Mahoney, Vishnu C Damalanka, Michael A Tartell, Dong Hee Chung, André Luiz Lourenço, Dustin Pwee, Anne E Mayer Bridwell, Markus Hoffmann, Jorine Voss, Partha Karmakar, Nurit P Azouz, Andrea M Klingler, Paul W Rothlauf, Cassandra E Thompson, Melody Lee, Lidija Klampfer, Christina L Stallings, Marc E Rothenberg, Stefan Pöhlmann, Sean P J Whelan, Anthony J O'Donoghue, Charles S Craik, James W JanetkaProceedings Of The National Academy Of Sciences Of The United States Of America2021-08-18
Acremonamide, a Cyclic Pentadepsipeptide with Wound-Healing Properties Isolated from a Marine-Derived Fungus of the Genus .Sojeong Kim, Chang Wook Lee, So-Yeon Park, Ratnakar N Asolkar, Haerin Kim, Geum Jin Kim, Song Jin Oh, Youngbae Kim, Eun-Young Lee, Dong-Chan Oh, Inho Yang, Man Jeong Paik, Hyukjae Choi, Hangun Kim, Sang-Jip Nam, William FenicalJournal Of Natural Products2021-08-13
Decreased Antibody Responses to Ad26.COV2.S Relative to SARS-CoV-2 mRNA Vaccines in Patients With Inflammatory Bowel Disease.Valeriya Pozdnyakova, Gregory J Botwin, Kimia Sobhani, John Prostko, Jonathan Braun, Dermot P B Mcgovern, Gil Y Melmed, Keren Appel, Andrea Banty, Edward Feldman, Christina Ha, Rashmi Kumar, Susie Lee, Shervin Rabizadeh, Theodore Stein, Gaurav Syal, Stephan Targan, Eric Vasiliauskas, David Ziring, Philip Debbas, Melissa Hampton, Emebet Mengesha, James L Stewart, Edwin C Frias, Susan Cheng, Joseph Ebinger, Jane C Figueiredo, Brigid Boland, Aline Charabaty, Michael Chiorean, Erica Cohen, Ann Flynn, John Valentine, David Fudman, Arash Horizon, Jason Hou, Caroline Hwang, Mark Lazarev, Donald Lum, Rebecca Fausel, Swapna Reddy, Mark Mattar, Mark Metwally, Arthur Ostrov, Nimisha Parekh, Laura Raffals, Sarah Sheibani, Corey Siegel, Douglas Wolf, Ziad YounesGastroenterology2021-08-12
Microbiota and Fatty Liver Disease-the Known, the Unknown, and the Future.Sonja Lang, Bernd SchnablCell Host & Microbe2021-08-12
Risk factors for COVID-19 mortality in hospitalised children and adolescents in Brazil - Authors' reply.Eduardo A Oliveira, Enrico A Colosimo, Ana Cristina Simões E Silva, Robert H Mak, Daniella B Martelli, Ludmila R Silva, Hercílio Martelli-Júnior, Maria Christina L OliveiraThe Lancet. Child & Adolescent Health2021-08-10
Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus.Smruthi Karthikeyan, Andrew Nguyen, Daniel McDonald, Yijian Zong, Nancy Ronquillo, Junting Ren, Jingjing Zou, Sawyer Farmer, Greg Humphrey, Diana Henderson, Tara Javidi, Karen Messer, Cheryl Anderson, Robert Schooley, Natasha K Martin, Rob KnightMSystems2021-08-10
Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM.Aleksandar Antanasijevic, Leigh M Sewall, Christopher A Cottrell, Diane G Carnathan, Luis E Jimenez, Julia T Ngo, Jennifer B Silverman, Bettina Groschel, Erik Georgeson, Jinal Bhiman, Raiza Bastidas, Celia LaBranche, Joel D Allen, Jeffrey Copps, Hailee R Perrett, Kimmo Rantalainen, Fabien Cannac, Yuhe R Yang, Alba Torrents de la Peña, Rebeca Froes Rocha, Zachary T Berndsen, David Baker, Neil P King, Rogier W Sanders, John P Moore, Shane Crotty, Max Crispin, David C Montefiori, Dennis R Burton, William R Schief, Guido Silvestri, Andrew B WardNature Communications2021-08-10
Clinical Practice Guideline by the Pediatric Infectious Diseases Society and the Infectious Diseases Society of America: 2021 Guideline on Diagnosis and Management of Acute Hematogenous Osteomyelitis in Pediatrics.Charles R Woods, John S Bradley, Archana Chatterjee, Lawson A Copley, Joan Robinson, Matthew P Kronman, Antonio Arrieta, Sandra L Fowler, Christopher Harrison, Maria A Carrillo-Marquez, Sandra R Arnold, Stephen C Eppes, Laura P Stadler, Coburn H Allen, Lynnette J Mazur, C Buddy Creech, Samir S Shah, Theoklis Zaoutis, David S Feldman, Valéry LavergneJournal Of The Pediatric Infectious Diseases Society2021-08-05
Chemical Gradients of Plant Substrates in an Fungus Garden.Andrés Mauricio Caraballo-Rodríguez, Sara P Puckett, Kathleen E Kyle, Daniel Petras, Ricardo da Silva, Louis-Félix Nothias, Madeleine Ernst, Justin J J van der Hooft, Anupriya Tripathi, Mingxun Wang, Marcy J Balunas, Jonathan L Klassen, Pieter C DorresteinMSystems2021-08-03
Variation in Microbial Exposure at the Human-Animal Interface and the Implications for Microbiome-Mediated Health Outcome.Sahana Kuthyar, Aspen T ReeseMSystems2021-08-03
Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom.Aaron Oliver, Sheila Podell, Agnieszka Pinowska, Jesse C Traller, Sarah R Smith, Ryan McClure, Alex Beliaev, Pavlo Bohutskyi, Eric A Hill, Ariel Rabines, Hong Zheng, Lisa Zeigler Allen, Alan Kuo, Igor V Grigoriev, Andrew E Allen, David Hazlebeck, Eric E AllenScientific Reports2021-08-02
Sleep Disturbances are a Significant Predictor of Chikungunya Arthritis Flare Severity.Sarah R Tritsch, Richard Amdur, Liliana Encinales, Andres Cadena, Paige Fierbaugh, Geraldine Avendaño, Carlos Andres Herrera Gomez, Karol Suchowiecki, Evelyn Mendoza-Torres, Wendy Rosales, Dennys Jimenez, Carlos Alberto Perez Hernandez, Alfonso Sucerquia Hernandez, Paula Bruges Silvera, Yerlenis Galvis Crespo, Alberto David Cabana Jimenez, Jennifer Carolina Martinez Zapata, Christopher N Mores, Gary S Firestein, Gary Simon, Aileen Y ChangJournal Of Cellular Immunology2021-07-29
Comparative genomic analysis of obligately piezophilic DB21MT-5 reveals bacterial adaptation to the Challenger Deep, Mariana Trench.Wei-Jia Zhang, Chan Zhang, Siyu Zhou, Xue-Gong Li, Sophie Mangenot, Stéphanie Fouteau, Thomas Guerin, Xiao-Qing Qi, Jian Yang, Douglas H Bartlett, Long-Fei WuMicrobial Genomics2021-07-28
Oxitec and MosquitoMate in the United States: lessons for the future of gene drive mosquito control.Cynthia E Schairer, James Najera, Anthony A James, Omar S Akbari, Cinnamon S BlossPathogens And Global Health2021-07-27
Dietary selection pressures and their impact on the gut microbiome.Gertrude Ecklu-Mensah, Jack Gilbert, Suzanne DevkotaCellular And Molecular Gastroenterology And Hepatology2021-07-27
Emergence of an early SARS-CoV-2 epidemic in the United States.Mark Zeller, Karthik Gangavarapu, Catelyn Anderson, Allison R Smither, John A Vanchiere, Rebecca Rose, Daniel J Snyder, Gytis Dudas, Alexander Watts, Nathaniel L Matteson, Refugio Robles-Sikisaka, Maximilian Marshall, Amy K Feehan, Gilberto Sabino-Santos, Antoinette R Bell-Kareem, Laura D Hughes, Manar Alkuzweny, Patricia Snarski, Julia Garcia-Diaz, Rona S Scott, Lilia I Melnik, Raphaëlle Klitting, Michelle McGraw, Pedro Belda-Ferre, Peter DeHoff, Shashank Sathe, Clarisse Marotz, Nathan D Grubaugh, David J Nolan, Arnaud C Drouin, Kaylynn J Genemaras, Karissa Chao, Sarah Topol, Emily Spencer, Laura Nicholson, Stefan Aigner, Gene W Yeo, Lauge Farnaes, Charlotte A Hobbs, Louise C Laurent, Rob Knight, Emma B Hodcroft, Kamran Khan, Dahlene N Fusco, Vaughn S Cooper, Phillipe Lemey, Lauren Gardner, Susanna L Lamers, Jeremy P Kamil, Robert F Garry, Marc A Suchard, Kristian G AndersenCell2021-07-27
ACE2 Receptor-Modified Algae-Based Microrobot for Removal of SARS-CoV-2 in Wastewater.Fangyu Zhang, Zhengxing Li, Lu Yin, Qiangzhe Zhang, Nelly Askarinam, Rodolfo Mundaca-Uribe, Farshad Tehrani, Emil Karshalev, Weiwei Gao, Liangfang Zhang, Joseph WangJournal Of The American Chemical Society2021-07-22
Forming Consensus To Advance Urobiome Research.Linda Brubaker, Jean-Philippe F Gourdine, Nazema Y Siddiqui, Amanda Holland, Thomas Halverson, Roberto Limeria, David Pride, Lenore Ackerman, Catherine S Forster, Kristin M Jacobs, Krystal J Thomas-White, Catherine Putonti, Qunfeng Dong, Michael Weinstein, Emily S Lukacz, Lisa Karstens, Alan J WolfeMSystems2021-07-20
Nutritional Interventions and the Gut Microbiome in Children.Saurabh Mehta, Samantha L Huey, Daniel McDonald, Rob Knight, Julia L FinkelsteinAnnual Review Of Nutrition2021-07-20
Association Between the Urogenital Microbiome and Surgical Treatment Response in Women Undergoing Mid-urethral Sling Surgery for Mixed Urinary Incontinence.Holly E Richter, Megan U Carnes, Yuko M Komesu, Emily S Lukacz, Lily Arya, Megan Bradley, Rebecca G Rogers, Vivian W Sung, Nazema Y Siddiqui, Benjamin Carper, Donna Mazloomdoost, Darryl Dinwiddie, Marie G Gantz, American Journal Of Obstetrics And Gynecology2021-07-20
Special Collection on the Microbiome and Infection.Manuela Raffatellu, Andreas J BäumlerInfection And Immunity2021-07-19
Comparison of heat-inactivated and infectious SARS-CoV-2 across indoor surface materials shows comparable RT-qPCR viral signal intensity and persistence.Rodolfo A Salido, Victor J Cantú, Alex E Clark, Sandra L Leibel, Anahid Foroughishafiei, Anushka Saha, Abbas Hakim, Alhakam Nouri, Alma L Lastrella, Anelizze Castro-Martínez, Ashley Plascencia, Bhavika Kapadia, Bing Xia, Christopher Ruiz, Clarisse A Marotz, Daniel Maunder, Elijah S Lawrence, Elizabeth W Smoot, Emily Eisner, Evelyn S Crescini, Laura Kohn, Lizbeth Franco Vargas, Marisol Chacón, Maryann Betty, Michal Machnicki, Min Yi Wu, Nathan A Baer, Pedro Belda-Ferre, Peter De Hoff, Phoebe Seaver, R Tyler Ostrander, Rebecca Tsai, Shashank Sathe, Stefan Aigner, Sydney C Morgan, Toan T Ngo, Tom Barber, Willi Cheung, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Rebecca Fielding-Miller, Rob KnightBioRxiv : The Preprint Server For Biology2021-07-19
Dynamic Changes of the Fungal Microbiome in Alcohol Use Disorder.Phillipp Hartmann, Sonja Lang, Suling Zeng, Yi Duan, Xinlian Zhang, Yanhan Wang, Marina Bondareva, Andrey Kruglov, Derrick E Fouts, Peter Stärkel, Bernd SchnablFrontiers In Physiology2021-07-19
Portobelamides A and B and Caciqueamide, Cytotoxic Peptidic Natural Products from a sp. Marine Cyanobacterium.Ozlem Demirkiran, Jehad Almaliti, Tiago Leão, Gabriel Navarro, Tara Byrum, Frederick A Valeriote, Lena Gerwick, William H GerwickJournal Of Natural Products2021-07-16
The microbiome and prostate cancer.Juan Javier-DesLoges, Rana R McKay, Austin D Swafford, Gregory D Sepich-Poore, Rob Knight, J Kellogg ParsonsProstate Cancer And Prostatic Diseases2021-07-15
A Pilot Study of Microbial Succession in Human Rib Skeletal Remains during Terrestrial Decomposition.Heather Deel, Alexandra L Emmons, Jennifer Kiely, Franklin E Damann, David O Carter, Aaron Lynne, Rob Knight, Zhenjiang Zech Xu, Sibyl Bucheli, Jessica L MetcalfMSphere2021-07-14
Genetic regulation of nonsense-mediated decay underlies association with risk of severe COVID-19.A Rouf Banday, Megan L Stanifer, Oscar Florez-Vargas, Olusegun O Onabajo, Muhammad A Zahoor, Brenen W Papenberg, Timothy J Ring, Chia-Han Lee, Evangelos Andreakos, Evgeny Arons, Greg Barsh, Leslie G Biesecker, David L Boyle, Andrea Burnett-Hartman, Mary Carrington, Euijin Chang, Pyoeng Gyun Choe, Rex L Chrisholm, Clifton Dalgard, Jeff Edberg, Nathan Erdmann, Heather S Feigelson, Gary S Firestein, Adam J Gehring, Michelle Ho, Steven Holland, Amy A Hutchinson, Hogune Im, Michael G Ison, Hong Bin Kim, Robert J Kreitman, Bruce R Korf, Lisa Mirabello, Jennifer A Pacheco, Michael J Peluso, Daniel J Rader, David T Redden, Marylyn D Ritchie, Brooke Rosenbloom, Hanaisa P Sant Anna, Sharon Savage, Eleni Siouti, Vasiliki Triantafyllia, Joselin M Vargas, Anurag Verma, Vibha Vij, Duane R Wesemann, Meredith Yeager, Xu Yu, Yu Zhang, Steeve Boulant, Stephen J Chanock, Jordan J Feld, Ludmila Prokunina-OlssonMedRxiv : The Preprint Server For Health Sciences2021-07-13
HIV vaccinology: 2021 update.Jeong Hyun Lee, Shane CrottySeminars In Immunology2021-07-13
A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity.Gongchao Jing, Yufeng Zhang, Lu Liu, Zengbin Wang, Zheng Sun, Rob Knight, Xiaoquan Su, Jian XuMSystems2021-07-13
Artificial intelligence guided discovery of a barrier-protective therapy in inflammatory bowel disease.Debashis Sahoo, Lee Swanson, Ibrahim M Sayed, Gajanan D Katkar, Stella-Rita Ibeawuchi, Yash Mittal, Rama F Pranadinata, Courtney Tindle, Mackenzie Fuller, Dominik L Stec, John T Chang, William J Sandborn, Soumita Das, Pradipta GhoshNature Communications2021-07-12
Quick-start infrastructure for untargeted metabolomics analysis in GNPS.Tiago F Leao, Chase M Clark, Anelize Bauermeister, Emmanuel O Elijah, Emily C Gentry, Makhai Husband, Michelli F Oliveira, Nuno Bandeira, Mingxun Wang, Pieter C DorresteinNature Metabolism2021-07-09
Publisher Correction: Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery.Bahar Behsaz, Edna Bode, Alexey Gurevich, Yan-Ni Shi, Florian Grundmann, Deepa Acharya, Andrés Mauricio Caraballo-Rodríguez, Amina Bouslimani, Morgan Panitchpakdi, Annabell Linck, Changhui Guan, Julia Oh, Pieter C Dorrestein, Helge B Bode, Pavel A Pevzner, Hosein MohimaniNature Communications2021-07-08
Genome-wide CRISPR/Cas9 screening in human iPS derived cardiomyocytes uncovers novel mediators of doxorubicin cardiotoxicity.Valerie Sapp, Aitor Aguirre, Gayatri Mainkar, Jeffrey Ding, Eric Adler, Ronglih Liao, Sonia Sharma, Mohit JainScientific Reports2021-07-06
Ruminiclostridium 5, Parabacteroides distasonis, and bile acid profile are modulated by prebiotic diet and associate with facilitated sleep/clock realignment after chronic disruption of rhythms.Robert S Thompson, Michelle Gaffney, Shelby Hopkins, Tel Kelley, Antonio Gonzalez, Samuel J Bowers, Martha Hotz Vitaterna, Fred W Turek, Christine L Foxx, Christopher A Lowry, Fernando Vargas, Pieter C Dorrestein, Kenneth P Wright, Rob Knight, Monika FleshnerBrain, Behavior, And Immunity2021-07-06
Microbiome is not linked to clinical disease severity of familial Mediterranean fever in an international cohort of children.Seza Ozen, Holly L Lutz, Vanessa M Rivera, Andreas Reiff, Ezgi Deniz Batu, Edwin Anderson, Mariana Salas Garcia, Grace Aldrovandi, Tayfun Hilmi Akbaba, İlker Pazarbasi, Yelda Bilginer, Ayse Balat, Banu Balci-Peynircioglu, Jack A Gilbert, Fatma Dedeoglu, Jonathan S HausmannClinical And Experimental Rheumatology2021-07-05
Impact of SARS-CoV-2 variants on the total CD4 and CD8 T cell reactivity in infected or vaccinated individuals.Alison Tarke, John Sidney, Nils Methot, Esther Dawen Yu, Yun Zhang, Jennifer M Dan, Benjamin Goodwin, Paul Rubiro, Aaron Sutherland, Eric Wang, April Frazier, Sydney I Ramirez, Stephen A Rawlings, Davey M Smith, Ricardo da Silva Antunes, Bjoern Peters, Richard H Scheuermann, Daniela Weiskopf, Shane Crotty, Alba Grifoni, Alessandro SetteCell Reports. Medicine2021-07-02
Gut Microbiota in Liver Disease: What Do We Know and What Do We Not Know?Lu Jiang, Bernd SchnablPhysiology (Bethesda, Md.)2021-07-01
Display of the human mucinome with defined O-glycans by gene engineered cells.Rebecca Nason, Christian Büll, Andriana Konstantinidi, Lingbo Sun, Zilu Ye, Adnan Halim, Wenjuan Du, Daniel M Sørensen, Fabien Durbesson, Sanae Furukawa, Ulla Mandel, Hiren J Joshi, Leo Alexander Dworkin, Lars Hansen, Leonor David, Tina M Iverson, Barbara A Bensing, Paul M Sullam, Ajit Varki, Erik de Vries, Cornelis A M de Haan, Renaud Vincentelli, Bernard Henrissat, Sergey Y Vakhrushev, Henrik Clausen, Yoshiki NarimatsuNature Communications2021-07-01
The Relationships between HIV-1 Infection, History of Methamphetamine Use Disorder, and Soluble Biomarkers in Blood and Cerebrospinal Fluid.T Jordan Walter, Jennifer Iudicello, Debra Rosario Cookson, Donald Franklin, Bin Tang, Jared W Young, William Perry, Ronald Ellis, Robert K Heaton, Igor Grant, Arpi Minassian, Scott Letendre, On Behalf Of The Translational Methamphetamine Aids Research Center TmarcViruses2021-07-01
Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome.Shi Huang, Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu, Pedro Belda-Ferre, Yoshiki Vázquez-Baeza, Qiyun Zhu, Chenchen Ma, Congfa Li, Amir Zarrinpar, Yang-Yu Liu, Rob Knight, Jiachao ZhangMicrobiome2021-06-30
Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome.Celeste Allaband, Amulya Lingaraju, Cameron Martino, Baylee Russell, Anupriya Tripathi, Orit Poulsen, Ana Carolina Dantas Machado, Dan Zhou, Jin Xue, Emmanuel Elijah, Atul Malhotra, Pieter C Dorrestein, Rob Knight, Gabriel G Haddad, Amir ZarrinparMSystems2021-06-29
The neglected brothers come of age: B cells and cancer.Shabnam Shalapour, Michael KarinSeminars In Immunology2021-06-29
ORFograph: search for novel insecticidal protein genes in genomic and metagenomic assembly graphs.Tatiana Dvorkina, Anton Bankevich, Alexei Sorokin, Fan Yang, Boahemaa Adu-Oppong, Ryan Williams, Keith Turner, Pavel A PevznerMicrobiome2021-06-28
Associations between Afrotropical bats, eukaryotic parasites, and microbial symbionts.Holly L Lutz, Jack A Gilbert, Carl W DickMolecular Ecology2021-06-28
Microbiota Modulates Cardiac Transcriptional Responses to Intermittent Hypoxia and Hypercapnia.Dan Zhou, Jin Xue, Yukiko Miyamoto, Orit Poulsen, Lars Eckmann, Gabriel G HaddadFrontiers In Physiology2021-06-25
Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus.Henrique Machado, Yara Seif, George Sakoulas, Connor A Olson, Ying Hefner, Amitesh Anand, Ying Z Jones, Richard Szubin, Bernhard O Palsson, Victor Nizet, Adam M FeistCommunications Biology2021-06-25
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops.Matthew R Dillon, Evan Bolyen, Anja Adamov, Aeriel Belk, Emily Borsom, Zachary Burcham, Justine W Debelius, Heather Deel, Alex Emmons, Mehrbod Estaki, Chloe Herman, Christopher R Keefe, Jamie T Morton, Renato R M Oliveira, Andrew Sanchez, Anthony Simard, Yoshiki Vázquez-Baeza, Michal Ziemski, Hazuki E Miwa, Terry A Kerere, Carline Coote, Richard Bonneau, Rob Knight, Guilherme Oliveira, Piraveen Gopalasingam, Benjamin D Kaehler, Emily K Cope, Jessica L Metcalf, Michael S Robeson Ii, Nicholas A Bokulich, J Gregory CaporasoPLoS Computational Biology2021-06-24
induces maize-derived ethylene to promote virulence by engaging fungal G-protein signaling.Yong-Soon Park, Eli J Borrego, Xiquan Gao, Shawn A Christensen, Eric Schmelz, Alessandra Lanubile, Dillon A Drab, Will Cody, Huijuan Yan, Won-Bo Shim, Michael V KolomietsMolecular Plant-microbe Interactions : MPMI2021-06-24
Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth.Colton J Lloyd, Jonathan Monk, Laurence Yang, Ali Ebrahim, Bernhard O PalssonPLoS Computational Biology2021-06-23
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment.Robin Schmid, Daniel Petras, Louis-Félix Nothias, Mingxun Wang, Allegra T Aron, Annika Jagels, Hiroshi Tsugawa, Johannes Rainer, Mar Garcia-Aloy, Kai Dührkop, Ansgar Korf, Tomáš Pluskal, Zdeněk Kameník, Alan K Jarmusch, Andrés Mauricio Caraballo-Rodríguez, Kelly C Weldon, Melissa Nothias-Esposito, Alexander A Aksenov, Anelize Bauermeister, Andrea Albarracin Orio, Carlismari O Grundmann, Fernando Vargas, Irina Koester, Julia M Gauglitz, Emily C Gentry, Yannick Hövelmann, Svetlana A Kalinina, Matthew A Pendergraft, Morgan Panitchpakdi, Richard Tehan, Audrey Le Gouellec, Gajender Aleti, Helena Mannochio Russo, Birgit Arndt, Florian Hübner, Heiko Hayen, Hui Zhi, Manuela Raffatellu, Kimberly A Prather, Lihini I Aluwihare, Sebastian Böcker, Kerry L McPhail, Hans-Ulrich Humpf, Uwe Karst, Pieter C DorresteinNature Communications2021-06-22
Gut microbiota mediate the FGF21 adaptive stress response to chronic dietary protein-restriction in mice.Anthony Martin, Gertrude Ecklu-Mensah, Connie W Y Ha, Gustaf Hendrick, Donald K Layman, Jack Gilbert, Suzanne DevkotaNature Communications2021-06-22
Editorial: Regulators of a Regulator: Post-Transcriptional Regulation in Tregs.Xuyu Zhou, Li-Fan LuFrontiers In Immunology2021-06-22
The single-cell epigenomic and transcriptional landscape of immunity to influenza vaccination.Florian Wimmers, Michele Donato, Alex Kuo, Tal Ashuach, Shakti Gupta, Chunfeng Li, Mai Dvorak, Mariko Hinton Foecke, Sarah E Chang, Thomas Hagan, Sanne E De Jong, Holden T Maecker, Robbert van der Most, Peggie Cheung, Mario Cortese, Steven E Bosinger, Mark Davis, Nadine Rouphael, Shankar Subramaniam, Nir Yosef, Paul J Utz, Purvesh Khatri, Bali PulendranCell2021-06-22
Alterations in bile acid metabolizing gut microbiota and specific bile acid genes as a precision medicine to subclassify NAFLD.Na Jiao, Rohit Loomba, Zi-Huan Yang, Dingfeng Wu, Sa Fang, Richele Bettencourt, Ping Lan, Ruixin Zhu, Lixin ZhuPhysiological Genomics2021-06-21
Naturalization of the microbiota developmental trajectory of Cesarean-born neonates after vaginal seeding.Se Jin Song, Jincheng Wang, Cameron Martino, Lingjing Jiang, Wesley K Thompson, Liat Shenhav, Daniel McDonald, Clarisse Marotz, Paul R Harris, Caroll D Hernandez, Nora Henderson, Elizabeth Ackley, Deanna Nardella, Charles Gillihan, Valentina Montacuti, William Schweizer, Melanie Jay, Joan Combellick, Haipeng Sun, Izaskun Garcia-Mantrana, Fernando Gil Raga, Maria Carmen Collado, Juana I Rivera-Viñas, Maribel Campos-Rivera, Jean F Ruiz-Calderon, Rob Knight, Maria Gloria Dominguez-BelloMed (New York, N.Y.)2021-06-17
The Cocaine and Oxycodone Biobanks, Two Repositories from Genetically Diverse and Behaviorally Characterized Rats for the Study of Addiction.Lieselot L G Carrette, Giordano de Guglielmo, Marsida Kallupi, Lisa Maturin, Molly Brennan, Brent Boomhower, Dana Conlisk, Sharona Sedighim, Lani Tieu, McKenzie J Fannon, Nathan Velarde, Angelica R Martinez, Jenni Kononoff, Adam Kimbrough, Sierra Simpson, Lauren C Smith, Kokila Shankar, Francisco J Ramirez, Apurva S Chitre, Bonnie Lin, Oksana Polesskaya, Leah C Solberg Woods, Abraham A Palmer, Olivier GeorgeENeuro2021-06-17
Use of Autologous Bacteriotherapy to Treat Staphylococcus aureus in Patients With Atopic Dermatitis: A Randomized Double-blind Clinical Trial.Teruaki Nakatsuji, Richard L Gallo, Faiza Shafiq, Yun Tong, Kimberly Chun, Anna M Butcher, Joyce Y Cheng, Tissa R HataJAMA Dermatology2021-06-16
Host and gut microbial tryptophan metabolism and type 2 diabetes: an integrative analysis of host genetics, diet, gut microbiome and circulating metabolites in cohort studies.Qibin Qi, Jun Li, Bing Yu, Jee-Young Moon, Jin C Chai, Jordi Merino, Jie Hu, Miguel Ruiz-Canela, Casey Rebholz, Zheng Wang, Mykhaylo Usyk, Guo-Chong Chen, Bianca C Porneala, Wenshuang Wang, Ngoc Quynh Nguyen, Elena V Feofanova, Megan L Grove, Thomas J Wang, Robert E Gerszten, Josée Dupuis, Jordi Salas-Salvadó, Wei Bao, David L Perkins, Martha L Daviglus, Bharat Thyagarajan, Jianwen Cai, Tao Wang, JoAnn E Manson, Miguel A Martínez-González, Elizabeth Selvin, Kathryn M Rexrode, Clary B Clish, Frank B Hu, James B Meigs, Rob Knight, Robert D Burk, Eric Boerwinkle, Robert C KaplanGut2021-06-14
Colesevelam Reduces Ethanol-Induced Liver Steatosis in Humanized Gnotobiotic Mice.Noemí Cabré, Yi Duan, Cristina Llorente, Mary Conrad, Patrick Stern, Dennis Yamashita, Bernd SchnablCells2021-06-14
AI-guided discovery of the invariant host response to viral pandemics.Debashis Sahoo, Gajanan D Katkar, Soni Khandelwal, Mahdi Behroozikhah, Amanraj Claire, Vanessa Castillo, Courtney Tindle, MacKenzie Fuller, Sahar Taheri, Thomas F Rogers, Nathan Beutler, Sydney I Ramirez, Stephen A Rawlings, Victor Pretorius, Davey M Smith, Dennis R Burton, Laura E Crotty Alexander, Jason Duran, Shane Crotty, Jennifer M Dan, Soumita Das, Pradipta GhoshEBioMedicine2021-06-11
Clinical characteristics and risk factors for death among hospitalised children and adolescents with COVID-19 in Brazil: an analysis of a nationwide database.Eduardo A Oliveira, Enrico A Colosimo, Ana Cristina Simões E Silva, Robert H Mak, Daniella B Martelli, Ludmila R Silva, Hercílio Martelli-Júnior, Maria Christina L OliveiraThe Lancet. Child & Adolescent Health2021-06-11
Metformin inhibition of mitochondrial ATP and DNA synthesis abrogates NLRP3 inflammasome activation and pulmonary inflammation.Hongxu Xian, Yuan Liu, Alexandra Rundberg Nilsson, Raphaella Gatchalian, Timothy R Crother, Warren G Tourtellotte, Yi Zhang, German R Aleman-Muench, Gavin Lewis, Weixuan Chen, Sarah Kang, Melissa Luevanos, Dorit Trudler, Stuart A Lipton, Pejman Soroosh, John Teijaro, Juan Carlos de la Torre, Moshe Arditi, Michael Karin, Elsa Sanchez-LopezImmunity2021-06-10
Social network analysis and whole-genome sequencing to evaluate disease transmission in a large, dynamic population: A study of avian mycobacteriosis in zoo birds.Carmel Witte, James H Fowler, Wayne Pfeiffer, Laura L Hungerford, Josephine Braun, Jennifer Burchell, Rebecca Papendick, Bruce A RideoutPloS One2021-06-09
A segmentation clock patterns cellular differentiation in a bacterial biofilm.Kwang-Tao Chou, Dong-Yeon D Lee, Jian-Geng Chiou, Leticia Galera-Laporta, San Ly, Jordi Garcia-Ojalvo, Gürol M SüelCell2021-06-09
SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment.Clarisse Marotz, Pedro Belda-Ferre, Farhana Ali, Promi Das, Shi Huang, Kalen Cantrell, Lingjing Jiang, Cameron Martino, Rachel E Diner, Gibraan Rahman, Daniel McDonald, George Armstrong, Sho Kodera, Sonya Donato, Gertrude Ecklu-Mensah, Neil Gottel, Mariana C Salas Garcia, Leslie Y Chiang, Rodolfo A Salido, Justin P Shaffer, Mac Kenzie Bryant, Karenina Sanders, Greg Humphrey, Gail Ackermann, Niina Haiminen, Kristen L Beck, Ho-Cheol Kim, Anna Paola Carrieri, Laxmi Parida, Yoshiki Vázquez-Baeza, Francesca J Torriani, Rob Knight, Jack Gilbert, Daniel A Sweeney, Sarah M AllardMicrobiome2021-06-08
Maternal milk microbiota and oligosaccharides contribute to the infant gut microbiota assembly.Martin Frederik Laursen, Ceyda T Pekmez, Melanie Wange Larsson, Mads Vendelbo Lind, Chloe Yonemitsu, Anni Larnkjær, Christian Mølgaard, Lars Bode, Lars Ove Dragsted, Kim F Michaelsen, Tine Rask Licht, Martin Iain BahlISME Communications2021-06-07
Airborne transmission pathway for coastal water pollution.Matthew A Pendergraft, Derek J Grimes, Sarah N Giddings, Falk Feddersen, Charlotte M Beall, Christopher Lee, Mitchell V Santander, Kimberly A PratherPeerJ2021-06-07
Assessment of patient recognition of coronavirus disease 2019 (COVID-19)-associated olfactory loss and recovery: a longitudinal study.Divya P Prajapati, Bita Shahrvini, Mena Said, Shanmukha Srinivas, Adam S DeConde, Carol H YanInternational Forum Of Allergy & Rhinology2021-06-06
Coevolutionary phage training leads to greater bacterial suppression and delays the evolution of phage resistance.Joshua M Borin, Sarit Avrani, Jeffrey E Barrick, Katherine L Petrie, Justin R MeyerProceedings Of The National Academy Of Sciences Of The United States Of America2021-06-04
Mining genomes to illuminate the specialized chemistry of life.Marnix H Medema, Tristan de Rond, Bradley S MooreNature Reviews. Genetics2021-06-03
Biotechnology for secure biocontainment designs in an emerging bioeconomy.Kathleen L Arnolds, Lukas R Dahlin, Lin Ding, Chao Wu, Jianping Yu, Wei Xiong, Cristal Zuniga, Yo Suzuki, Karsten Zengler, Jeffrey G Linger, Michael T GuarnieriCurrent Opinion In Biotechnology2021-06-03
Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers.Qiyun Zhu, Qiangchuan Hou, Shi Huang, Qianying Ou, Dongxue Huo, Yoshiki Vázquez-Baeza, Chaoping Cen, Victor Cantu, Mehrbod Estaki, Haibo Chang, Pedro Belda-Ferre, Ho-Cheol Kim, Kaining Chen, Rob Knight, Jiachao ZhangThe ISME Journal2021-06-02
Compositional Differences in the Oral Microbiome of E-cigarette Users.Jessica Chopyk, Christine M Bojanowski, John Shin, Alex Moshensky, Ana Lucia Fuentes, Saniya S Bonde, Dagni Chuki, David T Pride, Laura E Crotty AlexanderFrontiers In Microbiology2021-05-31
Individuals with substance use disorders have a distinct oral microbiome pattern.Tomasz Kosciolek, Teresa A Victor, Rayus Kuplicki, Maret Rossi, Mehrbod Estaki, Gail Ackermann, , Rob Knight, Martin P PaulusBrain, Behavior, & Immunity - Health2021-05-29
Non-alcoholic Steatohepatitis and HCC in a Hyperphagic Mouse Accelerated by Western Diet.Souradipta Ganguly, German Aleman Muench, Linshan Shang, Sara Brin Rosenthal, Gibraan Rahman, Ruoyu Wang, Yanhan Wang, Hyeok Choon Kwon, Anthony M Diomino, Tatiana Kisseleva, Pejman Soorosh, Mojgan Hosseini, Rob Knight, Bernd Schnabl, David A Brenner, Debanjan DharCellular And Molecular Gastroenterology And Hepatology2021-05-29
Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery.Bahar Behsaz, Edna Bode, Alexey Gurevich, Yan-Ni Shi, Florian Grundmann, Deepa Acharya, Andrés Mauricio Caraballo-Rodríguez, Amina Bouslimani, Morgan Panitchpakdi, Annabell Linck, Changhui Guan, Julia Oh, Pieter C Dorrestein, Helge B Bode, Pavel A Pevzner, Hosein MohimaniNature Communications2021-05-28
COVID-19 Severity Potentially Modulated by Cardiovascular-Disease-Associated Immune Dysregulation.Abby C Lee, Grant Castaneda, Wei Tse Li, Chengyu Chen, Neil Shende, Jaideep Chakladar, Pam R Taub, Eric Y Chang, Weg M OngkekoViruses2021-05-28
Transmission of SARS-CoV-2: still up in the air - Authors' reply.Trisha Greenhalgh, Jose L Jimenez, Kimberly A Prather, Zeynep Tufeki, David Fisman, Robert SchooleyLancet (London, England)2021-05-28
Recurrent urinary tract infection: Association of clinical profiles with urobiome composition in women.Lindsey A Burnett, Baylie R Hochstedler, Kelly Weldon, Alan J Wolfe, Linda BrubakerNeurourology And Urodynamics2021-05-26
Bromodomain protein BRD4 directs and sustains CD8 T cell differentiation during infection.J Justin Milner, Clara Toma, Sara Quon, Kyla Omilusik, Nicole E Scharping, Anup Dey, Miguel Reina-Campos, Hongtuyet Nguyen, Adam J Getzler, Huitian Diao, Bingfei Yu, Arnaud Delpoux, Tomomi M Yoshida, Deyao Li, Jun Qi, Adam Vincek, Stephen M Hedrick, Takeshi Egawa, Ming-Ming Zhou, Shane Crotty, Keiko Ozato, Matthew E Pipkin, Ananda W GoldrathThe Journal Of Experimental Medicine2021-05-26
Structure-based protein function prediction using graph convolutional networks.Vladimir Gligorijević, P Douglas Renfrew, Tomasz Kosciolek, Julia Koehler Leman, Daniel Berenberg, Tommi Vatanen, Chris Chandler, Bryn C Taylor, Ian M Fisk, Hera Vlamakis, Ramnik J Xavier, Rob Knight, Kyunghyun Cho, Richard BonneauNature Communications2021-05-26
The quantitative metabolome is shaped by abiotic constraints.Amir Akbari, James T Yurkovich, Daniel C Zielinski, Bernhard O PalssonNature Communications2021-05-26
Kawasaki Disease Patient Stratification and Pathway Analysis Based on Host Transcriptomic and Proteomic Profiles.Heather Jackson, Stephanie Menikou, Shea Hamilton, Andrew McArdle, Chisato Shimizu, Rachel Galassini, Honglei Huang, Jihoon Kim, Adriana Tremoulet, Adam Thorne, Roman Fischer, Marien I de Jonge, Taco Kuijpers, Victoria Wright, Jane C Burns, Climent Casals-Pascual, Jethro Herberg, Mike Levin, Myrsini Kaforou, On Behalf Of The Perform ConsortiumInternational Journal Of Molecular Sciences2021-05-26
Activatable Carbocyanine Dimers for Photoacoustic and Fluorescent Detection of Protease Activity.Colman Moore, Raina M Borum, Yash Mantri, Ming Xu, Pavla Fajtová, Anthony J O'Donoghue, Jesse V JokerstACS Sensors2021-05-26
A phenotypically supervised single-cell analysis protocol to study within-cell-type heterogeneity of cultured mammalian cells.Kevin Chen, Kivilcim Ozturk, Ted Liefeld, Michael Reich, Jill P Mesirov, Hannah Carter, Stephanie I FraleySTAR Protocols2021-05-25
Sequence determinants in the cathelicidin LL37 that promote inflammation via presentation of RNA to scavenger receptors.Nikhil N Kulkarni, Alan M O'Neill, Tatsuya Dokoshi, Elizabeth W C Luo, Gerard C L Wong, Richard L GalloThe Journal Of Biological Chemistry2021-05-25
Associations of healthy food choices with gut microbiota profiles.Kari K Koponen, Aaro Salosensaari, Matti O Ruuskanen, Aki S Havulinna, Satu Männistö, Pekka Jousilahti, Joonatan Palmu, Rodolfo Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Guillaume Meric, Susan Cheng, Michael Inouye, Mohit Jain, Teemu J Niiranen, Liisa M Valsta, Rob Knight, Veikko V SalomaaThe American Journal Of Clinical Nutrition2021-05-21
Hypoxia-Inducible Factor 1 Alpha Is Dispensable for Host Defense of Group B Streptococcus Colonization and Infection.Gregory R Lum, Vicki Mercado, Diede van Ens, Victor Nizet, Jacqueline M Kimmey, Kathryn A PatrasJournal Of Innate Immunity2021-05-21
Asymmetric localization of the cell division machinery during sporulation.Kanika Khanna, Javier Lopez Garrido, Joseph Sugie, Kit Pogliano, Elizabeth VillaELife2021-05-21
SARS-CoV-2 human T cell epitopes: Adaptive immune response against COVID-19.Alba Grifoni, John Sidney, Randi Vita, Bjoern Peters, Shane Crotty, Daniela Weiskopf, Alessandro SetteCell Host & Microbe2021-05-21
Impact of Vaginal Estrogen on the Urobiome in Postmenopausal Women With Recurrent Urinary Tract Infection.Carrie E Jung, Mehrbod Estaki, Jessica Chopyk, Bryn C Taylor, Antonio Gonzalez, Daniel McDonald, Jenny Shin, Kimberly Ferrante, Erika Wasenda, Quinn Lippmann, Rob Knight, David Pride, Emily S LukaczFemale Pelvic Medicine & Reconstructive Surgery2021-05-19
Cross-reactive serum and memory B-cell responses to spike protein in SARS-CoV-2 and endemic coronavirus infection.Ge Song, Wan-Ting He, Sean Callaghan, Fabio Anzanello, Deli Huang, James Ricketts, Jonathan L Torres, Nathan Beutler, Linghang Peng, Sirena Vargas, Jon Cassell, Mara Parren, Linlin Yang, Caroline Ignacio, Davey M Smith, James E Voss, David Nemazee, Andrew B Ward, Thomas Rogers, Dennis R Burton, Raiees AndrabiNature Communications2021-05-19
Are sialic acids involved in COVID-19 pathogenesis?Chirag Dhar, Aniruddha Sasmal, Sandra Diaz, Andrea Verhagen, Hai Yu, Wanqing Li, Xi Chen, Ajit VarkiGlycobiology2021-05-14
Challenges in benchmarking metagenomic profilers.Zheng Sun, Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen, Anna Paola Carrieri, Yoshiki Vázquez-Baeza, Laxmi Parida, Ho-Cheol Kim, Rob Knight, Yang-Yu LiuNature Methods2021-05-13
Dysregulation of Glycerophosphocholines in the Cutaneous Lesion Caused by in Experimental Murine Models.Adwaita R Parab, Diane Thomas, Sharon Lostracco-Johnson, Jair L Siqueira-Neto, James H McKerrow, Pieter C Dorrestein, Laura-Isobel McCallPathogens (Basel, Switzerland)2021-05-13
Impacts of the Marine Hatchery Built Environment, Water and Feed on Mucosal Microbiome Colonization Across Ontogeny in Yellowtail Kingfish, .Jeremiah J Minich, Barbara Nowak, Abigail Elizur, Rob Knight, Stewart Fielder, Eric E AllenFrontiers In Marine Science2021-05-13
Phylogenetic analysis of the salinipostin γ-butyrolactone gene cluster uncovers new potential for bacterial signalling-molecule diversity.Kaitlin E Creamer, Yuta Kudo, Bradley S Moore, Paul R JensenMicrobial Genomics2021-05-12
Taxonomic signatures of cause-specific mortality risk in human gut microbiome.Aaro Salosensaari, Ville Laitinen, Aki S Havulinna, Guillaume Meric, Susan Cheng, Markus Perola, Liisa Valsta, Georg Alfthan, Michael Inouye, Jeramie D Watrous, Tao Long, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Mohit Jain, Pekka Jousilahti, Veikko Salomaa, Rob Knight, Leo Lahti, Teemu NiiranenNature Communications2021-05-11
Intratumoral bacteria generate a new class of therapeutically relevant tumor antigens in melanoma.Gregory D Sepich-Poore, Hannah Carter, Rob KnightCancer Cell2021-05-11
3D Visualization of Immune Cell Populations in HIV-Infected Tissues via Clearing, Immunostaining, Confocal, and Light Sheet Fluorescence Microscopy.Tongyu Zhang, Auroni Gupta, Deborah Frederick, Laura Layman, Davey M Smith, Sara Gianella, Collin KiefferJournal Of Visualized Experiments : JoVE2021-05-06
Insight into the function and evolution of the Wood-Ljungdahl pathway in Actinobacteria.Jian-Yu Jiao, Li Fu, Zheng-Shuang Hua, Lan Liu, Nimaichand Salam, Peng-Fei Liu, Ai-Ping Lv, Geng Wu, Wen-Dong Xian, Qiyun Zhu, En-Min Zhou, Bao-Zhu Fang, Aharon Oren, Brian P Hedlund, Hong-Chen Jiang, Rob Knight, Lei Cheng, Wen-Jun LiThe ISME Journal2021-05-05
METTL3 regulates viral m6A RNA modification and host cell innate immune responses during SARS-CoV-2 infection.Na Li, Hui Hui, Bill Bray, Gwendolyn Michelle Gonzalez, Mark Zeller, Kristian G Anderson, Rob Knight, Davey Smith, Yinsheng Wang, Aaron F Carlin, Tariq M RanaCell Reports2021-05-03
Presence of asymptomatic cytomegalovirus and Epstein--Barr virus DNA in blood of persons with HIV starting antiretroviral therapy is associated with non-AIDS clinical events.Sara Gianella, Carlee Moser, Andrej Vitomirov, Ashley McKhann, Laura Layman, Brianna Scott, Gemma Caballero, Steven Lada, Ronald J Bosch, Martin Hoenigl, Nell Lurain, Alan Landay, Michael M Lederman, Peter W Hunt, Davey SmithAIDS (London, England)2021-05-01
Microbes and Geriatric Mental Health: Past, Present, and Future.Eleonora D Vaccariello, Tanya T NguyenInternational Psychogeriatrics2021-04-30
Gut microbiota through an evolutionary lens.Rachel N Carmody, Amar Sarkar, Aspen T ReeseScience (New York, N.Y.)2021-04-30
Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data.Lingjing Jiang, Niina Haiminen, Anna-Paola Carrieri, Shi Huang, Yoshiki Vã Zquez-Baeza, Laxmi Parida, Ho-Cheol Kim, Austin D Swafford, Rob Knight, Loki NatarajanBiometrics2021-04-29
Unlocking capacities of viral genomics for the COVID-19 pandemic response.Sergey Knyazev, Karishma Chhugani, Varuni Sarwal, Ram Ayyala, Harman Singh, Smruthi Karthikeyan, Dhrithi Deshpande, Zoia Comarova, Angela Lu, Yuri Porozov, Aiping Wu, Malak S Abedalthagafi, Shivashankar H Nagaraj, Adam L Smith, Pavel Skums, Jason Ladner, Tommy Tsan-Yuk Lam, Nicholas C Wu, Alex Zelikovsky, Rob Knight, Keith A Crandall, Serghei MangulArXiv2021-04-28
Infant Gut Microbiome Is Enriched with Bifidobacteria longumssp. infantisin Old Order Mennoniteswith Traditional Farming Lifestyle.Antti E Seppo, Kevin Bu, Madina Jumabaeva, Juilee Thakar, RakinA Choudhury, Chloe Yonemitsu, Lars Bode, Camille A Martina, Maria Allen, Sabrina Tamburini, Enrica Piras, David S Wallach, R John Looney, Jose C Clemente, Kirsi M JärvinenAllergy2021-04-27
Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition.Clarisse Marotz, Kellen J Cavagnero, Se Jin Song, Daniel McDonald, Stephen Wandro, Greg Humphrey, MacKenzie Bryant, Gail Ackermann, Edgar Diaz, Rob KnightMSystems2021-04-27
Grincamycins P-T: Rearranged Angucyclines from the Marine Sediment-Derived sp. CNZ-748 Inhibit Cell Lines of the Rare Cancer Pseudomyxoma Peritonei.Zhuo Shang, Zachary E Ferris, Douglas Sweeney, Alexander B Chase, Chunhua Yuan, Yvonne Hui, Lukuan Hou, Ethan A Older, Dan Xue, Xiaoyu Tang, Weipeng Zhang, Prakash Nagarkatti, Mitzi Nagarkatti, Traci L Testerman, Paul R Jensen, Jie LiJournal Of Natural Products2021-04-26
Combined analysis of gut microbiota, diet and PNPLA3 polymorphism in biopsy-proven non-alcoholic fatty liver disease.Sonja Lang, Anna Martin, Xinlian Zhang, Fedja Farowski, Hilmar Wisplinghoff, Maria J G T Vehreschild, Marcin Krawczyk, Angela Nowag, Anne Kretzschmar, Claus Scholz, Philipp Kasper, Christoph Roderburg, Raphael Mohr, Frank Lammert, Frank Tacke, Bernd Schnabl, Tobias Goeser, Hans-Michael Steffen, Münevver DemirLiver International : Official Journal Of The International Association For The Study Of The Liver2021-04-25
The purine nucleoside phosphorylase pnp-1 regulates epithelial cell resistance to infection in C. elegans.Eillen Tecle, Crystal B Chhan, Latisha Franklin, Ryan S Underwood, Wendy Hanna-Rose, Emily R TroemelPLoS Pathogens2021-04-20
Adjuvanting a subunit COVID-19 vaccine to induce protective immunity.Prabhu S Arunachalam, Alexandra C Walls, Nadia Golden, Caroline Atyeo, Stephanie Fischinger, Chunfeng Li, Pyone Aye, Mary Jane Navarro, Lilin Lai, Venkata Viswanadh Edara, Katharina Röltgen, Kenneth Rogers, Lisa Shirreff, Douglas E Ferrell, Samuel Wrenn, Deleah Pettie, John C Kraft, Marcos C Miranda, Elizabeth Kepl, Claire Sydeman, Natalie Brunette, Michael Murphy, Brooke Fiala, Lauren Carter, Alexander G White, Meera Trisal, Ching-Lin Hsieh, Kasi Russell-Lodrigue, Christopher Monjure, Jason Dufour, Skye Spencer, Lara Doyle-Meyer, Rudolph P Bohm, Nicholas J Maness, Chad Roy, Jessica A Plante, Kenneth S Plante, Alex Zhu, Matthew J Gorman, Sally Shin, Xiaoying Shen, Jane Fontenot, Shakti Gupta, Derek T O'Hagan, Robbert Van Der Most, Rino Rappuoli, Robert L Coffman, David Novack, Jason S McLellan, Shankar Subramaniam, David Montefiori, Scott D Boyd, JoAnne L Flynn, Galit Alter, Francois Villinger, Harry Kleanthous, Jay Rappaport, Mehul S Suthar, Neil P King, David Veesler, Bali PulendranNature2021-04-19
Risk factors and characteristics associated with persistent smell loss in coronavirus disease 2019 (COVID-19) patients.Bita Shahrvini, Divya P Prajapati, Mena Said, Jacklyn Liu, Shanmukha Srinivas, Samuel Jayaraj, Valerie J Lund, Adam S DeConde, Matt Lechner, Carol H YanInternational Forum Of Allergy & Rhinology2021-04-17
Uremic Toxins in Organ Crosstalk.Jerome Lowenstein, Sanjay K NigamFrontiers In Medicine2021-04-16
Ten scientific reasons in support of airborne transmission of SARS-CoV-2.Trisha Greenhalgh, Jose L Jimenez, Kimberly A Prather, Zeynep Tufekci, David Fisman, Robert SchooleyLancet (London, England)2021-04-15
Urinary microbiota of women with recurrent urinary tract infection: collection and culture methods.Baylie R Hochstedler, Lindsey Burnett, Travis K Price, Carrie Jung, Alan J Wolfe, Linda BrubakerInternational Urogynecology Journal2021-04-14
Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection.Andre Mu, Daniel McDonald, Alan K Jarmusch, Cameron Martino, Caitriona Brennan, Mackenzie Bryant, Gregory C Humphrey, Julia Toronczak, Tara Schwartz, Dominic Nguyen, Gail Ackermann, Anthony D'Onofrio, Steffanie A Strathdee, Robert T Schooley, Pieter C Dorrestein, Rob Knight, Saima AslamMicrobiome2021-04-14
Neuropathic pain correlates with worsening cognition in people with human immunodeficiency virus.Ronald J Ellis, Ned Sacktor, David B Clifford, Christina M Marra, Ann C Collier, Benjamin Gelman, Jessica Robinson-Papp, Scott L Letendre, Robert K Heaton, Brain : A Journal Of Neurology2021-04-14
Functional landscape of SARS-CoV-2 cellular restriction.Laura Martin-Sancho, Mary K Lewinski, Lars Pache, Charlotte A Stoneham, Xin Yin, Mark E Becker, Dexter Pratt, Christopher Churas, Sara B Rosenthal, Sophie Liu, Stuart Weston, Paul D De Jesus, Alan M O'Neill, Anshu P Gounder, Courtney Nguyen, Yuan Pu, Heather M Curry, Aaron L Oom, Lisa Miorin, Ariel Rodriguez-Frandsen, Fan Zheng, Chunxiang Wu, Yong Xiong, Matthew Urbanowski, Megan L Shaw, Max W Chang, Christopher Benner, Thomas J Hope, Matthew B Frieman, Adolfo García-Sastre, Trey Ideker, Judd F Hultquist, John Guatelli, Sumit K ChandaMolecular Cell2021-04-13
Persistent Joint Pain Following Arthropod Virus Infections.Karol Suchowiecki, St Patrick Reid, Gary L Simon, Gary S Firestein, Aileen ChangCurrent Rheumatology Reports2021-04-13
MrHAMER yields highly accurate single molecule viral sequences enabling analysis of intra-host evolution.Christian M Gallardo, Shiyi Wang, Daniel J Montiel-Garcia, Susan J Little, Davey M Smith, Andrew L Routh, Bruce E TorbettNucleic Acids Research2021-04-13
Structural Characterization of a Minimal Antibody against Human APOBEC3B.Heng Tang, Özlem Demir, Fredy Kurniawan, William L Brown, Ke Shi, Nicholas H Moeller, Michael A Carpenter, Christopher Belica, Kayo Orellana, Guocheng Du, Aaron M LeBeau, Rommie E Amaro, Reuben S Harris, Hideki AiharaViruses2021-04-12
Marinoterpins A-C: Rare Linear Merosesterterpenoids from Marine-Derived Actinomycete Bacteria of the Family Streptomycetaceae.Min Cheol Kim, Jaclyn M Winter, Ratnakar N Asolkar, Chollaratt Boonlarppradab, Reiko Cullum, William FenicalThe Journal Of Organic Chemistry2021-04-12
Genetic suppression of lethal mutations in fatty acid biosynthesis mediated by a secondary lipid synthase.Marco N Allemann, Eric E AllenApplied And Environmental Microbiology2021-04-09
Influence of Intermittent Hypoxia/Hypercapnia on Atherosclerosis, Gut Microbiome, and Metabolome.Jin Xue, Celeste Allaband, Dan Zhou, Orit Poulsen, Cameron Martino, Lingjing Jiang, Anupriya Tripathi, Emmanuel Elijah, Pieter C Dorrestein, Rob Knight, Amir Zarrinpar, Gabriel G HaddadFrontiers In Physiology2021-04-08
Children with Autism and Their Typically Developing Siblings Differ in Amplicon Sequence Variants and Predicted Functions of Stool-Associated Microbes.Maude M David, Christine Tataru, Jena Daniels, Jessey Schwartz, Jessica Keating, Jarrad Hampton-Marcell, Neil Gottel, Jack A Gilbert, Dennis P WallMSystems2021-04-06
Structure and dynamics of SARS-CoV-2 proofreading exoribonuclease ExoN.Nicholas H Moeller, Ke Shi, Özlem Demir, Surajit Banerjee, Lulu Yin, Christopher Belica, Cameron Durfee, Rommie E Amaro, Hideki AiharaBioRxiv : The Preprint Server For Biology2021-04-04
Comparison of two nucleic acid amplification tests (NAATs) and two antigen tests for detection of SARS-CoV-2 from upper respiratory specimens.Peiting Kuo, Susan Realegeno, David T PrideJournal Of Clinical Virology Plus2021-04-03
Differential T cell reactivity to endemic coronaviruses and SARS-CoV-2 in community and health care workers.Ricardo da Silva Antunes, Suresh Pallikkuth, Erin Williams, Dawen Yu Esther, Jose Mateus, Lorenzo Quiambao, Eric Wang, Stephen A Rawlings, Daniel Stadlbauer, Kaijun Jiang, Fatima Amanat, David Arnold, David Andrews, Irma Fuego, Jennifer M Dan, Alba Grifoni, Daniela Weiskopf, Florian Krammer, Shane Crotty, Michael E Hoffer, Savita G Pahwa, Alessandro SetteThe Journal Of Infectious Diseases2021-04-02
Targeting Biofilm of MDR by Phages Using a Catheter Model.Chani Rakov, Shira Ben Porat, Sivan Alkalay-Oren, Ortal Yerushalmy, Mohanad Abdalrhman, Niv Gronovich, Lina Huang, David Pride, Shunit Coppenhagen-Glazer, Ran Nir-Paz, Ronen HazanAntibiotics (Basel, Switzerland)2021-04-02
An Introduction to Next Generation Sequencing Bioinformatic Analysis in Gut Microbiome Studies.Bei Gao, Liang Chi, Yixin Zhu, Xiaochun Shi, Pengcheng Tu, Bing Li, Jun Yin, Nan Gao, Weishou Shen, Bernd SchnablBiomolecules2021-04-02
A Clinical-Stage Cysteine Protease Inhibitor blocks SARS-CoV-2 Infection of Human and Monkey Cells.Drake M Mellott, Chien-Te Tseng, Aleksandra Drelich, Pavla Fajtová, Bala C Chenna, Demetrios H Kostomiris, Jason Hsu, Jiyun Zhu, Zane W Taylor, Klaudia I Kocurek, Vivian Tat, Ardala Katzfuss, Linfeng Li, Miriam A Giardini, Danielle Skinner, Ken Hirata, Michael C Yoon, Sungjun Beck, Aaron F Carlin, Alex E Clark, Laura Beretta, Daniel Maneval, Vivian Hook, Felix Frueh, Brett L Hurst, Hong Wang, Frank M Raushel, Anthony J O'Donoghue, Jair Lage de Siqueira-Neto, Thomas D Meek, James H McKerrowACS Chemical Biology2021-03-31
Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States.Nicole L Washington, Karthik Gangavarapu, Mark Zeller, Alexandre Bolze, Elizabeth T Cirulli, Kelly M Schiabor Barrett, Brendan B Larsen, Catelyn Anderson, Simon White, Tyler Cassens, Sharoni Jacobs, Geraint Levan, Jason Nguyen, Jimmy M Ramirez, Charlotte Rivera-Garcia, Efren Sandoval, Xueqing Wang, David Wong, Emily Spencer, Refugio Robles-Sikisaka, Ezra Kurzban, Laura D Hughes, Xianding Deng, Candace Wang, Venice Servellita, Holly Valentine, Peter De Hoff, Phoebe Seaver, Shashank Sathe, Kimberly Gietzen, Brad Sickler, Jay Antico, Kelly Hoon, Jingtao Liu, Aaron Harding, Omid Bakhtar, Tracy Basler, Brett Austin, Duncan MacCannell, Magnus Isaksson, Phillip G Febbo, David Becker, Marc Laurent, Eric McDonald, Gene W Yeo, Rob Knight, Louise C Laurent, Eileen de Feo, Michael Worobey, Charles Y Chiu, Marc A Suchard, James T Lu, William Lee, Kristian G AndersenCell2021-03-30
Thousands of previously unknown phages discovered in whole-community human gut metagenomes.Sean Benler, Natalya Yutin, Dmitry Antipov, Mikhail Rayko, Sergey Shmakov, Ayal B Gussow, Pavel Pevzner, Eugene V KooninMicrobiome2021-03-29
Outpatient Treatment of Severe Acute Respiratory Syndrome Coronavirus 2 Infection to Prevent Coronavirus Disease 2019 Progression.Myron S Cohen, David A Wohl, William A Fischer, Davey M Smith, Joseph J EronClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2021-03-28
Effects of processed meat and drinking water nitrate on oral and fecal microbial populations in a controlled feeding study.Rashmi Sinha, Ni Zhao, James J Goedert, Doratha A Byrd, Yunhu Wan, Xing Hua, Autumn G Hullings, Rob Knight, Simone van Breda, Karen Mathijs, Theo M de Kok, Mary H Ward, Environmental Research2021-03-27
The oncogene AAMDC links PI3K-AKT-mTOR signaling with metabolic reprograming in estrogen receptor-positive breast cancer.Emily Golden, Rabab Rashwan, Eleanor A Woodward, Agustin Sgro, Edina Wang, Anabel Sorolla, Charlene Waryah, Wan Jun Tie, Elisabet Cuyàs, Magdalena Ratajska, Iwona Kardaś, Piotr Kozlowski, Elizabeth K M Johnstone, Heng B See, Ciara Duffy, Jeremy Parry, Kim A Lagerborg, Piotr Czapiewski, Javier A Menendez, Adam Gorczyński, Bartosz Wasag, Kevin D G Pfleger, Christina Curtis, Bum-Kyu Lee, Jonghwan Kim, Joseph Cursons, Nathan J Pavlos, Wojciech Biernat, Mohit Jain, Andrew J Woo, Andrew Redfern, Pilar BlancafortNature Communications2021-03-26
The microbiome and human cancer.Gregory D Sepich-Poore, Laurence Zitvogel, Ravid Straussman, Jeff Hasty, Jennifer A Wargo, Rob KnightScience (New York, N.Y.)2021-03-26
Reversible -Acetyl Migration within the Sialic Acid Side Chain and Its Influence on Protein Recognition.Yang Ji, Aniruddha Sasmal, Wanqing Li, Lisa Oh, Saurabh Srivastava, Audra A Hargett, Brian R Wasik, Hai Yu, Sandra Diaz, Biswa Choudhury, Colin R Parrish, Darón I Freedberg, Lee-Ping Wang, Ajit Varki, Xi ChenACS Chemical Biology2021-03-26
Validity of 2020 vancomycin consensus recommendations and further guidance for practical application.Michael J Rybak, Jennifer Le, Thomas P Lodise, Donald P Levine, John S Bradley, Catherine Liu, Bruce A Mueller, Manjunath P Pai, Annie-Wong Beringer, Keith A Rodvold, Holly D MaplesAmerican Journal Of Health-system Pharmacy : AJHP : Official Journal Of The American Society Of Health-System Pharmacists2021-03-26
Comparison of Two Approaches for the Metataxonomic Analysis of the Human Milk Microbiome.Lorena Ruiz, Claudio Alba, Cristina García-Carral, Esther A Jiménez, Kimberly A Lackey, Michelle K McGuire, Courtney L Meehan, James Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, Debela Gindola K, Gloria E Otoo, Rossina G Pareja, Lars Bode, Mark A McGuire, Janet E Williams, Juan M RodríguezFrontiers In Cellular And Infection Microbiology2021-03-25
Association of Loneliness and Wisdom With Gut Microbial Diversity and Composition: An Exploratory Study.Tanya T Nguyen, Xinlian Zhang, Tsung-Chin Wu, Jinyuan Liu, Collin Le, Xin M Tu, Rob Knight, Dilip V JesteFrontiers In Psychiatry2021-03-25
Tandem Fluorescence Measurements of Organic Matter and Bacteria Released in Sea Spray Aerosols.Mitchell V Santander, Brock A Mitts, Matthew A Pendergraft, Julie Dinasquet, Christopher Lee, Alexia N Moore, Lucia B Cancelada, Ke'La A Kimble, Francesca Malfatti, Kimberly A PratherEnvironmental Science & Technology2021-03-23
Renal and non-renal response of ABC and SLC transporters in chronic kidney disease.Adriana M Torres, Ankur V Dnyanmote, Jeffry C Granados, Sanjay K NigamExpert Opinion On Drug Metabolism & Toxicology2021-03-22
Coordinate regulation of systemic and kidney tryptophan metabolism by the drug transporters OAT1 and OAT3.Jeffry C Granados, Anne Richelle, Jahir M Gutierrez, Patrick Zhang, Xinlian Zhang, Vibha Bhatnagar, Nathan E Lewis, Sanjay K NigamThe Journal Of Biological Chemistry2021-03-21
Driving to Safety: CRISPR-Based Genetic Approaches to Reducing Antibiotic Resistance.Ethan Bier, Victor NizetTrends In Genetics : TIG2021-03-18
Author Correction: Gut microbiome pattern reflects healthy ageing and predicts survival in humans.Tomasz Wilmanski, Christian Diener, Noa Rappaport, Sushmita Patwardhan, Jack Wiedrick, Jodi Lapidus, John C Earls, Anat Zimmer, Gustavo Glusman, Max Robinson, James T Yurkovich, Deborah M Kado, Jane A Cauley, Joseph Zmuda, Nancy E Lane, Andrew T Magis, Jennifer C Lovejoy, Leroy Hood, Sean M Gibbons, Eric S Orwoll, Nathan D PriceNature Metabolism2021-03-18
Current Paradigms of Combination Therapy in Methicillin-Resistant Staphylococcus aureus (MRSA) Bacteremia: Does it Work, Which Combination, and For Which Patients?Warren Rose, Michael Fantl, Matthew Geriak, Victor Nizet, George SakoulasClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2021-03-16
EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets.Kalen Cantrell, Marcus W Fedarko, Gibraan Rahman, Daniel McDonald, Yimeng Yang, Thant Zaw, Antonio Gonzalez, Stefan Janssen, Mehrbod Estaki, Niina Haiminen, Kristen L Beck, Qiyun Zhu, Erfan Sayyari, James T Morton, George Armstrong, Anupriya Tripathi, Julia M Gauglitz, Clarisse Marotz, Nathaniel L Matteson, Cameron Martino, Jon G Sanders, Anna Paola Carrieri, Se Jin Song, Austin D Swafford, Pieter C Dorrestein, Kristian G Andersen, Laxmi Parida, Ho-Cheol Kim, Yoshiki Vázquez-Baeza, Rob KnightMSystems2021-03-16
A Cyanobacterial Component Required for Pilus Biogenesis Affects the Exoproteome.Yevgeni Yegorov, Eleonora Sendersky, Shaul Zilberman, Elad Nagar, Hiba Waldman Ben-Asher, Eyal Shimoni, Ryan Simkovsky, Susan S Golden, Andy LiWang, Rakefet SchwarzMBio2021-03-16
SARS-CoV-2 Screening Among Symptom-Free Healthcare Workers.Ryan T Demmer, Angela K Ulrich, Talia D Wiggen, Ali Strickland, Brianna M Naumchik, Shalini Kulasingam, Steven D Stovitz, Clarisse Marotz, Pedro Belda-Ferre, Greg Humphrey, Peter De Hoff, Louise Laurent, Susan Kline, Rob KnightInfection Control And Hospital Epidemiology2021-03-12
An 11-Year-old Male With X-linked Agammaglobulinemia and Persistent Abdominal Pain.Natalie B Fettinger, John S Bradley, Nanda RamchandarThe Pediatric Infectious Disease Journal2021-03-12
Pharmacokinetics and Safety of Single-dose Tedizolid Phosphate in Children 2 to <12 Years of Age.Antonio C Arrieta, Jocelyn Y Ang, Claudia Espinosa, Oleksandr Fofanov, Camilla Tøndel, Margaret Z Chou, Carisa S De Anda, Jason Y Kim, Dan Li, Philip Sabato, Pamela S Sears, John S BradleyThe Pediatric Infectious Disease Journal2021-03-12
COVID-19 and older adults with bipolar disorder: Problems and solutions.Osvaldo P Almeida, Esther Jimenez, Soham Rej, Lisa Eyler, Martha Sajatovic, Annemiek DolsBipolar Disorders2021-03-12
Derlin rhomboid pseudoproteases employ substrate engagement and lipid distortion to enable the retrotranslocation of ERAD membrane substrates.Anahita Nejatfard, Nicholas Wauer, Satarupa Bhaduri, Adam Conn, Saroj Gourkanti, Narinderbir Singh, Tiffany Kuo, Rachel Kandel, Rommie E Amaro, Sonya E NealCell Reports2021-03-12
Cardiac Rehab in the COVID Era and Beyond: mHealth and Other Novel Opportunities.Elizabeth Epstein, Neeja Patel, Kathryn Maysent, Pam R TaubCurrent Cardiology Reports2021-03-11
Dietary factors, gut microbiota, and serum trimethylamine-N-oxide associated with cardiovascular disease in the Hispanic Community Health Study/Study of Latinos.Zhendong Mei, Guo-Chong Chen, Zheng Wang, Mykhaylo Usyk, Bing Yu, Yoshiki Vazquez Baeza, Greg Humphrey, Rodolfo Salido Benitez, Jun Li, Jessica S Williams-Nguyen, Martha L Daviglus, Lifang Hou, Jianwen Cai, Yan Zheng, Rob Knight, Robert D Burk, Eric Boerwinkle, Robert C Kaplan, Qibin QiThe American Journal Of Clinical Nutrition2021-03-11
Conjugation to Enterobactin and Salmochelin S4 Enhances the Antimicrobial Activity and Selectivity of β-Lactam Antibiotics against Nontyphoidal .Artur Sargun, Martina Sassone-Corsi, Tengfei Zheng, Manuela Raffatellu, Elizabeth M NolanACS Infectious Diseases2021-03-10
Time to Viral Rebound After Interruption of Modern Antiretroviral Therapies.Jonathan Z Li, Evgenia Aga, Ronald J Bosch, Mark Pilkinton, Eugène Kroon, Lynsay MacLaren, Michael Keefer, Lawrence Fox, Liz Barr, Edward Acosta, Jintanat Ananworanich, Robert Coombs, John W Mellors, Alan L Landay, Bernard Macatangay, Steven Deeks, Rajesh T Gandhi, Davey M SmithClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2021-03-09
Exploring the Composition and Functions of Plastic Microbiome Using Whole-Genome Sequencing.Geetika Bhagwat, Qiyun Zhu, Wayne O'Connor, Suresh Subashchandrabose, Ian Grainge, Rob Knight, Thava PalanisamiEnvironmental Science & Technology2021-03-09
Staphylococcus aureus Enters Hair Follicles Using Triacylglycerol Lipases Preserved through the Genus Staphylococcus.Kouki Nakamura, Michael R Williams, Jakub M Kwiecinski, Alexander R Horswill, Richard L GalloThe Journal Of Investigative Dermatology2021-03-09
Increased Peripheral Blood Neutrophil Activation Phenotypes and Neutrophil Extracellular Trap Formation in Critically Ill Coronavirus Disease 2019 (COVID-19) Patients: A Case Series and Review of the Literature.Jorge A Masso-Silva, Alexander Moshensky, Michael T Y Lam, Mazen F Odish, Arjun Patel, Le Xu, Emily Hansen, Samantha Trescott, Celina Nguyen, Roy Kim, Katherine Perofsky, Samantha Perera, Lauren Ma, Josephine Pham, Mark Rolfsen, Jarod Olay, John Shin, Jennifer M Dan, Robert K Abbott, Sydney Ramirez, Thomas H Alexander, Grace Y Lin, Ana Lucia Fuentes, Ira Advani, Deepti Gunge, Victor Pretorius, Atul Malhotra, Xin Sun, Jason Duran, Mark Hepokoski, Shane Crotty, Nicole G Coufal, Angela Meier, Laura E Crotty AlexanderClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2021-03-05
Disease-related mutations in PI3Kγ disrupt regulatory C-terminal dynamics and reveal a path to selective inhibitors.Manoj K Rathinaswamy, Zied Gaieb, Kaelin D Fleming, Chiara Borsari, Noah J Harris, Brandon E Moeller, Matthias P Wymann, Rommie E Amaro, John E BurkeELife2021-03-04
Proton pump inhibitor use status does not modify the microbiome signature for cirrhosis.Tae Gyu Oh, Susy M Kim, Annette R Atkins, Ruth T Yu, Michael Downes, Ronald M Evans, Rohit LoombaCell Metabolism2021-03-03
High-Throughput Wastewater SARS-CoV-2 Detection Enables Forecasting of Community Infection Dynamics in San Diego County.Smruthi Karthikeyan, Nancy Ronquillo, Pedro Belda-Ferre, Destiny Alvarado, Tara Javidi, Christopher A Longhurst, Rob KnightMSystems2021-03-02
Links between gut microbiome composition and fatty liver disease in a large population sample.Matti O Ruuskanen, Fredrik Åberg, Ville Männistö, Aki S Havulinna, Guillaume Méric, Yang Liu, Rohit Loomba, Yoshiki Vázquez-Baeza, Anupriya Tripathi, Liisa M Valsta, Michael Inouye, Pekka Jousilahti, Veikko Salomaa, Mohit Jain, Rob Knight, Leo Lahti, Teemu J NiiranenGut Microbes2021-03-02
Gut microbiota dysbiosis is associated with worse emotional states in HIV infection.Josué Pérez-Santiago, María J Marquine, Debralee Cookson, Rafael Giraud-Colón, Robert K Heaton, Igor Grant, Ronald J Ellis, Scott L Letendre, Scott N PetersonJournal Of Neurovirology2021-03-02
Bcl6-Mediated Transcriptional Regulation of Follicular Helper T cells (T).Jinyong Choi, Shane CrottyTrends In Immunology2021-03-01
Highly mutated antibodies capable of neutralizing N276 glycan-deficient HIV after a single immunization with an Env trimer.Jeong Hyun Lee, Catherine Nakao, Michael Appel, Amber Le, Elise Landais, Oleksandr Kalyuzhniy, Xiaozhen Hu, Alessia Liguori, Tina-Marie Mullen, Bettina Groschel, Robert K Abbott, Devin Sok, William R Schief, Shane CrottyCell Reports2021-02-28
Spatial variability of prokaryotic and viral abundances in the Kermadec and Atacama Trench regions.Clemens Schauberger, Mathias Middelboe, Morten Larsen, Logan M Peoples, Douglas H Bartlett, Finn Kirpekar, Ashley A Rowden, Frank Wenzhöfer, Bo Thamdrup, Ronnie N GludLimnology And Oceanography2021-02-28
Dissociation of DNA damage sensing by endoglycosidase HPSE.Alex Agelidis, Rahul K Suryawanshi, Chandrashekhar D Patil, Anaamika Campeau, David J Gonzalez, Deepak ShuklaIScience2021-02-27
Hitting the diagnostic sweet spot: Point-of-care SARS-CoV-2 salivary antigen testing with an off-the-shelf glucometer.Naveen K Singh, Partha Ray, Aaron F Carlin, Celestine Magallanes, Sydney C Morgan, Louise C Laurent, Eliah S Aronoff-Spencer, Drew A HallBiosensors & Bioelectronics2021-02-26
Associations of fecal microbial profiles with breast cancer and nonmalignant breast disease in the Ghana Breast Health Study.Doratha A Byrd, Emily Vogtmann, Zeni Wu, Yongli Han, Yunhu Wan, Joe-Nat Clegg-Lamptey, Joel Yarney, Beatrice Wiafe-Addai, Seth Wiafe, Baffour Awuah, Daniel Ansong, Kofi Nyarko, Autumn G Hullings, Xing Hua, Thomas Ahearn, James J Goedert, Jianxin Shi, Rob Knight, Jonine D Figueroa, Louise A Brinton, Montserrat Garcia-Closas, Rashmi SinhaInternational Journal Of Cancer2021-02-26
Identification of an N-acetylneuraminic acid-presenting bacteria isolated from a human microbiome.Zhen Han, Peter S Thuy-Boun, Wayne Pfeiffer, Vincent F Vartabedian, Ali Torkamani, John R Teijaro, Dennis W WolanScientific Reports2021-02-26
The Molecular Basis for Life in Extreme Environments.Nozomi Ando, Blanca Barquera, Douglas H Bartlett, Eric Boyd, Audrey A Burnim, Amanda S Byer, Daniel Colman, Richard E Gillilan, Martin Gruebele, George Makhatadze, Catherine A Royer, Everett Shock, A Joshua Wand, Maxwell B WatkinsAnnual Review Of Biophysics2021-02-26
Genomic relatedness and clinical significance of strains isolated from the urogenital tract of sexual partners.Carine R Mores, Travis K Price, Birte Wolff, Thomas Halverson, Roberto Limeira, Linda Brubaker, Elizabeth R Mueller, Catherine Putonti, Alan J WolfeMicrobial Genomics2021-02-25
Searching for host immune-microbiome mechanisms in obsessive-compulsive disorder: A narrative literature review and future directions.Emily A Troyer, Jordan N Kohn, Gertrude Ecklu-Mensah, Gajender Aleti, David R Rosenberg, Suzi HongNeuroscience And Biobehavioral Reviews2021-02-24
The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection.Fatemeh Askarian, Satoshi Uchiyama, Helen Masson, Henrik Vinther Sørensen, Ole Golten, Anne Cathrine Bunæs, Sophanit Mekasha, Åsmund Kjendseth Røhr, Eirik Kommedal, Judith Anita Ludviksen, Magnus Ø Arntzen, Benjamin Schmidt, Raymond H Zurich, Nina M van Sorge, Vincent G H Eijsink, Ute Krengel, Tom Eirik Mollnes, Nathan E Lewis, Victor Nizet, Gustav Vaaje-KolstadNature Communications2021-02-23
Intestinal α1-2-Fucosylation Contributes to Obesity and Steatohepatitis in Mice.Rongrong Zhou, Cristina Llorente, Jinling Cao, Livia S Zaramela, Suling Zeng, Bei Gao, Shang-Zhen Li, Ryan D Welch, Feng-Qing Huang, Lian-Wen Qi, Chuyue Pan, Yan Huang, Pengchen Zhou, Iris Beussen, Ying Zhang, Gregory Bryam, Oliver Fiehn, Lirui Wang, E-Hu Liu, Ruth T Yu, Michael Downes, Ronald M Evans, Karrie Goglin, Derrick E Fouts, David A Brenner, Lars Bode, Xuegong Fan, Karsten Zengler, Bernd SchnablCellular And Molecular Gastroenterology And Hepatology2021-02-22
Development of a human skin commensal microbe for bacteriotherapy of atopic dermatitis and use in a phase 1 randomized clinical trial.Teruaki Nakatsuji, Tissa R Hata, Yun Tong, Joyce Y Cheng, Faiza Shafiq, Anna M Butcher, Secilia S Salem, Samantha L Brinton, Amanda K Rudman Spergel, Keli Johnson, Brett Jepson, Agustin Calatroni, Gloria David, Marco Ramirez-Gama, Patricia Taylor, Donald Y M Leung, Richard L GalloNature Medicine2021-02-22
RAMIC: Design of a randomized, double-blind, placebo-controlled trial to evaluate the efficacy of ramipril in patients with COVID-19.Veeral Ajmera, Wesley K Thompson, Davey M Smith, Atul Malhotra, Ravindra L Mehta, Vaishal Tolia, Jeffrey Yin, Krishna Sriram, Paul A Insel, Summer Collier, Lisa Richards, Rohit LoombaContemporary Clinical Trials2021-02-22
Carbohydrates great and small, from dietary fiber to sialic acids: How glycans influence the gut microbiome and affect human health.Joanna K Coker, Oriane Moyne, Dmitry A Rodionov, Karsten ZenglerGut Microbes2021-02-22
Antimicrobial prescribing for treatment of serious infections caused by Staphylococcus aureus and methicillin-resistant Staphylococcus aureus in pediatrics: an expert review.Sean N Avedissian, Nathanial J Rhodes, Christopher L Shaffer, Lan Tran, John S Bradley, Jennifer LeExpert Review Of Anti-infective Therapy2021-02-21
Open Science Resources for the Mass Spectrometry-Based Analysis of SARS-CoV-2.Wout Bittremieux, Charlotte Adams, Kris Laukens, Pieter C Dorrestein, Nuno BandeiraJournal Of Proteome Research2021-02-19
Sensitivity of the mangrove-estuarine microbial community to aquaculture effluent.Natalia G Erazo, Jeff S BowmanIScience2021-02-18
Chemical interplay and complementary adaptative strategies toggle bacterial antagonism and co-existence.Carlos Molina-Santiago, David Vela-Corcía, Daniel Petras, Luis Díaz-Martínez, Alicia Isabel Pérez-Lorente, Sara Sopeña-Torres, John Pearson, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein, Antonio de Vicente, Diego RomeroCell Reports2021-02-18
Gut microbiome pattern reflects healthy ageing and predicts survival in humans.Tomasz Wilmanski, Christian Diener, Noa Rappaport, Sushmita Patwardhan, Jack Wiedrick, Jodi Lapidus, John C Earls, Anat Zimmer, Gustavo Glusman, Max Robinson, James T Yurkovich, Deborah M Kado, Jane A Cauley, Joseph Zmuda, Nancy E Lane, Andrew T Magis, Jennifer C Lovejoy, Leroy Hood, Sean M Gibbons, Eric S Orwoll, Nathan D PriceNature Metabolism2021-02-18
A community resource for paired genomic and metabolomic data mining.Michelle A Schorn, Stefan Verhoeven, Lars Ridder, Florian Huber, Deepa D Acharya, Alexander A Aksenov, Gajender Aleti, Jamshid Amiri Moghaddam, Allegra T Aron, Saefuddin Aziz, Anelize Bauermeister, Katherine D Bauman, Martin Baunach, Christine Beemelmanns, J Michael Beman, María Victoria Berlanga-Clavero, Alex A Blacutt, Helge B Bode, Anne Boullie, Asker Brejnrod, Tim S Bugni, Alexandra Calteau, Liu Cao, Víctor J Carrión, Raquel Castelo-Branco, Shaurya Chanana, Alexander B Chase, Marc G Chevrette, Leticia V Costa-Lotufo, Jason M Crawford, Cameron R Currie, Bart Cuypers, Tam Dang, Tristan de Rond, Alyssa M Demko, Elke Dittmann, Chao Du, Christopher Drozd, Jean-Claude Dujardin, Rachel J Dutton, Anna Edlund, David P Fewer, Neha Garg, Julia M Gauglitz, Emily C Gentry, Lena Gerwick, Evgenia Glukhov, Harald Gross, Muriel Gugger, Dulce G Guillén Matus, Eric J N Helfrich, Benjamin-Florian Hempel, Jae-Seoun Hur, Marianna Iorio, Paul R Jensen, Kyo Bin Kang, Leonard Kaysser, Neil L Kelleher, Chung Sub Kim, Ki Hyun Kim, Irina Koester, Gabriele M König, Tiago Leao, Seoung Rak Lee, Yi-Yuan Lee, Xuanji Li, Jessica C Little, Katherine N Maloney, Daniel Männle, Christian Martin H, Andrew C McAvoy, Willam W Metcalf, Hosein Mohimani, Carlos Molina-Santiago, Bradley S Moore, Michael W Mullowney, Mitchell Muskat, Louis-Félix Nothias, Ellis C O'Neill, Elizabeth I Parkinson, Daniel Petras, Jörn Piel, Emily C Pierce, Karine Pires, Raphael Reher, Diego Romero, M Caroline Roper, Michael Rust, Hamada Saad, Carmen Saenz, Laura M Sanchez, Søren Johannes Sørensen, Margherita Sosio, Roderich D Süssmuth, Douglas Sweeney, Kapil Tahlan, Regan J Thomson, Nicholas J Tobias, Amaro E Trindade-Silva, Gilles P van Wezel, Mingxun Wang, Kelly C Weldon, Fan Zhang, Nadine Ziemert, Katherine R Duncan, Max Crüsemann, Simon Rogers, Pieter C Dorrestein, Marnix H Medema, Justin J J van der HooftNature Chemical Biology2021-02-17
Quantifying Live Microbial Load in Human Saliva Samples over Time Reveals Stable Composition and Dynamic Load.Clarisse Marotz, James T Morton, Perris Navarro, Joanna Coker, Pedro Belda-Ferre, Rob Knight, Karsten ZenglerMSystems2021-02-16
Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus.St Elmo Wilken, Jonathan M Monk, Patrick A Leggieri, Christopher E Lawson, Thomas S Lankiewicz, Susanna Seppälä, Chris G Daum, Jerry Jenkins, Anna M Lipzen, Stephen J Mondo, Kerrie W Barry, Igor V Grigoriev, John K Henske, Michael K Theodorou, Bernhard O Palsson, Linda R Petzold, Michelle A O'MalleyMSystems2021-02-16
Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features.Natalya Yutin, Sean Benler, Sergei A Shmakov, Yuri I Wolf, Igor Tolstoy, Mike Rayko, Dmitry Antipov, Pavel A Pevzner, Eugene V KooninNature Communications2021-02-16
Tiny Earth: A Big Idea for STEM Education and Antibiotic Discovery.Amanda Hurley, Marc G Chevrette, Deepa D Acharya, Gabriel L Lozano, Manuel Garavito, Jen Heinritz, Luis Balderrama, Mara Beebe, Martel L DenHartog, Kamiyah Corinaldi, Renee Engels, Alyssa Gutierrez, Orli Jona, Josephine H I Putnam, Brody Rhodes, Tiffany Tsang, Simon Hernandez, Carol Bascom-Slack, Jessamina E Blum, Paul A Price, Debra Davis, Joanna Klein, Joshua Pultorak, Nora L Sullivan, Nigel J Mouncey, Pieter C Dorrestein, Sarah Miller, Nichole A Broderick, Jo HandelsmanMBio2021-02-16
Fungi-Bacteria Correlation in Alcoholic Hepatitis Patients.Bei Gao, Xinlian Zhang, Bernd SchnablToxins2021-02-14
Seroprevalence of antibodies to SARS-CoV-2 in healthcare workers: a cross-sectional study.Joseph E Ebinger, Gregory J Botwin, Christine M Albert, Mona Alotaibi, Moshe Arditi, Anders H Berg, Aleksandra Binek, Patrick Botting, Justyna Fert-Bober, Jane C Figueiredo, Jonathan D Grein, Wohaib Hasan, Mir Henglin, Shehnaz K Hussain, Mohit Jain, Sandy Joung, Michael Karin, Elizabeth H Kim, Dalin Li, Yunxian Liu, Eric Luong, Dermot P B McGovern, Akil Merchant, Noah Merin, Peggy B Miles, Margo Minissian, Trevor Trung Nguyen, Koen Raedschelders, Mohamad A Rashid, Celine E Riera, Richard V Riggs, Sonia Sharma, Sarah Sternbach, Nancy Sun, Warren G Tourtellotte, Jennifer E Van Eyk, Kimia Sobhani, Jonathan G Braun, Susan ChengBMJ Open2021-02-12
Revealing Tissue-Specific SARS-CoV-2 Infection and Host Responses using Human Stem Cell-Derived Lung and Cerebral Organoids.Shashi Kant Tiwari, Shaobo Wang, Davey Smith, Aaron F Carlin, Tariq M RanaStem Cell Reports2021-02-12
Multipathogen Analysis of IgA and IgG Antigen Specificity for Selected Pathogens in Milk Produced by Women From Diverse Geographical Regions: The INSPIRE Study.Michelle K McGuire, Arlo Z Randall, Antti E Seppo, Kirsi M Järvinen, Courtney L Meehan, Debela Gindola, Janet E Williams, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, James A Foster, Gloria E Otoo, Juan M Rodríguez, Rossina G Pareja, Lars Bode, Mark A McGuire, Joseph J CampoFrontiers In Immunology2021-02-11
Paresthesia Predicts Increased Risk of Distal Neuropathic Pain in Older People with HIV-Associated Sensory Polyneuropathy.Monica M Diaz, John R Keltner, Alan N Simmons, Donald Franklin, Raeanne C Moore, David Clifford, Ann C Collier, Benjamin B Gelman, Ph D Christina Marra, J Allen McCutchan, Susan Morgello, Ned Sacktor, Brookie Best, Christine Fennema Notestine, Sara Gianella Weibel, Igor Grant, Thomas D Marcotte, Florin Vaida, Scott Letendre, Robert Heaton, Ronald J EllisPain Medicine (Malden, Mass.)2021-02-11
Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly.Mahul Chakraborty, Arunachalam Ramaiah, Adriana Adolfi, Paige Halas, Bhagyashree Kaduskar, Luna Thanh Ngo, Suvratha Jayaprasad, Kiran Paul, Saurabh Whadgar, Subhashini Srinivasan, Suresh Subramani, Ethan Bier, Anthony A James, J J EmersonBMC Biology2021-02-10
Higher Comorbidity Burden Predicts Worsening Neurocognitive Trajectories in People with Human Immunodeficiency Virus.Ronald J Ellis, Emily Paolillo, Rowan Saloner, Robert K HeatonClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2021-02-10
IonoBiology: The functional dynamics of the intracellular metallome, with lessons from bacteria.Leticia Galera-Laporta, Colin J Comerci, Jordi Garcia-Ojalvo, Gürol M SüelCell Systems2021-02-10
Human Milk-Fed Piglets Have a Distinct Small Intestine and Circulatory Metabolome Profile Relative to That of Milk Formula-Fed Piglets.Fernanda Rosa, Katelin S Matazel, Ahmed A Elolimy, Sean H Adams, Anne Bowlin, Keith D Williams, Lars Bode, Laxmi YeruvaMSystems2021-02-09
Functional Restoration of Bacteriomes and Viromes by Fecal Microbiota Transplantation.Kosuke Fujimoto, Yasumasa Kimura, Jessica R Allegretti, Mako Yamamoto, Yao-Zhong Zhang, Kotoe Katayama, Georg Tremmel, Yunosuke Kawaguchi, Masaki Shimohigoshi, Tetsuya Hayashi, Miho Uematsu, Kiyoshi Yamaguchi, Yoichi Furukawa, Yutaka Akiyama, Rui Yamaguchi, Sheila E Crowe, Peter B Ernst, Satoru Miyano, Hiroshi Kiyono, Seiya Imoto, Satoshi UematsuGastroenterology2021-02-09
Emergence of an early SARS-CoV-2 epidemic in the United States.Mark Zeller, Karthik Gangavarapu, Catelyn Anderson, Allison R Smither, John A Vanchiere, Rebecca Rose, Daniel J Snyder, Gytis Dudas, Alexander Watts, Nathaniel L Matteson, Refugio Robles-Sikisaka, Maximilian Marshall, Amy K Feehan, Gilberto Sabino-Santos, Antoinette R Bell-Kareem, Laura D Hughes, Manar Alkuzweny, Patricia Snarski, Julia Garcia-Diaz, Rona S Scott, Lilia I Melnik, Raphaälle Klitting, Michelle McGraw, Pedro Belda-Ferre, Peter DeHoff, Shashank Sathe, Clarisse Marotz, Nathan Grubaugh, David J Nolan, Arnaud C Drouin, Kaylynn J Genemaras, Karissa Chao, Sarah Topol, Emily Spencer, Laura Nicholson, Stefan Aigner, Gene W Yeo, Lauge Farnaes, Charlotte A Hobbs, Louise C Laurent, Rob Knight, Emma B Hodcroft, Kamran Khan, Dahlene N Fusco, Vaughn S Cooper, Phillipe Lemey, Lauren Gardner, Susanna L Lamers, Jeremy P Kamil, Robert F Garry, Marc A Suchard, Kristian G AndersenMedRxiv : The Preprint Server For Health Sciences2021-02-08
Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States.Nicole L Washington, Karthik Gangavarapu, Mark Zeller, Alexandre Bolze, Elizabeth T Cirulli, Kelly M Schiabor Barrett, Brendan B Larsen, Catelyn Anderson, Simon White, Tyler Cassens, Sharoni Jacobs, Geraint Levan, Jason Nguyen, Jimmy M Ramirez, Charlotte Rivera-Garcia, Efren Sandoval, Xueqing Wang, David Wong, Emily Spencer, Refugio Robles-Sikisaka, Ezra Kurzban, Laura D Hughes, Xianding Deng, Candace Wang, Venice Servellita, Holly Valentine, Peter De Hoff, Phoebe Seaver, Shashank Sathe, Kimberly Gietzen, Brad Sickler, Jay Antico, Kelly Hoon, Jingtao Liu, Aaron Harding, Omid Bakhtar, Tracy Basler, Brett Austin, Magnus Isaksson, Phillip G Febbo, David Becker, Marc Laurent, Eric McDonald, Gene W Yeo, Rob Knight, Louise C Laurent, Eileen de Feo, Michael Worobey, Charles Chiu, Marc A Suchard, James T Lu, William Lee, Kristian G AndersenMedRxiv : The Preprint Server For Health Sciences2021-02-07
Whole genome sequencing identifies novel genetic mutations in patients with eczema herpeticum.Lianghua Bin, Claire Malley, Patricia Taylor, Meher Preethi Boorgula, Sameer Chavan, Michelle Daya, Malaika Mathias, Gautam Shankar, Nicholas Rafaels, Candelaria Vergara, Joseph Potee, Monica Campbell, Jon M Hanifin, Eric Simpson, Lynda C Schneider, Richard L Gallo, Tissa Hata, Amy S Paller, Anna De Benedetto, Lisa A Beck, Peck Y Ong, Emma Guttman-Yassky, Brittany Richers, David Baraghoshi, Ingo Ruczinski, Kathleen C Barnes, Donald Y M Leung, Rasika A MathiasAllergy2021-02-06
The sum is greater than the parts: exploiting microbial communities to achieve complex functions.Livia S Zaramela, Oriane Moyne, Manish Kumar, Cristal Zuniga, Juan D Tibocha-Bonilla, Karsten ZenglerCurrent Opinion In Biotechnology2021-02-06
Change in Fibrosis 4 Index as Predictor of High Risk of Incident Hepatocellular Carcinoma After Eradication of Hepatitis C Virus.Nobuharu Tamaki, Masayuki Kurosaki, Yutaka Yasui, Nami Mori, Keiji Tsuji, Chitomi Hasebe, Koji Joko, Takehiro Akahane, Koichiro Furuta, Haruhiko Kobashi, Hiroyuki Kimura, Hitoshi Yagisawa, Hiroyuki Marusawa, Masahiko Kondo, Yuji Kojima, Hideo Yoshida, Yasushi Uchida, Rohit Loomba, Namiki IzumiClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2021-02-05
Building biorepositories in the midst of a pandemic.Jennifer A Croker, Robin Patel, Kenneth S Campbell, Marietta Barton-Baxter, Shannon Wallet, Gary S Firestein, Robert P Kimberly, Olivier ElementoJournal Of Clinical And Translational Science2021-02-05
Breastfeed or be vaccinated-an unreasonable default recommendation.Anne Merewood, Lars Bode, Riccardo Davanzo, Rafael Perez-EscamillaLancet (London, England)2021-02-04
Current state of athalassohaline deep-sea hypersaline anoxic basin research-recommendations for future work and relevance to astrobiology.Luke A Fisher, Alexandra Pontefract, Sanjoy M Som, Christopher E Carr, Benjamin Klempay, Britney E Schmidt, Jeff S Bowman, Douglas H BartlettEnvironmental Microbiology2021-02-04
Moving Beyond the Momentum: Innovative Approaches to Clinical Trial Implementation.Cathy Eng, Emerson Y Chen, Jane Rogers, Mark Lewis, Jonathan Strosberg, Ramya Thota, Smitha Krishnamurthi, Paul Oberstein, Rang Govindarajan, Gary Buchschacher, Sandip Patel, Davendra Sohal, Taymeyah Al-Toubah, Philip Philip, Arvind Dasari, Hagan Kennecke, Stacey SteinJCO Oncology Practice2021-02-03
Promoting and Protecting Human Milk and Breastfeeding in a COVID-19 World.Diane L Spatz, Riccardo Davanzo, Janis A Müller, Rebecca Powell, Virginie Rigourd, Ann Yates, Donna T Geddes, Johannes B van Goudoever, Lars BodeFrontiers In Pediatrics2021-02-03
Decade-scale stability and change in a marine bivalve microbiome.Alexander T Neu, Ian V Hughes, Eric E Allen, Kaustuv RoyMolecular Ecology2021-02-02
Apurinic/Apyrimidinic Endonuclease 1 Restricts the Internalization of Bacteria Into Human Intestinal Epithelial Cells Through the Inhibition of Rac1.Gerco den Hartog, Lindsay D Butcher, Amber L Ablack, Laura A Pace, Jailal N G Ablack, Richard Xiong, Soumita Das, Thaddeus S Stappenbeck, Lars Eckmann, Peter B Ernst, Sheila E CroweFrontiers In Immunology2021-02-02
Independent component analysis recovers consistent regulatory signals from disparate datasets.Anand V Sastry, Alyssa Hu, David Heckmann, Saugat Poudel, Erol Kavvas, Bernhard O PalssonPLoS Computational Biology2021-02-02
Microbiota control of maternal behavior regulates early postnatal growth of offspring.Yujung Michelle Lee, Andre Mu, Martina Wallace, Jivani M Gengatharan, Annalee J Furst, Lars Bode, Christian M Metallo, Janelle S AyresScience Advances2021-01-29
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities.Justin P Shaffer, Clarisse Marotz, Pedro Belda-Ferre, Cameron Martino, Stephen Wandro, Mehrbod Estaki, Rodolfo A Salido, Carolina S Carpenter, Livia S Zaramela, Jeremiah J Minich, MacKenzie Bryant, Karenina Sanders, Serena Fraraccio, Gail Ackermann, Gregory Humphrey, Austin D Swafford, Sandrine Miller-Montgomery, Rob KnightBioTechniques2021-01-29
Identifying COVID-19 Cases and Social Groups at High Risk of Transmission: A Strategy to Reduce Community Spread.Robert A Gunn, John Bellettiere, Richard S Garfein, Kanya C Long, Nancy J Binkin, Cheryl A M AndersonPublic Health Reports (Washington, D.C. : 1974)2021-01-28
First report on prevalence of SARS-CoV-2 infection among health-care workers in Nicaragua.Jorge A Huete-Pérez, Cristiana Cabezas-Robelo, Lucía Páiz-Medina, Carlos A Hernández-Álvarez, Carlos Quant-Durán, James H McKerrowPloS One2021-01-27
More than a Pore: Nonlytic Antimicrobial Functions of Complement and Bacterial Strategies for Evasion.Elisabet Bjanes, Victor NizetMicrobiology And Molecular Biology Reviews : MMBR2021-01-27
Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases.Alison Tarke, John Sidney, Conner K Kidd, Jennifer M Dan, Sydney I Ramirez, Esther Dawen Yu, Jose Mateus, Ricardo da Silva Antunes, Erin Moore, Paul Rubiro, Nils Methot, Elizabeth Phillips, Simon Mallal, April Frazier, Stephen A Rawlings, Jason A Greenbaum, Bjoern Peters, Davey M Smith, Shane Crotty, Daniela Weiskopf, Alba Grifoni, Alessandro SetteCell Reports. Medicine2021-01-26
Absence of CCR2 reduces spontaneous intestinal tumorigenesis in the Apc mouse model.Venkatakrishna Rao Jala, Sobha Rani Bodduluri, Sweta Ghosh, Zinal Chheda, Rajbir Singh, Michelle E Smith, Paula M Chilton, Christopher J Fleming, Steven Paul Mathis, Rajesh Kumar Sharma, Rob Knight, Jun Yan, Bodduluri HaribabuInternational Journal Of Cancer2021-01-26
Pangenome Analytics Reveal Two-Component Systems as Conserved Targets in ESKAPEE Pathogens.Akanksha Rajput, Yara Seif, Kumari Sonal Choudhary, Christopher Dalldorf, Saugat Poudel, Jonathan M Monk, Bernhard O PalssonMSystems2021-01-26
Asymmetrizing an icosahedral virus capsid by hierarchical assembly of subunits with designed asymmetry.Zhongchao Zhao, Joseph Che-Yen Wang, Mi Zhang, Nicholas A Lyktey, Martin F Jarrold, Stephen C Jacobson, Adam ZlotnickNature Communications2021-01-26
Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment.Jeremiah J Minich, Farhana Ali, Clarisse Marotz, Pedro Belda-Ferre, Leslie Chiang, Justin P Shaffer, Carolina S Carpenter, Daniel McDonald, Jack Gilbert, Sarah M Allard, Eric E Allen, Rob Knight, Daniel A Sweeney, Austin D SwaffordMicrobiome2021-01-22
Metabolic differentiation and intercellular nurturing underpin bacterial endospore formation.Eammon P Riley, Javier Lopez-Garrido, Joseph Sugie, Roland B Liu, Kit PoglianoScience Advances2021-01-22
Obesogenic Programming Effects during Lactation: A Narrative Review and Conceptual Model Focusing on Underlying Mechanisms and Promising Future Research Avenues.Junilla K Larsen, Lars BodeNutrients2021-01-21
Bacterial fitness landscapes stratify based on proteome allocation associated with discrete aero-types.Ke Chen, Amitesh Anand, Connor Olson, Troy E Sandberg, Ye Gao, Nathan Mih, Bernhard O PalssonPLoS Computational Biology2021-01-19
Functional genomics and metabolomics advance the ethnobotany of the Samoan traditional medicine "matalafi".Seeseei Molimau-Samasoni, Victoria Helen Woolner, Su'emalo Talie Foliga, Katharina Robichon, Vimal Patel, Sarah K Andreassend, Jeffrey P Sheridan, Tama Te Kawa, David Gresham, Darach Miller, Daniel J Sinclair, Anne C La Flamme, Alexey V Melnik, Allegra Aron, Pieter C Dorrestein, Paul H Atkinson, Robert A Keyzers, Andrew B MunkacsiProceedings Of The National Academy Of Sciences Of The United States Of America2021-01-19
Exploring the Impact of Ketodeoxynonulosonic Acid in Host-Pathogen Interactions Using Uptake and Surface Display by Nontypeable Haemophilus influenzae.Sudeshna Saha, Alison Coady, Aniruddha Sasmal, Kunio Kawanishi, Biswa Choudhury, Hai Yu, Ricardo U Sorensen, Jaime Inostroza, Ian C Schoenhofen, Xi Chen, Anja Münster-Kühnel, Chihiro Sato, Ken Kitajima, Sanjay Ram, Victor Nizet, Ajit VarkiMBio2021-01-19
Large-scale association analyses identify host factors influencing human gut microbiome composition.Alexander Kurilshikov, Carolina Medina-Gomez, Rodrigo Bacigalupe, Djawad Radjabzadeh, Jun Wang, Ayse Demirkan, Caroline I Le Roy, Juan Antonio Raygoza Garay, Casey T Finnicum, Xingrong Liu, Daria V Zhernakova, Marc Jan Bonder, Tue H Hansen, Fabian Frost, Malte C Rühlemann, Williams Turpin, Jee-Young Moon, Han-Na Kim, Kreete Lüll, Elad Barkan, Shiraz A Shah, Myriam Fornage, Joanna Szopinska-Tokov, Zachary D Wallen, Dmitrii Borisevich, Lars Agreus, Anna Andreasson, Corinna Bang, Larbi Bedrani, Jordana T Bell, Hans Bisgaard, Michael Boehnke, Dorret I Boomsma, Robert D Burk, Annique Claringbould, Kenneth Croitoru, Gareth E Davies, Cornelia M van Duijn, Liesbeth Duijts, Gwen Falony, Jingyuan Fu, Adriaan van der Graaf, Torben Hansen, Georg Homuth, David A Hughes, Richard G Ijzerman, Matthew A Jackson, Vincent W V Jaddoe, Marie Joossens, Torben Jørgensen, Daniel Keszthelyi, Rob Knight, Markku Laakso, Matthias Laudes, Lenore J Launer, Wolfgang Lieb, Aldons J Lusis, Ad A M Masclee, Henriette A Moll, Zlatan Mujagic, Qi Qibin, Daphna Rothschild, Hocheol Shin, Søren J Sørensen, Claire J Steves, Jonathan Thorsen, Nicholas J Timpson, Raul Y Tito, Sara Vieira-Silva, Uwe Völker, Henry Völzke, Urmo Võsa, Kaitlin H Wade, Susanna Walter, Kyoko Watanabe, Stefan Weiss, Frank U Weiss, Omer Weissbrod, Harm-Jan Westra, Gonneke Willemsen, Haydeh Payami, Daisy M A E Jonkers, Alejandro Arias Vasquez, Eco J C de Geus, Katie A Meyer, Jakob Stokholm, Eran Segal, Elin Org, Cisca Wijmenga, Hyung-Lae Kim, Robert C Kaplan, Tim D Spector, Andre G Uitterlinden, Fernando Rivadeneira, Andre Franke, Markus M Lerch, Lude Franke, Serena Sanna, Mauro D'Amato, Oluf Pedersen, Andrew D Paterson, Robert Kraaij, Jeroen Raes, Alexandra ZhernakovaNature Genetics2021-01-18
Airborne Transmission of SARS-CoV-2: What We Know.Jonathan M Samet, Kimberly Prather, Georges Benjamin, Seema Lakdawala, John-Martin Lowe, Arthur Reingold, John Volckens, Linsey MarrClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2021-01-18
Microbiome Signatures in a Fast- and Slow-Progressing Gastric Cancer Murine Model and Their Contribution to Gastric Carcinogenesis.Prerna Bali, Joanna Coker, Ivonne Lozano-Pope, Karsten Zengler, Marygorret ObonyoMicroorganisms2021-01-17
Novel Models of Colonization and Disease Reveal Modest Contributions of M-Like (SCM) Protein.Ingrid Cornax, Jacob Zulk, Joshua Olson, Marcus Fulde, Victor Nizet, Kathryn A PatrasMicroorganisms2021-01-16
Differential T cell reactivity to seasonal coronaviruses and SARS-CoV-2 in community and health care workers.Ricardo da Silva Antunes, Suresh Pallikkuth, Erin Williams, Esther Dawen Yu, Jose Mateus, Lorenzo Quiambao, Eric Wang, Stephen A Rawlings, Daniel Stadlbauer, Kaijun Jiang, Fatima Amanat, David Arnold, David Andrews, Irma Fuego, Jennifer M Dan, Alba Grifoni, Daniela Weiskopf, Florian Krammer, Shane Crotty, Michael E Hoffer, Savita G Pahwa, Alessandro SetteMedRxiv : The Preprint Server For Health Sciences2021-01-15
New Developments in Microbiome in Alcohol-Associated and Nonalcoholic Fatty Liver Disease.Phillipp Hartmann, Bernd SchnablSeminars In Liver Disease2021-01-14
Enterobactin- and salmochelin-β-lactam conjugates induce cell morphologies consistent with inhibition of penicillin-binding proteins in uropathogenic CFT073.Artur Sargun, Timothy C Johnstone, Hui Zhi, Manuela Raffatellu, Elizabeth M NolanChemical Science2021-01-13
A Novel N4-Like Bacteriophage Isolated from a Wastewater Source in South India with Activity against Several Multidrug-Resistant Clinical Pseudomonas aeruginosa Isolates.Nitasha D Menon, Megha S Kumar, T G Satheesh Babu, Sucharita Bose, Gayathri Vijayakumar, Manasi Baswe, Meghna Chatterjee, Jovita Rowena D'Silva, Kavya Shetty, Jayalekshmi Haripriyan, Anil Kumar, Samitha Nair, Priyanka Somanath, Bipin G Nair, Victor Nizet, Geetha B KumarMSphere2021-01-13
Adaptive immunity to SARS-CoV-2 and COVID-19.Alessandro Sette, Shane CrottyCell2021-01-12
Early detection of tumor cells in bone marrow and peripheral blood in a fast‑progressing gastric cancer model.Prerna Bali, Ivonne Lozano-Pope, Collin Pachow, Marygorret ObonyoInternational Journal Of Oncology2021-01-12
Skin inflammation activates intestinal stromal fibroblasts and promotes colitis.Tatsuya Dokoshi, Jason S Seidman, Kellen J Cavagnero, Fengwu Li, Marc C Liggins, Bryn C Taylor, Jocelyn Olvera, Rob Knight, John T Chang, Nita H Salzman, Richard L GalloThe Journal Of Clinical Investigation2021-01-12
Viral speciation through subcellular genetic isolation and virogenesis incompatibility.Vorrapon Chaikeeratisak, Erica A Birkholz, Amy M Prichard, MacKennon E Egan, Avani Mylvara, Poochit Nonejuie, Katrina T Nguyen, Joseph Sugie, Justin R Meyer, Joe PoglianoNature Communications2021-01-12
Exposure to Epstein Barr virus and cognitive functioning in individuals with schizophrenia.Faith Dickerson, Emily Katsafanas, Andrea Origoni, Amalia Squire, Sunil Khushalani, Theresa Newman, Kelly Rowe, Cassie Stallings, Christina L G Savage, Kevin Sweeney, Tanya T Nguyen, Alan Breier, Donald Goff, Glen Ford, Lorraine Jones-Brando, Robert YolkenSchizophrenia Research2021-01-12
Ticagrelor Increases Platelet-Mediated Staphylococcus aureus Killing, Resulting in Clearance of Bacteremia.Erlinda R Ulloa, Satoshi Uchiyama, Robert Gillespie, Victor Nizet, George SakoulasThe Journal Of Infectious Diseases2021-01-11
High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing.Søren M Karst, Ryan M Ziels, Rasmus H Kirkegaard, Emil A Sørensen, Daniel McDonald, Qiyun Zhu, Rob Knight, Mads AlbertsenNature Methods2021-01-11
Gut Microbial Ecosystem in Parkinson Disease: New Clinicobiological Insights from Multi-Omics.Ai Huey Tan, Chun Wie Chong, Shen-Yang Lim, Ivan Kok Seng Yap, Cindy Shuan Ju Teh, Mun Fai Loke, Sze-Looi Song, Jiun Yan Tan, Ban Hong Ang, Yong Qi Tan, Mee Teck Kho, Jeff Bowman, Sanjiv Mahadeva, Hoi Sen Yong, Anthony E LangAnnals Of Neurology2021-01-11
HiDeF: identifying persistent structures in multiscale 'omics data.Fan Zheng, She Zhang, Christopher Churas, Dexter Pratt, Ivet Bahar, Trey IdekerGenome Biology2021-01-07
Immunological memory to SARS-CoV-2 assessed for up to 8 months after infection.Jennifer M Dan, Jose Mateus, Yu Kato, Kathryn M Hastie, Esther Dawen Yu, Caterina E Faliti, Alba Grifoni, Sydney I Ramirez, Sonya Haupt, April Frazier, Catherine Nakao, Vamseedhar Rayaprolu, Stephen A Rawlings, Bjoern Peters, Florian Krammer, Viviana Simon, Erica Ollmann Saphire, Davey M Smith, Daniela Weiskopf, Alessandro Sette, Shane CrottyScience (New York, N.Y.)2021-01-06
Chronically elevated depressive symptoms interact with acute increases in inflammation to predict worse neurocognition among people with HIV.Rowan Saloner, Emily W Paolillo, Robert K Heaton, David J Grelotti, Murray B Stein, Andrew H Miller, J Hampton Atkinson, Scott L Letendre, Ronald J Ellis, Igor Grant, Jennifer E Iudicello, David J MooreJournal Of Neurovirology2021-01-06
A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria.Tiago Leão, Mingxun Wang, Nathan Moss, Ricardo da Silva, Jon Sanders, Sergey Nurk, Alexey Gurevich, Gregory Humphrey, Raphael Reher, Qiyun Zhu, Pedro Belda-Ferre, Evgenia Glukhov, Syrena Whitner, Kelsey L Alexander, Robert Rex, Pavel Pevzner, Pieter C Dorrestein, Rob Knight, Nuno Bandeira, William H Gerwick, Lena GerwickMarine Drugs2021-01-06
Systems and synthetic biology to elucidate secondary metabolite biosynthetic gene clusters encoded in genomes.Namil Lee, Soonkyu Hwang, Woori Kim, Yongjae Lee, Ji Hun Kim, Suhyung Cho, Hyun Uk Kim, Yeo Joon Yoon, Min-Kyu Oh, Bernhard O Palsson, Byung-Kwan ChoNatural Product Reports2021-01-05
Effects of Immunization With the Soil-Derived Bacterium on Stress Coping Behaviors and Cognitive Performance in a "Two Hit" Stressor Model.Christine L Foxx, Jared D Heinze, Antonio González, Fernando Vargas, Michael V Baratta, Ahmed I Elsayed, Jessica R Stewart, Kelsey M Loupy, Mathew R Arnold, M C Flux, Saydie A Sago, Philip H Siebler, Lauren N Milton, Margaret W Lieb, James E Hassell, David G Smith, Kyo A K Lee, Sandra A Appiah, Evan J Schaefer, Morgan Panitchpakdi, Nicole C Sikora, Kelly C Weldon, Christopher E Stamper, Dominic Schmidt, David A Duggan, Yosan M Mengesha, Mikale Ogbaselassie, Kadi T Nguyen, Chloe A Gates, K'loni Schnabel, Linh Tran, Joslynn D Jones, Martha H Vitaterna, Fred W Turek, Monika Fleshner, Pieter C Dorrestein, Rob Knight, Kenneth P Wright, Christopher A LowryFrontiers In Physiology2021-01-05
Microbiome for Mars: surveying microbiome connections to healthcare with implications for long-duration human spaceflight, virtual workshop, July 13, 2020.Michael LaPelusa, Dorit Donoviel, Sergio E Branzini, Paul E Carlson, Stephanie Culler, Amrita K Cheema, Rima Kaddurah-Daouk, Denise Kelly, Isabelle de Cremoux, Rob Knight, Rosa Krajmalnik-Brown, Stephen L Mayo, Sarkis K Mazmanian, Emeran A Mayer, Joseph F Petrosino, Keith GarrisonMicrobiome2021-01-04
Reply to: Examining microbe-metabolite correlations by linear methods.James T Morton, Daniel McDonald, Alexander A Aksenov, Louis Felix Nothias, James R Foulds, Robert A Quinn, Michelle H Badri, Tami L Swenson, Marc W Van Goethem, Trent R Northen, Yoshiki Vazquez-Baeza, Mingxun Wang, Nicholas A Bokulich, Aaron Watters, Se Jin Song, Richard Bonneau, Pieter C Dorrestein, Rob KnightNature Methods2021-01-04
Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater.Daniel Petras, Jeremiah J Minich, Lucia B Cancelada, Ralph R Torres, Emily Kunselman, Mingxun Wang, Margot E White, Eric E Allen, Kimberly A Prather, Lihini I Aluwihare, Pieter C DorresteinChemosphere2021-01-02
COVID-19 and Cancer Comorbidity: Therapeutic Opportunities and Challenges.Anup S Pathania, Philip Prathipati, Bakrudeen Aa Abdul, Srinivas Chava, Santharam S Katta, Subash C Gupta, Pandu R Gangula, Manoj K Pandey, Donald L Durden, Siddappa N Byrareddy, Kishore B ChallagundlaTheranostics2021-01-01
COVID19 - Computational Chemists Meet the Moment.Adrian J Mulholland, Rommie E AmaroJournal Of Chemical Information And Modeling2020-12-31
Pathophysiology of Inflammatory Bowel Diseases.John T ChangThe New England Journal Of Medicine2020-12-31
Genomics Links Inflammation with Neurocognitive Impairment in Children Living with Human Immunodeficiency Virus type-1.Pratima Rawat, Sean S Brummel, Kumud K Singh, Jihoon Kim, Kelly A Frazer, Sharon Nichols, George R Seage Iii, Paige L Williams, Russell B Van Dyke, Olivier Harismendy, Rodney N Trout, Stephen A Spector, The Journal Of Infectious Diseases2020-12-29
SARS-CoV-2 escape from a highly neutralizing COVID-19 convalescent plasma.Emanuele Andreano, Giulia Piccini, Danilo Licastro, Lorenzo Casalino, Nicole V Johnson, Ida Paciello, Simeone Dal Monego, Elisa Pantano, Noemi Manganaro, Alessandro Manenti, Rachele Manna, Elisa Casa, Inesa Hyseni, Linda Benincasa, Emanuele Montomoli, Rommie E Amaro, Jason S McLellan, Rino RappuoliBioRxiv : The Preprint Server For Biology2020-12-28
Data-driven noise modeling of digital DNA melting analysis enables prediction of sequence discriminating power.Lennart Langouche, April Aralar, Mridu Sinha, Shelley M Lawrence, Stephanie I Fraley, Todd P ColemanBioinformatics (Oxford, England)2020-12-23
Screening and characterization of polyhydroxyalkanoate granules, and phylogenetic analysis of polyhydroxyalkanoate synthase gene PhaC in cyanobacteria.Karl Hong, Joris Beld, Tony D Davis, Michael D Burkart, Brian PalenikJournal Of Phycology2020-12-22
Natural Products with Potential to Treat RNA Virus Pathogens Including SARS-CoV-2.Mitchell P Christy, Yoshinori Uekusa, Lena Gerwick, William H GerwickJournal Of Natural Products2020-12-22
Application of the Relationship-Based Model to Engagement for Field Trials of Genetically Engineered Malaria Vectors.Ana Kormos, Gregory C Lanzaro, Ethan Bier, George Dimopoulos, John M Marshall, João Pinto, Adionilde Aguiar Dos Santos, Affane Bacar, Herodes Sousa Pontes Sacramento Rompão, Anthony A JamesThe American Journal Of Tropical Medicine And Hygiene2020-12-21
Immunological memory to SARS-CoV-2 assessed for up to eight months after infection.Jennifer M Dan, Jose Mateus, Yu Kato, Kathryn M Hastie, Esther Dawen Yu, Caterina E Faliti, Alba Grifoni, Sydney I Ramirez, Sonya Haupt, April Frazier, Catherine Nakao, Vamseedhar Rayaprolu, Stephen A Rawlings, Bjoern Peters, Florian Krammer, Viviana Simon, Erica Ollmann Saphire, Davey M Smith, Daniela Weiskopf, Alessandro Sette, Shane CrottyBioRxiv : The Preprint Server For Biology2020-12-18
Coinfection and infection duration shape how pathogens affect the African buffalo gut microbiota.Kate A Sabey, Se Jin Song, Anna Jolles, Rob Knight, Vanessa O EzenwaThe ISME Journal2020-12-17
Harnessing Iron Acquisition Machinery to Target Enterobacteriaceae.Artur Sargun, Romana R Gerner, Manuela Raffatellu, Elizabeth M NolanThe Journal Of Infectious Diseases2020-12-17
Maternal diet alters human milk oligosaccharide composition with implications for the milk metagenome.Maxim D Seferovic, Mahmoud Mohammad, Ryan M Pace, Melinda Engevik, James Versalovic, Lars Bode, Morey Haymond, Kjersti M AagaardScientific Reports2020-12-16
Human milk oligosaccharide DSLNT and gut microbiome in preterm infants predicts necrotising enterocolitis.Andrea C Masi, Nicholas D Embleton, Christopher A Lamb, Gregory Young, Claire L Granger, Julia Najera, Daniel P Smith, Kristi L Hoffman, Joseph F Petrosino, Lars Bode, Janet E Berrington, Christopher J StewartGut2020-12-16
Genome-scale determination of 5´ and 3´ boundaries of RNA transcripts in Streptomyces genomes.Yongjae Lee, Namil Lee, Soonkyu Hwang, Woori Kim, Yujin Jeong, Suhyung Cho, Bernhard O Palsson, Byung-Kwan ChoScientific Data2020-12-15
Gut microbiome directs hepatocytes to recruit MDSC and promote cholangiocarcinoma.Qianfei Zhang, Chi Ma, Yi Duan, Bernd Heinrich, Umberto Rosato, Laurence P Diggs, Lichun Ma, Soumen Roy, Qiong Fu, Zachary J Brown, Simon Wabitsch, Vishal Thovarai, Jianyang Fu, Dechun Feng, Benjamin Ruf, Linda L Cui, Varun Subramanyam, Karen M Frank, Sophie Wang, David E Kleiner, Thomas Ritz, Christian Rupp, Bin Gao, Thomas Longerich, Alexander Kroemer, Xin Wei Wang, Mathuros Ruchirawat, Firouzeh Korangy, Bernd Schnabl, Giorgio Trinchieri, Tim F GretenCancer Discovery2020-12-15
Gut microbiome, liver immunology, and liver diseases.Rui Wang, Ruqi Tang, Bo Li, Xiong Ma, Bernd Schnabl, Herbert TilgCellular & Molecular Immunology2020-12-14
The Commensal Microbe Veillonella as a Marker for Response to an FGF19 Analog in NASH.Rohit Loomba, Lei Ling, Duy M Dinh, Alex M DePaoli, Hsiao D Lieu, Stephen A Harrison, Arun J SanyalHepatology (Baltimore, Md.)2020-12-11
Machine learning uncovers independently regulated modules in the Bacillus subtilis transcriptome.Kevin Rychel, Anand V Sastry, Bernhard O PalssonNature Communications2020-12-11
Gut dysbiosis as a driver in alcohol-induced liver injury.Bradley Fairfield, Bernd SchnablJHEP Reports : Innovation In Hepatology2020-12-10
Identification of a Novel Susceptibility Marker for SARS-CoV-2 Infection in Human Subjects and Risk Mitigation with a Clinically Approved JAK Inhibitor in Human/Mouse Cells.Marianne R Spalinger, Rong Hai, Jiang Li, Alina N Santos, Tara M Nordgren, Michel L Tremblay, Lars Eckmann, Elaine Hanson, Michael Scharl, Xiwei Wu, Brigid S Boland, Declan F McColeBioRxiv : The Preprint Server For Biology2020-12-09
Effects of Extended Postmortem Interval on Microbial Communities in Organs of the Human Cadaver.Holly Lutz, Alexandria Vangelatos, Neil Gottel, Antonio Osculati, Silvia Visona, Sheree J Finley, Jack A Gilbert, Gulnaz T JavanFrontiers In Microbiology2020-12-08
Neonatal Diet Impacts the Large Intestine Luminal Metabolome at Weaning and Post-Weaning in Piglets Fed Formula or Human Milk.Fernanda Rosa, Katelin S Matazel, Anne K Bowlin, Keith D Williams, Ahmed A Elolimy, Sean H Adams, Lars Bode, Laxmi YeruvaFrontiers In Immunology2020-12-07
The Gut Microbiome, Aging, and Longevity: A Systematic Review.Varsha D Badal, Eleonora D Vaccariello, Emily R Murray, Kasey E Yu, Rob Knight, Dilip V Jeste, Tanya T NguyenNutrients2020-12-07
Short chain fatty acids produced by Cutibacterium acnes inhibit biofilm formation by Staphylococcus epidermidis.Kouki Nakamura, Alan M O'Neill, Michael R Williams, Laura Cau, Teruaki Nakatsuji, Alexander R Horswill, Richard L GalloScientific Reports2020-12-04
Understanding Microbial Community Dynamics in Up-Flow Bioreactors to Improve Mitigation Strategies for Oil Souring.Avishek Dutta, Ben Smith, Thomas Goldman, Leanne Walker, Matthew Streets, Bob Eden, Reinhard Dirmeier, Jeff S BowmanFrontiers In Microbiology2020-12-03
Multiplexed CRISPR/CAS9-mediated engineering of pre-clinical mouse models bearing native human B cell receptors.Xuesong Wang, Rashmi Ray, Sven Kratochvil, Eleonora Melzi, Ying-Cing Lin, Sophie Giguere, Liling Xu, John Warner, Diane Cheon, Alessia Liguori, Bettina Groschel, Nicole Phelps, Yumiko Adachi, Ryan Tingle, Lin Wu, Shane Crotty, Kathrin H Kirsch, Usha Nair, William R Schief, Facundo D BatistaThe EMBO Journal2020-12-01
Erratum for Rivera-Hernandez et al., "An Experimental Group A Vaccine That Reduces Pharyngitis and Tonsillitis in a Nonhuman Primate Model".Tania Rivera-Hernandez, Diane G Carnathan, Scott Jones, Amanda J Cork, Mark R Davies, Peter M Moyle, Istvan Toth, Michael R Batzloff, James McCarthy, Victor Nizet, David Goldblatt, Guido Silvestri, Mark J WalkerMBio2020-12-01
A multiscale coarse-grained model of the SARS-CoV-2 virion.Alvin Yu, Alexander J Pak, Peng He, Viviana Monje-Galvan, Lorenzo Casalino, Zied Gaieb, Abigail C Dommer, Rommie E Amaro, Gregory A VothBiophysical Journal2020-11-28
Survival of the weakest in non-transitive asymmetric interactions among strains of E. coli.Michael J Liao, Arianna Miano, Chloe B Nguyen, Lin Chao, Jeff HastyNature Communications2020-11-27
Role of Epigenetics in the Regulation of Immune Functions of the Skin.Yu Sawada, Richard L GalloThe Journal Of Investigative Dermatology2020-11-27
Vitamin D metabolites and the gut microbiome in older men.Robert L Thomas, Lingjing Jiang, John S Adams, Zhenjiang Zech Xu, Jian Shen, Stefan Janssen, Gail Ackermann, Dirk Vanderschueren, Steven Pauwels, Rob Knight, Eric S Orwoll, Deborah M KadoNature Communications2020-11-26
Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules.Jonathon L Baker, James T Morton, Márcia Dinis, Ruth Alvarez, Nini C Tran, Rob Knight, Anna EdlundGenome Research2020-11-25
Cell-free DNA (cfDNA) and Exosome Profiling from a Year-Long Human Spaceflight Reveals Circulating Biomarkers.Daniela Bezdan, Kirill Grigorev, Cem Meydan, Fanny A Pelissier Vatter, Michele Cioffi, Varsha Rao, Matthew MacKay, Kiichi Nakahira, Philip Burnham, Ebrahim Afshinnekoo, Craig Westover, Daniel Butler, Chris Mozsary, Timothy Donahoe, Jonathan Foox, Tejaswini Mishra, Serena Lucotti, Brinda K Rana, Ari M Melnick, Haiying Zhang, Irina Matei, David Kelsen, Kenneth Yu, David C Lyden, Lynn Taylor, Susan M Bailey, Michael P Snyder, Francine E Garrett-Bakelman, Stephan Ossowski, Iwijn De Vlaminck, Christopher E MasonIScience2020-11-25
Hindering triple negative breast cancer progression by targeting endogenous interleukin-30 requires IFNγ signaling.Carlo Sorrentino, Stefania Livia Ciummo, Luigi D'Antonio, Paola Lanuti, Scott I Abrams, Zhinan Yin, Li-Fan Lu, Emma Di CarloClinical And Translational Medicine2020-11-24
Microbiome of the Aerodigestive Tract in Health and Esophageal Disease.Aws Hasan, Laith K Hasan, Bernd Schnabl, Madeline Greytak, Rena YadlapatiDigestive Diseases And Sciences2020-11-24
Expansion of Gamma-Butyrolactone Signaling Molecule Biosynthesis to Phosphotriester Natural Products.Yuta Kudo, Takayoshi Awakawa, Yi-Ling Du, Peter A Jordan, Kaitlin E Creamer, Paul R Jensen, Roger G Linington, Katherine S Ryan, Bradley S MooreACS Chemical Biology2020-11-24
Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra.Kai Dührkop, Louis-Félix Nothias, Markus Fleischauer, Raphael Reher, Marcus Ludwig, Martin A Hoffmann, Daniel Petras, William H Gerwick, Juho Rousu, Pieter C Dorrestein, Sebastian BöckerNature Biotechnology2020-11-23
Spatial and temporal variations in Synechococcus microdiversity in the Southern California coastal ecosystem.Maitreyi Nagarkar, Maggie Wang, Bellineth Valencia, Brian PalenikEnvironmental Microbiology2020-11-23
Triclosan leads to dysregulation of the metabolic regulator FGF21 exacerbating high fat diet-induced nonalcoholic fatty liver disease.Mei-Fei Yueh, Feng He, Chen Chen, Catherine Vu, Anupriya Tripathi, Rob Knight, Michael Karin, Shujuan Chen, Robert H TukeyProceedings Of The National Academy Of Sciences Of The United States Of America2020-11-23
AI-Driven Multiscale Simulations Illuminate Mechanisms of SARS-CoV-2 Spike Dynamics.Lorenzo Casalino, Abigail Dommer, Zied Gaieb, Emilia P Barros, Terra Sztain, Surl-Hee Ahn, Anda Trifan, Alexander Brace, Anthony Bogetti, Heng Ma, Hyungro Lee, Matteo Turilli, Syma Khalid, Lillian Chong, Carlos Simmerling, David J Hardy, Julio D C Maia, James C Phillips, Thorsten Kurth, Abraham Stern, Lei Huang, John McCalpin, Mahidhar Tatineni, Tom Gibbs, John E Stone, Shantenu Jha, Arvind Ramanathan, Rommie E AmaroBioRxiv : The Preprint Server For Biology2020-11-20
Multiomics Analysis Provides Insight into the Laboratory Evolution of toward the Metabolic Usage of Fluorinated Indoles.Federica Agostini, Ludwig Sinn, Daniel Petras, Christian J Schipp, Vladimir Kubyshkin, Allison Ann Berger, Pieter C Dorrestein, Juri Rappsilber, Nediljko Budisa, Beate KokschACS Central Science2020-11-20
"[It] is now my responsibility to fulfill that wish:" Clinical and rapid autopsy staff members' experiences and perceptions of HIV reservoir research at the end of life.Kelly E Perry, Jeff Taylor, Hursch Patel, Sogol Stephanie Javadi, Kushagra Mathur, Andy Kaytes, Susanna Concha-Garcia, Susan Little, Davey Smith, Sara Gianella, Karine DubéPloS One2020-11-18
Targeting the renin-angiotensin signaling pathway in COVID-19: Unanswered questions, opportunities, and challenges.Krishna Sriram, Rohit Loomba, Paul A InselProceedings Of The National Academy Of Sciences Of The United States Of America2020-11-17
Targeting pathobionts for the treatment of alcohol-associated liver disease.Sonja Lang, Münevver Demir, Bernd SchnablLiver International : Official Journal Of The International Association For The Study Of The Liver2020-11-17
Effective Human Immunodeficiency Virus Molecular Surveillance Requires Identification of Incident Cases of Infection.Susan J Little, Tom Chen, Rui Wang, Christy Anderson, Sergei Kosakovsky Pond, Masato Nakazawa, William C Mathews, Victor DeGruttola, Davey M SmithClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2020-11-17
Intersection of Polycystic Ovary Syndrome and the Gut Microbiome.Maryan G Rizk, Varykina G ThackrayJournal Of The Endocrine Society2020-11-16
Chemically informed analyses of metabolomics mass spectrometry data with Qemistree.Anupriya Tripathi, Yoshiki Vázquez-Baeza, Julia M Gauglitz, Mingxun Wang, Kai Dührkop, Mélissa Nothias-Esposito, Deepa D Acharya, Madeleine Ernst, Justin J J van der Hooft, Qiyun Zhu, Daniel McDonald, Asker D Brejnrod, Antonio Gonzalez, Jo Handelsman, Markus Fleischauer, Marcus Ludwig, Sebastian Böcker, Louis-Félix Nothias, Rob Knight, Pieter C DorresteinNature Chemical Biology2020-11-16
Call for Original Research Papers for a Special Collection in : the Microbiome and Infection.Manuela Raffatellu, Andreas J BäumlerInfection And Immunity2020-11-16
The Balance of Stromal BMP Signaling Mediated by GREM1 and ISLR Drives Colorectal Carcinogenesis.Hiroki Kobayashi, Krystyna A Gieniec, Josephine A Wright, Tongtong Wang, Naoya Asai, Yasuyuki Mizutani, Tadashi Lida, Ryota Ando, Nobumi Suzuki, Tamsin R M Lannagan, Jia Q Ng, Akitoshi Hara, Yukihiro Shiraki, Shinji Mii, Mari Ichinose, Laura Vrbanac, Matthew J Lawrence, Tarik Sammour, Kay Uehara, Gareth Davies, Leszek Lisowski, Ian E Alexander, Yoku Hayakawa, Lisa M Butler, Andrew C W Zannettino, M Omar Din, Jeff Hasty, Alastair D Burt, Simon J Leedham, Anil K Rustgi, Siddhartha Mukherjee, Timothy C Wang, Atsushi Enomoto, Masahide Takahashi, Daniel L Worthley, Susan L WoodsGastroenterology2020-11-14
Sphingosine 1-Phosphate Receptor 2 Is Central to Maintaining Epidermal Barrier Homeostasis.Satomi Igawa, Ayaka Ohzono, Phoebe Pham, Zhenping Wang, Teruaki Nakatsuji, Tatsuya Dokoshi, Anna Di NardoThe Journal Of Investigative Dermatology2020-11-14
The flexibility of ACE2 in the context of SARS-CoV-2 infection.Emilia P Barros, Lorenzo Casalino, Zied Gaieb, Abigail C Dommer, Yuzhang Wang, Lucy Fallon, Lauren Raguette, Kellon Belfon, Carlos Simmerling, Rommie E AmaroBiophysical Journal2020-11-13
High-Quality Genome-Scale Models From Error-Prone, Long-Read Assemblies.Jared T Broddrick, Richard Szubin, Charles J Norsigian, Jonathan M Monk, Bernhard O Palsson, Mary N ParenteauFrontiers In Microbiology2020-11-12
Fungal-bacterial interaction selects for quorum sensing mutants with increased production of natural antifungal compounds.Andrea G Albarracín Orio, Daniel Petras, Romina A Tobares, Alexander A Aksenov, Mingxun Wang, Florencia Juncosa, Pamela Sayago, Alejandro J Moyano, Pieter C Dorrestein, Andrea M SmaniaCommunications Biology2020-11-12
Bare Versus Hair: Do Pubic Hair Grooming Preferences Dictate the Urogenital Microbiome?Julia Geynisman-Tan, Kimberly Kenton, Meera Tavathia, Alyson Yee, Jack A Gilbert, Sarah Collins, Christina Lewicky-Gaupp, Margaret MuellerFemale Pelvic Medicine & Reconstructive Surgery2020-11-11
Elucidation of Regulatory Modes for Five Two-Component Systems in Escherichia coli Reveals Novel Relationships.Kumari Sonal Choudhary, Julia A Kleinmanns, Katherine Decker, Anand V Sastry, Ye Gao, Richard Szubin, Yara Seif, Bernhard O PalssonMSystems2020-11-10
Comparative Circulation Dynamics of the Five Main HIV Types in China.Bram Vrancken, Bin Zhao, Xingguang Li, Xiaoxu Han, Haizhou Liu, Jin Zhao, Ping Zhong, Yi Lin, Junjie Zai, Mingchen Liu, Davey M Smith, Simon Dellicour, Antoine ChaillonJournal Of Virology2020-11-09
Review of Cardiac Involvement in Multisystem Inflammatory Syndrome in Children.Tarek Alsaied, Adriana H Tremoulet, Jane C Burns, Arwa Saidi, Audrey Dionne, Sean M Lang, Jane W Newburger, Sarah de Ferranti, Kevin G FriedmanCirculation2020-11-09
Semicontinuous system for the production of recombinant mCherry protein in Chlamydomonas reinhardtii.Cesar Andres Diaz Arias, Marcelo Chuei Matsudo, Livia Seno Ferreira-Camargo, João Vitor Dutra Molino, Stephen Patrick Mayfield, João Carlos Monteiro de CarvalhoBiotechnology Progress2020-11-09
Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data.Alexander A Aksenov, Ivan Laponogov, Zheng Zhang, Sophie L F Doran, Ilaria Belluomo, Dennis Veselkov, Wout Bittremieux, Louis Felix Nothias, Mélissa Nothias-Esposito, Katherine N Maloney, Biswapriya B Misra, Alexey V Melnik, Aleksandr Smirnov, Xiuxia Du, Kenneth L Jones, Kathleen Dorrestein, Morgan Panitchpakdi, Madeleine Ernst, Justin J J van der Hooft, Mabel Gonzalez, Chiara Carazzone, Adolfo Amézquita, Chris Callewaert, James T Morton, Robert A Quinn, Amina Bouslimani, Andrea Albarracín Orio, Daniel Petras, Andrea M Smania, Sneha P Couvillion, Meagan C Burnet, Carrie D Nicora, Erika Zink, Thomas O Metz, Viatcheslav Artaev, Elizabeth Humston-Fulmer, Rachel Gregor, Michael M Meijler, Itzhak Mizrahi, Stav Eyal, Brooke Anderson, Rachel Dutton, Raphaël Lugan, Pauline Le Boulch, Yann Guitton, Stephanie Prevost, Audrey Poirier, Gaud Dervilly, Bruno Le Bizec, Aaron Fait, Noga Sikron Persi, Chao Song, Kelem Gashu, Roxana Coras, Monica Guma, Julia Manasson, Jose U Scher, Dinesh Kumar Barupal, Saleh Alseekh, Alisdair R Fernie, Reza Mirnezami, Vasilis Vasiliou, Robin Schmid, Roman S Borisov, Larisa N Kulikova, Rob Knight, Mingxun Wang, George B Hanna, Pieter C Dorrestein, Kirill VeselkovNature Biotechnology2020-11-09
Response of Horticultural Soil Microbiota to Different Fertilization Practices.Iratxe Zarraonaindia, Xabier Simón Martínez-Goñi, Olaia Liñero, Marta Muñoz-Colmenero, Mikel Aguirre, David Abad, Igor Baroja-Careaga, Alberto de Diego, Jack A Gilbert, Andone EstonbaPlants (Basel, Switzerland)2020-11-06
Alterations in Gut Microbiota Do Not Play a Causal Role in Diet-independent Weight Gain Caused by Ovariectomy.Lillian Sau, Christine M Olmstead, Laura J Cui, Annie Chen, Reeya S Shah, Scott T Kelley, Varykina G ThackrayJournal Of The Endocrine Society2020-11-05
Verrucosamide, a Cytotoxic 1,4-Thiazepane-Containing Thiodepsipeptide from a Marine-Derived Actinomycete.Vimal Nair, Min Cheol Kim, James A Golen, Arnold L Rheingold, Gabriel A Castro, Paul R Jensen, William FenicalMarine Drugs2020-11-05
The gut mycobiome: a novel player in chronic liver diseases.Lu Jiang, Peter Stärkel, Jian-Gao Fan, Derrick Eugene Fouts, Petra Bacher, Bernd SchnablJournal Of Gastroenterology2020-11-05
Coronavirus, social distancing, and global geriatric mental health crisis: opportunities for promoting wisdom and resilience amid a pandemic.Dilip V JesteInternational Psychogeriatrics2020-11-05
A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis.Tae Gyu Oh, Susy M Kim, Cyrielle Caussy, Ting Fu, Jian Guo, Shirin Bassirian, Seema Singh, Egbert V Madamba, Ricki Bettencourt, Lisa Richards, Ruth T Yu, Annette R Atkins, Tao Huan, David A Brenner, Claude B Sirlin, Michael Downes, Ronald M Evans, Rohit LoombaCell Metabolism2020-11-04
Host variables confound gut microbiota studies of human disease.Ivan Vujkovic-Cvijin, Jack Sklar, Lingjing Jiang, Loki Natarajan, Rob Knight, Yasmine BelkaidNature2020-11-04
Efficient population modification gene-drive rescue system in the malaria mosquito Anopheles stephensi.Adriana Adolfi, Valentino M Gantz, Nijole Jasinskiene, Hsu-Feng Lee, Kristy Hwang, Gerard Terradas, Emily A Bulger, Arunachalam Ramaiah, Jared B Bennett, J J Emerson, John M Marshall, Ethan Bier, Anthony A JamesNature Communications2020-11-03
Discovery of novel secondary metabolites encoded in actinomycete genomes through coculture.Ji Hun Kim, Namil Lee, Soonkyu Hwang, Woori Kim, Yongjae Lee, Suhyung Cho, Bernhard O Palsson, Byung-Kwan ChoJournal Of Industrial Microbiology & Biotechnology2020-11-02
Bacterial-fungal interactions revealed by genome-wide analysis of bacterial mutant fitness.Emily C Pierce, Manon Morin, Jessica C Little, Roland B Liu, Joanna Tannous, Nancy P Keller, Kit Pogliano, Benjamin E Wolfe, Laura M Sanchez, Rachel J DuttonNature Microbiology2020-11-02
High Prevalence of HIV-1 Drug Resistance and Dynamics of Transmission Among High-Risk Populations in Port-au-Prince, Haiti.Frantz Jean Louis, Jean Wysler Domercant, Caroline Ignacio, Sara Gianella, Guethina Galbaud, Maureen Leonard, Davey M Smith, Antoine ChaillonJournal Of Acquired Immune Deficiency Syndromes (1999)2020-11-02
Multiscale Simulations Examining Glycan Shield Effects on Drug Binding to Influenza Neuraminidase.Christian Seitz, Lorenzo Casalino, Robert Konecny, Gary Huber, Rommie E Amaro, J Andrew McCammonBiophysical Journal2020-10-31
A cysteine protease inhibitor blocks SARS-CoV-2 infection of human and monkey cells.Drake M Mellott, Chien-Te Tseng, Aleksandra Drelich, Pavla Fajtová, Bala C Chenna, Demetrios H Kostomiris, Jason Hsu, Jiyun Zhu, Zane W Taylor, Vivian Tat, Ardala Katzfuss, Linfeng Li, Miriam A Giardini, Danielle Skinner, Ken Hirata, Sungjun Beck, Aaron F Carlin, Alex E Clark, Laura Beretta, Daniel Maneval, Felix Frueh, Brett L Hurst, Hong Wang, Klaudia I Kocurek, Frank M Raushel, Anthony J O'Donoghue, Jair Lage de Siqueira-Neto, Thomas D Meek, James H McKerrowBioRxiv : The Preprint Server For Biology2020-10-30
Expanding magnetic organelle biogenesis in the domain Bacteria.Wei Lin, Wensi Zhang, Greig A Paterson, Qiyun Zhu, Xiang Zhao, Rob Knight, Dennis A Bazylinski, Andrew P Roberts, Yongxin PanMicrobiome2020-10-30
Maintaining Patient Safety and Data Integrity of Nonalcoholic Steatohepatitis Clinical Trials During the Severe Acute Respiratory Syndrome-Coronavirus 2 Pandemic.Naim Alkhouri, Anita Kohli, Rohit Loomba, Stephen A HarrisonHepatology (Baltimore, Md.)2020-10-29
Trajectories of Depressive Symptoms, Neurocognitive Function, and Viral Suppression With Antiretroviral Therapy Among Youth With HIV Over 36 months.Jordan N Kohn, Matthew Shane Loop, Julie J Kim-Chang, Patricia A Garvie, John W Sleasman, Bernard Fischer, H Jonathon Rendina, Steven Paul Woods, Sharon L Nichols, Suzi HongJournal Of Acquired Immune Deficiency Syndromes (1999)2020-10-28
Exploration of Bacterial Bottlenecks and Streptococcus pneumoniae Pathogenesis by CRISPRi-Seq.Xue Liu, Jacqueline M Kimmey, Laura Matarazzo, Vincent de Bakker, Laurye Van Maele, Jean-Claude Sirard, Victor Nizet, Jan-Willem VeeningCell Host & Microbe2020-10-28
RAAS Inhibitors and Risk of Covid-19.Krishna Sriram, Rohit Loomba, Paul A InselThe New England Journal Of Medicine2020-10-27
Genetic elucidation of interconnected antibiotic pathways mediating maize innate immunity.Yezhang Ding, Philipp R Weckwerth, Elly Poretsky, Katherine M Murphy, James Sims, Evan Saldivar, Shawn A Christensen, Si Nian Char, Bing Yang, Anh-Dao Tong, Zhouxin Shen, Karl A Kremling, Edward S Buckler, Tom Kono, David R Nelson, Jörg Bohlmann, Matthew G Bakker, Martha M Vaughan, Ahmed S Khalil, Mariam Betsiashvili, Keini Dressano, Tobias G Köllner, Steven P Briggs, Philipp Zerbe, Eric A Schmelz, Alisa HuffakerNature Plants2020-10-26
Harmonising regulatory approval for antibiotics in children.Phoebe C M Williams, John Bradley, Emmanuel Roilides, Linus Olson, Sheldon Kaplan, Irja Lutsar, Carlo Giaquinto, Daniel K Benjamin, Mike SharlandThe Lancet. Child & Adolescent Health2020-10-24
Role of Carbon Monoxide in Host-Gut Microbiome Communication.Christopher P Hopper, Ladie Kimberly De La Cruz, Kristin V Lyles, Lauren K Wareham, Jack A Gilbert, Zehava Eichenbaum, Marcin Magierowski, Robert K Poole, Jakob Wollborn, Binghe WangChemical Reviews2020-10-22
CAICE Studies: Insights from a Decade of Ocean-Atmosphere Experiments in the Laboratory.Kathryn J Mayer, Jon S Sauer, Julie Dinasquet, Kimberly A PratherAccounts Of Chemical Research2020-10-22
Gut microbiome in Schizophrenia: Altered functional pathways related to immune modulation and atherosclerotic risk.Tanya T Nguyen, Tomasz Kosciolek, Rebecca E Daly, Yoshiki Vázquez-Baeza, Austin Swafford, Rob Knight, Dilip V JesteBrain, Behavior, And Immunity2020-10-22
Genetic Characterization of 89 Strains Isolated in Japan From 2011 to 2019.Yujiro Hirose, Masaya Yamaguchi, Norihiko Takemoto, Tohru Miyoshi-Akiyama, Tomoko Sumitomo, Masanobu Nakata, Tadayoshi Ikebe, Tomoki Hanada, Takahiro Yamaguchi, Ryuji Kawahara, Rumi Okuno, Hitoshi Otsuka, Yuko Matsumoto, Yuji Terashima, Yu Kazawa, Noriko Nakanishi, Kaoru Uchida, Yumi Akiyama, Kaori Iwabuchi, Chikara Nakagawa, Kazunari Yamamoto, Victor Nizet, Shigetada KawabataInfectious Microbes & Diseases2020-10-21
Systems biology analysis of the Clostridioides difficile core-genome contextualizes microenvironmental evolutionary pressures leading to genotypic and phenotypic divergence.Charles J Norsigian, Heather A Danhof, Colleen K Brand, Numan Oezguen, Firas S Midani, Bernhard O Palsson, Tor C Savidge, Robert A Britton, Jennifer K Spinler, Jonathan M MonkNPJ Systems Biology And Applications2020-10-20
Introducing the Mangrove Microbiome Initiative: Identifying Microbial Research Priorities and Approaches To Better Understand, Protect, and Rehabilitate Mangrove Ecosystems.Sarah M Allard, Matthew T Costa, Ashley N Bulseco, Véronique Helfer, Laetitia G E Wilkins, Christiane Hassenrück, Karsten Zengler, Martin Zimmer, Natalia Erazo, Jorge L Mazza Rodrigues, Norman Duke, Vânia M M Melo, Inka Vanwonterghem, Howard Junca, Huxley M Makonde, Diego Javier Jiménez, Tallita C L Tavares, Marco Fusi, Daniele Daffonchio, Carlos M Duarte, Raquel S Peixoto, Alexandre S Rosado, Jack A Gilbert, Jeff BowmanMSystems2020-10-20
Identifying the effect of vancomycin on health care-associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media.Akanksha Rajput, Saugat Poudel, Hannah Tsunemoto, Michael Meehan, Richard Szubin, Connor A Olson, Yara Seif, Anne Lamsa, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M Monk, Pieter C Dorrestein, Rob Knight, Joe Pogliano, Victor Nizet, Adam M Feist, Bernhard O PalssonGigaScience2020-10-20
Dynamics and Dispersal of Local HIV Epidemics Within San Diego and Across The San Diego-Tijuana Border.Bram Vrancken, Sanjay R Mehta, Santiago Ávila-Ríos, Claudia García-Morales, Daniela Tapia-Trejo, Gustavo Reyes-Terán, Samuel Navarro-Álvarez, Susan J Little, Martin Hoenigl, Heather A Pines, Thomas Patterson, Steffanie A Strathdee, Davey M Smith, Simon Dellicour, Antoine ChaillonClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2020-10-20
Evaluation of IL-17D in Host Immunity to Group A Infection.Allen Washington, Nissi Varki, J Andrés Valderrama, Victor Nizet, Jack D BuiJournal Of Immunology (Baltimore, Md. : 1950)2020-10-19
Expert Panel Review on Non-Alcoholic Fatty Liver Disease in Persons With HIV.Jordan E Lake, Turner Overton, Susanna Naggie, Mark Sulkowski, Rohit Loomba, David E Kleiner, Jennifer C Price, Kara W Chew, Raymond T Chung, Kathleen E CoreyClinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association2020-10-16
Content and Performance of the MiniMUGA Genotyping Array: A New Tool To Improve Rigor and Reproducibility in Mouse Research.John Sebastian Sigmon, Matthew W Blanchard, Ralph S Baric, Timothy A Bell, Jennifer Brennan, Gudrun A Brockmann, A Wesley Burks, J Mauro Calabrese, Kathleen M Caron, Richard E Cheney, Dominic Ciavatta, Frank Conlon, David B Darr, James Faber, Craig Franklin, Timothy R Gershon, Lisa Gralinski, Bin Gu, Christiann H Gaines, Robert S Hagan, Ernest G Heimsath, Mark T Heise, Pablo Hock, Folami Ideraabdullah, J Charles Jennette, Tal Kafri, Anwica Kashfeen, Mike Kulis, Vivek Kumar, Colton Linnertz, Alessandra Livraghi-Butrico, K C Kent Lloyd, Cathleen Lutz, Rachel M Lynch, Terry Magnuson, Glenn K Matsushima, Rachel McMullan, Darla R Miller, Karen L Mohlke, Sheryl S Moy, Caroline E Y Murphy, Maya Najarian, Lori O'Brien, Abraham A Palmer, Benjamin D Philpot, Scott H Randell, Laura Reinholdt, Yuyu Ren, Steve Rockwood, Allison R Rogala, Avani Saraswatula, Christopher M Sassetti, Jonathan C Schisler, Sarah A Schoenrock, Ginger D Shaw, John R Shorter, Clare M Smith, Celine L St Pierre, Lisa M Tarantino, David W Threadgill, William Valdar, Barbara J Vilen, Keegan Wardwell, Jason K Whitmire, Lucy Williams, Mark J Zylka, Martin T Ferris, Leonard McMillan, Fernando Pardo Manuel de VillenaGenetics2020-10-16
A high-stringency blueprint of the human proteome.Subash Adhikari, Edouard C Nice, Eric W Deutsch, Lydie Lane, Gilbert S Omenn, Stephen R Pennington, Young-Ki Paik, Christopher M Overall, Fernando J Corrales, Ileana M Cristea, Jennifer E Van Eyk, Mathias Uhlén, Cecilia Lindskog, Daniel W Chan, Amos Bairoch, James C Waddington, Joshua L Justice, Joshua LaBaer, Henry Rodriguez, Fuchu He, Markus Kostrzewa, Peipei Ping, Rebekah L Gundry, Peter Stewart, Sanjeeva Srivastava, Sudhir Srivastava, Fabio C S Nogueira, Gilberto B Domont, Yves Vandenbrouck, Maggie P Y Lam, Sara Wennersten, Juan Antonio Vizcaino, Marc Wilkins, Jochen M Schwenk, Emma Lundberg, Nuno Bandeira, Gyorgy Marko-Varga, Susan T Weintraub, Charles Pineau, Ulrike Kusebauch, Robert L Moritz, Seong Beom Ahn, Magnus Palmblad, Michael P Snyder, Ruedi Aebersold, Mark S BakerNature Communications2020-10-16
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.David E Gordon, Joseph Hiatt, Mehdi Bouhaddou, Veronica V Rezelj, Svenja Ulferts, Hannes Braberg, Alexander S Jureka, Kirsten Obernier, Jeffrey Z Guo, Jyoti Batra, Robyn M Kaake, Andrew R Weckstein, Tristan W Owens, Meghna Gupta, Sergei Pourmal, Erron W Titus, Merve Cakir, Margaret Soucheray, Michael McGregor, Zeynep Cakir, Gwendolyn Jang, Matthew J O'Meara, Tia A Tummino, Ziyang Zhang, Helene Foussard, Ajda Rojc, Yuan Zhou, Dmitry Kuchenov, Ruth Hüttenhain, Jiewei Xu, Manon Eckhardt, Danielle L Swaney, Jacqueline M Fabius, Manisha Ummadi, Beril Tutuncuoglu, Ujjwal Rathore, Maya Modak, Paige Haas, Kelsey M Haas, Zun Zar Chi Naing, Ernst H Pulido, Ying Shi, Inigo Barrio-Hernandez, Danish Memon, Eirini Petsalaki, Alistair Dunham, Miguel Correa Marrero, David Burke, Cassandra Koh, Thomas Vallet, Jesus A Silvas, Caleigh M Azumaya, Christian Billesbølle, Axel F Brilot, Melody G Campbell, Amy Diallo, Miles Sasha Dickinson, Devan Diwanji, Nadia Herrera, Nick Hoppe, Huong T Kratochvil, Yanxin Liu, Gregory E Merz, Michelle Moritz, Henry C Nguyen, Carlos Nowotny, Cristina Puchades, Alexandrea N Rizo, Ursula Schulze-Gahmen, Amber M Smith, Ming Sun, Iris D Young, Jianhua Zhao, Daniel Asarnow, Justin Biel, Alisa Bowen, Julian R Braxton, Jen Chen, Cynthia M Chio, Un Seng Chio, Ishan Deshpande, Loan Doan, Bryan Faust, Sebastian Flores, Mingliang Jin, Kate Kim, Victor L Lam, Fei Li, Junrui Li, Yen-Li Li, Yang Li, Xi Liu, Megan Lo, Kyle E Lopez, Arthur A Melo, Frank R Moss, Phuong Nguyen, Joana Paulino, Komal Ishwar Pawar, Jessica K Peters, Thomas H Pospiech, Maliheh Safari, Smriti Sangwan, Kaitlin Schaefer, Paul V Thomas, Aye C Thwin, Raphael Trenker, Eric Tse, Tsz Kin Martin Tsui, Feng Wang, Natalie Whitis, Zanlin Yu, Kaihua Zhang, Yang Zhang, Fengbo Zhou, Daniel Saltzberg, , Anthony J Hodder, Amber S Shun-Shion, Daniel M Williams, Kris M White, Romel Rosales, Thomas Kehrer, Lisa Miorin, Elena Moreno, Arvind H Patel, Suzannah Rihn, Mir M Khalid, Albert Vallejo-Gracia, Parinaz Fozouni, Camille R Simoneau, Theodore L Roth, David Wu, Mohd Anisul Karim, Maya Ghoussaini, Ian Dunham, Francesco Berardi, Sebastian Weigang, Maxime Chazal, Jisoo Park, James Logue, Marisa McGrath, Stuart Weston, Robert Haupt, C James Hastie, Matthew Elliott, Fiona Brown, Kerry A Burness, Elaine Reid, Mark Dorward, Clare Johnson, Stuart G Wilkinson, Anna Geyer, Daniel M Giesel, Carla Baillie, Samantha Raggett, Hannah Leech, Rachel Toth, Nicola Goodman, Kathleen C Keough, Abigail L Lind, , Reyna J Klesh, Kafi R Hemphill, Jared Carlson-Stevermer, Jennifer Oki, Kevin Holden, Travis Maures, Katherine S Pollard, Andrej Sali, David A Agard, Yifan Cheng, James S Fraser, Adam Frost, Natalia Jura, Tanja Kortemme, Aashish Manglik, Daniel R Southworth, Robert M Stroud, Dario R Alessi, Paul Davies, Matthew B Frieman, Trey Ideker, Carmen Abate, Nolwenn Jouvenet, Georg Kochs, Brian Shoichet, Melanie Ott, Massimo Palmarini, Kevan M Shokat, Adolfo García-Sastre, Jeremy A Rassen, Robert Grosse, Oren S Rosenberg, Kliment A Verba, Christopher F Basler, Marco Vignuzzi, Andrew A Peden, Pedro Beltrao, Nevan J KroganScience (New York, N.Y.)2020-10-15
Targeting the gut-liver-immune axis to treat cirrhosis.Thomas Henry Tranah, Lindsey A Edwards, Bernd Schnabl, Debbie Lindsay ShawcrossGut2020-10-15
Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2020 Recommendations of the International Antiviral Society-USA Panel.Michael S Saag, Rajesh T Gandhi, Jennifer F Hoy, Raphael J Landovitz, Melanie A Thompson, Paul E Sax, Davey M Smith, Constance A Benson, Susan P Buchbinder, Carlos Del Rio, Joseph J Eron, Gerd Fätkenheuer, Huldrych F Günthard, Jean-Michel Molina, Donna M Jacobsen, Paul A VolberdingJAMA2020-10-15
Functional and Structural Insights into a Vif/PPP2R5 Complex Elucidated Using Patient HIV-1 Isolates and Computational Modeling.Daniel J Salamango, Jennifer L McCann, Özlem Demir, Jordan T Becker, Jiayi Wang, Jairam R Lingappa, Nuri A Temiz, William L Brown, Rommie E Amaro, Reuben S HarrisJournal Of Virology2020-10-14
TLR4 signaling and macrophage inflammatory responses are dampened by GIV/Girdin.Lee Swanson, Gajanan D Katkar, Julian Tam, Rama F Pranadinata, Yogitha Chareddy, Jane Coates, Mahitha Shree Anandachar, Vanessa Castillo, Joshua Olson, Victor Nizet, Irina Kufareva, Soumita Das, Pradipta GhoshProceedings Of The National Academy Of Sciences Of The United States Of America2020-10-14
Metabolites from Microbes Isolated from the Skin of the Panamanian Rocket Frog (Anura: Dendrobatidae).Christian Martin H, Roberto Ibáñez, Louis-Félix Nothias, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein, Marcelino GutiérrezMetabolites2020-10-13
Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV.Bryn C Taylor, Kelly C Weldon, Ronald J Ellis, Donald Franklin, Daniel McDonald, Gregory Humphrey, MacKenzie Bryant, Julia Toronczak, Tara Schwartz, Jennifer Iudicello, Robert Heaton, Igor Grant, Sara Gianella, Scott Letendre, Austin Swafford, Pieter C Dorrestein, Rob KnightMSystems2020-10-13
Early-life gut dysbiosis linked to juvenile mortality in ostriches.Elin Videvall, Se Jin Song, Hanna M Bensch, Maria Strandh, Anel Engelbrecht, Naomi Serfontein, Olof Hellgren, Adriaan Olivier, Schalk Cloete, Rob Knight, Charlie K CornwallisMicrobiome2020-10-12
Intestinal Virome in Patients With Alcoholic Hepatitis.Lu Jiang, Sonja Lang, Yi Duan, Xinlian Zhang, Bei Gao, Jessica Chopyk, Leila K Schwanemann, Meritxell Ventura-Cots, Ramon Bataller, Francisco Bosques-Padilla, Elizabeth C Verna, Juan G Abraldes, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie L Shawcross, Samuel B Ho, Alexandre Louvet, Michael R Lucey, Philippe Mathurin, Guadalupe Garcia-Tsao, Tatiana Kisseleva, David A Brenner, Xin M Tu, Peter Stärkel, David Pride, Derrick E Fouts, Bernd SchnablHepatology (Baltimore, Md.)2020-10-10
Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity.Xin Fang, Yoshiki Vázquez-Baeza, Emmanuel Elijah, Fernando Vargas, Gail Ackermann, Gregory Humphrey, Rebecca Lau, Kelly C Weldon, Jon G Sanders, Morgan Panitchpakdi, Carolina Carpenter, Alan K Jarmusch, Jennifer Neill, Ara Miralles, Parambir Dulai, Siddharth Singh, Matthew Tsai, Austin D Swafford, Larry Smarr, David L Boyle, Bernhard O Palsson, John T Chang, Pieter C Dorrestein, William J Sandborn, Rob Knight, Brigid S BolandInflammatory Bowel Diseases2020-10-07
Cross-reactive memory T cells and herd immunity to SARS-CoV-2.Marc Lipsitch, Yonatan H Grad, Alessandro Sette, Shane CrottyNature Reviews. Immunology2020-10-06
Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of Antibiotic.Alison Vrbanac, Kathryn A Patras, Alan K Jarmusch, Robert H Mills, Samuel R Shing, Robert A Quinn, Fernando Vargas, David J Gonzalez, Pieter C Dorrestein, Rob Knight, Victor NizetMSystems2020-10-06
Distinctive gene and protein characteristics of extremely piezophilic Colwellia.Logan M Peoples, Than S Kyaw, Juan A Ugalde, Kelli K Mullane, Roger A Chastain, A Aristides Yayanos, Masataka Kusube, Barbara A Methé, Douglas H BartlettBMC Genomics2020-10-06
Prophage exotoxins enhance colonization fitness in epidemic scarlet fever-causing Streptococcus pyogenes.Stephan Brouwer, Timothy C Barnett, Diane Ly, Katherine J Kasper, David M P De Oliveira, Tania Rivera-Hernandez, Amanda J Cork, Liam McIntyre, Magnus G Jespersen, Johanna Richter, Benjamin L Schulz, Gordon Dougan, Victor Nizet, Kwok-Yung Yuen, Yuanhai You, John K McCormick, Martina L Sanderson-Smith, Mark R Davies, Mark J WalkerNature Communications2020-10-06
metaFlye: scalable long-read metagenome assembly using repeat graphs.Mikhail Kolmogorov, Derek M Bickhart, Bahar Behsaz, Alexey Gurevich, Mikhail Rayko, Sung Bong Shin, Kristen Kuhn, Jeffrey Yuan, Evgeny Polevikov, Timothy P L Smith, Pavel A PevznerNature Methods2020-10-05
Airborne transmission of SARS-CoV-2.Kimberly A Prather, Linsey C Marr, Robert T Schooley, Melissa A McDiarmid, Mary E Wilson, Donald K MiltonScience (New York, N.Y.)2020-10-05
Cholesterol 25-Hydroxylase inhibits SARS-CoV-2 and other coronaviruses by depleting membrane cholesterol.Shaobo Wang, Wanyu Li, Hui Hui, Shashi Kant Tiwari, Qiong Zhang, Ben A Croker, Stephen Rawlings, Davey Smith, Aaron F Carlin, Tariq M RanaThe EMBO Journal2020-10-05
Fecal Microbiota Transplantation Is Highly Effective in Real-World Practice: Initial Results From the FMT National Registry.Colleen R Kelly, Eugene F Yen, Ari M Grinspan, Stacy A Kahn, Ashish Atreja, James D Lewis, Thomas A Moore, David T Rubin, Alison M Kim, Sonya Serra, Yanina Nersesova, Lydia Fredell, Dea Hunsicker, Daniel McDonald, Rob Knight, Jessica R Allegretti, Joel Pekow, Imad Absah, Ronald Hsu, Jennifer Vincent, Sahil Khanna, Lyn Tangen, Carl V Crawford, Mark C Mattar, Lea Ann Chen, Monika Fischer, Razvan I Arsenescu, Paul Feuerstadt, Jonathan Goldstein, David Kerman, Adam C Ehrlich, Gary D Wu, Loren LaineGastroenterology2020-10-01
Transcriptomic Analysis Reveals Common Adaptation Mechanisms Under Different Stresses for Moderately Piezophilic Bacteria.Han Wang, Yu Zhang, Douglas H Bartlett, Xiang XiaoMicrobial Ecology2020-09-30
A Distinct Microbiome Signature in Posttreatment Lyme Disease Patients.Madeleine Morrissette, Norman Pitt, Antonio González, Philip Strandwitz, Mariaelena Caboni, Alison W Rebman, Rob Knight, Anthony D'Onofrio, John N Aucott, Mark J Soloski, Kim LewisMBio2020-09-29
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikJournal Of Virology2020-09-29
Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome.Bryn C Taylor, Kelly C Weldon, Ronald J Ellis, Donald Franklin, Tobin Groth, Emily C Gentry, Anupriya Tripathi, Daniel McDonald, Gregory Humphrey, MacKenzie Bryant, Julia Toronczak, Tara Schwartz, Michelli F Oliveira, Robert Heaton, Igor Grant, Sara Gianella, Scott Letendre, Austin Swafford, Pieter C Dorrestein, Rob KnightMSystems2020-09-29
Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans.Connie W Y Ha, Anthony Martin, Gregory D Sepich-Poore, Baochen Shi, Yizhou Wang, Kenneth Gouin, Gregory Humphrey, Karenina Sanders, Yasiru Ratnayake, Kelvin S L Chan, Gustaf Hendrick, J R Caldera, Christian Arias, Jacob E Moskowitz, Shannan J Ho Sui, Shaohong Yang, David Underhill, Matthew J Brady, Simon Knott, Kelly Kaihara, Michael J Steinbaugh, Huiying Li, Dermot P B McGovern, Rob Knight, Phillip Fleshner, Suzanne DevkotaCell2020-09-28
Androsamide, a Cyclic Tetrapeptide from a Marine sp., Suppresses Motility of Colorectal Cancer Cells.Jihye Lee, Chathurika D B Gamage, Geum Jin Kim, Prima F Hillman, Chaeyoung Lee, Eun Young Lee, Hyukjae Choi, Hangun Kim, Sang-Jip Nam, William FenicalJournal Of Natural Products2020-09-28
Optimal Threshold of Controlled Attenuation Parameter for Detection of HIV-Associated NAFLD With Magnetic Resonance Imaging as the Reference Standard.Veeral H Ajmera, Edward R Cachay, Christian B Ramers, Shirin Bassirian, Seema Singh, Richele Bettencourt, Lisa Richards, Gavin Hamilton, Michael Middleton, Katie Fowler, Claude Sirlin, Rohit LoombaClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2020-09-25
Yeast homologs of human MCUR1 regulate mitochondrial proline metabolism.Mohammad Zulkifli, John K Neff, Shrishiv A Timbalia, Natalie M Garza, Yingqi Chen, Jeramie D Watrous, Marta Murgia, Prachi P Trivedi, Steven K Anderson, Dhanendra Tomar, Roland Nilsson, Muniswamy Madesh, Mohit Jain, Vishal M GohilNature Communications2020-09-25
Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut microbiota.Anton Lavrinienko, Eugene Tukalenko, Timothy A Mousseau, Luke R Thompson, Rob Knight, Tapio Mappes, Phillip C WattsScientific Data2020-09-23
Nutrition and the Gut Microbiota in 10- to 18-Month-Old Children Living in Urban Slums of Mumbai, India.Samantha L Huey, Lingjing Jiang, Marcus W Fedarko, Daniel McDonald, Cameron Martino, Farhana Ali, David G Russell, Shobha A Udipi, Aparna Thorat, Varsha Thakker, Padmini Ghugre, R D Potdar, Harsha Chopra, Kripa Rajagopalan, Jere D Haas, Julia L Finkelstein, Rob Knight, Saurabh MehtaMSphere2020-09-23
Cross-reactive serum and memory B cell responses to spike protein in SARS-CoV-2 and endemic coronavirus infection.Ge Song, Wan-Ting He, Sean Callaghan, Fabio Anzanello, Deli Huang, James Ricketts, Jonathan L Torres, Nathan Beutler, Linghang Peng, Sirena Vargas, Jon Cassell, Mara Parren, Linlin Yang, Caroline Ignacio, Davey M Smith, James E Voss, David Nemazee, Andrew B Ward, Thomas Rogers, Dennis R Burton, Raiees AndrabiBioRxiv : The Preprint Server For Biology2020-09-23
The Bitome: digitized genomic features reveal fundamental genome organization.Cameron R Lamoureux, Kumari Sonal Choudhary, Zachary A King, Troy E Sandberg, Ye Gao, Anand V Sastry, Patrick V Phaneuf, Donghui Choe, Byung-Kwan Cho, Bernhard O PalssonNucleic Acids Research2020-09-23
The Pseudomonas aeruginosa protease LasB directly activates IL-1β.Josh Sun, Doris L LaRock, Elaine A Skowronski, Jacqueline M Kimmey, Joshua Olson, Zhenze Jiang, Anthony J O'Donoghue, Victor Nizet, Christopher N LaRockEBioMedicine2020-09-23
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikJournal Of Clinical Microbiology2020-09-22
CD8 T cells drive anorexia, dysbiosis, and blooms of a commensal with immunosuppressive potential after viral infection.Lara Labarta-Bajo, Anna Gramalla-Schmitz, Romana R Gerner, Katelynn R Kazane, Gregory Humphrey, Tara Schwartz, Karenina Sanders, Austin Swafford, Rob Knight, Manuela Raffatellu, Elina I ZúñigaProceedings Of The National Academy Of Sciences Of The United States Of America2020-09-21
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikAntimicrobial Agents And Chemotherapy2020-09-21
Reconstructing organisms in silico: genome-scale models and their emerging applications.Xin Fang, Colton J Lloyd, Bernhard O PalssonNature Reviews. Microbiology2020-09-21
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikInfection And Immunity2020-09-18
Antigen-Specific Adaptive Immunity to SARS-CoV-2 in Acute COVID-19 and Associations with Age and Disease Severity.Carolyn Rydyznski Moderbacher, Sydney I Ramirez, Jennifer M Dan, Alba Grifoni, Kathryn M Hastie, Daniela Weiskopf, Simon Belanger, Robert K Abbott, Christina Kim, Jinyong Choi, Yu Kato, Eleanor G Crotty, Cheryl Kim, Stephen A Rawlings, Jose Mateus, Long Ping Victor Tse, April Frazier, Ralph Baric, Bjoern Peters, Jason Greenbaum, Erica Ollmann Saphire, Davey M Smith, Alessandro Sette, Shane CrottyCell2020-09-16
Biomolecular Simulations in the Time of COVID19, and After.Rommie E Amaro, Adrian J MulhollandComputing In Science & Engineering2020-09-15
iModulonDB: a knowledgebase of microbial transcriptional regulation derived from machine learning.Kevin Rychel, Katherine Decker, Anand V Sastry, Patrick V Phaneuf, Saugat Poudel, Bernhard O PalssonNucleic Acids Research2020-09-15
HIV Care Prioritization Using Phylogenetic Branch Length.Niema Moshiri, Davey M Smith, Siavash MirarabJournal Of Acquired Immune Deficiency Syndromes (1999)2020-09-14
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets.Meena Choi, Jeremy Carver, Cristina Chiva, Manuel Tzouros, Ting Huang, Tsung-Heng Tsai, Benjamin Pullman, Oliver M Bernhardt, Ruth Hüttenhain, Guo Ci Teo, Yasset Perez-Riverol, Jan Muntel, Maik Müller, Sandra Goetze, Maria Pavlou, Erik Verschueren, Bernd Wollscheid, Alexey I Nesvizhskii, Lukas Reiter, Tom Dunkley, Eduard Sabidó, Nuno Bandeira, Olga VitekNature Methods2020-09-14
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikMolecular And Cellular Biology2020-09-14
Genetic examination of the marine bacterium Pseudoalteromonas luteoviolacea and effects of its metamorphosis-inducing factors.Amanda T Alker, Nathalie Delherbe, Trevor N Purdy, Bradley S Moore, Nicholas J ShikumaEnvironmental Microbiology2020-09-13
Shining Light on the COVID-19 Pandemic: A Vitamin D Receptor Checkpoint in Defense of Unregulated Wound Healing.Ronald M Evans, Scott M LippmanCell Metabolism2020-09-11
From intestinal dysbiosis to alcohol-associated liver disease.Beatriz Garcia Mendes, Bernd SchnablClinical And Molecular Hepatology2020-09-11
Complementary Genomic, Bioinformatics, and Chemical Approaches Facilitate the Absolute Structure Assignment of Ionostatin, a Linear Polyketide from a Rare Marine-Derived Actinomycete.Min Cheol Kim, Jaclyn M Winter, Reiko Cullum, Zhifei Li, William FenicalACS Chemical Biology2020-09-09
The microbiota in cirrhosis and its role in hepatic decompensation.Jonel Trebicka, Jane Macnaughtan, Bernd Schnabl, Debbie L Shawcross, Jasmohan S BajajJournal Of Hepatology2020-09-08
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikJournal Of Bacteriology2020-09-08
Restoration of fitness lost due to dysregulation of the pyruvate dehydrogenase complex is triggered by ribosomal binding site modifications.Amitesh Anand, Connor A Olson, Anand V Sastry, Arjun Patel, Richard Szubin, Laurence Yang, Adam M Feist, Bernhard O PalssonCell Reports2020-09-08
Recommendations for measuring HIV reservoir size in cure-directed clinical trials.Mohamed Abdel-Mohsen, Douglas Richman, Robert F Siliciano, Michel C Nussenzweig, Bonnie J Howell, Javier Martinez-Picado, Nicolas Chomont, Katharine J Bar, Xu G Yu, Mathias Lichterfeld, Jose Alcami, Daria Hazuda, Frederic Bushman, Janet D Siliciano, Michael R Betts, Adam M Spivak, Vicente Planelles, Beatrice H Hahn, Davey M Smith, Ya-Chi Ho, Maria J Buzon, Christian Gaebler, Mirko Paiardini, Qingsheng Li, Jacob D Estes, Thomas J Hope, Jay Kostman, Karam Mounzer, Marina Caskey, Lawrence Fox, Ian Frank, James L Riley, Pablo Tebas, Luis J Montaner, Nature Medicine2020-09-07
Lactose-reduced infant formula with added corn syrup solids is associated with a distinct gut microbiota in Hispanic infants.Roshonda B Jones, Paige K Berger, Jasmine F Plows, Tanya L Alderete, Joshua Millstein, Jennifer Fogel, Stanislav N Iablokov, Dmitry A Rodionov, Andrei L Osterman, Lars Bode, Michael I GoranGut Microbes2020-09-05
ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy.Chao Zhang, Celine Scornavacca, Erin K Molloy, Siavash MirarabMolecular Biology And Evolution2020-09-05
Both HIV and Tat expression decrease prepulse inhibition with further impairment by methamphetamine.T Jordan Walter, Jared W Young, Morgane Milienne-Petiot, D S Deben, Robert K Heaton, Scott Letendre, David J Grelotti, William Perry, Igor Grant, Arpi Minassian, Progress In Neuro-psychopharmacology & Biological Psychiatry2020-09-04
Lactobacillus commensals autochthonous to human milk have the hallmarks of potent probiotics.Jasia Anjum, Shahid Nazir, Muhammad Tariq, Kim Barrett, Arsalan ZaidiMicrobiology (Reading, England)2020-09-04
Cost-effectiveness analysis of pre-exposure prophylaxis for the prevention of HIV in men who have sex with men in South Korea: a mathematical modelling study.Heun Choi, Jiyeon Suh, Woonji Lee, Jun Hyoung Kim, Jung Ho Kim, Hye Seong, Jin Young Ahn, Su Jin Jeong, Nam Su Ku, Yoon Soo Park, Joon Sup Yeom, Changsoo Kim, Hee-Dae Kwon, Davey M Smith, Jeehyun Lee, Jun Yong ChoiScientific Reports2020-09-03
Genome Mining, Microbial Interactions, and Molecular Networking Reveals New Dibromoalterochromides from Strains of of Coiba National Park-Panama.Librada A Atencio, Cristopher A Boya P, Christian Martin H, Luis C Mejía, Pieter C Dorrestein, Marcelino GutiérrezMarine Drugs2020-09-03
Suppression of local type I interferon by gut microbiota-derived butyrate impairs antitumor effects of ionizing radiation.Kaiting Yang, Yuzhu Hou, Yuan Zhang, Hua Liang, Anukriti Sharma, Wenxin Zheng, Liangliang Wang, Rolando Torres, Ken Tatebe, Steven J Chmura, Sean P Pitroda, Jack A Gilbert, Yang-Xin Fu, Ralph R WeichselbaumThe Journal Of Experimental Medicine2020-09-03
Genome-Wide Dynamic Evaluation of the UV-Induced DNA Damage Response.Erica Silva, Manuel Michaca, Brenton Munson, Gordon J Bean, Philipp A Jaeger, Katherine Licon, Elizabeth A Winzeler, Trey IdekerG3 (Bethesda, Md.)2020-09-02
Chemical composition of material extractives influences microbial growth and dynamics on wetted wood materials.Dan Zhao, Cesar Cardona, Neil Gottel, Valerie J Winton, Paul M Thomas, Daniel A Raba, Scott T Kelley, Christopher Henry, Jack A Gilbert, Brent StephensScientific Reports2020-09-02
Loneliness Versus Wisdom Amid Two Concurrent Pandemics of Loneliness.Dilip V Jeste, Ellen E LeeThe American Journal Of Geriatric Psychiatry : Official Journal Of The American Association For Geriatric Psychiatry2020-09-02
Discovery and Verification of Extracellular miRNA Biomarkers for Non-invasive Prediction of Pre-eclampsia in Asymptomatic Women.Srimeenakshi Srinivasan, Ryan Treacy, Tiffany Herrero, Richelle Olsen, Trevor R Leonardo, Xuan Zhang, Peter DeHoff, Cuong To, Lara G Poling, Aileen Fernando, Sandra Leon-Garcia, Katharine Knepper, Vy Tran, Morgan Meads, Jennifer Tasarz, Aishwarya Vuppala, Soojin Park, Clara D Laurent, Tony Bui, Pike See Cheah, Rachael Tabitha Overcash, Gladys A Ramos, Hilary Roeder, Ionita Ghiran, Mana Parast, , Xandra O Breakefield, Amir J Lueth, Sharon R Rust, Max T Dufford, Angela C Fox, Durlin E Hickok, Julja Burchard, J Jay Boniface, Louise C LaurentCell Reports. Medicine2020-09-01
B cells expressing authentic naive human VRC01-class BCRs can be recruited to germinal centers and affinity mature in multiple independent mouse models.Deli Huang, Robert K Abbott, Colin Havenar-Daughton, Patrick D Skog, Rita Al-Kolla, Bettina Groschel, Tanya R Blane, Sergey Menis, Jenny Tuyet Tran, Theresa C Thinnes, Sabrina A Volpi, Alessia Liguori, Torben Schiffner, Sophia M Villegas, Oleksandr Kalyuzhniy, Mark Pintea, James E Voss, Nicole Phelps, Ryan Tingle, Alberto R Rodriguez, Greg Martin, Sergey Kupryianov, Allan deCamp, William R Schief, David Nemazee, Shane CrottyProceedings Of The National Academy Of Sciences Of The United States Of America2020-09-01
Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers.David Heckmann, Anaamika Campeau, Colton J Lloyd, Patrick V Phaneuf, Ying Hefner, Marvic Carrillo-Terrazas, Adam M Feist, David J Gonzalez, Bernhard O PalssonProceedings Of The National Academy Of Sciences Of The United States Of America2020-09-01
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikApplied And Environmental Microbiology2020-09-01
Iron at the host-microbe interface.Romana R Gerner, Sean-Paul Nuccio, Manuela RaffatelluMolecular Aspects Of Medicine2020-09-01
Context-aware dimensionality reduction deconvolutes gut microbial community dynamics.Cameron Martino, Liat Shenhav, Clarisse A Marotz, George Armstrong, Daniel McDonald, Yoshiki Vázquez-Baeza, James T Morton, Lingjing Jiang, Maria Gloria Dominguez-Bello, Austin D Swafford, Eran Halperin, Rob KnightNature Biotechnology2020-08-31
Exercise Training Reverses Gut Dysbiosis in Patients With Biopsy-Proven Nonalcoholic Steatohepatitis: A Proof of Concept Study.Alexa Hughes, Jessica Dahmus, Gloriany Rivas, Breianna Hummer, Jeremy R Chen See, Justin R Wright, Regina Lamendella, Kathryn H Schmitz, Christopher Sciamanna, Mack Ruffin, Andrew D Patterson, Rohit Loomba, Jonathan G StineClinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association2020-08-31
A case of mistaken identity: of the orbit.Allison J Chen, Lilangi S Ediriwickrema, Rohan Verma, Vera Vavinskaya, Solomon Shaftel, Adam S Deconde, Bobby S Korn, Don O Kikkawa, Catherine Y LiuOrbit (Amsterdam, Netherlands)2020-08-30
Quantitative profiling of built environment bacterial and fungal communities reveals dynamic material dependent growth patterns and microbial interactions.Ying Xu, Ruby Tandon, Chrislyn Ancheta, Pablo Arroyo, Jack A Gilbert, Brent Stephens, Scott T KelleyIndoor Air2020-08-28
Multifaceted Effects of Antigen Valency on B Cell Response Composition and Differentiation In Vivo.Yu Kato, Robert K Abbott, Brian L Freeman, Sonya Haupt, Bettina Groschel, Murillo Silva, Sergey Menis, Darrell J Irvine, William R Schief, Shane CrottyImmunity2020-08-27
Association of Body Mass Index with Fecal Microbial Diversity and Metabolites in the Northern Finland Birth Cohort.Erikka Loftfield, Karl-Heinz Herzig, J Gregory Caporaso, Andriy Derkach, Yunhu Wan, Doratha A Byrd, Emily Vogtmann, Minna Männikkö, Ville Karhunen, Rob Knight, Marc J Gunter, Marjo-Riitta Järvelin, Rashmi SinhaCancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology2020-08-27
HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers.Shuling Ren, Daria A Gaykalova, Theresa Guo, Alexander V Favorov, Elana J Fertig, Pablo Tamayo, Juan Luis Callejas-Valera, Mike Allevato, Mara Gilardi, Jessica Santos, Takahito Fukusumi, Akihiro Sakai, Mizuo Ando, Sayed Sadat, Chao Liu, Guorong Xu, Kathleen M Fisch, Zhiyong Wang, Alfredo A Molinolo, J Silvio Gutkind, Trey Ideker, Wayne M Koch, Joseph A CalifanoOncogene2020-08-26
Multidimensional Proteome Profiling of Blood-Brain Barrier Perturbation by Group B .Anaamika Campeau, Robert H Mills, Marie Blanchette, Kaja Bajc, Mario Malfavon, Roeben N Munji, Liwen Deng, Bryan Hancock, Kathryn A Patras, Joshua Olson, Victor Nizet, Richard Daneman, Kelly Doran, David J GonzalezMSystems2020-08-25
Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy.Andrew Oliver, Brandon LaMere, Claudia Weihe, Stephen Wandro, Karen L Lindsay, Pathik D Wadhwa, David A Mills, David T Pride, Oliver Fiehn, Trent Northen, Markus de Raad, Huiying Li, Jennifer B H Martiny, Susan Lynch, Katrine WhitesonMBio2020-08-25
The Southern Bluefin Tuna Mucosal Microbiome Is Influenced by Husbandry Method, Net Pen Location, and Anti-parasite Treatment.Jeremiah J Minich, Cecilia Power, Michaela Melanson, Rob Knight, Claire Webber, Kirsten Rough, Nathan J Bott, Barbara Nowak, Eric E AllenFrontiers In Microbiology2020-08-24
Fructose stimulated de novo lipogenesis is promoted by inflammation.Jelena Todoric, Giuseppe Di Caro, Saskia Reibe, Darren C Henstridge, Courtney R Green, Alison Vrbanac, Fatih Ceteci, Claire Conche, Reginald McNulty, Shabnam Shalapour, Koji Taniguchi, Peter J Meikle, Jeramie D Watrous, Rafael Moranchel, Mahan Najhawan, Mohit Jain, Xiao Liu, Tatiana Kisseleva, Maria T Diaz-Meco, Jorge Moscat, Rob Knight, Florian R Greten, Lester F Lau, Christian M Metallo, Mark A Febbraio, Michael KarinNature Metabolism2020-08-24
Feature-based molecular networking in the GNPS analysis environment.Louis-Félix Nothias, Daniel Petras, Robin Schmid, Kai Dührkop, Johannes Rainer, Abinesh Sarvepalli, Ivan Protsyuk, Madeleine Ernst, Hiroshi Tsugawa, Markus Fleischauer, Fabian Aicheler, Alexander A Aksenov, Oliver Alka, Pierre-Marie Allard, Aiko Barsch, Xavier Cachet, Andres Mauricio Caraballo-Rodriguez, Ricardo R Da Silva, Tam Dang, Neha Garg, Julia M Gauglitz, Alexey Gurevich, Giorgis Isaac, Alan K Jarmusch, Zdeněk Kameník, Kyo Bin Kang, Nikolas Kessler, Irina Koester, Ansgar Korf, Audrey Le Gouellec, Marcus Ludwig, Christian Martin H, Laura-Isobel McCall, Jonathan McSayles, Sven W Meyer, Hosein Mohimani, Mustafa Morsy, Oriane Moyne, Steffen Neumann, Heiko Neuweger, Ngoc Hung Nguyen, Melissa Nothias-Esposito, Julien Paolini, Vanessa V Phelan, Tomáš Pluskal, Robert A Quinn, Simon Rogers, Bindesh Shrestha, Anupriya Tripathi, Justin J J van der Hooft, Fernando Vargas, Kelly C Weldon, Michael Witting, Heejung Yang, Zheng Zhang, Florian Zubeil, Oliver Kohlbacher, Sebastian Böcker, Theodore Alexandrov, Nuno Bandeira, Mingxun Wang, Pieter C DorresteinNature Methods2020-08-24
Evaluation for SARS-CoV-2 in Breast Milk From 18 Infected Women.Christina Chambers, Paul Krogstad, Kerri Bertrand, Deisy Contreras, Nicole H Tobin, Lars Bode, Grace AldrovandiJAMA2020-08-22
Sustained attention and vigilance deficits associated with HIV and a history of methamphetamine dependence.Nina Pocuca, Jared W Young, David A MacQueen, Scott Letendre, Robert K Heaton, Mark A Geyer, William Perry, Igor Grant, Arpi Minassian, Drug And Alcohol Dependence2020-08-22
Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates.Joana Damas, Graham M Hughes, Kathleen C Keough, Corrie A Painter, Nicole S Persky, Marco Corbo, Michael Hiller, Klaus-Peter Koepfli, Andreas R Pfenning, Huabin Zhao, Diane P Genereux, Ross Swofford, Katherine S Pollard, Oliver A Ryder, Martin T Nweeia, Kerstin Lindblad-Toh, Emma C Teeling, Elinor K Karlsson, Harris A LewinProceedings Of The National Academy Of Sciences Of The United States Of America2020-08-21
Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment.Jeremiah Minich, Farhana Ali, Clarisse Marotz, Pedro Belda-Ferre, Leslie Chiang, Justin P Shaffer, Carolina S Carpenter, Daniel McDonald, Jack Gilbert, Sarah M Allard, Eric E Allen, Rob Knight, Daniel A Sweeney, Austin D SwaffordResearch Square2020-08-18
Microbe-Metabolite Associations Linked to the Rebounding Murine Gut Microbiome Postcolonization with Vancomycin-Resistant Enterococcus faecium.Andre Mu, Glen P Carter, Lucy Li, Nicole S Isles, Alison F Vrbanac, James T Morton, Alan K Jarmusch, David P De Souza, Vinod K Narayana, Komal Kanojia, Brunda Nijagal, Malcolm J McConville, Rob Knight, Benjamin P Howden, Timothy P StinearMSystems2020-08-18
N-glycolyl chondroitin synthesis using metabolically engineered E. coli.Adeola E Awofiranye, Sultan N Baytas, Ke Xia, Abinaya Badri, Wenqin He, Ajit Varki, Mattheos Koffas, Robert J LinhardtAMB Express2020-08-17
ReDU: a framework to find and reanalyze public mass spectrometry data.Alan K Jarmusch, Mingxun Wang, Christine M Aceves, Rohit S Advani, Shaden Aguirre, Alexander A Aksenov, Gajender Aleti, Allegra T Aron, Anelize Bauermeister, Sanjana Bolleddu, Amina Bouslimani, Andres Mauricio Caraballo Rodriguez, Rama Chaar, Roxana Coras, Emmanuel O Elijah, Madeleine Ernst, Julia M Gauglitz, Emily C Gentry, Makhai Husband, Scott A Jarmusch, Kenneth L Jones, Zdenek Kamenik, Audrey Le Gouellec, Aileen Lu, Laura-Isobel McCall, Kerry L McPhail, Michael J Meehan, Alexey V Melnik, Riya C Menezes, Yessica Alejandra Montoya Giraldo, Ngoc Hung Nguyen, Louis Felix Nothias, Mélissa Nothias-Esposito, Morgan Panitchpakdi, Daniel Petras, Robert A Quinn, Nicole Sikora, Justin J J van der Hooft, Fernando Vargas, Alison Vrbanac, Kelly C Weldon, Rob Knight, Nuno Bandeira, Pieter C DorresteinNature Methods2020-08-17
Ur-ine Old Age: Urinary Microbiome of Older Community Dwelling Women.Alan J Wolfe, Linda BrubakerCell Host & Microbe2020-08-14
Vaginal estrogen therapy is associated with increased Lactobacillus in the urine of postmenopausal women with overactive bladder symptoms.Krystal Thomas-White, Susanne Taege, Roberto Limeira, Cynthia Brincat, Cara Joyce, Evann E Hilt, Laura Mac-Daniel, Katherine A Radek, Linda Brubaker, Elizabeth R Mueller, Alan J WolfeAmerican Journal Of Obstetrics And Gynecology2020-08-11
Genome-Scale Metabolic Model of pv. : An Approach to Elucidate Pathogenicity at the Metabolic Level.David Botero, Jonathan Monk, María Juliana Rodríguez Cubillos, Andrés Rodríguez Cubillos, Mariana Restrepo, Vivian Bernal-Galeano, Alejandro Reyes, Andrés González Barrios, Bernhard Ø Palsson, Silvia Restrepo, Adriana BernalFrontiers In Genetics2020-08-11
System-level understanding of gene expression and regulation for engineering secondary metabolite production in Streptomyces.Yongjae Lee, Namil Lee, Soonkyu Hwang, Kangsan Kim, Woori Kim, Jihun Kim, Suhyung Cho, Bernhard O Palsson, Byung-Kwan ChoJournal Of Industrial Microbiology & Biotechnology2020-08-10
Synthetic cross-phyla gene replacement and evolutionary assimilation of major enzymes.Troy E Sandberg, Richard Szubin, Patrick V Phaneuf, Bernhard O PalssonNature Ecology & Evolution2020-08-10
No Evidence of SARS-CoV-2 Seminal Shedding Despite SARS-CoV-2 Persistence in the Upper Respiratory Tract.Stephen A Rawlings, Caroline Ignacio, Magali Porrachia, Pinyi Du, Davey M Smith, Antoine ChaillonOpen Forum Infectious Diseases2020-08-07
Active Microneedle Administration of Plant Virus Nanoparticles for Cancer Vaccination Improves Immunotherapeutic Efficacy.Christine E Boone, Chao Wang, Miguel Angel Lopez-Ramirez, Veronique Beiss, Sourabh Shukla, Paul L Chariou, Daniel Kupor, Ricardo Rueda, Joseph Wang, Nicole F SteinmetzACS Applied Nano Materials2020-08-07
Targeting HIV Env immunogens to B cell follicles in nonhuman primates through immune complex or protein nanoparticle formulations.Jacob T Martin, Christopher A Cottrell, Aleksandar Antanasijevic, Diane G Carnathan, Benjamin J Cossette, Chiamaka A Enemuo, Etse H Gebru, Yury Choe, Federico Viviano, Stephanie Fischinger, Talar Tokatlian, Kimberly M Cirelli, George Ueda, Jeffrey Copps, Torben Schiffner, Sergey Menis, Galit Alter, William R Schief, Shane Crotty, Neil P King, David Baker, Guido Silvestri, Andrew B Ward, Darrell J IrvineNPJ Vaccines2020-08-05
Targeting HIV Env immunogens to B cell follicles in nonhuman primates through immune complex or protein nanoparticle formulations.Jacob T Martin, Christopher A Cottrell, Aleksandar Antanasijevic, Diane G Carnathan, Benjamin J Cossette, Chiamaka A Enemuo, Etse H Gebru, Yury Choe, Federico Viviano, Stephanie Fischinger, Talar Tokatlian, Kimberly M Cirelli, George Ueda, Jeffrey Copps, Torben Schiffner, Sergey Menis, Galit Alter, William R Schief, Shane Crotty, Neil P King, David Baker, Guido Silvestri, Andrew B Ward, Darrell J IrvineNPJ Vaccines2020-08-05
Cutaneous innate immune tolerance is mediated by epigenetic control of MAP2K3 by HDAC8/9.Yu Sawada, Teruaki Nakatsuji, Tatsuya Dokoshi, Nikhil Nitin Kulkarni, Marc C Liggins, George Sen, Richard L GalloScience Immunology2020-08-05
Selective and cross-reactive SARS-CoV-2 T cell epitopes in unexposed humans.Jose Mateus, Alba Grifoni, Alison Tarke, John Sidney, Sydney I Ramirez, Jennifer M Dan, Zoe C Burger, Stephen A Rawlings, Davey M Smith, Elizabeth Phillips, Simon Mallal, Marshall Lammers, Paul Rubiro, Lorenzo Quiambao, Aaron Sutherland, Esther Dawen Yu, Ricardo da Silva Antunes, Jason Greenbaum, April Frazier, Alena J Markmann, Lakshmanane Premkumar, Aravinda de Silva, Bjoern Peters, Shane Crotty, Alessandro Sette, Daniela WeiskopfScience (New York, N.Y.)2020-08-04
Linking metabolic phenotypes to pathogenic traits among "Candidatus Liberibacter asiaticus" and its hosts.Cristal Zuñiga, Beth Peacock, Bo Liang, Greg McCollum, Sonia C Irigoyen, Diego Tec-Campos, Clarisse Marotz, Nien-Chen Weng, Alejandro Zepeda, Georgios Vidalakis, Kranthi K Mandadi, James Borneman, Karsten ZenglerNPJ Systems Biology And Applications2020-08-04
Deficiency of Intestinal α1-2-Fucosylation Exacerbates Ethanol-Induced Liver Disease in Mice.Rongrong Zhou, Cristina Llorente, Jinling Cao, Bei Gao, Yi Duan, Lu Jiang, Yanhan Wang, Vipin Kumar, Peter Stärkel, Lars Bode, Xuegong Fan, Bernd SchnablAlcoholism, Clinical And Experimental Research2020-08-02
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikMicrobiology Spectrum2020-08-02
Women Physicians and the COVID-19 Pandemic.Linda BrubakerJAMA2020-08-01
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikJournal Of Microbiology & Biology Education2020-07-31
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikMSystems2020-07-31
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikMSphere2020-07-31
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikMicrobiology And Molecular Biology Reviews : MMBR2020-07-31
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikMBio2020-07-31
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikMicrobiology Resource Announcements2020-07-31
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikClinical Microbiology Reviews2020-07-31
Association of HIV serostatus and metabolic syndrome with neurobehavioral disturbances.Caitlin N Pope, Jessica L Montoya, Elizabeth Vasquez, Josué Pérez-Santiago, Ronald Ellis, J Allen McCutchan, Dilip V Jeste, David J Moore, María J MarquineJournal Of Neurovirology2020-07-30
Synthetic microbial communities of heterotrophs and phototrophs facilitate sustainable growth.Cristal Zuñiga, Tingting Li, Michael T Guarnieri, Jackson P Jenkins, Chien-Ting Li, Kerem Bingol, Young-Mo Kim, Michael J Betenbaugh, Karsten ZenglerNature Communications2020-07-30
Microbiome and Metagenome Analyses of a Closed Habitat during Human Occupation.Ganesh Babu Malli Mohan, Ceth W Parker, Camilla Urbaniak, Nitin K Singh, Anthony Hood, Jeremiah J Minich, Rob Knight, Michelle Rucker, Kasthuri VenkateswaranMSystems2020-07-28
Marine microbial natural products: the evolution of a new field of science.William Bill FenicalThe Journal Of Antibiotics2020-07-27
Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity.Patrick V Phaneuf, James T Yurkovich, David Heckmann, Muyao Wu, Troy E Sandberg, Zachary A King, Justin Tan, Bernhard O Palsson, Adam M FeistBMC Genomics2020-07-25
MicroRNAs and Their Targetomes in Tumor-Immune Communication.Sunglim Cho, Jesse W Tai, Li-Fan LuCancers2020-07-24
Six novel species of the obligate marine actinobacterium , sp. nov., sp. nov., sp. nov., sp. nov., sp. nov. and sp. nov., and emended description of the genus .Brenda Román-Ponce, Natalie Millán-Aguiñaga, Dulce Guillen-Matus, Alexander B Chase, Joape G M Ginigini, Katy Soapi, Klaus D Feussner, Paul R Jensen, Martha E TrujilloInternational Journal Of Systematic And Evolutionary Microbiology2020-07-23
Facing the Change Together: Reflections of Coping and Resilience From American Geriatric Psychiatrists During COVID-19.Carmen Black Parker, Malcolm P Forbes, Ipsit V Vahia, Brent P Forester, Dilip V Jeste, Charles F ReynoldsThe American Journal Of Geriatric Psychiatry : Official Journal Of The American Association For Geriatric Psychiatry2020-07-23
Facing the change together: reflections of coping and resilience from American geriatric psychiatrists during COVID-19.Carmen Black Parker, Malcolm P Forbes, Ipsit V Vahia, Brent P Forester, Dilip V Jeste, Charles F ReynoldsInternational Psychogeriatrics2020-07-23
Biomarkers for the Discrimination of Acute Kawasaki Disease From Infections in Childhood.Judith Zandstra, Annemarie van de Geer, Michael W T Tanck, Diana van Stijn-Bringas Dimitriades, Cathelijn E M Aarts, Sanne M Dietz, Robin van Bruggen, Nina A Schweintzger, Werner Zenz, Marieke Emonts, Dace Zavadska, Marko Pokorn, Effua Usuf, Henriette A Moll, Luregn J Schlapbach, Enitan D Carrol, Stephane Paulus, Maria Tsolia, Colin Fink, Shunmay Yeung, Chisato Shimizu, Adriana Tremoulet, Rachel Galassini, Victoria J Wright, Federico Martinón-Torres, Jethro Herberg, Jane Burns, Michael Levin, Taco W Kuijpers, Frontiers In Pediatrics2020-07-22
Independent component analysis of E. coli's transcriptome reveals the cellular processes that respond to heterologous gene expression.Justin Tan, Anand V Sastry, Karoline S Fremming, Sara P Bjørn, Alexandra Hoffmeyer, Sangwoo Seo, Bjørn G Voldborg, Bernhard O PalssonMetabolic Engineering2020-07-22
Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals.Joonatan Palmu, Aaro Salosensaari, Aki S Havulinna, Susan Cheng, Michael Inouye, Mohit Jain, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Erkki Vartiainen, Tiina Laatikainen, Pekka Jousilahti, Veikko Salomaa, Rob Knight, Leo Lahti, Teemu J NiiranenJournal Of The American Heart Association2020-07-21
Virulence as a Side Effect of Interspecies Interaction in Coral Pathogens.Esther Rubio-Portillo, Ana B Martin-Cuadrado, Andrés M Caraballo-Rodríguez, Forest Rohwer, Pieter C Dorrestein, Josefa AntónMBio2020-07-21
T4 Pili Promote Colonization and Immune Evasion Phenotypes of Nonencapsulated M4 Streptococcus pyogenes.Yi-Hsuan Chen, Shao-Hui Li, Yao-Cheng Yang, Shu-Hao Hsu, Victor Nizet, Yung-Chi ChangMBio2020-07-21
Changes in the fecal bacterial microbiota associated with disease severity in alcoholic hepatitis patients.Sonja Lang, Bradley Fairfied, Bei Gao, Yi Duan, Xinlian Zhang, Derrick E Fouts, Bernd SchnablGut Microbes2020-07-20
Antibiotics and Innate Immunity: A Cooperative Effort Toward the Successful Treatment of Infections.Andrew Berti, Warren Rose, Victor Nizet, George SakoulasOpen Forum Infectious Diseases2020-07-20
In Reply: Navigating personal risk in rhinologic surgery during the COVID-19 pandemic.Adam S DeConde, Carol H Yan, Robert P DeCondeInternational Forum Of Allergy & Rhinology2020-07-19
Pathogen Interference: Targeting Virulence Factors to Tackle Intracellular Microbes.Michael H Lee, Sean-Paul Nuccio, Manuela RaffatelluCell Chemical Biology2020-07-18
Evolutionary stalling and a limit on the power of natural selection to improve a cellular module.Sandeep Venkataram, Ross Monasky, Shohreh H Sikaroodi, Sergey Kryazhimskiy, Betul KacarProceedings Of The National Academy Of Sciences Of The United States Of America2020-07-17
Transcriptomic Profiling Identifies Novel Hepatic and Intestinal Genes Following Chronic Plus Binge Ethanol Feeding in Mice.Lu Jiang, Huikuan Chu, Bei Gao, Sonja Lang, Yanhan Wang, Yi Duan, Bernd SchnablDigestive Diseases And Sciences2020-07-15
Redefining fundamental concepts of transcription initiation in bacteria.Citlalli Mejía-Almonte, Stephen J W Busby, Joseph T Wade, Jacques van Helden, Adam P Arkin, Gary D Stormo, Karen Eilbeck, Bernhard O Palsson, James E Galagan, Julio Collado-VidesNature Reviews. Genetics2020-07-14
Telomere-to-telomere assembly of a complete human X chromosome.Karen H Miga, Sergey Koren, Arang Rhie, Mitchell R Vollger, Ariel Gershman, Andrey Bzikadze, Shelise Brooks, Edmund Howe, David Porubsky, Glennis A Logsdon, Valerie A Schneider, Tamara Potapova, Jonathan Wood, William Chow, Joel Armstrong, Jeanne Fredrickson, Evgenia Pak, Kristof Tigyi, Milinn Kremitzki, Christopher Markovic, Valerie Maduro, Amalia Dutra, Gerard G Bouffard, Alexander M Chang, Nancy F Hansen, Amy B Wilfert, Françoise Thibaud-Nissen, Anthony D Schmitt, Jon-Matthew Belton, Siddarth Selvaraj, Megan Y Dennis, Daniela C Soto, Ruta Sahasrabudhe, Gulhan Kaya, Josh Quick, Nicholas J Loman, Nadine Holmes, Matthew Loose, Urvashi Surti, Rosa Ana Risques, Tina A Graves Lindsay, Robert Fulton, Ira Hall, Benedict Paten, Kerstin Howe, Winston Timp, Alice Young, James C Mullikin, Pavel A Pevzner, Jennifer L Gerton, Beth A Sullivan, Evan E Eichler, Adam M PhillippyNature2020-07-14
Shaping an Endospore: Architectural Transformations During Sporulation.Kanika Khanna, Javier Lopez-Garrido, Kit PoglianoAnnual Review Of Microbiology2020-07-13
Breastmilk Feeding Practices Are Associated with the Co-Occurrence of Bacteria in Mothers' Milk and the Infant Gut: the CHILD Cohort Study.Kelsey Fehr, Shirin Moossavi, Hind Sbihi, Rozlyn C T Boutin, Lars Bode, Bianca Robertson, Chloe Yonemitsu, Catherine J Field, Allan B Becker, Piushkumar J Mandhane, Malcolm R Sears, Ehsan Khafipour, Theo J Moraes, Padmaja Subbarao, B Brett Finlay, Stuart E Turvey, Meghan B AzadCell Host & Microbe2020-07-10
Metagenome Data on Intestinal Phage-Bacteria Associations Aids the Development of Phage Therapy against Pathobionts.Kosuke Fujimoto, Yasumasa Kimura, Masaki Shimohigoshi, Takeshi Satoh, Shintaro Sato, Georg Tremmel, Miho Uematsu, Yunosuke Kawaguchi, Yuki Usui, Yoshiko Nakano, Tetsuya Hayashi, Koji Kashima, Yoshikazu Yuki, Kiyoshi Yamaguchi, Yoichi Furukawa, Masanori Kakuta, Yutaka Akiyama, Rui Yamaguchi, Sheila E Crowe, Peter B Ernst, Satoru Miyano, Hiroshi Kiyono, Seiya Imoto, Satoshi UematsuCell Host & Microbe2020-07-10
Pre-existing immunity to SARS-CoV-2: the knowns and unknowns.Alessandro Sette, Shane CrottyNature Reviews. Immunology2020-07-09
Intestinal Virome Signature Associated With Severity of Nonalcoholic Fatty Liver Disease.Sonja Lang, Münevver Demir, Anna Martin, Lu Jiang, Xinlian Zhang, Yi Duan, Bei Gao, Hilmar Wisplinghoff, Philipp Kasper, Christoph Roderburg, Frank Tacke, Hans-Michael Steffen, Tobias Goeser, Juan G Abraldes, Xin M Tu, Rohit Loomba, Peter Stärkel, David Pride, Derrick E Fouts, Bernd SchnablGastroenterology2020-07-09
Impact of insertion sequences on convergent evolution of Shigella species.Jane Hawkey, Jonathan M Monk, Helen Billman-Jacobe, Bernhard Palsson, Kathryn E HoltPLoS Genetics2020-07-09
Daptomycin for Pediatric Gram-Positive Acute Hematogenous Osteomyelitis.John S Bradley, Antonio C Arrieta, Valeri A Digtyar, Myra W Popejoy, Anjana Grandhi, Paula Bokesch, Ellie Hershberger, Mary Beth Dorr, Christopher M Tan, Yoshihiko Murata, Dominik J Wolf, Mekki BensaciThe Pediatric Infectious Disease Journal2020-07-09
Microbial Products and Metabolites Contributing to Alcohol-Related Liver Disease.Bei Gao, Atoosa Emami, Shilpa Nath, Bernd SchnablMolecular Nutrition & Food Research2020-07-07
Site-Directed Mutagenesis of Large Biosynthetic Gene Clusters Oligonucleotide Recombineering and CRISPR/Cas9 Targeting.Jia Jia Zhang, Bradley S MooreACS Synthetic Biology2020-07-06
Distance, diffusion and the role of social media in a time of COVID contagion.Sara Moukarzel, Miguel Del Fresno, Lars Bode, Alan J DalyMaternal & Child Nutrition2020-07-06
Repurposed drugs block toxin-driven platelet clearance by the hepatic Ashwell-Morell receptor to clear bacteremia.Josh Sun, Satoshi Uchiyama, Joshua Olson, Yosuke Morodomi, Ingrid Cornax, Nao Ando, Yohei Kohno, May M T Kyaw, Bernice Aguilar, Nina M Haste, Sachiko Kanaji, Taisuke Kanaji, Warren E Rose, George Sakoulas, Jamey D Marth, Victor NizetScience Translational Medicine2020-07-05
Staphylococcus epidermidis protease EcpA can be a deleterious component of the skin microbiome in atopic dermatitis.Laura Cau, Michael R Williams, Anna M Butcher, Teruaki Nakatsuji, Jeffrey S Kavanaugh, Joyce Y Cheng, Faiza Shafiq, Kyle Higbee, Tissa R Hata, Alexander R Horswill, Richard L GalloThe Journal Of Allergy And Clinical Immunology2020-07-04
Detection of Neisseria gonorrhoeae from Joint Aspirate by Metagenomic Sequencing in Disseminated Gonococcal Infection.Betial Asmerom, Ian Drobish, Britanny Winckler, Leslie Chiang, Lauge Farnaes, Julia Beauchamp-Walters, John S Bradley, Nanda RamchandarJournal Of The Pediatric Infectious Diseases Society2020-07-03
Revealing 29 sets of independently modulated genes in , their regulators, and role in key physiological response.Saugat Poudel, Hannah Tsunemoto, Yara Seif, Anand V Sastry, Richard Szubin, Sibei Xu, Henrique Machado, Connor A Olson, Amitesh Anand, Joe Pogliano, Victor Nizet, Bernhard O PalssonProceedings Of The National Academy Of Sciences Of The United States Of America2020-07-02
A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis.Tae Gyu Oh, Susy M Kim, Cyrielle Caussy, Ting Fu, Jian Guo, Shirin Bassirian, Seema Singh, Egbert V Madamba, Ricki Bettencourt, Lisa Richards, Ruth T Yu, Annette R Atkins, Tao Huan, David A Brenner, Claude B Sirlin, Michael Downes, Ronald M Evans, Rohit LoombaCell Metabolism2020-06-30
Reply.Ashraf S Harahsheh, Nagib Dahdah, Jane W Newburger, Michael A Portman, Robert Tulloh, Brian W McCrindle, Rolando Cimaz, Jane C BurnsThe Journal Of Pediatrics2020-06-30
Inflammation in Mental Disorders: Is the Microbiota the Missing Link?Sophie Ouabbou, Ying He, Keith Butler, Ming TsuangNeuroscience Bulletin2020-06-27
Translating gene drive science to promote linguistic diversity in community and stakeholder engagement.Cynthia Cheung, Stephanie Gamez, Rebeca Carballar-Lejarazú, Victor Ferman, Váleri N Vásquez, Gerard Terradas, Judy Ishikawa, Cynthia E Schairer, Ethan Bier, John M Marshall, Anthony A James, Omar S Akbari, Cinnamon S BlossGlobal Public Health2020-06-26
Synoviocyte-targeted therapy synergizes with TNF inhibition in arthritis reversal.Mattias N D Svensson, Martina Zoccheddu, Shen Yang, Gyrid Nygaard, Christian Secchi, Karen M Doody, Kamil Slowikowski, Fumitaka Mizoguchi, Frances Humby, Rebecca Hands, Eugenio Santelli, Cristiano Sacchetti, Kuninobu Wakabayashi, Dennis J Wu, Christopher Barback, Rizi Ai, Wei Wang, Gary P Sims, Piotr Mydel, Tsuyoshi Kasama, David L Boyle, Francesco Galimi, David Vera, Michel L Tremblay, Soumya Raychaudhuri, Michael B Brenner, Gary S Firestein, Costantino Pitzalis, Anna-Karin H Ekwall, Stephanie M Stanford, Nunzio BottiniScience Advances2020-06-26
Intestinal permeability, microbial translocation, changes in duodenal and fecal microbiota, and their associations with alcoholic liver disease progression in humans.Luca Maccioni, Bei Gao, Sophie Leclercq, Boris Pirlot, Yves Horsmans, Philippe De Timary, Isabelle Leclercq, Derrick Fouts, Bernd Schnabl, Peter StärkelGut Microbes2020-06-26
Sierra Nevada mountain lake microbial communities are structured by temperature, resources and geographic location.Marika A Schulhof, Andrew E Allen, Eric E Allen, Natalie Mladenov, John P McCrow, Natalie T Jones, Jessica Blanton, Hamanda B Cavalheri, Drishti Kaul, Celia C Symons, Jonathan B ShurinMolecular Ecology2020-06-24
In-Hospital Use of Statins Is Associated with a Reduced Risk of Mortality among Individuals with COVID-19.Xiao-Jing Zhang, Juan-Juan Qin, Xu Cheng, Lijun Shen, Yan-Ci Zhao, Yufeng Yuan, Fang Lei, Ming-Ming Chen, Huilin Yang, Liangjie Bai, Xiaohui Song, Lijin Lin, Meng Xia, Feng Zhou, Jianghua Zhou, Zhi-Gang She, Lihua Zhu, Xinliang Ma, Qingbo Xu, Ping Ye, Guohua Chen, Liming Liu, Weiming Mao, Youqin Yan, Bing Xiao, Zhigang Lu, Gang Peng, Mingyu Liu, Jun Yang, Luyu Yang, Changjiang Zhang, Haofeng Lu, Xigang Xia, Daihong Wang, Xiaofeng Liao, Xiang Wei, Bing-Hong Zhang, Xin Zhang, Juan Yang, Guang-Nian Zhao, Peng Zhang, Peter P Liu, Rohit Loomba, Yan-Xiao Ji, Jiahong Xia, Yibin Wang, Jingjing Cai, Jiao Guo, Hongliang LiCell Metabolism2020-06-24
A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes.Sheila Podell, Jessica M Blanton, Aaron Oliver, Michelle A Schorn, Vinayak Agarwal, Jason S Biggs, Bradley S Moore, Eric E AllenMicrobiome2020-06-23
High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy.Ruma Raghuvanshi, Karla Vasco, Yoshiki Vázquez-Baeza, Lingjing Jiang, James T Morton, Danxun Li, Antonio Gonzalez, Lindsay DeRight Goldasich, Gregory Humphrey, Gail Ackermann, Austin D Swafford, Douglas Conrad, Rob Knight, Pieter C Dorrestein, Robert A QuinnMSystems2020-06-23
Bcl-6 is the nexus transcription factor of T follicular helper cells via repressor-of-repressor circuits.Jinyong Choi, Huitian Diao, Caterina E Faliti, Jacquelyn Truong, Meghan Rossi, Simon Bélanger, Bingfei Yu, Ananda W Goldrath, Matthew E Pipkin, Shane CrottyNature Immunology2020-06-22
Rationale and design of the Kidney Precision Medicine Project.Ian H de Boer, Charles E Alpers, Evren U Azeloglu, Ulysses G J Balis, Jonathan M Barasch, Laura Barisoni, Kristina N Blank, Andrew S Bomback, Keith Brown, Pierre C Dagher, Ashveena L Dighe, Michael T Eadon, Tarek M El-Achkar, Joseph P Gaut, Nir Hacohen, Yongqun He, Jeffrey B Hodgin, Sanjay Jain, John A Kellum, Krzysztof Kiryluk, Richard Knight, Zoltan G Laszik, Chrysta Lienczewski, Laura H Mariani, Robyn L McClelland, Steven Menez, Dennis G Moledina, Sean D Mooney, John F O'Toole, Paul M Palevsky, Chirag R Parikh, Emilio D Poggio, Sylvia E Rosas, Matthew R Rosengart, Minnie M Sarwal, Jennifer A Schaub, John R Sedor, Kumar Sharma, Becky Steck, Robert D Toto, Olga G Troyanskaya, Katherine R Tuttle, Miguel A Vazquez, Sushrut S Waikar, Kayleen Williams, Francis Perry Wilson, Kun Zhang, Ravi Iyengar, Matthias Kretzler, Jonathan Himmelfarb, Kidney International2020-06-22
Fermentable fiber-induced hepatocellular carcinoma in mice recapitulates gene signatures found in human liver cancer.Darshan Shimoga Chandrashekar, Rachel M Golonka, Beng San Yeoh, David J Gonzalez, Mathias Heikenwälder, Andrew T Gerwirtz, Sooryanarayana Varambally, Matam Vijay-KumarPloS One2020-06-19
Functional Microbiomics Reveals Alterations of the Gut Microbiome and Host Co-Metabolism in Patients With Alcoholic Hepatitis.Bei Gao, Yi Duan, Sonja Lang, Dinesh Barupal, Tsung-Chin Wu, Luis Valdiviez, Bryan Roberts, Ying Yng Choy, Tong Shen, Gregory Byram, Ying Zhang, Sili Fan, Benjamin Wancewicz, Yan Shao, Kevin Vervier, Yanhan Wang, Rongrong Zhou, Lu Jiang, Shilpa Nath, Rohit Loomba, Juan G Abraldes, Ramon Bataller, Xin M Tu, Peter Stärkel, Trevor D Lawley, Oliver Fiehn, Bernd SchnablHepatology Communications2020-06-19
Modulating the quantity of HIV Env-specific CD4 T cell help promotes rare B cell responses in germinal centers.Jeong Hyun Lee, Joyce K Hu, Erik Georgeson, Catherine Nakao, Bettina Groschel, Thamotharampillai Dileepan, Marc K Jenkins, Gregory Seumois, Pandurangan Vijayanand, William R Schief, Shane CrottyThe Journal Of Experimental Medicine2020-06-17
Streptococcus pyogenes upregulates arginine catabolism to exert its pathogenesis on the skin surface.Yujiro Hirose, Masaya Yamaguchi, Tomoko Sumitomo, Masanobu Nakata, Tomoki Hanada, Daisuke Okuzaki, Daisuke Motooka, Yasushi Mori, Hiroshi Kawasaki, Alison Coady, Satoshi Uchiyama, Masanobu Hiraoka, Raymond H Zurich, Masayuki Amagai, Victor Nizet, Shigetada KawabataCell Reports2020-06-17
Harnessing Activin A Adjuvanticity to Promote Antibody Responses to BG505 HIV Envelope Trimers.Diane G Carnathan, Kirti Kaushik, Ali H Ellebedy, Chiamaka A Enemuo, Etse H Gebru, Pallavi Dhadvai, Mohammed Ata Ur Rasheed, Matthias G Pauthner, Gabriel Ozorowski, Rafi Ahmed, Dennis R Burton, Andrew B Ward, Guido Silvestri, Shane Crotty, Michela LocciFrontiers In Immunology2020-06-16
Evaluation of SARS-CoV-2 in Breastmilk from 18 Infected Women.Christina D Chambers, Paul Krogstad, Kerri Bertrand, Deisy Contreras, Nicole H Tobin, Lars Bode, Grace M AldrovandiMedRxiv : The Preprint Server For Health Sciences2020-06-16
Isolation of potent SARS-CoV-2 neutralizing antibodies and protection from disease in a small animal model.Thomas F Rogers, Fangzhu Zhao, Deli Huang, Nathan Beutler, Alison Burns, Wan-Ting He, Oliver Limbo, Chloe Smith, Ge Song, Jordan Woehl, Linlin Yang, Robert K Abbott, Sean Callaghan, Elijah Garcia, Jonathan Hurtado, Mara Parren, Linghang Peng, Sydney Ramirez, James Ricketts, Michael J Ricciardi, Stephen A Rawlings, Nicholas C Wu, Meng Yuan, Davey M Smith, David Nemazee, John R Teijaro, James E Voss, Ian A Wilson, Raiees Andrabi, Bryan Briney, Elise Landais, Devin Sok, Joseph G Jardine, Dennis R BurtonScience (New York, N.Y.)2020-06-15
Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information.Zhoutao Chen, Long Pham, Tsai-Chin Wu, Guoya Mo, Yu Xia, Peter L Chang, Devin Porter, Tan Phan, Huu Che, Hao Tran, Vikas Bansal, Justin Shaffer, Pedro Belda-Ferre, Greg Humphrey, Rob Knight, Pavel Pevzner, Son Pham, Yong Wang, Ming LeiGenome Research2020-06-15
CBASS Immunity Uses CARF-Related Effectors to Sense 3'-5'- and 2'-5'-Linked Cyclic Oligonucleotide Signals and Protect Bacteria from Phage Infection.Brianna Lowey, Aaron T Whiteley, Alexander F A Keszei, Benjamin R Morehouse, Ian T Mathews, Sadie P Antine, Victor J Cabrera, Dmitry Kashin, Percy Niemann, Mohit Jain, Frank Schwede, John J Mekalanos, Sichen Shao, Amy S Y Lee, Philip J KranzuschCell2020-06-15
The selective PPAR-delta agonist seladelpar reduces ethanol-induced liver disease by restoring gut barrier function and bile acid homeostasis in mice.Huikuan Chu, Lu Jiang, Bei Gao, Nagsen Gautam, Jawaher A Alamoudi, Sonja Lang, Yanhan Wang, Yi Duan, Yazen Alnouti, Edward E Cable, Bernd SchnablTranslational Research : The Journal Of Laboratory And Clinical Medicine2020-06-15
Shielding and Beyond: The Roles of Glycans in SARS-CoV-2 Spike Protein.Lorenzo Casalino, Zied Gaieb, Jory A Goldsmith, Christy K Hjorth, Abigail C Dommer, Aoife M Harbison, Carl A Fogarty, Emilia P Barros, Bryn C Taylor, Jason S McLellan, Elisa Fadda, Rommie E AmaroBioRxiv : The Preprint Server For Biology2020-06-11
Efficacy of Antigonococcal CMP-Nonulosonate Therapeutics Require Cathelicidins.Sunita Gulati, Ian C Schoenhofen, Theresa Lindhout-Djukic, Lisa A Lewis, Iesha Y Moustafa, Sudeshna Saha, Bo Zheng, Nancy Nowak, Peter A Rice, Ajit Varki, Sanjay RamThe Journal Of Infectious Diseases2020-06-10
Clinical Characteristics of 58 Children With a Pediatric Inflammatory Multisystem Syndrome Temporally Associated With SARS-CoV-2.Elizabeth Whittaker, Alasdair Bamford, Julia Kenny, Myrsini Kaforou, Christine E Jones, Priyen Shah, Padmanabhan Ramnarayan, Alain Fraisse, Owen Miller, Patrick Davies, Filip Kucera, Joe Brierley, Marilyn McDougall, Michael Carter, Adriana Tremoulet, Chisato Shimizu, Jethro Herberg, Jane C Burns, Hermione Lyall, Michael Levin, JAMA2020-06-09
Persistent Smell Loss Following Undetectable SARS-CoV-2.Carol H Yan, Divya P Prajapati, Michele L Ritter, Adam S DeCondeOtolaryngology--head And Neck Surgery : Official Journal Of American Academy Of Otolaryngology-Head And Neck Surgery2020-06-09
Bacterial communities associated with cell phones and shoes.David A Coil, Russell Y Neches, Jenna M Lang, Guillaume Jospin, Wendy E Brown, Darlene Cavalier, Jarrad Hampton-Marcell, Jack A Gilbert, Jonathan A EisenPeerJ2020-06-09
Spatial Compartmentalization of the Microbiome between the Lumen and Crypts Is Lost in the Murine Cecum following the Process of Surgery, Including Overnight Fasting and Exposure to Antibiotics.Alexander Zaborin, Beatriz Penalver Bernabe, Robert Keskey, Naseer Sangwan, Sanjiv Hyoju, Neil Gottel, Jack A Gilbert, Olga Zaborina, John C AlverdyMSystems2020-06-09
Reply to: Self-reported olfactory loss in COVID-19: is it really a favorable prognostic factor?Carol H Yan, Farhoud Faraji, Adam S DeCondeInternational Forum Of Allergy & Rhinology2020-06-08
Temporal variations in bacterial community diversity and composition throughout intensive care unit renovations.Jessica Chopyk, Kevan Akrami, Tovia Bavly, Ji H Shin, Leila K Schwanemann, Melissa Ly, Richa Kalia, Ying Xu, Scott T Kelley, Atul Malhotra, Francesca J Torriani, Daniel A Sweeney, David T PrideMicrobiome2020-06-08
Tuning the Innate Immune Response to Cyclic Dinucleotides by Using Atomic Mutagenesis.Yao Li, Andrea Fin, Alexander R Rovira, Yichi Su, Andrew B Dippel, Jonathan Andrés Valderrama, Angelica M Riestra, Victor Nizet, Ming C Hammond, Yitzhak TorChembiochem : A European Journal Of Chemical Biology2020-06-08
Self-reported olfactory loss associates with outpatient clinical course in COVID-19.Carol H Yan, Farhoud Faraji, Divya P Prajapati, Benjamin T Ostrander, Adam S DeCondeInternational Forum Of Allergy & Rhinology2020-06-07
Microbial Synthesis of Human-Hormone Melatonin at Gram Scales.Hao Luo, Konstantin Schneider, Ulla Christensen, Yang Lei, Markus Herrgard, Bernhard Ø PalssonACS Synthetic Biology2020-06-05
Human milk fungi: environmental determinants and inter-kingdom associations with milk bacteria in the CHILD Cohort Study.Shirin Moossavi, Kelsey Fehr, Hooman Derakhshani, Hind Sbihi, Bianca Robertson, Lars Bode, Jeffrey Brook, Stuart E Turvey, Theo J Moraes, Allan B Becker, Piushkumar J Mandhane, Malcolm R Sears, Ehsan Khafipour, Padmaja Subbarao, Meghan B AzadBMC Microbiology2020-06-05
Comparative Genomics Determines Strain-Dependent Secondary Metabolite Production in Strains.Woori Kim, Namil Lee, Soonkyu Hwang, Yongjae Lee, Jihun Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan ChoBiomolecules2020-06-05
Earth microbial co-occurrence network reveals interconnection pattern across microbiomes.Bin Ma, Yiling Wang, Shudi Ye, Shan Liu, Erinne Stirling, Jack A Gilbert, Karoline Faust, Rob Knight, Janet K Jansson, Cesar Cardona, Lisa Röttjers, Jianming XuMicrobiome2020-06-04
Paroxetine Administration Affects Microbiota and Bile Acid Levels in Mice.Frederik Dethloff, Fernando Vargas, Emmanuel Elijah, Robert Quinn, Dong Ik Park, David P Herzog, Marianne B Müller, Emily C Gentry, Rob Knight, Antonio Gonzalez, Pieter C Dorrestein, Christoph W TurckFrontiers In Psychiatry2020-06-04
Microbial Ecology of Atlantic Salmon (Salmo salar) Hatcheries: Impacts of the Built Environment on Fish Mucosal Microbiota.Jeremiah J Minich, Greg D Poore, Khattapan Jantawongsri, Colin Johnston, Kate Bowie, John Bowman, Rob Knight, Barbara Nowak, Eric E AllenApplied And Environmental Microbiology2020-06-02
Comparative Genomics and Metabolomics in the Genus .Daniel Männle, Shaun M K McKinnie, Shrikant S Mantri, Katharina Steinke, Zeyin Lu, Bradley S Moore, Nadine Ziemert, Leonard KaysserMSystems2020-06-02
Predicting COVID-19 Incidence Using Anosmia and Other COVID-19 Symptomatology: Preliminary Analysis Using Google and Twitter.Bharat A Panuganti, Aria Jafari, Bridget MacDonald, Adam S DeCondeOtolaryngology--head And Neck Surgery : Official Journal Of American Academy Of Otolaryngology-Head And Neck Surgery2020-06-02
Association of chemosensory dysfunction and COVID-19 in patients presenting with influenza-like symptoms.Carol H Yan, Farhoud Faraji, Divya P Prajapati, Christine E Boone, Adam S DeCondeInternational Forum Of Allergy & Rhinology2020-06-01
A multiomic analysis of in situ coral-turf algal interactions.Ty N F Roach, Mark Little, Milou G I Arts, Joel Huckeba, Andreas F Haas, Emma E George, Robert A Quinn, Ana G Cobián-Güemes, Douglas S Naliboff, Cynthia B Silveira, Mark J A Vermeij, Linda Wegley Kelly, Pieter C Dorrestein, Forest RohwerProceedings Of The National Academy Of Sciences Of The United States Of America2020-06-01
SARS-CoV-2 and human milk: What is the evidence?Kimberly A Lackey, Ryan M Pace, Janet E Williams, Lars Bode, Sharon M Donovan, Kirsi M Järvinen, Antti E Seppo, Daniel J Raiten, Courtney L Meehan, Mark A McGuire, Michelle K McGuireMaternal & Child Nutrition2020-05-30
Detecting personal microbiota signatures at artificial crime scenes.Jarrad T Hampton-Marcell, Peter Larsen, Tifani Anton, Lauren Cralle, Naseer Sangwan, Simon Lax, Neil Gottel, Mariana Salas-Garcia, Candace Young, George Duncan, Jose V Lopez, Jack A GilbertForensic Science International2020-05-30
Modeling of nitrogen fixation and polymer production in the heterotrophic diazotroph DJ.Diego Tec Campos, Cristal Zuñiga, Anurag Passi, John Del Toro, Juan D Tibocha-Bonilla, Alejandro Zepeda, Michael J Betenbaugh, Karsten ZenglerMetabolic Engineering Communications2020-05-30
Targeted Depletion of Bacteria from Mixed Populations by Programmable Adhesion with Antagonistic Competitor Cells.See-Yeun Ting, Esteban Martínez-García, Shuo Huang, Savannah K Bertolli, Katherine A Kelly, Kevin J Cutler, Elizabeth D Su, Hui Zhi, Qing Tang, Matthew C Radey, Manuela Raffatellu, S Brook Peterson, Víctor de Lorenzo, Joseph D MougousCell Host & Microbe2020-05-28
Developmental Immaturity of Siglec Receptor Expression on Neonatal Alveolar Macrophages Predisposes to Severe Group B Streptococcal Infection.Sean J Lund, Kathryn A Patras, Jacqueline M Kimmey, Asami Yamamura, Lindsay D Butcher, Pamela G B Del Rosario, Gilberto E Hernandez, Alyssa M McCoy, Omar Lakhdari, Victor Nizet, Lawrence S PrinceIScience2020-05-28
Permissive microbiome characterizes human subjects with a neurovascular disease cavernous angioma.Sean P Polster, Anukriti Sharma, Ceylan Tanes, Alan T Tang, Patricia Mericko, Ying Cao, Julián Carrión-Penagos, Romuald Girard, Janne Koskimäki, Dongdong Zhang, Agnieszka Stadnik, Sharbel G Romanos, Seán B Lyne, Robert Shenkar, Kimberly Yan, Cornelia Lee, Amy Akers, Leslie Morrison, Myranda Robinson, Atif Zafar, Kyle Bittinger, Helen Kim, Jack A Gilbert, Mark L Kahn, Le Shen, Issam A AwadNature Communications2020-05-27
Reducing transmission of SARS-CoV-2.Kimberly A Prather, Chia C Wang, Robert T SchooleyScience (New York, N.Y.)2020-05-27
Improving Quantitative Power in Digital PCR through Digital High-Resolution Melting.April Aralar, Yixu Yuan, Kevin Chen, Yunshu Geng, Daniel Ortiz Velez, Mridu Sinha, Shelley M Lawrence, Stephanie I FraleyJournal Of Clinical Microbiology2020-05-26
A biochemically-interpretable machine learning classifier for microbial GWAS.Erol S Kavvas, Laurence Yang, Jonathan M Monk, David Heckmann, Bernhard O PalssonNature Communications2020-05-22
A genetic interaction map centered on cohesin reveals auxiliary factors involved in sister chromatid cohesion in .Su Ming Sun, Amandine Batté, Mireille Elmer, Sophie C van der Horst, Tibor van Welsem, Gordon Bean, Trey Ideker, Fred van Leeuwen, Haico van AttikumJournal Of Cell Science2020-05-22
Interfacing gene circuits with microelectronics through engineered population dynamics.M Omar Din, Aida Martin, Ivan Razinkov, Nicholas Csicsery, Jeff HastyScience Advances2020-05-22
All major cholesterol-dependent cytolysins use glycans as cellular receptors.Lucy K Shewell, Christopher J Day, Freda E-C Jen, Thomas Haselhorst, John M Atack, Josephine F Reijneveld, Arun Everest-Dass, David B A James, Kristina M Boguslawski, Stephan Brouwer, Christine M Gillen, Zhenyao Luo, Bostjan Kobe, Victor Nizet, Mark von Itzstein, Mark J Walker, Adrienne W Paton, James C Paton, Victor J Torres, Michael P JenningsScience Advances2020-05-22
Depletion of the Microbiome Alters the Recruitment of Neuronal Ensembles of Oxycodone Intoxication and Withdrawal.Sierra Simpson, Adam Kimbrough, Brent Boomhower, Rio McLellan, Marcella Hughes, Kokila Shankar, Giordano de Guglielmo, Olivier GeorgeENeuro2020-05-21
Engineering of multiple trypsin/chymotrypsin sites in Cry3A to enhance its activity against Monochamus alternatus Hope larvae.Yajie Guo, Yafang Wang, Anthony J O'Donoghue, Zhenze Jiang, Rebeca Carballar-Lejarazú, Guanghong Liang, Xia Hu, Rong Wang, Lei Xu, Xiong Guan, Feiping Zhang, Songqing WuPest Management Science2020-05-20
Temporal, Environmental, and Biological Drivers of the Mucosal Microbiome in a Wild Marine Fish, Scomber japonicus.Jeremiah J Minich, Semar Petrus, Julius D Michael, Todd P Michael, Rob Knight, Eric E AllenMSphere2020-05-20
Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals.Alba Grifoni, Daniela Weiskopf, Sydney I Ramirez, Jose Mateus, Jennifer M Dan, Carolyn Rydyznski Moderbacher, Stephen A Rawlings, Aaron Sutherland, Lakshmanane Premkumar, Ramesh S Jadi, Daniel Marrama, Aravinda M de Silva, April Frazier, Aaron F Carlin, Jason A Greenbaum, Bjoern Peters, Florian Krammer, Davey M Smith, Shane Crotty, Alessandro SetteCell2020-05-20
An anti-inflammatory isoflavone from soybean inoculated with a marine fungus C23-3.Jing-Ming Yang, Ya-Yue Liu, Wen-Cong Yang, Xiao-Xiang Ma, Ying-Ying Nie, Evgenia Glukhov, Lena Gerwick, William H Gerwick, Xiao-Ling Lei, Yi ZhangBioscience, Biotechnology, And Biochemistry2020-05-20
Therapeutic CMP-Nonulosonates against Multidrug-Resistant .Sunita Gulati, Ian C Schoenhofen, Theresa Lindhout-Djukic, Melissa J Schur, Corinna S Landig, Sudeshna Saha, Lingquan Deng, Lisa A Lewis, Bo Zheng, Ajit Varki, Sanjay RamJournal Of Immunology (Baltimore, Md. : 1950)2020-05-20
A protein kinase A-regulated network encodes short- and long-lived cellular memories.Yanfei Jiang, Zohreh AkhavanAghdam, Yutian Li, Brian M Zid, Nan HaoScience Signaling2020-05-19
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.Francesco Asnicar, Andrew Maltez Thomas, Francesco Beghini, Claudia Mengoni, Serena Manara, Paolo Manghi, Qiyun Zhu, Mattia Bolzan, Fabio Cumbo, Uyen May, Jon G Sanders, Moreno Zolfo, Evguenia Kopylova, Edoardo Pasolli, Rob Knight, Siavash Mirarab, Curtis Huttenhower, Nicola SegataNature Communications2020-05-19
Opportunistic Invasive Infection by Group A Streptococcus During Anti-Interleukin-6 Immunotherapy.Shyra Wilde, Katherine L Olivares, Victor Nizet, Hal M Hoffman, Suhas Radhakrishna, Christopher N LaRockThe Journal Of Infectious Diseases2020-05-18
A Nitric Oxide-Releasing Topical Medication as a Potential Treatment Option for Atopic Dermatitis through Antimicrobial and Anti-Inflammatory Activity.Emma Guttman-Yassky, Richard L Gallo, Ana B Pavel, Teruaki Nakatsuji, Randall Li, Ning Zhang, Elizabeth Messersmith, Tomoko Maeda-ChubachiThe Journal Of Investigative Dermatology2020-05-16
Rapid isolation of potent SARS-CoV-2 neutralizing antibodies and protection in a small animal model.Thomas F Rogers, Fangzhu Zhao, Deli Huang, Nathan Beutler, Alison Burns, Wan-Ting He, Oliver Limbo, Chloe Smith, Ge Song, Jordan Woehl, Linlin Yang, Robert K Abbott, Sean Callaghan, Elijah Garcia, Jonathan Hurtado, Mara Parren, Linghang Peng, James Ricketts, Michael J Ricciardi, Stephen A Rawlings, Davey M Smith, David Nemazee, John R Teijaro, James E Voss, Raiees Andrabi, Bryan Briney, Elise Landais, Devin Sok, Joseph G Jardine, Dennis R BurtonBioRxiv : The Preprint Server For Biology2020-05-15
Key clinical research priorities for the pediatric community during the COVID-19 pandemic.Gary J Noel, Jonathan M Davis, Octavio Ramilo, John S Bradley, Edward ConnorPediatric Research2020-05-15
Author Correction: A Engineered immunogen binding to alum adjuvant enhances humoral immunity.Tyson J Moyer, Yu Kato, Wuhbet Abraham, Jason Y H Chang, Daniel W Kulp, Nicki Watson, Hannah L Turner, Sergey Menis, Robert K Abbott, Jinal N Bhiman, Mariane B Melo, Hayley A Simon, Sara Herrera-De la Mata, Shu Liang, Gregory Seumois, Yash Agarwal, Na Li, Dennis R Burton, Andrew B Ward, William R Schief, Shane Crotty, Darrell J IrvineNature Medicine2020-05-15
Dynamic resource allocation drives growth under nitrogen starvation in eukaryotes.Juan D Tibocha-Bonilla, Manish Kumar, Anne Richelle, Rubén D Godoy-Silva, Karsten Zengler, Cristal ZuñigaNPJ Systems Biology And Applications2020-05-15
Frequency of Dosing of Cephalexin for Oral Step-Down Therapy of Pediatric Osteoarticular Infections Caused by Methicillin-Sensitive Staphylococcus Aureus.Nanda Ramchandar, John Arnold, Chris Cannavino, John S BradleyThe Pediatric Infectious Disease Journal2020-05-14
Mersaquinone, A New Tetracene Derivative from the Marine-Derived sp. EG1 Exhibiting Activity against Methicillin-Resistant (MRSA).Min Cheol Kim, Reiko Cullum, Ali M S Hebishy, Hala A Mohamed, Ahmed H I Faraag, Nehad M Salah, Mohamed S Abdelfattah, William FenicalAntibiotics (Basel, Switzerland)2020-05-14
Reproducible molecular networking of untargeted mass spectrometry data using GNPS.Allegra T Aron, Emily C Gentry, Kerry L McPhail, Louis-Félix Nothias, Mélissa Nothias-Esposito, Amina Bouslimani, Daniel Petras, Julia M Gauglitz, Nicole Sikora, Fernando Vargas, Justin J J van der Hooft, Madeleine Ernst, Kyo Bin Kang, Christine M Aceves, Andrés Mauricio Caraballo-Rodríguez, Irina Koester, Kelly C Weldon, Samuel Bertrand, Catherine Roullier, Kunyang Sun, Richard M Tehan, Cristopher A Boya P, Martin H Christian, Marcelino Gutiérrez, Aldo Moreno Ulloa, Javier Andres Tejeda Mora, Randy Mojica-Flores, Johant Lakey-Beitia, Victor Vásquez-Chaves, Yilue Zhang, Angela I Calderón, Nicole Tayler, Robert A Keyzers, Fidele Tugizimana, Nombuso Ndlovu, Alexander A Aksenov, Alan K Jarmusch, Robin Schmid, Andrew W Truman, Nuno Bandeira, Mingxun Wang, Pieter C DorresteinNature Protocols2020-05-13
Presentation of the Julius M. Friedenwald Medal to Gail A. Hecht, MD, MS.David W Hecht, Kim E BarrettGastroenterology2020-05-11
T cell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers.Prabhu S Arunachalam, Tysheena P Charles, Vineet Joag, Venkata S Bollimpelli, Madeleine K D Scott, Florian Wimmers, Samantha L Burton, Celia C Labranche, Caroline Petitdemange, Sailaja Gangadhara, Tiffany M Styles, Clare F Quarnstrom, Korey A Walter, Thomas J Ketas, Traci Legere, Pradeep Babu Jagadeesh Reddy, Sudhir Pai Kasturi, Anthony Tsai, Bertrand Z Yeung, Shakti Gupta, Mark Tomai, John Vasilakos, George M Shaw, Chil-Yong Kang, John P Moore, Shankar Subramaniam, Purvesh Khatri, David Montefiori, Pamela A Kozlowski, Cynthia A Derdeyn, Eric Hunter, David Masopust, Rama R Amara, Bali PulendranNature Medicine2020-05-11
Exposure of to Environmental Stress and Clinically Used Antibiotics Reveals Common Proteome Response among Pathogenic Mycobacteria.Rajoana Rojony, Lia Danelishvili, Anaamika Campeau, Jacob M Wozniak, David J Gonzalez, Luiz E BermudezMicroorganisms2020-05-09
Sex-dependent associations between addiction-related behaviors and the microbiome in outbred rats.Veronica L Peterson, Jerry B Richards, Paul J Meyer, Raul Cabrera-Rubio, Jordan A Tripi, Christopher P King, Oksana Polesskaya, Amelie Baud, Apurva S Chitre, Thomaz F S Bastiaanssen, Leah Solberg Woods, Fiona Crispie, Timothy G Dinan, Paul D Cotter, Abraham A Palmer, John F CryanEBioMedicine2020-05-08
Transcriptome and translatome profiles of Streptomyces species in different growth phases.Woori Kim, Soonkyu Hwang, Namil Lee, Yongjae Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan ChoScientific Data2020-05-08
Comparison of metal-bound and unbound structures of aminopeptidase B proteins from Escherichia coli and Yersinia pestis.George Minasov, Matthew R Lam, Monica Rosas-Lemus, Joanna Sławek, Magdalena Woinska, Ivan G Shabalin, Ludmilla Shuvalova, Bernhard Ø Palsson, Adam Godzik, Wladek Minor, Karla J F SatchellProtein Science : A Publication Of The Protein Society2020-05-08
Microbiome profile associated with malignant pleural effusion.Samira Shojaee, Anukriti Sharma, Neil Gottel, Trinidad Sanchez, Jack A Gilbert, Najib M RahmanPloS One2020-05-08
Executive Summary: Therapeutic Monitoring of Vancomycin for Serious Methicillin-Resistant Staphylococcus aureus Infections: A Revised Consensus Guideline and Review of the American Society of Health-System Pharmacists, the Infectious Diseases Society of America, the Pediatric Infectious Diseases Society, and the Society of Infectious Diseases Pharmacists.Michael J Rybak, Jennifer Le, Thomas Lodise, Donald Levine, John Bradley, Catherine Liu, Bruce Mueller, Manjunath Pai, Annie Wong-Beringer, John C Rotschafer, Keith Rodvold, Holly D Maples, Benjamin M LomaestroJournal Of The Pediatric Infectious Diseases Society2020-05-06
Bladder bacterial diversity differs in continent and incontinent women: a cross-sectional study.Travis K Price, Huaiying Lin, Xiang Gao, Krystal J Thomas-White, Evann E Hilt, Elizabeth R Mueller, Alan J Wolfe, Qunfeng Dong, Linda BrubakerAmerican Journal Of Obstetrics And Gynecology2020-05-05
Missed or delayed diagnosis of Kawasaki disease during the 2019 novel coronavirus disease (COVID-19) pandemic.Ashraf S Harahsheh, Nagib Dahdah, Jane W Newburger, Michael A Portman, Maryam Piram, Robert Tulloh, Brian W McCrindle, Sarah D de Ferranti, Rolando Cimaz, Dongngan T Truong, Jane C BurnsThe Journal Of Pediatrics2020-05-03
An update on the role of the microbiome in non-alcoholic fatty liver disease pathogenesis, diagnosis, and treatment.Marialena Mouzaki, Rohit LoombaCurrent Treatment Options In Gastroenterology2020-05-02
A Community Letter Regarding Sharing Biomolecular Simulation Data for COVID-19.Rommie E Amaro, Adrian J MulhollandJournal Of Chemical Information And Modeling2020-05-01
A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.David E Gordon, Gwendolyn M Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Kris M White, Matthew J O'Meara, Veronica V Rezelj, Jeffrey Z Guo, Danielle L Swaney, Tia A Tummino, Ruth Hüttenhain, Robyn M Kaake, Alicia L Richards, Beril Tutuncuoglu, Helene Foussard, Jyoti Batra, Kelsey Haas, Maya Modak, Minkyu Kim, Paige Haas, Benjamin J Polacco, Hannes Braberg, Jacqueline M Fabius, Manon Eckhardt, Margaret Soucheray, Melanie J Bennett, Merve Cakir, Michael J McGregor, Qiongyu Li, Bjoern Meyer, Ferdinand Roesch, Thomas Vallet, Alice Mac Kain, Lisa Miorin, Elena Moreno, Zun Zar Chi Naing, Yuan Zhou, Shiming Peng, Ying Shi, Ziyang Zhang, Wenqi Shen, Ilsa T Kirby, James E Melnyk, John S Chorba, Kevin Lou, Shizhong A Dai, Inigo Barrio-Hernandez, Danish Memon, Claudia Hernandez-Armenta, Jiankun Lyu, Christopher J P Mathy, Tina Perica, Kala Bharath Pilla, Sai J Ganesan, Daniel J Saltzberg, Ramachandran Rakesh, Xi Liu, Sara B Rosenthal, Lorenzo Calviello, Srivats Venkataramanan, Jose Liboy-Lugo, Yizhu Lin, Xi-Ping Huang, YongFeng Liu, Stephanie A Wankowicz, Markus Bohn, Maliheh Safari, Fatima S Ugur, Cassandra Koh, Nastaran Sadat Savar, Quang Dinh Tran, Djoshkun Shengjuler, Sabrina J Fletcher, Michael C O'Neal, Yiming Cai, Jason C J Chang, David J Broadhurst, Saker Klippsten, Phillip P Sharp, Nicole A Wenzell, Duygu Kuzuoglu-Ozturk, Hao-Yuan Wang, Raphael Trenker, Janet M Young, Devin A Cavero, Joseph Hiatt, Theodore L Roth, Ujjwal Rathore, Advait Subramanian, Julia Noack, Mathieu Hubert, Robert M Stroud, Alan D Frankel, Oren S Rosenberg, Kliment A Verba, David A Agard, Melanie Ott, Michael Emerman, Natalia Jura, Mark von Zastrow, Eric Verdin, Alan Ashworth, Olivier Schwartz, Christophe d'Enfert, Shaeri Mukherjee, Matt Jacobson, Harmit S Malik, Danica G Fujimori, Trey Ideker, Charles S Craik, Stephen N Floor, James S Fraser, John D Gross, Andrej Sali, Bryan L Roth, Davide Ruggero, Jack Taunton, Tanja Kortemme, Pedro Beltrao, Marco Vignuzzi, Adolfo García-Sastre, Kevan M Shokat, Brian K Shoichet, Nevan J KroganNature2020-04-30
QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data.Mehrbod Estaki, Lingjing Jiang, Nicholas A Bokulich, Daniel McDonald, Antonio González, Tomasz Kosciolek, Cameron Martino, Qiyun Zhu, Amanda Birmingham, Yoshiki Vázquez-Baeza, Matthew R Dillon, Evan Bolyen, J Gregory Caporaso, Rob KnightCurrent Protocols In Bioinformatics2020-04-29
Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes.Nathan Mih, Jonathan M Monk, Xin Fang, Edward Catoiu, David Heckmann, Laurence Yang, Bernhard O PalssonBMC Bioinformatics2020-04-29
Visualizing 'omic feature rankings and log-ratios using Qurro.Marcus W Fedarko, Cameron Martino, James T Morton, Antonio González, Gibraan Rahman, Clarisse A Marotz, Jeremiah J Minich, Eric E Allen, Rob KnightNAR Genomics And Bioinformatics2020-04-28
A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria.Jordan E Bisanz, Paola Soto-Perez, Cecilia Noecker, Alexander A Aksenov, Kathy N Lam, Grace E Kenney, Elizabeth N Bess, Henry J Haiser, Than S Kyaw, Feiqiao B Yu, Vayu M Rekdal, Connie W Y Ha, Suzanne Devkota, Emily P Balskus, Pieter C Dorrestein, Emma Allen-Vercoe, Peter J TurnbaughCell Host & Microbe2020-04-28
Encoding Membrane-Potential-Based Memory within a Microbial Community.Chih-Yu Yang, Maja Bialecka-Fornal, Colleen Weatherwax, Joseph W Larkin, Arthur Prindle, Jintao Liu, Jordi Garcia-Ojalvo, Gürol M SüelCell Systems2020-04-27
Detection of Nucleocapsid Antibody to SARS-CoV-2 is More Sensitive than Antibody to Spike Protein in COVID-19 Patients.Peter D Burbelo, Francis X Riedo, Chihiro Morishima, Stephen Rawlings, Davey Smith, Sanchita Das, Jeffrey R Strich, Daniel S Chertow, Richard T Davey, Jeffrey I CohenMedRxiv : The Preprint Server For Health Sciences2020-04-24
Functional Microbial Responses to Alcohol Abstinence in Patients With Alcohol Use Disorder.Bei Gao, Atoosa Emami, Rongrong Zhou, Sonja Lang, Yi Duan, Yanhan Wang, Lu Jiang, Rohit Loomba, David A Brenner, Peter Stärkel, Bernd SchnablFrontiers In Physiology2020-04-24
Active Delivery of VLPs Promotes Anti-Tumor Activity in a Mouse Ovarian Tumor Model.Chao Wang, Berta Esteban Fernández de Ávila, Rodolfo Mundaca-Uribe, Miguel Angel Lopez-Ramirez, Doris E Ramírez-Herrera, Sourabh Shukla, Nicole F Steinmetz, Joseph WangSmall (Weinheim An Der Bergstrasse, Germany)2020-04-24
One-Day Construction of Multiplex Arrays to Harness Natural CRISPR-Cas Systems.Robert M Cooper, Jeff HastyACS Synthetic Biology2020-04-22
Host Cathelicidin Exacerbates Group B Urinary Tract Infection.Kathryn A Patras, Alison Coady, Priyanka Babu, Samuel R Shing, Albert D Ha, Emma Rooholfada, Stephanie L Brandt, Matthew Geriak, Richard L Gallo, Victor NizetMSphere2020-04-22
Complete Genome Sequence of Strains FMAS_KW1, FMAS_KW2 and FMAS_AW1 Isolated from Leptospirosis Patients from Karawanalla and Awissawella, Sri Lanka.Indika Senevirathna, Dinesha Jayasundara, Joshua P Lefler, Kira L Chaiboonm, Janith Warnasekara, Suneth Agampodi, Michael A Matthias, Joseph M VinetzJournal Of Genomics2020-04-22
Implication of gut microbiota in the association between infant antibiotic exposure and childhood obesity and adiposity accumulation.Ling-Wei Chen, Jia Xu, Shu E Soh, Izzuddin M Aris, Mya-Thway Tint, Peter D Gluckman, Kok Hian Tan, Lynette Pei-Chi Shek, Yap-Seng Chong, Fabian Yap, Keith M Godfrey, Jack A Gilbert, Neerja Karnani, Yung Seng LeeInternational Journal Of Obesity (2005)2020-04-22
Temporal Dynamics of the Adult Female Lower Urinary Tract Microbiota.Travis K Price, Birte Wolff, Thomas Halverson, Roberto Limeira, Linda Brubaker, Qunfeng Dong, Elizabeth R Mueller, Alan J WolfeMBio2020-04-21
Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates.Joana Damas, Graham M Hughes, Kathleen C Keough, Corrie A Painter, Nicole S Persky, Marco Corbo, Michael Hiller, Klaus-Peter Koepfli, Andreas R Pfenning, Huabin Zhao, Diane P Genereux, Ross Swofford, Katherine S Pollard, Oliver A Ryder, Martin T Nweeia, Kerstin Lindblad-Toh, Emma C Teeling, Elinor K Karlsson, Harris A LewinBioRxiv : The Preprint Server For Biology2020-04-18
Modified Sialic Acids on Mucus and Erythrocytes Inhibit Influenza A Virus Hemagglutinin and Neuraminidase Functions.Karen N Barnard, Brynn K Alford-Lawrence, David W Buchholz, Brian R Wasik, Justin R LaClair, Hai Yu, Rebekah Honce, Stefan Ruhl, Petar Pajic, Erin K Daugherity, Xi Chen, Stacey L Schultz-Cherry, Hector C Aguilar, Ajit Varki, Colin R ParrishJournal Of Virology2020-04-16
Have incidence rates of liver cancer peaked in the United States?Jessica L Petrick, Andrea A Florio, Rohit Loomba, Katherine A McGlynnCancer2020-04-15
Epithelial transport in digestive diseases: mice, monolayers, and mechanisms.Kim E BarrettAmerican Journal Of Physiology. Cell Physiology2020-04-15
Sensitivity in Detection of Antibodies to Nucleocapsid and Spike Proteins of Severe Acute Respiratory Syndrome Coronavirus 2 in Patients With Coronavirus Disease 2019.Peter D Burbelo, Francis X Riedo, Chihiro Morishima, Stephen Rawlings, Davey Smith, Sanchita Das, Jeffrey R Strich, Daniel S Chertow, Richard T Davey, Jeffrey I CohenThe Journal Of Infectious Diseases2020-04-14
How Neutrophils Meet Their End.Shelley M Lawrence, Ross Corriden, Victor NizetTrends In Immunology2020-04-14
Are we facing a crashing wave of neuropsychiatric sequelae of COVID-19? Neuropsychiatric symptoms and potential immunologic mechanisms.Emily A Troyer, Jordan N Kohn, Suzi HongBrain, Behavior, And Immunity2020-04-13
Genetically engineered control of phenotypic structure in microbial colonies.Philip Bittihn, Andriy Didovyk, Lev S Tsimring, Jeff HastyNature Microbiology2020-04-13
Enhanced Characterization of Drug Metabolism and the Influence of the Intestinal Microbiome: A Pharmacokinetic, Microbiome, and Untargeted Metabolomics Study.Alan K Jarmusch, Alison Vrbanac, Jeremiah D Momper, Joseph D Ma, Maher Alhaja, Marlon Liyanage, Rob Knight, Pieter C Dorrestein, Shirley M TsunodaClinical And Translational Science2020-04-13
SARS-CoV-2 and human milk: what is the evidence?Kimberly A Lackey, Ryan M Pace, Janet E Williams, Lars Bode, Sharon M Donovan, Kirsi M Järvinen, Antti E Seppo, Daniel J Raiten, Courtney L Meehan, Mark A McGuire, Michelle K McGuireMedRxiv : The Preprint Server For Health Sciences2020-04-11
Clinical Best Practice Advice for Hepatology and Liver Transplant Providers During the COVID-19 Pandemic: AASLD Expert Panel Consensus Statement.Oren K Fix, Bilal Hameed, Robert J Fontana, Ryan M Kwok, Brendan M McGuire, David C Mulligan, Daniel S Pratt, Mark W Russo, Michael L Schilsky, Elizabeth C Verna, Rohit Loomba, David E Cohen, Jorge A Bezerra, K Rajender Reddy, Raymond T ChungHepatology (Baltimore, Md.)2020-04-11
The Systems Biology of Drug Metabolizing Enzymes and Transporters: Relevance to Quantitative Systems Pharmacology.Sanjay K Nigam, Kevin T Bush, Vibha Bhatnagar, Samuel M Poloyac, Jeremiah D MomperClinical Pharmacology And Therapeutics2020-04-11
Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing.Christian Lieven, Moritz E Beber, Brett G Olivier, Frank T Bergmann, Meric Ataman, Parizad Babaei, Jennifer A Bartell, Lars M Blank, Siddharth Chauhan, Kevin Correia, Christian Diener, Andreas Dräger, Birgitta E Ebert, Janaka N Edirisinghe, José P Faria, Adam M Feist, Georgios Fengos, Ronan M T Fleming, Beatriz García-Jiménez, Vassily Hatzimanikatis, Wout van Helvoirt, Christopher S Henry, Henning Hermjakob, Markus J Herrgård, Ali Kaafarani, Hyun Uk Kim, Zachary King, Steffen Klamt, Edda Klipp, Jasper J Koehorst, Matthias König, Meiyappan Lakshmanan, Dong-Yup Lee, Sang Yup Lee, Sunjae Lee, Nathan E Lewis, Filipe Liu, Hongwu Ma, Daniel Machado, Radhakrishnan Mahadevan, Paulo Maia, Adil Mardinoglu, Gregory L Medlock, Jonathan M Monk, Jens Nielsen, Lars Keld Nielsen, Juan Nogales, Intawat Nookaew, Bernhard O Palsson, Jason A Papin, Kiran R Patil, Mark Poolman, Nathan D Price, Osbaldo Resendis-Antonio, Anne Richelle, Isabel Rocha, Benjamín J Sánchez, Peter J Schaap, Rahuman S Malik Sheriff, Saeed Shoaie, Nikolaus Sonnenschein, Bas Teusink, Paulo Vilaça, Jon Olav Vik, Judith A H Wodke, Joana C Xavier, Qianqian Yuan, Maksim Zakhartsev, Cheng ZhangNature Biotechnology2020-04-09
Gut-derived uremic toxin handling in vivo requires OAT-mediated tubular secretion in chronic kidney disease.Kevin T Bush, Prabhleen Singh, Sanjay K NigamJCI Insight2020-04-09
USPSTF 2020 Recommendations on Screening for Asymptomatic Bacterial Vaginosis in Pregnancy.Amanda L Lewis, Louise C LaurentJAMA2020-04-08
Computational Approach to Identifying Universal Macrophage Biomarkers.Dharanidhar Dang, Sahar Taheri, Soumita Das, Pradipta Ghosh, Lawrence S Prince, Debashis SahooFrontiers In Physiology2020-04-08
Nonlinear Biosynthetic Assembly of Alpiniamide by a Hybrid /-AT PKS-NRPS.Renata Sigrist, Hanna Luhavaya, Shaun M K McKinnie, Amanda Ferreira da Silva, Igor D Jurberg, Bradley S Moore, Luciana Gonzaga de OliveiraACS Chemical Biology2020-04-06
The circadian clock and darkness control natural competence in cyanobacteria.Arnaud Taton, Christian Erikson, Yiling Yang, Benjamin E Rubin, Scott A Rifkin, James W Golden, Susan S GoldenNature Communications2020-04-03
High-Throughput Screening of Kawasaki Disease Sera for Antiviral Antibodies.Daniel Quiat, Tomasz Kula, Chisato Shimizu, John T Kanegaye, Adriana H Tremoulet, Zachary Pitkowsky, MaryBeth Son, Jane W Newburger, Stephen J Elledge, Jane C BurnsThe Journal Of Infectious Diseases2020-04-02
Gut Microbiota-Derived Propionate Regulates the Expression of Reg3 Mucosal Lectins and Ameliorates Experimental Colitis in Mice.Danica Bajic, Adrian Niemann, Anna-Katharina Hillmer, Raquel Mejias-Luque, Sena Bluemel, Melissa Docampo, Maja C Funk, Elena Tonin, Michael Boutros, Bernd Schnabl, Dirk H Busch, Tsuyoshi Miki, Roland M Schmid, Marcel R M van den Brink, Markus Gerhard, Christoph K Stein-ThoeringerJournal Of Crohn's & Colitis2020-04-01
Palstimolide A: A Complex Polyhydroxy Macrolide with Antiparasitic Activity.Lena Keller, Jair L Siqueira-Neto, Julia M Souza, Korina Eribez, Gregory M LaMonte, Jennifer E Smith, William H GerwickMolecules (Basel, Switzerland)2020-03-31
Genetic Determinants Enabling Medium-Dependent Adaptation to Nafcillin in Methicillin-Resistant Staphylococcus aureus.Michael J Salazar, Henrique Machado, Nicholas A Dillon, Hannah Tsunemoto, Richard Szubin, Samira Dahesh, Joseph Pogliano, George Sakoulas, Bernhard O Palsson, Victor Nizet, Adam M FeistMSystems2020-03-31
Executive Summary: Therapeutic Monitoring of Vancomycin for Serious Methicillin-Resistant Staphylococcus aureus Infections: A Revised Consensus Guideline and Review of the American Society of Health-System Pharmacists, the Infectious Diseases Society of America, the Pediatric Infectious Diseases Society, and the Society of Infectious Diseases Pharmacists.Michael J Rybak, Jennifer Le, Thomas P Lodise, Donald P Levine, John S Bradley, Catherine Liu, Bruce A Mueller, Manjunath P Pai, Annie Wong-Beringer, John C Rotschafer, Keith A Rodvold, Holly D Maples, Benjamin M LomaestroPharmacotherapy2020-03-29
Two cases of type-a meningitis within the same week in the same hospital are phylogenetically unrelated but recently exchanged capsule genes.Yves Terrat, Lauge Farnaes, John Bradley, Nicolas Tromas, B Jesse ShapiroMicrobial Genomics2020-03-26
High Protein Intake Is Associated With Histological Disease Activity in Patients With NAFLD.Sonja Lang, Anna Martin, Fedja Farowski, Hilmar Wisplinghoff, Maria J G T Vehreschild, Jinyuan Liu, Marcin Krawczyk, Angela Nowag, Anne Kretzschmar, Jens Herweg, Bernd Schnabl, Xin M Tu, Frank Lammert, Tobias Goeser, Frank Tacke, Kathrin Heinzer, Philipp Kasper, Hans-Michael Steffen, Münevver DemirHepatology Communications2020-03-26
COVID-19, Mental Health and Aging: A Need for New Knowledge to Bridge Science and Service.Ipsit V Vahia, Dan G Blazer, Gwenn S Smith, Jordan F Karp, David C Steffens, Brent P Forester, Rajesh Tampi, Marc Agronin, Dilip V Jeste, Charles F ReynoldsThe American Journal Of Geriatric Psychiatry : Official Journal Of The American Association For Geriatric Psychiatry2020-03-25
An atlas of human metabolism.Jonathan L Robinson, Pınar Kocabaş, Hao Wang, Pierre-Etienne Cholley, Daniel Cook, Avlant Nilsson, Mihail Anton, Raphael Ferreira, Iván Domenzain, Virinchi Billa, Angelo Limeta, Alex Hedin, Johan Gustafsson, Eduard J Kerkhoven, L Thomas Svensson, Bernhard O Palsson, Adil Mardinoglu, Lena Hansson, Mathias Uhlén, Jens NielsenScience Signaling2020-03-24
Fermentable fibers induce rapid macro- and micronutrient depletion in Toll-like receptor 5-deficient mice.Rachel M Golonka, Beng San Yeoh, Yaqi Li, Piu Saha, Ahmed A Abokor, Xi Cheng, Xia Xiao, Darshan Shimoga Chandrashekar, Sooryanarayana Varambally, David J Gonzalez, A Catharine Ross, Matam Vijay-KumarAmerican Journal Of Physiology. Gastrointestinal And Liver Physiology2020-03-23
A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing.David E Gordon, Gwendolyn M Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Matthew J O'Meara, Jeffrey Z Guo, Danielle L Swaney, Tia A Tummino, Ruth Hüttenhain, Robyn M Kaake, Alicia L Richards, Beril Tutuncuoglu, Helene Foussard, Jyoti Batra, Kelsey Haas, Maya Modak, Minkyu Kim, Paige Haas, Benjamin J Polacco, Hannes Braberg, Jacqueline M Fabius, Manon Eckhardt, Margaret Soucheray, Melanie J Bennett, Merve Cakir, Michael J McGregor, Qiongyu Li, Zun Zar Chi Naing, Yuan Zhou, Shiming Peng, Ilsa T Kirby, James E Melnyk, John S Chorba, Kevin Lou, Shizhong A Dai, Wenqi Shen, Ying Shi, Ziyang Zhang, Inigo Barrio-Hernandez, Danish Memon, Claudia Hernandez-Armenta, Christopher J P Mathy, Tina Perica, Kala B Pilla, Sai J Ganesan, Daniel J Saltzbe