ArticleAuthorsJournalDate
Drugs and Bugs: The Gut-Brain Axis and Substance Use Disorders.Sierra Simpson, Rio Mclellan, Emma Wellmeyer, Frederic Matalon, Olivier GeorgeJournal Of Neuroimmune Pharmacology : The Official Journal Of The Society On NeuroImmune Pharmacology2021-10-25
Population Pharmacokinetic Modeling and Probability of Pharmacodynamic Target Attainment for Ceftazidime-Avibactam in Pediatric Patients Aged 3 Months and Older.Richard C Franzese, Lynn McFadyen, Kenny J Watson, Todd Riccobene, Timothy J Carrothers, Manoli Vourvahis, Phylinda L S Chan, Susan Raber, John S Bradley, Mark LovernClinical Pharmacology And Therapeutics2021-10-23
Hepatocellular Carcinoma Risk Assessment for Patients With Advanced Fibrosis After Eradication of Hepatitis C Virus.Nobuharu Tamaki, Masayuki Kurosaki, Yutaka Yasui, Nami Mori, Keiji Tsuji, Chitomi Hasebe, Kouji Joko, Takehiro Akahane, Koichiro Furuta, Haruhiko Kobashi, Hiroyuki Kimura, Hitoshi Yagisawa, Hiroyuki Marusawa, Masahiko Kondo, Yuji Kojima, Hideo Yoshida, Yasushi Uchida, Toshifumi Tada, Shinichiro Nakamura, Satoshi Yasuda, Hidenori Toyoda, Rohit Loomba, Namiki IzumiHepatology Communications2021-10-22
Specialized Metabolite Mediated Predation Defense in the Marine Actinobacterium SalinisporaRobert N Tuttle, Greg W Rouse, Gabriel Castro-Falcón, Chambers C Hughes, Paul R JensenApplied And Environmental Microbiology2021-10-20
Antimicrobials from a feline commensal bacterium inhibit skin infection by drug-resistant S. pseudintermediusAlan M O'Neill, Kate A Worthing, Nikhil Kulkarni, Fengwu Li, Teruaki Nakatsuji, Dominic McGrosso, Robert H Mills, Gayathri Kalla, Joyce Y Cheng, Jacqueline M Norris, Kit Pogliano, Joe Pogliano, David J Gonzalez, Richard L GalloELife2021-10-19
Microbial diversity in tropical marine sediments assessed using culture-dependent and culture-independent techniques.Alyssa M Demko, Nastassia V Patin, Paul R JensenEnvironmental Microbiology2021-10-11
Reconstitution of an intact clock reveals mechanisms of circadian timekeeping.Archana G Chavan, Jeffrey A Swan, Joel Heisler, Cigdem Sancar, Dustin C Ernst, Mingxu Fang, Joseph G Palacios, Rebecca K Spangler, Clive R Bagshaw, Sarvind Tripathi, Priya Crosby, Susan S Golden, Carrie L Partch, Andy LiWangScience (New York, N.Y.)2021-10-08
SARS-CoV-2 infection generates tissue-localized immunological memory in humans.Maya M L Poon, Ksenia Rybkina, Yu Kato, Masaru Kubota, Rei Matsumoto, Nathaniel I Bloom, Zeli Zhang, Kathryn M Hastie, Alba Grifoni, Daniela Weiskopf, Steven B Wells, Basak B Ural, Nora Lam, Peter A Szabo, Pranay Dogra, Yoon S Lee, Joshua I Gray, Marissa C Bradley, Maigan A Brusko, Todd M Brusko, Erica O Saphire, Thomas J Connors, Alessandro Sette, Shane Crotty, Donna L FarberScience Immunology2021-10-07
A posteriori dietary patterns better explain variations of the gut microbiome than individual markers in the American Gut Project.Aurélie Cotillard, Agnès Cartier-Meheust, Nicole S Litwin, Soline Chaumont, Mathilde Saccareau, Franck Lejzerowicz, Julien Tap, Hana Koutnikova, Diana Gutierrez Lopez, Daniel McDonald, Se Jin Song, Rob Knight, Muriel Derrien, Patrick VeigaThe American Journal Of Clinical Nutrition2021-10-07
Vitamin B-12 and the Gastrointestinal Microbiome: A Systematic Review.Heather M Guetterman, Samantha L Huey, Rob Knight, Allison M Fox, Saurabh Mehta, Julia L FinkelsteinAdvances In Nutrition (Bethesda, Md.)2021-10-06
Uniform Manifold Approximation and Projection (UMAP) Reveals Composite Patterns and Resolves Visualization Artifacts in Microbiome Data.George Armstrong, Cameron Martino, Gibraan Rahman, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Gal Mishne, Rob KnightMSystems2021-10-05
Spatial metabolomics identifies localized chemical changes in heart tissue during chronic cardiac Chagas Disease.Danya A Dean, Gautham Gautham, Jair L Siqueira-Neto, James H McKerrow, Pieter C Dorrestein, Laura-Isobel McCallPLoS Neglected Tropical Diseases2021-10-04
Update on the Role of the Gut Microbiota on Alcohol-Associated Liver Disease.Bernd SchnablGastroenterology & Hepatology2021-10-04
Unique virulence role of post-translocational chaperone PrsA in shaping secretome.Zhao-Yi Wu, Anaamika Campeau, Chao-Hsien Liu, David J Gonzalez, Masaya Yamaguchi, Shigetada Kawabata, Chieh-Hsien Lu, Chian-Yu Lai, Hao-Chieh Chiu, Yung-Chi ChangVirulence2021-10-01
Iron-regulatory genes are associated with Neuroimaging measures in HIV infection.Christine Fennema-Notestine, Tricia A Thornton-Wells, Todd Hulgan, Scott Letendre, Ronald J Ellis, Donald R Franklin, Albert M Anderson, Robert K Heaton, Cinnamon S Bloss, Igor Grant, Asha R Kallianpur, Brain Imaging And Behavior2021-10-01
Dietary Neu5Ac Intervention Protects Against Atherosclerosis Associated With Human-Like Neu5Gc Loss.Kunio Kawanishi, Joanna K Coker, Kaare V Grunddal, Chirag Dhar, Jason Hsiao, Karsten Zengler, Nissi Varki, Ajit Varki, Philip L S M GordtsArteriosclerosis, Thrombosis, And Vascular Biology2021-09-30
Bacterial Membrane-Derived Vesicles Attenuate Vancomycin Activity against Methicillin-Resistant .Monika Kumaraswamy, Kamilla Wiull, Bishnu Joshi, George Sakoulas, Armin Kousha, Gustav Vaaje-Kolstad, Mona Johannessen, Kristin Hegstad, Victor Nizet, Fatemeh AskarianMicroorganisms2021-09-29
Microbial Ecology and Evolution Are Essential for Understanding Pandemics.Megan E Frederickson, Aspen T ReeseMBio2021-09-28
Determinants of SARS-CoV-2 entry and replication in airway mucosal tissue and susceptibility in smokers.Tsuguhisa Nakayama, Ivan T Lee, Sizun Jiang, Matthias S Matter, Carol H Yan, Jonathan B Overdevest, Chien-Ting Wu, Yury Goltsev, Liang-Chun Shih, Chun-Kang Liao, Bokai Zhu, Yunhao Bai, Peter Lidsky, Yinghong Xiao, David Zarabanda, Angela Yang, Meena Easwaran, Christian M Schürch, Pauline Chu, Han Chen, Anna K Stalder, David R McIlwain, Nicole A Borchard, Phil A Gall, Sachi S Dholakia, Wei Le, Le Xu, Chih-Jaan Tai, Te-Huei Yeh, Elizabeth Erickson-Direnzo, Jason M Duran, Kirsten D Mertz, Peter H Hwang, Jasmin D Haslbauer, Peter K Jackson, Thomas Menter, Raul Andino, Peter D Canoll, Adam S DeConde, Zara M Patel, Alexandar Tzankov, Garry P Nolan, Jayakar V NayakCell Reports. Medicine2021-09-28
Detection and quantification of Mycobacterium tuberculosis antigen CFP10 in serum and urine for the rapid diagnosis of active tuberculosis disease.Marva Seifert, Eva Vargas, Victor Ruiz-Valdepeñas Montiel, Joseph Wang, Timothy C Rodwell, Antonino CatanzaroScientific Reports2021-09-28
Discovery and Mechanism of SARS-CoV-2 Main Protease Inhibitors.Sarah Huff, Indrasena Reddy Kummetha, Shashi Kant Tiwari, Matthew B Huante, Alex E Clark, Shaobo Wang, William Bray, Davey Smith, Aaron F Carlin, Mark Endsley, Tariq M RanaJournal Of Medicinal Chemistry2021-09-27
SARS-CoV-2 Variants of Concern.Jun Yong Choi, Davey M SmithYonsei Medical Journal2021-09-27
Gut epithelial IL-27 confers intestinal immunity through the induction of intraepithelial lymphocytes.Chia-Hao Lin, Mei-Chi Chen, Ling-Li Lin, David A Christian, Booki Min, Christopher A Hunter, Li-Fan LuThe Journal Of Experimental Medicine2021-09-23
Restriction factor compendium for influenza A virus reveals a mechanism for evasion of autophagy.Laura Martin-Sancho, Shashank Tripathi, Ariel Rodriguez-Frandsen, Lars Pache, Maite Sanchez-Aparicio, Michael J McGregor, Kelsey M Haas, Danielle L Swaney, Thong T Nguyen, João I Mamede, Christopher Churas, Dexter Pratt, Sara B Rosenthal, Laura Riva, Courtney Nguyen, Nish Beltran-Raygoza, Stephen Soonthornvacharin, Guojun Wang, David Jimenez-Morales, Paul D De Jesus, Hong M Moulton, David A Stein, Max W Chang, Chris Benner, Trey Ideker, Randy A Albrecht, Judd F Hultquist, Nevan J Krogan, Adolfo García-Sastre, Sumit K ChandaNature Microbiology2021-09-23
Mass spectrometry-based metabolomics in microbiome investigations.Anelize Bauermeister, Helena Mannochio-Russo, Letícia V Costa-Lotufo, Alan K Jarmusch, Pieter C DorresteinNature Reviews. Microbiology2021-09-22
Challenges in Determining the Role of Microbiome Evolution in Barrett's Esophagus and Progression to Esophageal Adenocarcinoma.Caitlin Guccione, Rena Yadlapati, Shailja Shah, Rob Knight, Kit CurtiusMicroorganisms2021-09-22
Detection of sulfate-reducing bacteria as an indicator for successful mitigation of sulfide production.Avishek Dutta, Fernando Valle, Thomas Goldman, Jeff Keating, Ellen Burke, Nicole Williamson, Reinhard Dirmeier, Jeff S BowmanApplied And Environmental Microbiology2021-09-22
Continental-Scale Paddy Soil Bacterial Community Structure, Function, and Biotic Interaction.Hong-Yi Li, Hang Wang, Xin-Hua Tao, Xian-Zhe Wang, Wei-Zheng Jin, Jack A Gilbert, Yong-Guan Zhu, Zhi-Jian ZhangMSystems2021-09-21
Cell-intrinsic and -extrinsic roles of miRNAs in regulating T cell immunity.Sunglim Cho, Jiayi Dong, Li-Fan LuImmunological Reviews2021-09-21
Chemical Proportionality within Molecular Networks.Daniel Petras, Andrés Mauricio Caraballo-Rodríguez, Alan K Jarmusch, Carlos Molina-Santiago, Julia M Gauglitz, Emily C Gentry, Pedro Belda-Ferre, Diego Romero, Shirley M Tsunoda, Pieter C Dorrestein, Mingxun WangAnalytical Chemistry2021-09-17
Tender and swollen joint counts are poorly associated with disability in chikungunya arthritis compared to rheumatoid arthritis.Hugh Watson, Ramão Luciano Nogueira-Hayd, Maony Rodrigues-Moreno, Felipe Naveca, Giulia Calusi, Karol Suchowiecki, Gary S Firestein, Gary Simon, Aileen Y ChangScientific Reports2021-09-17
Mechanisms for control of skin immune function by the microbiome.Teruaki Nakatsuji, Joyce Y Cheng, Richard L GalloCurrent Opinion In Immunology2021-09-16
Gut Metabolites Are More Predictive of Disease and Cohoused States than Gut Bacterial Features in a Polycystic Ovary Syndrome-Like Mouse Model.Bryan Ho, Daniel Ryback, Basilin Benson, Cayla N Mason, Pedro J Torres, Robert A Quinn, Varykina G Thackray, Scott T KelleyMSystems2021-09-14
Reduced gut microbiome diversity in people with HIV who have distal neuropathic pain.Ronald J Ellis, Robert K Heaton, Sara Gianella, Gibraan Rahman, Rob KnightThe Journal Of Pain2021-09-13
Oligosaccharides and Microbiota in Human Milk Are Interrelated at 3 Months Postpartum in a Cohort of Women with a High Prevalence of Gestational Impaired Glucose Tolerance.Lauren LeMay-Nedjelski, Chloe Yonemitsu, Michelle R Asbury, James Butcher, Sylvia H Ley, Anthony J Hanley, Alex Kiss, Sharon Unger, Julia K Copeland, Pauline W Wang, Alain Stintzi, Lars Bode, Deborah L O'ConnorThe Journal Of Nutrition2021-09-11
Gut microbiota alterations in response to sleep length among African-origin adults.Na Fei, Candice Choo-Kang, Sirimon Reutrakul, Stephanie J Crowley, Dale Rae, Kweku Bedu-Addo, Jacob Plange-Rhule, Terrence E Forrester, Estelle V Lambert, Pascal Bovet, Walter Riesen, Wolfgang Korte, Amy Luke, Brian T Layden, Jack A Gilbert, Lara R DugasPloS One2021-09-08
Trivalent Subunit Vaccine Candidates for COVID-19 and Their Delivery Devices.Oscar A Ortega-Rivera, Matthew D Shin, Angela Chen, Veronique Beiss, Miguel A Moreno-Gonzalez, Miguel A Lopez-Ramirez, Maria Reynoso, Hong Wang, Brett L Hurst, Joseph Wang, Jonathan K Pokorski, Nicole F SteinmetzJournal Of The American Chemical Society2021-09-07
Vaccine genetics of IGHV1-2 VRC01-class broadly neutralizing antibody precursor naïve human B cells.Jeong Hyun Lee, Laura Toy, Justin T Kos, Yana Safonova, William R Schief, Colin Havenar-Daughton, Corey T Watson, Shane CrottyNPJ Vaccines2021-09-06
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes.George W Armstrong, Kalen Cantrell, Shi Huang, Daniel McDonald, Niina Haiminen, Anna Paola Carrieri, Qiyun Zhu, Antonio Gonzalez, Imran McGrath, Kristen Beck, Daniel Hakim, Aki S Havulinna, Guillaume Méric, Teemu Niiranen, Leo Lahti, Veikko Salomaa, Mohit Jain, Michael Inouye, Austin D Swafford, Ho-Cheol Kim, Laxmi Parida, Yoshiki Vázquez-Baeza, Rob KnightGenome Research2021-09-03
Resurgence of SARS-CoV-2 Infection in a Highly Vaccinated Health System Workforce.Jocelyn Keehner, Lucy E Horton, Nancy J Binkin, Louise C Laurent, David Pride, Christopher A Longhurst, Shira R Abeles, Francesca J TorrianiThe New England Journal Of Medicine2021-09-01
Making Sense of a Scent-Sensing Metaphor for Microbes and Environmental Predictions.Jeff S BowmanMSystems2021-08-31
Structure-Based Optimization of Quinazolines as Cruzain and CATL Inhibitors.Elany Barbosa da Silva, Débora A Rocha, Isadora S Fortes, Wenqian Yang, Ludovica Monti, Jair L Siqueira-Neto, Conor R Caffrey, James McKerrow, Saulo F Andrade, Rafaela S FerreiraJournal Of Medicinal Chemistry2021-08-30
Airborne transmission of respiratory viruses.Chia C Wang, Kimberly A Prather, Josué Sznitman, Jose L Jimenez, Seema S Lakdawala, Zeynep Tufekci, Linsey C MarrScience (New York, N.Y.)2021-08-27
Decentralized vitamin C & D dual biosensor chip: Toward personalized immune system support.Víctor Ruiz-Valdepeñas Montiel, Juliane R Sempionatto, Eva Vargas, Eileen Bailey, Jennifer May, Andrea Bulbarello, André Düsterloh, Nathan Matusheski, Joseph WangBiosensors & Bioelectronics2021-08-26
Antibody responses induced by SHIV infection are more focused than those induced by soluble native HIV-1 envelope trimers in non-human primates.Jelle van Schooten, Marlies M van Haaren, Hui Li, Laura E McCoy, Colin Havenar-Daughton, Christopher A Cottrell, Judith A Burger, Patricia van der Woude, Leanne C Helgers, Ilhan Tomris, Celia C Labranche, David C Montefiori, Andrew B Ward, Dennis R Burton, John P Moore, Rogier W Sanders, Shane Crotty, George M Shaw, Marit J van GilsPLoS Pathogens2021-08-25
Machine Learning of Bacterial Transcriptomes Reveals Responses Underlying Differential Antibiotic Susceptibility.Anand V Sastry, Nicholas Dillon, Amitesh Anand, Saugat Poudel, Ying Hefner, Sibei Xu, Richard Szubin, Adam M Feist, Victor Nizet, Bernhard PalssonMSphere2021-08-25
Relating sinking and suspended microbial communities in the California Current Ecosystem: Digestion resistance and the contributions of phytoplankton taxa to export.Bellineth Valencia, Michael R Stukel, Andrew E Allen, John P McCrow, Ariel Rabines, Brian Palenik, Michael R LandryEnvironmental Microbiology2021-08-25
Molecular Mirror Technology Facilitates High-Throughput, Accurate SARS-CoV-2 Testing.Susan Realegeno, Sara Hash, Charlene Wong, Roland Liu, Jovan Shepherd, Robert T Schooley, David A Lipson, Frederick Fung, Suresh Menon, David T PrideMicrobiology Spectrum2021-08-25
Antibody secreting cells are critically dependent on integrin α4β7/MAdCAM-1 for intestinal recruitment and control of the microbiota during chronic colitis.Christopher J Tyler, Mauricio Guzman, Luke R Lundborg, Shaila Yeasmin, Nadia Zgajnar, Paul Jedlicka, Giorgos Bamias, Jesús Rivera-NievesMucosal Immunology2021-08-25
Aryl hydrocarbon receptor deficiency in intestinal epithelial cells aggravates alcohol-related liver disease.Minyi Qian, Jun Liu, Danyang Zhao, Pengpeng Cai, Chuyue Pan, Wenxin Jia, Yingsheng Gao, Yufei Zhang, Nan Zhang, Yinan Zhang, Quan Zhang, Dalei Wu, Chengjie Shan, Meiling Zhang, Bernd Schnabl, Song Yang, Xu Shen, Lirui WangCellular And Molecular Gastroenterology And Hepatology2021-08-25
Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo.Ye Gao, Hyun Gyu Lim, Hans Verkler, Richard Szubin, Daniel Quach, Irina Rodionova, Ke Chen, James T Yurkovich, Byung-Kwan Cho, Bernhard O PalssonNucleic Acids Research2021-08-24
Early life gut microbiota is associated with rapid infant growth in Hispanics from Southern California.Tanya L Alderete, Roshonda B Jones, Justin P Shaffer, Elizabeth A Holzhausen, William B Patterson, Elham Kazemian, Lida Chatzi, Rob Knight, Jasmine F Plows, Paige K Berger, Michael I GoranGut Microbes2021-08-23
Intestinal virome and therapeutic potential of bacteriophages in liver disease.Cynthia Hsu, Yi Duan, Derrick E Fouts, Bernd SchnablJournal Of Hepatology2021-08-23
SARS-CoV-2 escape from a highly neutralizing COVID-19 convalescent plasma.Emanuele Andreano, Giulia Piccini, Danilo Licastro, Lorenzo Casalino, Nicole V Johnson, Ida Paciello, Simeone Dal Monego, Elisa Pantano, Noemi Manganaro, Alessandro Manenti, Rachele Manna, Elisa Casa, Inesa Hyseni, Linda Benincasa, Emanuele Montomoli, Rommie E Amaro, Jason S McLellan, Rino RappuoliProceedings Of The National Academy Of Sciences Of The United States Of America2021-08-21
An integrin αEβ7-dependent mechanism of IgA transcytosis requires direct plasma cell contact with intestinal epithelium.Mauricio Guzman, Luke R Lundborg, Shaila Yeasmin, Christopher J Tyler, Nadia R Zgajnar, Vanessa Taupin, Katarzyna Dobaczewska, Zbigniew Mikulski, Giorgos Bamias, Jesús Rivera-NievesMucosal Immunology2021-08-20
Glycocalyx crowding with mucin mimetics strengthens binding of soluble and virus-associated lectins to host cell glycan receptors.Daniel J Honigfort, Meghan O Altman, Pascal Gagneux, Kamil GodulaProceedings Of The National Academy Of Sciences Of The United States Of America2021-08-19
Host DNA Depletion in Saliva Samples for Improved Shotgun Metagenomics.Clarisse Marotz, Cristal Zuniga, Livia Zaramela, Rob Knight, Karsten ZenglerMethods In Molecular Biology (Clifton, N.J.)2021-08-19
A novel class of TMPRSS2 inhibitors potently block SARS-CoV-2 and MERS-CoV viral entry and protect human epithelial lung cells.Matthew Mahoney, Vishnu C Damalanka, Michael A Tartell, Dong Hee Chung, André Luiz Lourenço, Dustin Pwee, Anne E Mayer Bridwell, Markus Hoffmann, Jorine Voss, Partha Karmakar, Nurit P Azouz, Andrea M Klingler, Paul W Rothlauf, Cassandra E Thompson, Melody Lee, Lidija Klampfer, Christina L Stallings, Marc E Rothenberg, Stefan Pöhlmann, Sean P J Whelan, Anthony J O'Donoghue, Charles S Craik, James W JanetkaProceedings Of The National Academy Of Sciences Of The United States Of America2021-08-18
Microbiota and Fatty Liver Disease-the Known, the Unknown, and the Future.Sonja Lang, Bernd SchnablCell Host & Microbe2021-08-12
Risk factors for COVID-19 mortality in hospitalised children and adolescents in Brazil - Authors' reply.Eduardo A Oliveira, Enrico A Colosimo, Ana Cristina Simões E Silva, Robert H Mak, Daniella B Martelli, Ludmila R Silva, Hercílio Martelli-Júnior, Maria Christina L OliveiraThe Lancet. Child & Adolescent Health2021-08-10
Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus.Smruthi Karthikeyan, Andrew Nguyen, Daniel McDonald, Yijian Zong, Nancy Ronquillo, Junting Ren, Jingjing Zou, Sawyer Farmer, Greg Humphrey, Diana Henderson, Tara Javidi, Karen Messer, Cheryl Anderson, Robert Schooley, Natasha K Martin, Rob KnightMSystems2021-08-10
Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM.Aleksandar Antanasijevic, Leigh M Sewall, Christopher A Cottrell, Diane G Carnathan, Luis E Jimenez, Julia T Ngo, Jennifer B Silverman, Bettina Groschel, Erik Georgeson, Jinal Bhiman, Raiza Bastidas, Celia LaBranche, Joel D Allen, Jeffrey Copps, Hailee R Perrett, Kimmo Rantalainen, Fabien Cannac, Yuhe R Yang, Alba Torrents de la Peña, Rebeca Froes Rocha, Zachary T Berndsen, David Baker, Neil P King, Rogier W Sanders, John P Moore, Shane Crotty, Max Crispin, David C Montefiori, Dennis R Burton, William R Schief, Guido Silvestri, Andrew B WardNature Communications2021-08-10
Clinical Practice Guideline by the Pediatric Infectious Diseases Society and the Infectious Diseases Society of America: 2021 Guideline on Diagnosis and Management of Acute Hematogenous Osteomyelitis in Pediatrics.Charles R Woods, John S Bradley, Archana Chatterjee, Lawson A Copley, Joan Robinson, Matthew P Kronman, Antonio Arrieta, Sandra L Fowler, Christopher Harrison, Maria A Carrillo-Marquez, Sandra R Arnold, Stephen C Eppes, Laura P Stadler, Coburn H Allen, Lynnette J Mazur, C Buddy Creech, Samir S Shah, Theoklis Zaoutis, David S Feldman, Valéry LavergneJournal Of The Pediatric Infectious Diseases Society2021-08-05
Chemical Gradients of Plant Substrates in an Fungus Garden.Andrés Mauricio Caraballo-Rodríguez, Sara P Puckett, Kathleen E Kyle, Daniel Petras, Ricardo da Silva, Louis-Félix Nothias, Madeleine Ernst, Justin J J van der Hooft, Anupriya Tripathi, Mingxun Wang, Marcy J Balunas, Jonathan L Klassen, Pieter C DorresteinMSystems2021-08-03
Variation in Microbial Exposure at the Human-Animal Interface and the Implications for Microbiome-Mediated Health Outcome.Sahana Kuthyar, Aspen T ReeseMSystems2021-08-03
Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom.Aaron Oliver, Sheila Podell, Agnieszka Pinowska, Jesse C Traller, Sarah R Smith, Ryan McClure, Alex Beliaev, Pavlo Bohutskyi, Eric A Hill, Ariel Rabines, Hong Zheng, Lisa Zeigler Allen, Alan Kuo, Igor V Grigoriev, Andrew E Allen, David Hazlebeck, Eric E AllenScientific Reports2021-08-02
Sleep Disturbances are a Significant Predictor of Chikungunya Arthritis Flare Severity.Sarah R Tritsch, Richard Amdur, Liliana Encinales, Andres Cadena, Paige Fierbaugh, Geraldine Avendaño, Carlos Andres Herrera Gomez, Karol Suchowiecki, Evelyn Mendoza-Torres, Wendy Rosales, Dennys Jimenez, Carlos Alberto Perez Hernandez, Alfonso Sucerquia Hernandez, Paula Bruges Silvera, Yerlenis Galvis Crespo, Alberto David Cabana Jimenez, Jennifer Carolina Martinez Zapata, Christopher N Mores, Gary S Firestein, Gary Simon, Aileen Y ChangJournal Of Cellular Immunology2021-07-29
Oxitec and MosquitoMate in the United States: lessons for the future of gene drive mosquito control.Cynthia E Schairer, James Najera, Anthony A James, Omar S Akbari, Cinnamon S BlossPathogens And Global Health2021-07-27
Dietary selection pressures and their impact on the gut microbiome.Gertrude Ecklu-Mensah, Jack Gilbert, Suzanne DevkotaCellular And Molecular Gastroenterology And Hepatology2021-07-27
Emergence of an early SARS-CoV-2 epidemic in the United States.Mark Zeller, Karthik Gangavarapu, Catelyn Anderson, Allison R Smither, John A Vanchiere, Rebecca Rose, Daniel J Snyder, Gytis Dudas, Alexander Watts, Nathaniel L Matteson, Refugio Robles-Sikisaka, Maximilian Marshall, Amy K Feehan, Gilberto Sabino-Santos, Antoinette R Bell-Kareem, Laura D Hughes, Manar Alkuzweny, Patricia Snarski, Julia Garcia-Diaz, Rona S Scott, Lilia I Melnik, Raphaëlle Klitting, Michelle McGraw, Pedro Belda-Ferre, Peter DeHoff, Shashank Sathe, Clarisse Marotz, Nathan D Grubaugh, David J Nolan, Arnaud C Drouin, Kaylynn J Genemaras, Karissa Chao, Sarah Topol, Emily Spencer, Laura Nicholson, Stefan Aigner, Gene W Yeo, Lauge Farnaes, Charlotte A Hobbs, Louise C Laurent, Rob Knight, Emma B Hodcroft, Kamran Khan, Dahlene N Fusco, Vaughn S Cooper, Phillipe Lemey, Lauren Gardner, Susanna L Lamers, Jeremy P Kamil, Robert F Garry, Marc A Suchard, Kristian G AndersenCell2021-07-27
ACE2 Receptor-Modified Algae-Based Microrobot for Removal of SARS-CoV-2 in Wastewater.Fangyu Zhang, Zhengxing Li, Lu Yin, Qiangzhe Zhang, Nelly Askarinam, Rodolfo Mundaca-Uribe, Farshad Tehrani, Emil Karshalev, Weiwei Gao, Liangfang Zhang, Joseph WangJournal Of The American Chemical Society2021-07-22
Forming Consensus To Advance Urobiome Research.Linda Brubaker, Jean-Philippe F Gourdine, Nazema Y Siddiqui, Amanda Holland, Thomas Halverson, Roberto Limeria, David Pride, Lenore Ackerman, Catherine S Forster, Kristin M Jacobs, Krystal J Thomas-White, Catherine Putonti, Qunfeng Dong, Michael Weinstein, Emily S Lukacz, Lisa Karstens, Alan J WolfeMSystems2021-07-20
Nutritional Interventions and the Gut Microbiome in Children.Saurabh Mehta, Samantha L Huey, Daniel McDonald, Rob Knight, Julia L FinkelsteinAnnual Review Of Nutrition2021-07-20
Association Between the Urogenital Microbiome and Surgical Treatment Response in Women Undergoing Mid-urethral Sling Surgery for Mixed Urinary Incontinence.Holly E Richter, Megan U Carnes, Yuko M Komesu, Emily S Lukacz, Lily Arya, Megan Bradley, Rebecca G Rogers, Vivian W Sung, Nazema Y Siddiqui, Benjamin Carper, Donna Mazloomdoost, Darryl Dinwiddie, Marie G Gantz, American Journal Of Obstetrics And Gynecology2021-07-20
Special Collection on the Microbiome and Infection.Manuela Raffatellu, Andreas J BäumlerInfection And Immunity2021-07-19
Comparison of heat-inactivated and infectious SARS-CoV-2 across indoor surface materials shows comparable RT-qPCR viral signal intensity and persistence.Rodolfo A Salido, Victor J Cantú, Alex E Clark, Sandra L Leibel, Anahid Foroughishafiei, Anushka Saha, Abbas Hakim, Alhakam Nouri, Alma L Lastrella, Anelizze Castro-Martínez, Ashley Plascencia, Bhavika Kapadia, Bing Xia, Christopher Ruiz, Clarisse A Marotz, Daniel Maunder, Elijah S Lawrence, Elizabeth W Smoot, Emily Eisner, Evelyn S Crescini, Laura Kohn, Lizbeth Franco Vargas, Marisol Chacón, Maryann Betty, Michal Machnicki, Min Yi Wu, Nathan A Baer, Pedro Belda-Ferre, Peter De Hoff, Phoebe Seaver, R Tyler Ostrander, Rebecca Tsai, Shashank Sathe, Stefan Aigner, Sydney C Morgan, Toan T Ngo, Tom Barber, Willi Cheung, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Rebecca Fielding-Miller, Rob KnightBioRxiv : The Preprint Server For Biology2021-07-19
Dynamic Changes of the Fungal Microbiome in Alcohol Use Disorder.Phillipp Hartmann, Sonja Lang, Suling Zeng, Yi Duan, Xinlian Zhang, Yanhan Wang, Marina Bondareva, Andrey Kruglov, Derrick E Fouts, Peter Stärkel, Bernd SchnablFrontiers In Physiology2021-07-19
The microbiome and prostate cancer.Juan Javier-DesLoges, Rana R McKay, Austin D Swafford, Gregory D Sepich-Poore, Rob Knight, J Kellogg ParsonsProstate Cancer And Prostatic Diseases2021-07-15
A Pilot Study of Microbial Succession in Human Rib Skeletal Remains during Terrestrial Decomposition.Heather Deel, Alexandra L Emmons, Jennifer Kiely, Franklin E Damann, David O Carter, Aaron Lynne, Rob Knight, Zhenjiang Zech Xu, Sibyl Bucheli, Jessica L MetcalfMSphere2021-07-14
HIV vaccinology: 2021 update.Jeong Hyun Lee, Shane CrottySeminars In Immunology2021-07-13
A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity.Gongchao Jing, Yufeng Zhang, Lu Liu, Zengbin Wang, Zheng Sun, Rob Knight, Xiaoquan Su, Jian XuMSystems2021-07-13
Artificial intelligence guided discovery of a barrier-protective therapy in inflammatory bowel disease.Debashis Sahoo, Lee Swanson, Ibrahim M Sayed, Gajanan D Katkar, Stella-Rita Ibeawuchi, Yash Mittal, Rama F Pranadinata, Courtney Tindle, Mackenzie Fuller, Dominik L Stec, John T Chang, William J Sandborn, Soumita Das, Pradipta GhoshNature Communications2021-07-12
Quick-start infrastructure for untargeted metabolomics analysis in GNPS.Tiago F Leao, Chase M Clark, Anelize Bauermeister, Emmanuel O Elijah, Emily C Gentry, Makhai Husband, Michelli F Oliveira, Nuno Bandeira, Mingxun Wang, Pieter C DorresteinNature Metabolism2021-07-09
Publisher Correction: Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery.Bahar Behsaz, Edna Bode, Alexey Gurevich, Yan-Ni Shi, Florian Grundmann, Deepa Acharya, Andrés Mauricio Caraballo-Rodríguez, Amina Bouslimani, Morgan Panitchpakdi, Annabell Linck, Changhui Guan, Julia Oh, Pieter C Dorrestein, Helge B Bode, Pavel A Pevzner, Hosein MohimaniNature Communications2021-07-08
Ruminiclostridium 5, Parabacteroides distasonis, and bile acid profile are modulated by prebiotic diet and associate with facilitated sleep/clock realignment after chronic disruption of rhythms.Robert S Thompson, Michelle Gaffney, Shelby Hopkins, Tel Kelley, Antonio Gonzalez, Samuel J Bowers, Martha Hotz Vitaterna, Fred W Turek, Christine L Foxx, Christopher A Lowry, Fernando Vargas, Pieter C Dorrestein, Kenneth P Wright, Rob Knight, Monika FleshnerBrain, Behavior, And Immunity2021-07-06
Microbiome is not linked to clinical disease severity of familial Mediterranean fever in an international cohort of children.Seza Ozen, Holly L Lutz, Vanessa M Rivera, Andreas Reiff, Ezgi Deniz Batu, Edwin Anderson, Mariana Salas Garcia, Grace Aldrovandi, Tayfun Hilmi Akbaba, İlker Pazarbasi, Yelda Bilginer, Ayse Balat, Banu Balci-Peynircioglu, Jack A Gilbert, Fatma Dedeoglu, Jonathan S HausmannClinical And Experimental Rheumatology2021-07-05
Gut Microbiota in Liver Disease: What Do We Know and What Do We Not Know?Lu Jiang, Bernd SchnablPhysiology (Bethesda, Md.)2021-07-01
Display of the human mucinome with defined O-glycans by gene engineered cells.Rebecca Nason, Christian Büll, Andriana Konstantinidi, Lingbo Sun, Zilu Ye, Adnan Halim, Wenjuan Du, Daniel M Sørensen, Fabien Durbesson, Sanae Furukawa, Ulla Mandel, Hiren J Joshi, Leo Alexander Dworkin, Lars Hansen, Leonor David, Tina M Iverson, Barbara A Bensing, Paul M Sullam, Ajit Varki, Erik de Vries, Cornelis A M de Haan, Renaud Vincentelli, Bernard Henrissat, Sergey Y Vakhrushev, Henrik Clausen, Yoshiki NarimatsuNature Communications2021-07-01
The Relationships between HIV-1 Infection, History of Methamphetamine Use Disorder, and Soluble Biomarkers in Blood and Cerebrospinal Fluid.T Jordan Walter, Jennifer Iudicello, Debra Rosario Cookson, Donald Franklin, Bin Tang, Jared W Young, William Perry, Ronald Ellis, Robert K Heaton, Igor Grant, Arpi Minassian, Scott Letendre, On Behalf Of The Translational Methamphetamine Aids Research Center TmarcViruses2021-07-01
Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome.Shi Huang, Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu, Pedro Belda-Ferre, Yoshiki Vázquez-Baeza, Qiyun Zhu, Chenchen Ma, Congfa Li, Amir Zarrinpar, Yang-Yu Liu, Rob Knight, Jiachao ZhangMicrobiome2021-06-30
Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome.Celeste Allaband, Amulya Lingaraju, Cameron Martino, Baylee Russell, Anupriya Tripathi, Orit Poulsen, Ana Carolina Dantas Machado, Dan Zhou, Jin Xue, Emmanuel Elijah, Atul Malhotra, Pieter C Dorrestein, Rob Knight, Gabriel G Haddad, Amir ZarrinparMSystems2021-06-29
The neglected brothers come of age: B cells and cancer.Shabnam Shalapour, Michael KarinSeminars In Immunology2021-06-29
ORFograph: search for novel insecticidal protein genes in genomic and metagenomic assembly graphs.Tatiana Dvorkina, Anton Bankevich, Alexei Sorokin, Fan Yang, Boahemaa Adu-Oppong, Ryan Williams, Keith Turner, Pavel A PevznerMicrobiome2021-06-28
Associations between Afrotropical bats, eukaryotic parasites, and microbial symbionts.Holly L Lutz, Jack A Gilbert, Carl W DickMolecular Ecology2021-06-28
Microbiota Modulates Cardiac Transcriptional Responses to Intermittent Hypoxia and Hypercapnia.Dan Zhou, Jin Xue, Yukiko Miyamoto, Orit Poulsen, Lars Eckmann, Gabriel G HaddadFrontiers In Physiology2021-06-25
Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus.Henrique Machado, Yara Seif, George Sakoulas, Connor A Olson, Ying Hefner, Amitesh Anand, Ying Z Jones, Richard Szubin, Bernhard O Palsson, Victor Nizet, Adam M FeistCommunications Biology2021-06-25
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops.Matthew R Dillon, Evan Bolyen, Anja Adamov, Aeriel Belk, Emily Borsom, Zachary Burcham, Justine W Debelius, Heather Deel, Alex Emmons, Mehrbod Estaki, Chloe Herman, Christopher R Keefe, Jamie T Morton, Renato R M Oliveira, Andrew Sanchez, Anthony Simard, Yoshiki Vázquez-Baeza, Michal Ziemski, Hazuki E Miwa, Terry A Kerere, Carline Coote, Richard Bonneau, Rob Knight, Guilherme Oliveira, Piraveen Gopalasingam, Benjamin D Kaehler, Emily K Cope, Jessica L Metcalf, Michael S Robeson Ii, Nicholas A Bokulich, J Gregory CaporasoPLoS Computational Biology2021-06-24
induces maize-derived ethylene to promote virulence by engaging fungal G-protein signaling.Yong-Soon Park, Eli J Borrego, Xiquan Gao, Shawn A Christensen, Eric Schmelz, Alessandra Lanubile, Dillon A Drab, Will Cody, Huijuan Yan, Won-Bo Shim, Michael V KolomietsMolecular Plant-microbe Interactions : MPMI2021-06-24
Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth.Colton J Lloyd, Jonathan Monk, Laurence Yang, Ali Ebrahim, Bernhard O PalssonPLoS Computational Biology2021-06-23
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment.Robin Schmid, Daniel Petras, Louis-Félix Nothias, Mingxun Wang, Allegra T Aron, Annika Jagels, Hiroshi Tsugawa, Johannes Rainer, Mar Garcia-Aloy, Kai Dührkop, Ansgar Korf, Tomáš Pluskal, Zdeněk Kameník, Alan K Jarmusch, Andrés Mauricio Caraballo-Rodríguez, Kelly C Weldon, Melissa Nothias-Esposito, Alexander A Aksenov, Anelize Bauermeister, Andrea Albarracin Orio, Carlismari O Grundmann, Fernando Vargas, Irina Koester, Julia M Gauglitz, Emily C Gentry, Yannick Hövelmann, Svetlana A Kalinina, Matthew A Pendergraft, Morgan Panitchpakdi, Richard Tehan, Audrey Le Gouellec, Gajender Aleti, Helena Mannochio Russo, Birgit Arndt, Florian Hübner, Heiko Hayen, Hui Zhi, Manuela Raffatellu, Kimberly A Prather, Lihini I Aluwihare, Sebastian Böcker, Kerry L McPhail, Hans-Ulrich Humpf, Uwe Karst, Pieter C DorresteinNature Communications2021-06-22
Gut microbiota mediate the FGF21 adaptive stress response to chronic dietary protein-restriction in mice.Anthony Martin, Gertrude Ecklu-Mensah, Connie W Y Ha, Gustaf Hendrick, Donald K Layman, Jack Gilbert, Suzanne DevkotaNature Communications2021-06-22
Editorial: Regulators of a Regulator: Post-Transcriptional Regulation in Tregs.Xuyu Zhou, Li-Fan LuFrontiers In Immunology2021-06-22
The single-cell epigenomic and transcriptional landscape of immunity to influenza vaccination.Florian Wimmers, Michele Donato, Alex Kuo, Tal Ashuach, Shakti Gupta, Chunfeng Li, Mai Dvorak, Mariko Hinton Foecke, Sarah E Chang, Thomas Hagan, Sanne E De Jong, Holden T Maecker, Robbert van der Most, Peggie Cheung, Mario Cortese, Steven E Bosinger, Mark Davis, Nadine Rouphael, Shankar Subramaniam, Nir Yosef, Paul J Utz, Purvesh Khatri, Bali PulendranCell2021-06-22
Alterations in bile acid metabolizing gut microbiota and specific bile acid genes as a precision medicine to subclassify NAFLD.Na Jiao, Rohit Loomba, Zi-Huan Yang, Dingfeng Wu, Sa Fang, Richele Bettencourt, Ping Lan, Ruixin Zhu, Lixin ZhuPhysiological Genomics2021-06-21
Use of Autologous Bacteriotherapy to Treat Staphylococcus aureus in Patients With Atopic Dermatitis: A Randomized Double-blind Clinical Trial.Teruaki Nakatsuji, Richard L Gallo, Faiza Shafiq, Yun Tong, Kimberly Chun, Anna M Butcher, Joyce Y Cheng, Tissa R HataJAMA Dermatology2021-06-16
Host and gut microbial tryptophan metabolism and type 2 diabetes: an integrative analysis of host genetics, diet, gut microbiome and circulating metabolites in cohort studies.Qibin Qi, Jun Li, Bing Yu, Jee-Young Moon, Jin C Chai, Jordi Merino, Jie Hu, Miguel Ruiz-Canela, Casey Rebholz, Zheng Wang, Mykhaylo Usyk, Guo-Chong Chen, Bianca C Porneala, Wenshuang Wang, Ngoc Quynh Nguyen, Elena V Feofanova, Megan L Grove, Thomas J Wang, Robert E Gerszten, Josée Dupuis, Jordi Salas-Salvadó, Wei Bao, David L Perkins, Martha L Daviglus, Bharat Thyagarajan, Jianwen Cai, Tao Wang, JoAnn E Manson, Miguel A Martínez-González, Elizabeth Selvin, Kathryn M Rexrode, Clary B Clish, Frank B Hu, James B Meigs, Rob Knight, Robert D Burk, Eric Boerwinkle, Robert C KaplanGut2021-06-14
Colesevelam Reduces Ethanol-Induced Liver Steatosis in Humanized Gnotobiotic Mice.Noemí Cabré, Yi Duan, Cristina Llorente, Mary Conrad, Patrick Stern, Dennis Yamashita, Bernd SchnablCells2021-06-14
AI-guided discovery of the invariant host response to viral pandemics.Debashis Sahoo, Gajanan D Katkar, Soni Khandelwal, Mahdi Behroozikhah, Amanraj Claire, Vanessa Castillo, Courtney Tindle, MacKenzie Fuller, Sahar Taheri, Thomas F Rogers, Nathan Beutler, Sydney I Ramirez, Stephen A Rawlings, Victor Pretorius, Davey M Smith, Dennis R Burton, Laura E Crotty Alexander, Jason Duran, Shane Crotty, Jennifer M Dan, Soumita Das, Pradipta GhoshEBioMedicine2021-06-11
Clinical characteristics and risk factors for death among hospitalised children and adolescents with COVID-19 in Brazil: an analysis of a nationwide database.Eduardo A Oliveira, Enrico A Colosimo, Ana Cristina Simões E Silva, Robert H Mak, Daniella B Martelli, Ludmila R Silva, Hercílio Martelli-Júnior, Maria Christina L OliveiraThe Lancet. Child & Adolescent Health2021-06-11
Metformin inhibition of mitochondrial ATP and DNA synthesis abrogates NLRP3 inflammasome activation and pulmonary inflammation.Hongxu Xian, Yuan Liu, Alexandra Rundberg Nilsson, Raphaella Gatchalian, Timothy R Crother, Warren G Tourtellotte, Yi Zhang, German R Aleman-Muench, Gavin Lewis, Weixuan Chen, Sarah Kang, Melissa Luevanos, Dorit Trudler, Stuart A Lipton, Pejman Soroosh, John Teijaro, Juan Carlos de la Torre, Moshe Arditi, Michael Karin, Elsa Sanchez-LopezImmunity2021-06-10
SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment.Clarisse Marotz, Pedro Belda-Ferre, Farhana Ali, Promi Das, Shi Huang, Kalen Cantrell, Lingjing Jiang, Cameron Martino, Rachel E Diner, Gibraan Rahman, Daniel McDonald, George Armstrong, Sho Kodera, Sonya Donato, Gertrude Ecklu-Mensah, Neil Gottel, Mariana C Salas Garcia, Leslie Y Chiang, Rodolfo A Salido, Justin P Shaffer, Mac Kenzie Bryant, Karenina Sanders, Greg Humphrey, Gail Ackermann, Niina Haiminen, Kristen L Beck, Ho-Cheol Kim, Anna Paola Carrieri, Laxmi Parida, Yoshiki Vázquez-Baeza, Francesca J Torriani, Rob Knight, Jack Gilbert, Daniel A Sweeney, Sarah M AllardMicrobiome2021-06-08
Airborne transmission pathway for coastal water pollution.Matthew A Pendergraft, Derek J Grimes, Sarah N Giddings, Falk Feddersen, Charlotte M Beall, Christopher Lee, Mitchell V Santander, Kimberly A PratherPeerJ2021-06-07
Coevolutionary phage training leads to greater bacterial suppression and delays the evolution of phage resistance.Joshua M Borin, Sarit Avrani, Jeffrey E Barrick, Katherine L Petrie, Justin R MeyerProceedings Of The National Academy Of Sciences Of The United States Of America2021-06-04
Mining genomes to illuminate the specialized chemistry of life.Marnix H Medema, Tristan de Rond, Bradley S MooreNature Reviews. Genetics2021-06-03
Biotechnology for secure biocontainment designs in an emerging bioeconomy.Kathleen L Arnolds, Lukas R Dahlin, Lin Ding, Chao Wu, Jianping Yu, Wei Xiong, Cristal Zuniga, Yo Suzuki, Karsten Zengler, Jeffrey G Linger, Michael T GuarnieriCurrent Opinion In Biotechnology2021-06-03
Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers.Qiyun Zhu, Qiangchuan Hou, Shi Huang, Qianying Ou, Dongxue Huo, Yoshiki Vázquez-Baeza, Chaoping Cen, Victor Cantu, Mehrbod Estaki, Haibo Chang, Pedro Belda-Ferre, Ho-Cheol Kim, Kaining Chen, Rob Knight, Jiachao ZhangThe ISME Journal2021-06-02
Compositional Differences in the Oral Microbiome of E-cigarette Users.Jessica Chopyk, Christine M Bojanowski, John Shin, Alex Moshensky, Ana Lucia Fuentes, Saniya S Bonde, Dagni Chuki, David T Pride, Laura E Crotty AlexanderFrontiers In Microbiology2021-05-31
Individuals with substance use disorders have a distinct oral microbiome pattern.Tomasz Kosciolek, Teresa A Victor, Rayus Kuplicki, Maret Rossi, Mehrbod Estaki, Gail Ackermann, , Rob Knight, Martin P PaulusBrain, Behavior, & Immunity - Health2021-05-29
Non-alcoholic Steatohepatitis and HCC in a Hyperphagic Mouse Accelerated by Western Diet.Souradipta Ganguly, German Aleman Muench, Linshan Shang, Sara Brin Rosenthal, Gibraan Rahman, Ruoyu Wang, Yanhan Wang, Hyeok Choon Kwon, Anthony M Diomino, Tatiana Kisseleva, Pejman Soorosh, Mojgan Hosseini, Rob Knight, Bernd Schnabl, David A Brenner, Debanjan DharCellular And Molecular Gastroenterology And Hepatology2021-05-29
Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery.Bahar Behsaz, Edna Bode, Alexey Gurevich, Yan-Ni Shi, Florian Grundmann, Deepa Acharya, Andrés Mauricio Caraballo-Rodríguez, Amina Bouslimani, Morgan Panitchpakdi, Annabell Linck, Changhui Guan, Julia Oh, Pieter C Dorrestein, Helge B Bode, Pavel A Pevzner, Hosein MohimaniNature Communications2021-05-28
COVID-19 Severity Potentially Modulated by Cardiovascular-Disease-Associated Immune Dysregulation.Abby C Lee, Grant Castaneda, Wei Tse Li, Chengyu Chen, Neil Shende, Jaideep Chakladar, Pam R Taub, Eric Y Chang, Weg M OngkekoViruses2021-05-28
Recurrent urinary tract infection: Association of clinical profiles with urobiome composition in women.Lindsey A Burnett, Baylie R Hochstedler, Kelly Weldon, Alan J Wolfe, Linda BrubakerNeurourology And Urodynamics2021-05-26
Bromodomain protein BRD4 directs and sustains CD8 T cell differentiation during infection.J Justin Milner, Clara Toma, Sara Quon, Kyla Omilusik, Nicole E Scharping, Anup Dey, Miguel Reina-Campos, Hongtuyet Nguyen, Adam J Getzler, Huitian Diao, Bingfei Yu, Arnaud Delpoux, Tomomi M Yoshida, Deyao Li, Jun Qi, Adam Vincek, Stephen M Hedrick, Takeshi Egawa, Ming-Ming Zhou, Shane Crotty, Keiko Ozato, Matthew E Pipkin, Ananda W GoldrathThe Journal Of Experimental Medicine2021-05-26
Structure-based protein function prediction using graph convolutional networks.Vladimir Gligorijević, P Douglas Renfrew, Tomasz Kosciolek, Julia Koehler Leman, Daniel Berenberg, Tommi Vatanen, Chris Chandler, Bryn C Taylor, Ian M Fisk, Hera Vlamakis, Ramnik J Xavier, Rob Knight, Kyunghyun Cho, Richard BonneauNature Communications2021-05-26
The quantitative metabolome is shaped by abiotic constraints.Amir Akbari, James T Yurkovich, Daniel C Zielinski, Bernhard O PalssonNature Communications2021-05-26
Kawasaki Disease Patient Stratification and Pathway Analysis Based on Host Transcriptomic and Proteomic Profiles.Heather Jackson, Stephanie Menikou, Shea Hamilton, Andrew McArdle, Chisato Shimizu, Rachel Galassini, Honglei Huang, Jihoon Kim, Adriana Tremoulet, Adam Thorne, Roman Fischer, Marien I de Jonge, Taco Kuijpers, Victoria Wright, Jane C Burns, Climent Casals-Pascual, Jethro Herberg, Mike Levin, Myrsini Kaforou, On Behalf Of The Perform ConsortiumInternational Journal Of Molecular Sciences2021-05-26
Activatable Carbocyanine Dimers for Photoacoustic and Fluorescent Detection of Protease Activity.Colman Moore, Raina M Borum, Yash Mantri, Ming Xu, Pavla Fajtová, Anthony J O'Donoghue, Jesse V JokerstACS Sensors2021-05-26
Sequence determinants in the cathelicidin LL37 that promote inflammation via presentation of RNA to scavenger receptors.Nikhil N Kulkarni, Alan M O'Neill, Tatsuya Dokoshi, Elizabeth W C Luo, Gerard C L Wong, Richard L GalloThe Journal Of Biological Chemistry2021-05-25
Associations of healthy food choices with gut microbiota profiles.Kari K Koponen, Aaro Salosensaari, Matti O Ruuskanen, Aki S Havulinna, Satu Männistö, Pekka Jousilahti, Joonatan Palmu, Rodolfo Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Guillaume Meric, Susan Cheng, Michael Inouye, Mohit Jain, Teemu J Niiranen, Liisa M Valsta, Rob Knight, Veikko V SalomaaThe American Journal Of Clinical Nutrition2021-05-21
Hypoxia-Inducible Factor 1 Alpha Is Dispensable for Host Defense of Group B Streptococcus Colonization and Infection.Gregory R Lum, Vicki Mercado, Diede van Ens, Victor Nizet, Jacqueline M Kimmey, Kathryn A PatrasJournal Of Innate Immunity2021-05-21
Asymmetric localization of the cell division machinery during sporulation.Kanika Khanna, Javier Lopez Garrido, Joseph Sugie, Kit Pogliano, Elizabeth VillaELife2021-05-21
SARS-CoV-2 human T cell epitopes: Adaptive immune response against COVID-19.Alba Grifoni, John Sidney, Randi Vita, Bjoern Peters, Shane Crotty, Daniela Weiskopf, Alessandro SetteCell Host & Microbe2021-05-21
Impact of Vaginal Estrogen on the Urobiome in Postmenopausal Women With Recurrent Urinary Tract Infection.Carrie E Jung, Mehrbod Estaki, Jessica Chopyk, Bryn C Taylor, Antonio Gonzalez, Daniel McDonald, Jenny Shin, Kimberly Ferrante, Erika Wasenda, Quinn Lippmann, Rob Knight, David Pride, Emily S LukaczFemale Pelvic Medicine & Reconstructive Surgery2021-05-19
Cross-reactive serum and memory B-cell responses to spike protein in SARS-CoV-2 and endemic coronavirus infection.Ge Song, Wan-Ting He, Sean Callaghan, Fabio Anzanello, Deli Huang, James Ricketts, Jonathan L Torres, Nathan Beutler, Linghang Peng, Sirena Vargas, Jon Cassell, Mara Parren, Linlin Yang, Caroline Ignacio, Davey M Smith, James E Voss, David Nemazee, Andrew B Ward, Thomas Rogers, Dennis R Burton, Raiees AndrabiNature Communications2021-05-19
Are sialic acids involved in COVID-19 pathogenesis?Chirag Dhar, Aniruddha Sasmal, Sandra Diaz, Andrea Verhagen, Hai Yu, Wanqing Li, Xi Chen, Ajit VarkiGlycobiology2021-05-14
Challenges in benchmarking metagenomic profilers.Zheng Sun, Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen, Anna Paola Carrieri, Yoshiki Vázquez-Baeza, Laxmi Parida, Ho-Cheol Kim, Rob Knight, Yang-Yu LiuNature Methods2021-05-13
Dysregulation of Glycerophosphocholines in the Cutaneous Lesion Caused by in Experimental Murine Models.Adwaita R Parab, Diane Thomas, Sharon Lostracco-Johnson, Jair L Siqueira-Neto, James H McKerrow, Pieter C Dorrestein, Laura-Isobel McCallPathogens (Basel, Switzerland)2021-05-13
Taxonomic signatures of cause-specific mortality risk in human gut microbiome.Aaro Salosensaari, Ville Laitinen, Aki S Havulinna, Guillaume Meric, Susan Cheng, Markus Perola, Liisa Valsta, Georg Alfthan, Michael Inouye, Jeramie D Watrous, Tao Long, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Mohit Jain, Pekka Jousilahti, Veikko Salomaa, Rob Knight, Leo Lahti, Teemu NiiranenNature Communications2021-05-11
Intratumoral bacteria generate a new class of therapeutically relevant tumor antigens in melanoma.Gregory D Sepich-Poore, Hannah Carter, Rob KnightCancer Cell2021-05-11
3D Visualization of Immune Cell Populations in HIV-Infected Tissues via Clearing, Immunostaining, Confocal, and Light Sheet Fluorescence Microscopy.Tongyu Zhang, Auroni Gupta, Deborah Frederick, Laura Layman, Davey M Smith, Sara Gianella, Collin KiefferJournal Of Visualized Experiments : JoVE2021-05-06
Insight into the function and evolution of the Wood-Ljungdahl pathway in Actinobacteria.Jian-Yu Jiao, Li Fu, Zheng-Shuang Hua, Lan Liu, Nimaichand Salam, Peng-Fei Liu, Ai-Ping Lv, Geng Wu, Wen-Dong Xian, Qiyun Zhu, En-Min Zhou, Bao-Zhu Fang, Aharon Oren, Brian P Hedlund, Hong-Chen Jiang, Rob Knight, Lei Cheng, Wen-Jun LiThe ISME Journal2021-05-05
METTL3 regulates viral m6A RNA modification and host cell innate immune responses during SARS-CoV-2 infection.Na Li, Hui Hui, Bill Bray, Gwendolyn Michelle Gonzalez, Mark Zeller, Kristian G Anderson, Rob Knight, Davey Smith, Yinsheng Wang, Aaron F Carlin, Tariq M RanaCell Reports2021-05-03
Presence of asymptomatic cytomegalovirus and Epstein--Barr virus DNA in blood of persons with HIV starting antiretroviral therapy is associated with non-AIDS clinical events.Sara Gianella, Carlee Moser, Andrej Vitomirov, Ashley McKhann, Laura Layman, Brianna Scott, Gemma Caballero, Steven Lada, Ronald J Bosch, Martin Hoenigl, Nell Lurain, Alan Landay, Michael M Lederman, Peter W Hunt, Davey SmithAIDS (London, England)2021-05-01
Microbes and Geriatric Mental Health: Past, Present, and Future.Eleonora D Vaccariello, Tanya T NguyenInternational Psychogeriatrics2021-04-30
Gut microbiota through an evolutionary lens.Rachel N Carmody, Amar Sarkar, Aspen T ReeseScience (New York, N.Y.)2021-04-30
Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data.Lingjing Jiang, Niina Haiminen, Anna-Paola Carrieri, Shi Huang, Yoshiki Vã Zquez-Baeza, Laxmi Parida, Ho-Cheol Kim, Austin D Swafford, Rob Knight, Loki NatarajanBiometrics2021-04-29
Infant Gut Microbiome Is Enriched with Bifidobacteria longumssp. infantisin Old Order Mennoniteswith Traditional Farming Lifestyle.Antti E Seppo, Kevin Bu, Madina Jumabaeva, Juilee Thakar, RakinA Choudhury, Chloe Yonemitsu, Lars Bode, Camille A Martina, Maria Allen, Sabrina Tamburini, Enrica Piras, David S Wallach, R John Looney, Jose C Clemente, Kirsi M JärvinenAllergy2021-04-27
Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition.Clarisse Marotz, Kellen J Cavagnero, Se Jin Song, Daniel McDonald, Stephen Wandro, Greg Humphrey, MacKenzie Bryant, Gail Ackermann, Edgar Diaz, Rob KnightMSystems2021-04-27
Grincamycins P-T: Rearranged Angucyclines from the Marine Sediment-Derived sp. CNZ-748 Inhibit Cell Lines of the Rare Cancer Pseudomyxoma Peritonei.Zhuo Shang, Zachary E Ferris, Douglas Sweeney, Alexander B Chase, Chunhua Yuan, Yvonne Hui, Lukuan Hou, Ethan A Older, Dan Xue, Xiaoyu Tang, Weipeng Zhang, Prakash Nagarkatti, Mitzi Nagarkatti, Traci L Testerman, Paul R Jensen, Jie LiJournal Of Natural Products2021-04-26
Combined analysis of gut microbiota, diet and PNPLA3 polymorphism in biopsy-proven non-alcoholic fatty liver disease.Sonja Lang, Anna Martin, Xinlian Zhang, Fedja Farowski, Hilmar Wisplinghoff, Maria J G T Vehreschild, Marcin Krawczyk, Angela Nowag, Anne Kretzschmar, Claus Scholz, Philipp Kasper, Christoph Roderburg, Raphael Mohr, Frank Lammert, Frank Tacke, Bernd Schnabl, Tobias Goeser, Hans-Michael Steffen, Münevver DemirLiver International : Official Journal Of The International Association For The Study Of The Liver2021-04-25
The purine nucleoside phosphorylase pnp-1 regulates epithelial cell resistance to infection in C. elegans.Eillen Tecle, Crystal B Chhan, Latisha Franklin, Ryan S Underwood, Wendy Hanna-Rose, Emily R TroemelPLoS Pathogens2021-04-20
Adjuvanting a subunit COVID-19 vaccine to induce protective immunity.Prabhu S Arunachalam, Alexandra C Walls, Nadia Golden, Caroline Atyeo, Stephanie Fischinger, Chunfeng Li, Pyone Aye, Mary Jane Navarro, Lilin Lai, Venkata Viswanadh Edara, Katharina Röltgen, Kenneth Rogers, Lisa Shirreff, Douglas E Ferrell, Samuel Wrenn, Deleah Pettie, John C Kraft, Marcos C Miranda, Elizabeth Kepl, Claire Sydeman, Natalie Brunette, Michael Murphy, Brooke Fiala, Lauren Carter, Alexander G White, Meera Trisal, Ching-Lin Hsieh, Kasi Russell-Lodrigue, Christopher Monjure, Jason Dufour, Skye Spencer, Lara Doyle-Meyer, Rudolph P Bohm, Nicholas J Maness, Chad Roy, Jessica A Plante, Kenneth S Plante, Alex Zhu, Matthew J Gorman, Sally Shin, Xiaoying Shen, Jane Fontenot, Shakti Gupta, Derek T O'Hagan, Robbert Van Der Most, Rino Rappuoli, Robert L Coffman, David Novack, Jason S McLellan, Shankar Subramaniam, David Montefiori, Scott D Boyd, JoAnne L Flynn, Galit Alter, Francois Villinger, Harry Kleanthous, Jay Rappaport, Mehul S Suthar, Neil P King, David Veesler, Bali PulendranNature2021-04-19
Risk factors and characteristics associated with persistent smell loss in coronavirus disease 2019 (COVID-19) patients.Bita Shahrvini, Divya P Prajapati, Mena Said, Jacklyn Liu, Shanmukha Srinivas, Samuel Jayaraj, Valerie J Lund, Adam S DeConde, Matt Lechner, Carol H YanInternational Forum Of Allergy & Rhinology2021-04-17
Uremic Toxins in Organ Crosstalk.Jerome Lowenstein, Sanjay K NigamFrontiers In Medicine2021-04-16
Ten scientific reasons in support of airborne transmission of SARS-CoV-2.Trisha Greenhalgh, Jose L Jimenez, Kimberly A Prather, Zeynep Tufekci, David Fisman, Robert SchooleyLancet (London, England)2021-04-15
Urinary microbiota of women with recurrent urinary tract infection: collection and culture methods.Baylie R Hochstedler, Lindsey Burnett, Travis K Price, Carrie Jung, Alan J Wolfe, Linda BrubakerInternational Urogynecology Journal2021-04-14
Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection.Andre Mu, Daniel McDonald, Alan K Jarmusch, Cameron Martino, Caitriona Brennan, Mackenzie Bryant, Gregory C Humphrey, Julia Toronczak, Tara Schwartz, Dominic Nguyen, Gail Ackermann, Anthony D'Onofrio, Steffanie A Strathdee, Robert T Schooley, Pieter C Dorrestein, Rob Knight, Saima AslamMicrobiome2021-04-14
Functional landscape of SARS-CoV-2 cellular restriction.Laura Martin-Sancho, Mary K Lewinski, Lars Pache, Charlotte A Stoneham, Xin Yin, Mark E Becker, Dexter Pratt, Christopher Churas, Sara B Rosenthal, Sophie Liu, Stuart Weston, Paul D De Jesus, Alan M O'Neill, Anshu P Gounder, Courtney Nguyen, Yuan Pu, Heather M Curry, Aaron L Oom, Lisa Miorin, Ariel Rodriguez-Frandsen, Fan Zheng, Chunxiang Wu, Yong Xiong, Matthew Urbanowski, Megan L Shaw, Max W Chang, Christopher Benner, Thomas J Hope, Matthew B Frieman, Adolfo García-Sastre, Trey Ideker, Judd F Hultquist, John Guatelli, Sumit K ChandaMolecular Cell2021-04-13
Persistent Joint Pain Following Arthropod Virus Infections.Karol Suchowiecki, St Patrick Reid, Gary L Simon, Gary S Firestein, Aileen ChangCurrent Rheumatology Reports2021-04-13
MrHAMER yields highly accurate single molecule viral sequences enabling analysis of intra-host evolution.Christian M Gallardo, Shiyi Wang, Daniel J Montiel-Garcia, Susan J Little, Davey M Smith, Andrew L Routh, Bruce E TorbettNucleic Acids Research2021-04-13
Structural Characterization of a Minimal Antibody against Human APOBEC3B.Heng Tang, Özlem Demir, Fredy Kurniawan, William L Brown, Ke Shi, Nicholas H Moeller, Michael A Carpenter, Christopher Belica, Kayo Orellana, Guocheng Du, Aaron M LeBeau, Rommie E Amaro, Reuben S Harris, Hideki AiharaViruses2021-04-12
Marinoterpins A-C: Rare Linear Merosesterterpenoids from Marine-Derived Actinomycete Bacteria of the Family Streptomycetaceae.Min Cheol Kim, Jaclyn M Winter, Ratnakar N Asolkar, Chollaratt Boonlarppradab, Reiko Cullum, William FenicalThe Journal Of Organic Chemistry2021-04-12
Genetic suppression of lethal mutations in fatty acid biosynthesis mediated by a secondary lipid synthase.Marco N Allemann, Eric E AllenApplied And Environmental Microbiology2021-04-09
Influence of Intermittent Hypoxia/Hypercapnia on Atherosclerosis, Gut Microbiome, and Metabolome.Jin Xue, Celeste Allaband, Dan Zhou, Orit Poulsen, Cameron Martino, Lingjing Jiang, Anupriya Tripathi, Emmanuel Elijah, Pieter C Dorrestein, Rob Knight, Amir Zarrinpar, Gabriel G HaddadFrontiers In Physiology2021-04-08
Children with Autism and Their Typically Developing Siblings Differ in Amplicon Sequence Variants and Predicted Functions of Stool-Associated Microbes.Maude M David, Christine Tataru, Jena Daniels, Jessey Schwartz, Jessica Keating, Jarrad Hampton-Marcell, Neil Gottel, Jack A Gilbert, Dennis P WallMSystems2021-04-06
Differential T cell reactivity to endemic coronaviruses and SARS-CoV-2 in community and health care workers.Ricardo da Silva Antunes, Suresh Pallikkuth, Erin Williams, Dawen Yu Esther, Jose Mateus, Lorenzo Quiambao, Eric Wang, Stephen A Rawlings, Daniel Stadlbauer, Kaijun Jiang, Fatima Amanat, David Arnold, David Andrews, Irma Fuego, Jennifer M Dan, Alba Grifoni, Daniela Weiskopf, Florian Krammer, Shane Crotty, Michael E Hoffer, Savita G Pahwa, Alessandro SetteThe Journal Of Infectious Diseases2021-04-02
Targeting Biofilm of MDR by Phages Using a Catheter Model.Chani Rakov, Shira Ben Porat, Sivan Alkalay-Oren, Ortal Yerushalmy, Mohanad Abdalrhman, Niv Gronovich, Lina Huang, David Pride, Shunit Coppenhagen-Glazer, Ran Nir-Paz, Ronen HazanAntibiotics (Basel, Switzerland)2021-04-02
An Introduction to Next Generation Sequencing Bioinformatic Analysis in Gut Microbiome Studies.Bei Gao, Liang Chi, Yixin Zhu, Xiaochun Shi, Pengcheng Tu, Bing Li, Jun Yin, Nan Gao, Weishou Shen, Bernd SchnablBiomolecules2021-04-02
A Clinical-Stage Cysteine Protease Inhibitor blocks SARS-CoV-2 Infection of Human and Monkey Cells.Drake M Mellott, Chien-Te Tseng, Aleksandra Drelich, Pavla Fajtová, Bala C Chenna, Demetrios H Kostomiris, Jason Hsu, Jiyun Zhu, Zane W Taylor, Klaudia I Kocurek, Vivian Tat, Ardala Katzfuss, Linfeng Li, Miriam A Giardini, Danielle Skinner, Ken Hirata, Michael C Yoon, Sungjun Beck, Aaron F Carlin, Alex E Clark, Laura Beretta, Daniel Maneval, Vivian Hook, Felix Frueh, Brett L Hurst, Hong Wang, Frank M Raushel, Anthony J O'Donoghue, Jair Lage de Siqueira-Neto, Thomas D Meek, James H McKerrowACS Chemical Biology2021-03-31
Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States.Nicole L Washington, Karthik Gangavarapu, Mark Zeller, Alexandre Bolze, Elizabeth T Cirulli, Kelly M Schiabor Barrett, Brendan B Larsen, Catelyn Anderson, Simon White, Tyler Cassens, Sharoni Jacobs, Geraint Levan, Jason Nguyen, Jimmy M Ramirez, Charlotte Rivera-Garcia, Efren Sandoval, Xueqing Wang, David Wong, Emily Spencer, Refugio Robles-Sikisaka, Ezra Kurzban, Laura D Hughes, Xianding Deng, Candace Wang, Venice Servellita, Holly Valentine, Peter De Hoff, Phoebe Seaver, Shashank Sathe, Kimberly Gietzen, Brad Sickler, Jay Antico, Kelly Hoon, Jingtao Liu, Aaron Harding, Omid Bakhtar, Tracy Basler, Brett Austin, Duncan MacCannell, Magnus Isaksson, Phillip G Febbo, David Becker, Marc Laurent, Eric McDonald, Gene W Yeo, Rob Knight, Louise C Laurent, Eileen de Feo, Michael Worobey, Charles Y Chiu, Marc A Suchard, James T Lu, William Lee, Kristian G AndersenCell2021-03-30
Thousands of previously unknown phages discovered in whole-community human gut metagenomes.Sean Benler, Natalya Yutin, Dmitry Antipov, Mikhail Rayko, Sergey Shmakov, Ayal B Gussow, Pavel Pevzner, Eugene V KooninMicrobiome2021-03-29
Effects of processed meat and drinking water nitrate on oral and fecal microbial populations in a controlled feeding study.Rashmi Sinha, Ni Zhao, James J Goedert, Doratha A Byrd, Yunhu Wan, Xing Hua, Autumn G Hullings, Rob Knight, Simone van Breda, Karen Mathijs, Theo M de Kok, Mary H Ward, Environmental Research2021-03-27
The oncogene AAMDC links PI3K-AKT-mTOR signaling with metabolic reprograming in estrogen receptor-positive breast cancer.Emily Golden, Rabab Rashwan, Eleanor A Woodward, Agustin Sgro, Edina Wang, Anabel Sorolla, Charlene Waryah, Wan Jun Tie, Elisabet Cuyàs, Magdalena Ratajska, Iwona Kardaś, Piotr Kozlowski, Elizabeth K M Johnstone, Heng B See, Ciara Duffy, Jeremy Parry, Kim A Lagerborg, Piotr Czapiewski, Javier A Menendez, Adam Gorczyński, Bartosz Wasag, Kevin D G Pfleger, Christina Curtis, Bum-Kyu Lee, Jonghwan Kim, Joseph Cursons, Nathan J Pavlos, Wojciech Biernat, Mohit Jain, Andrew J Woo, Andrew Redfern, Pilar BlancafortNature Communications2021-03-26
The microbiome and human cancer.Gregory D Sepich-Poore, Laurence Zitvogel, Ravid Straussman, Jeff Hasty, Jennifer A Wargo, Rob KnightScience (New York, N.Y.)2021-03-26
Validity of 2020 vancomycin consensus recommendations and further guidance for practical application.Michael J Rybak, Jennifer Le, Thomas P Lodise, Donald P Levine, John S Bradley, Catherine Liu, Bruce A Mueller, Manjunath P Pai, Annie-Wong Beringer, Keith A Rodvold, Holly D MaplesAmerican Journal Of Health-system Pharmacy : AJHP : Official Journal Of The American Society Of Health-System Pharmacists2021-03-26
Comparison of Two Approaches for the Metataxonomic Analysis of the Human Milk Microbiome.Lorena Ruiz, Claudio Alba, Cristina García-Carral, Esther A Jiménez, Kimberly A Lackey, Michelle K McGuire, Courtney L Meehan, James Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, Debela Gindola K, Gloria E Otoo, Rossina G Pareja, Lars Bode, Mark A McGuire, Janet E Williams, Juan M RodríguezFrontiers In Cellular And Infection Microbiology2021-03-25
Association of Loneliness and Wisdom With Gut Microbial Diversity and Composition: An Exploratory Study.Tanya T Nguyen, Xinlian Zhang, Tsung-Chin Wu, Jinyuan Liu, Collin Le, Xin M Tu, Rob Knight, Dilip V JesteFrontiers In Psychiatry2021-03-25
Tandem Fluorescence Measurements of Organic Matter and Bacteria Released in Sea Spray Aerosols.Mitchell V Santander, Brock A Mitts, Matthew A Pendergraft, Julie Dinasquet, Christopher Lee, Alexia N Moore, Lucia B Cancelada, Ke'La A Kimble, Francesca Malfatti, Kimberly A PratherEnvironmental Science & Technology2021-03-23
Renal and non-renal response of ABC and SLC transporters in chronic kidney disease.Adriana M Torres, Ankur V Dnyanmote, Jeffry C Granados, Sanjay K NigamExpert Opinion On Drug Metabolism & Toxicology2021-03-22
Coordinate regulation of systemic and kidney tryptophan metabolism by the drug transporters OAT1 and OAT3.Jeffry C Granados, Anne Richelle, Jahir M Gutierrez, Patrick Zhang, Xinlian Zhang, Vibha Bhatnagar, Nathan E Lewis, Sanjay K NigamThe Journal Of Biological Chemistry2021-03-21
Driving to Safety: CRISPR-Based Genetic Approaches to Reducing Antibiotic Resistance.Ethan Bier, Victor NizetTrends In Genetics : TIG2021-03-18
Author Correction: Gut microbiome pattern reflects healthy ageing and predicts survival in humans.Tomasz Wilmanski, Christian Diener, Noa Rappaport, Sushmita Patwardhan, Jack Wiedrick, Jodi Lapidus, John C Earls, Anat Zimmer, Gustavo Glusman, Max Robinson, James T Yurkovich, Deborah M Kado, Jane A Cauley, Joseph Zmuda, Nancy E Lane, Andrew T Magis, Jennifer C Lovejoy, Leroy Hood, Sean M Gibbons, Eric S Orwoll, Nathan D PriceNature Metabolism2021-03-18
EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets.Kalen Cantrell, Marcus W Fedarko, Gibraan Rahman, Daniel McDonald, Yimeng Yang, Thant Zaw, Antonio Gonzalez, Stefan Janssen, Mehrbod Estaki, Niina Haiminen, Kristen L Beck, Qiyun Zhu, Erfan Sayyari, James T Morton, George Armstrong, Anupriya Tripathi, Julia M Gauglitz, Clarisse Marotz, Nathaniel L Matteson, Cameron Martino, Jon G Sanders, Anna Paola Carrieri, Se Jin Song, Austin D Swafford, Pieter C Dorrestein, Kristian G Andersen, Laxmi Parida, Ho-Cheol Kim, Yoshiki Vázquez-Baeza, Rob KnightMSystems2021-03-16
A Cyanobacterial Component Required for Pilus Biogenesis Affects the Exoproteome.Yevgeni Yegorov, Eleonora Sendersky, Shaul Zilberman, Elad Nagar, Hiba Waldman Ben-Asher, Eyal Shimoni, Ryan Simkovsky, Susan S Golden, Andy LiWang, Rakefet SchwarzMBio2021-03-16
SARS-CoV-2 Screening Among Symptom-Free Healthcare Workers.Ryan T Demmer, Angela K Ulrich, Talia D Wiggen, Ali Strickland, Brianna M Naumchik, Shalini Kulasingam, Steven D Stovitz, Clarisse Marotz, Pedro Belda-Ferre, Greg Humphrey, Peter De Hoff, Louise Laurent, Susan Kline, Rob KnightInfection Control And Hospital Epidemiology2021-03-12
Pharmacokinetics and Safety of Single-dose Tedizolid Phosphate in Children 2 to <12 Years of Age.Antonio C Arrieta, Jocelyn Y Ang, Claudia Espinosa, Oleksandr Fofanov, Camilla Tøndel, Margaret Z Chou, Carisa S De Anda, Jason Y Kim, Dan Li, Philip Sabato, Pamela S Sears, John S BradleyThe Pediatric Infectious Disease Journal2021-03-12
COVID-19 and older adults with bipolar disorder: Problems and solutions.Osvaldo P Almeida, Esther Jimenez, Soham Rej, Lisa Eyler, Martha Sajatovic, Annemiek DolsBipolar Disorders2021-03-12
Cardiac Rehab in the COVID Era and Beyond: mHealth and Other Novel Opportunities.Elizabeth Epstein, Neeja Patel, Kathryn Maysent, Pam R TaubCurrent Cardiology Reports2021-03-11
Dietary factors, gut microbiota, and serum trimethylamine-N-oxide associated with cardiovascular disease in the Hispanic Community Health Study/Study of Latinos.Zhendong Mei, Guo-Chong Chen, Zheng Wang, Mykhaylo Usyk, Bing Yu, Yoshiki Vazquez Baeza, Greg Humphrey, Rodolfo Salido Benitez, Jun Li, Jessica S Williams-Nguyen, Martha L Daviglus, Lifang Hou, Jianwen Cai, Yan Zheng, Rob Knight, Robert D Burk, Eric Boerwinkle, Robert C Kaplan, Qibin QiThe American Journal Of Clinical Nutrition2021-03-11
Conjugation to Enterobactin and Salmochelin S4 Enhances the Antimicrobial Activity and Selectivity of β-Lactam Antibiotics against Nontyphoidal .Artur Sargun, Martina Sassone-Corsi, Tengfei Zheng, Manuela Raffatellu, Elizabeth M NolanACS Infectious Diseases2021-03-10
Exploring the Composition and Functions of Plastic Microbiome Using Whole-Genome Sequencing.Geetika Bhagwat, Qiyun Zhu, Wayne O'Connor, Suresh Subashchandrabose, Ian Grainge, Rob Knight, Thava PalanisamiEnvironmental Science & Technology2021-03-09
Staphylococcus aureus Enters Hair Follicles Using Triacylglycerol Lipases Preserved through the Genus Staphylococcus.Kouki Nakamura, Michael R Williams, Jakub M Kwiecinski, Alexander R Horswill, Richard L GalloThe Journal Of Investigative Dermatology2021-03-09
Disease-related mutations in PI3Kγ disrupt regulatory C-terminal dynamics and reveal a path to selective inhibitors.Manoj K Rathinaswamy, Zied Gaieb, Kaelin D Fleming, Chiara Borsari, Noah J Harris, Brandon E Moeller, Matthias P Wymann, Rommie E Amaro, John E BurkeELife2021-03-04
Proton pump inhibitor use status does not modify the microbiome signature for cirrhosis.Tae Gyu Oh, Susy M Kim, Annette R Atkins, Ruth T Yu, Michael Downes, Ronald M Evans, Rohit LoombaCell Metabolism2021-03-03
High-Throughput Wastewater SARS-CoV-2 Detection Enables Forecasting of Community Infection Dynamics in San Diego County.Smruthi Karthikeyan, Nancy Ronquillo, Pedro Belda-Ferre, Destiny Alvarado, Tara Javidi, Christopher A Longhurst, Rob KnightMSystems2021-03-02
Links between gut microbiome composition and fatty liver disease in a large population sample.Matti O Ruuskanen, Fredrik Åberg, Ville Männistö, Aki S Havulinna, Guillaume Méric, Yang Liu, Rohit Loomba, Yoshiki Vázquez-Baeza, Anupriya Tripathi, Liisa M Valsta, Michael Inouye, Pekka Jousilahti, Veikko Salomaa, Mohit Jain, Rob Knight, Leo Lahti, Teemu J NiiranenGut Microbes2021-03-02
Gut microbiota dysbiosis is associated with worse emotional states in HIV infection.Josué Pérez-Santiago, María J Marquine, Debralee Cookson, Rafael Giraud-Colón, Robert K Heaton, Igor Grant, Ronald J Ellis, Scott L Letendre, Scott N PetersonJournal Of Neurovirology2021-03-02
Bcl6-Mediated Transcriptional Regulation of Follicular Helper T cells (T).Jinyong Choi, Shane CrottyTrends In Immunology2021-03-01
Spatial variability of prokaryotic and viral abundances in the Kermadec and Atacama Trench regions.Clemens Schauberger, Mathias Middelboe, Morten Larsen, Logan M Peoples, Douglas H Bartlett, Finn Kirpekar, Ashley A Rowden, Frank Wenzhöfer, Bo Thamdrup, Ronnie N GludLimnology And Oceanography2021-02-28
Dissociation of DNA damage sensing by endoglycosidase HPSE.Alex Agelidis, Rahul K Suryawanshi, Chandrashekhar D Patil, Anaamika Campeau, David J Gonzalez, Deepak ShuklaIScience2021-02-27
Hitting the diagnostic sweet spot: Point-of-care SARS-CoV-2 salivary antigen testing with an off-the-shelf glucometer.Naveen K Singh, Partha Ray, Aaron F Carlin, Celestine Magallanes, Sydney C Morgan, Louise C Laurent, Eliah S Aronoff-Spencer, Drew A HallBiosensors & Bioelectronics2021-02-26
Associations of fecal microbial profiles with breast cancer and nonmalignant breast disease in the Ghana Breast Health Study.Doratha A Byrd, Emily Vogtmann, Zeni Wu, Yongli Han, Yunhu Wan, Joe-Nat Clegg-Lamptey, Joel Yarney, Beatrice Wiafe-Addai, Seth Wiafe, Baffour Awuah, Daniel Ansong, Kofi Nyarko, Autumn G Hullings, Xing Hua, Thomas Ahearn, James J Goedert, Jianxin Shi, Rob Knight, Jonine D Figueroa, Louise A Brinton, Montserrat Garcia-Closas, Rashmi SinhaInternational Journal Of Cancer2021-02-26
Identification of an N-acetylneuraminic acid-presenting bacteria isolated from a human microbiome.Zhen Han, Peter S Thuy-Boun, Wayne Pfeiffer, Vincent F Vartabedian, Ali Torkamani, John R Teijaro, Dennis W WolanScientific Reports2021-02-26
The Molecular Basis for Life in Extreme Environments.Nozomi Ando, Blanca Barquera, Douglas H Bartlett, Eric Boyd, Audrey A Burnim, Amanda S Byer, Daniel Colman, Richard E Gillilan, Martin Gruebele, George Makhatadze, Catherine A Royer, Everett Shock, A Joshua Wand, Maxwell B WatkinsAnnual Review Of Biophysics2021-02-26
Genomic relatedness and clinical significance of strains isolated from the urogenital tract of sexual partners.Carine R Mores, Travis K Price, Birte Wolff, Thomas Halverson, Roberto Limeira, Linda Brubaker, Elizabeth R Mueller, Catherine Putonti, Alan J WolfeMicrobial Genomics2021-02-25
Searching for host immune-microbiome mechanisms in obsessive-compulsive disorder: A narrative literature review and future directions.Emily A Troyer, Jordan N Kohn, Gertrude Ecklu-Mensah, Gajender Aleti, David R Rosenberg, Suzi HongNeuroscience And Biobehavioral Reviews2021-02-24
The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection.Fatemeh Askarian, Satoshi Uchiyama, Helen Masson, Henrik Vinther Sørensen, Ole Golten, Anne Cathrine Bunæs, Sophanit Mekasha, Åsmund Kjendseth Røhr, Eirik Kommedal, Judith Anita Ludviksen, Magnus Ø Arntzen, Benjamin Schmidt, Raymond H Zurich, Nina M van Sorge, Vincent G H Eijsink, Ute Krengel, Tom Eirik Mollnes, Nathan E Lewis, Victor Nizet, Gustav Vaaje-KolstadNature Communications2021-02-23
Intestinal α1-2-Fucosylation Contributes to Obesity and Steatohepatitis in Mice.Rongrong Zhou, Cristina Llorente, Jinling Cao, Livia S Zaramela, Suling Zeng, Bei Gao, Shang-Zhen Li, Ryan D Welch, Feng-Qing Huang, Lian-Wen Qi, Chuyue Pan, Yan Huang, Pengchen Zhou, Iris Beussen, Ying Zhang, Gregory Bryam, Oliver Fiehn, Lirui Wang, E-Hu Liu, Ruth T Yu, Michael Downes, Ronald M Evans, Karrie Goglin, Derrick E Fouts, David A Brenner, Lars Bode, Xuegong Fan, Karsten Zengler, Bernd SchnablCellular And Molecular Gastroenterology And Hepatology2021-02-22
Development of a human skin commensal microbe for bacteriotherapy of atopic dermatitis and use in a phase 1 randomized clinical trial.Teruaki Nakatsuji, Tissa R Hata, Yun Tong, Joyce Y Cheng, Faiza Shafiq, Anna M Butcher, Secilia S Salem, Samantha L Brinton, Amanda K Rudman Spergel, Keli Johnson, Brett Jepson, Agustin Calatroni, Gloria David, Marco Ramirez-Gama, Patricia Taylor, Donald Y M Leung, Richard L GalloNature Medicine2021-02-22
RAMIC: Design of a randomized, double-blind, placebo-controlled trial to evaluate the efficacy of ramipril in patients with COVID-19.Veeral Ajmera, Wesley K Thompson, Davey M Smith, Atul Malhotra, Ravindra L Mehta, Vaishal Tolia, Jeffrey Yin, Krishna Sriram, Paul A Insel, Summer Collier, Lisa Richards, Rohit LoombaContemporary Clinical Trials2021-02-22
Carbohydrates great and small, from dietary fiber to sialic acids: How glycans influence the gut microbiome and affect human health.Joanna K Coker, Oriane Moyne, Dmitry A Rodionov, Karsten ZenglerGut Microbes2021-02-22
Antimicrobial prescribing for treatment of serious infections caused by Staphylococcus aureus and methicillin-resistant Staphylococcus aureus in pediatrics: an expert review.Sean N Avedissian, Nathanial J Rhodes, Christopher L Shaffer, Lan Tran, John S Bradley, Jennifer LeExpert Review Of Anti-infective Therapy2021-02-21
Open Science Resources for the Mass Spectrometry-Based Analysis of SARS-CoV-2.Wout Bittremieux, Charlotte Adams, Kris Laukens, Pieter C Dorrestein, Nuno BandeiraJournal Of Proteome Research2021-02-19
Sensitivity of the mangrove-estuarine microbial community to aquaculture effluent.Natalia G Erazo, Jeff S BowmanIScience2021-02-18
Chemical interplay and complementary adaptative strategies toggle bacterial antagonism and co-existence.Carlos Molina-Santiago, David Vela-Corcía, Daniel Petras, Luis Díaz-Martínez, Alicia Isabel Pérez-Lorente, Sara Sopeña-Torres, John Pearson, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein, Antonio de Vicente, Diego RomeroCell Reports2021-02-18
Gut microbiome pattern reflects healthy ageing and predicts survival in humans.Tomasz Wilmanski, Christian Diener, Noa Rappaport, Sushmita Patwardhan, Jack Wiedrick, Jodi Lapidus, John C Earls, Anat Zimmer, Gustavo Glusman, Max Robinson, James T Yurkovich, Deborah M Kado, Jane A Cauley, Joseph Zmuda, Nancy E Lane, Andrew T Magis, Jennifer C Lovejoy, Leroy Hood, Sean M Gibbons, Eric S Orwoll, Nathan D PriceNature Metabolism2021-02-18
A community resource for paired genomic and metabolomic data mining.Michelle A Schorn, Stefan Verhoeven, Lars Ridder, Florian Huber, Deepa D Acharya, Alexander A Aksenov, Gajender Aleti, Jamshid Amiri Moghaddam, Allegra T Aron, Saefuddin Aziz, Anelize Bauermeister, Katherine D Bauman, Martin Baunach, Christine Beemelmanns, J Michael Beman, María Victoria Berlanga-Clavero, Alex A Blacutt, Helge B Bode, Anne Boullie, Asker Brejnrod, Tim S Bugni, Alexandra Calteau, Liu Cao, Víctor J Carrión, Raquel Castelo-Branco, Shaurya Chanana, Alexander B Chase, Marc G Chevrette, Leticia V Costa-Lotufo, Jason M Crawford, Cameron R Currie, Bart Cuypers, Tam Dang, Tristan de Rond, Alyssa M Demko, Elke Dittmann, Chao Du, Christopher Drozd, Jean-Claude Dujardin, Rachel J Dutton, Anna Edlund, David P Fewer, Neha Garg, Julia M Gauglitz, Emily C Gentry, Lena Gerwick, Evgenia Glukhov, Harald Gross, Muriel Gugger, Dulce G Guillén Matus, Eric J N Helfrich, Benjamin-Florian Hempel, Jae-Seoun Hur, Marianna Iorio, Paul R Jensen, Kyo Bin Kang, Leonard Kaysser, Neil L Kelleher, Chung Sub Kim, Ki Hyun Kim, Irina Koester, Gabriele M König, Tiago Leao, Seoung Rak Lee, Yi-Yuan Lee, Xuanji Li, Jessica C Little, Katherine N Maloney, Daniel Männle, Christian Martin H, Andrew C McAvoy, Willam W Metcalf, Hosein Mohimani, Carlos Molina-Santiago, Bradley S Moore, Michael W Mullowney, Mitchell Muskat, Louis-Félix Nothias, Ellis C O'Neill, Elizabeth I Parkinson, Daniel Petras, Jörn Piel, Emily C Pierce, Karine Pires, Raphael Reher, Diego Romero, M Caroline Roper, Michael Rust, Hamada Saad, Carmen Saenz, Laura M Sanchez, Søren Johannes Sørensen, Margherita Sosio, Roderich D Süssmuth, Douglas Sweeney, Kapil Tahlan, Regan J Thomson, Nicholas J Tobias, Amaro E Trindade-Silva, Gilles P van Wezel, Mingxun Wang, Kelly C Weldon, Fan Zhang, Nadine Ziemert, Katherine R Duncan, Max Crüsemann, Simon Rogers, Pieter C Dorrestein, Marnix H Medema, Justin J J van der HooftNature Chemical Biology2021-02-17
Quantifying Live Microbial Load in Human Saliva Samples over Time Reveals Stable Composition and Dynamic Load.Clarisse Marotz, James T Morton, Perris Navarro, Joanna Coker, Pedro Belda-Ferre, Rob Knight, Karsten ZenglerMSystems2021-02-16
Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus.St Elmo Wilken, Jonathan M Monk, Patrick A Leggieri, Christopher E Lawson, Thomas S Lankiewicz, Susanna Seppälä, Chris G Daum, Jerry Jenkins, Anna M Lipzen, Stephen J Mondo, Kerrie W Barry, Igor V Grigoriev, John K Henske, Michael K Theodorou, Bernhard O Palsson, Linda R Petzold, Michelle A O'MalleyMSystems2021-02-16
Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features.Natalya Yutin, Sean Benler, Sergei A Shmakov, Yuri I Wolf, Igor Tolstoy, Mike Rayko, Dmitry Antipov, Pavel A Pevzner, Eugene V KooninNature Communications2021-02-16
Tiny Earth: A Big Idea for STEM Education and Antibiotic Discovery.Amanda Hurley, Marc G Chevrette, Deepa D Acharya, Gabriel L Lozano, Manuel Garavito, Jen Heinritz, Luis Balderrama, Mara Beebe, Martel L DenHartog, Kamiyah Corinaldi, Renee Engels, Alyssa Gutierrez, Orli Jona, Josephine H I Putnam, Brody Rhodes, Tiffany Tsang, Simon Hernandez, Carol Bascom-Slack, Jessamina E Blum, Paul A Price, Debra Davis, Joanna Klein, Joshua Pultorak, Nora L Sullivan, Nigel J Mouncey, Pieter C Dorrestein, Sarah Miller, Nichole A Broderick, Jo HandelsmanMBio2021-02-16
Fungi-Bacteria Correlation in Alcoholic Hepatitis Patients.Bei Gao, Xinlian Zhang, Bernd SchnablToxins2021-02-14
Seroprevalence of antibodies to SARS-CoV-2 in healthcare workers: a cross-sectional study.Joseph E Ebinger, Gregory J Botwin, Christine M Albert, Mona Alotaibi, Moshe Arditi, Anders H Berg, Aleksandra Binek, Patrick Botting, Justyna Fert-Bober, Jane C Figueiredo, Jonathan D Grein, Wohaib Hasan, Mir Henglin, Shehnaz K Hussain, Mohit Jain, Sandy Joung, Michael Karin, Elizabeth H Kim, Dalin Li, Yunxian Liu, Eric Luong, Dermot P B McGovern, Akil Merchant, Noah Merin, Peggy B Miles, Margo Minissian, Trevor Trung Nguyen, Koen Raedschelders, Mohamad A Rashid, Celine E Riera, Richard V Riggs, Sonia Sharma, Sarah Sternbach, Nancy Sun, Warren G Tourtellotte, Jennifer E Van Eyk, Kimia Sobhani, Jonathan G Braun, Susan ChengBMJ Open2021-02-12
Revealing Tissue-Specific SARS-CoV-2 Infection and Host Responses using Human Stem Cell-Derived Lung and Cerebral Organoids.Shashi Kant Tiwari, Shaobo Wang, Davey Smith, Aaron F Carlin, Tariq M RanaStem Cell Reports2021-02-12
Multipathogen Analysis of IgA and IgG Antigen Specificity for Selected Pathogens in Milk Produced by Women From Diverse Geographical Regions: The INSPIRE Study.Michelle K McGuire, Arlo Z Randall, Antti E Seppo, Kirsi M Järvinen, Courtney L Meehan, Debela Gindola, Janet E Williams, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, James A Foster, Gloria E Otoo, Juan M Rodríguez, Rossina G Pareja, Lars Bode, Mark A McGuire, Joseph J CampoFrontiers In Immunology2021-02-11
Paresthesia Predicts Increased Risk of Distal Neuropathic Pain in Older People with HIV-Associated Sensory Polyneuropathy.Monica M Diaz, John R Keltner, Alan N Simmons, Donald Franklin, Raeanne C Moore, David Clifford, Ann C Collier, Benjamin B Gelman, Ph D Christina Marra, J Allen McCutchan, Susan Morgello, Ned Sacktor, Brookie Best, Christine Fennema Notestine, Sara Gianella Weibel, Igor Grant, Thomas D Marcotte, Florin Vaida, Scott Letendre, Robert Heaton, Ronald J EllisPain Medicine (Malden, Mass.)2021-02-11
Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly.Mahul Chakraborty, Arunachalam Ramaiah, Adriana Adolfi, Paige Halas, Bhagyashree Kaduskar, Luna Thanh Ngo, Suvratha Jayaprasad, Kiran Paul, Saurabh Whadgar, Subhashini Srinivasan, Suresh Subramani, Ethan Bier, Anthony A James, J J EmersonBMC Biology2021-02-10
IonoBiology: The functional dynamics of the intracellular metallome, with lessons from bacteria.Leticia Galera-Laporta, Colin J Comerci, Jordi Garcia-Ojalvo, Gürol M SüelCell Systems2021-02-10
Human Milk-Fed Piglets Have a Distinct Small Intestine and Circulatory Metabolome Profile Relative to That of Milk Formula-Fed Piglets.Fernanda Rosa, Katelin S Matazel, Ahmed A Elolimy, Sean H Adams, Anne Bowlin, Keith D Williams, Lars Bode, Laxmi YeruvaMSystems2021-02-09
Functional Restoration of Bacteriomes and Viromes by Fecal Microbiota Transplantation.Kosuke Fujimoto, Yasumasa Kimura, Jessica R Allegretti, Mako Yamamoto, Yao-Zhong Zhang, Kotoe Katayama, Georg Tremmel, Yunosuke Kawaguchi, Masaki Shimohigoshi, Tetsuya Hayashi, Miho Uematsu, Kiyoshi Yamaguchi, Yoichi Furukawa, Yutaka Akiyama, Rui Yamaguchi, Sheila E Crowe, Peter B Ernst, Satoru Miyano, Hiroshi Kiyono, Seiya Imoto, Satoshi UematsuGastroenterology2021-02-09
Emergence of an early SARS-CoV-2 epidemic in the United States.Mark Zeller, Karthik Gangavarapu, Catelyn Anderson, Allison R Smither, John A Vanchiere, Rebecca Rose, Daniel J Snyder, Gytis Dudas, Alexander Watts, Nathaniel L Matteson, Refugio Robles-Sikisaka, Maximilian Marshall, Amy K Feehan, Gilberto Sabino-Santos, Antoinette R Bell-Kareem, Laura D Hughes, Manar Alkuzweny, Patricia Snarski, Julia Garcia-Diaz, Rona S Scott, Lilia I Melnik, Raphaälle Klitting, Michelle McGraw, Pedro Belda-Ferre, Peter DeHoff, Shashank Sathe, Clarisse Marotz, Nathan Grubaugh, David J Nolan, Arnaud C Drouin, Kaylynn J Genemaras, Karissa Chao, Sarah Topol, Emily Spencer, Laura Nicholson, Stefan Aigner, Gene W Yeo, Lauge Farnaes, Charlotte A Hobbs, Louise C Laurent, Rob Knight, Emma B Hodcroft, Kamran Khan, Dahlene N Fusco, Vaughn S Cooper, Phillipe Lemey, Lauren Gardner, Susanna L Lamers, Jeremy P Kamil, Robert F Garry, Marc A Suchard, Kristian G AndersenMedRxiv : The Preprint Server For Health Sciences2021-02-08
Whole genome sequencing identifies novel genetic mutations in patients with eczema herpeticum.Lianghua Bin, Claire Malley, Patricia Taylor, Meher Preethi Boorgula, Sameer Chavan, Michelle Daya, Malaika Mathias, Gautam Shankar, Nicholas Rafaels, Candelaria Vergara, Joseph Potee, Monica Campbell, Jon M Hanifin, Eric Simpson, Lynda C Schneider, Richard L Gallo, Tissa Hata, Amy S Paller, Anna De Benedetto, Lisa A Beck, Peck Y Ong, Emma Guttman-Yassky, Brittany Richers, David Baraghoshi, Ingo Ruczinski, Kathleen C Barnes, Donald Y M Leung, Rasika A MathiasAllergy2021-02-06
The sum is greater than the parts: exploiting microbial communities to achieve complex functions.Livia S Zaramela, Oriane Moyne, Manish Kumar, Cristal Zuniga, Juan D Tibocha-Bonilla, Karsten ZenglerCurrent Opinion In Biotechnology2021-02-06
Change in Fibrosis 4 Index as Predictor of High Risk of Incident Hepatocellular Carcinoma After Eradication of Hepatitis C Virus.Nobuharu Tamaki, Masayuki Kurosaki, Yutaka Yasui, Nami Mori, Keiji Tsuji, Chitomi Hasebe, Koji Joko, Takehiro Akahane, Koichiro Furuta, Haruhiko Kobashi, Hiroyuki Kimura, Hitoshi Yagisawa, Hiroyuki Marusawa, Masahiko Kondo, Yuji Kojima, Hideo Yoshida, Yasushi Uchida, Rohit Loomba, Namiki IzumiClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2021-02-05
Building biorepositories in the midst of a pandemic.Jennifer A Croker, Robin Patel, Kenneth S Campbell, Marietta Barton-Baxter, Shannon Wallet, Gary S Firestein, Robert P Kimberly, Olivier ElementoJournal Of Clinical And Translational Science2021-02-05
Breastfeed or be vaccinated-an unreasonable default recommendation.Anne Merewood, Lars Bode, Riccardo Davanzo, Rafael Perez-EscamillaLancet (London, England)2021-02-04
Current state of athalassohaline deep-sea hypersaline anoxic basin research-recommendations for future work and relevance to astrobiology.Luke A Fisher, Alexandra Pontefract, Sanjoy M Som, Christopher E Carr, Benjamin Klempay, Britney E Schmidt, Jeff S Bowman, Douglas H BartlettEnvironmental Microbiology2021-02-04
Moving Beyond the Momentum: Innovative Approaches to Clinical Trial Implementation.Cathy Eng, Emerson Y Chen, Jane Rogers, Mark Lewis, Jonathan Strosberg, Ramya Thota, Smitha Krishnamurthi, Paul Oberstein, Rang Govindarajan, Gary Buchschacher, Sandip Patel, Davendra Sohal, Taymeyah Al-Toubah, Philip Philip, Arvind Dasari, Hagan Kennecke, Stacey SteinJCO Oncology Practice2021-02-03
Decade-scale stability and change in a marine bivalve microbiome.Alexander T Neu, Ian V Hughes, Eric E Allen, Kaustuv RoyMolecular Ecology2021-02-02
Apurinic/Apyrimidinic Endonuclease 1 Restricts the Internalization of Bacteria Into Human Intestinal Epithelial Cells Through the Inhibition of Rac1.Gerco den Hartog, Lindsay D Butcher, Amber L Ablack, Laura A Pace, Jailal N G Ablack, Richard Xiong, Soumita Das, Thaddeus S Stappenbeck, Lars Eckmann, Peter B Ernst, Sheila E CroweFrontiers In Immunology2021-02-02
Independent component analysis recovers consistent regulatory signals from disparate datasets.Anand V Sastry, Alyssa Hu, David Heckmann, Saugat Poudel, Erol Kavvas, Bernhard O PalssonPLoS Computational Biology2021-02-02
Microbiota control of maternal behavior regulates early postnatal growth of offspring.Yujung Michelle Lee, Andre Mu, Martina Wallace, Jivani M Gengatharan, Annalee J Furst, Lars Bode, Christian M Metallo, Janelle S AyresScience Advances2021-01-29
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities.Justin P Shaffer, Clarisse Marotz, Pedro Belda-Ferre, Cameron Martino, Stephen Wandro, Mehrbod Estaki, Rodolfo A Salido, Carolina S Carpenter, Livia S Zaramela, Jeremiah J Minich, MacKenzie Bryant, Karenina Sanders, Serena Fraraccio, Gail Ackermann, Gregory Humphrey, Austin D Swafford, Sandrine Miller-Montgomery, Rob KnightBioTechniques2021-01-29
Identifying COVID-19 Cases and Social Groups at High Risk of Transmission: A Strategy to Reduce Community Spread.Robert A Gunn, John Bellettiere, Richard S Garfein, Kanya C Long, Nancy J Binkin, Cheryl A M AndersonPublic Health Reports (Washington, D.C. : 1974)2021-01-28
First report on prevalence of SARS-CoV-2 infection among health-care workers in Nicaragua.Jorge A Huete-Pérez, Cristiana Cabezas-Robelo, Lucía Páiz-Medina, Carlos A Hernández-Álvarez, Carlos Quant-Durán, James H McKerrowPloS One2021-01-27
More than a Pore: Nonlytic Antimicrobial Functions of Complement and Bacterial Strategies for Evasion.Elisabet Bjanes, Victor NizetMicrobiology And Molecular Biology Reviews : MMBR2021-01-27
Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases.Alison Tarke, John Sidney, Conner K Kidd, Jennifer M Dan, Sydney I Ramirez, Esther Dawen Yu, Jose Mateus, Ricardo da Silva Antunes, Erin Moore, Paul Rubiro, Nils Methot, Elizabeth Phillips, Simon Mallal, April Frazier, Stephen A Rawlings, Jason A Greenbaum, Bjoern Peters, Davey M Smith, Shane Crotty, Daniela Weiskopf, Alba Grifoni, Alessandro SetteCell Reports. Medicine2021-01-26
Absence of CCR2 reduces spontaneous intestinal tumorigenesis in the Apc mouse model.Venkatakrishna Rao Jala, Sobha Rani Bodduluri, Sweta Ghosh, Zinal Chheda, Rajbir Singh, Michelle E Smith, Paula M Chilton, Christopher J Fleming, Steven Paul Mathis, Rajesh Kumar Sharma, Rob Knight, Jun Yan, Bodduluri HaribabuInternational Journal Of Cancer2021-01-26
Pangenome Analytics Reveal Two-Component Systems as Conserved Targets in ESKAPEE Pathogens.Akanksha Rajput, Yara Seif, Kumari Sonal Choudhary, Christopher Dalldorf, Saugat Poudel, Jonathan M Monk, Bernhard O PalssonMSystems2021-01-26
Asymmetrizing an icosahedral virus capsid by hierarchical assembly of subunits with designed asymmetry.Zhongchao Zhao, Joseph Che-Yen Wang, Mi Zhang, Nicholas A Lyktey, Martin F Jarrold, Stephen C Jacobson, Adam ZlotnickNature Communications2021-01-26
Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment.Jeremiah J Minich, Farhana Ali, Clarisse Marotz, Pedro Belda-Ferre, Leslie Chiang, Justin P Shaffer, Carolina S Carpenter, Daniel McDonald, Jack Gilbert, Sarah M Allard, Eric E Allen, Rob Knight, Daniel A Sweeney, Austin D SwaffordMicrobiome2021-01-22
Obesogenic Programming Effects during Lactation: A Narrative Review and Conceptual Model Focusing on Underlying Mechanisms and Promising Future Research Avenues.Junilla K Larsen, Lars BodeNutrients2021-01-21
Bacterial fitness landscapes stratify based on proteome allocation associated with discrete aero-types.Ke Chen, Amitesh Anand, Connor Olson, Troy E Sandberg, Ye Gao, Nathan Mih, Bernhard O PalssonPLoS Computational Biology2021-01-19
Exploring the Impact of Ketodeoxynonulosonic Acid in Host-Pathogen Interactions Using Uptake and Surface Display by Nontypeable Haemophilus influenzae.Sudeshna Saha, Alison Coady, Aniruddha Sasmal, Kunio Kawanishi, Biswa Choudhury, Hai Yu, Ricardo U Sorensen, Jaime Inostroza, Ian C Schoenhofen, Xi Chen, Anja Münster-Kühnel, Chihiro Sato, Ken Kitajima, Sanjay Ram, Victor Nizet, Ajit VarkiMBio2021-01-19
Large-scale association analyses identify host factors influencing human gut microbiome composition.Alexander Kurilshikov, Carolina Medina-Gomez, Rodrigo Bacigalupe, Djawad Radjabzadeh, Jun Wang, Ayse Demirkan, Caroline I Le Roy, Juan Antonio Raygoza Garay, Casey T Finnicum, Xingrong Liu, Daria V Zhernakova, Marc Jan Bonder, Tue H Hansen, Fabian Frost, Malte C Rühlemann, Williams Turpin, Jee-Young Moon, Han-Na Kim, Kreete Lüll, Elad Barkan, Shiraz A Shah, Myriam Fornage, Joanna Szopinska-Tokov, Zachary D Wallen, Dmitrii Borisevich, Lars Agreus, Anna Andreasson, Corinna Bang, Larbi Bedrani, Jordana T Bell, Hans Bisgaard, Michael Boehnke, Dorret I Boomsma, Robert D Burk, Annique Claringbould, Kenneth Croitoru, Gareth E Davies, Cornelia M van Duijn, Liesbeth Duijts, Gwen Falony, Jingyuan Fu, Adriaan van der Graaf, Torben Hansen, Georg Homuth, David A Hughes, Richard G Ijzerman, Matthew A Jackson, Vincent W V Jaddoe, Marie Joossens, Torben Jørgensen, Daniel Keszthelyi, Rob Knight, Markku Laakso, Matthias Laudes, Lenore J Launer, Wolfgang Lieb, Aldons J Lusis, Ad A M Masclee, Henriette A Moll, Zlatan Mujagic, Qi Qibin, Daphna Rothschild, Hocheol Shin, Søren J Sørensen, Claire J Steves, Jonathan Thorsen, Nicholas J Timpson, Raul Y Tito, Sara Vieira-Silva, Uwe Völker, Henry Völzke, Urmo Võsa, Kaitlin H Wade, Susanna Walter, Kyoko Watanabe, Stefan Weiss, Frank U Weiss, Omer Weissbrod, Harm-Jan Westra, Gonneke Willemsen, Haydeh Payami, Daisy M A E Jonkers, Alejandro Arias Vasquez, Eco J C de Geus, Katie A Meyer, Jakob Stokholm, Eran Segal, Elin Org, Cisca Wijmenga, Hyung-Lae Kim, Robert C Kaplan, Tim D Spector, Andre G Uitterlinden, Fernando Rivadeneira, Andre Franke, Markus M Lerch, Lude Franke, Serena Sanna, Mauro D'Amato, Oluf Pedersen, Andrew D Paterson, Robert Kraaij, Jeroen Raes, Alexandra ZhernakovaNature Genetics2021-01-18
Airborne Transmission of SARS-CoV-2: What We Know.Jonathan M Samet, Kimberly Prather, Georges Benjamin, Seema Lakdawala, John-Martin Lowe, Arthur Reingold, John Volckens, Linsey MarrClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2021-01-18
Microbiome Signatures in a Fast- and Slow-Progressing Gastric Cancer Murine Model and Their Contribution to Gastric Carcinogenesis.Prerna Bali, Joanna Coker, Ivonne Lozano-Pope, Karsten Zengler, Marygorret ObonyoMicroorganisms2021-01-17
Novel Models of Colonization and Disease Reveal Modest Contributions of M-Like (SCM) Protein.Ingrid Cornax, Jacob Zulk, Joshua Olson, Marcus Fulde, Victor Nizet, Kathryn A PatrasMicroorganisms2021-01-16
Differential T cell reactivity to seasonal coronaviruses and SARS-CoV-2 in community and health care workers.Ricardo da Silva Antunes, Suresh Pallikkuth, Erin Williams, Esther Dawen Yu, Jose Mateus, Lorenzo Quiambao, Eric Wang, Stephen A Rawlings, Daniel Stadlbauer, Kaijun Jiang, Fatima Amanat, David Arnold, David Andrews, Irma Fuego, Jennifer M Dan, Alba Grifoni, Daniela Weiskopf, Florian Krammer, Shane Crotty, Michael E Hoffer, Savita G Pahwa, Alessandro SetteMedRxiv : The Preprint Server For Health Sciences2021-01-15
New Developments in Microbiome in Alcohol-Associated and Nonalcoholic Fatty Liver Disease.Phillipp Hartmann, Bernd SchnablSeminars In Liver Disease2021-01-14
Enterobactin- and salmochelin-β-lactam conjugates induce cell morphologies consistent with inhibition of penicillin-binding proteins in uropathogenic CFT073.Artur Sargun, Timothy C Johnstone, Hui Zhi, Manuela Raffatellu, Elizabeth M NolanChemical Science2021-01-13
A Novel N4-Like Bacteriophage Isolated from a Wastewater Source in South India with Activity against Several Multidrug-Resistant Clinical Pseudomonas aeruginosa Isolates.Nitasha D Menon, Megha S Kumar, T G Satheesh Babu, Sucharita Bose, Gayathri Vijayakumar, Manasi Baswe, Meghna Chatterjee, Jovita Rowena D'Silva, Kavya Shetty, Jayalekshmi Haripriyan, Anil Kumar, Samitha Nair, Priyanka Somanath, Bipin G Nair, Victor Nizet, Geetha B KumarMSphere2021-01-13
Adaptive immunity to SARS-CoV-2 and COVID-19.Alessandro Sette, Shane CrottyCell2021-01-12
Early detection of tumor cells in bone marrow and peripheral blood in a fast‑progressing gastric cancer model.Prerna Bali, Ivonne Lozano-Pope, Collin Pachow, Marygorret ObonyoInternational Journal Of Oncology2021-01-12
Viral speciation through subcellular genetic isolation and virogenesis incompatibility.Vorrapon Chaikeeratisak, Erica A Birkholz, Amy M Prichard, MacKennon E Egan, Avani Mylvara, Poochit Nonejuie, Katrina T Nguyen, Joseph Sugie, Justin R Meyer, Joe PoglianoNature Communications2021-01-12
Exposure to Epstein Barr virus and cognitive functioning in individuals with schizophrenia.Faith Dickerson, Emily Katsafanas, Andrea Origoni, Amalia Squire, Sunil Khushalani, Theresa Newman, Kelly Rowe, Cassie Stallings, Christina L G Savage, Kevin Sweeney, Tanya T Nguyen, Alan Breier, Donald Goff, Glen Ford, Lorraine Jones-Brando, Robert YolkenSchizophrenia Research2021-01-12
High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing.Søren M Karst, Ryan M Ziels, Rasmus H Kirkegaard, Emil A Sørensen, Daniel McDonald, Qiyun Zhu, Rob Knight, Mads AlbertsenNature Methods2021-01-11
Gut Microbial Ecosystem in Parkinson Disease: New Clinicobiological Insights from Multi-Omics.Ai Huey Tan, Chun Wie Chong, Shen-Yang Lim, Ivan Kok Seng Yap, Cindy Shuan Ju Teh, Mun Fai Loke, Sze-Looi Song, Jiun Yan Tan, Ban Hong Ang, Yong Qi Tan, Mee Teck Kho, Jeff Bowman, Sanjiv Mahadeva, Hoi Sen Yong, Anthony E LangAnnals Of Neurology2021-01-11
HiDeF: identifying persistent structures in multiscale 'omics data.Fan Zheng, She Zhang, Christopher Churas, Dexter Pratt, Ivet Bahar, Trey IdekerGenome Biology2021-01-07
Immunological memory to SARS-CoV-2 assessed for up to 8 months after infection.Jennifer M Dan, Jose Mateus, Yu Kato, Kathryn M Hastie, Esther Dawen Yu, Caterina E Faliti, Alba Grifoni, Sydney I Ramirez, Sonya Haupt, April Frazier, Catherine Nakao, Vamseedhar Rayaprolu, Stephen A Rawlings, Bjoern Peters, Florian Krammer, Viviana Simon, Erica Ollmann Saphire, Davey M Smith, Daniela Weiskopf, Alessandro Sette, Shane CrottyScience (New York, N.Y.)2021-01-06
A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria.Tiago Leão, Mingxun Wang, Nathan Moss, Ricardo da Silva, Jon Sanders, Sergey Nurk, Alexey Gurevich, Gregory Humphrey, Raphael Reher, Qiyun Zhu, Pedro Belda-Ferre, Evgenia Glukhov, Syrena Whitner, Kelsey L Alexander, Robert Rex, Pavel Pevzner, Pieter C Dorrestein, Rob Knight, Nuno Bandeira, William H Gerwick, Lena GerwickMarine Drugs2021-01-06
Effects of Immunization With the Soil-Derived Bacterium on Stress Coping Behaviors and Cognitive Performance in a "Two Hit" Stressor Model.Christine L Foxx, Jared D Heinze, Antonio González, Fernando Vargas, Michael V Baratta, Ahmed I Elsayed, Jessica R Stewart, Kelsey M Loupy, Mathew R Arnold, M C Flux, Saydie A Sago, Philip H Siebler, Lauren N Milton, Margaret W Lieb, James E Hassell, David G Smith, Kyo A K Lee, Sandra A Appiah, Evan J Schaefer, Morgan Panitchpakdi, Nicole C Sikora, Kelly C Weldon, Christopher E Stamper, Dominic Schmidt, David A Duggan, Yosan M Mengesha, Mikale Ogbaselassie, Kadi T Nguyen, Chloe A Gates, K'loni Schnabel, Linh Tran, Joslynn D Jones, Martha H Vitaterna, Fred W Turek, Monika Fleshner, Pieter C Dorrestein, Rob Knight, Kenneth P Wright, Christopher A LowryFrontiers In Physiology2021-01-05
Microbiome for Mars: surveying microbiome connections to healthcare with implications for long-duration human spaceflight, virtual workshop, July 13, 2020.Michael LaPelusa, Dorit Donoviel, Sergio E Branzini, Paul E Carlson, Stephanie Culler, Amrita K Cheema, Rima Kaddurah-Daouk, Denise Kelly, Isabelle de Cremoux, Rob Knight, Rosa Krajmalnik-Brown, Stephen L Mayo, Sarkis K Mazmanian, Emeran A Mayer, Joseph F Petrosino, Keith GarrisonMicrobiome2021-01-04
Reply to: Examining microbe-metabolite correlations by linear methods.James T Morton, Daniel McDonald, Alexander A Aksenov, Louis Felix Nothias, James R Foulds, Robert A Quinn, Michelle H Badri, Tami L Swenson, Marc W Van Goethem, Trent R Northen, Yoshiki Vazquez-Baeza, Mingxun Wang, Nicholas A Bokulich, Aaron Watters, Se Jin Song, Richard Bonneau, Pieter C Dorrestein, Rob KnightNature Methods2021-01-04
Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater.Daniel Petras, Jeremiah J Minich, Lucia B Cancelada, Ralph R Torres, Emily Kunselman, Mingxun Wang, Margot E White, Eric E Allen, Kimberly A Prather, Lihini I Aluwihare, Pieter C DorresteinChemosphere2021-01-02
COVID-19 and Cancer Comorbidity: Therapeutic Opportunities and Challenges.Anup S Pathania, Philip Prathipati, Bakrudeen Aa Abdul, Srinivas Chava, Santharam S Katta, Subash C Gupta, Pandu R Gangula, Manoj K Pandey, Donald L Durden, Siddappa N Byrareddy, Kishore B ChallagundlaTheranostics2021-01-01
COVID19 - Computational Chemists Meet the Moment.Adrian J Mulholland, Rommie E AmaroJournal Of Chemical Information And Modeling2020-12-31
Pathophysiology of Inflammatory Bowel Diseases.John T ChangThe New England Journal Of Medicine2020-12-31
Genomics Links Inflammation with Neurocognitive Impairment in Children Living with Human Immunodeficiency Virus type-1.Pratima Rawat, Sean S Brummel, Kumud K Singh, Jihoon Kim, Kelly A Frazer, Sharon Nichols, George R Seage Iii, Paige L Williams, Russell B Van Dyke, Olivier Harismendy, Rodney N Trout, Stephen A Spector, The Journal Of Infectious Diseases2020-12-29
SARS-CoV-2 escape from a highly neutralizing COVID-19 convalescent plasma.Emanuele Andreano, Giulia Piccini, Danilo Licastro, Lorenzo Casalino, Nicole V Johnson, Ida Paciello, Simeone Dal Monego, Elisa Pantano, Noemi Manganaro, Alessandro Manenti, Rachele Manna, Elisa Casa, Inesa Hyseni, Linda Benincasa, Emanuele Montomoli, Rommie E Amaro, Jason S McLellan, Rino RappuoliBioRxiv : The Preprint Server For Biology2020-12-28
Data-driven noise modeling of digital DNA melting analysis enables prediction of sequence discriminating power.Lennart Langouche, April Aralar, Mridu Sinha, Shelley M Lawrence, Stephanie I Fraley, Todd P ColemanBioinformatics (Oxford, England)2020-12-23
Screening and characterization of polyhydroxyalkanoate granules, and phylogenetic analysis of polyhydroxyalkanoate synthase gene PhaC in cyanobacteria.Karl Hong, Joris Beld, Tony D Davis, Michael D Burkart, Brian PalenikJournal Of Phycology2020-12-22
Natural Products with Potential to Treat RNA Virus Pathogens Including SARS-CoV-2.Mitchell P Christy, Yoshinori Uekusa, Lena Gerwick, William H GerwickJournal Of Natural Products2020-12-22
Application of the Relationship-Based Model to Engagement for Field Trials of Genetically Engineered Malaria Vectors.Ana Kormos, Gregory C Lanzaro, Ethan Bier, George Dimopoulos, John M Marshall, João Pinto, Adionilde Aguiar Dos Santos, Affane Bacar, Herodes Sousa Pontes Sacramento Rompão, Anthony A JamesThe American Journal Of Tropical Medicine And Hygiene2020-12-21
Immunological memory to SARS-CoV-2 assessed for up to eight months after infection.Jennifer M Dan, Jose Mateus, Yu Kato, Kathryn M Hastie, Esther Dawen Yu, Caterina E Faliti, Alba Grifoni, Sydney I Ramirez, Sonya Haupt, April Frazier, Catherine Nakao, Vamseedhar Rayaprolu, Stephen A Rawlings, Bjoern Peters, Florian Krammer, Viviana Simon, Erica Ollmann Saphire, Davey M Smith, Daniela Weiskopf, Alessandro Sette, Shane CrottyBioRxiv : The Preprint Server For Biology2020-12-18
Coinfection and infection duration shape how pathogens affect the African buffalo gut microbiota.Kate A Sabey, Se Jin Song, Anna Jolles, Rob Knight, Vanessa O EzenwaThe ISME Journal2020-12-17
Harnessing Iron Acquisition Machinery to Target Enterobacteriaceae.Artur Sargun, Romana R Gerner, Manuela Raffatellu, Elizabeth M NolanThe Journal Of Infectious Diseases2020-12-17
Maternal diet alters human milk oligosaccharide composition with implications for the milk metagenome.Maxim D Seferovic, Mahmoud Mohammad, Ryan M Pace, Melinda Engevik, James Versalovic, Lars Bode, Morey Haymond, Kjersti M AagaardScientific Reports2020-12-16
Human milk oligosaccharide DSLNT and gut microbiome in preterm infants predicts necrotising enterocolitis.Andrea C Masi, Nicholas D Embleton, Christopher A Lamb, Gregory Young, Claire L Granger, Julia Najera, Daniel P Smith, Kristi L Hoffman, Joseph F Petrosino, Lars Bode, Janet E Berrington, Christopher J StewartGut2020-12-16
Genome-scale determination of 5´ and 3´ boundaries of RNA transcripts in Streptomyces genomes.Yongjae Lee, Namil Lee, Soonkyu Hwang, Woori Kim, Yujin Jeong, Suhyung Cho, Bernhard O Palsson, Byung-Kwan ChoScientific Data2020-12-15
Gut microbiome directs hepatocytes to recruit MDSC and promote cholangiocarcinoma.Qianfei Zhang, Chi Ma, Yi Duan, Bernd Heinrich, Umberto Rosato, Laurence P Diggs, Lichun Ma, Soumen Roy, Qiong Fu, Zachary J Brown, Simon Wabitsch, Vishal Thovarai, Jianyang Fu, Dechun Feng, Benjamin Ruf, Linda L Cui, Varun Subramanyam, Karen M Frank, Sophie Wang, David E Kleiner, Thomas Ritz, Christian Rupp, Bin Gao, Thomas Longerich, Alexander Kroemer, Xin Wei Wang, Mathuros Ruchirawat, Firouzeh Korangy, Bernd Schnabl, Giorgio Trinchieri, Tim F GretenCancer Discovery2020-12-15
Gut microbiome, liver immunology, and liver diseases.Rui Wang, Ruqi Tang, Bo Li, Xiong Ma, Bernd Schnabl, Herbert TilgCellular & Molecular Immunology2020-12-14
The Commensal Microbe Veillonella as a Marker for Response to an FGF19 Analog in NASH.Rohit Loomba, Lei Ling, Duy M Dinh, Alex M DePaoli, Hsiao D Lieu, Stephen A Harrison, Arun J SanyalHepatology (Baltimore, Md.)2020-12-11
Machine learning uncovers independently regulated modules in the Bacillus subtilis transcriptome.Kevin Rychel, Anand V Sastry, Bernhard O PalssonNature Communications2020-12-11
Gut dysbiosis as a driver in alcohol-induced liver injury.Bradley Fairfield, Bernd SchnablJHEP Reports : Innovation In Hepatology2020-12-10
Effects of Extended Postmortem Interval on Microbial Communities in Organs of the Human Cadaver.Holly Lutz, Alexandria Vangelatos, Neil Gottel, Antonio Osculati, Silvia Visona, Sheree J Finley, Jack A Gilbert, Gulnaz T JavanFrontiers In Microbiology2020-12-08
Neonatal Diet Impacts the Large Intestine Luminal Metabolome at Weaning and Post-Weaning in Piglets Fed Formula or Human Milk.Fernanda Rosa, Katelin S Matazel, Anne K Bowlin, Keith D Williams, Ahmed A Elolimy, Sean H Adams, Lars Bode, Laxmi YeruvaFrontiers In Immunology2020-12-07
The Gut Microbiome, Aging, and Longevity: A Systematic Review.Varsha D Badal, Eleonora D Vaccariello, Emily R Murray, Kasey E Yu, Rob Knight, Dilip V Jeste, Tanya T NguyenNutrients2020-12-07
Short chain fatty acids produced by Cutibacterium acnes inhibit biofilm formation by Staphylococcus epidermidis.Kouki Nakamura, Alan M O'Neill, Michael R Williams, Laura Cau, Teruaki Nakatsuji, Alexander R Horswill, Richard L GalloScientific Reports2020-12-04
Understanding Microbial Community Dynamics in Up-Flow Bioreactors to Improve Mitigation Strategies for Oil Souring.Avishek Dutta, Ben Smith, Thomas Goldman, Leanne Walker, Matthew Streets, Bob Eden, Reinhard Dirmeier, Jeff S BowmanFrontiers In Microbiology2020-12-03
Multiplexed CRISPR/CAS9-mediated engineering of pre-clinical mouse models bearing native human B cell receptors.Xuesong Wang, Rashmi Ray, Sven Kratochvil, Eleonora Melzi, Ying-Cing Lin, Sophie Giguere, Liling Xu, John Warner, Diane Cheon, Alessia Liguori, Bettina Groschel, Nicole Phelps, Yumiko Adachi, Ryan Tingle, Lin Wu, Shane Crotty, Kathrin H Kirsch, Usha Nair, William R Schief, Facundo D BatistaThe EMBO Journal2020-12-01
A multiscale coarse-grained model of the SARS-CoV-2 virion.Alvin Yu, Alexander J Pak, Peng He, Viviana Monje-Galvan, Lorenzo Casalino, Zied Gaieb, Abigail C Dommer, Rommie E Amaro, Gregory A VothBiophysical Journal2020-11-28
Survival of the weakest in non-transitive asymmetric interactions among strains of E. coli.Michael J Liao, Arianna Miano, Chloe B Nguyen, Lin Chao, Jeff HastyNature Communications2020-11-27
Role of Epigenetics in the Regulation of Immune Functions of the Skin.Yu Sawada, Richard L GalloThe Journal Of Investigative Dermatology2020-11-27
Vitamin D metabolites and the gut microbiome in older men.Robert L Thomas, Lingjing Jiang, John S Adams, Zhenjiang Zech Xu, Jian Shen, Stefan Janssen, Gail Ackermann, Dirk Vanderschueren, Steven Pauwels, Rob Knight, Eric S Orwoll, Deborah M KadoNature Communications2020-11-26
Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules.Jonathon L Baker, James T Morton, Márcia Dinis, Ruth Alvarez, Nini C Tran, Rob Knight, Anna EdlundGenome Research2020-11-25
Hindering triple negative breast cancer progression by targeting endogenous interleukin-30 requires IFNγ signaling.Carlo Sorrentino, Stefania Livia Ciummo, Luigi D'Antonio, Paola Lanuti, Scott I Abrams, Zhinan Yin, Li-Fan Lu, Emma Di CarloClinical And Translational Medicine2020-11-24
Microbiome of the Aerodigestive Tract in Health and Esophageal Disease.Aws Hasan, Laith K Hasan, Bernd Schnabl, Madeline Greytak, Rena YadlapatiDigestive Diseases And Sciences2020-11-24
Expansion of Gamma-Butyrolactone Signaling Molecule Biosynthesis to Phosphotriester Natural Products.Yuta Kudo, Takayoshi Awakawa, Yi-Ling Du, Peter A Jordan, Kaitlin E Creamer, Paul R Jensen, Roger G Linington, Katherine S Ryan, Bradley S MooreACS Chemical Biology2020-11-24
Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra.Kai Dührkop, Louis-Félix Nothias, Markus Fleischauer, Raphael Reher, Marcus Ludwig, Martin A Hoffmann, Daniel Petras, William H Gerwick, Juho Rousu, Pieter C Dorrestein, Sebastian BöckerNature Biotechnology2020-11-23
Spatial and temporal variations in Synechococcus microdiversity in the Southern California coastal ecosystem.Maitreyi Nagarkar, Maggie Wang, Bellineth Valencia, Brian PalenikEnvironmental Microbiology2020-11-23
Triclosan leads to dysregulation of the metabolic regulator FGF21 exacerbating high fat diet-induced nonalcoholic fatty liver disease.Mei-Fei Yueh, Feng He, Chen Chen, Catherine Vu, Anupriya Tripathi, Rob Knight, Michael Karin, Shujuan Chen, Robert H TukeyProceedings Of The National Academy Of Sciences Of The United States Of America2020-11-23
AI-Driven Multiscale Simulations Illuminate Mechanisms of SARS-CoV-2 Spike Dynamics.Lorenzo Casalino, Abigail Dommer, Zied Gaieb, Emilia P Barros, Terra Sztain, Surl-Hee Ahn, Anda Trifan, Alexander Brace, Anthony Bogetti, Heng Ma, Hyungro Lee, Matteo Turilli, Syma Khalid, Lillian Chong, Carlos Simmerling, David J Hardy, Julio D C Maia, James C Phillips, Thorsten Kurth, Abraham Stern, Lei Huang, John McCalpin, Mahidhar Tatineni, Tom Gibbs, John E Stone, Shantenu Jha, Arvind Ramanathan, Rommie E AmaroBioRxiv : The Preprint Server For Biology2020-11-20
Multiomics Analysis Provides Insight into the Laboratory Evolution of toward the Metabolic Usage of Fluorinated Indoles.Federica Agostini, Ludwig Sinn, Daniel Petras, Christian J Schipp, Vladimir Kubyshkin, Allison Ann Berger, Pieter C Dorrestein, Juri Rappsilber, Nediljko Budisa, Beate KokschACS Central Science2020-11-20
"[It] is now my responsibility to fulfill that wish:" Clinical and rapid autopsy staff members' experiences and perceptions of HIV reservoir research at the end of life.Kelly E Perry, Jeff Taylor, Hursch Patel, Sogol Stephanie Javadi, Kushagra Mathur, Andy Kaytes, Susanna Concha-Garcia, Susan Little, Davey Smith, Sara Gianella, Karine DubéPloS One2020-11-18
Targeting the renin-angiotensin signaling pathway in COVID-19: Unanswered questions, opportunities, and challenges.Krishna Sriram, Rohit Loomba, Paul A InselProceedings Of The National Academy Of Sciences Of The United States Of America2020-11-17
Targeting pathobionts for the treatment of alcohol-associated liver disease.Sonja Lang, Münevver Demir, Bernd SchnablLiver International : Official Journal Of The International Association For The Study Of The Liver2020-11-17
Effective Human Immunodeficiency Virus Molecular Surveillance Requires Identification of Incident Cases of Infection.Susan J Little, Tom Chen, Rui Wang, Christy Anderson, Sergei Kosakovsky Pond, Masato Nakazawa, William C Mathews, Victor DeGruttola, Davey M SmithClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2020-11-17
Intersection of Polycystic Ovary Syndrome and the Gut Microbiome.Maryan G Rizk, Varykina G ThackrayJournal Of The Endocrine Society2020-11-16
Chemically informed analyses of metabolomics mass spectrometry data with Qemistree.Anupriya Tripathi, Yoshiki Vázquez-Baeza, Julia M Gauglitz, Mingxun Wang, Kai Dührkop, Mélissa Nothias-Esposito, Deepa D Acharya, Madeleine Ernst, Justin J J van der Hooft, Qiyun Zhu, Daniel McDonald, Asker D Brejnrod, Antonio Gonzalez, Jo Handelsman, Markus Fleischauer, Marcus Ludwig, Sebastian Böcker, Louis-Félix Nothias, Rob Knight, Pieter C DorresteinNature Chemical Biology2020-11-16
Call for Original Research Papers for a Special Collection in : the Microbiome and Infection.Manuela Raffatellu, Andreas J BäumlerInfection And Immunity2020-11-16
The Balance of Stromal BMP Signaling Mediated by GREM1 and ISLR Drives Colorectal Carcinogenesis.Hiroki Kobayashi, Krystyna A Gieniec, Josephine A Wright, Tongtong Wang, Naoya Asai, Yasuyuki Mizutani, Tadashi Lida, Ryota Ando, Nobumi Suzuki, Tamsin R M Lannagan, Jia Q Ng, Akitoshi Hara, Yukihiro Shiraki, Shinji Mii, Mari Ichinose, Laura Vrbanac, Matthew J Lawrence, Tarik Sammour, Kay Uehara, Gareth Davies, Leszek Lisowski, Ian E Alexander, Yoku Hayakawa, Lisa M Butler, Andrew C W Zannettino, M Omar Din, Jeff Hasty, Alastair D Burt, Simon J Leedham, Anil K Rustgi, Siddhartha Mukherjee, Timothy C Wang, Atsushi Enomoto, Masahide Takahashi, Daniel L Worthley, Susan L WoodsGastroenterology2020-11-14
Sphingosine 1-Phosphate Receptor 2 Is Central to Maintaining Epidermal Barrier Homeostasis.Satomi Igawa, Ayaka Ohzono, Phoebe Pham, Zhenping Wang, Teruaki Nakatsuji, Tatsuya Dokoshi, Anna Di NardoThe Journal Of Investigative Dermatology2020-11-14
The flexibility of ACE2 in the context of SARS-CoV-2 infection.Emilia P Barros, Lorenzo Casalino, Zied Gaieb, Abigail C Dommer, Yuzhang Wang, Lucy Fallon, Lauren Raguette, Kellon Belfon, Carlos Simmerling, Rommie E AmaroBiophysical Journal2020-11-13
High-Quality Genome-Scale Models From Error-Prone, Long-Read Assemblies.Jared T Broddrick, Richard Szubin, Charles J Norsigian, Jonathan M Monk, Bernhard O Palsson, Mary N ParenteauFrontiers In Microbiology2020-11-12
Fungal-bacterial interaction selects for quorum sensing mutants with increased production of natural antifungal compounds.Andrea G Albarracín Orio, Daniel Petras, Romina A Tobares, Alexander A Aksenov, Mingxun Wang, Florencia Juncosa, Pamela Sayago, Alejandro J Moyano, Pieter C Dorrestein, Andrea M SmaniaCommunications Biology2020-11-12
Bare Versus Hair: Do Pubic Hair Grooming Preferences Dictate the Urogenital Microbiome?Julia Geynisman-Tan, Kimberly Kenton, Meera Tavathia, Alyson Yee, Jack A Gilbert, Sarah Collins, Christina Lewicky-Gaupp, Margaret MuellerFemale Pelvic Medicine & Reconstructive Surgery2020-11-11
Elucidation of Regulatory Modes for Five Two-Component Systems in Escherichia coli Reveals Novel Relationships.Kumari Sonal Choudhary, Julia A Kleinmanns, Katherine Decker, Anand V Sastry, Ye Gao, Richard Szubin, Yara Seif, Bernhard O PalssonMSystems2020-11-10
Comparative Circulation Dynamics of the Five Main HIV Types in China.Bram Vrancken, Bin Zhao, Xingguang Li, Xiaoxu Han, Haizhou Liu, Jin Zhao, Ping Zhong, Yi Lin, Junjie Zai, Mingchen Liu, Davey M Smith, Simon Dellicour, Antoine ChaillonJournal Of Virology2020-11-09
Review of Cardiac Involvement in Multisystem Inflammatory Syndrome in Children.Tarek Alsaied, Adriana H Tremoulet, Jane C Burns, Arwa Saidi, Audrey Dionne, Sean M Lang, Jane W Newburger, Sarah de Ferranti, Kevin G FriedmanCirculation2020-11-09
Semicontinuous system for the production of recombinant mCherry protein in Chlamydomonas reinhardtii.Cesar Andres Diaz Arias, Marcelo Chuei Matsudo, Livia Seno Ferreira-Camargo, João Vitor Dutra Molino, Stephen Patrick Mayfield, João Carlos Monteiro de CarvalhoBiotechnology Progress2020-11-09
Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data.Alexander A Aksenov, Ivan Laponogov, Zheng Zhang, Sophie L F Doran, Ilaria Belluomo, Dennis Veselkov, Wout Bittremieux, Louis Felix Nothias, Mélissa Nothias-Esposito, Katherine N Maloney, Biswapriya B Misra, Alexey V Melnik, Aleksandr Smirnov, Xiuxia Du, Kenneth L Jones, Kathleen Dorrestein, Morgan Panitchpakdi, Madeleine Ernst, Justin J J van der Hooft, Mabel Gonzalez, Chiara Carazzone, Adolfo Amézquita, Chris Callewaert, James T Morton, Robert A Quinn, Amina Bouslimani, Andrea Albarracín Orio, Daniel Petras, Andrea M Smania, Sneha P Couvillion, Meagan C Burnet, Carrie D Nicora, Erika Zink, Thomas O Metz, Viatcheslav Artaev, Elizabeth Humston-Fulmer, Rachel Gregor, Michael M Meijler, Itzhak Mizrahi, Stav Eyal, Brooke Anderson, Rachel Dutton, Raphaël Lugan, Pauline Le Boulch, Yann Guitton, Stephanie Prevost, Audrey Poirier, Gaud Dervilly, Bruno Le Bizec, Aaron Fait, Noga Sikron Persi, Chao Song, Kelem Gashu, Roxana Coras, Monica Guma, Julia Manasson, Jose U Scher, Dinesh Kumar Barupal, Saleh Alseekh, Alisdair R Fernie, Reza Mirnezami, Vasilis Vasiliou, Robin Schmid, Roman S Borisov, Larisa N Kulikova, Rob Knight, Mingxun Wang, George B Hanna, Pieter C Dorrestein, Kirill VeselkovNature Biotechnology2020-11-09
Response of Horticultural Soil Microbiota to Different Fertilization Practices.Iratxe Zarraonaindia, Xabier Simón Martínez-Goñi, Olaia Liñero, Marta Muñoz-Colmenero, Mikel Aguirre, David Abad, Igor Baroja-Careaga, Alberto de Diego, Jack A Gilbert, Andone EstonbaPlants (Basel, Switzerland)2020-11-06
Alterations in Gut Microbiota Do Not Play a Causal Role in Diet-independent Weight Gain Caused by Ovariectomy.Lillian Sau, Christine M Olmstead, Laura J Cui, Annie Chen, Reeya S Shah, Scott T Kelley, Varykina G ThackrayJournal Of The Endocrine Society2020-11-05
Verrucosamide, a Cytotoxic 1,4-Thiazepane-Containing Thiodepsipeptide from a Marine-Derived Actinomycete.Vimal Nair, Min Cheol Kim, James A Golen, Arnold L Rheingold, Gabriel A Castro, Paul R Jensen, William FenicalMarine Drugs2020-11-05
The gut mycobiome: a novel player in chronic liver diseases.Lu Jiang, Peter Stärkel, Jian-Gao Fan, Derrick Eugene Fouts, Petra Bacher, Bernd SchnablJournal Of Gastroenterology2020-11-05
Coronavirus, social distancing, and global geriatric mental health crisis: opportunities for promoting wisdom and resilience amid a pandemic.Dilip V JesteInternational Psychogeriatrics2020-11-05
A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis.Tae Gyu Oh, Susy M Kim, Cyrielle Caussy, Ting Fu, Jian Guo, Shirin Bassirian, Seema Singh, Egbert V Madamba, Ricki Bettencourt, Lisa Richards, Ruth T Yu, Annette R Atkins, Tao Huan, David A Brenner, Claude B Sirlin, Michael Downes, Ronald M Evans, Rohit LoombaCell Metabolism2020-11-04
Host variables confound gut microbiota studies of human disease.Ivan Vujkovic-Cvijin, Jack Sklar, Lingjing Jiang, Loki Natarajan, Rob Knight, Yasmine BelkaidNature2020-11-04
Efficient population modification gene-drive rescue system in the malaria mosquito Anopheles stephensi.Adriana Adolfi, Valentino M Gantz, Nijole Jasinskiene, Hsu-Feng Lee, Kristy Hwang, Gerard Terradas, Emily A Bulger, Arunachalam Ramaiah, Jared B Bennett, J J Emerson, John M Marshall, Ethan Bier, Anthony A JamesNature Communications2020-11-03
Discovery of novel secondary metabolites encoded in actinomycete genomes through coculture.Ji Hun Kim, Namil Lee, Soonkyu Hwang, Woori Kim, Yongjae Lee, Suhyung Cho, Bernhard O Palsson, Byung-Kwan ChoJournal Of Industrial Microbiology & Biotechnology2020-11-02
Bacterial-fungal interactions revealed by genome-wide analysis of bacterial mutant fitness.Emily C Pierce, Manon Morin, Jessica C Little, Roland B Liu, Joanna Tannous, Nancy P Keller, Kit Pogliano, Benjamin E Wolfe, Laura M Sanchez, Rachel J DuttonNature Microbiology2020-11-02
High Prevalence of HIV-1 Drug Resistance and Dynamics of Transmission Among High-Risk Populations in Port-au-Prince, Haiti.Frantz Jean Louis, Jean Wysler Domercant, Caroline Ignacio, Sara Gianella, Guethina Galbaud, Maureen Leonard, Davey M Smith, Antoine ChaillonJournal Of Acquired Immune Deficiency Syndromes (1999)2020-11-02
Multiscale Simulations Examining Glycan Shield Effects on Drug Binding to Influenza Neuraminidase.Christian Seitz, Lorenzo Casalino, Robert Konecny, Gary Huber, Rommie E Amaro, J Andrew McCammonBiophysical Journal2020-10-31
A cysteine protease inhibitor blocks SARS-CoV-2 infection of human and monkey cells.Drake M Mellott, Chien-Te Tseng, Aleksandra Drelich, Pavla Fajtová, Bala C Chenna, Demetrios H Kostomiris, Jason Hsu, Jiyun Zhu, Zane W Taylor, Vivian Tat, Ardala Katzfuss, Linfeng Li, Miriam A Giardini, Danielle Skinner, Ken Hirata, Sungjun Beck, Aaron F Carlin, Alex E Clark, Laura Beretta, Daniel Maneval, Felix Frueh, Brett L Hurst, Hong Wang, Klaudia I Kocurek, Frank M Raushel, Anthony J O'Donoghue, Jair Lage de Siqueira-Neto, Thomas D Meek, James H McKerrowBioRxiv : The Preprint Server For Biology2020-10-30
Expanding magnetic organelle biogenesis in the domain Bacteria.Wei Lin, Wensi Zhang, Greig A Paterson, Qiyun Zhu, Xiang Zhao, Rob Knight, Dennis A Bazylinski, Andrew P Roberts, Yongxin PanMicrobiome2020-10-30
Maintaining Patient Safety and Data Integrity of Nonalcoholic Steatohepatitis Clinical Trials During the Severe Acute Respiratory Syndrome-Coronavirus 2 Pandemic.Naim Alkhouri, Anita Kohli, Rohit Loomba, Stephen A HarrisonHepatology (Baltimore, Md.)2020-10-29
Trajectories of Depressive Symptoms, Neurocognitive Function, and Viral Suppression With Antiretroviral Therapy Among Youth With HIV Over 36 months.Jordan N Kohn, Matthew Shane Loop, Julie J Kim-Chang, Patricia A Garvie, John W Sleasman, Bernard Fischer, H Jonathon Rendina, Steven Paul Woods, Sharon L Nichols, Suzi HongJournal Of Acquired Immune Deficiency Syndromes (1999)2020-10-28
Exploration of Bacterial Bottlenecks and Streptococcus pneumoniae Pathogenesis by CRISPRi-Seq.Xue Liu, Jacqueline M Kimmey, Laura Matarazzo, Vincent de Bakker, Laurye Van Maele, Jean-Claude Sirard, Victor Nizet, Jan-Willem VeeningCell Host & Microbe2020-10-28
RAAS Inhibitors and Risk of Covid-19.Krishna Sriram, Rohit Loomba, Paul A InselThe New England Journal Of Medicine2020-10-27
Genetic elucidation of interconnected antibiotic pathways mediating maize innate immunity.Yezhang Ding, Philipp R Weckwerth, Elly Poretsky, Katherine M Murphy, James Sims, Evan Saldivar, Shawn A Christensen, Si Nian Char, Bing Yang, Anh-Dao Tong, Zhouxin Shen, Karl A Kremling, Edward S Buckler, Tom Kono, David R Nelson, Jörg Bohlmann, Matthew G Bakker, Martha M Vaughan, Ahmed S Khalil, Mariam Betsiashvili, Keini Dressano, Tobias G Köllner, Steven P Briggs, Philipp Zerbe, Eric A Schmelz, Alisa HuffakerNature Plants2020-10-26
Harmonising regulatory approval for antibiotics in children.Phoebe C M Williams, John Bradley, Emmanuel Roilides, Linus Olson, Sheldon Kaplan, Irja Lutsar, Carlo Giaquinto, Daniel K Benjamin, Mike SharlandThe Lancet. Child & Adolescent Health2020-10-24
Role of Carbon Monoxide in Host-Gut Microbiome Communication.Christopher P Hopper, Ladie Kimberly De La Cruz, Kristin V Lyles, Lauren K Wareham, Jack A Gilbert, Zehava Eichenbaum, Marcin Magierowski, Robert K Poole, Jakob Wollborn, Binghe WangChemical Reviews2020-10-22
CAICE Studies: Insights from a Decade of Ocean-Atmosphere Experiments in the Laboratory.Kathryn J Mayer, Jon S Sauer, Julie Dinasquet, Kimberly A PratherAccounts Of Chemical Research2020-10-22
Gut microbiome in Schizophrenia: Altered functional pathways related to immune modulation and atherosclerotic risk.Tanya T Nguyen, Tomasz Kosciolek, Rebecca E Daly, Yoshiki Vázquez-Baeza, Austin Swafford, Rob Knight, Dilip V JesteBrain, Behavior, And Immunity2020-10-22
Systems biology analysis of the Clostridioides difficile core-genome contextualizes microenvironmental evolutionary pressures leading to genotypic and phenotypic divergence.Charles J Norsigian, Heather A Danhof, Colleen K Brand, Numan Oezguen, Firas S Midani, Bernhard O Palsson, Tor C Savidge, Robert A Britton, Jennifer K Spinler, Jonathan M MonkNPJ Systems Biology And Applications2020-10-20
Introducing the Mangrove Microbiome Initiative: Identifying Microbial Research Priorities and Approaches To Better Understand, Protect, and Rehabilitate Mangrove Ecosystems.Sarah M Allard, Matthew T Costa, Ashley N Bulseco, Véronique Helfer, Laetitia G E Wilkins, Christiane Hassenrück, Karsten Zengler, Martin Zimmer, Natalia Erazo, Jorge L Mazza Rodrigues, Norman Duke, Vânia M M Melo, Inka Vanwonterghem, Howard Junca, Huxley M Makonde, Diego Javier Jiménez, Tallita C L Tavares, Marco Fusi, Daniele Daffonchio, Carlos M Duarte, Raquel S Peixoto, Alexandre S Rosado, Jack A Gilbert, Jeff BowmanMSystems2020-10-20
Identifying the effect of vancomycin on health care-associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media.Akanksha Rajput, Saugat Poudel, Hannah Tsunemoto, Michael Meehan, Richard Szubin, Connor A Olson, Yara Seif, Anne Lamsa, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M Monk, Pieter C Dorrestein, Rob Knight, Joe Pogliano, Victor Nizet, Adam M Feist, Bernhard O PalssonGigaScience2020-10-20
Dynamics and Dispersal of Local HIV Epidemics Within San Diego and Across The San Diego-Tijuana Border.Bram Vrancken, Sanjay R Mehta, Santiago Ávila-Ríos, Claudia García-Morales, Daniela Tapia-Trejo, Gustavo Reyes-Terán, Samuel Navarro-Álvarez, Susan J Little, Martin Hoenigl, Heather A Pines, Thomas Patterson, Steffanie A Strathdee, Davey M Smith, Simon Dellicour, Antoine ChaillonClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2020-10-20
Evaluation of IL-17D in Host Immunity to Group A Infection.Allen Washington, Nissi Varki, J Andrés Valderrama, Victor Nizet, Jack D BuiJournal Of Immunology (Baltimore, Md. : 1950)2020-10-19
Expert Panel Review on Non-Alcoholic Fatty Liver Disease in Persons With HIV.Jordan E Lake, Turner Overton, Susanna Naggie, Mark Sulkowski, Rohit Loomba, David E Kleiner, Jennifer C Price, Kara W Chew, Raymond T Chung, Kathleen E CoreyClinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association2020-10-16
Content and Performance of the MiniMUGA Genotyping Array: A New Tool To Improve Rigor and Reproducibility in Mouse Research.John Sebastian Sigmon, Matthew W Blanchard, Ralph S Baric, Timothy A Bell, Jennifer Brennan, Gudrun A Brockmann, A Wesley Burks, J Mauro Calabrese, Kathleen M Caron, Richard E Cheney, Dominic Ciavatta, Frank Conlon, David B Darr, James Faber, Craig Franklin, Timothy R Gershon, Lisa Gralinski, Bin Gu, Christiann H Gaines, Robert S Hagan, Ernest G Heimsath, Mark T Heise, Pablo Hock, Folami Ideraabdullah, J Charles Jennette, Tal Kafri, Anwica Kashfeen, Mike Kulis, Vivek Kumar, Colton Linnertz, Alessandra Livraghi-Butrico, K C Kent Lloyd, Cathleen Lutz, Rachel M Lynch, Terry Magnuson, Glenn K Matsushima, Rachel McMullan, Darla R Miller, Karen L Mohlke, Sheryl S Moy, Caroline E Y Murphy, Maya Najarian, Lori O'Brien, Abraham A Palmer, Benjamin D Philpot, Scott H Randell, Laura Reinholdt, Yuyu Ren, Steve Rockwood, Allison R Rogala, Avani Saraswatula, Christopher M Sassetti, Jonathan C Schisler, Sarah A Schoenrock, Ginger D Shaw, John R Shorter, Clare M Smith, Celine L St Pierre, Lisa M Tarantino, David W Threadgill, William Valdar, Barbara J Vilen, Keegan Wardwell, Jason K Whitmire, Lucy Williams, Mark J Zylka, Martin T Ferris, Leonard McMillan, Fernando Pardo Manuel de VillenaGenetics2020-10-16
A high-stringency blueprint of the human proteome.Subash Adhikari, Edouard C Nice, Eric W Deutsch, Lydie Lane, Gilbert S Omenn, Stephen R Pennington, Young-Ki Paik, Christopher M Overall, Fernando J Corrales, Ileana M Cristea, Jennifer E Van Eyk, Mathias Uhlén, Cecilia Lindskog, Daniel W Chan, Amos Bairoch, James C Waddington, Joshua L Justice, Joshua LaBaer, Henry Rodriguez, Fuchu He, Markus Kostrzewa, Peipei Ping, Rebekah L Gundry, Peter Stewart, Sanjeeva Srivastava, Sudhir Srivastava, Fabio C S Nogueira, Gilberto B Domont, Yves Vandenbrouck, Maggie P Y Lam, Sara Wennersten, Juan Antonio Vizcaino, Marc Wilkins, Jochen M Schwenk, Emma Lundberg, Nuno Bandeira, Gyorgy Marko-Varga, Susan T Weintraub, Charles Pineau, Ulrike Kusebauch, Robert L Moritz, Seong Beom Ahn, Magnus Palmblad, Michael P Snyder, Ruedi Aebersold, Mark S BakerNature Communications2020-10-16
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.David E Gordon, Joseph Hiatt, Mehdi Bouhaddou, Veronica V Rezelj, Svenja Ulferts, Hannes Braberg, Alexander S Jureka, Kirsten Obernier, Jeffrey Z Guo, Jyoti Batra, Robyn M Kaake, Andrew R Weckstein, Tristan W Owens, Meghna Gupta, Sergei Pourmal, Erron W Titus, Merve Cakir, Margaret Soucheray, Michael McGregor, Zeynep Cakir, Gwendolyn Jang, Matthew J O'Meara, Tia A Tummino, Ziyang Zhang, Helene Foussard, Ajda Rojc, Yuan Zhou, Dmitry Kuchenov, Ruth Hüttenhain, Jiewei Xu, Manon Eckhardt, Danielle L Swaney, Jacqueline M Fabius, Manisha Ummadi, Beril Tutuncuoglu, Ujjwal Rathore, Maya Modak, Paige Haas, Kelsey M Haas, Zun Zar Chi Naing, Ernst H Pulido, Ying Shi, Inigo Barrio-Hernandez, Danish Memon, Eirini Petsalaki, Alistair Dunham, Miguel Correa Marrero, David Burke, Cassandra Koh, Thomas Vallet, Jesus A Silvas, Caleigh M Azumaya, Christian Billesbølle, Axel F Brilot, Melody G Campbell, Amy Diallo, Miles Sasha Dickinson, Devan Diwanji, Nadia Herrera, Nick Hoppe, Huong T Kratochvil, Yanxin Liu, Gregory E Merz, Michelle Moritz, Henry C Nguyen, Carlos Nowotny, Cristina Puchades, Alexandrea N Rizo, Ursula Schulze-Gahmen, Amber M Smith, Ming Sun, Iris D Young, Jianhua Zhao, Daniel Asarnow, Justin Biel, Alisa Bowen, Julian R Braxton, Jen Chen, Cynthia M Chio, Un Seng Chio, Ishan Deshpande, Loan Doan, Bryan Faust, Sebastian Flores, Mingliang Jin, Kate Kim, Victor L Lam, Fei Li, Junrui Li, Yen-Li Li, Yang Li, Xi Liu, Megan Lo, Kyle E Lopez, Arthur A Melo, Frank R Moss, Phuong Nguyen, Joana Paulino, Komal Ishwar Pawar, Jessica K Peters, Thomas H Pospiech, Maliheh Safari, Smriti Sangwan, Kaitlin Schaefer, Paul V Thomas, Aye C Thwin, Raphael Trenker, Eric Tse, Tsz Kin Martin Tsui, Feng Wang, Natalie Whitis, Zanlin Yu, Kaihua Zhang, Yang Zhang, Fengbo Zhou, Daniel Saltzberg, , Anthony J Hodder, Amber S Shun-Shion, Daniel M Williams, Kris M White, Romel Rosales, Thomas Kehrer, Lisa Miorin, Elena Moreno, Arvind H Patel, Suzannah Rihn, Mir M Khalid, Albert Vallejo-Gracia, Parinaz Fozouni, Camille R Simoneau, Theodore L Roth, David Wu, Mohd Anisul Karim, Maya Ghoussaini, Ian Dunham, Francesco Berardi, Sebastian Weigang, Maxime Chazal, Jisoo Park, James Logue, Marisa McGrath, Stuart Weston, Robert Haupt, C James Hastie, Matthew Elliott, Fiona Brown, Kerry A Burness, Elaine Reid, Mark Dorward, Clare Johnson, Stuart G Wilkinson, Anna Geyer, Daniel M Giesel, Carla Baillie, Samantha Raggett, Hannah Leech, Rachel Toth, Nicola Goodman, Kathleen C Keough, Abigail L Lind, , Reyna J Klesh, Kafi R Hemphill, Jared Carlson-Stevermer, Jennifer Oki, Kevin Holden, Travis Maures, Katherine S Pollard, Andrej Sali, David A Agard, Yifan Cheng, James S Fraser, Adam Frost, Natalia Jura, Tanja Kortemme, Aashish Manglik, Daniel R Southworth, Robert M Stroud, Dario R Alessi, Paul Davies, Matthew B Frieman, Trey Ideker, Carmen Abate, Nolwenn Jouvenet, Georg Kochs, Brian Shoichet, Melanie Ott, Massimo Palmarini, Kevan M Shokat, Adolfo García-Sastre, Jeremy A Rassen, Robert Grosse, Oren S Rosenberg, Kliment A Verba, Christopher F Basler, Marco Vignuzzi, Andrew A Peden, Pedro Beltrao, Nevan J KroganScience (New York, N.Y.)2020-10-15
Targeting the gut-liver-immune axis to treat cirrhosis.Thomas Henry Tranah, Lindsey A Edwards, Bernd Schnabl, Debbie Lindsay ShawcrossGut2020-10-15
Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2020 Recommendations of the International Antiviral Society-USA Panel.Michael S Saag, Rajesh T Gandhi, Jennifer F Hoy, Raphael J Landovitz, Melanie A Thompson, Paul E Sax, Davey M Smith, Constance A Benson, Susan P Buchbinder, Carlos Del Rio, Joseph J Eron, Gerd Fätkenheuer, Huldrych F Günthard, Jean-Michel Molina, Donna M Jacobsen, Paul A VolberdingJAMA2020-10-15
Functional and Structural Insights into a Vif/PPP2R5 Complex Elucidated Using Patient HIV-1 Isolates and Computational Modeling.Daniel J Salamango, Jennifer L McCann, Özlem Demir, Jordan T Becker, Jiayi Wang, Jairam R Lingappa, Nuri A Temiz, William L Brown, Rommie E Amaro, Reuben S HarrisJournal Of Virology2020-10-14
TLR4 signaling and macrophage inflammatory responses are dampened by GIV/Girdin.Lee Swanson, Gajanan D Katkar, Julian Tam, Rama F Pranadinata, Yogitha Chareddy, Jane Coates, Mahitha Shree Anandachar, Vanessa Castillo, Joshua Olson, Victor Nizet, Irina Kufareva, Soumita Das, Pradipta GhoshProceedings Of The National Academy Of Sciences Of The United States Of America2020-10-14
Metabolites from Microbes Isolated from the Skin of the Panamanian Rocket Frog (Anura: Dendrobatidae).Christian Martin H, Roberto Ibáñez, Louis-Félix Nothias, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein, Marcelino GutiérrezMetabolites2020-10-13
Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV.Bryn C Taylor, Kelly C Weldon, Ronald J Ellis, Donald Franklin, Daniel McDonald, Gregory Humphrey, MacKenzie Bryant, Julia Toronczak, Tara Schwartz, Jennifer Iudicello, Robert Heaton, Igor Grant, Sara Gianella, Scott Letendre, Austin Swafford, Pieter C Dorrestein, Rob KnightMSystems2020-10-13
Early-life gut dysbiosis linked to juvenile mortality in ostriches.Elin Videvall, Se Jin Song, Hanna M Bensch, Maria Strandh, Anel Engelbrecht, Naomi Serfontein, Olof Hellgren, Adriaan Olivier, Schalk Cloete, Rob Knight, Charlie K CornwallisMicrobiome2020-10-12
Intestinal Virome in Patients With Alcoholic Hepatitis.Lu Jiang, Sonja Lang, Yi Duan, Xinlian Zhang, Bei Gao, Jessica Chopyk, Leila K Schwanemann, Meritxell Ventura-Cots, Ramon Bataller, Francisco Bosques-Padilla, Elizabeth C Verna, Juan G Abraldes, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie L Shawcross, Samuel B Ho, Alexandre Louvet, Michael R Lucey, Philippe Mathurin, Guadalupe Garcia-Tsao, Tatiana Kisseleva, David A Brenner, Xin M Tu, Peter Stärkel, David Pride, Derrick E Fouts, Bernd SchnablHepatology (Baltimore, Md.)2020-10-10
Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity.Xin Fang, Yoshiki Vázquez-Baeza, Emmanuel Elijah, Fernando Vargas, Gail Ackermann, Gregory Humphrey, Rebecca Lau, Kelly C Weldon, Jon G Sanders, Morgan Panitchpakdi, Carolina Carpenter, Alan K Jarmusch, Jennifer Neill, Ara Miralles, Parambir Dulai, Siddharth Singh, Matthew Tsai, Austin D Swafford, Larry Smarr, David L Boyle, Bernhard O Palsson, John T Chang, Pieter C Dorrestein, William J Sandborn, Rob Knight, Brigid S BolandInflammatory Bowel Diseases2020-10-07
Cross-reactive memory T cells and herd immunity to SARS-CoV-2.Marc Lipsitch, Yonatan H Grad, Alessandro Sette, Shane CrottyNature Reviews. Immunology2020-10-06
Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of Antibiotic.Alison Vrbanac, Kathryn A Patras, Alan K Jarmusch, Robert H Mills, Samuel R Shing, Robert A Quinn, Fernando Vargas, David J Gonzalez, Pieter C Dorrestein, Rob Knight, Victor NizetMSystems2020-10-06
Distinctive gene and protein characteristics of extremely piezophilic Colwellia.Logan M Peoples, Than S Kyaw, Juan A Ugalde, Kelli K Mullane, Roger A Chastain, A Aristides Yayanos, Masataka Kusube, Barbara A Methé, Douglas H BartlettBMC Genomics2020-10-06
Prophage exotoxins enhance colonization fitness in epidemic scarlet fever-causing Streptococcus pyogenes.Stephan Brouwer, Timothy C Barnett, Diane Ly, Katherine J Kasper, David M P De Oliveira, Tania Rivera-Hernandez, Amanda J Cork, Liam McIntyre, Magnus G Jespersen, Johanna Richter, Benjamin L Schulz, Gordon Dougan, Victor Nizet, Kwok-Yung Yuen, Yuanhai You, John K McCormick, Martina L Sanderson-Smith, Mark R Davies, Mark J WalkerNature Communications2020-10-06
metaFlye: scalable long-read metagenome assembly using repeat graphs.Mikhail Kolmogorov, Derek M Bickhart, Bahar Behsaz, Alexey Gurevich, Mikhail Rayko, Sung Bong Shin, Kristen Kuhn, Jeffrey Yuan, Evgeny Polevikov, Timothy P L Smith, Pavel A PevznerNature Methods2020-10-05
Airborne transmission of SARS-CoV-2.Kimberly A Prather, Linsey C Marr, Robert T Schooley, Melissa A McDiarmid, Mary E Wilson, Donald K MiltonScience (New York, N.Y.)2020-10-05
Cholesterol 25-Hydroxylase inhibits SARS-CoV-2 and other coronaviruses by depleting membrane cholesterol.Shaobo Wang, Wanyu Li, Hui Hui, Shashi Kant Tiwari, Qiong Zhang, Ben A Croker, Stephen Rawlings, Davey Smith, Aaron F Carlin, Tariq M RanaThe EMBO Journal2020-10-05
Fecal Microbiota Transplantation Is Highly Effective in Real-World Practice: Initial Results From the FMT National Registry.Colleen R Kelly, Eugene F Yen, Ari M Grinspan, Stacy A Kahn, Ashish Atreja, James D Lewis, Thomas A Moore, David T Rubin, Alison M Kim, Sonya Serra, Yanina Nersesova, Lydia Fredell, Dea Hunsicker, Daniel McDonald, Rob Knight, Jessica R Allegretti, Joel Pekow, Imad Absah, Ronald Hsu, Jennifer Vincent, Sahil Khanna, Lyn Tangen, Carl V Crawford, Mark C Mattar, Lea Ann Chen, Monika Fischer, Razvan I Arsenescu, Paul Feuerstadt, Jonathan Goldstein, David Kerman, Adam C Ehrlich, Gary D Wu, Loren LaineGastroenterology2020-10-01
Transcriptomic Analysis Reveals Common Adaptation Mechanisms Under Different Stresses for Moderately Piezophilic Bacteria.Han Wang, Yu Zhang, Douglas H Bartlett, Xiang XiaoMicrobial Ecology2020-09-30
A Distinct Microbiome Signature in Posttreatment Lyme Disease Patients.Madeleine Morrissette, Norman Pitt, Antonio González, Philip Strandwitz, Mariaelena Caboni, Alison W Rebman, Rob Knight, Anthony D'Onofrio, John N Aucott, Mark J Soloski, Kim LewisMBio2020-09-29
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikJournal Of Virology2020-09-29
Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome.Bryn C Taylor, Kelly C Weldon, Ronald J Ellis, Donald Franklin, Tobin Groth, Emily C Gentry, Anupriya Tripathi, Daniel McDonald, Gregory Humphrey, MacKenzie Bryant, Julia Toronczak, Tara Schwartz, Michelli F Oliveira, Robert Heaton, Igor Grant, Sara Gianella, Scott Letendre, Austin Swafford, Pieter C Dorrestein, Rob KnightMSystems2020-09-29
Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans.Connie W Y Ha, Anthony Martin, Gregory D Sepich-Poore, Baochen Shi, Yizhou Wang, Kenneth Gouin, Gregory Humphrey, Karenina Sanders, Yasiru Ratnayake, Kelvin S L Chan, Gustaf Hendrick, J R Caldera, Christian Arias, Jacob E Moskowitz, Shannan J Ho Sui, Shaohong Yang, David Underhill, Matthew J Brady, Simon Knott, Kelly Kaihara, Michael J Steinbaugh, Huiying Li, Dermot P B McGovern, Rob Knight, Phillip Fleshner, Suzanne DevkotaCell2020-09-28
Androsamide, a Cyclic Tetrapeptide from a Marine sp., Suppresses Motility of Colorectal Cancer Cells.Jihye Lee, Chathurika D B Gamage, Geum Jin Kim, Prima F Hillman, Chaeyoung Lee, Eun Young Lee, Hyukjae Choi, Hangun Kim, Sang-Jip Nam, William FenicalJournal Of Natural Products2020-09-28
Optimal Threshold of Controlled Attenuation Parameter for Detection of HIV-Associated NAFLD With Magnetic Resonance Imaging as the Reference Standard.Veeral H Ajmera, Edward R Cachay, Christian B Ramers, Shirin Bassirian, Seema Singh, Richele Bettencourt, Lisa Richards, Gavin Hamilton, Michael Middleton, Katie Fowler, Claude Sirlin, Rohit LoombaClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2020-09-25
Yeast homologs of human MCUR1 regulate mitochondrial proline metabolism.Mohammad Zulkifli, John K Neff, Shrishiv A Timbalia, Natalie M Garza, Yingqi Chen, Jeramie D Watrous, Marta Murgia, Prachi P Trivedi, Steven K Anderson, Dhanendra Tomar, Roland Nilsson, Muniswamy Madesh, Mohit Jain, Vishal M GohilNature Communications2020-09-25
Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut microbiota.Anton Lavrinienko, Eugene Tukalenko, Timothy A Mousseau, Luke R Thompson, Rob Knight, Tapio Mappes, Phillip C WattsScientific Data2020-09-23
Nutrition and the Gut Microbiota in 10- to 18-Month-Old Children Living in Urban Slums of Mumbai, India.Samantha L Huey, Lingjing Jiang, Marcus W Fedarko, Daniel McDonald, Cameron Martino, Farhana Ali, David G Russell, Shobha A Udipi, Aparna Thorat, Varsha Thakker, Padmini Ghugre, R D Potdar, Harsha Chopra, Kripa Rajagopalan, Jere D Haas, Julia L Finkelstein, Rob Knight, Saurabh MehtaMSphere2020-09-23
Cross-reactive serum and memory B cell responses to spike protein in SARS-CoV-2 and endemic coronavirus infection.Ge Song, Wan-Ting He, Sean Callaghan, Fabio Anzanello, Deli Huang, James Ricketts, Jonathan L Torres, Nathan Beutler, Linghang Peng, Sirena Vargas, Jon Cassell, Mara Parren, Linlin Yang, Caroline Ignacio, Davey M Smith, James E Voss, David Nemazee, Andrew B Ward, Thomas Rogers, Dennis R Burton, Raiees AndrabiBioRxiv : The Preprint Server For Biology2020-09-23
The Bitome: digitized genomic features reveal fundamental genome organization.Cameron R Lamoureux, Kumari Sonal Choudhary, Zachary A King, Troy E Sandberg, Ye Gao, Anand V Sastry, Patrick V Phaneuf, Donghui Choe, Byung-Kwan Cho, Bernhard O PalssonNucleic Acids Research2020-09-23
The Pseudomonas aeruginosa protease LasB directly activates IL-1β.Josh Sun, Doris L LaRock, Elaine A Skowronski, Jacqueline M Kimmey, Joshua Olson, Zhenze Jiang, Anthony J O'Donoghue, Victor Nizet, Christopher N LaRockEBioMedicine2020-09-23
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikJournal Of Clinical Microbiology2020-09-22
CD8 T cells drive anorexia, dysbiosis, and blooms of a commensal with immunosuppressive potential after viral infection.Lara Labarta-Bajo, Anna Gramalla-Schmitz, Romana R Gerner, Katelynn R Kazane, Gregory Humphrey, Tara Schwartz, Karenina Sanders, Austin Swafford, Rob Knight, Manuela Raffatellu, Elina I ZúñigaProceedings Of The National Academy Of Sciences Of The United States Of America2020-09-21
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikAntimicrobial Agents And Chemotherapy2020-09-21
Reconstructing organisms in silico: genome-scale models and their emerging applications.Xin Fang, Colton J Lloyd, Bernhard O PalssonNature Reviews. Microbiology2020-09-21
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikInfection And Immunity2020-09-18
Antigen-Specific Adaptive Immunity to SARS-CoV-2 in Acute COVID-19 and Associations with Age and Disease Severity.Carolyn Rydyznski Moderbacher, Sydney I Ramirez, Jennifer M Dan, Alba Grifoni, Kathryn M Hastie, Daniela Weiskopf, Simon Belanger, Robert K Abbott, Christina Kim, Jinyong Choi, Yu Kato, Eleanor G Crotty, Cheryl Kim, Stephen A Rawlings, Jose Mateus, Long Ping Victor Tse, April Frazier, Ralph Baric, Bjoern Peters, Jason Greenbaum, Erica Ollmann Saphire, Davey M Smith, Alessandro Sette, Shane CrottyCell2020-09-16
Biomolecular Simulations in the Time of COVID19, and After.Rommie E Amaro, Adrian J MulhollandComputing In Science & Engineering2020-09-15
iModulonDB: a knowledgebase of microbial transcriptional regulation derived from machine learning.Kevin Rychel, Katherine Decker, Anand V Sastry, Patrick V Phaneuf, Saugat Poudel, Bernhard O PalssonNucleic Acids Research2020-09-15
HIV Care Prioritization Using Phylogenetic Branch Length.Niema Moshiri, Davey M Smith, Siavash MirarabJournal Of Acquired Immune Deficiency Syndromes (1999)2020-09-14
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets.Meena Choi, Jeremy Carver, Cristina Chiva, Manuel Tzouros, Ting Huang, Tsung-Heng Tsai, Benjamin Pullman, Oliver M Bernhardt, Ruth Hüttenhain, Guo Ci Teo, Yasset Perez-Riverol, Jan Muntel, Maik Müller, Sandra Goetze, Maria Pavlou, Erik Verschueren, Bernd Wollscheid, Alexey I Nesvizhskii, Lukas Reiter, Tom Dunkley, Eduard Sabidó, Nuno Bandeira, Olga VitekNature Methods2020-09-14
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikMolecular And Cellular Biology2020-09-14
Genetic examination of the marine bacterium Pseudoalteromonas luteoviolacea and effects of its metamorphosis-inducing factors.Amanda T Alker, Nathalie Delherbe, Trevor N Purdy, Bradley S Moore, Nicholas J ShikumaEnvironmental Microbiology2020-09-13
Shining Light on the COVID-19 Pandemic: A Vitamin D Receptor Checkpoint in Defense of Unregulated Wound Healing.Ronald M Evans, Scott M LippmanCell Metabolism2020-09-11
From intestinal dysbiosis to alcohol-associated liver disease.Beatriz Garcia Mendes, Bernd SchnablClinical And Molecular Hepatology2020-09-11
Complementary Genomic, Bioinformatics, and Chemical Approaches Facilitate the Absolute Structure Assignment of Ionostatin, a Linear Polyketide from a Rare Marine-Derived Actinomycete.Min Cheol Kim, Jaclyn M Winter, Reiko Cullum, Zhifei Li, William FenicalACS Chemical Biology2020-09-09
The microbiota in cirrhosis and its role in hepatic decompensation.Jonel Trebicka, Jane Macnaughtan, Bernd Schnabl, Debbie L Shawcross, Jasmohan S BajajJournal Of Hepatology2020-09-08
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikJournal Of Bacteriology2020-09-08
Recommendations for measuring HIV reservoir size in cure-directed clinical trials.Mohamed Abdel-Mohsen, Douglas Richman, Robert F Siliciano, Michel C Nussenzweig, Bonnie J Howell, Javier Martinez-Picado, Nicolas Chomont, Katharine J Bar, Xu G Yu, Mathias Lichterfeld, Jose Alcami, Daria Hazuda, Frederic Bushman, Janet D Siliciano, Michael R Betts, Adam M Spivak, Vicente Planelles, Beatrice H Hahn, Davey M Smith, Ya-Chi Ho, Maria J Buzon, Christian Gaebler, Mirko Paiardini, Qingsheng Li, Jacob D Estes, Thomas J Hope, Jay Kostman, Karam Mounzer, Marina Caskey, Lawrence Fox, Ian Frank, James L Riley, Pablo Tebas, Luis J Montaner, Nature Medicine2020-09-07
Lactose-reduced infant formula with added corn syrup solids is associated with a distinct gut microbiota in Hispanic infants.Roshonda B Jones, Paige K Berger, Jasmine F Plows, Tanya L Alderete, Joshua Millstein, Jennifer Fogel, Stanislav N Iablokov, Dmitry A Rodionov, Andrei L Osterman, Lars Bode, Michael I GoranGut Microbes2020-09-05
ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy.Chao Zhang, Celine Scornavacca, Erin K Molloy, Siavash MirarabMolecular Biology And Evolution2020-09-05
Lactobacillus commensals autochthonous to human milk have the hallmarks of potent probiotics.Jasia Anjum, Shahid Nazir, Muhammad Tariq, Kim Barrett, Arsalan ZaidiMicrobiology (Reading, England)2020-09-04
Cost-effectiveness analysis of pre-exposure prophylaxis for the prevention of HIV in men who have sex with men in South Korea: a mathematical modelling study.Heun Choi, Jiyeon Suh, Woonji Lee, Jun Hyoung Kim, Jung Ho Kim, Hye Seong, Jin Young Ahn, Su Jin Jeong, Nam Su Ku, Yoon Soo Park, Joon Sup Yeom, Changsoo Kim, Hee-Dae Kwon, Davey M Smith, Jeehyun Lee, Jun Yong ChoiScientific Reports2020-09-03
Genome Mining, Microbial Interactions, and Molecular Networking Reveals New Dibromoalterochromides from Strains of of Coiba National Park-Panama.Librada A Atencio, Cristopher A Boya P, Christian Martin H, Luis C Mejía, Pieter C Dorrestein, Marcelino GutiérrezMarine Drugs2020-09-03
Suppression of local type I interferon by gut microbiota-derived butyrate impairs antitumor effects of ionizing radiation.Kaiting Yang, Yuzhu Hou, Yuan Zhang, Hua Liang, Anukriti Sharma, Wenxin Zheng, Liangliang Wang, Rolando Torres, Ken Tatebe, Steven J Chmura, Sean P Pitroda, Jack A Gilbert, Yang-Xin Fu, Ralph R WeichselbaumThe Journal Of Experimental Medicine2020-09-03
Genome-Wide Dynamic Evaluation of the UV-Induced DNA Damage Response.Erica Silva, Manuel Michaca, Brenton Munson, Gordon J Bean, Philipp A Jaeger, Katherine Licon, Elizabeth A Winzeler, Trey IdekerG3 (Bethesda, Md.)2020-09-02
Chemical composition of material extractives influences microbial growth and dynamics on wetted wood materials.Dan Zhao, Cesar Cardona, Neil Gottel, Valerie J Winton, Paul M Thomas, Daniel A Raba, Scott T Kelley, Christopher Henry, Jack A Gilbert, Brent StephensScientific Reports2020-09-02
Loneliness Versus Wisdom Amid Two Concurrent Pandemics of Loneliness.Dilip V Jeste, Ellen E LeeThe American Journal Of Geriatric Psychiatry : Official Journal Of The American Association For Geriatric Psychiatry2020-09-02
Discovery and Verification of Extracellular miRNA Biomarkers for Non-invasive Prediction of Pre-eclampsia in Asymptomatic Women.Srimeenakshi Srinivasan, Ryan Treacy, Tiffany Herrero, Richelle Olsen, Trevor R Leonardo, Xuan Zhang, Peter DeHoff, Cuong To, Lara G Poling, Aileen Fernando, Sandra Leon-Garcia, Katharine Knepper, Vy Tran, Morgan Meads, Jennifer Tasarz, Aishwarya Vuppala, Soojin Park, Clara D Laurent, Tony Bui, Pike See Cheah, Rachael Tabitha Overcash, Gladys A Ramos, Hilary Roeder, Ionita Ghiran, Mana Parast, , Xandra O Breakefield, Amir J Lueth, Sharon R Rust, Max T Dufford, Angela C Fox, Durlin E Hickok, Julja Burchard, J Jay Boniface, Louise C LaurentCell Reports. Medicine2020-09-01
B cells expressing authentic naive human VRC01-class BCRs can be recruited to germinal centers and affinity mature in multiple independent mouse models.Deli Huang, Robert K Abbott, Colin Havenar-Daughton, Patrick D Skog, Rita Al-Kolla, Bettina Groschel, Tanya R Blane, Sergey Menis, Jenny Tuyet Tran, Theresa C Thinnes, Sabrina A Volpi, Alessia Liguori, Torben Schiffner, Sophia M Villegas, Oleksandr Kalyuzhniy, Mark Pintea, James E Voss, Nicole Phelps, Ryan Tingle, Alberto R Rodriguez, Greg Martin, Sergey Kupryianov, Allan deCamp, William R Schief, David Nemazee, Shane CrottyProceedings Of The National Academy Of Sciences Of The United States Of America2020-09-01
Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers.David Heckmann, Anaamika Campeau, Colton J Lloyd, Patrick V Phaneuf, Ying Hefner, Marvic Carrillo-Terrazas, Adam M Feist, David J Gonzalez, Bernhard O PalssonProceedings Of The National Academy Of Sciences Of The United States Of America2020-09-01
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikApplied And Environmental Microbiology2020-09-01
Iron at the host-microbe interface.Romana R Gerner, Sean-Paul Nuccio, Manuela RaffatelluMolecular Aspects Of Medicine2020-09-01
Context-aware dimensionality reduction deconvolutes gut microbial community dynamics.Cameron Martino, Liat Shenhav, Clarisse A Marotz, George Armstrong, Daniel McDonald, Yoshiki Vázquez-Baeza, James T Morton, Lingjing Jiang, Maria Gloria Dominguez-Bello, Austin D Swafford, Eran Halperin, Rob KnightNature Biotechnology2020-08-31
Exercise Training Reverses Gut Dysbiosis in Patients With Biopsy-Proven Nonalcoholic Steatohepatitis: A Proof of Concept Study.Alexa Hughes, Jessica Dahmus, Gloriany Rivas, Breianna Hummer, Jeremy R Chen See, Justin R Wright, Regina Lamendella, Kathryn H Schmitz, Christopher Sciamanna, Mack Ruffin, Andrew D Patterson, Rohit Loomba, Jonathan G StineClinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association2020-08-31
Quantitative profiling of built environment bacterial and fungal communities reveals dynamic material dependent growth patterns and microbial interactions.Ying Xu, Ruby Tandon, Chrislyn Ancheta, Pablo Arroyo, Jack A Gilbert, Brent Stephens, Scott T KelleyIndoor Air2020-08-28
Multifaceted Effects of Antigen Valency on B Cell Response Composition and Differentiation In Vivo.Yu Kato, Robert K Abbott, Brian L Freeman, Sonya Haupt, Bettina Groschel, Murillo Silva, Sergey Menis, Darrell J Irvine, William R Schief, Shane CrottyImmunity2020-08-27
Association of Body Mass Index with Fecal Microbial Diversity and Metabolites in the Northern Finland Birth Cohort.Erikka Loftfield, Karl-Heinz Herzig, J Gregory Caporaso, Andriy Derkach, Yunhu Wan, Doratha A Byrd, Emily Vogtmann, Minna Männikkö, Ville Karhunen, Rob Knight, Marc J Gunter, Marjo-Riitta Järvelin, Rashmi SinhaCancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology2020-08-27
HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers.Shuling Ren, Daria A Gaykalova, Theresa Guo, Alexander V Favorov, Elana J Fertig, Pablo Tamayo, Juan Luis Callejas-Valera, Mike Allevato, Mara Gilardi, Jessica Santos, Takahito Fukusumi, Akihiro Sakai, Mizuo Ando, Sayed Sadat, Chao Liu, Guorong Xu, Kathleen M Fisch, Zhiyong Wang, Alfredo A Molinolo, J Silvio Gutkind, Trey Ideker, Wayne M Koch, Joseph A CalifanoOncogene2020-08-26
Multidimensional Proteome Profiling of Blood-Brain Barrier Perturbation by Group B .Anaamika Campeau, Robert H Mills, Marie Blanchette, Kaja Bajc, Mario Malfavon, Roeben N Munji, Liwen Deng, Bryan Hancock, Kathryn A Patras, Joshua Olson, Victor Nizet, Richard Daneman, Kelly Doran, David J GonzalezMSystems2020-08-25
Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy.Andrew Oliver, Brandon LaMere, Claudia Weihe, Stephen Wandro, Karen L Lindsay, Pathik D Wadhwa, David A Mills, David T Pride, Oliver Fiehn, Trent Northen, Markus de Raad, Huiying Li, Jennifer B H Martiny, Susan Lynch, Katrine WhitesonMBio2020-08-25
The Southern Bluefin Tuna Mucosal Microbiome Is Influenced by Husbandry Method, Net Pen Location, and Anti-parasite Treatment.Jeremiah J Minich, Cecilia Power, Michaela Melanson, Rob Knight, Claire Webber, Kirsten Rough, Nathan J Bott, Barbara Nowak, Eric E AllenFrontiers In Microbiology2020-08-24
Fructose stimulated de novo lipogenesis is promoted by inflammation.Jelena Todoric, Giuseppe Di Caro, Saskia Reibe, Darren C Henstridge, Courtney R Green, Alison Vrbanac, Fatih Ceteci, Claire Conche, Reginald McNulty, Shabnam Shalapour, Koji Taniguchi, Peter J Meikle, Jeramie D Watrous, Rafael Moranchel, Mahan Najhawan, Mohit Jain, Xiao Liu, Tatiana Kisseleva, Maria T Diaz-Meco, Jorge Moscat, Rob Knight, Florian R Greten, Lester F Lau, Christian M Metallo, Mark A Febbraio, Michael KarinNature Metabolism2020-08-24
Feature-based molecular networking in the GNPS analysis environment.Louis-Félix Nothias, Daniel Petras, Robin Schmid, Kai Dührkop, Johannes Rainer, Abinesh Sarvepalli, Ivan Protsyuk, Madeleine Ernst, Hiroshi Tsugawa, Markus Fleischauer, Fabian Aicheler, Alexander A Aksenov, Oliver Alka, Pierre-Marie Allard, Aiko Barsch, Xavier Cachet, Andres Mauricio Caraballo-Rodriguez, Ricardo R Da Silva, Tam Dang, Neha Garg, Julia M Gauglitz, Alexey Gurevich, Giorgis Isaac, Alan K Jarmusch, Zdeněk Kameník, Kyo Bin Kang, Nikolas Kessler, Irina Koester, Ansgar Korf, Audrey Le Gouellec, Marcus Ludwig, Christian Martin H, Laura-Isobel McCall, Jonathan McSayles, Sven W Meyer, Hosein Mohimani, Mustafa Morsy, Oriane Moyne, Steffen Neumann, Heiko Neuweger, Ngoc Hung Nguyen, Melissa Nothias-Esposito, Julien Paolini, Vanessa V Phelan, Tomáš Pluskal, Robert A Quinn, Simon Rogers, Bindesh Shrestha, Anupriya Tripathi, Justin J J van der Hooft, Fernando Vargas, Kelly C Weldon, Michael Witting, Heejung Yang, Zheng Zhang, Florian Zubeil, Oliver Kohlbacher, Sebastian Böcker, Theodore Alexandrov, Nuno Bandeira, Mingxun Wang, Pieter C DorresteinNature Methods2020-08-24
Evaluation for SARS-CoV-2 in Breast Milk From 18 Infected Women.Christina Chambers, Paul Krogstad, Kerri Bertrand, Deisy Contreras, Nicole H Tobin, Lars Bode, Grace AldrovandiJAMA2020-08-22
Sustained attention and vigilance deficits associated with HIV and a history of methamphetamine dependence.Nina Pocuca, Jared W Young, David A MacQueen, Scott Letendre, Robert K Heaton, Mark A Geyer, William Perry, Igor Grant, Arpi Minassian, Drug And Alcohol Dependence2020-08-22
Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates.Joana Damas, Graham M Hughes, Kathleen C Keough, Corrie A Painter, Nicole S Persky, Marco Corbo, Michael Hiller, Klaus-Peter Koepfli, Andreas R Pfenning, Huabin Zhao, Diane P Genereux, Ross Swofford, Katherine S Pollard, Oliver A Ryder, Martin T Nweeia, Kerstin Lindblad-Toh, Emma C Teeling, Elinor K Karlsson, Harris A LewinProceedings Of The National Academy Of Sciences Of The United States Of America2020-08-21
Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment.Jeremiah Minich, Farhana Ali, Clarisse Marotz, Pedro Belda-Ferre, Leslie Chiang, Justin P Shaffer, Carolina S Carpenter, Daniel McDonald, Jack Gilbert, Sarah M Allard, Eric E Allen, Rob Knight, Daniel A Sweeney, Austin D SwaffordResearch Square2020-08-18
Microbe-Metabolite Associations Linked to the Rebounding Murine Gut Microbiome Postcolonization with Vancomycin-Resistant Enterococcus faecium.Andre Mu, Glen P Carter, Lucy Li, Nicole S Isles, Alison F Vrbanac, James T Morton, Alan K Jarmusch, David P De Souza, Vinod K Narayana, Komal Kanojia, Brunda Nijagal, Malcolm J McConville, Rob Knight, Benjamin P Howden, Timothy P StinearMSystems2020-08-18
N-glycolyl chondroitin synthesis using metabolically engineered E. coli.Adeola E Awofiranye, Sultan N Baytas, Ke Xia, Abinaya Badri, Wenqin He, Ajit Varki, Mattheos Koffas, Robert J LinhardtAMB Express2020-08-17
ReDU: a framework to find and reanalyze public mass spectrometry data.Alan K Jarmusch, Mingxun Wang, Christine M Aceves, Rohit S Advani, Shaden Aguirre, Alexander A Aksenov, Gajender Aleti, Allegra T Aron, Anelize Bauermeister, Sanjana Bolleddu, Amina Bouslimani, Andres Mauricio Caraballo Rodriguez, Rama Chaar, Roxana Coras, Emmanuel O Elijah, Madeleine Ernst, Julia M Gauglitz, Emily C Gentry, Makhai Husband, Scott A Jarmusch, Kenneth L Jones, Zdenek Kamenik, Audrey Le Gouellec, Aileen Lu, Laura-Isobel McCall, Kerry L McPhail, Michael J Meehan, Alexey V Melnik, Riya C Menezes, Yessica Alejandra Montoya Giraldo, Ngoc Hung Nguyen, Louis Felix Nothias, Mélissa Nothias-Esposito, Morgan Panitchpakdi, Daniel Petras, Robert A Quinn, Nicole Sikora, Justin J J van der Hooft, Fernando Vargas, Alison Vrbanac, Kelly C Weldon, Rob Knight, Nuno Bandeira, Pieter C DorresteinNature Methods2020-08-17
Ur-ine Old Age: Urinary Microbiome of Older Community Dwelling Women.Alan J Wolfe, Linda BrubakerCell Host & Microbe2020-08-14
Vaginal estrogen therapy is associated with increased Lactobacillus in the urine of postmenopausal women with overactive bladder symptoms.Krystal Thomas-White, Susanne Taege, Roberto Limeira, Cynthia Brincat, Cara Joyce, Evann E Hilt, Laura Mac-Daniel, Katherine A Radek, Linda Brubaker, Elizabeth R Mueller, Alan J WolfeAmerican Journal Of Obstetrics And Gynecology2020-08-11
Genome-Scale Metabolic Model of pv. : An Approach to Elucidate Pathogenicity at the Metabolic Level.David Botero, Jonathan Monk, María Juliana Rodríguez Cubillos, Andrés Rodríguez Cubillos, Mariana Restrepo, Vivian Bernal-Galeano, Alejandro Reyes, Andrés González Barrios, Bernhard Ø Palsson, Silvia Restrepo, Adriana BernalFrontiers In Genetics2020-08-11
System-level understanding of gene expression and regulation for engineering secondary metabolite production in Streptomyces.Yongjae Lee, Namil Lee, Soonkyu Hwang, Kangsan Kim, Woori Kim, Jihun Kim, Suhyung Cho, Bernhard O Palsson, Byung-Kwan ChoJournal Of Industrial Microbiology & Biotechnology2020-08-10
Synthetic cross-phyla gene replacement and evolutionary assimilation of major enzymes.Troy E Sandberg, Richard Szubin, Patrick V Phaneuf, Bernhard O PalssonNature Ecology & Evolution2020-08-10
No Evidence of SARS-CoV-2 Seminal Shedding Despite SARS-CoV-2 Persistence in the Upper Respiratory Tract.Stephen A Rawlings, Caroline Ignacio, Magali Porrachia, Pinyi Du, Davey M Smith, Antoine ChaillonOpen Forum Infectious Diseases2020-08-07
Active Microneedle Administration of Plant Virus Nanoparticles for Cancer Vaccination Improves Immunotherapeutic Efficacy.Christine E Boone, Chao Wang, Miguel Angel Lopez-Ramirez, Veronique Beiss, Sourabh Shukla, Paul L Chariou, Daniel Kupor, Ricardo Rueda, Joseph Wang, Nicole F SteinmetzACS Applied Nano Materials2020-08-07
Targeting HIV Env immunogens to B cell follicles in nonhuman primates through immune complex or protein nanoparticle formulations.Jacob T Martin, Christopher A Cottrell, Aleksandar Antanasijevic, Diane G Carnathan, Benjamin J Cossette, Chiamaka A Enemuo, Etse H Gebru, Yury Choe, Federico Viviano, Stephanie Fischinger, Talar Tokatlian, Kimberly M Cirelli, George Ueda, Jeffrey Copps, Torben Schiffner, Sergey Menis, Galit Alter, William R Schief, Shane Crotty, Neil P King, David Baker, Guido Silvestri, Andrew B Ward, Darrell J IrvineNPJ Vaccines2020-08-05
Targeting HIV Env immunogens to B cell follicles in nonhuman primates through immune complex or protein nanoparticle formulations.Jacob T Martin, Christopher A Cottrell, Aleksandar Antanasijevic, Diane G Carnathan, Benjamin J Cossette, Chiamaka A Enemuo, Etse H Gebru, Yury Choe, Federico Viviano, Stephanie Fischinger, Talar Tokatlian, Kimberly M Cirelli, George Ueda, Jeffrey Copps, Torben Schiffner, Sergey Menis, Galit Alter, William R Schief, Shane Crotty, Neil P King, David Baker, Guido Silvestri, Andrew B Ward, Darrell J IrvineNPJ Vaccines2020-08-05
Cutaneous innate immune tolerance is mediated by epigenetic control of MAP2K3 by HDAC8/9.Yu Sawada, Teruaki Nakatsuji, Tatsuya Dokoshi, Nikhil Nitin Kulkarni, Marc C Liggins, George Sen, Richard L GalloScience Immunology2020-08-05
Selective and cross-reactive SARS-CoV-2 T cell epitopes in unexposed humans.Jose Mateus, Alba Grifoni, Alison Tarke, John Sidney, Sydney I Ramirez, Jennifer M Dan, Zoe C Burger, Stephen A Rawlings, Davey M Smith, Elizabeth Phillips, Simon Mallal, Marshall Lammers, Paul Rubiro, Lorenzo Quiambao, Aaron Sutherland, Esther Dawen Yu, Ricardo da Silva Antunes, Jason Greenbaum, April Frazier, Alena J Markmann, Lakshmanane Premkumar, Aravinda de Silva, Bjoern Peters, Shane Crotty, Alessandro Sette, Daniela WeiskopfScience (New York, N.Y.)2020-08-04
Linking metabolic phenotypes to pathogenic traits among "Candidatus Liberibacter asiaticus" and its hosts.Cristal Zuñiga, Beth Peacock, Bo Liang, Greg McCollum, Sonia C Irigoyen, Diego Tec-Campos, Clarisse Marotz, Nien-Chen Weng, Alejandro Zepeda, Georgios Vidalakis, Kranthi K Mandadi, James Borneman, Karsten ZenglerNPJ Systems Biology And Applications2020-08-04
Deficiency of Intestinal α1-2-Fucosylation Exacerbates Ethanol-Induced Liver Disease in Mice.Rongrong Zhou, Cristina Llorente, Jinling Cao, Bei Gao, Yi Duan, Lu Jiang, Yanhan Wang, Vipin Kumar, Peter Stärkel, Lars Bode, Xuegong Fan, Bernd SchnablAlcoholism, Clinical And Experimental Research2020-08-02
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikMicrobiology Spectrum2020-08-02
Women Physicians and the COVID-19 Pandemic.Linda BrubakerJAMA2020-08-01
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikJournal Of Microbiology & Biology Education2020-07-31
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikMSystems2020-07-31
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikMSphere2020-07-31
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikMicrobiology And Molecular Biology Reviews : MMBR2020-07-31
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikMBio2020-07-31
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikMicrobiology Resource Announcements2020-07-31
The ASM Journals Committee Values the Contributions of Black Microbiologists.Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J KozikClinical Microbiology Reviews2020-07-31
Synthetic microbial communities of heterotrophs and phototrophs facilitate sustainable growth.Cristal Zuñiga, Tingting Li, Michael T Guarnieri, Jackson P Jenkins, Chien-Ting Li, Kerem Bingol, Young-Mo Kim, Michael J Betenbaugh, Karsten ZenglerNature Communications2020-07-30
Microbiome and Metagenome Analyses of a Closed Habitat during Human Occupation.Ganesh Babu Malli Mohan, Ceth W Parker, Camilla Urbaniak, Nitin K Singh, Anthony Hood, Jeremiah J Minich, Rob Knight, Michelle Rucker, Kasthuri VenkateswaranMSystems2020-07-28
Marine microbial natural products: the evolution of a new field of science.William Bill FenicalThe Journal Of Antibiotics2020-07-27
Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity.Patrick V Phaneuf, James T Yurkovich, David Heckmann, Muyao Wu, Troy E Sandberg, Zachary A King, Justin Tan, Bernhard O Palsson, Adam M FeistBMC Genomics2020-07-25
MicroRNAs and Their Targetomes in Tumor-Immune Communication.Sunglim Cho, Jesse W Tai, Li-Fan LuCancers2020-07-24
Six novel species of the obligate marine actinobacterium , sp. nov., sp. nov., sp. nov., sp. nov., sp. nov. and sp. nov., and emended description of the genus .Brenda Román-Ponce, Natalie Millán-Aguiñaga, Dulce Guillen-Matus, Alexander B Chase, Joape G M Ginigini, Katy Soapi, Klaus D Feussner, Paul R Jensen, Martha E TrujilloInternational Journal Of Systematic And Evolutionary Microbiology2020-07-23
Facing the Change Together: Reflections of Coping and Resilience From American Geriatric Psychiatrists During COVID-19.Carmen Black Parker, Malcolm P Forbes, Ipsit V Vahia, Brent P Forester, Dilip V Jeste, Charles F ReynoldsThe American Journal Of Geriatric Psychiatry : Official Journal Of The American Association For Geriatric Psychiatry2020-07-23
Facing the change together: reflections of coping and resilience from American geriatric psychiatrists during COVID-19.Carmen Black Parker, Malcolm P Forbes, Ipsit V Vahia, Brent P Forester, Dilip V Jeste, Charles F ReynoldsInternational Psychogeriatrics2020-07-23
Biomarkers for the Discrimination of Acute Kawasaki Disease From Infections in Childhood.Judith Zandstra, Annemarie van de Geer, Michael W T Tanck, Diana van Stijn-Bringas Dimitriades, Cathelijn E M Aarts, Sanne M Dietz, Robin van Bruggen, Nina A Schweintzger, Werner Zenz, Marieke Emonts, Dace Zavadska, Marko Pokorn, Effua Usuf, Henriette A Moll, Luregn J Schlapbach, Enitan D Carrol, Stephane Paulus, Maria Tsolia, Colin Fink, Shunmay Yeung, Chisato Shimizu, Adriana Tremoulet, Rachel Galassini, Victoria J Wright, Federico Martinón-Torres, Jethro Herberg, Jane Burns, Michael Levin, Taco W Kuijpers, Frontiers In Pediatrics2020-07-22
Independent component analysis of E. coli's transcriptome reveals the cellular processes that respond to heterologous gene expression.Justin Tan, Anand V Sastry, Karoline S Fremming, Sara P Bjørn, Alexandra Hoffmeyer, Sangwoo Seo, Bjørn G Voldborg, Bernhard O PalssonMetabolic Engineering2020-07-22
Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals.Joonatan Palmu, Aaro Salosensaari, Aki S Havulinna, Susan Cheng, Michael Inouye, Mohit Jain, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Erkki Vartiainen, Tiina Laatikainen, Pekka Jousilahti, Veikko Salomaa, Rob Knight, Leo Lahti, Teemu J NiiranenJournal Of The American Heart Association2020-07-21
Virulence as a Side Effect of Interspecies Interaction in Coral Pathogens.Esther Rubio-Portillo, Ana B Martin-Cuadrado, Andrés M Caraballo-Rodríguez, Forest Rohwer, Pieter C Dorrestein, Josefa AntónMBio2020-07-21
T4 Pili Promote Colonization and Immune Evasion Phenotypes of Nonencapsulated M4 Streptococcus pyogenes.Yi-Hsuan Chen, Shao-Hui Li, Yao-Cheng Yang, Shu-Hao Hsu, Victor Nizet, Yung-Chi ChangMBio2020-07-21
Changes in the fecal bacterial microbiota associated with disease severity in alcoholic hepatitis patients.Sonja Lang, Bradley Fairfied, Bei Gao, Yi Duan, Xinlian Zhang, Derrick E Fouts, Bernd SchnablGut Microbes2020-07-20
Antibiotics and Innate Immunity: A Cooperative Effort Toward the Successful Treatment of Infections.Andrew Berti, Warren Rose, Victor Nizet, George SakoulasOpen Forum Infectious Diseases2020-07-20
In Reply: Navigating personal risk in rhinologic surgery during the COVID-19 pandemic.Adam S DeConde, Carol H Yan, Robert P DeCondeInternational Forum Of Allergy & Rhinology2020-07-19
Pathogen Interference: Targeting Virulence Factors to Tackle Intracellular Microbes.Michael H Lee, Sean-Paul Nuccio, Manuela RaffatelluCell Chemical Biology2020-07-18
Evolutionary stalling and a limit on the power of natural selection to improve a cellular module.Sandeep Venkataram, Ross Monasky, Shohreh H Sikaroodi, Sergey Kryazhimskiy, Betul KacarProceedings Of The National Academy Of Sciences Of The United States Of America2020-07-17
Transcriptomic Profiling Identifies Novel Hepatic and Intestinal Genes Following Chronic Plus Binge Ethanol Feeding in Mice.Lu Jiang, Huikuan Chu, Bei Gao, Sonja Lang, Yanhan Wang, Yi Duan, Bernd SchnablDigestive Diseases And Sciences2020-07-15
Redefining fundamental concepts of transcription initiation in bacteria.Citlalli Mejía-Almonte, Stephen J W Busby, Joseph T Wade, Jacques van Helden, Adam P Arkin, Gary D Stormo, Karen Eilbeck, Bernhard O Palsson, James E Galagan, Julio Collado-VidesNature Reviews. Genetics2020-07-14
Telomere-to-telomere assembly of a complete human X chromosome.Karen H Miga, Sergey Koren, Arang Rhie, Mitchell R Vollger, Ariel Gershman, Andrey Bzikadze, Shelise Brooks, Edmund Howe, David Porubsky, Glennis A Logsdon, Valerie A Schneider, Tamara Potapova, Jonathan Wood, William Chow, Joel Armstrong, Jeanne Fredrickson, Evgenia Pak, Kristof Tigyi, Milinn Kremitzki, Christopher Markovic, Valerie Maduro, Amalia Dutra, Gerard G Bouffard, Alexander M Chang, Nancy F Hansen, Amy B Wilfert, Françoise Thibaud-Nissen, Anthony D Schmitt, Jon-Matthew Belton, Siddarth Selvaraj, Megan Y Dennis, Daniela C Soto, Ruta Sahasrabudhe, Gulhan Kaya, Josh Quick, Nicholas J Loman, Nadine Holmes, Matthew Loose, Urvashi Surti, Rosa Ana Risques, Tina A Graves Lindsay, Robert Fulton, Ira Hall, Benedict Paten, Kerstin Howe, Winston Timp, Alice Young, James C Mullikin, Pavel A Pevzner, Jennifer L Gerton, Beth A Sullivan, Evan E Eichler, Adam M PhillippyNature2020-07-14
Shaping an Endospore: Architectural Transformations During Sporulation.Kanika Khanna, Javier Lopez-Garrido, Kit PoglianoAnnual Review Of Microbiology2020-07-13
Breastmilk Feeding Practices Are Associated with the Co-Occurrence of Bacteria in Mothers' Milk and the Infant Gut: the CHILD Cohort Study.Kelsey Fehr, Shirin Moossavi, Hind Sbihi, Rozlyn C T Boutin, Lars Bode, Bianca Robertson, Chloe Yonemitsu, Catherine J Field, Allan B Becker, Piushkumar J Mandhane, Malcolm R Sears, Ehsan Khafipour, Theo J Moraes, Padmaja Subbarao, B Brett Finlay, Stuart E Turvey, Meghan B AzadCell Host & Microbe2020-07-10
Metagenome Data on Intestinal Phage-Bacteria Associations Aids the Development of Phage Therapy against Pathobionts.Kosuke Fujimoto, Yasumasa Kimura, Masaki Shimohigoshi, Takeshi Satoh, Shintaro Sato, Georg Tremmel, Miho Uematsu, Yunosuke Kawaguchi, Yuki Usui, Yoshiko Nakano, Tetsuya Hayashi, Koji Kashima, Yoshikazu Yuki, Kiyoshi Yamaguchi, Yoichi Furukawa, Masanori Kakuta, Yutaka Akiyama, Rui Yamaguchi, Sheila E Crowe, Peter B Ernst, Satoru Miyano, Hiroshi Kiyono, Seiya Imoto, Satoshi UematsuCell Host & Microbe2020-07-10
Pre-existing immunity to SARS-CoV-2: the knowns and unknowns.Alessandro Sette, Shane CrottyNature Reviews. Immunology2020-07-09
Intestinal Virome Signature Associated With Severity of Nonalcoholic Fatty Liver Disease.Sonja Lang, Münevver Demir, Anna Martin, Lu Jiang, Xinlian Zhang, Yi Duan, Bei Gao, Hilmar Wisplinghoff, Philipp Kasper, Christoph Roderburg, Frank Tacke, Hans-Michael Steffen, Tobias Goeser, Juan G Abraldes, Xin M Tu, Rohit Loomba, Peter Stärkel, David Pride, Derrick E Fouts, Bernd SchnablGastroenterology2020-07-09
Impact of insertion sequences on convergent evolution of Shigella species.Jane Hawkey, Jonathan M Monk, Helen Billman-Jacobe, Bernhard Palsson, Kathryn E HoltPLoS Genetics2020-07-09
Daptomycin for Pediatric Gram-Positive Acute Hematogenous Osteomyelitis.John S Bradley, Antonio C Arrieta, Valeri A Digtyar, Myra W Popejoy, Anjana Grandhi, Paula Bokesch, Ellie Hershberger, Mary Beth Dorr, Christopher M Tan, Yoshihiko Murata, Dominik J Wolf, Mekki BensaciThe Pediatric Infectious Disease Journal2020-07-09
Microbial Products and Metabolites Contributing to Alcohol-Related Liver Disease.Bei Gao, Atoosa Emami, Shilpa Nath, Bernd SchnablMolecular Nutrition & Food Research2020-07-07
Site-Directed Mutagenesis of Large Biosynthetic Gene Clusters Oligonucleotide Recombineering and CRISPR/Cas9 Targeting.Jia Jia Zhang, Bradley S MooreACS Synthetic Biology2020-07-06
Distance, diffusion and the role of social media in a time of COVID contagion.Sara Moukarzel, Miguel Del Fresno, Lars Bode, Alan J DalyMaternal & Child Nutrition2020-07-06
Repurposed drugs block toxin-driven platelet clearance by the hepatic Ashwell-Morell receptor to clear bacteremia.Josh Sun, Satoshi Uchiyama, Joshua Olson, Yosuke Morodomi, Ingrid Cornax, Nao Ando, Yohei Kohno, May M T Kyaw, Bernice Aguilar, Nina M Haste, Sachiko Kanaji, Taisuke Kanaji, Warren E Rose, George Sakoulas, Jamey D Marth, Victor NizetScience Translational Medicine2020-07-05
Staphylococcus epidermidis protease EcpA can be a deleterious component of the skin microbiome in atopic dermatitis.Laura Cau, Michael R Williams, Anna M Butcher, Teruaki Nakatsuji, Jeffrey S Kavanaugh, Joyce Y Cheng, Faiza Shafiq, Kyle Higbee, Tissa R Hata, Alexander R Horswill, Richard L GalloThe Journal Of Allergy And Clinical Immunology2020-07-04
Detection of Neisseria gonorrhoeae from Joint Aspirate by Metagenomic Sequencing in Disseminated Gonococcal Infection.Betial Asmerom, Ian Drobish, Britanny Winckler, Leslie Chiang, Lauge Farnaes, Julia Beauchamp-Walters, John S Bradley, Nanda RamchandarJournal Of The Pediatric Infectious Diseases Society2020-07-03
Revealing 29 sets of independently modulated genes in , their regulators, and role in key physiological response.Saugat Poudel, Hannah Tsunemoto, Yara Seif, Anand V Sastry, Richard Szubin, Sibei Xu, Henrique Machado, Connor A Olson, Amitesh Anand, Joe Pogliano, Victor Nizet, Bernhard O PalssonProceedings Of The National Academy Of Sciences Of The United States Of America2020-07-02
A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis.Tae Gyu Oh, Susy M Kim, Cyrielle Caussy, Ting Fu, Jian Guo, Shirin Bassirian, Seema Singh, Egbert V Madamba, Ricki Bettencourt, Lisa Richards, Ruth T Yu, Annette R Atkins, Tao Huan, David A Brenner, Claude B Sirlin, Michael Downes, Ronald M Evans, Rohit LoombaCell Metabolism2020-06-30
Reply.Ashraf S Harahsheh, Nagib Dahdah, Jane W Newburger, Michael A Portman, Robert Tulloh, Brian W McCrindle, Rolando Cimaz, Jane C BurnsThe Journal Of Pediatrics2020-06-30
Inflammation in Mental Disorders: Is the Microbiota the Missing Link?Sophie Ouabbou, Ying He, Keith Butler, Ming TsuangNeuroscience Bulletin2020-06-27
Translating gene drive science to promote linguistic diversity in community and stakeholder engagement.Cynthia Cheung, Stephanie Gamez, Rebeca Carballar-Lejarazú, Victor Ferman, Váleri N Vásquez, Gerard Terradas, Judy Ishikawa, Cynthia E Schairer, Ethan Bier, John M Marshall, Anthony A James, Omar S Akbari, Cinnamon S BlossGlobal Public Health2020-06-26
Synoviocyte-targeted therapy synergizes with TNF inhibition in arthritis reversal.Mattias N D Svensson, Martina Zoccheddu, Shen Yang, Gyrid Nygaard, Christian Secchi, Karen M Doody, Kamil Slowikowski, Fumitaka Mizoguchi, Frances Humby, Rebecca Hands, Eugenio Santelli, Cristiano Sacchetti, Kuninobu Wakabayashi, Dennis J Wu, Christopher Barback, Rizi Ai, Wei Wang, Gary P Sims, Piotr Mydel, Tsuyoshi Kasama, David L Boyle, Francesco Galimi, David Vera, Michel L Tremblay, Soumya Raychaudhuri, Michael B Brenner, Gary S Firestein, Costantino Pitzalis, Anna-Karin H Ekwall, Stephanie M Stanford, Nunzio BottiniScience Advances2020-06-26
Intestinal permeability, microbial translocation, changes in duodenal and fecal microbiota, and their associations with alcoholic liver disease progression in humans.Luca Maccioni, Bei Gao, Sophie Leclercq, Boris Pirlot, Yves Horsmans, Philippe De Timary, Isabelle Leclercq, Derrick Fouts, Bernd Schnabl, Peter StärkelGut Microbes2020-06-26
Sierra Nevada mountain lake microbial communities are structured by temperature, resources and geographic location.Marika A Schulhof, Andrew E Allen, Eric E Allen, Natalie Mladenov, John P McCrow, Natalie T Jones, Jessica Blanton, Hamanda B Cavalheri, Drishti Kaul, Celia C Symons, Jonathan B ShurinMolecular Ecology2020-06-24
In-Hospital Use of Statins Is Associated with a Reduced Risk of Mortality among Individuals with COVID-19.Xiao-Jing Zhang, Juan-Juan Qin, Xu Cheng, Lijun Shen, Yan-Ci Zhao, Yufeng Yuan, Fang Lei, Ming-Ming Chen, Huilin Yang, Liangjie Bai, Xiaohui Song, Lijin Lin, Meng Xia, Feng Zhou, Jianghua Zhou, Zhi-Gang She, Lihua Zhu, Xinliang Ma, Qingbo Xu, Ping Ye, Guohua Chen, Liming Liu, Weiming Mao, Youqin Yan, Bing Xiao, Zhigang Lu, Gang Peng, Mingyu Liu, Jun Yang, Luyu Yang, Changjiang Zhang, Haofeng Lu, Xigang Xia, Daihong Wang, Xiaofeng Liao, Xiang Wei, Bing-Hong Zhang, Xin Zhang, Juan Yang, Guang-Nian Zhao, Peng Zhang, Peter P Liu, Rohit Loomba, Yan-Xiao Ji, Jiahong Xia, Yibin Wang, Jingjing Cai, Jiao Guo, Hongliang LiCell Metabolism2020-06-24
A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes.Sheila Podell, Jessica M Blanton, Aaron Oliver, Michelle A Schorn, Vinayak Agarwal, Jason S Biggs, Bradley S Moore, Eric E AllenMicrobiome2020-06-23
High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy.Ruma Raghuvanshi, Karla Vasco, Yoshiki Vázquez-Baeza, Lingjing Jiang, James T Morton, Danxun Li, Antonio Gonzalez, Lindsay DeRight Goldasich, Gregory Humphrey, Gail Ackermann, Austin D Swafford, Douglas Conrad, Rob Knight, Pieter C Dorrestein, Robert A QuinnMSystems2020-06-23
Bcl-6 is the nexus transcription factor of T follicular helper cells via repressor-of-repressor circuits.Jinyong Choi, Huitian Diao, Caterina E Faliti, Jacquelyn Truong, Meghan Rossi, Simon Bélanger, Bingfei Yu, Ananda W Goldrath, Matthew E Pipkin, Shane CrottyNature Immunology2020-06-22
Rationale and design of the Kidney Precision Medicine Project.Ian H de Boer, Charles E Alpers, Evren U Azeloglu, Ulysses G J Balis, Jonathan M Barasch, Laura Barisoni, Kristina N Blank, Andrew S Bomback, Keith Brown, Pierre C Dagher, Ashveena L Dighe, Michael T Eadon, Tarek M El-Achkar, Joseph P Gaut, Nir Hacohen, Yongqun He, Jeffrey B Hodgin, Sanjay Jain, John A Kellum, Krzysztof Kiryluk, Richard Knight, Zoltan G Laszik, Chrysta Lienczewski, Laura H Mariani, Robyn L McClelland, Steven Menez, Dennis G Moledina, Sean D Mooney, John F O'Toole, Paul M Palevsky, Chirag R Parikh, Emilio D Poggio, Sylvia E Rosas, Matthew R Rosengart, Minnie M Sarwal, Jennifer A Schaub, John R Sedor, Kumar Sharma, Becky Steck, Robert D Toto, Olga G Troyanskaya, Katherine R Tuttle, Miguel A Vazquez, Sushrut S Waikar, Kayleen Williams, Francis Perry Wilson, Kun Zhang, Ravi Iyengar, Matthias Kretzler, Jonathan Himmelfarb, Kidney International2020-06-22
Fermentable fiber-induced hepatocellular carcinoma in mice recapitulates gene signatures found in human liver cancer.Darshan Shimoga Chandrashekar, Rachel M Golonka, Beng San Yeoh, David J Gonzalez, Mathias Heikenwälder, Andrew T Gerwirtz, Sooryanarayana Varambally, Matam Vijay-KumarPloS One2020-06-19
Functional Microbiomics Reveals Alterations of the Gut Microbiome and Host Co-Metabolism in Patients With Alcoholic Hepatitis.Bei Gao, Yi Duan, Sonja Lang, Dinesh Barupal, Tsung-Chin Wu, Luis Valdiviez, Bryan Roberts, Ying Yng Choy, Tong Shen, Gregory Byram, Ying Zhang, Sili Fan, Benjamin Wancewicz, Yan Shao, Kevin Vervier, Yanhan Wang, Rongrong Zhou, Lu Jiang, Shilpa Nath, Rohit Loomba, Juan G Abraldes, Ramon Bataller, Xin M Tu, Peter Stärkel, Trevor D Lawley, Oliver Fiehn, Bernd SchnablHepatology Communications2020-06-19
Modulating the quantity of HIV Env-specific CD4 T cell help promotes rare B cell responses in germinal centers.Jeong Hyun Lee, Joyce K Hu, Erik Georgeson, Catherine Nakao, Bettina Groschel, Thamotharampillai Dileepan, Marc K Jenkins, Gregory Seumois, Pandurangan Vijayanand, William R Schief, Shane CrottyThe Journal Of Experimental Medicine2020-06-17
Streptococcus pyogenes upregulates arginine catabolism to exert its pathogenesis on the skin surface.Yujiro Hirose, Masaya Yamaguchi, Tomoko Sumitomo, Masanobu Nakata, Tomoki Hanada, Daisuke Okuzaki, Daisuke Motooka, Yasushi Mori, Hiroshi Kawasaki, Alison Coady, Satoshi Uchiyama, Masanobu Hiraoka, Raymond H Zurich, Masayuki Amagai, Victor Nizet, Shigetada KawabataCell Reports2020-06-17
Harnessing Activin A Adjuvanticity to Promote Antibody Responses to BG505 HIV Envelope Trimers.Diane G Carnathan, Kirti Kaushik, Ali H Ellebedy, Chiamaka A Enemuo, Etse H Gebru, Pallavi Dhadvai, Mohammed Ata Ur Rasheed, Matthias G Pauthner, Gabriel Ozorowski, Rafi Ahmed, Dennis R Burton, Andrew B Ward, Guido Silvestri, Shane Crotty, Michela LocciFrontiers In Immunology2020-06-16
Evaluation of SARS-CoV-2 in Breastmilk from 18 Infected Women.Christina D Chambers, Paul Krogstad, Kerri Bertrand, Deisy Contreras, Nicole H Tobin, Lars Bode, Grace M AldrovandiMedRxiv : The Preprint Server For Health Sciences2020-06-16
Isolation of potent SARS-CoV-2 neutralizing antibodies and protection from disease in a small animal model.Thomas F Rogers, Fangzhu Zhao, Deli Huang, Nathan Beutler, Alison Burns, Wan-Ting He, Oliver Limbo, Chloe Smith, Ge Song, Jordan Woehl, Linlin Yang, Robert K Abbott, Sean Callaghan, Elijah Garcia, Jonathan Hurtado, Mara Parren, Linghang Peng, Sydney Ramirez, James Ricketts, Michael J Ricciardi, Stephen A Rawlings, Nicholas C Wu, Meng Yuan, Davey M Smith, David Nemazee, John R Teijaro, James E Voss, Ian A Wilson, Raiees Andrabi, Bryan Briney, Elise Landais, Devin Sok, Joseph G Jardine, Dennis R BurtonScience (New York, N.Y.)2020-06-15
Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information.Zhoutao Chen, Long Pham, Tsai-Chin Wu, Guoya Mo, Yu Xia, Peter L Chang, Devin Porter, Tan Phan, Huu Che, Hao Tran, Vikas Bansal, Justin Shaffer, Pedro Belda-Ferre, Greg Humphrey, Rob Knight, Pavel Pevzner, Son Pham, Yong Wang, Ming LeiGenome Research2020-06-15
CBASS Immunity Uses CARF-Related Effectors to Sense 3'-5'- and 2'-5'-Linked Cyclic Oligonucleotide Signals and Protect Bacteria from Phage Infection.Brianna Lowey, Aaron T Whiteley, Alexander F A Keszei, Benjamin R Morehouse, Ian T Mathews, Sadie P Antine, Victor J Cabrera, Dmitry Kashin, Percy Niemann, Mohit Jain, Frank Schwede, John J Mekalanos, Sichen Shao, Amy S Y Lee, Philip J KranzuschCell2020-06-15
The selective PPAR-delta agonist seladelpar reduces ethanol-induced liver disease by restoring gut barrier function and bile acid homeostasis in mice.Huikuan Chu, Lu Jiang, Bei Gao, Nagsen Gautam, Jawaher A Alamoudi, Sonja Lang, Yanhan Wang, Yi Duan, Yazen Alnouti, Edward E Cable, Bernd SchnablTranslational Research : The Journal Of Laboratory And Clinical Medicine2020-06-15
Shielding and Beyond: The Roles of Glycans in SARS-CoV-2 Spike Protein.Lorenzo Casalino, Zied Gaieb, Jory A Goldsmith, Christy K Hjorth, Abigail C Dommer, Aoife M Harbison, Carl A Fogarty, Emilia P Barros, Bryn C Taylor, Jason S McLellan, Elisa Fadda, Rommie E AmaroBioRxiv : The Preprint Server For Biology2020-06-11
Efficacy of Antigonococcal CMP-Nonulosonate Therapeutics Require Cathelicidins.Sunita Gulati, Ian C Schoenhofen, Theresa Lindhout-Djukic, Lisa A Lewis, Iesha Y Moustafa, Sudeshna Saha, Bo Zheng, Nancy Nowak, Peter A Rice, Ajit Varki, Sanjay RamThe Journal Of Infectious Diseases2020-06-10
Clinical Characteristics of 58 Children With a Pediatric Inflammatory Multisystem Syndrome Temporally Associated With SARS-CoV-2.Elizabeth Whittaker, Alasdair Bamford, Julia Kenny, Myrsini Kaforou, Christine E Jones, Priyen Shah, Padmanabhan Ramnarayan, Alain Fraisse, Owen Miller, Patrick Davies, Filip Kucera, Joe Brierley, Marilyn McDougall, Michael Carter, Adriana Tremoulet, Chisato Shimizu, Jethro Herberg, Jane C Burns, Hermione Lyall, Michael Levin, JAMA2020-06-09
Persistent Smell Loss Following Undetectable SARS-CoV-2.Carol H Yan, Divya P Prajapati, Michele L Ritter, Adam S DeCondeOtolaryngology--head And Neck Surgery : Official Journal Of American Academy Of Otolaryngology-Head And Neck Surgery2020-06-09
Bacterial communities associated with cell phones and shoes.David A Coil, Russell Y Neches, Jenna M Lang, Guillaume Jospin, Wendy E Brown, Darlene Cavalier, Jarrad Hampton-Marcell, Jack A Gilbert, Jonathan A EisenPeerJ2020-06-09
Spatial Compartmentalization of the Microbiome between the Lumen and Crypts Is Lost in the Murine Cecum following the Process of Surgery, Including Overnight Fasting and Exposure to Antibiotics.Alexander Zaborin, Beatriz Penalver Bernabe, Robert Keskey, Naseer Sangwan, Sanjiv Hyoju, Neil Gottel, Jack A Gilbert, Olga Zaborina, John C AlverdyMSystems2020-06-09
Reply to: Self-reported olfactory loss in COVID-19: is it really a favorable prognostic factor?Carol H Yan, Farhoud Faraji, Adam S DeCondeInternational Forum Of Allergy & Rhinology2020-06-08
Temporal variations in bacterial community diversity and composition throughout intensive care unit renovations.Jessica Chopyk, Kevan Akrami, Tovia Bavly, Ji H Shin, Leila K Schwanemann, Melissa Ly, Richa Kalia, Ying Xu, Scott T Kelley, Atul Malhotra, Francesca J Torriani, Daniel A Sweeney, David T PrideMicrobiome2020-06-08
Tuning the Innate Immune Response to Cyclic Dinucleotides by Using Atomic Mutagenesis.Yao Li, Andrea Fin, Alexander R Rovira, Yichi Su, Andrew B Dippel, Jonathan Andrés Valderrama, Angelica M Riestra, Victor Nizet, Ming C Hammond, Yitzhak TorChembiochem : A European Journal Of Chemical Biology2020-06-08
Self-reported olfactory loss associates with outpatient clinical course in COVID-19.Carol H Yan, Farhoud Faraji, Divya P Prajapati, Benjamin T Ostrander, Adam S DeCondeInternational Forum Of Allergy & Rhinology2020-06-07
Microbial Synthesis of Human-Hormone Melatonin at Gram Scales.Hao Luo, Konstantin Schneider, Ulla Christensen, Yang Lei, Markus Herrgard, Bernhard Ø PalssonACS Synthetic Biology2020-06-05
Human milk fungi: environmental determinants and inter-kingdom associations with milk bacteria in the CHILD Cohort Study.Shirin Moossavi, Kelsey Fehr, Hooman Derakhshani, Hind Sbihi, Bianca Robertson, Lars Bode, Jeffrey Brook, Stuart E Turvey, Theo J Moraes, Allan B Becker, Piushkumar J Mandhane, Malcolm R Sears, Ehsan Khafipour, Padmaja Subbarao, Meghan B AzadBMC Microbiology2020-06-05
Comparative Genomics Determines Strain-Dependent Secondary Metabolite Production in Strains.Woori Kim, Namil Lee, Soonkyu Hwang, Yongjae Lee, Jihun Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan ChoBiomolecules2020-06-05
Earth microbial co-occurrence network reveals interconnection pattern across microbiomes.Bin Ma, Yiling Wang, Shudi Ye, Shan Liu, Erinne Stirling, Jack A Gilbert, Karoline Faust, Rob Knight, Janet K Jansson, Cesar Cardona, Lisa Röttjers, Jianming XuMicrobiome2020-06-04
Paroxetine Administration Affects Microbiota and Bile Acid Levels in Mice.Frederik Dethloff, Fernando Vargas, Emmanuel Elijah, Robert Quinn, Dong Ik Park, David P Herzog, Marianne B Müller, Emily C Gentry, Rob Knight, Antonio Gonzalez, Pieter C Dorrestein, Christoph W TurckFrontiers In Psychiatry2020-06-04
Microbial Ecology of Atlantic Salmon (Salmo salar) Hatcheries: Impacts of the Built Environment on Fish Mucosal Microbiota.Jeremiah J Minich, Greg D Poore, Khattapan Jantawongsri, Colin Johnston, Kate Bowie, John Bowman, Rob Knight, Barbara Nowak, Eric E AllenApplied And Environmental Microbiology2020-06-02
Comparative Genomics and Metabolomics in the Genus .Daniel Männle, Shaun M K McKinnie, Shrikant S Mantri, Katharina Steinke, Zeyin Lu, Bradley S Moore, Nadine Ziemert, Leonard KaysserMSystems2020-06-02
Predicting COVID-19 Incidence Using Anosmia and Other COVID-19 Symptomatology: Preliminary Analysis Using Google and Twitter.Bharat A Panuganti, Aria Jafari, Bridget MacDonald, Adam S DeCondeOtolaryngology--head And Neck Surgery : Official Journal Of American Academy Of Otolaryngology-Head And Neck Surgery2020-06-02
Association of chemosensory dysfunction and COVID-19 in patients presenting with influenza-like symptoms.Carol H Yan, Farhoud Faraji, Divya P Prajapati, Christine E Boone, Adam S DeCondeInternational Forum Of Allergy & Rhinology2020-06-01
A multiomic analysis of in situ coral-turf algal interactions.Ty N F Roach, Mark Little, Milou G I Arts, Joel Huckeba, Andreas F Haas, Emma E George, Robert A Quinn, Ana G Cobián-Güemes, Douglas S Naliboff, Cynthia B Silveira, Mark J A Vermeij, Linda Wegley Kelly, Pieter C Dorrestein, Forest RohwerProceedings Of The National Academy Of Sciences Of The United States Of America2020-06-01
SARS-CoV-2 and human milk: What is the evidence?Kimberly A Lackey, Ryan M Pace, Janet E Williams, Lars Bode, Sharon M Donovan, Kirsi M Järvinen, Antti E Seppo, Daniel J Raiten, Courtney L Meehan, Mark A McGuire, Michelle K McGuireMaternal & Child Nutrition2020-05-30
Detecting personal microbiota signatures at artificial crime scenes.Jarrad T Hampton-Marcell, Peter Larsen, Tifani Anton, Lauren Cralle, Naseer Sangwan, Simon Lax, Neil Gottel, Mariana Salas-Garcia, Candace Young, George Duncan, Jose V Lopez, Jack A GilbertForensic Science International2020-05-30
Modeling of nitrogen fixation and polymer production in the heterotrophic diazotroph DJ.Diego Tec Campos, Cristal Zuñiga, Anurag Passi, John Del Toro, Juan D Tibocha-Bonilla, Alejandro Zepeda, Michael J Betenbaugh, Karsten ZenglerMetabolic Engineering Communications2020-05-30
Targeted Depletion of Bacteria from Mixed Populations by Programmable Adhesion with Antagonistic Competitor Cells.See-Yeun Ting, Esteban Martínez-García, Shuo Huang, Savannah K Bertolli, Katherine A Kelly, Kevin J Cutler, Elizabeth D Su, Hui Zhi, Qing Tang, Matthew C Radey, Manuela Raffatellu, S Brook Peterson, Víctor de Lorenzo, Joseph D MougousCell Host & Microbe2020-05-28
Developmental Immaturity of Siglec Receptor Expression on Neonatal Alveolar Macrophages Predisposes to Severe Group B Streptococcal Infection.Sean J Lund, Kathryn A Patras, Jacqueline M Kimmey, Asami Yamamura, Lindsay D Butcher, Pamela G B Del Rosario, Gilberto E Hernandez, Alyssa M McCoy, Omar Lakhdari, Victor Nizet, Lawrence S PrinceIScience2020-05-28
Permissive microbiome characterizes human subjects with a neurovascular disease cavernous angioma.Sean P Polster, Anukriti Sharma, Ceylan Tanes, Alan T Tang, Patricia Mericko, Ying Cao, Julián Carrión-Penagos, Romuald Girard, Janne Koskimäki, Dongdong Zhang, Agnieszka Stadnik, Sharbel G Romanos, Seán B Lyne, Robert Shenkar, Kimberly Yan, Cornelia Lee, Amy Akers, Leslie Morrison, Myranda Robinson, Atif Zafar, Kyle Bittinger, Helen Kim, Jack A Gilbert, Mark L Kahn, Le Shen, Issam A AwadNature Communications2020-05-27
Reducing transmission of SARS-CoV-2.Kimberly A Prather, Chia C Wang, Robert T SchooleyScience (New York, N.Y.)2020-05-27
Improving Quantitative Power in Digital PCR through Digital High-Resolution Melting.April Aralar, Yixu Yuan, Kevin Chen, Yunshu Geng, Daniel Ortiz Velez, Mridu Sinha, Shelley M Lawrence, Stephanie I FraleyJournal Of Clinical Microbiology2020-05-26
A biochemically-interpretable machine learning classifier for microbial GWAS.Erol S Kavvas, Laurence Yang, Jonathan M Monk, David Heckmann, Bernhard O PalssonNature Communications2020-05-22
A genetic interaction map centered on cohesin reveals auxiliary factors involved in sister chromatid cohesion in .Su Ming Sun, Amandine Batté, Mireille Elmer, Sophie C van der Horst, Tibor van Welsem, Gordon Bean, Trey Ideker, Fred van Leeuwen, Haico van AttikumJournal Of Cell Science2020-05-22
Interfacing gene circuits with microelectronics through engineered population dynamics.M Omar Din, Aida Martin, Ivan Razinkov, Nicholas Csicsery, Jeff HastyScience Advances2020-05-22
All major cholesterol-dependent cytolysins use glycans as cellular receptors.Lucy K Shewell, Christopher J Day, Freda E-C Jen, Thomas Haselhorst, John M Atack, Josephine F Reijneveld, Arun Everest-Dass, David B A James, Kristina M Boguslawski, Stephan Brouwer, Christine M Gillen, Zhenyao Luo, Bostjan Kobe, Victor Nizet, Mark von Itzstein, Mark J Walker, Adrienne W Paton, James C Paton, Victor J Torres, Michael P JenningsScience Advances2020-05-22
Depletion of the Microbiome Alters the Recruitment of Neuronal Ensembles of Oxycodone Intoxication and Withdrawal.Sierra Simpson, Adam Kimbrough, Brent Boomhower, Rio McLellan, Marcella Hughes, Kokila Shankar, Giordano de Guglielmo, Olivier GeorgeENeuro2020-05-21
Engineering of multiple trypsin/chymotrypsin sites in Cry3A to enhance its activity against Monochamus alternatus Hope larvae.Yajie Guo, Yafang Wang, Anthony J O'Donoghue, Zhenze Jiang, Rebeca Carballar-Lejarazú, Guanghong Liang, Xia Hu, Rong Wang, Lei Xu, Xiong Guan, Feiping Zhang, Songqing WuPest Management Science2020-05-20
Temporal, Environmental, and Biological Drivers of the Mucosal Microbiome in a Wild Marine Fish, Scomber japonicus.Jeremiah J Minich, Semar Petrus, Julius D Michael, Todd P Michael, Rob Knight, Eric E AllenMSphere2020-05-20
Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals.Alba Grifoni, Daniela Weiskopf, Sydney I Ramirez, Jose Mateus, Jennifer M Dan, Carolyn Rydyznski Moderbacher, Stephen A Rawlings, Aaron Sutherland, Lakshmanane Premkumar, Ramesh S Jadi, Daniel Marrama, Aravinda M de Silva, April Frazier, Aaron F Carlin, Jason A Greenbaum, Bjoern Peters, Florian Krammer, Davey M Smith, Shane Crotty, Alessandro SetteCell2020-05-20
An anti-inflammatory isoflavone from soybean inoculated with a marine fungus C23-3.Jing-Ming Yang, Ya-Yue Liu, Wen-Cong Yang, Xiao-Xiang Ma, Ying-Ying Nie, Evgenia Glukhov, Lena Gerwick, William H Gerwick, Xiao-Ling Lei, Yi ZhangBioscience, Biotechnology, And Biochemistry2020-05-20
Therapeutic CMP-Nonulosonates against Multidrug-Resistant .Sunita Gulati, Ian C Schoenhofen, Theresa Lindhout-Djukic, Melissa J Schur, Corinna S Landig, Sudeshna Saha, Lingquan Deng, Lisa A Lewis, Bo Zheng, Ajit Varki, Sanjay RamJournal Of Immunology (Baltimore, Md. : 1950)2020-05-20
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.Francesco Asnicar, Andrew Maltez Thomas, Francesco Beghini, Claudia Mengoni, Serena Manara, Paolo Manghi, Qiyun Zhu, Mattia Bolzan, Fabio Cumbo, Uyen May, Jon G Sanders, Moreno Zolfo, Evguenia Kopylova, Edoardo Pasolli, Rob Knight, Siavash Mirarab, Curtis Huttenhower, Nicola SegataNature Communications2020-05-19
Opportunistic Invasive Infection by Group A Streptococcus During Anti-Interleukin-6 Immunotherapy.Shyra Wilde, Katherine L Olivares, Victor Nizet, Hal M Hoffman, Suhas Radhakrishna, Christopher N LaRockThe Journal Of Infectious Diseases2020-05-18
A Nitric Oxide-Releasing Topical Medication as a Potential Treatment Option for Atopic Dermatitis through Antimicrobial and Anti-Inflammatory Activity.Emma Guttman-Yassky, Richard L Gallo, Ana B Pavel, Teruaki Nakatsuji, Randall Li, Ning Zhang, Elizabeth Messersmith, Tomoko Maeda-ChubachiThe Journal Of Investigative Dermatology2020-05-16
Rapid isolation of potent SARS-CoV-2 neutralizing antibodies and protection in a small animal model.Thomas F Rogers, Fangzhu Zhao, Deli Huang, Nathan Beutler, Alison Burns, Wan-Ting He, Oliver Limbo, Chloe Smith, Ge Song, Jordan Woehl, Linlin Yang, Robert K Abbott, Sean Callaghan, Elijah Garcia, Jonathan Hurtado, Mara Parren, Linghang Peng, James Ricketts, Michael J Ricciardi, Stephen A Rawlings, Davey M Smith, David Nemazee, John R Teijaro, James E Voss, Raiees Andrabi, Bryan Briney, Elise Landais, Devin Sok, Joseph G Jardine, Dennis R BurtonBioRxiv : The Preprint Server For Biology2020-05-15
Key clinical research priorities for the pediatric community during the COVID-19 pandemic.Gary J Noel, Jonathan M Davis, Octavio Ramilo, John S Bradley, Edward ConnorPediatric Research2020-05-15
Author Correction: A Engineered immunogen binding to alum adjuvant enhances humoral immunity.Tyson J Moyer, Yu Kato, Wuhbet Abraham, Jason Y H Chang, Daniel W Kulp, Nicki Watson, Hannah L Turner, Sergey Menis, Robert K Abbott, Jinal N Bhiman, Mariane B Melo, Hayley A Simon, Sara Herrera-De la Mata, Shu Liang, Gregory Seumois, Yash Agarwal, Na Li, Dennis R Burton, Andrew B Ward, William R Schief, Shane Crotty, Darrell J IrvineNature Medicine2020-05-15
Dynamic resource allocation drives growth under nitrogen starvation in eukaryotes.Juan D Tibocha-Bonilla, Manish Kumar, Anne Richelle, Rubén D Godoy-Silva, Karsten Zengler, Cristal ZuñigaNPJ Systems Biology And Applications2020-05-15
Frequency of Dosing of Cephalexin for Oral Step-Down Therapy of Pediatric Osteoarticular Infections Caused by Methicillin-Sensitive Staphylococcus Aureus.Nanda Ramchandar, John Arnold, Chris Cannavino, John S BradleyThe Pediatric Infectious Disease Journal2020-05-14
Mersaquinone, A New Tetracene Derivative from the Marine-Derived sp. EG1 Exhibiting Activity against Methicillin-Resistant (MRSA).Min Cheol Kim, Reiko Cullum, Ali M S Hebishy, Hala A Mohamed, Ahmed H I Faraag, Nehad M Salah, Mohamed S Abdelfattah, William FenicalAntibiotics (Basel, Switzerland)2020-05-14
Reproducible molecular networking of untargeted mass spectrometry data using GNPS.Allegra T Aron, Emily C Gentry, Kerry L McPhail, Louis-Félix Nothias, Mélissa Nothias-Esposito, Amina Bouslimani, Daniel Petras, Julia M Gauglitz, Nicole Sikora, Fernando Vargas, Justin J J van der Hooft, Madeleine Ernst, Kyo Bin Kang, Christine M Aceves, Andrés Mauricio Caraballo-Rodríguez, Irina Koester, Kelly C Weldon, Samuel Bertrand, Catherine Roullier, Kunyang Sun, Richard M Tehan, Cristopher A Boya P, Martin H Christian, Marcelino Gutiérrez, Aldo Moreno Ulloa, Javier Andres Tejeda Mora, Randy Mojica-Flores, Johant Lakey-Beitia, Victor Vásquez-Chaves, Yilue Zhang, Angela I Calderón, Nicole Tayler, Robert A Keyzers, Fidele Tugizimana, Nombuso Ndlovu, Alexander A Aksenov, Alan K Jarmusch, Robin Schmid, Andrew W Truman, Nuno Bandeira, Mingxun Wang, Pieter C DorresteinNature Protocols2020-05-13
Presentation of the Julius M. Friedenwald Medal to Gail A. Hecht, MD, MS.David W Hecht, Kim E BarrettGastroenterology2020-05-11
T cell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers.Prabhu S Arunachalam, Tysheena P Charles, Vineet Joag, Venkata S Bollimpelli, Madeleine K D Scott, Florian Wimmers, Samantha L Burton, Celia C Labranche, Caroline Petitdemange, Sailaja Gangadhara, Tiffany M Styles, Clare F Quarnstrom, Korey A Walter, Thomas J Ketas, Traci Legere, Pradeep Babu Jagadeesh Reddy, Sudhir Pai Kasturi, Anthony Tsai, Bertrand Z Yeung, Shakti Gupta, Mark Tomai, John Vasilakos, George M Shaw, Chil-Yong Kang, John P Moore, Shankar Subramaniam, Purvesh Khatri, David Montefiori, Pamela A Kozlowski, Cynthia A Derdeyn, Eric Hunter, David Masopust, Rama R Amara, Bali PulendranNature Medicine2020-05-11
Exposure of to Environmental Stress and Clinically Used Antibiotics Reveals Common Proteome Response among Pathogenic Mycobacteria.Rajoana Rojony, Lia Danelishvili, Anaamika Campeau, Jacob M Wozniak, David J Gonzalez, Luiz E BermudezMicroorganisms2020-05-09
Sex-dependent associations between addiction-related behaviors and the microbiome in outbred rats.Veronica L Peterson, Jerry B Richards, Paul J Meyer, Raul Cabrera-Rubio, Jordan A Tripi, Christopher P King, Oksana Polesskaya, Amelie Baud, Apurva S Chitre, Thomaz F S Bastiaanssen, Leah Solberg Woods, Fiona Crispie, Timothy G Dinan, Paul D Cotter, Abraham A Palmer, John F CryanEBioMedicine2020-05-08
Transcriptome and translatome profiles of Streptomyces species in different growth phases.Woori Kim, Soonkyu Hwang, Namil Lee, Yongjae Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan ChoScientific Data2020-05-08
Comparison of metal-bound and unbound structures of aminopeptidase B proteins from Escherichia coli and Yersinia pestis.George Minasov, Matthew R Lam, Monica Rosas-Lemus, Joanna Sławek, Magdalena Woinska, Ivan G Shabalin, Ludmilla Shuvalova, Bernhard Ø Palsson, Adam Godzik, Wladek Minor, Karla J F SatchellProtein Science : A Publication Of The Protein Society2020-05-08
Microbiome profile associated with malignant pleural effusion.Samira Shojaee, Anukriti Sharma, Neil Gottel, Trinidad Sanchez, Jack A Gilbert, Najib M RahmanPloS One2020-05-08
Executive Summary: Therapeutic Monitoring of Vancomycin for Serious Methicillin-Resistant Staphylococcus aureus Infections: A Revised Consensus Guideline and Review of the American Society of Health-System Pharmacists, the Infectious Diseases Society of America, the Pediatric Infectious Diseases Society, and the Society of Infectious Diseases Pharmacists.Michael J Rybak, Jennifer Le, Thomas Lodise, Donald Levine, John Bradley, Catherine Liu, Bruce Mueller, Manjunath Pai, Annie Wong-Beringer, John C Rotschafer, Keith Rodvold, Holly D Maples, Benjamin M LomaestroJournal Of The Pediatric Infectious Diseases Society2020-05-06
Bladder bacterial diversity differs in continent and incontinent women: a cross-sectional study.Travis K Price, Huaiying Lin, Xiang Gao, Krystal J Thomas-White, Evann E Hilt, Elizabeth R Mueller, Alan J Wolfe, Qunfeng Dong, Linda BrubakerAmerican Journal Of Obstetrics And Gynecology2020-05-05
Missed or delayed diagnosis of Kawasaki disease during the 2019 novel coronavirus disease (COVID-19) pandemic.Ashraf S Harahsheh, Nagib Dahdah, Jane W Newburger, Michael A Portman, Maryam Piram, Robert Tulloh, Brian W McCrindle, Sarah D de Ferranti, Rolando Cimaz, Dongngan T Truong, Jane C BurnsThe Journal Of Pediatrics2020-05-03
An update on the role of the microbiome in non-alcoholic fatty liver disease pathogenesis, diagnosis, and treatment.Marialena Mouzaki, Rohit LoombaCurrent Treatment Options In Gastroenterology2020-05-02
A Community Letter Regarding Sharing Biomolecular Simulation Data for COVID-19.Rommie E Amaro, Adrian J MulhollandJournal Of Chemical Information And Modeling2020-05-01
A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.David E Gordon, Gwendolyn M Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Kris M White, Matthew J O'Meara, Veronica V Rezelj, Jeffrey Z Guo, Danielle L Swaney, Tia A Tummino, Ruth Hüttenhain, Robyn M Kaake, Alicia L Richards, Beril Tutuncuoglu, Helene Foussard, Jyoti Batra, Kelsey Haas, Maya Modak, Minkyu Kim, Paige Haas, Benjamin J Polacco, Hannes Braberg, Jacqueline M Fabius, Manon Eckhardt, Margaret Soucheray, Melanie J Bennett, Merve Cakir, Michael J McGregor, Qiongyu Li, Bjoern Meyer, Ferdinand Roesch, Thomas Vallet, Alice Mac Kain, Lisa Miorin, Elena Moreno, Zun Zar Chi Naing, Yuan Zhou, Shiming Peng, Ying Shi, Ziyang Zhang, Wenqi Shen, Ilsa T Kirby, James E Melnyk, John S Chorba, Kevin Lou, Shizhong A Dai, Inigo Barrio-Hernandez, Danish Memon, Claudia Hernandez-Armenta, Jiankun Lyu, Christopher J P Mathy, Tina Perica, Kala Bharath Pilla, Sai J Ganesan, Daniel J Saltzberg, Ramachandran Rakesh, Xi Liu, Sara B Rosenthal, Lorenzo Calviello, Srivats Venkataramanan, Jose Liboy-Lugo, Yizhu Lin, Xi-Ping Huang, YongFeng Liu, Stephanie A Wankowicz, Markus Bohn, Maliheh Safari, Fatima S Ugur, Cassandra Koh, Nastaran Sadat Savar, Quang Dinh Tran, Djoshkun Shengjuler, Sabrina J Fletcher, Michael C O'Neal, Yiming Cai, Jason C J Chang, David J Broadhurst, Saker Klippsten, Phillip P Sharp, Nicole A Wenzell, Duygu Kuzuoglu-Ozturk, Hao-Yuan Wang, Raphael Trenker, Janet M Young, Devin A Cavero, Joseph Hiatt, Theodore L Roth, Ujjwal Rathore, Advait Subramanian, Julia Noack, Mathieu Hubert, Robert M Stroud, Alan D Frankel, Oren S Rosenberg, Kliment A Verba, David A Agard, Melanie Ott, Michael Emerman, Natalia Jura, Mark von Zastrow, Eric Verdin, Alan Ashworth, Olivier Schwartz, Christophe d'Enfert, Shaeri Mukherjee, Matt Jacobson, Harmit S Malik, Danica G Fujimori, Trey Ideker, Charles S Craik, Stephen N Floor, James S Fraser, John D Gross, Andrej Sali, Bryan L Roth, Davide Ruggero, Jack Taunton, Tanja Kortemme, Pedro Beltrao, Marco Vignuzzi, Adolfo García-Sastre, Kevan M Shokat, Brian K Shoichet, Nevan J KroganNature2020-04-30
QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data.Mehrbod Estaki, Lingjing Jiang, Nicholas A Bokulich, Daniel McDonald, Antonio González, Tomasz Kosciolek, Cameron Martino, Qiyun Zhu, Amanda Birmingham, Yoshiki Vázquez-Baeza, Matthew R Dillon, Evan Bolyen, J Gregory Caporaso, Rob KnightCurrent Protocols In Bioinformatics2020-04-29
Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes.Nathan Mih, Jonathan M Monk, Xin Fang, Edward Catoiu, David Heckmann, Laurence Yang, Bernhard O PalssonBMC Bioinformatics2020-04-29
Visualizing 'omic feature rankings and log-ratios using Qurro.Marcus W Fedarko, Cameron Martino, James T Morton, Antonio González, Gibraan Rahman, Clarisse A Marotz, Jeremiah J Minich, Eric E Allen, Rob KnightNAR Genomics And Bioinformatics2020-04-28
A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria.Jordan E Bisanz, Paola Soto-Perez, Cecilia Noecker, Alexander A Aksenov, Kathy N Lam, Grace E Kenney, Elizabeth N Bess, Henry J Haiser, Than S Kyaw, Feiqiao B Yu, Vayu M Rekdal, Connie W Y Ha, Suzanne Devkota, Emily P Balskus, Pieter C Dorrestein, Emma Allen-Vercoe, Peter J TurnbaughCell Host & Microbe2020-04-28
Encoding Membrane-Potential-Based Memory within a Microbial Community.Chih-Yu Yang, Maja Bialecka-Fornal, Colleen Weatherwax, Joseph W Larkin, Arthur Prindle, Jintao Liu, Jordi Garcia-Ojalvo, Gürol M SüelCell Systems2020-04-27
Detection of Nucleocapsid Antibody to SARS-CoV-2 is More Sensitive than Antibody to Spike Protein in COVID-19 Patients.Peter D Burbelo, Francis X Riedo, Chihiro Morishima, Stephen Rawlings, Davey Smith, Sanchita Das, Jeffrey R Strich, Daniel S Chertow, Richard T Davey, Jeffrey I CohenMedRxiv : The Preprint Server For Health Sciences2020-04-24
Functional Microbial Responses to Alcohol Abstinence in Patients With Alcohol Use Disorder.Bei Gao, Atoosa Emami, Rongrong Zhou, Sonja Lang, Yi Duan, Yanhan Wang, Lu Jiang, Rohit Loomba, David A Brenner, Peter Stärkel, Bernd SchnablFrontiers In Physiology2020-04-24
Active Delivery of VLPs Promotes Anti-Tumor Activity in a Mouse Ovarian Tumor Model.Chao Wang, Berta Esteban Fernández de Ávila, Rodolfo Mundaca-Uribe, Miguel Angel Lopez-Ramirez, Doris E Ramírez-Herrera, Sourabh Shukla, Nicole F Steinmetz, Joseph WangSmall (Weinheim An Der Bergstrasse, Germany)2020-04-24
One-Day Construction of Multiplex Arrays to Harness Natural CRISPR-Cas Systems.Robert M Cooper, Jeff HastyACS Synthetic Biology2020-04-22
Host Cathelicidin Exacerbates Group B Urinary Tract Infection.Kathryn A Patras, Alison Coady, Priyanka Babu, Samuel R Shing, Albert D Ha, Emma Rooholfada, Stephanie L Brandt, Matthew Geriak, Richard L Gallo, Victor NizetMSphere2020-04-22
Complete Genome Sequence of Strains FMAS_KW1, FMAS_KW2 and FMAS_AW1 Isolated from Leptospirosis Patients from Karawanalla and Awissawella, Sri Lanka.Indika Senevirathna, Dinesha Jayasundara, Joshua P Lefler, Kira L Chaiboonm, Janith Warnasekara, Suneth Agampodi, Michael A Matthias, Joseph M VinetzJournal Of Genomics2020-04-22
Implication of gut microbiota in the association between infant antibiotic exposure and childhood obesity and adiposity accumulation.Ling-Wei Chen, Jia Xu, Shu E Soh, Izzuddin M Aris, Mya-Thway Tint, Peter D Gluckman, Kok Hian Tan, Lynette Pei-Chi Shek, Yap-Seng Chong, Fabian Yap, Keith M Godfrey, Jack A Gilbert, Neerja Karnani, Yung Seng LeeInternational Journal Of Obesity (2005)2020-04-22
Temporal Dynamics of the Adult Female Lower Urinary Tract Microbiota.Travis K Price, Birte Wolff, Thomas Halverson, Roberto Limeira, Linda Brubaker, Qunfeng Dong, Elizabeth R Mueller, Alan J WolfeMBio2020-04-21
Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates.Joana Damas, Graham M Hughes, Kathleen C Keough, Corrie A Painter, Nicole S Persky, Marco Corbo, Michael Hiller, Klaus-Peter Koepfli, Andreas R Pfenning, Huabin Zhao, Diane P Genereux, Ross Swofford, Katherine S Pollard, Oliver A Ryder, Martin T Nweeia, Kerstin Lindblad-Toh, Emma C Teeling, Elinor K Karlsson, Harris A LewinBioRxiv : The Preprint Server For Biology2020-04-18
Modified Sialic Acids on Mucus and Erythrocytes Inhibit Influenza A Virus Hemagglutinin and Neuraminidase Functions.Karen N Barnard, Brynn K Alford-Lawrence, David W Buchholz, Brian R Wasik, Justin R LaClair, Hai Yu, Rebekah Honce, Stefan Ruhl, Petar Pajic, Erin K Daugherity, Xi Chen, Stacey L Schultz-Cherry, Hector C Aguilar, Ajit Varki, Colin R ParrishJournal Of Virology2020-04-16
Have incidence rates of liver cancer peaked in the United States?Jessica L Petrick, Andrea A Florio, Rohit Loomba, Katherine A McGlynnCancer2020-04-15
Epithelial transport in digestive diseases: mice, monolayers, and mechanisms.Kim E BarrettAmerican Journal Of Physiology. Cell Physiology2020-04-15
Sensitivity in Detection of Antibodies to Nucleocapsid and Spike Proteins of Severe Acute Respiratory Syndrome Coronavirus 2 in Patients With Coronavirus Disease 2019.Peter D Burbelo, Francis X Riedo, Chihiro Morishima, Stephen Rawlings, Davey Smith, Sanchita Das, Jeffrey R Strich, Daniel S Chertow, Richard T Davey, Jeffrey I CohenThe Journal Of Infectious Diseases2020-04-14
Are we facing a crashing wave of neuropsychiatric sequelae of COVID-19? Neuropsychiatric symptoms and potential immunologic mechanisms.Emily A Troyer, Jordan N Kohn, Suzi HongBrain, Behavior, And Immunity2020-04-13
Genetically engineered control of phenotypic structure in microbial colonies.Philip Bittihn, Andriy Didovyk, Lev S Tsimring, Jeff HastyNature Microbiology2020-04-13
Enhanced Characterization of Drug Metabolism and the Influence of the Intestinal Microbiome: A Pharmacokinetic, Microbiome, and Untargeted Metabolomics Study.Alan K Jarmusch, Alison Vrbanac, Jeremiah D Momper, Joseph D Ma, Maher Alhaja, Marlon Liyanage, Rob Knight, Pieter C Dorrestein, Shirley M TsunodaClinical And Translational Science2020-04-13
SARS-CoV-2 and human milk: what is the evidence?Kimberly A Lackey, Ryan M Pace, Janet E Williams, Lars Bode, Sharon M Donovan, Kirsi M Järvinen, Antti E Seppo, Daniel J Raiten, Courtney L Meehan, Mark A McGuire, Michelle K McGuireMedRxiv : The Preprint Server For Health Sciences2020-04-11
Clinical Best Practice Advice for Hepatology and Liver Transplant Providers During the COVID-19 Pandemic: AASLD Expert Panel Consensus Statement.Oren K Fix, Bilal Hameed, Robert J Fontana, Ryan M Kwok, Brendan M McGuire, David C Mulligan, Daniel S Pratt, Mark W Russo, Michael L Schilsky, Elizabeth C Verna, Rohit Loomba, David E Cohen, Jorge A Bezerra, K Rajender Reddy, Raymond T ChungHepatology (Baltimore, Md.)2020-04-11
The Systems Biology of Drug Metabolizing Enzymes and Transporters: Relevance to Quantitative Systems Pharmacology.Sanjay K Nigam, Kevin T Bush, Vibha Bhatnagar, Samuel M Poloyac, Jeremiah D MomperClinical Pharmacology And Therapeutics2020-04-11
Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing.Christian Lieven, Moritz E Beber, Brett G Olivier, Frank T Bergmann, Meric Ataman, Parizad Babaei, Jennifer A Bartell, Lars M Blank, Siddharth Chauhan, Kevin Correia, Christian Diener, Andreas Dräger, Birgitta E Ebert, Janaka N Edirisinghe, José P Faria, Adam M Feist, Georgios Fengos, Ronan M T Fleming, Beatriz García-Jiménez, Vassily Hatzimanikatis, Wout van Helvoirt, Christopher S Henry, Henning Hermjakob, Markus J Herrgård, Ali Kaafarani, Hyun Uk Kim, Zachary King, Steffen Klamt, Edda Klipp, Jasper J Koehorst, Matthias König, Meiyappan Lakshmanan, Dong-Yup Lee, Sang Yup Lee, Sunjae Lee, Nathan E Lewis, Filipe Liu, Hongwu Ma, Daniel Machado, Radhakrishnan Mahadevan, Paulo Maia, Adil Mardinoglu, Gregory L Medlock, Jonathan M Monk, Jens Nielsen, Lars Keld Nielsen, Juan Nogales, Intawat Nookaew, Bernhard O Palsson, Jason A Papin, Kiran R Patil, Mark Poolman, Nathan D Price, Osbaldo Resendis-Antonio, Anne Richelle, Isabel Rocha, Benjamín J Sánchez, Peter J Schaap, Rahuman S Malik Sheriff, Saeed Shoaie, Nikolaus Sonnenschein, Bas Teusink, Paulo Vilaça, Jon Olav Vik, Judith A H Wodke, Joana C Xavier, Qianqian Yuan, Maksim Zakhartsev, Cheng ZhangNature Biotechnology2020-04-09
Gut-derived uremic toxin handling in vivo requires OAT-mediated tubular secretion in chronic kidney disease.Kevin T Bush, Prabhleen Singh, Sanjay K NigamJCI Insight2020-04-09
USPSTF 2020 Recommendations on Screening for Asymptomatic Bacterial Vaginosis in Pregnancy.Amanda L Lewis, Louise C LaurentJAMA2020-04-08
Computational Approach to Identifying Universal Macrophage Biomarkers.Dharanidhar Dang, Sahar Taheri, Soumita Das, Pradipta Ghosh, Lawrence S Prince, Debashis SahooFrontiers In Physiology2020-04-08
Nonlinear Biosynthetic Assembly of Alpiniamide by a Hybrid /-AT PKS-NRPS.Renata Sigrist, Hanna Luhavaya, Shaun M K McKinnie, Amanda Ferreira da Silva, Igor D Jurberg, Bradley S Moore, Luciana Gonzaga de OliveiraACS Chemical Biology2020-04-06
The circadian clock and darkness control natural competence in cyanobacteria.Arnaud Taton, Christian Erikson, Yiling Yang, Benjamin E Rubin, Scott A Rifkin, James W Golden, Susan S GoldenNature Communications2020-04-03
High-Throughput Screening of Kawasaki Disease Sera for Antiviral Antibodies.Daniel Quiat, Tomasz Kula, Chisato Shimizu, John T Kanegaye, Adriana H Tremoulet, Zachary Pitkowsky, MaryBeth Son, Jane W Newburger, Stephen J Elledge, Jane C BurnsThe Journal Of Infectious Diseases2020-04-02
Gut Microbiota-Derived Propionate Regulates the Expression of Reg3 Mucosal Lectins and Ameliorates Experimental Colitis in Mice.Danica Bajic, Adrian Niemann, Anna-Katharina Hillmer, Raquel Mejias-Luque, Sena Bluemel, Melissa Docampo, Maja C Funk, Elena Tonin, Michael Boutros, Bernd Schnabl, Dirk H Busch, Tsuyoshi Miki, Roland M Schmid, Marcel R M van den Brink, Markus Gerhard, Christoph K Stein-ThoeringerJournal Of Crohn's & Colitis2020-04-01
Palstimolide A: A Complex Polyhydroxy Macrolide with Antiparasitic Activity.Lena Keller, Jair L Siqueira-Neto, Julia M Souza, Korina Eribez, Gregory M LaMonte, Jennifer E Smith, William H GerwickMolecules (Basel, Switzerland)2020-03-31
Genetic Determinants Enabling Medium-Dependent Adaptation to Nafcillin in Methicillin-Resistant Staphylococcus aureus.Michael J Salazar, Henrique Machado, Nicholas A Dillon, Hannah Tsunemoto, Richard Szubin, Samira Dahesh, Joseph Pogliano, George Sakoulas, Bernhard O Palsson, Victor Nizet, Adam M FeistMSystems2020-03-31
Executive Summary: Therapeutic Monitoring of Vancomycin for Serious Methicillin-Resistant Staphylococcus aureus Infections: A Revised Consensus Guideline and Review of the American Society of Health-System Pharmacists, the Infectious Diseases Society of America, the Pediatric Infectious Diseases Society, and the Society of Infectious Diseases Pharmacists.Michael J Rybak, Jennifer Le, Thomas P Lodise, Donald P Levine, John S Bradley, Catherine Liu, Bruce A Mueller, Manjunath P Pai, Annie Wong-Beringer, John C Rotschafer, Keith A Rodvold, Holly D Maples, Benjamin M LomaestroPharmacotherapy2020-03-29
Two cases of type-a meningitis within the same week in the same hospital are phylogenetically unrelated but recently exchanged capsule genes.Yves Terrat, Lauge Farnaes, John Bradley, Nicolas Tromas, B Jesse ShapiroMicrobial Genomics2020-03-26
High Protein Intake Is Associated With Histological Disease Activity in Patients With NAFLD.Sonja Lang, Anna Martin, Fedja Farowski, Hilmar Wisplinghoff, Maria J G T Vehreschild, Jinyuan Liu, Marcin Krawczyk, Angela Nowag, Anne Kretzschmar, Jens Herweg, Bernd Schnabl, Xin M Tu, Frank Lammert, Tobias Goeser, Frank Tacke, Kathrin Heinzer, Philipp Kasper, Hans-Michael Steffen, Münevver DemirHepatology Communications2020-03-26
COVID-19, Mental Health and Aging: A Need for New Knowledge to Bridge Science and Service.Ipsit V Vahia, Dan G Blazer, Gwenn S Smith, Jordan F Karp, David C Steffens, Brent P Forester, Rajesh Tampi, Marc Agronin, Dilip V Jeste, Charles F ReynoldsThe American Journal Of Geriatric Psychiatry : Official Journal Of The American Association For Geriatric Psychiatry2020-03-25
An atlas of human metabolism.Jonathan L Robinson, Pınar Kocabaş, Hao Wang, Pierre-Etienne Cholley, Daniel Cook, Avlant Nilsson, Mihail Anton, Raphael Ferreira, Iván Domenzain, Virinchi Billa, Angelo Limeta, Alex Hedin, Johan Gustafsson, Eduard J Kerkhoven, L Thomas Svensson, Bernhard O Palsson, Adil Mardinoglu, Lena Hansson, Mathias Uhlén, Jens NielsenScience Signaling2020-03-24
Fermentable fibers induce rapid macro- and micronutrient depletion in Toll-like receptor 5-deficient mice.Rachel M Golonka, Beng San Yeoh, Yaqi Li, Piu Saha, Ahmed A Abokor, Xi Cheng, Xia Xiao, Darshan Shimoga Chandrashekar, Sooryanarayana Varambally, David J Gonzalez, A Catharine Ross, Matam Vijay-KumarAmerican Journal Of Physiology. Gastrointestinal And Liver Physiology2020-03-23
A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing.David E Gordon, Gwendolyn M Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Matthew J O'Meara, Jeffrey Z Guo, Danielle L Swaney, Tia A Tummino, Ruth Hüttenhain, Robyn M Kaake, Alicia L Richards, Beril Tutuncuoglu, Helene Foussard, Jyoti Batra, Kelsey Haas, Maya Modak, Minkyu Kim, Paige Haas, Benjamin J Polacco, Hannes Braberg, Jacqueline M Fabius, Manon Eckhardt, Margaret Soucheray, Melanie J Bennett, Merve Cakir, Michael J McGregor, Qiongyu Li, Zun Zar Chi Naing, Yuan Zhou, Shiming Peng, Ilsa T Kirby, James E Melnyk, John S Chorba, Kevin Lou, Shizhong A Dai, Wenqi Shen, Ying Shi, Ziyang Zhang, Inigo Barrio-Hernandez, Danish Memon, Claudia Hernandez-Armenta, Christopher J P Mathy, Tina Perica, Kala B Pilla, Sai J Ganesan, Daniel J Saltzberg, Rakesh Ramachandran, Xi Liu, Sara B Rosenthal, Lorenzo Calviello, Srivats Venkataramanan, Yizhu Lin, Stephanie A Wankowicz, Markus Bohn, Raphael Trenker, Janet M Young, Devin Cavero, Joe Hiatt, Theo Roth, Ujjwal Rathore, Advait Subramanian, Julia Noack, Mathieu Hubert, Ferdinand Roesch, Thomas Vallet, Björn Meyer, Kris M White, Lisa Miorin, David Agard, Michael Emerman, Davide Ruggero, Adolfo García-Sastre, Natalia Jura, Mark von Zastrow, Jack Taunton, Olivier Schwartz, Marco Vignuzzi, Christophe d'Enfert, Shaeri Mukherjee, Matt Jacobson, Harmit S Malik, Danica G Fujimori, Trey Ideker, Charles S Craik, Stephen Floor, James S Fraser, John Gross, Andrej Sali, Tanja Kortemme, Pedro Beltrao, Kevan Shokat, Brian K Shoichet, Nevan J KroganBioRxiv : The Preprint Server For Biology2020-03-22
Tracing the transmission dynamics of HIV-1 CRF55_01B.Junjie Zai, Haizhou Liu, Zhenzhen Lu, Antoine Chaillon, Davey Smith, Yi Li, Xingguang LiScientific Reports2020-03-20
A cullin-RING ubiquitin ligase promotes thermotolerance as part of the intracellular pathogen response in .Johan Panek, Spencer S Gang, Kirthi C Reddy, Robert J Luallen, Amitkumar Fulzele, Eric J Bennett, Emily R TroemelProceedings Of The National Academy Of Sciences Of The United States Of America2020-03-19
Alcoholic-Hepatitis, Links to Brain and Microbiome: Mechanisms, Clinical and Experimental Research.Manuela G Neuman, Helmut Karl Seitz, Samuel W French, Stephen Malnick, Heidekazu Tsukamoto, Lawrence B Cohen, Paula Hoffman, Boris Tabakoff, Michael Fasullo, Laura E Nagy, Pamela L Tuma, Bernd Schnabl, Sebastian Mueller, Jennifer L Groebner, French A Barbara, Jia Yue, Afifiyan Nikko, Mendoza Alejandro, Tillman Brittany, Vitocruz Edward, Kylie Harrall, Laura Saba, Opris MihaiBiomedicines2020-03-18
Multiple-Disease Detection and Classification across Cohorts via Microbiome Search.Xiaoquan Su, Gongchao Jing, Zheng Sun, Lu Liu, Zhenjiang Xu, Daniel McDonald, Zengbin Wang, Honglei Wang, Antonio Gonzalez, Yufeng Zhang, Shi Huang, Gavin Huttley, Rob Knight, Jian XuMSystems2020-03-17
Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome.Bryn C Taylor, Franck Lejzerowicz, Marion Poirel, Justin P Shaffer, Lingjing Jiang, Alexander Aksenov, Nicole Litwin, Gregory Humphrey, Cameron Martino, Sandrine Miller-Montgomery, Pieter C Dorrestein, Patrick Veiga, Se Jin Song, Daniel McDonald, Muriel Derrien, Rob KnightMSystems2020-03-17
Persistent chikungunya arthritis in Roraima, Brazil.Ramão Luciano Nogueira Hayd, Maony Rodrigues Moreno, Felipe Naveca, Richard Amdur, Karol Suchowiecki, Hugh Watson, Gary S Firestein, Gary Simon, Aileen Y ChangClinical Rheumatology2020-03-13
Old In Vitro Antimicrobial Breakpoints Are Misleading Stewardship Efforts, Delaying Adoption of Innovative Therapies, and Harming Patients.Paul G Ambrose, Sujata M Bhavnani, David R Andes, John S Bradley, Robert K Flamm, Jason M Pogue, Ronald N JonesOpen Forum Infectious Diseases2020-03-13
Therapeutic Monitoring of Vancomycin for Serious Methicillin-resistant Staphylococcus aureus Infections: A Revised Consensus Guideline and Review by the American Society of Health-system Pharmacists, the Infectious Diseases Society of America, the Pediatric Infectious Diseases Society, and the Society of Infectious Diseases Pharmacists.Michael J Rybak, Jennifer Le, Thomas P Lodise, Donald P Levine, John S Bradley, Catherine Liu, Bruce A Mueller, Manjunath P Pai, Annie Wong-Beringer, John C Rotschafer, Keith A Rodvold, Holly D Maples, Benjamin LomaestroClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2020-03-12
Mortality Risk Profiling of Staphylococcus aureus Bacteremia by Multi-omic Serum Analysis Reveals Early Predictive and Pathogenic Signatures.Jacob M Wozniak, Robert H Mills, Joshua Olson, J R Caldera, Gregory D Sepich-Poore, Marvic Carrillo-Terrazas, Chih-Ming Tsai, Fernando Vargas, Rob Knight, Pieter C Dorrestein, George Y Liu, Victor Nizet, George Sakoulas, Warren Rose, David J GonzalezCell2020-03-12
Interleukin-17 Inhibition in Spondyloarthritis Is Associated With Subclinical Gut Microbiome Perturbations and a Distinctive Interleukin-25-Driven Intestinal Inflammation.Julia Manasson, David S Wallach, Giuliana Guggino, Matthew Stapylton, Michelle H Badri, Gary Solomon, Soumya M Reddy, Roxana Coras, Alexander A Aksenov, Drew R Jones, Parvathy V Girija, Andrea L Neimann, Adriana Heguy, Leopoldo N Segal, Pieter C Dorrestein, Richard Bonneau, Monica Guma, Francesco Ciccia, Carles Ubeda, Jose C Clemente, Jose U ScherArthritis & Rheumatology (Hoboken, N.J.)2020-03-12
Microbiome analyses of blood and tissues suggest cancer diagnostic approach.Gregory D Poore, Evguenia Kopylova, Qiyun Zhu, Carolina Carpenter, Serena Fraraccio, Stephen Wandro, Tomasz Kosciolek, Stefan Janssen, Jessica Metcalf, Se Jin Song, Jad Kanbar, Sandrine Miller-Montgomery, Robert Heaton, Rana Mckay, Sandip Pravin Patel, Austin D Swafford, Rob KnightNature2020-03-11
Siglecs at the Host-Pathogen Interface.Yung-Chi Chang, Victor NizetAdvances In Experimental Medicine And Biology2020-03-11
Extending the Salinilactone Family.Christian Schlawis, Tim Harig, Stephanie Ehlers, Dulce G Guillen-Matus, Kaitlin E Creamer, Paul R Jensen, Stefan SchulzChembiochem : A European Journal Of Chemical Biology2020-03-10
Metabolome-Informed Microbiome Analysis Refines Metadata Classifications and Reveals Unexpected Medication Transfer in Captive Cheetahs.Julia M Gauglitz, James T Morton, Anupriya Tripathi, Shalisa Hansen, Michele Gaffney, Carolina Carpenter, Kelly C Weldon, Riya Shah, Amy Parampil, Andrea L Fidgett, Austin D Swafford, Rob Knight, Pieter C DorresteinMSystems2020-03-10
Directed Metabolic Pathway Evolution Enables Functional Pterin-Dependent Aromatic-Amino-Acid Hydroxylation in .Hao Luo, Lei Yang, Se Hyeuk Kim, Tune Wulff, Adam M Feist, Markus Herrgard, Bernhard Ø PalssonACS Synthetic Biology2020-03-09
Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice.Gregory P Donaldson, Wen-Chi Chou, Abigail L Manson, Peter Rogov, Thomas Abeel, James Bochicchio, Dawn Ciulla, Alexandre Melnikov, Peter B Ernst, Hiutung Chu, Georgia Giannoukos, Ashlee M Earl, Sarkis K MazmanianNature Microbiology2020-03-09
Chance and necessity in the pleiotropic consequences of adaptation for budding yeast.Elizabeth R Jerison, Alex N Nguyen Ba, Michael M Desai, Sergey KryazhimskiyNature Ecology & Evolution2020-03-09
Understanding the mother-breastmilk-infant "triad".Lars Bode, Arjun S Raman, Simon H Murch, Nigel C Rollins, Jeffrey I GordonScience (New York, N.Y.)2020-03-07
Systems Biology Analysis Reveals Eight SLC22 Transporter Subgroups, Including OATs, OCTs, and OCTNs.Darcy C Engelhart, Jeffry C Granados, Da Shi, Milton H Saier Jr, Michael E Baker, Ruben Abagyan, Sanjay K NigamInternational Journal Of Molecular Sciences2020-03-05
Metabolic and genetic basis for auxotrophies in Gram-negative species.Yara Seif, Kumari Sonal Choudhary, Ying Hefner, Amitesh Anand, Laurence Yang, Bernhard O PalssonProceedings Of The National Academy Of Sciences Of The United States Of America2020-03-04
MEMOTE for standardized genome-scale metabolic model testing.Christian Lieven, Moritz E Beber, Brett G Olivier, Frank T Bergmann, Meric Ataman, Parizad Babaei, Jennifer A Bartell, Lars M Blank, Siddharth Chauhan, Kevin Correia, Christian Diener, Andreas Dräger, Birgitta E Ebert, Janaka N Edirisinghe, José P Faria, Adam M Feist, Georgios Fengos, Ronan M T Fleming, Beatriz García-Jiménez, Vassily Hatzimanikatis, Wout van Helvoirt, Christopher S Henry, Henning Hermjakob, Markus J Herrgård, Ali Kaafarani, Hyun Uk Kim, Zachary King, Steffen Klamt, Edda Klipp, Jasper J Koehorst, Matthias König, Meiyappan Lakshmanan, Dong-Yup Lee, Sang Yup Lee, Sunjae Lee, Nathan E Lewis, Filipe Liu, Hongwu Ma, Daniel Machado, Radhakrishnan Mahadevan, Paulo Maia, Adil Mardinoglu, Gregory L Medlock, Jonathan M Monk, Jens Nielsen, Lars Keld Nielsen, Juan Nogales, Intawat Nookaew, Bernhard O Palsson, Jason A Papin, Kiran R Patil, Mark Poolman, Nathan D Price, Osbaldo Resendis-Antonio, Anne Richelle, Isabel Rocha, Benjamín J Sánchez, Peter J Schaap, Rahuman S Malik Sheriff, Saeed Shoaie, Nikolaus Sonnenschein, Bas Teusink, Paulo Vilaça, Jon Olav Vik, Judith A H Wodke, Joana C Xavier, Qianqian Yuan, Maksim Zakhartsev, Cheng ZhangNature Biotechnology2020-03-04
Inducible cell-to-cell signaling for tunable dynamics in microbial communities.Arianna Miano, Michael J Liao, Jeff HastyNature Communications2020-03-04
Reconstruction and Validation of a Genome-Scale Metabolic Model of (iCJ415), a Human Commensal and Opportunistic Pathogen.Christian S Jensen, Charles J Norsigian, Xin Fang, Xiaohui C Nielsen, Jens Jørgen Christensen, Bernhard O Palsson, Jonathan M MonkFrontiers In Genetics2020-03-03
Expression of Heterologous Gene Improves Glutathione (GSH)-Dependent Antioxidant System and Maintenance of Cellular Redox Status in PCC 7942.Young-Saeng Kim, Seong-Im Park, Jin-Ju Kim, Joseph S Boyd, Joris Beld, Arnaud Taton, Kyoung-In Lee, Il-Sup Kim, James W Golden, Ho-Sung YoonFrontiers In Plant Science2020-03-03
Longitudinal survey of microbiome associated with particulate matter in a megacity.Nan Qin, Peng Liang, Chunyan Wu, Guanqun Wang, Qian Xu, Xiao Xiong, Tingting Wang, Moreno Zolfo, Nicola Segata, Huanlong Qin, Rob Knight, Jack A Gilbert, Ting F ZhuGenome Biology2020-03-03
Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing.Farnaz Fouladi, Maximilian J Bailey, William B Patterson, Michael Sioda, Ivory C Blakley, Anthony A Fodor, Roshonda B Jones, Zhanghua Chen, Jeniffer S Kim, Frederick Lurmann, Cameron Martino, Rob Knight, Frank D Gilliland, Tanya L AldereteEnvironment International2020-03-02
Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens.Jason C Hyun, Erol S Kavvas, Jonathan M Monk, Bernhard O PalssonPLoS Computational Biology2020-03-02
Diet-induced obesity promotes infection by impairment of the innate antimicrobial defense function of dermal adipocyte progenitors.Ling-Juan Zhang, Christian F Guerrero-Juarez, Stella X Chen, Xiaowei Zhang, Meimei Yin, Fengwu Li, Shuai Wu, Joyce Chen, Min Li, Yingzi Liu, Shang I B Jiang, Tissa Hata, Maksim V Plikus, Richard L GalloScience Translational Medicine2020-03-02
Dietary prebiotics alter novel microbial dependent fecal metabolites that improve sleep.Robert S Thompson, Fernando Vargas, Pieter C Dorrestein, Maciej Chichlowski, Brian M Berg, Monika FleshnerScientific Reports2020-03-02
SHOGUN: a modular, accurate and scalable framework for microbiome quantification.Benjamin Hillmann, Gabriel A Al-Ghalith, Robin R Shields-Cutler, Qiyun Zhu, Rob Knight, Dan KnightsBioinformatics (Oxford, England)2020-02-27
Global chemical effects of the microbiome include new bile-acid conjugations.Robert A Quinn, Alexey V Melnik, Alison Vrbanac, Ting Fu, Kathryn A Patras, Mitchell P Christy, Zsolt Bodai, Pedro Belda-Ferre, Anupriya Tripathi, Lawton K Chung, Michael Downes, Ryan D Welch, Melissa Quinn, Greg Humphrey, Morgan Panitchpakdi, Kelly C Weldon, Alexander Aksenov, Ricardo da Silva, Julian Avila-Pacheco, Clary Clish, Sena Bae, Himel Mallick, Eric A Franzosa, Jason Lloyd-Price, Robert Bussell, Taren Thron, Andrew T Nelson, Mingxun Wang, Eric Leszczynski, Fernando Vargas, Julia M Gauglitz, Michael J Meehan, Emily Gentry, Timothy D Arthur, Alexis C Komor, Orit Poulsen, Brigid S Boland, John T Chang, William J Sandborn, Meerana Lim, Neha Garg, Julie C Lumeng, Ramnik J Xavier, Barbara I Kazmierczak, Ruchi Jain, Marie Egan, Kyung E Rhee, David Ferguson, Manuela Raffatellu, Hera Vlamakis, Gabriel G Haddad, Dionicio Siegel, Curtis Huttenhower, Sarkis K Mazmanian, Ronald M Evans, Victor Nizet, Rob Knight, Pieter C DorresteinNature2020-02-26
Fecal Viral Community Responses to High-Fat Diet in Mice.Anjelique Schulfer, Tasha M Santiago-Rodriguez, Melissa Ly, Joshua M Borin, Jessica Chopyk, Martin J Blaser, David T PrideMSphere2020-02-26
Author Correction: Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity.Robert C Kaplan, Zheng Wang, Mykhaylo Usyk, Daniela Sotres-Alvarez, Martha L Daviglus, Neil Schneiderman, Gregory A Talavera, Marc D Gellman, Bharat Thyagarajan, Jee-Young Moon, Yoshiki Vázquez-Baeza, Daniel McDonald, Jessica S Williams-Nguyen, Michael C Wu, Kari E North, Justin Shaffer, Christopher C Sollecito, Qibin Qi, Carmen R Isasi, Tao Wang, Rob Knight, Robert D BurkGenome Biology2020-02-25
Heterogeneity and clonal relationships of adaptive immune cells in ulcerative colitis revealed by single-cell analyses.Brigid S Boland, Zhaoren He, Matthew S Tsai, Jocelyn G Olvera, Kyla D Omilusik, Han G Duong, Eleanor S Kim, Abigail E Limary, Wenhao Jin, J Justin Milner, Bingfei Yu, Shefali A Patel, Tiani L Louis, Tiffani Tysl, Nadia S Kurd, Alexandra Bortnick, Lauren K Quezada, Jad N Kanbar, Ara Miralles, Danny Huylebroeck, Mark A Valasek, Parambir S Dulai, Siddharth Singh, Li-Fan Lu, Jack D Bui, Cornelis Murre, William J Sandborn, Ananda W Goldrath, Gene W Yeo, John T ChangScience Immunology2020-02-25
Phase 2 Study of the Safety, Pharmacokinetics and Efficacy of Ceftaroline Fosamil in Neonates and Very Young Infants With Late-onset Sepsis.John S Bradley, Gregory G Stone, Phylinda L S Chan, Susan R Raber, Todd Riccobene, Veronica Mas Casullo, Jean Li Yan, Victoria M Hendrick, Jennifer Hammond, Heidi K Leister-TebbeThe Pediatric Infectious Disease Journal2020-02-25
Microbial Colonization of Germ-Free Mice Restores Neointimal Hyperplasia Development After Arterial Injury.Edmund B Chen, Katherine E Shapiro, Kelly Wun, Thomas Kuntz, Betty R Theriault, Michael J Nooromid, Vanessa A Leone, Katharine G Harris, Qun Jiang, Melanie Spedale, Liqun Xiong, Jack A Gilbert, Eugene B Chang, Karen J HoJournal Of The American Heart Association2020-02-24
A Convolutional Neural Network-Based Approach for the Rapid Annotation of Molecularly Diverse Natural Products.Raphael Reher, Hyun Woo Kim, Chen Zhang, Huanru Henry Mao, Mingxun Wang, Louis-Félix Nothias, Andres Mauricio Caraballo-Rodriguez, Evgenia Glukhov, Bahar Teke, Tiago Leao, Kelsey L Alexander, Brendan M Duggan, Ezra L Van Everbroeck, Pieter C Dorrestein, Garrison W Cottrell, William H GerwickJournal Of The American Chemical Society2020-02-21
Host engulfment pathway controls inflammation in inflammatory bowel disease.Ibrahim M Sayed, Katherine Suarez, Eileen Lim, Sujay Singh, Matheus Pereira, Stella-Rita Ibeawuchi, Gajanan Katkar, Ying Dunkel, Yash Mittal, Ranajoy Chattopadhyay, Monica Guma, Brigid S Boland, Parambir S Dulai, William J Sandborn, Pradipta Ghosh, Soumita DasThe FEBS Journal2020-02-20
Repeated sleep disruption in mice leads to persistent shifts in the fecal microbiome and metabolome.Samuel J Bowers, Fernando Vargas, Antonio González, Shannon He, Peng Jiang, Pieter C Dorrestein, Rob Knight, Kenneth P Wright, Christopher A Lowry, Monika Fleshner, Martha H Vitaterna, Fred W TurekPloS One2020-02-20
Multi-Omic Profiling of Sponges Reveals Diverse Metabolomic and Microbiome Architectures that Are Non-overlapping with Ecological Neighbors.Ipsita Mohanty, Sheila Podell, Jason S Biggs, Neha Garg, Eric E Allen, Vinayak AgarwalMarine Drugs2020-02-19
Corrigendum: What's Normal? Microbiomes in Human Milk and Infant Feces Are Related to Each Other but Vary Geographically: The INSPIRE Study.Kimberly A Lackey, Janet E Williams, Courtney L Meehan, Jessica A Zachek, Elizabeth D Benda, William J Price, James A Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, Debela Gindola K, Linda J Kvist, Gloria E Otoo, Cristina García-Carral, Esther Jiménez, Lorena Ruiz, Juan M Rodríguez, Rossina G Pareja, Lars Bode, Mark A McGuire, Michelle K McGuireFrontiers In Nutrition2020-02-19
Mesoscale All-Atom Influenza Virus Simulations Suggest New Substrate Binding Mechanism.Jacob D Durrant, Sarah E Kochanek, Lorenzo Casalino, Pek U Ieong, Abigail C Dommer, Rommie E AmaroACS Central Science2020-02-19
Emerging Priorities for Microbiome Research.Chad M Cullen, Kawalpreet K Aneja, Sinem Beyhan, Clara E Cho, Stephen Woloszynek, Matteo Convertino, Sophie J McCoy, Yanyan Zhang, Matthew Z Anderson, David Alvarez-Ponce, Ekaterina Smirnova, Lisa Karstens, Pieter C Dorrestein, Hongzhe Li, Ananya Sen Gupta, Kevin Cheung, Jennifer Gloeckner Powers, Zhengqiao Zhao, Gail L RosenFrontiers In Microbiology2020-02-19
Gut microbiome heritability is nearly universal but environmentally contingent.Laura Grieneisen, Mauna Dasari, Trevor J Gould, Johannes R Björk, Jean-Christophe Grenier, Vania Yotova, David Jansen, Neil Gottel, Jacob B Gordon, Niki H Learn, Laurence R Gesquiere, Tim L Wango, Raphael S Mututua, J Kinyua Warutere, Long'ida Siodi, Jack A Gilbert, Luis B Barreiro, Susan C Alberts, Jenny Tung, Elizabeth A Archie, Ran BlekhmanScience (New York, N.Y.)2020-02-18
Attention/Working Memory, Learning and Memory in Adult Cameroonians: Normative Data, Effects of HIV Infection and Viral Genotype.Georgette D Kanmogne, Julius Y Fonsah, Anya Umlauf, Jacob Moul, Roland F Doh, Anne M Kengne, Bin Tang, Claude T Tagny, Emilienne Nchindap, Léopoldine Kenmogne, Donald Franklin, Dora M Njamnshi, Dora Mbanya, Alfred K Njamnshi, Robert K HeatonJournal Of The International Neuropsychological Society : JINS2020-02-18
Ecosystem effects of the world's largest invasive animal.Jonathan B Shurin, Nelson Aranguren-Riaño, Daniel Duque Negro, David Echeverri Lopez, Natalie T Jones, Oscar Laverde-R, Alexander Neu, Adriana Pedroza RamosEcology2020-02-18
Engineered immunogen binding to alum adjuvant enhances humoral immunity.Tyson J Moyer, Yu Kato, Wuhbet Abraham, Jason Y H Chang, Daniel W Kulp, Nicki Watson, Hannah L Turner, Sergey Menis, Robert K Abbott, Jinal N Bhiman, Mariane B Melo, Hayley A Simon, Sara Herrera-De la Mata, Shu Liang, Gregory Seumois, Yash Agarwal, Na Li, Dennis R Burton, Andrew B Ward, William R Schief, Shane Crotty, Darrell J IrvineNature Medicine2020-02-17
Advances in non-invasive assessment of hepatic fibrosis.Rohit Loomba, Leon A AdamsGut2020-02-17
Precision medicine in perinatal depression in light of the human microbiome.Beatriz Peñalver Bernabé, Pauline M Maki, Shannon M Dowty, Mariana Salas, Lauren Cralle, Zainab Shah, Jack A GilbertPsychopharmacology2020-02-17
Shared genetic risk between eating disorder- and substance-use-related phenotypes: Evidence from genome-wide association studies.Melissa A Munn-Chernoff, Emma C Johnson, Yi-Ling Chou, Jonathan R I Coleman, Laura M Thornton, Raymond K Walters, Zeynep Yilmaz, Jessica H Baker, Christopher Hübel, Scott Gordon, Sarah E Medland, Hunna J Watson, Héléna A Gaspar, Julien Bryois, Anke Hinney, Virpi M Leppä, Manuel Mattheisen, Stephan Ripke, Shuyang Yao, Paola Giusti-Rodríguez, Ken B Hanscombe, Roger A H Adan, Lars Alfredsson, Tetsuya Ando, Ole A Andreassen, Wade H Berrettini, Ilka Boehm, Claudette Boni, Vesna Boraska Perica, Katharina Buehren, Roland Burghardt, Matteo Cassina, Sven Cichon, Maurizio Clementi, Roger D Cone, Philippe Courtet, Scott Crow, James J Crowley, Unna N Danner, Oliver S P Davis, Martina de Zwaan, George Dedoussis, Daniela Degortes, Janiece E DeSocio, Danielle M Dick, Dimitris Dikeos, Christian Dina, Monika Dmitrzak-Weglarz, Elisa Docampo, Laramie E Duncan, Karin Egberts, Stefan Ehrlich, Geòrgia Escaramís, Tõnu Esko, Xavier Estivill, Anne Farmer, Angela Favaro, Fernando Fernández-Aranda, Manfred M Fichter, Krista Fischer, Manuel Föcker, Lenka Foretova, Andreas J Forstner, Monica Forzan, Christopher S Franklin, Steven Gallinger, Ina Giegling, Johanna Giuranna, Fragiskos Gonidakis, Philip Gorwood, Monica Gratacos Mayora, Sébastien Guillaume, Yiran Guo, Hakon Hakonarson, Konstantinos Hatzikotoulas, Joanna Hauser, Johannes Hebebrand, Sietske G Helder, Stefan Herms, Beate Herpertz-Dahlmann, Wolfgang Herzog, Laura M Huckins, James I Hudson, Hartmut Imgart, Hidetoshi Inoko, Vladimir Janout, Susana Jiménez-Murcia, Antonio Julià, Gursharan Kalsi, Deborah Kaminská, Leila Karhunen, Andreas Karwautz, Martien J H Kas, James L Kennedy, Anna Keski-Rahkonen, Kirsty Kiezebrink, Youl-Ri Kim, Kelly L Klump, Gun Peggy S Knudsen, Maria C La Via, Stephanie Le Hellard, Robert D Levitan, Dong Li, Lisa Lilenfeld, Bochao Danae Lin, Jolanta Lissowska, Jurjen Luykx, Pierre J Magistretti, Mario Maj, Katrin Mannik, Sara Marsal, Christian R Marshall, Morten Mattingsdal, Sara McDevitt, Peter McGuffin, Andres Metspalu, Ingrid Meulenbelt, Nadia Micali, Karen Mitchell, Alessio Maria Monteleone, Palmiero Monteleone, Benedetta Nacmias, Marie Navratilova, Ioanna Ntalla, Julie K O'Toole, Roel A Ophoff, Leonid Padyukov, Aarno Palotie, Jacques Pantel, Hana Papezova, Dalila Pinto, Raquel Rabionet, Anu Raevuori, Nicolas Ramoz, Ted Reichborn-Kjennerud, Valdo Ricca, Samuli Ripatti, Franziska Ritschel, Marion Roberts, Alessandro Rotondo, Dan Rujescu, Filip Rybakowski, Paolo Santonastaso, André Scherag, Stephen W Scherer, Ulrike Schmidt, Nicholas J Schork, Alexandra Schosser, Jochen Seitz, Lenka Slachtova, P Eline Slagboom, Margarita C T Slof-Op't Landt, Agnieszka Slopien, Sandro Sorbi, Beata Świątkowska, Jin P Szatkiewicz, Ioanna Tachmazidou, Elena Tenconi, Alfonso Tortorella, Federica Tozzi, Janet Treasure, Artemis Tsitsika, Marta Tyszkiewicz-Nwafor, Konstantinos Tziouvas, Annemarie A van Elburg, Eric F van Furth, Gudrun Wagner, Esther Walton, Elisabeth Widen, Eleftheria Zeggini, Stephanie Zerwas, Stephan Zipfel, Andrew W Bergen, Joseph M Boden, Harry Brandt, Steven Crawford, Katherine A Halmi, L John Horwood, Craig Johnson, Allan S Kaplan, Walter H Kaye, James Mitchell, Catherine M Olsen, John F Pearson, Nancy L Pedersen, Michael Strober, Thomas Werge, David C Whiteman, D Blake Woodside, Jakob Grove, Anjali K Henders, Janne T Larsen, Richard Parker, Liselotte V Petersen, Jennifer Jordan, Martin A Kennedy, Andreas Birgegård, Paul Lichtenstein, Claes Norring, Mikael Landén, Preben Bo Mortensen, Renato Polimanti, Jeanette N McClintick, Amy E Adkins, Fazil Aliev, Silviu-Alin Bacanu, Anthony Batzler, Sarah Bertelsen, Joanna M Biernacka, Tim B Bigdeli, Li-Shiun Chen, Toni-Kim Clarke, Franziska Degenhardt, Anna R Docherty, Alexis C Edwards, Jerome C Foo, Louis Fox, Josef Frank, Laura M Hack, Annette M Hartmann, Sarah M Hartz, Stefanie Heilmann-Heimbach, Colin Hodgkinson, Per Hoffmann, Jouke-Jan Hottenga, Bettina Konte, Jari Lahti, Marius Lahti-Pulkkinen, Dongbing Lai, Lannie Ligthart, Anu Loukola, Brion S Maher, Hamdi Mbarek, Andrew M McIntosh, Matthew B McQueen, Jacquelyn L Meyers, Yuri Milaneschi, Teemu Palviainen, Roseann E Peterson, Euijung Ryu, Nancy L Saccone, Jessica E Salvatore, Sandra Sanchez-Roige, Melanie Schwandt, Richard Sherva, Fabian Streit, Jana Strohmaier, Nathaniel Thomas, Jen-Chyong Wang, Bradley T Webb, Robbee Wedow, Leah Wetherill, Amanda G Wills, Hang Zhou, Jason D Boardman, Danfeng Chen, Doo-Sup Choi, William E Copeland, Robert C Culverhouse, Norbert Dahmen, Louisa Degenhardt, Benjamin W Domingue, Mark A Frye, Wolfgang Gäebel, Caroline Hayward, Marcus Ising, Margaret Keyes, Falk Kiefer, Gabriele Koller, John Kramer, Samuel Kuperman, Susanne Lucae, Michael T Lynskey, Wolfgang Maier, Karl Mann, Satu Männistö, Bertram Müller-Myhsok, Alison D Murray, John I Nurnberger, Ulrich Preuss, Katri Räikkönen, Maureen D Reynolds, Monika Ridinger, Norbert Scherbaum, Marc A Schuckit, Michael Soyka, Jens Treutlein, Stephanie H Witt, Norbert Wodarz, Peter Zill, Daniel E Adkins, Dorret I Boomsma, Laura J Bierut, Sandra A Brown, Kathleen K Bucholz, E Jane Costello, Harriet de Wit, Nancy Diazgranados, Johan G Eriksson, Lindsay A Farrer, Tatiana M Foroud, Nathan A Gillespie, Alison M Goate, David Goldman, Richard A Grucza, Dana B Hancock, Kathleen Mullan Harris, Victor Hesselbrock, John K Hewitt, Christian J Hopfer, William G Iacono, Eric O Johnson, Victor M Karpyak, Kenneth S Kendler, Henry R Kranzler, Kenneth Krauter, Penelope A Lind, Matt McGue, James MacKillop, Pamela A F Madden, Hermine H Maes, Patrik K E Magnusson, Elliot C Nelson, Markus M Nöthen, Abraham A Palmer, Brenda W J H Penninx, Bernice Porjesz, John P Rice, Marcella Rietschel, Brien P Riley, Richard J Rose, Pei-Hong Shen, Judy Silberg, Michael C Stallings, Ralph E Tarter, Michael M Vanyukov, Scott Vrieze, Tamara L Wall, John B Whitfield, Hongyu Zhao, Benjamin M Neale, Tracey D Wade, Andrew C Heath, Grant W Montgomery, Nicholas G Martin, Patrick F Sullivan, Jaakko Kaprio, Gerome Breen, Joel Gelernter, Howard J Edenberg, Cynthia M Bulik, Arpana AgrawalAddiction Biology2020-02-16
Differing salivary microbiome diversity, community and diurnal rhythmicity in association with affective state and peripheral inflammation in adults.Jordan N Kohn, Tomasz Kosciolek, Clarisse Marotz, Gajender Aleti, Robert N Guay-Ross, Seong-Hun Hong, Shalisa Hansen, Austin Swafford, Rob Knight, Suzi HongBrain, Behavior, And Immunity2020-02-14
Thirty complete Streptomyces genome sequences for mining novel secondary metabolite biosynthetic gene clusters.Namil Lee, Woori Kim, Soonkyu Hwang, Yongjae Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan ChoScientific Data2020-02-13
Circadian Rhythms in the Pathogenesis and Treatment of Fatty Liver Disease.Anand R Saran, Shravan Dave, Amir ZarrinparGastroenterology2020-02-13
Human Skin, Oral, and Gut Microbiomes Predict Chronological Age.Shi Huang, Niina Haiminen, Anna-Paola Carrieri, Rebecca Hu, Lingjing Jiang, Laxmi Parida, Baylee Russell, Celeste Allaband, Amir Zarrinpar, Yoshiki Vázquez-Baeza, Pedro Belda-Ferre, Hongwei Zhou, Ho-Cheol Kim, Austin D Swafford, Rob Knight, Zhenjiang Zech XuMSystems2020-02-11
A gut bacterial amyloid promotes α-synuclein aggregation and motor impairment in mice.Timothy R Sampson, Collin Challis, Neha Jain, Anastasiya Moiseyenko, Mark S Ladinsky, Gauri G Shastri, Taren Thron, Brittany D Needham, Istvan Horvath, Justine W Debelius, Stefan Janssen, Rob Knight, Pernilla Wittung-Stafshede, Viviana Gradinaru, Matthew Chapman, Sarkis K MazmanianELife2020-02-11
Cathelicidin preserves intestinal barrier function in polymicrobial sepsis.Jeffery Ho, Hung Chan, Yonghao Liang, Xiaodong Liu, Lin Zhang, Qing Li, Yuchen Zhang, Judeng Zeng, Felix N Ugwu, Idy H T Ho, Wei Hu, Johnny C W Yau, Sunny H Wong, Wai Tat Wong, Lowell Ling, Chi H Cho, Richard L Gallo, Tony Gin, Gary Tse, Jun Yu, Matthew T V Chan, Czarina C H Leung, William K K WuCritical Care (London, England)2020-02-10
Cruel to Be Kind: Epithelial, Microbial, and Immune Cell Interactions in Gastrointestinal Cancers.Shabnam Shalapour, Michael KarinAnnual Review Of Immunology2020-02-10
De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences.Nikolaos Vakirlis, Omer Acar, Brian Hsu, Nelson Castilho Coelho, S Branden Van Oss, Aaron Wacholder, Kate Medetgul-Ernar, Ray W Bowman, Cameron P Hines, John Iannotta, Saurin Bipin Parikh, Aoife McLysaght, Carlos J Camacho, Allyson F O'Donnell, Trey Ideker, Anne-Ruxandra CarvunisNature Communications2020-02-07
Patterns of Oral Microbiota Diversity in Adults and Children: A Crowdsourced Population Study.Zachary M Burcham, Nicole L Garneau, Sarah S Comstock, Robin M Tucker, Rob Knight, Jessica L Metcalf, Scientific Reports2020-02-07
3M-052, a synthetic TLR-7/8 agonist, induces durable HIV-1 envelope-specific plasma cells and humoral immunity in nonhuman primates.Sudhir Pai Kasturi, Mohammed Ata Ur Rasheed, Colin Havenar-Daughton, Mathew Pham, Traci Legere, Zarpheen Jinnah Sher, Yevgeny Kovalenkov, Sanjeev Gumber, Jessica Y Huang, Raphael Gottardo, William Fulp, Alicia Sato, Sheetal Sawant, Sherry Stanfield-Oakley, Nicole Yates, Celia LaBranche, S Munir Alam, Georgia Tomaras, Guido Ferrari, David Montefiori, Jens Wrammert, Francois Villinger, Mark Tomai, John Vasilakos, Christopher B Fox, Steven G Reed, Barton F Haynes, Shane Crotty, Rafi Ahmed, Bali PulendranScience Immunology2020-01-30
HIV/HCV therapy with ledipasvir/sofosbuvir after randomized switch to emtricitabine-tenofovir alafenamide-based single-tablet regimens.Gregory D Huhn, Moti Ramgopal, Mamta K Jain, Federico Hinestrosa, David M Asmuth, Jihad Slim, Deborah Goldstein, Shauna Applin, Julie H Ryu, Shuping Jiang, Stephanie Cox, Moupali Das, Thai Nguyen-Cleary, David Piontkowsky, Bill Guyer, Lorenzo Rossaro, Richard H HaubrichPloS One2020-01-29
Onion-like Multifunctional Microtrap Vehicles for Attraction-Trapping-Destruction of Biological Threats.Fernando Soto, Daniel Kupor, Miguel Angel Lopez-Ramirez, Fanan Wei, Emil Karshalev, Songsong Tang, Farshad Tehrani, Joseph WangAngewandte Chemie (International Ed. In English)2020-01-29
Tutuilamides A-C: Vinyl-Chloride-Containing Cyclodepsipeptides from Marine Cyanobacteria with Potent Elastase Inhibitory Properties.Lena Keller, Kirley Marques Canuto, Chenxi Liu, Brian M Suzuki, Jehad Almaliti, Asfandyar Sikandar, C Benjamin Naman, Evgenia Glukhov, Danmeng Luo, Brendan M Duggan, Hendrik Luesch, Jesko Koehnke, Anthony J O'Donoghue, William H GerwickACS Chemical Biology2020-01-28
Organ-level protein networks as a reference for the host effects of the microbiome.Robert H Mills, Jacob M Wozniak, Alison Vrbanac, Anaamika Campeau, Benoit Chassaing, Andrew Gewirtz, Rob Knight, David J GonzalezGenome Research2020-01-28
Iron competition triggers antibiotic biosynthesis in Streptomyces coelicolor during coculture with Myxococcus xanthus.Namil Lee, Woori Kim, Jinkyoo Chung, Yongjae Lee, Suhyung Cho, Kyoung-Soon Jang, Sun Chang Kim, Bernhard Palsson, Byung-Kwan ChoThe ISME Journal2020-01-28
STATR: A simple analysis pipeline of Ribo-Seq in bacteria.Donghui Choe, Bernhard Palsson, Byung-Kwan ChoJournal Of Microbiology (Seoul, Korea)2020-01-28
Experimental approaches to tracking mobile genetic elements in microbial communities.Christina C Saak, Cong B Dinh, Rachel J DuttonFEMS Microbiology Reviews2020-01-24
Genome-scale transcriptional dynamics and environmental biosensing.Garrett Graham, Nicholas Csicsery, Elizabeth Stasiowski, Gregoire Thouvenin, William H Mather, Michael Ferry, Scott Cookson, Jeff HastyProceedings Of The National Academy Of Sciences Of The United States Of America2020-01-23
Cytolysin-positive Enterococcus faecalis is not increased in patients with non-alcoholic steatohepatitis.Sonja Lang, Münevver Demir, Yi Duan, Anna Martin, Bernd SchnablLiver International : Official Journal Of The International Association For The Study Of The Liver2020-01-23
Identification of a Human Skin Commensal Bacterium that Selectively Kills Cutibacterium acnes.Alan M O'Neill, Teruaki Nakatsuji, Asumi Hayachi, Michael R Williams, Robert H Mills, David J Gonzalez, Richard L GalloThe Journal Of Investigative Dermatology2020-01-23
Comparative Analysis of Gut Microbiota Following Changes in Training Volume Among Swimmers.Jarrad Timothy Hampton-Marcell, Tifani W Eshoo, Marc D Cook, Jack A Gilbert, Craig A Horswill, Rachel PoretskyInternational Journal Of Sports Medicine2020-01-23
Dynamic post-translational modification profiling of -infected primary macrophages.Jonathan M Budzik, Danielle L Swaney, David Jimenez-Morales, Jeffrey R Johnson, Nicholas E Garelis, Teresa Repasy, Allison W Roberts, Lauren M Popov, Trevor J Parry, Dexter Pratt, Trey Ideker, Nevan J Krogan, Jeffery S CoxELife2020-01-17
Reinvigorating NIH Grant Peer Review.Shane Crotty, Catherine Blish, Ken Cadwell, Hongbo Chi, Ananda Goldrath, Douglas Green, Susan M Kaech, Matthew Krummel, Marion Pepper, Carla V Rothlin, E John Wherry, Immunity2020-01-16
A dual role for hepatocyte-intrinsic canonical NF-κB signaling in virus control.Sukumar Namineni, Tracy O'Connor, Suzanne Faure-Dupuy, Pål Johansen, Tobias Riedl, Kaijing Liu, Haifeng Xu, Indrabahadur Singh, Prashant Shinde, Fanghui Li, Aleksandra Pandyra, Piyush Sharma, Marc Ringelhan, Andreas Muschaweckh, Katharina Borst, Patrick Blank, Sandra Lampl, Katharina Neuhaus, David Durantel, Rayan Farhat, Achim Weber, Daniela Lenggenhager, Thomas M Kündig, Peter Staeheli, Ulrike Protzer, Dirk Wohlleber, Bernhard Holzmann, Marco Binder, Kai Breuhahn, Lisa Mareike Assmus, Jacob Nattermann, Zeinab Abdullah, Maude Rolland, Emmanuel Dejardin, Philipp A Lang, Karl S Lang, Michael Karin, Julie Lucifora, Ulrich Kalinke, Percy A Knolle, Mathias HeikenwalderJournal Of Hepatology2020-01-15
Macrofilaricidal Benzimidazole-Benzoxaborole Hybrids as an Approach to the Treatment of River Blindness: Part 1. Amide Linked Analogs.Tsutomu Akama, Yvonne R Freund, Pamela W Berry, David S Carter, Eric E Easom, Kurt Jarnagin, Christopher S Lunde, Jacob J Plattner, Fernando Rock, Rianna Stefanakis, Chelsea Fischer, Christina A Bulman, Kee Chong Lim, Brian M Suzuki, Nancy Tricoche, Abdelmoneim Mansour, Utami DiCosty, Scott McCall, Ben Carson, John W McCall, James McKerrow, Marc P Hübner, Sabine Specht, Achim Hoerauf, Sara Lustigman, Judy A Sakanari, Robert T JacobsACS Infectious Diseases2020-01-14
Guanitoxin, re-naming a cyanobacterial organophosphate toxin.Marli Fátima Fiore, Stella Thomaz de Lima, Wayne W Carmichael, Shaun M K McKinnie, Jonathan R Chekan, Bradley S MooreHarmful Algae2020-01-14
Flower-like patterns in multi-species bacterial colonies.Liyang Xiong, Yuansheng Cao, Robert Cooper, Wouter-Jan Rappel, Jeff Hasty, Lev TsimringELife2020-01-14
Microbial communities from Arctic marine sediments respond slowly to methane addition during ex situ enrichments.Scott Klasek, Marta E Torres, Douglas H Bartlett, Madeline Tyler, Wei-Li Hong, Frederick ColwellEnvironmental Microbiology2020-01-13
Scaffold and Parasite Hopping: Discovery of New Protozoal Proliferation Inhibitors.Baljinder Singh, Jean A Bernatchez, Laura-Isobel McCall, Claudia M Calvet, Jasmin Ackermann, Julia M Souza, Diane Thomas, Everton M Silva, Kelly A Bachovchin, Dana M Klug, Hitesh B Jalani, Seema Bag, Melissa J Buskes, Susan E Leed, Norma E Roncal, Erica C Penn, Jessey Erath, Ana Rodriguez, Richard J Sciotti, Robert F Campbell, James McKerrow, Jair L Siqueira-Neto, Lori Ferrins, Michael P PollastriACS Medicinal Chemistry Letters2020-01-10
Microbial Diversity in Clinical Microbiome Studies: Sample Size and Statistical Power Considerations.Climent Casals-Pascual, Antonio González, Yoshiki Vázquez-Baeza, Se Jin Song, Lingjing Jiang, Rob KnightGastroenterology2020-01-10
Cariogenic Produces Tetramic Acid Strain-Specific Antibiotics That Impair Commensal Colonization.Xiaoyu Tang, Yuta Kudo, Jonathon L Baker, Sandra LaBonte, Peter A Jordan, Shaun M K McKinnie, Jian Guo, Tao Huan, Bradley S Moore, Anna EdlundACS Infectious Diseases2020-01-10
HORMA Domain Proteins and a Trip13-like ATPase Regulate Bacterial cGAS-like Enzymes to Mediate Bacteriophage Immunity.Qiaozhen Ye, Rebecca K Lau, Ian T Mathews, Erica A Birkholz, Jeramie D Watrous, Camillia S Azimi, Joe Pogliano, Mohit Jain, Kevin D CorbettMolecular Cell2020-01-10
Structure and Mechanism of a Cyclic Trinucleotide-Activated Bacterial Endonuclease Mediating Bacteriophage Immunity.Rebecca K Lau, Qiaozhen Ye, Erica A Birkholz, Kyle R Berg, Lucas Patel, Ian T Mathews, Jeramie D Watrous, Kaori Ego, Aaron T Whiteley, Brianna Lowey, John J Mekalanos, Philip J Kranzusch, Mohit Jain, Joe Pogliano, Kevin D CorbettMolecular Cell2020-01-10
The Fungal Pathogen Promotes Bladder Colonization of Group B .Samuel R Shing, Anissa R Ramos, Kathryn A Patras, Angelica M Riestra, Sinead McCabe, Victor Nizet, Alison CoadyFrontiers In Cellular And Infection Microbiology2020-01-10
Bacteriophage lambda overcomes a perturbation in its host-viral genetic network through mutualism and evolution of life history traits.Animesh Gupta, Anechelle N Soto, Sarah J Medina, Katherine L Petrie, Justin R MeyerEvolution; International Journal Of Organic Evolution2020-01-09
Upon microbial challenge, human neutrophils undergo rapid changes in nuclear architecture and chromatin folding to orchestrate an immediate inflammatory gene program.Matthew Denholtz, Yina Zhu, Zhaoren He, Hanbin Lu, Takeshi Isoda, Simon Döhrmann, Victor Nizet, Cornelis MurreGenes & Development2020-01-09
Breastmilk Lipids and Oligosaccharides Influence Branched Short-Chain Fatty Acid Concentrations in Infants with Excessive Weight Gain.Ceyda Tugba Pekmez, Melanie Wange Larsson, Mads Vendelbo Lind, Natalia Vazquez Manjarrez, Chloe Yonemitsu, Anni Larnkjaer, Lars Bode, Christian Mølgaard, Kim F Michaelsen, Lars Ove DragstedMolecular Nutrition & Food Research2020-01-07
Ceftolozane/Tazobactam in Neonates and Young Infants: The Challenges of Collecting Pharmacokinetics and Safety Data in This Vulnerable Patient Population.Jocelyn Y Ang, Antonio Arrieta, John S Bradley, Zufei Zhang, Brian Yu, Matthew L Rizk, Matthew G Johnson, Elizabeth G RheeAmerican Journal Of Perinatology2020-01-07
Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats.Se Jin Song, Jon G Sanders, Frédéric Delsuc, Jessica Metcalf, Katherine Amato, Michael W Taylor, Florent Mazel, Holly L Lutz, Kevin Winker, Gary R Graves, Gregory Humphrey, Jack A Gilbert, Shannon J Hackett, Kevin P White, Heather R Skeen, Sarah M Kurtis, Jack Withrow, Thomas Braile, Matthew Miller, Kevin G McCracken, James M Maley, Vanessa O Ezenwa, Allison Williams, Jessica M Blanton, Valerie J McKenzie, Rob KnightMBio2020-01-07
The Caenorhabditis elegans RIG-I Homolog DRH-1 Mediates the Intracellular Pathogen Response upon Viral Infection.Jessica N Sowa, Hongbing Jiang, Lakshmi Somasundaram, Eillen Tecle, Guorong Xu, David Wang, Emily R TroemelJournal Of Virology2020-01-06
Mass spectrometry searches using MASST.Mingxun Wang, Alan K Jarmusch, Fernando Vargas, Alexander A Aksenov, Julia M Gauglitz, Kelly Weldon, Daniel Petras, Ricardo da Silva, Robert Quinn, Alexey V Melnik, Justin J J van der Hooft, Andrés Mauricio Caraballo-Rodríguez, Louis Felix Nothias, Christine M Aceves, Morgan Panitchpakdi, Elizabeth Brown, Francesca Di Ottavio, Nicole Sikora, Emmanuel O Elijah, Lara Labarta-Bajo, Emily C Gentry, Shabnam Shalapour, Kathleen E Kyle, Sara P Puckett, Jeramie D Watrous, Carolina S Carpenter, Amina Bouslimani, Madeleine Ernst, Austin D Swafford, Elina I Zúñiga, Marcy J Balunas, Jonathan L Klassen, Rohit Loomba, Rob Knight, Nuno Bandeira, Pieter C DorresteinNature Biotechnology2020-01-03
miR-155 promotes T reg cell development by safeguarding medullary thymic epithelial cell maturation.Jiayi Dong, Lindsey M Warner, Ling-Li Lin, Mei-Chi Chen, Ryan M O'Connell, Li-Fan LuThe Journal Of Experimental Medicine2019-12-31
Single-Cell Transcriptomics Reveal a Correlation between Genome Architecture and Gene Family Evolution in Ciliates.Ying Yan, Xyrus X Maurer-Alcalá, Rob Knight, Sergei L Kosakovsky Pond, Laura A KatzMBio2019-12-24
Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B.Ke Shi, Özlem Demir, Michael A Carpenter, Surajit Banerjee, Daniel A Harki, Rommie E Amaro, Reuben S Harris, Hideki AiharaFASEB BioAdvances2019-12-24
The emergence of microbiome centres.Jennifer B H Martiny, Katrine L Whiteson, Brendan J M Bohannan, Lawrence A David, Nicole A Hynson, Margaret McFall-Ngai, John F Rawls, Thomas M Schmidt, Zaid Abdo, Martin J Blaser, Seth Bordenstein, Christian Bréchot, Carolee T Bull, Pieter Dorrestein, Jonathan A Eisen, Ferran Garcia-Pichel, Jack Gilbert, Kirsten S Hofmockel, Mary L Holtz, Rob Knight, David B Mark Welch, Daniel McDonald, Barbara Methé, Nigel J Mouncey, Noel T Mueller, Catherine A Pfister, Lita Proctor, Joel L SachsNature Microbiology2019-12-21
Systems-level analysis of NalD mutation, a recurrent driver of rapid drug resistance in acute Pseudomonas aeruginosa infection.Jinyuan Yan, Henri Estanbouli, Chen Liao, Wook Kim, Jonathan M Monk, Rayees Rahman, Mini Kamboj, Bernhard O Palsson, Weigang Qiu, Joao B XavierPLoS Computational Biology2019-12-20
Microbial biogeography and ecology of the mouth and implications for periodontal diseases.Diana M Proctor, Katie M Shelef, Antonio Gonzalez, Clara L Davis, Les Dethlefsen, Adam R Burns, Peter M Loomer, Gary C Armitage, Mark I Ryder, Meredith E Millman, Rob Knight, Susan P Holmes, David A RelmanPeriodontology 20002019-12-19
Enzyme-powered Janus platelet cell robots for active and targeted drug delivery.Songsong Tang, Fangyu Zhang, Hua Gong, Fanan Wei, Jia Zhuang, Emil Karshalev, Berta Esteban-Fernández de Ávila, Chuying Huang, Zhidong Zhou, Zhengxing Li, Lu Yin, Haifeng Dong, Ronnie H Fang, Xueji Zhang, Liangfang Zhang, Joseph WangScience Robotics2019-12-18
De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments.Bahar Behsaz, Hosein Mohimani, Alexey Gurevich, Andrey Prjibelski, Mark Fisher, Fernando Vargas, Larry Smarr, Pieter C Dorrestein, Joshua S Mylne, Pavel A PevznerCell Systems2019-12-18
Structure of galactarate dehydratase, a new fold in an enolase involved in bacterial fitness after antibiotic treatment.Monica Rosas-Lemus, George Minasov, Ludmilla Shuvalova, Zdzislaw Wawrzak, Olga Kiryukhina, Nathan Mih, Lukasz Jaroszewski, Bernhard Palsson, Adam Godzik, Karla J F SatchellProtein Science : A Publication Of The Protein Society2019-12-17
Profiling the effect of nafcillin on HA-MRSA D712 using bacteriological and physiological media.Akanksha Rajput, Saugat Poudel, Hannah Tsunemoto, Michael Meehan, Richard Szubin, Connor A Olson, Anne Lamsa, Yara Seif, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M Monk, Pieter C Dorrestein, Rob Knight, Victor Nizet, Bernhard O Palsson, Adam M Feist, Joe PoglianoScientific Data2019-12-17
A bacterial gene-drive system efficiently edits and inactivates a high copy number antibiotic resistance locus.J Andrés Valderrama, Surashree S Kulkarni, Victor Nizet, Ethan BierNature Communications2019-12-16
MiR-23~27~24-mediated control of humoral immunity reveals a TOX-driven regulatory circuit in follicular helper T cell differentiation.Cheng-Jang Wu, Sunglim Cho, Hsi-Yuan Huang, Chun-Hao Lu, Jasmin Russ, Leilani O Cruz, Flavia Franco da Cunha, Mei-Chi Chen, Ling-Li Lin, Lindsey M Warner, Hsin-Kai Liao, Daniel T Utzschneider, Sara Quon, Jacqueline Berner, Niels Olsen Saraiva Camara, Dietmar Zehn, Juan Carlos Izpisua Belmonte, Li-Chen Chen, Shiang-Fu Huang, Ming-Ling Kuo, Li-Fan LuScience Advances2019-12-11
The Microbiome and Its Potential for Pharmacology.Aries Chavira, Pedro Belda-Ferre, Tomasz Kosciolek, Farhana Ali, Pieter C Dorrestein, Rob KnightHandbook Of Experimental Pharmacology2019-12-11
Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli.Bin Du, Laurence Yang, Colton J Lloyd, Xin Fang, Bernhard O PalssonPLoS Computational Biology2019-12-06
Immune Dysregulation in the Tonsillar Microenvironment of Periodic Fever, Aphthous Stomatitis, Pharyngitis, Adenitis (PFAPA) Syndrome.Irene Luu, Anukriti Sharma, Marisela Guaderrama, Michelle Peru, Javan Nation, Nathan Page, Daniela Carvalho, Anthony Magit, Wen Jiang, Shelby Leuin, Morgan Bliss, Marcella Bothwell, Matthew Brigger, Donald Kearns, Robert Newbury, Seth Pransky, Jack A Gilbert, Lori BroderickJournal Of Clinical Immunology2019-12-05
Siglec-14 Enhances NLRP3-Inflammasome Activation in Macrophages.Chih-Ming Tsai, Angelica M Riestra, Syed Raza Ali, Jerry J Fong, Janet Z Liu, Gillian Hughes, Ajit Varki, Victor NizetJournal Of Innate Immunity2019-12-05
The Escherichia coli transcriptome mostly consists of independently regulated modules.Anand V Sastry, Ye Gao, Richard Szubin, Ying Hefner, Sibei Xu, Donghyuk Kim, Kumari Sonal Choudhary, Laurence Yang, Zachary A King, Bernhard O PalssonNature Communications2019-12-04
Type I IFNs and CD8 T cells increase intestinal barrier permeability after chronic viral infection.Lara Labarta-Bajo, Steven P Nilsen, Gregory Humphrey, Tara Schwartz, Karenina Sanders, Austin Swafford, Rob Knight, Jerrold R Turner, Elina I ZúñigaThe Journal Of Experimental Medicine2019-12-03
Statistics of correlated percolation in a bacterial community.Xiaoling Zhai, Joseph W Larkin, Kaito Kikuchi, Samuel E Redford, Ushasi Roy, Gürol M Süel, Andrew MuglerPLoS Computational Biology2019-12-02
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea.Qiyun Zhu, Uyen Mai, Wayne Pfeiffer, Stefan Janssen, Francesco Asnicar, Jon G Sanders, Pedro Belda-Ferre, Gabriel A Al-Ghalith, Evguenia Kopylova, Daniel McDonald, Tomasz Kosciolek, John B Yin, Shi Huang, Nimaichand Salam, Jian-Yu Jiao, Zijun Wu, Zhenjiang Z Xu, Kalen Cantrell, Yimeng Yang, Erfan Sayyari, Maryam Rabiee, James T Morton, Sheila Podell, Dan Knights, Wen-Jun Li, Curtis Huttenhower, Nicola Segata, Larry Smarr, Siavash Mirarab, Rob KnightNature Communications2019-12-02
Gadoxetate-enhanced Abbreviated MRI for Hepatocellular Carcinoma Surveillance: Preliminary Experience.Ryan L Brunsing, Dennis H Chen, Alexandra Schlein, Tanya Wolfson, Anthony Gamst, Adrija Mamidipalli, Naik Vietti Violi, Robert M Marks, Bachir Taouli, Rohit Loomba, Yuko Kono, Claude B SirlinRadiology. Imaging Cancer2019-11-29
A Novel Mouse Model of Acute-on-Chronic Cholestatic Alcoholic Liver Disease: A Systems Biology Comparison With Human Alcoholic Hepatitis.Shinji Furuya, Josepmaria Argemi, Takeki Uehara, Yuuki Katou, Derrick E Fouts, Bernd Schnabl, Laurent Dubuquoy, Abha Belorkar, Rajanikanth Vadigepalli, Hiroshi Kono, Ramon Bataller, Ivan RusynAlcoholism, Clinical And Experimental Research2019-11-28
Investigating bifidobacteria and human milk oligosaccharide composition of lactating mothers.Gabriele Andrea Lugli, Sabrina Duranti, Christian Milani, Leonardo Mancabelli, Francesca Turroni, Giulia Alessandri, Giulia Longhi, Rosaria Anzalone, Alice Viappinai, Chiara Tarracchini, Sergio Bernasconi, Chloe Yonemitsu, Lars Bode, Michael I Goran, Maria Cristina Ossiprandi, Douwe van Sinderen, Marco VenturaFEMS Microbiology Ecology2019-11-27
Nod-like receptors are critical for gut-brain axis signalling in mice.Matteo M Pusceddu, Mariana Barboza, Ciara E Keogh, Melinda Schneider, Patricia Stokes, Jessica A Sladek, Hyun Jung D Kim, Cristina Torres-Fuentes, Lily R Goldfild, Shane E Gillis, Ingrid Brust-Mascher, Gonzalo Rabasa, Kyle A Wong, Carlito Lebrilla, Mariana X Byndloss, Charles Maisonneuve, Andreas J Bäumler, Dana J Philpott, Richard L Ferrero, Kim E Barrett, Colin Reardon, Mélanie G GareauThe Journal Of Physiology2019-11-27
Urinary tract infection in pediatrics: an overview.Ana Cristina Simões E Silva, Eduardo A Oliveira, Robert H MakJornal De Pediatria2019-11-26
A mouse model for vitamin D-induced human cathelicidin antimicrobial peptide gene expression.Malcolm B Lowry, Chunxiao Guo, Yang Zhang, Mary L Fantacone, Isabelle E Logan, Yan Campbell, Weijian Zhang, Mai Le, Arup K Indra, Gitali Ganguli-Indra, Jingwei Xie, Richard L Gallo, H Phillip Koeffler, Adrian F GombartThe Journal Of Steroid Biochemistry And Molecular Biology2019-11-26
Better executive function is independently associated with full HIV suppression during combination therapy.Albert M Anderson, Josué Pérez-Santiago, Ziduo Zheng, Eugene Huang, Donald Franklin, Jennifer Iudicello, David J Moore, Ronald J Ellis, Robert K Heaton, Scott L LetendreAIDS (London, England)2019-11-26
Adaptive evolution reveals a tradeoff between growth rate and oxidative stress during naphthoquinone-based aerobic respiration.Amitesh Anand, Ke Chen, Laurence Yang, Anand V Sastry, Connor A Olson, Saugat Poudel, Yara Seif, Ying Hefner, Patrick V Phaneuf, Sibei Xu, Richard Szubin, Adam M Feist, Bernhard O PalssonProceedings Of The National Academy Of Sciences Of The United States Of America2019-11-25
PD-L1:CD80 Cis-Heterodimer Triggers the Co-stimulatory Receptor CD28 While Repressing the Inhibitory PD-1 and CTLA-4 Pathways.Yunlong Zhao, Calvin K Lee, Chia-Hao Lin, Rodrigo B Gassen, Xiaozheng Xu, Zhe Huang, Changchun Xiao, Cristina Bonorino, Li-Fan Lu, Jack D Bui, Enfu HuiImmunity2019-11-19
Reproducibility, stability, and accuracy of microbial profiles by fecal sample collection method in three distinct populations.Doratha A Byrd, Jun Chen, Emily Vogtmann, Autumn Hullings, Se Jin Song, Amnon Amir, Muhammad G Kibriya, Habibul Ahsan, Yu Chen, Heidi Nelson, Rob Knight, Jianxin Shi, Nicholas Chia, Rashmi SinhaPloS One2019-11-18
The Future of Microbiome-Based Therapeutics in Clinical Applications.Anukriti Sharma, Promi Das, Mary Buschmann, Jack A GilbertClinical Pharmacology And Therapeutics2019-11-15
Safety, Tolerability, and Effects of Sodium Bicarbonate Inhalation in Cystic Fibrosis.Carla Cristina Souza Gomez, Paloma Lopes Francisco Parazzi, Karl Jan Clinckspoor, Renan Marrichi Mauch, Francisco Benedito Teixeira Pessine, Carlos Emilio Levy, Andressa Oliveira Peixoto, Maria Ângela Gonçalves Oliveira Ribeiro, Antônio Fernando Ribeiro, Douglas Conrad, Paul Marquis Quinton, Fernando Augusto Lima Marson, José Dirceu RibeiroClinical Drug Investigation2019-11-14
Quantitative analysis of subsp proteome in response to antibiotics and during exposure to different environmental conditions.Rajoana Rojony, Matthew Martin, Anaamika Campeau, Jacob M Wozniak, David J Gonzalez, Pankaj Jaiswal, L Danelishvili, Luiz E BermudezClinical Proteomics2019-11-13
Bacteriophage targeting of gut bacterium attenuates alcoholic liver disease.Yi Duan, Cristina Llorente, Sonja Lang, Katharina Brandl, Huikuan Chu, Lu Jiang, Richard C White, Thomas H Clarke, Kevin Nguyen, Manolito Torralba, Yan Shao, Jinyuan Liu, Adriana Hernandez-Morales, Lauren Lessor, Imran R Rahman, Yukiko Miyamoto, Melissa Ly, Bei Gao, Weizhong Sun, Roman Kiesel, Felix Hutmacher, Suhan Lee, Meritxell Ventura-Cots, Francisco Bosques-Padilla, Elizabeth C Verna, Juan G Abraldes, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie L Shawcross, Samuel B Ho, Alexandre Louvet, Michael R Lucey, Philippe Mathurin, Guadalupe Garcia-Tsao, Ramon Bataller, Xin M Tu, Lars Eckmann, Wilfred A van der Donk, Ry Young, Trevor D Lawley, Peter Stärkel, David Pride, Derrick E Fouts, Bernd SchnablNature2019-11-13
Ecology and Host Identity Outweigh Evolutionary History in Shaping the Bat Microbiome.Holly L Lutz, Elliot W Jackson, Paul W Webala, Waswa S Babyesiza, Julian C Kerbis Peterhans, Terrence C Demos, Bruce D Patterson, Jack A GilbertMSystems2019-11-12
High-quality genome-scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities.Juan Nogales, Joshua Mueller, Steinn Gudmundsson, Francisco J Canalejo, Estrella Duque, Jonathan Monk, Adam M Feist, Juan Luis Ramos, Wei Niu, Bernhard O PalssonEnvironmental Microbiology2019-11-11
Comparative Genomics and Metabolomics Analyses of Clavulanic Acid-Producing Species Provides Insight Into Specialized Metabolism.Nader F AbuSara, Brandon M Piercey, Marcus A Moore, Arshad Ali Shaikh, Louis-Félix Nothias, Santosh K Srivastava, Pablo Cruz-Morales, Pieter C Dorrestein, Francisco Barona-Gómez, Kapil TahlanFrontiers In Microbiology2019-11-08
Author Correction: Environmental stimuli drive a transition from cooperation to competition in synthetic phototrophic communities.Cristal Zuñiga, Chien-Ting Li, Geng Yu, Mahmoud M Al-Bassam, Tingting Li, Liqun Jiang, Livia S Zaramela, Michael Guarnieri, Michael J Betenbaugh, Karsten ZenglerNature Microbiology2019-11-07
Learning representations of microbe-metabolite interactions.James T Morton, Alexander A Aksenov, Louis Felix Nothias, James R Foulds, Robert A Quinn, Michelle H Badri, Tami L Swenson, Marc W Van Goethem, Trent R Northen, Yoshiki Vazquez-Baeza, Mingxun Wang, Nicholas A Bokulich, Aaron Watters, Se Jin Song, Richard Bonneau, Pieter C Dorrestein, Rob KnightNature Methods2019-11-04
Home chemical and microbial transitions across urbanization.Laura-Isobel McCall, Chris Callewaert, Qiyun Zhu, Se Jin Song, Amina Bouslimani, Jeremiah J Minich, Madeleine Ernst, Jean F Ruiz-Calderon, Humberto Cavallin, Henrique S Pereira, Atila Novoselac, Jean Hernandez, Rafael Rios, OraLee H Branch, Martin J Blaser, Luciana C Paulino, Pieter C Dorrestein, Rob Knight, Maria G Dominguez-BelloNature Microbiology2019-11-04
Erythrocyte-Coated Nanoparticles Block Cytotoxic Effects of Group B β-Hemolysin/Cytolysin.Jenny Koo, Tamara Escajadillo, Liangfang Zhang, Victor Nizet, Shelley M LawrenceFrontiers In Pediatrics2019-11-01
Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity.Robert C Kaplan, Zheng Wang, Mykhaylo Usyk, Daniela Sotres-Alvarez, Martha L Daviglus, Neil Schneiderman, Gregory A Talavera, Marc D Gellman, Bharat Thyagarajan, Jee-Young Moon, Yoshiki Vázquez-Baeza, Daniel McDonald, Jessica S Williams-Nguyen, Michael C Wu, Kari E North, Justin Shaffer, Christopher C Sollecito, Qibin Qi, Carmen R Isasi, Tao Wang, Rob Knight, Robert D BurkGenome Biology2019-11-01
A generalized HIV vaccine design strategy for priming of broadly neutralizing antibody responses.Jon M Steichen, Ying-Cing Lin, Colin Havenar-Daughton, Simone Pecetta, Gabriel Ozorowski, Jordan R Willis, Laura Toy, Devin Sok, Alessia Liguori, Sven Kratochvil, Jonathan L Torres, Oleksandr Kalyuzhniy, Eleonora Melzi, Daniel W Kulp, Sebastian Raemisch, Xiaozhen Hu, Steffen M Bernard, Erik Georgeson, Nicole Phelps, Yumiko Adachi, Michael Kubitz, Elise Landais, Jeffrey Umotoy, Amanda Robinson, Bryan Briney, Ian A Wilson, Dennis R Burton, Andrew B Ward, Shane Crotty, Facundo D Batista, William R SchiefScience (New York, N.Y.)2019-10-31
Cost-Effectiveness Analysis of Screening for Hepatitis B Virus Infection in Patients With Solid Tumors Before Initiating Chemotherapy.Gauree G Konijeti, Sirisha Grandhe, Monica Tincopa, Jill A Lane, Mark G Shrime, Siddharth Singh, Rohit LoombaClinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association2019-10-31
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads.Jon G Sanders, Sergey Nurk, Rodolfo A Salido, Jeremiah Minich, Zhenjiang Z Xu, Qiyun Zhu, Cameron Martino, Marcus Fedarko, Timothy D Arthur, Feng Chen, Brigid S Boland, Greg C Humphrey, Caitriona Brennan, Karenina Sanders, James Gaffney, Kristen Jepsen, Mahdieh Khosroheidari, Cliff Green, Marlon Liyanage, Jason W Dang, Vanessa V Phelan, Robert A Quinn, Anton Bankevich, John T Chang, Tariq M Rana, Douglas J Conrad, William J Sandborn, Larry Smarr, Pieter C Dorrestein, Pavel A Pevzner, Rob KnightGenome Biology2019-10-31
Interplay of Staphylococcal and Host Proteases Promotes Skin Barrier Disruption in Netherton Syndrome.Michael R Williams, Laura Cau, Yichen Wang, Drishti Kaul, James A Sanford, Livia S Zaramela, Shadi Khalil, Anna M Butcher, Karsten Zengler, Alexander R Horswill, Christopher L Dupont, Alain Hovnanian, Richard L GalloCell Reports2019-10-29
OxyR Is a Convergent Target for Mutations Acquired during Adaptation to Oxidative Stress-Prone Metabolic States.Amitesh Anand, Ke Chen, Edward Catoiu, Anand V Sastry, Connor A Olson, Troy E Sandberg, Yara Seif, Sibei Xu, Richard Szubin, Laurence Yang, Adam M Feist, Bernhard O PalssonMolecular Biology And Evolution2019-10-28
Western Diet Promotes Intestinal Colonization by Collagenolytic Microbes and Promotes Tumor Formation After Colorectal Surgery.Sara Gaines, Jasper B van Praagh, Ashley J Williamson, Richard A Jacobson, Sanjiv Hyoju, Alexander Zaborin, Jun Mao, Hyun Y Koo, Lindsay Alpert, Marc Bissonnette, Ralph Weichselbaum, Jack Gilbert, Eugene Chang, Neil Hyman, Olga Zaborina, Benjamin D Shogan, John C AlverdyGastroenterology2019-10-23
Reply to Kalil et al., "Is Daptomycin plus Ceftaroline Associated with Better Clinical Outcomes than Standard of Care Monotherapy for Staphylococcus aureus Bacteremia?"George Sakoulas, Matthew Geriak, Fadi Haddad, Warren Rose, Kerry LaPlante, Marcus Zervos, Ravina Kullar, Victor NizetAntimicrobial Agents And Chemotherapy2019-10-22
Pass-back chain extension expands multimodular assembly line biosynthesis.Jia Jia Zhang, Xiaoyu Tang, Tao Huan, Avena C Ross, Bradley S MooreNature Chemical Biology2019-10-21
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0.Eric W Deutsch, Lydie Lane, Christopher M Overall, Nuno Bandeira, Mark S Baker, Charles Pineau, Robert L Moritz, Fernando Corrales, Sandra Orchard, Jennifer E Van Eyk, Young-Ki Paik, Susan T Weintraub, Yves Vandenbrouck, Gilbert S OmennJournal Of Proteome Research2019-10-21
Adaptive laboratory evolution of under acid stress.Bin Du, Connor A Olson, Anand V Sastry, Xin Fang, Patrick V Phaneuf, Ke Chen, Muyao Wu, Richard Szubin, Sibei Xu, Ye Gao, Ying Hefner, Adam M Feist, Bernhard O PalssonMicrobiology (Reading, England)2019-10-18
Protocol for community-created public MS/MS reference spectra within the Global Natural Products Social Molecular Networking infrastructure.Fernando Vargas, Kelly C Weldon, Nicole Sikora, Mingxun Wang, Zheng Zhang, Emily C Gentry, Morgan W Panitchpakdi, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein, Alan K JarmuschRapid Communications In Mass Spectrometry : RCM2019-10-17
Strain-Specific Metabolic Requirements Revealed by a Defined Minimal Medium for Systems Analyses of .Henrique Machado, Liam L Weng, Nicholas Dillon, Yara Seif, Michelle Holland, Jonathan E Pekar, Jonathan M Monk, Victor Nizet, Bernhard O Palsson, Adam M FeistApplied And Environmental Microbiology2019-10-16
MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities.Liu Cao, Alexey Gurevich, Kelsey L Alexander, C Benjamin Naman, Tiago Leão, Evgenia Glukhov, Tal Luzzatto-Knaan, Fernando Vargas, Robby Quinn, Amina Bouslimani, Louis Felix Nothias, Nitin K Singh, Jon G Sanders, Rodolfo A S Benitez, Luke R Thompson, Md-Nafiz Hamid, James T Morton, Alla Mikheenko, Alexander Shlemov, Anton Korobeynikov, Iddo Friedberg, Rob Knight, Kasthuri Venkateswaran, William H Gerwick, Lena Gerwick, Pieter C Dorrestein, Pavel A Pevzner, Hosein MohimaniCell Systems2019-10-16
miRNA-Microbiota Interaction in Gut Homeostasis and Colorectal Cancer.Jiayi Dong, Jesse W Tai, Li-Fan LuTrends In Cancer2019-10-14
Ultrahigh-Density Screens for Genome-Wide Yeast EMAPs in a Single Plate.Katherine Licon, John Paul Shen, Brenton P Munson, Manuel Michaca, Cole Fassino, Luke Fassino, Jason F Kreisberg, Trey IdekerMethods In Molecular Biology (Clifton, N.J.)2019-10-12
Proteomic atlas of organ vasculopathies triggered by Staphylococcus aureus sepsis.Alejandro Gómez Toledo, Gregory Golden, Alexandre Rosa Campos, Hector Cuello, James Sorrentino, Nathan Lewis, Nissi Varki, Victor Nizet, Jeffrey W Smith, Jeffrey D EskoNature Communications2019-10-11
Species abundance information improves sequence taxonomy classification accuracy.Benjamin D Kaehler, Nicholas A Bokulich, Daniel McDonald, Rob Knight, J Gregory Caporaso, Gavin A HuttleyNature Communications2019-10-11
The Candida albicans exotoxin candidalysin promotes alcohol-associated liver disease.Huikuan Chu, Yi Duan, Sonja Lang, Lu Jiang, Yanhan Wang, Cristina Llorente, Jinyuan Liu, Selene Mogavero, Francisco Bosques-Padilla, Juan G Abraldes, Victor Vargas, Xin M Tu, Ling Yang, Xiaohua Hou, Bernhard Hube, Peter Stärkel, Bernd SchnablJournal Of Hepatology2019-10-10
Letter: probiotics? Yes, but which ones? Authors' reply.Saumya Jayakumar, Rohit LoombaAlimentary Pharmacology & Therapeutics2019-10-09
Increases in compulsivity, inflammation, and neural injury in HIV transgenic rats with escalated methamphetamine self-administration under extended-access conditions.Giordano de Guglielmo, Yu Fu, Jihuan Chen, Estefania Larrosa, Ivy Hoang, Tomoya Kawamura, Irene Lorrai, Barry Zorman, Joseph Bryant, Olivier George, Pavel Sumazin, Celine Lefebvre, Vez Repunte-Canonigo, Pietro Paolo SannaBrain Research2019-10-09
Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny.Katherine R Amato, Elizabeth K Mallott, Daniel McDonald, Nathaniel J Dominy, Tony Goldberg, Joanna E Lambert, Larissa Swedell, Jessica L Metcalf, Andres Gomez, Gillian A O Britton, Rebecca M Stumpf, Steven R Leigh, Rob KnightGenome Biology2019-10-08
Metaviral SPAdes: assembly of viruses from metagenomic data.Dmitry Antipov, Mikhail Raiko, Alla Lapidus, Pavel A PevznerBioinformatics (Oxford, England)2019-10-08
Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom.Sarah R Smith, Chris L Dupont, James K McCarthy, Jared T Broddrick, Miroslav Oborník, Aleš Horák, Zoltán Füssy, Jaromír Cihlář, Sabrina Kleessen, Hong Zheng, John P McCrow, Kim K Hixson, Wagner L Araújo, Adriano Nunes-Nesi, Alisdair Fernie, Zoran Nikoloski, Bernhard O Palsson, Andrew E AllenNature Communications2019-10-07
Environmental stimuli drive a transition from cooperation to competition in synthetic phototrophic communities.Cristal Zuñiga, Chien-Ting Li, Geng Yu, Mahmoud M Al-Bassam, Tingting Li, Liqun Jiang, Livia S Zaramela, Michael Guarnieri, Michael J Betenbaugh, Karsten ZenglerNature Microbiology2019-10-07
Wirelessly observed therapy compared to directly observed therapy to confirm and support tuberculosis treatment adherence: A randomized controlled trial.Sara H Browne, Anya Umlauf, Amanda J Tucker, Julie Low, Kathleen Moser, Jonathan Gonzalez Garcia, Charles A Peloquin, Terrence Blaschke, Florin Vaida, Constance A BensonPLoS Medicine2019-10-04
Discovery of New Inhibitors of Hepatitis C Virus NS3/4A Protease and Its D168A Mutant.Ittipat Meewan, Xingquan Zhang, Suchismita Roy, Carlo Ballatore, Anthony J O'Donoghue, Robert T Schooley, Ruben AbagyanACS Omega2019-10-02
Letrozole treatment of pubertal female mice results in activational effects on reproduction, metabolism and the gut microbiome.Pablo Arroyo, Bryan S Ho, Lillian Sau, Scott T Kelley, Varykina G ThackrayPloS One2019-09-30
Voices in methods development.Polina Anikeeva, Edward Boyden, Clifford Brangwynne, Ibrahim I Cissé, Oliver Fiehn, Petra Fromme, Anne-Claude Gingras, Casey S Greene, Edith Heard, Stefan W Hell, Elizabeth Hillman, Grant Jay Jensen, Rachel Karchin, Laura L Kiessling, Benjamin P Kleinstiver, Rob Knight, Philipp Kukura, Madeline A Lancaster, Nicholas Loman, Loren Looger, Emma Lundberg, Qingming Luo, Atsushi Miyawaki, Eugene W Myers, Garry P Nolan, Paola Picotti, Wolf Reik, Markus Sauer, Alex K Shalek, Jay Shendure, Nikolai Slavov, Amos Tanay, Olga Troyanskaya, David van Valen, Hong-Wei Wang, Chengqi Yi, Peng Yin, Magdalena Zernicka-Goetz, Xiaowei ZhuangNature Methods2019-09-29
Utilizing genome-scale models to optimize nutrient supply for sustained algal growth and lipid productivity.Chien-Ting Li, Jacob Yelsky, Yiqun Chen, Cristal Zuñiga, Richard Eng, Liqun Jiang, Alison Shapiro, Kai-Wen Huang, Karsten Zengler, Michael J BetenbaughNPJ Systems Biology And Applications2019-09-24
Altered Gut Microbiota and Host Metabolite Profiles in Women With Human Immunodeficiency Virus.Zheng Wang, Mykhaylo Usyk, Christopher C Sollecito, Yunping Qiu, Jessica Williams-Nguyen, Simin Hua, Ana Gradissimo, Tao Wang, Xiaonan Xue, Irwin J Kurland, Klaus Ley, Alan L Landay, Kathryn Anastos, Rob Knight, Robert C Kaplan, Robert D Burk, Qibin QiClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2019-09-24
Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis.Alexey V Melnik, Yoshiki Vázquez-Baeza, Alexander A Aksenov, Embriette Hyde, Andrew C McAvoy, Mingxun Wang, Ricardo R da Silva, Ivan Protsyuk, Jason V Wu, Amina Bouslimani, Yan Wei Lim, Tal Luzzatto-Knaan, William Comstock, Robert A Quinn, Richard Wong, Greg Humphrey, Gail Ackermann, Timothy Spivey, Sharon S Brouha, Nuno Bandeira, Grace Y Lin, Forest Rohwer, Douglas J Conrad, Theodore Alexandrov, Rob Knight, Pieter C Dorrestein, Neha GargMSystems2019-09-24
Acoustic Nanomotors for Detection of Human Papillomavirus-Associated Head and Neck Cancer.Jesse R Qualliotine, Gulcin Bolat, Mara Beltrán-Gastélum, Berta Esteban-Fernández de Ávila, Joseph Wang, Joseph A CalifanoOtolaryngology--head And Neck Surgery : Official Journal Of American Academy Of Otolaryngology-Head And Neck Surgery2019-09-24
Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates.Livia S Zaramela, Cameron Martino, Frederico Alisson-Silva, Steven D Rees, Sandra L Diaz, Léa Chuzel, Mehul B Ganatra, Christopher H Taron, Patrick Secrest, Cristal Zuñiga, Jianbo Huang, Dionicio Siegel, Geoffrey Chang, Ajit Varki, Karsten ZenglerNature Microbiology2019-09-23
Grindr Users Take More Risks, but Are More Open to Human Immunodeficiency Virus (HIV) Pre-exposure Prophylaxis: Could This Dating App Provide a Platform for HIV Prevention Outreach?Martin Hoenigl, Susan J Little, David Grelotti, Britt Skaathun, Gabriel A Wagner, Nadir Weibel, Jamila K Stockman, Davey M SmithClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2019-09-20
Computationally Designed Peptides for Zika Virus Detection: An Incremental Construction Approach.Marcello Mascini, Emre Dikici, Marta Robles Mañueco, Julio A Perez-Erviti, Sapna K Deo, Dario Compagnone, Joseph Wang, José M Pingarrón, Sylvia DaunertBiomolecules2019-09-17
Multiple genes recruited from hormone pathways partition maize diterpenoid defences.Yezhang Ding, Katherine M Murphy, Elly Poretsky, Sibongile Mafu, Bing Yang, Si Nian Char, Shawn A Christensen, Evan Saldivar, Mengxi Wu, Qiang Wang, Lexiang Ji, Robert J Schmitz, Karl A Kremling, Edward S Buckler, Zhouxin Shen, Steven P Briggs, Jörg Bohlmann, Andrew Sher, Gabriel Castro-Falcon, Chambers C Hughes, Alisa Huffaker, Philipp Zerbe, Eric A SchmelzNature Plants2019-09-16
Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome.Carrie E Jung, Jessica Chopyk, Ji Hyun Shin, Emily S Lukacz, Linda Brubaker, Leila K Schwanemann, Rob Knight, Alan J Wolfe, David T PrideScientific Reports2019-09-16
Molecular Docking of Broad-Spectrum Antibodies on Hemagglutinins of Influenza A Virus.Khanh Pb Le, Phuc-Chau Do, Rommie E Amaro, Ly LeEvolutionary Bioinformatics Online2019-09-16
Macrocyclic colibactin induces DNA double-strand breaks via copper-mediated oxidative cleavage.Zhong-Rui Li, Jie Li, Wenlong Cai, Jennifer Y H Lai, Shaun M K McKinnie, Wei-Peng Zhang, Bradley S Moore, Wenjun Zhang, Pei-Yuan QianNature Chemistry2019-09-16
The effect of legume supplementation on the gut microbiota in rural Malawian infants aged 6 to 12 months.M Isabel Ordiz, Stefan Janssen, Greg Humphrey, Gail Ackermann, Kevin Stephenson, Sophia Agapova, Oscar Divala, Yankho Kaimila, Ken Maleta, Caroline Zhong, Rob Knight, Indi Trehan, Phillip I Tarr, Brigida Rusconi, Mark J ManaryThe American Journal Of Clinical Nutrition2019-09-14
TADA: phylogenetic augmentation of microbiome samples enhances phenotype classification.Erfan Sayyari, Ban Kawas, Siavash MirarabBioinformatics (Oxford, England)2019-09-13
Response to Comment on "A commensal strain of protects against skin neoplasia" by Nakatsuji .Teruaki Nakatsuji, William Fenical, Richard L GalloScience Advances2019-09-11
Modification of RSF1010-Based Broad-Host-Range Plasmids for Improved Conjugation and Cyanobacterial Bioprospecting.Bryan Bishé, Arnaud Taton, James W GoldenIScience2019-09-10
The Virome of Cerebrospinal Fluid: Viruses Where We Once Thought There Were None.Chandrabali Ghose, Melissa Ly, Leila K Schwanemann, Ji Hyun Shin, Katayoon Atab, Jeremy J Barr, Mark Little, Robert T Schooley, Jessica Chopyk, David T PrideFrontiers In Microbiology2019-09-06
Challenges in the construction of knowledge bases for human microbiome-disease associations.Varsha Dave Badal, Dustin Wright, Yannis Katsis, Ho-Cheol Kim, Austin D Swafford, Rob Knight, Chun-Nan HsuMicrobiome2019-09-05
Expanding the scope and scale of microbiome research.Rob Knight, Ruth E Ley, Jeroen Raes, Elizabeth A GriceGenome Biology2019-09-05
Gut microbiome in serious mental illnesses: A systematic review and critical evaluation.Tanya T Nguyen, Hugh Hathaway, Tomasz Kosciolek, Rob Knight, Dilip V JesteSchizophrenia Research2019-09-05
Sialic acid-binding immunoglobulin-like lectins (Siglecs) detect self-associated molecular patterns to regulate immune responses.Heinz Läubli, Ajit VarkiCellular And Molecular Life Sciences : CMLS2019-09-04
The Origin, Succession, and Predicted Metabolism of Bacterial Communities Associated with Leaf Decomposition.Sara L Jackrel, Jack A Gilbert, J Timothy WoottonMBio2019-09-03
Microbial Exchange via Fomites and Implications for Human Health.Brent Stephens, Parham Azimi, Megan S Thoemmes, Mohammad Heidarinejad, Joseph G Allen, Jack A GilbertCurrent Pollution Reports2019-08-31
Comparing Analytical Methods for the Gut Microbiome and Aging: Gut Microbial Communities and Body Weight in the Osteoporotic Fractures in Men (MrOS) Study.Michelle Shardell, Neeta Parimi, Lisa Langsetmo, Toshiko Tanaka, Lingjing Jiang, Eric Orwoll, James M Shikany, Deborah M Kado, Peggy M CawthonThe Journals Of Gerontology. Series A, Biological Sciences And Medical Sciences2019-08-30
Cytotoxic Microcolin Lipopeptides from the Marine Cyanobacterium .Hao-Bing Yu, Evgenia Glukhov, Yueying Li, Arihiro Iwasaki, Lena Gerwick, Pieter C Dorrestein, Bing-Hua Jiao, William H GerwickJournal Of Natural Products2019-08-30
Author Correction: Immune-orthogonal orthologues of AAV capsids and of Cas9 circumvent the immune response to the administration of gene therapy.Ana M Moreno, Nathan Palmer, Fernando Alemán, Genghao Chen, Andrew Pla, Ning Jiang, Wei Leong Chew, Mansun Law, Prashant MaliNature Biomedical Engineering2019-08-29
Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons.Baozhan Wang, Wei Qin, Yi Ren, Xue Zhou, Man-Young Jung, Ping Han, Emiley A Eloe-Fadrosh, Meng Li, Yue Zheng, Lu Lu, Xin Yan, Junbin Ji, Yang Liu, Linmeng Liu, Cheryl Heiner, Richard Hall, Willm Martens-Habbena, Craig W Herbold, Sung-Keun Rhee, Douglas H Bartlett, Li Huang, Anitra E Ingalls, Michael Wagner, David A Stahl, Zhongjun JiaThe ISME Journal2019-08-28
Systems Biology and Pangenome of O-Antigens.Yara Seif, Jonathan M Monk, Henrique Machado, Erol Kavvas, Bernhard O PalssonMBio2019-08-27
Precise in vivo genome editing via single homology arm donor mediated intron-targeting gene integration for genetic disease correction.Keiichiro Suzuki, Mako Yamamoto, Reyna Hernandez-Benitez, Zhe Li, Christopher Wei, Rupa Devi Soligalla, Emi Aizawa, Fumiyuki Hatanaka, Masakazu Kurita, Pradeep Reddy, Alejandro Ocampo, Tomoaki Hishida, Masahiro Sakurai, Amy N Nemeth, Estrella Nuñez Delicado, Josep M Campistol, Pierre Magistretti, Pedro Guillen, Concepcion Rodriguez Esteban, Jianhui Gong, Yilin Yuan, Ying Gu, Guang-Hui Liu, Carlos López-Otín, Jun Wu, Kun Zhang, Juan Carlos Izpisua BelmonteCell Research2019-08-23
TreeCluster: Clustering biological sequences using phylogenetic trees.Metin Balaban, Niema Moshiri, Uyen Mai, Xingfan Jia, Siavash MirarabPloS One2019-08-22
Antigen-Specific Mucosal Immunity Regulates Development of Intestinal Bacteria-Mediated Diseases.Kosuke Fujimoto, Yunosuke Kawaguchi, Masaki Shimohigoshi, Yoshiyuki Gotoh, Yoshiko Nakano, Yuki Usui, Tetsuya Hayashi, Yasumasa Kimura, Miho Uematsu, Takuya Yamamoto, Yukihiro Akeda, Joon Haeng Rhee, Yoshikazu Yuki, Ken J Ishii, Sheila E Crowe, Peter B Ernst, Hiroshi Kiyono, Satoshi UematsuGastroenterology2019-08-21
A Microbiome-Based Index for Assessing Skin Health and Treatment Effects for Atopic Dermatitis in Children.Zheng Sun, Shi Huang, Pengfei Zhu, Feng Yue, Helen Zhao, Ming Yang, Yueqing Niu, Gongchao Jing, Xiaoquan Su, Huiying Li, Chris Callewaert, Rob Knight, Jiquan Liu, Ed Smith, Karl Wei, Jian XuMSystems2019-08-20
Intestinal Fungal Dysbiosis and Systemic Immune Response to Fungi in Patients With Alcoholic Hepatitis.Sonja Lang, Yi Duan, Jinyuan Liu, Manolito G Torralba, Claire Kuelbs, Meritxell Ventura-Cots, Juan G Abraldes, Francisco Bosques-Padilla, Elizabeth C Verna, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie Shawcross, Michael R Lucey, Alexandre Louvet, Philippe Mathurin, Guadalupe Garcia-Tsao, Samuel B Ho, Xin M Tu, Ramon Bataller, Peter Stärkel, Derrick E Fouts, Bernd SchnablHepatology (Baltimore, Md.)2019-08-20
Inactivation of a Mismatch-Repair System Diversifies Genotypic Landscape of During Adaptive Laboratory Evolution.Minjeong Kang, Kangsan Kim, Donghui Choe, Suhyung Cho, Sun Chang Kim, Bernhard Palsson, Byung-Kwan ChoFrontiers In Microbiology2019-08-16
Invasive Pneumococcal Disease in Children's Hospitals: 2014-2017.Sheldon L Kaplan, William J Barson, Philana Ling Lin, José R Romero, John S Bradley, Tina Q Tan, Pia S Pannaraj, Laurence B Givner, Kristina G HultenPediatrics2019-08-16
Retinoids Enhance the Expression of Cathelicidin Antimicrobial Peptide during Reactive Dermal Adipogenesis.Marc C Liggins, Fengwu Li, Ling-Juan Zhang, Tatsuya Dokoshi, Richard L GalloJournal Of Immunology (Baltimore, Md. : 1950)2019-08-16
A Network of SLC and ABC Transporter and DME Genes Involved in Remote Sensing and Signaling in the Gut-Liver-Kidney Axis.Sara Brin Rosenthal, Kevin T Bush, Sanjay K NigamScientific Reports2019-08-15
Defining the relationship between vaginal and urinary microbiomes.Yuko M Komesu, Darrell L Dinwiddie, Holly E Richter, Emily S Lukacz, Vivian W Sung, Nazema Y Siddiqui, Halina M Zyczynski, Beri Ridgeway, Rebecca G Rogers, Lily A Arya, Donna Mazloomdoost, Josh Levy, Benjamin Carper, Marie G Gantz, American Journal Of Obstetrics And Gynecology2019-08-14
Antibodies to Enteroviruses in Cerebrospinal Fluid of Patients with Acute Flaccid Myelitis.Nischay Mishra, Terry Fei Fan Ng, Rachel L Marine, Komal Jain, James Ng, Riddhi Thakkar, Adrian Caciula, Adam Price, Joel A Garcia, Jane C Burns, Kiran T Thakur, Kimbell L Hetzler, Janell A Routh, Jennifer L Konopka-Anstadt, W Allan Nix, Rafal Tokarz, Thomas Briese, M Steven Oberste, W Ian LipkinMBio2019-08-13
Age and Mothers: Potent Influences of Children's Skin Microbiota.Ting Zhu, Xing Liu, Fan-Qi Kong, Yuan-Yuan Duan, Alyson L Yee, Madeline Kim, Carlos Galzote, Jack A Gilbert, Zhe-Xue QuanThe Journal Of Investigative Dermatology2019-08-13
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Gabriel A Al-Ghalith, Harriet Alexander, Eric J Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E Bisanz, Kyle Bittinger, Asker Brejnrod, Colin J Brislawn, C Titus Brown, Benjamin J Callahan, Andrés Mauricio Caraballo-Rodríguez, John Chase, Emily K Cope, Ricardo Da Silva, Christian Diener, Pieter C Dorrestein, Gavin M Douglas, Daniel M Durall, Claire Duvallet, Christian F Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M Gauglitz, Sean M Gibbons, Deanna L Gibson, Antonio Gonzalez, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin A Huttley, Stefan Janssen, Alan K Jarmusch, Lingjing Jiang, Benjamin D Kaehler, Kyo Bin Kang, Christopher R Keefe, Paul Keim, Scott T Kelley, Dan Knights, Irina Koester, Tomasz Kosciolek, Jorden Kreps, Morgan G I Langille, Joslynn Lee, Ruth Ley, Yong-Xin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J McIver, Alexey V Melnik, Jessica L Metcalf, Sydney C Morgan, Jamie T Morton, Ahmad Turan Naimey, Jose A Navas-Molina, Louis Felix Nothias, Stephanie B Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary Lai Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam Rivers, Michael S Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R Spear, Austin D Swafford, Luke R Thompson, Pedro J Torres, Pauline Trinh, Anupriya Tripathi, Peter J Turnbaugh, Sabah Ul-Hasan, Justin J J van der Hooft, Fernando Vargas, Yoshiki Vázquez-Baeza, Emily Vogtmann, Max von Hippel, William Walters, Yunhu Wan, Mingxun Wang, Jonathan Warren, Kyle C Weber, Charles H D Williamson, Amy D Willis, Zhenjiang Zech Xu, Jesse R Zaneveld, Yilong Zhang, Qiyun Zhu, Rob Knight, J Gregory CaporasoNature Biotechnology2019-08-11
The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology.Troy E Sandberg, Michael J Salazar, Liam L Weng, Bernhard O Palsson, Adam M FeistMetabolic Engineering2019-08-08
Helicobacter pylori Infection. Reply.Sheila E CroweThe New England Journal Of Medicine2019-08-08
Perspective: Dietary Biomarkers of Intake and Exposure-Exploration with Omics Approaches.Padma Maruvada, Johanna W Lampe, David S Wishart, Dinesh Barupal, Deirdra N Chester, Dylan Dodd, Yannick Djoumbou-Feunang, Pieter C Dorrestein, Lars O Dragsted, John Draper, Linda C Duffy, Johanna T Dwyer, Nancy J Emenaker, Oliver Fiehn, Robert E Gerszten, Frank B Hu, Robert W Karp, David M Klurfeld, Maren R Laughlin, A Roger Little, Christopher J Lynch, Steven C Moore, Holly L Nicastro, Diane M O'Brien, José M Ordovás, Stavroula K Osganian, Mary Playdon, Ross Prentice, Daniel Raftery, Nichole Reisdorph, Helen M Roche, Sharon A Ross, Shengmin Sang, Augustin Scalbert, Pothur R Srinivas, Steven H ZeiselAdvances In Nutrition (Bethesda, Md.)2019-08-07
Reply to Sun et al., "Identifying Composition Novelty in Microbiome Studies: Improvement of Prediction Accuracy".Xiaoquan Su, Gongchao Jing, Daniel McDonald, Honglei Wang, Zengbin Wang, Antonio Gonzalez, Zheng Sun, Shi Huang, Jose Navas, Rob Knight, Jian XuMBio2019-08-06
Heterogenous Populations of Tissue-Resident CD8 T Cells Are Generated in Response to Infection and Malignancy.J Justin Milner, Clara Toma, Zhaoren He, Nadia S Kurd, Quynh P Nguyen, Bryan McDonald, Lauren Quezada, Christella E Widjaja, Deborah A Witherden, John T Crowl, Laura A Shaw, Gene W Yeo, John T Chang, Kyla D Omilusik, Ananda W GoldrathImmunity2019-08-04
Photopiperazines A-D, Photosensitive Interconverting Diketopiperazines with Significant and Selective Activity against U87 Glioblastoma Cells, from a Rare, Marine-Derived Actinomycete of the Family Streptomycetaceae.Min Cheol Kim, Reiko Cullum, Henrique Machado, Alexander J Smith, Inho Yang, Jeffrey J Rodvold, William FenicalJournal Of Natural Products2019-08-01
Targeting Interleukin(IL)-30/IL-27p28 signaling in cancer stem-like cells and host environment synergistically inhibits prostate cancer growth and improves survival.Carlo Sorrentino, Zhinan Yin, Stefania Ciummo, Paola Lanuti, Li-Fan Lu, Marco Marchisio, Matteo Bellone, Emma Di CarloJournal For Immunotherapy Of Cancer2019-07-31
Molecular characterization and functional analysis of the Schistosoma mekongi Ca-dependent cysteine protease (calpain).Salisa Chaimon, Yanin Limpanont, Onrapak Reamtong, Sumate Ampawong, Orawan Phuphisut, Phiraphol Chusongsang, Jiraporn Ruangsittichai, Usa Boonyuen, Dorn Watthanakulpanich, Anthony J O'Donoghue, Conor R Caffrey, Poom AdisakwattanaParasites & Vectors2019-07-30
Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages.Julia M Gauglitz, Christine M Aceves, Alexander A Aksenov, Gajender Aleti, Jehad Almaliti, Amina Bouslimani, Elizabeth A Brown, Anaamika Campeau, Andrés Mauricio Caraballo-Rodríguez, Rama Chaar, Ricardo R da Silva, Alyssa M Demko, Francesca Di Ottavio, Emmanuel Elijah, Madeleine Ernst, L Paige Ferguson, Xavier Holmes, Alan K Jarmusch, Lingjing Jiang, Kyo Bin Kang, Irina Koester, Brian Kwan, Jie Li, Yueying Li, Alexey V Melnik, Carlos Molina-Santiago, Bohan Ni, Aaron L Oom, Morgan W Panitchpakdi, Daniel Petras, Robert Quinn, Nicole Sikora, Katharina Spengler, Bahar Teke, Anupriya Tripathi, Sabah Ul-Hasan, Justin J J van der Hooft, Fernando Vargas, Alison Vrbanac, Anthony Q Vu, Steven C Wang, Kelly Weldon, Kayla Wilson, Jacob M Wozniak, Michael Yoon, Nuno Bandeira, Pieter C DorresteinFood Chemistry2019-07-30
Microbial Similarity between Students in a Common Dormitory Environment Reveals the Forensic Potential of Individual Microbial Signatures.Miles Richardson, Neil Gottel, Jack A Gilbert, Simon LaxMBio2019-07-30
Postoperative urinary tract infection after urogynecologic surgery: timing and uropathogens.Carrie E Jung, Linda BrubakerInternational Urogynecology Journal2019-07-29
Long-lasting analgesia via targeted in situ repression of Na1.7 in mice.Ana M Moreno, Fernando Alemán, Glaucilene F Catroli, Matthew Hunt, Michael Hu, Amir Dailamy, Andrew Pla, Sarah A Woller, Nathan Palmer, Udit Parekh, Daniella McDonald, Amanda J Roberts, Vanessa Goodwill, Ian Dryden, Robert F Hevner, Lauriane Delay, Gilson Gonçalves Dos Santos, Tony L Yaksh, Prashant MaliScience Translational Medicine2019-07-28
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Gabriel A Al-Ghalith, Harriet Alexander, Eric J Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E Bisanz, Kyle Bittinger, Asker Brejnrod, Colin J Brislawn, C Titus Brown, Benjamin J Callahan, Andrés Mauricio Caraballo-Rodríguez, John Chase, Emily K Cope, Ricardo Da Silva, Christian Diener, Pieter C Dorrestein, Gavin M Douglas, Daniel M Durall, Claire Duvallet, Christian F Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M Gauglitz, Sean M Gibbons, Deanna L Gibson, Antonio Gonzalez, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin A Huttley, Stefan Janssen, Alan K Jarmusch, Lingjing Jiang, Benjamin D Kaehler, Kyo Bin Kang, Christopher R Keefe, Paul Keim, Scott T Kelley, Dan Knights, Irina Koester, Tomasz Kosciolek, Jorden Kreps, Morgan G I Langille, Joslynn Lee, Ruth Ley, Yong-Xin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J McIver, Alexey V Melnik, Jessica L Metcalf, Sydney C Morgan, Jamie T Morton, Ahmad Turan Naimey, Jose A Navas-Molina, Louis Felix Nothias, Stephanie B Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary Lai Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam Rivers, Michael S Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R Spear, Austin D Swafford, Luke R Thompson, Pedro J Torres, Pauline Trinh, Anupriya Tripathi, Peter J Turnbaugh, Sabah Ul-Hasan, Justin J J van der Hooft, Fernando Vargas, Yoshiki Vázquez-Baeza, Emily Vogtmann, Max von Hippel, William Walters, Yunhu Wan, Mingxun Wang, Jonathan Warren, Kyle C Weber, Charles H D Williamson, Amy D Willis, Zhenjiang Zech Xu, Jesse R Zaneveld, Yilong Zhang, Qiyun Zhu, Rob Knight, J Gregory CaporasoNature Biotechnology2019-07-26
Surprising synergy of dual translation inhibition vs. Acinetobacter baumannii and other multidrug-resistant bacterial pathogens.Nicholas Dillon, Michelle Holland, Hannah Tsunemoto, Bryan Hancock, Ingrid Cornax, Joe Pogliano, George Sakoulas, Victor NizetEBioMedicine2019-07-25
Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks.Adam Rule, Amanda Birmingham, Cristal Zuniga, Ilkay Altintas, Shih-Cheng Huang, Rob Knight, Niema Moshiri, Mai H Nguyen, Sara Brin Rosenthal, Fernando Pérez, Peter W RosePLoS Computational Biology2019-07-25
Modelling approaches for studying the microbiome.Manish Kumar, Boyang Ji, Karsten Zengler, Jens NielsenNature Microbiology2019-07-23
Immune-orthogonal orthologues of AAV capsids and of Cas9 circumvent the immune response to the administration of gene therapy.Ana M Moreno, Nathan Palmer, Fernando Alemán, Genghao Chen, Andrew Pla, Ning Jiang, Wei Leong Chew, Mansun Law, Prashant MaliNature Biomedical Engineering2019-07-22
Author Correction: Farm-like indoor microbiota in non-farm homes protects children from asthma development.Pirkka V Kirjavainen, Anne M Karvonen, Rachel I Adams, Martin Täubel, Marjut Roponen, Pauli Tuoresmäki, Georg Loss, Balamuralikrishna Jayaprakash, Martin Depner, Markus Johannes Ege, Harald Renz, Petra Ina Pfefferle, Bianca Schaub, Roger Lauener, Anne Hyvärinen, Rob Knight, Dick J J Heederik, Erika von Mutius, Juha PekkanenNature Medicine2019-07-19
Human Milk Oligosaccharide Composition Is Associated With Excessive Weight Gain During Exclusive Breastfeeding-An Explorative Study.Melanie W Larsson, Mads V Lind, Rikke Pilmann Laursen, Chloe Yonemitsu, Anni Larnkjær, Christian Mølgaard, Kim F Michaelsen, Lars BodeFrontiers In Pediatrics2019-07-18
Safety and Efficacy of Ceftazidime-Avibactam Plus Metronidazole in the Treatment of Children ≥3 Months to <18 Years With Complicated Intra-Abdominal Infection: Results From a Phase 2, Randomized, Controlled Trial.John S Bradley, Helen Broadhurst, Karen Cheng, Maria Mendez, Paul Newell, Martin Prchlik, Gregory G Stone, Angela K Talley, Margaret Tawadrous, Dalia Wajsbrot, Katrina Yates, Antonina Zuzova, Annie GardnerThe Pediatric Infectious Disease Journal2019-07-16
MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools.Madeleine Ernst, Kyo Bin Kang, Andrés Mauricio Caraballo-Rodríguez, Louis-Felix Nothias, Joe Wandy, Christopher Chen, Mingxun Wang, Simon Rogers, Marnix H Medema, Pieter C Dorrestein, Justin J J van der HooftMetabolites2019-07-16
Inflammasome inhibition blocks cardiac glycoside cell toxicity.Doris L LaRock, Jenna S Sands, Ethan Ettouati, Marine Richard, Paul J Bushway, Eric D Adler, Victor Nizet, Christopher N LaRockThe Journal Of Biological Chemistry2019-07-12
Meroindenon and Merochlorins E and F, Antibacterial Meroterpenoids from a Marine-Derived Sediment Bacterium of the Genus .Min-Ji Ryu, Sunghoon Hwang, Sojeong Kim, Inho Yang, Dong-Chan Oh, Sang-Jip Nam, William FenicalOrganic Letters2019-07-12
The molecular architecture of engulfment during sporulation.Kanika Khanna, Javier Lopez-Garrido, Ziyi Zhao, Reika Watanabe, Yuan Yuan, Joseph Sugie, Kit Pogliano, Elizabeth VillaELife2019-07-08
Inhibition of Pathogen Adhesion by Bacterial Outer Membrane-Coated Nanoparticles.Yue Zhang, Yijie Chen, Christopher Lo, Jia Zhuang, Pavimol Angsantikul, Qiangzhe Zhang, Xiaoli Wei, Zhidong Zhou, Marygorret Obonyo, Ronnie H Fang, Weiwei Gao, Liangfang ZhangAngewandte Chemie (International Ed. In English)2019-07-04
Cellular responses to reactive oxygen species are predicted from molecular mechanisms.Laurence Yang, Nathan Mih, Amitesh Anand, Joon Ho Park, Justin Tan, James T Yurkovich, Jonathan M Monk, Colton J Lloyd, Troy E Sandberg, Sang Woo Seo, Donghyuk Kim, Anand V Sastry, Patrick Phaneuf, Ye Gao, Jared T Broddrick, Ke Chen, David Heckmann, Richard Szubin, Ying Hefner, Adam M Feist, Bernhard O PalssonProceedings Of The National Academy Of Sciences Of The United States Of America2019-07-03
Hyaluronan Degradation by Cemip Regulates Host Defense against Staphylococcus aureus Skin Infection.Tatsuya Dokoshi, Ling-Juan Zhang, Fengwu Li, Teruaki Nakatsuji, Anna Butcher, Hiroyuki Yoshida, Masayuki Shimoda, Yasunori Okada, Richard L GalloCell Reports2019-07-03
Associations between fungal and bacterial microbiota of airways and asthma endotypes.Anukriti Sharma, Bharathi Laxman, Edward T Naureckas, D Kyle Hogarth, Anne I Sperling, Julian Solway, Carole Ober, Jack A Gilbert, Steven R WhiteThe Journal Of Allergy And Clinical Immunology2019-07-03
Assessing Specialized Metabolite Diversity in the Cosmopolitan Plant Genus L.Madeleine Ernst, Louis-Félix Nothias, Justin J J van der Hooft, Ricardo R Silva, C Haris Saslis-Lagoudakis, Olwen M Grace, Karen Martinez-Swatson, Gustavo Hassemer, Luís A Funez, Henrik T Simonsen, Marnix H Medema, Dan Staerk, Niclas Nilsson, Paola Lovato, Pieter C Dorrestein, Nina RønstedFrontiers In Plant Science2019-07-02
Associations of the Fecal Microbial Proteome Composition and Proneness to Diet-induced Obesity.Hao Q Tran, Robert H Mills, Nicole V Peters, Mary K Holder, Geert J de Vries, Rob Knight, Benoit Chassaing, David J Gonzalez, Andrew T GewirtzMolecular & Cellular Proteomics : MCP2019-07-01
Chronic Joint Pain 3 Years after Chikungunya Virus Infection Largely Characterized by Relapsing-remitting Symptoms.Sarah R Tritsch, Liliana Encinales, Nelly Pacheco, Andres Cadena, Carlos Cure, Elizabeth McMahon, Hugh Watson, Alexandra Porras Ramirez, Alejandro Rico Mendoza, Guangzhao Li, Kunal Khurana, Juan Jose Jaller-Raad, Stella Mejia Castillo, Onaldo Barrios Taborda, Juan Jose Jaller-Char, Lil Avendaño Echavez, Dennys Jiménez, Andres Gonzalez Coba, Magda Alarcon Gomez, Dores Ariza Orozco, Eyda Bravo, Victor Martinez, Brenda Guerra, Gary Simon, Gary S Firestein, Aileen Y ChangThe Journal Of Rheumatology2019-07-01
Quantitative analysis of the yeast pheromone pathway.James P Shellhammer, Amy E Pomeroy, Yang Li, Lorena Dujmusic, Timothy C Elston, Nan Hao, Henrik G DohlmanYeast (Chichester, England)2019-06-27
A antibiotic modulates human skin microbiota composition in hair follicles.Jan Claesen, Jennifer B Spagnolo, Stephany Flores Ramos, Kenji L Kurita, Allyson L Byrd, Alexander A Aksenov, Alexey V Melnik, Weng R Wong, Shuo Wang, Ryan D Hernandez, Mohamed S Donia, Pieter C Dorrestein, Heidi H Kong, Julia A Segre, Roger G Linington, Michael A Fischbach, Katherine P LemonScience Translational Medicine2019-06-27
Surfactant Charge Modulates Structure and Stability of Lipase-Embedded Monolayers at Marine-Relevant Aerosol Surfaces.Man Luo, Abigail C Dommer, Jamie M Schiffer, Donald J Rez, Andrew R Mitchell, Rommie E Amaro, Vicki H GrassianLangmuir : The ACS Journal Of Surfaces And Colloids2019-06-25
redbiom: a Rapid Sample Discovery and Feature Characterization System.Daniel McDonald, Benjamin Kaehler, Antonio Gonzalez, Jeff DeReus, Gail Ackermann, Clarisse Marotz, Gavin Huttley, Rob KnightMSystems2019-06-25
IL-4Rα Blockade by Dupilumab Decreases Staphylococcus aureus Colonization and Increases Microbial Diversity in Atopic Dermatitis.Chris Callewaert, Teruaki Nakatsuji, Rob Knight, Tomasz Kosciolek, Alison Vrbanac, Paul Kotol, Marius Ardeleanu, Thomas Hultsch, Emma Guttman-Yassky, Robert Bissonnette, Jonathan I Silverberg, James Krueger, Alan Menter, Neil M H Graham, Gianluca Pirozzi, Jennifer D Hamilton, Richard L GalloThe Journal Of Investigative Dermatology2019-06-25
Quantifying and Understanding Well-to-Well Contamination in Microbiome Research.Jeremiah J Minich, Jon G Sanders, Amnon Amir, Greg Humphrey, Jack A Gilbert, Rob KnightMSystems2019-06-25
Treatment of Multidrug-Resistant Vancomycin-Resistant Enterococcus faecium Hardware-Associated Vertebral Osteomyelitis with Oritavancin plus Ampicillin.Samira Dahesh, Brian Wong, Victor Nizet, George Sakoulas, Truc T Tran, Samuel L AitkenAntimicrobial Agents And Chemotherapy2019-06-24
EcoFABs: advancing microbiome science through standardized fabricated ecosystems.Karsten Zengler, Kirsten Hofmockel, Nitin S Baliga, Scott W Behie, Hans C Bernstein, James B Brown, José R Dinneny, Sheri A Floge, Samuel P Forry, Matthias Hess, Scott A Jackson, Christer Jansson, Stephen R Lindemann, Jennifer Pett-Ridge, Costas Maranas, Ophelia S Venturelli, Matthew D Wallenstein, Elizabeth A Shank, Trent R NorthenNature Methods2019-06-23
Insights into the evolving role of the gut microbiome in nonalcoholic fatty liver disease: rationale and prospects for therapeutic intervention.Marialena Mouzaki, Rohit LoombaTherapeutic Advances In Gastroenterology2019-06-23
Proliferative memory SAMHD1low CD4+ T cells harbour high levels of HIV-1 with compartmentalized viral populations.Lylia Hani, Antoine Chaillon, Marie-Laure Nere, Nicolas Ruffin, Joudy Alameddine, Maud Salmona, José-Luiz Lopez Zaragoza, Davey M Smith, Olivier Schwartz, Jean-Daniel Lelièvre, Constance Delaugerre, Yves Lévy, Nabila SeddikiPLoS Pathogens2019-06-20
Establishing microbial composition measurement standards with reference frames.James T Morton, Clarisse Marotz, Alex Washburne, Justin Silverman, Livia S Zaramela, Anna Edlund, Karsten Zengler, Rob KnightNature Communications2019-06-20
MRI Assessment of Treatment Response in HIV-associated NAFLD: A Randomized Trial of a Stearoyl-Coenzyme-A-Desaturase-1 Inhibitor (ARRIVE Trial).Veeral H Ajmera, Edward Cachay, Christian Ramers, Irine Vodkin, Shirin Bassirian, Seema Singh, Neeraj Mangla, Richele Bettencourt, Jeannette L Aldous, Daniel Park, Daniel Lee, Jennifer Blanchard, Adrija Mamidipalli, Andrew Boehringer, Saima Aslam, Olof Dahlqvist Leinhard, Lisa Richards, Claude Sirlin, Rohit LoombaHepatology (Baltimore, Md.)2019-06-18
An Atlas of Human Glycosylation Pathways Enables Display of the Human Glycome by Gene Engineered Cells.Yoshiki Narimatsu, Hiren J Joshi, Rebecca Nason, Julie Van Coillie, Richard Karlsson, Lingbo Sun, Zilu Ye, Yen-Hsi Chen, Katrine T Schjoldager, Catharina Steentoft, Sanae Furukawa, Barbara A Bensing, Paul M Sullam, Andrew J Thompson, James C Paulson, Christian Büll, Gosse J Adema, Ulla Mandel, Lars Hansen, Eric Paul Bennett, Ajit Varki, Sergey Y Vakhrushev, Zhang Yang, Henrik ClausenMolecular Cell2019-06-18
Higher-fitness yeast genotypes are less robust to deleterious mutations.Milo S Johnson, Alena Martsul, Sergey Kryazhimskiy, Michael M DesaiScience (New York, N.Y.)2019-06-18
Farm-like indoor microbiota in non-farm homes protects children from asthma development.Pirkka V Kirjavainen, Anne M Karvonen, Rachel I Adams, Martin Täubel, Marjut Roponen, Pauli Tuoresmäki, Georg Loss, Balamuralikrishna Jayaprakash, Martin Depner, Markus Johannes Ege, Harald Renz, Petra Ina Pfefferle, Bianca Schaub, Roger Lauener, Anne Hyvärinen, Rob Knight, Dick J J Heederik, Erika von Mutius, Juha PekkanenNature Medicine2019-06-17
Red Sea SAR11 and Single-Cell Genomes Reflect Globally Distributed Pangenomes.Luke R Thompson, Mohamed F Haroon, Ahmed A Shibl, Matt J Cahill, David K Ngugi, Gareth J Williams, James T Morton, Rob Knight, Kelly D Goodwin, Ulrich StinglApplied And Environmental Microbiology2019-06-17
Principles of rhythmicity emerging from cyanobacteria.Susan S GoldenThe European Journal Of Neuroscience2019-06-17
The impact of skin care products on skin chemistry and microbiome dynamics.Amina Bouslimani, Ricardo da Silva, Tomasz Kosciolek, Stefan Janssen, Chris Callewaert, Amnon Amir, Kathleen Dorrestein, Alexey V Melnik, Livia S Zaramela, Ji-Nu Kim, Gregory Humphrey, Tara Schwartz, Karenina Sanders, Caitriona Brennan, Tal Luzzatto-Knaan, Gail Ackermann, Daniel McDonald, Karsten Zengler, Rob Knight, Pieter C DorresteinBMC Biology2019-06-12
Multiantigenic Nanotoxoids for Antivirulence Vaccination against Antibiotic-Resistant Gram-Negative Bacteria.Xiaoli Wei, Danni Ran, Anaamika Campeau, Crystal Xiao, Jiarong Zhou, Diana Dehaini, Yao Jiang, Ashley V Kroll, Qiangzhe Zhang, Weiwei Gao, David J Gonzalez, Ronnie H Fang, Liangfang ZhangNano Letters2019-06-11
Ground beef microbiome changes with antimicrobial decontamination interventions and product storage.Margaret D Weinroth, Brianna C Britton, Kathryn R McCullough, Jennifer N Martin, Ifigenia Geornaras, Rob Knight, Keith E Belk, Jessica L MetcalfPloS One2019-06-05
Investigation of Premyrsinane and Myrsinane Esters in Euphorbia cupanii and Euphobia pithyusa with MS2LDA and Combinatorial Molecular Network Annotation Propagation.Mélissa Nothias-Esposito, Louis Felix Nothias, Ricardo R Da Silva, Pascal Retailleau, Zheng Zhang, Pieter Leyssen, Fanny Roussi, David Touboul, Julien Paolini, Pieter C Dorrestein, Marc LitaudonJournal Of Natural Products2019-06-05
Is there convergence of gut microbes in blood-feeding vertebrates?Se Jin Song, Jon G Sanders, Daniel T Baldassarre, Jaime A Chaves, Nicholas S Johnson, Antoinette J Piaggio, Matthew J Stuckey, Eva Nováková, Jessica L Metcalf, Bruno B Chomel, Alvaro Aguilar-Setién, Rob Knight, Valerie J McKenziePhilosophical Transactions Of The Royal Society Of London. Series B, Biological Sciences2019-06-03
BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs.Dmitry Meleshko, Hosein Mohimani, Vittorio Tracanna, Iman Hajirasouliha, Marnix H Medema, Anton Korobeynikov, Pavel A PevznerGenome Research2019-06-03
Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism.Chuankai Cheng, Edward J O'Brien, Douglas McCloskey, Jose Utrilla, Connor Olson, Ryan A LaCroix, Troy E Sandberg, Adam M Feist, Bernhard O Palsson, Zachary A KingPLoS Computational Biology2019-06-03
Concurrent measurement of microbiome and allergens in the air of bedrooms of allergy disease patients in the Chicago area.Miles Richardson, Neil Gottel, Jack A Gilbert, Julian Gordon, Prasanthi Gandhi, Rachel Reboulet, Jarrad T Hampton-MarcellMicrobiome2019-06-03
Detecting genetic interactions using parallel evolution in experimental populations.Kaitlin J Fisher, Sergey Kryazhimskiy, Gregory I LangPhilosophical Transactions Of The Royal Society Of London. Series B, Biological Sciences2019-06-03
Review article: emerging role of the gut microbiome in the progression of nonalcoholic fatty liver disease and potential therapeutic implications.Saumya Jayakumar, Rohit LoombaAlimentary Pharmacology & Therapeutics2019-05-31
TOX and TOX2 transcription factors cooperate with NR4A transcription factors to impose CD8 T cell exhaustion.Hyungseok Seo, Joyce Chen, Edahí González-Avalos, Daniela Samaniego-Castruita, Arundhoti Das, Yueqiang H Wang, Isaac F López-Moyado, Romain O Georges, Wade Zhang, Atsushi Onodera, Cheng-Jang Wu, Li-Fan Lu, Patrick G Hogan, Avinash Bhandoola, Anjana RaoProceedings Of The National Academy Of Sciences Of The United States Of America2019-05-31
CRTAM Shapes the Gut Microbiota and Enhances the Severity of Infection.Araceli Perez-Lopez, Sean-Paul Nuccio, Irina Ushach, Robert A Edwards, Rachna Pahu, Steven Silva, Albert Zlotnik, Manuela RaffatelluJournal Of Immunology (Baltimore, Md. : 1950)2019-05-29
Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases.Jason Lloyd-Price, Cesar Arze, Ashwin N Ananthakrishnan, Melanie Schirmer, Julian Avila-Pacheco, Tiffany W Poon, Elizabeth Andrews, Nadim J Ajami, Kevin S Bonham, Colin J Brislawn, David Casero, Holly Courtney, Antonio Gonzalez, Thomas G Graeber, A Brantley Hall, Kathleen Lake, Carol J Landers, Himel Mallick, Damian R Plichta, Mahadev Prasad, Gholamali Rahnavard, Jenny Sauk, Dmitry Shungin, Yoshiki Vázquez-Baeza, Richard A White, , Jonathan Braun, Lee A Denson, Janet K Jansson, Rob Knight, Subra Kugathasan, Dermot P B McGovern, Joseph F Petrosino, Thaddeus S Stappenbeck, Harland S Winter, Clary B Clish, Eric A Franzosa, Hera Vlamakis, Ramnik J Xavier, Curtis HuttenhowerNature2019-05-29
Nature's Combinatorial Biosynthesis Produces Vatiamides A-F.Nathan A Moss, Grant Seiler, Tiago F Leão, Gabriel Castro-Falcón, Lena Gerwick, Chambers C Hughes, William H GerwickAngewandte Chemie (International Ed. In English)2019-05-28
Community ecology as a framework for human microbiome research.Jack A Gilbert, Susan V LynchNature Medicine2019-05-27
Comparative Genome-Scale Metabolic Modeling of Metallo-Beta-Lactamase-Producing Multidrug-Resistant Clinical Isolates.Charles J Norsigian, Heba Attia, Richard Szubin, Aymen S Yassin, Bernhard Ø Palsson, Ramy K Aziz, Jonathan M MonkFrontiers In Cellular And Infection Microbiology2019-05-24
Comparison of Three Nucleic Acid Amplification Tests and Culture for Detection of Group B from Enrichment Broth.Ji H Shin, David T PrideJournal Of Clinical Microbiology2019-05-24
Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary.Clarisse Marotz, Anukriti Sharma, Greg Humphrey, Neil Gottel, Christopher Daum, Jack A Gilbert, Emiley Eloe-Fadrosh, Rob KnightBioTechniques2019-05-24
Bacterial Tetrabromopyrrole Debrominase Shares a Reductive Dehalogenation Strategy with Human Thyroid Deiodinase.Jonathan R Chekan, Ga Young Lee, Abrahim El Gamal, Trevor N Purdy, K N Houk, Bradley S MooreBiochemistry2019-05-22
Cognitive Trajectory Phenotypes in Human Immunodeficiency Virus-Infected Patients.Raha M Dastgheyb, Ned Sacktor, Donald Franklin, Scott Letendre, Thomas Marcotte, Robert Heaton, Igor Grant, Justin C McArthur, Leah H Rubin, Norman J HaugheyJournal Of Acquired Immune Deficiency Syndromes (1999)2019-05-21
Cefazolin and Ertapenem Salvage Therapy Rapidly Clears Persistent Methicillin-Susceptible Staphylococcus aureus Bacteremia.Erlinda R Ulloa, Kavindra V Singh, Matthew Geriak, Fadi Haddad, Barbara E Murray, Victor Nizet, George SakoulasClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2019-05-20
Gut microbiota in wild and captive Guizhou snub-nosed monkeys, Rhinopithecus brelichi.Vanessa L Hale, Chia L Tan, Kefeng Niu, Yeqin Yang, Qikun Zhang, Rob Knight, Katherine R AmatoAmerican Journal Of Primatology2019-05-20
Relationship between human leukocyte antigen alleles and risk of Kaposi's sarcoma in Cameroon.Elena M Cornejo Castro, Brian J Morrison, Vickie A Marshall, Nazzarena Labo, Wendell J Miley, Nathan Clements, George Nelson, Paul Ndom, Kristen Stolka, Jennifer J Hemingway-Foday, Mahamat Abassora, Xiaojiang Gao, Jennifer S Smith, Mary Carrington, Denise WhitbyGenes And Immunity2019-05-20
Primary transcriptome and translatome analysis determines transcriptional and translational regulatory elements encoded in the Streptomyces clavuligerus genome.Soonkyu Hwang, Namil Lee, Yujin Jeong, Yongjae Lee, Woori Kim, Suhyung Cho, Bernhard O Palsson, Byung-Kwan ChoNucleic Acids Research2019-05-17
Synthetic Biology Tools for Novel Secondary Metabolite Discovery in .Namil Lee, Soonkyu Hwang, Yongjae Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan ChoJournal Of Microbiology And Biotechnology2019-05-17
Integrated Analysis of Human Milk Microbiota With Oligosaccharides and Fatty Acids in the CHILD Cohort.Shirin Moossavi, Faisal Atakora, Kozeta Miliku, Shadi Sepehri, Bianca Robertson, Qing Ling Duan, Allan B Becker, Piushkumar J Mandhane, Stuart E Turvey, Theo J Moraes, Diana L Lefebvre, Malcolm R Sears, Padmaja Subbarao, Catherine J Field, Lars Bode, Ehsan Khafipour, Meghan B AzadFrontiers In Nutrition2019-05-16
Sex-specific effects of microbiome perturbations on cerebral Aβ amyloidosis and microglia phenotypes.Hemraj B Dodiya, Thomas Kuntz, Shabana M Shaik, Caroline Baufeld, Jeffrey Leibowitz, Xulun Zhang, Neil Gottel, Xiaoqiong Zhang, Oleg Butovsky, Jack A Gilbert, Sangram S SisodiaThe Journal Of Experimental Medicine2019-05-16
Malaria vector species in Amazonian Peru co-occur in larval habitats but have distinct larval microbial communities.Catharine Prussing, Marlon P Saavedra, Sara A Bickersmith, Freddy Alava, Mitchel Guzmán, Edgar Manrique, Gabriel Carrasco-Escobar, Marta Moreno, Dionicia Gamboa, Joseph M Vinetz, Jan E ConnPLoS Neglected Tropical Diseases2019-05-15
Comparative Genomics of Cyanobacterial Symbionts Reveals Distinct, Specialized Metabolism in Tropical Sponges.Michelle A Schorn, Peter A Jordan, Sheila Podell, Jessica M Blanton, Vinayak Agarwal, Jason S Biggs, Eric E Allen, Bradley S MooreMBio2019-05-14
Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults.Jacobo de la Cuesta-Zuluaga, Scott T Kelley, Yingfeng Chen, Juan S Escobar, Noel T Mueller, Ruth E Ley, Daniel McDonald, Shi Huang, Austin D Swafford, Rob Knight, Varykina G ThackrayMSystems2019-05-14
Lipocalin 2: A New Antimicrobial in Mast Cells.Yu-Ling Chang, Zhenping Wang, Satomi Igawa, Jae Eun Choi, Tyler Werbel, Anna Di NardoInternational Journal Of Molecular Sciences2019-05-14
A Simple Microbiome in the European Common Cuttlefish, .Holly L Lutz, S Tabita Ramírez-Puebla, Lisa Abbo, Amber Durand, Cathleen Schlundt, Neil R Gottel, Alexandra K Sjaarda, Roger T Hanlon, Jack A Gilbert, Jessica L Mark WelchMSystems2019-05-14
Major shifts in gut microbiota during development and its relationship to growth in ostriches.Elin Videvall, Se Jin Song, Hanna M Bensch, Maria Strandh, Anel Engelbrecht, Naomi Serfontein, Olof Hellgren, Adriaan Olivier, Schalk Cloete, Rob Knight, Charlie K CornwallisMolecular Ecology2019-05-11
Slow Delivery Immunization Enhances HIV Neutralizing Antibody and Germinal Center Responses via Modulation of Immunodominance.Kimberly M Cirelli, Diane G Carnathan, Bartek Nogal, Jacob T Martin, Oscar L Rodriguez, Amit A Upadhyay, Chiamaka A Enemuo, Etse H Gebru, Yury Choe, Federico Viviano, Catherine Nakao, Matthias G Pauthner, Samantha Reiss, Christopher A Cottrell, Melissa L Smith, Raiza Bastidas, William Gibson, Amber N Wolabaugh, Mariane B Melo, Benjamin Cossette, Venkatesh Kumar, Nirav B Patel, Talar Tokatlian, Sergey Menis, Daniel W Kulp, Dennis R Burton, Ben Murrell, William R Schief, Steven E Bosinger, Andrew B Ward, Corey T Watson, Guido Silvestri, Darrell J Irvine, Shane CrottyCell2019-05-09
A White-Box Machine Learning Approach for Revealing Antibiotic Mechanisms of Action.Jason H Yang, Sarah N Wright, Meagan Hamblin, Douglas McCloskey, Miguel A Alcantar, Lars Schrübbers, Allison J Lopatkin, Sangeeta Satish, Amir Nili, Bernhard O Palsson, Graham C Walker, James J CollinsCell2019-05-09
Increased LIGHT expression and activation of non-canonical NF-κB are observed in gastric lesions of MyD88-deficient mice upon Helicobacter felis infection.Raquel Mejías-Luque, Ivonne Lozano-Pope, Andreas Wanisch, Matthias Heikenwälder, Markus Gerhard, Marygorret ObonyoScientific Reports2019-05-07
Transcriptional responses to DNA damage.Erica Silva, Trey IdekerDNA Repair2019-05-07
A programmable fate decision landscape underlies single-cell aging in yeast.Yang Li, Yanfei Jiang, Julie Paxman, Richard O'Laughlin, Stephen Klepin, Yuelian Zhu, Lorraine Pillus, Lev S Tsimring, Jeff Hasty, Nan HaoScience (New York, N.Y.)2019-05-07
Nontypeable Has Evolved Preferential Use of Acetylneuraminic Acid as a Host Adaptation.Preston S K Ng, Christopher J Day, John M Atack, Lauren E Hartley-Tassell, Linda E Winter, Tal Marshanski, Vered Padler-Karavani, Ajit Varki, Stephen J Barenkamp, Michael A Apicella, Michael P JenningsMBio2019-05-07
Pharmacomicrobiomics: The Holy Grail to Variability in Drug Response?Anukriti Sharma, Mary M Buschmann, Jack A GilbertClinical Pharmacology And Therapeutics2019-05-07
Augmentation of Urinary Lactoferrin Enhances Host Innate Immune Clearance of Uropathogenic Escherichia coli.Kathryn A Patras, Albert D Ha, Emma Rooholfada, Joshua Olson, Satish P Ramachandra Rao, Ann E Lin, Victor NizetJournal Of Innate Immunity2019-05-03
Exploring the piezotolerant/piezophilic microbial community and genomic basis of piezotolerance within the deep subsurface Deccan traps.Avishek Dutta, Logan M Peoples, Abhishek Gupta, Douglas H Bartlett, Pinaki SarExtremophiles : Life Under Extreme Conditions2019-05-02
Longitudinal homogenization of the microbiome between both occupants and the built environment in a cohort of United States Air Force Cadets.Anukriti Sharma, Miles Richardson, Lauren Cralle, Christopher E Stamper, Juan P Maestre, Kelly A Stearns-Yoder, Teodor T Postolache, Katherine L Bates, Kerry A Kinney, Lisa A Brenner, Christopher A Lowry, Jack A Gilbert, Andrew J HoisingtonMicrobiome2019-05-02
An Experimental Group A Vaccine That Reduces Pharyngitis and Tonsillitis in a Nonhuman Primate Model.Tania Rivera-Hernandez, Diane G Carnathan, Scott Jones, Amanda J Cork, Mark R Davies, Peter M Moyle, Istvan Toth, Michael R Batzloff, James McCarthy, Victor Nizet, David Goldblatt, Guido Silvestri, Mark J WalkerMBio2019-04-30
Absence of Neu5Gc and Presence of Anti-Neu5Gc Antibodies in Humans-An Evolutionary Perspective.Meghan O Altman, Pascal GagneuxFrontiers In Immunology2019-04-30
Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems.Anupriya Tripathi, Zhenjiang Zech Xu, Jin Xue, Orit Poulsen, Antonio Gonzalez, Gregory Humphrey, Michael J Meehan, Alexey V Melnik, Gail Ackermann, Dan Zhou, Atul Malhotra, Gabriel G Haddad, Pieter C Dorrestein, Rob KnightMSystems2019-04-30
Topological and functional comparison of community detection algorithms in biological networks.Sara Rahiminejad, Mano R Maurya, Shankar SubramaniamBMC Bioinformatics2019-04-27
Characterization of CA-MRSA TCH1516 exposed to nafcillin in bacteriological and physiological media.Saugat Poudel, Hannah Tsunemoto, Michael Meehan, Richard Szubin, Connor A Olson, Anne Lamsa, Yara Seif, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M Monk, Pieter C Dorrestein, Joseph Pogliano, Rob Knight, Victor Nizet, Bernhard O Palsson, Adam M FeistScientific Data2019-04-26
Clinical Data on Daptomycin plus Ceftaroline versus Standard of Care Monotherapy in the Treatment of Methicillin-Resistant Staphylococcus aureus Bacteremia.Matthew Geriak, Fadi Haddad, Khulood Rizvi, Warren Rose, Ravina Kullar, Kerry LaPlante, Marie Yu, Logan Vasina, Krista Ouellette, Marcus Zervos, Victor Nizet, George SakoulasAntimicrobial Agents And Chemotherapy2019-04-25
Metabolic basis of brain-like electrical signalling in bacterial communities.Rosa Martinez-Corral, Jintao Liu, Arthur Prindle, Gürol M Süel, Jordi Garcia-OjalvoPhilosophical Transactions Of The Royal Society Of London. Series B, Biological Sciences2019-04-23
Natural variation in the roles of C. elegans autophagy components during microsporidia infection.Keir M Balla, Vladimir Lažetić, Emily R TroemelPloS One2019-04-23
The extracellular matrix protects Bacillus subtilis colonies from Pseudomonas invasion and modulates plant co-colonization.Carlos Molina-Santiago, John R Pearson, Yurena Navarro, María Victoria Berlanga-Clavero, Andrés Mauricio Caraballo-Rodriguez, Daniel Petras, María Luisa García-Martín, Gaelle Lamon, Birgit Haberstein, Francisco M Cazorla, Antonio de Vicente, Antoine Loquet, Pieter C Dorrestein, Diego RomeroNature Communications2019-04-23
Household composition and the infant fecal microbiome: The INSPIRE study.Avery A Lane, Michelle K McGuire, Mark A McGuire, Janet E Williams, Kimberly A Lackey, Edward H Hagen, Abhishek Kaul, Debela Gindola, Dubale Gebeyehu, Katherine E Flores, James A Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, Linda J Kvist, Gloria E Otoo, Juan M Rodríguez, Lorena Ruiz, Rossina G Pareja, Lars Bode, William J Price, Courtney L MeehanAmerican Journal Of Physical Anthropology2019-04-22
BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data.Jean-Christophe Lachance, Colton J Lloyd, Jonathan M Monk, Laurence Yang, Anand V Sastry, Yara Seif, Bernhard O Palsson, Sébastien Rodrigue, Adam M Feist, Zachary A King, Pierre-Étienne JacquesPLoS Computational Biology2019-04-22
Microbiota-Produced -Formyl Peptide fMLF Promotes Obesity-Induced Glucose Intolerance.Joshua Wollam, Matthew Riopel, Yong-Jiang Xu, Andrew M F Johnson, Jachelle M Ofrecio, Wei Ying, Dalila El Ouarrat, Luisa S Chan, Andrew W Han, Nadir A Mahmood, Caitlin N Ryan, Yun Sok Lee, Jeramie D Watrous, Mahendra D Chordia, Dongfeng Pan, Mohit Jain, Jerrold M OlefskyDiabetes2019-04-22
Should We Divide Crohn's Disease Into Ileum-Dominant and Isolated Colonic Diseases?Parambir S Dulai, Siddharth Singh, Niels Vande Casteele, Brigid S Boland, Jesus Rivera-Nieves, Peter B Ernst, Lars Eckmann, Kim E Barrett, John T Chang, William J SandbornClinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association2019-04-19
Interleukin (IL)-1β and IL-10 Host Responses in Patients With Staphylococcus aureus Bacteremia Determined by Antimicrobial Therapy.Cecilia F Volk, Sarah Burgdorf, Graham Edwardson, Victor Nizet, George Sakoulas, Warren E RoseClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2019-04-18
What's Normal? Microbiomes in Human Milk and Infant Feces Are Related to Each Other but Vary Geographically: The INSPIRE Study.Kimberly A Lackey, Janet E Williams, Courtney L Meehan, Jessica A Zachek, Elizabeth D Benda, William J Price, James A Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, Debela Gindola K, Linda J Kvist, Gloria E Otoo, Cristina García-Carral, Esther Jiménez, Lorena Ruiz, Juan M Rodríguez, Rossina G Pareja, Lars Bode, Mark A McGuire, Michelle K McGuireFrontiers In Nutrition2019-04-17
Rapid Germinal Center and Antibody Responses in Non-human Primates after a Single Nanoparticle Vaccine Immunization.Colin Havenar-Daughton, Diane G Carnathan, Archana V Boopathy, Amit A Upadhyay, Ben Murrell, Samantha M Reiss, Chiamaka A Enemuo, Etse H Gebru, Yury Choe, Pallavi Dhadvai, Federico Viviano, Kirti Kaushik, Jinal N Bhiman, Bryan Briney, Dennis R Burton, Steven E Bosinger, William R Schief, Darrell J Irvine, Guido Silvestri, Shane CrottyCell Reports2019-04-16
Welcome and Opening Remarks.Lars Bode, William D RhineBreastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine2019-04-16
BLANKA: an Algorithm for Blank Subtraction in Mass Spectrometry of Complex Biological Samples.Jessica L Cleary, Gordon T Luu, Emily C Pierce, Rachel J Dutton, Laura M SanchezJournal Of The American Society For Mass Spectrometry2019-04-16
Microbial and metabolic succession on common building materials under high humidity conditions.Simon Lax, Cesar Cardona, Dan Zhao, Valerie J Winton, Gabriel Goodney, Peng Gao, Neil Gottel, Erica M Hartmann, Chris Henry, Paul M Thomas, Scott T Kelley, Brent Stephens, Jack A GilbertNature Communications2019-04-16
Cystic Fibrosis Rapid Response: Translating Multi-omics Data into Clinically Relevant Information.Ana Georgina Cobián Güemes, Yan Wei Lim, Robert A Quinn, Douglas J Conrad, Sean Benler, Heather Maughan, Rob Edwards, Thomas Brettin, Vito Adrian Cantú, Daniel Cuevas, Rohaum Hamidi, Pieter Dorrestein, Forest RohwerMBio2019-04-16
Identification of the Bacterial Biosynthetic Gene Clusters of the Oral Microbiome Illuminates the Unexplored Social Language of Bacteria during Health and Disease.Gajender Aleti, Jonathon L Baker, Xiaoyu Tang, Ruth Alvarez, Márcia Dinis, Nini C Tran, Alexey V Melnik, Cuncong Zhong, Madeleine Ernst, Pieter C Dorrestein, Anna EdlundMBio2019-04-16
Intestinal and hepatic microbiota changes associated with chronic ethanol administration in mice.Sena Bluemel, Lirui Wang, Claire Kuelbs, Kelvin Moncera, Manolito Torralba, Harinder Singh, Derrick E Fouts, Bernd SchnablGut Microbes2019-04-14
Diel population and functional synchrony of microbial communities on coral reefs.Linda Wegley Kelly, Craig E Nelson, Andreas F Haas, Douglas S Naliboff, Sandi Calhoun, Craig A Carlson, Robert A Edwards, Michael D Fox, Mark Hatay, Maggie D Johnson, Emily L A Kelly, Yan Wei Lim, Saichetana Macherla, Zachary A Quinlan, Genivaldo Gueiros Z Silva, Mark J A Vermeij, Brian Zgliczynski, Stuart A Sandin, Jennifer E Smith, Forest RohwerNature Communications2019-04-12
The Intestinal Microbiome, Plasma Metabolome, and Liver Transcriptome: A Conspiracy Driving Hepatic Steatosis.Wajahat Z Mehal, Rohit LoombaHepatology (Baltimore, Md.)2019-04-11
The urgent need for microbiology literacy in society.Kenneth Timmis, Ricardo Cavicchioli, José Luis Garcia, Balbina Nogales, Max Chavarría, Lisa Stein, Terry J McGenity, Nicole Webster, Brajesh K Singh, Jo Handelsman, Victor de Lorenzo, Carla Pruzzo, James Timmis, Juan Luis Ramos Martín, Willy Verstraete, Mike Jetten, Antoine Danchin, Wei Huang, Jack Gilbert, Rup Lal, Helena Santos, Sang Yup Lee, Angela Sessitsch, Paola Bonfante, Lone Gram, Raymond T P Lin, Eliora Ron, Z Ceren Karahan, Jan Roelof van der Meer, Seza Artunkal, Dieter Jahn, Lucy HarperEnvironmental Microbiology2019-04-11
Mechanism of Action of Methotrexate Against Zika Virus.Sungjun Beck, Zhe Zhu, Michelli F Oliveira, Davey M Smith, Jeremy N Rich, Jean A Bernatchez, Jair L Siqueira-NetoViruses2019-04-10
Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces.Aleksandra Checinska Sielaff, Camilla Urbaniak, Ganesh Babu Malli Mohan, Victor G Stepanov, Quyen Tran, Jason M Wood, Jeremiah Minich, Daniel McDonald, Teresa Mayer, Rob Knight, Fathi Karouia, George E Fox, Kasthuri VenkateswaranMicrobiome2019-04-08
Enzyme promiscuity shapes adaptation to novel growth substrates.Gabriela I Guzmán, Troy E Sandberg, Ryan A LaCroix, Ákos Nyerges, Henrietta Papp, Markus de Raad, Zachary A King, Ying Hefner, Trent R Northen, Richard A Notebaart, Csaba Pál, Bernhard O Palsson, Balázs Papp, Adam M FeistMolecular Systems Biology2019-04-08
The Extracellular RNA Communication Consortium: Establishing Foundational Knowledge and Technologies for Extracellular RNA Research.Saumya Das, , K Mark Ansel, Markus Bitzer, Xandra O Breakefield, Alain Charest, David J Galas, Mark B Gerstein, Mihir Gupta, Aleksandar Milosavljevic, Michael T McManus, Tushar Patel, Robert L Raffai, Joel Rozowsky, Matthew E Roth, Julie A Saugstad, Kendall Van Keuren-Jensen, Alissa M Weaver, Louise C LaurentCell2019-04-06
Inhibition of Human Neutrophil Extracellular Trap (NET) Production by Propofol and Lipid Emulsion.Angela Meier, Jason Chien, Laura Hobohm, Kathryn Ann Patras, Victor Nizet, Ross CorridenFrontiers In Pharmacology2019-04-05
A Multiscale Map of the Stem Cell State in Pancreatic Adenocarcinoma.Nikki K Lytle, L Paige Ferguson, Nirakar Rajbhandari, Kathryn Gilroy, Raymond G Fox, Anagha Deshpande, Christian M Schürch, Michael Hamilton, Neil Robertson, Wei Lin, Pawan Noel, Martin Wartenberg, Inti Zlobec, Micha Eichmann, José A Galván, Eva Karamitopoulou, Tami Gilderman, Lourdes Adriana Esparza, Yutaka Shima, Philipp Spahn, Randall French, Nathan E Lewis, Kathleen M Fisch, Roman Sasik, Sara Brin Rosenthal, Marcie Kritzik, Daniel Von Hoff, Haiyong Han, Trey Ideker, Aniruddha J Deshpande, Andrew M Lowy, Peter D Adams, Tannishtha ReyaCell2019-04-04
Detection of Natural Products and Their Producers in Ocean Sediments.Robert N Tuttle, Alyssa M Demko, Nastassia V Patin, Clifford A Kapono, Mohamed S Donia, Pieter Dorrestein, Paul R JensenApplied And Environmental Microbiology2019-04-04
Primary Incidence of Hepatitis C Virus Infection Among HIV-Infected Men Who Have Sex With Men in San Diego, 2000-2015.Antoine Chaillon, Xiaoying Sun, Edward R Cachay, David Looney, David Wyles, Richard S Garfein, Thomas C S Martin, Sonia Jain, Sanjay R Mehta, Davey M Smith, Susan J Little, Natasha K MartinOpen Forum Infectious Diseases2019-04-03
Human Influenza A Virus Hemagglutinin Glycan Evolution Follows a Temporal Pattern to a Glycan Limit.Meghan O Altman, Matthew Angel, Ivan Košík, Nídia S Trovão, Seth J Zost, James S Gibbs, Lorenzo Casalino, Rommie E Amaro, Scott E Hensley, Martha I Nelson, Jonathan W YewdellMBio2019-04-02
A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease.Cyrielle Caussy, Anupriya Tripathi, Greg Humphrey, Shirin Bassirian, Seema Singh, Claire Faulkner, Ricki Bettencourt, Emily Rizo, Lisa Richards, Zhenjiang Z Xu, Michael R Downes, Ronald M Evans, David A Brenner, Claude B Sirlin, Rob Knight, Rohit LoombaNature Communications2019-03-29
A microcin processing peptidase-like protein of the cyanobacterium Synechococcus elongatus is essential for secretion of biofilm-promoting proteins.Rami Parnasa, Eleonora Sendersky, Ryan Simkovsky, Hiba Waldman Ben-Asher, Susan S Golden, Rakefet SchwarzEnvironmental Microbiology Reports2019-03-29
The long noncoding RNA regulates inflammatory gene expression.Qiong Zhang, Ti-Chun Chao, Veena S Patil, Yue Qin, Shashi Kant Tiwari, Joshua Chiou, Alexander Dobin, Chih-Ming Tsai, Zhonghan Li, Jason Dang, Shagun Gupta, Kevin Urdahl, Victor Nizet, Thomas R Gingeras, Kyle J Gaulton, Tariq M RanaThe EMBO Journal2019-03-27
Diversity and composition of intertidal gastropod microbiomes across a major marine biogeographic boundary.Alexander T Neu, Eric E Allen, Kaustuv RoyEnvironmental Microbiology Reports2019-03-27
Mast cell recruitment is modulated by the hairless skin microbiome.Chia-Chi Wu, Ji-Nu Kim, Zhenping Wang, Yu-Ling Chang, Karsten Zengler, Anna Di NardoThe Journal Of Allergy And Clinical Immunology2019-03-27
A non-randomized trial to assess the safety, tolerability, and pharmacokinetics of posaconazole oral suspension in immunocompromised children with neutropenia.Antonio C Arrieta, Lillian Sung, John S Bradley, C Michel Zwaan, Davis Gates, Hetty Waskin, Patricia Carmelitano, Andreas H Groll, Thomas Lehrnbecher, Eric Mangin, Amita Joshi, Nicholas A Kartsonis, Thomas J Walsh, Amanda PaschkePloS One2019-03-26
Dual actions of group B capsular sialic acid provide resistance to platelet-mediated antimicrobial killing.Satoshi Uchiyama, Josh Sun, Kyoko Fukahori, Nao Ando, Mengyou Wu, Flavio Schwarz, Shoib S Siddiqui, Ajit Varki, Jamey D Marth, Victor NizetProceedings Of The National Academy Of Sciences Of The United States Of America2019-03-25
Direct cloning and heterologous expression of natural product biosynthetic gene clusters by transformation-associated recombination.Jia Jia Zhang, Kazuya Yamanaka, Xiaoyu Tang, Bradley S MooreMethods In Enzymology2019-03-21
Infection.Sheila E CroweThe New England Journal Of Medicine2019-03-21
Association of dietary patterns with the gut microbiota in older, community-dwelling men.James M Shikany, Ryan T Demmer, Abigail J Johnson, Nora F Fino, Katie Meyer, Kristine E Ensrud, Nancy E Lane, Eric S Orwoll, Deborah M Kado, Joseph M Zmuda, Lisa Langsetmo, The American Journal Of Clinical Nutrition2019-03-20
A Threshold Model for T-Cell Activation in the Era of Checkpoint Blockade Immunotherapy.Kripa Guram, Sangwoo S Kim, Victoria Wu, P Dominick Sanders, Sandip Patel, Stephen P Schoenberger, Ezra E W Cohen, Si-Yi Chen, Andrew B SharabiFrontiers In Immunology2019-03-18
Synthesis, bioactivity, and enzymatic modification of antibacterial thiotetromycin derivatives.Marlene L Rothe, Jie Li, Ernesto Garibay, Bradley S Moore, Shaun M K McKinnieOrganic & Biomolecular Chemistry2019-03-15
Effects of comorbidity burden and age on brain integrity in HIV.Rowan Saloner, Robert K Heaton, Laura M Campbell, Anna Chen, Donald Franklin, Ronald J Ellis, Ann C Collier, Christina Marra, David B Clifford, Benjamin Gelman, Ned Sacktor, Susan Morgello, J Allen McCutchan, Scott Letendre, Igor Grant, Christine Fennema-Notestine, AIDS (London, England)2019-03-15
An Efficient Combination Immunotherapy for Primary Liver Cancer by Harmonized Activation of Innate and Adaptive Immunity in Mice.Liang Wen, Bing Xin, Panyisha Wu, Chia-Hao Lin, Chuanhui Peng, Gaowei Wang, Jin Lee, Li-Fan Lu, Gen-Sheng FengHepatology (Baltimore, Md.)2019-03-13
Letrozole treatment of adult female mice results in a similar reproductive phenotype but distinct changes in metabolism and the gut microbiome compared to pubertal mice.Pedro J Torres, Danalea V Skarra, Bryan S Ho, Lillian Sau, Arya R Anvar, Scott T Kelley, Varykina G ThackrayBMC Microbiology2019-03-12
Minimal cells, maximal knowledge.Jean-Christophe Lachance, Sébastien Rodrigue, Bernhard O PalssonELife2019-03-12
CCL28 Is Involved in Mucosal IgA Responses, Olfaction, and Resistance to Enteric Infections.Amanda M Burkhardt, Araceli Perez-Lopez, Irina Ushach, Jovani Catalan-Dibene, Sean-Paul Nuccio, Lawton K Chung, Marcela Hernandez-Ruiz, Christina Carnevale, Manuela Raffatellu, Albert ZlotnikJournal Of Interferon & Cytokine Research : The Official Journal Of The International Society For Interferon And Cytokine Research2019-03-11
Coupling S-adenosylmethionine-dependent methylation to growth: Design and uses.Hao Luo, Anne Sofie L Hansen, Lei Yang, Konstantin Schneider, Mette Kristensen, Ulla Christensen, Hanne B Christensen, Bin Du, Emre Özdemir, Adam M Feist, Jay D Keasling, Michael K Jensen, Markus J Herrgård, Bernhard O PalssonPLoS Biology2019-03-11
Magnesium Flux Modulates Ribosomes to Increase Bacterial Survival.Dong-Yeon D Lee, Leticia Galera-Laporta, Maja Bialecka-Fornal, Eun Chae Moon, Zhouxin Shen, Steven P Briggs, Jordi Garcia-Ojalvo, Gürol M SüelCell2019-03-07
Refactoring the Cryptic Streptophenazine Biosynthetic Gene Cluster Unites Phenazine, Polyketide, and Nonribosomal Peptide Biochemistry.Katherine D Bauman, Jie Li, Kazuya Murata, Simone M Mantovani, Samira Dahesh, Victor Nizet, Hanna Luhavaya, Bradley S MooreCell Chemical Biology2019-03-07
Predicting proteome allocation, overflow metabolism, and metal requirements in a model acetogen.Joanne K Liu, Colton Lloyd, Mahmoud M Al-Bassam, Ali Ebrahim, Ji-Nu Kim, Connor Olson, Alexander Aksenov, Pieter Dorrestein, Karsten ZenglerPLoS Computational Biology2019-03-07
Divergent Aging of Isogenic Yeast Cells Revealed through Single-Cell Phenotypic Dynamics.Meng Jin, Yang Li, Richard O'Laughlin, Philip Bittihn, Lorraine Pillus, Lev S Tsimring, Jeff Hasty, Nan HaoCell Systems2019-03-06
Homophilic protein interactions facilitate bacterial aggregation and IgG-dependent complex formation by the Streptococcus canis M protein SCM.Andreas Nerlich, Antje-Maria Lapschies, Thomas P Kohler, Ingrid Cornax, Inga Eichhorn, Oliver Goldmann, Petra Krienke, Simone Bergmann, Victor Nizet, Sven Hammerschmidt, Manfred Rohde, Marcus FuldeVirulence2019-03-05
Intestinal Microbiota Mediates the Susceptibility to Polymicrobial Sepsis-Induced Liver Injury by Granisetron Generation in Mice.Shenhai Gong, Zhengzheng Yan, Zhanguo Liu, Mengwei Niu, Heng Fang, Na Li, Chenyang Huang, Lei Li, Guiming Chen, Haihua Luo, Xiaojiao Chen, Hongwei Zhou, Jingjuan Hu, Wei Yang, Qiaobing Huang, Bernd Schnabl, Ping Chang, Timothy R Billiar, Yong Jiang, Peng ChenHepatology (Baltimore, Md.)2019-03-05
Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites.Xuanji Li, Asker Daniel Brejnrod, Madeleine Ernst, Martin Rykær, Jakob Herschend, Nanna Mee Coops Olsen, Pieter C Dorrestein, Christopher Rensing, Søren Johannes SørensenEnvironment International2019-03-04
The genetic basis for adaptation of model-designed syntrophic co-cultures.Colton J Lloyd, Zachary A King, Troy E Sandberg, Ying Hefner, Connor A Olson, Patrick V Phaneuf, Edward J O'Brien, Jon G Sanders, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory Humphrey, Rob Knight, Adam M FeistPLoS Computational Biology2019-03-01
Enokitake Mushroom-like Standing Gold Nanowires toward Wearable Noninvasive Bimodal Glucose and Strain Sensing.Qingfeng Zhai, Shu Gong, Yan Wang, Quanxia Lyu, Yiyi Liu, Yunzhi Ling, Joseph Wang, George P Simon, Wenlong ChengACS Applied Materials & Interfaces2019-02-28
Viscosin-like lipopeptides from frog skin bacteria inhibit Aspergillus fumigatus and Batrachochytrium dendrobatidis detected by imaging mass spectrometry and molecular networking.Christian Martin H, Roberto Ibáñez, Louis-Félix Nothias, Cristopher A Boya P, Laura K Reinert, Louise A Rollins-Smith, Pieter C Dorrestein, Marcelino GutiérrezScientific Reports2019-02-28
Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month.Nina Iszatt, Stefan Janssen, Virissa Lenters, Cecilie Dahl, Hein Stigum, Rob Knight, Siddhartha Mandal, Shyamal Peddada, Antonio González, Tore Midtvedt, Merete EggesbøMicrobiome2019-02-27
Suppression of the gut microbiome ameliorates age-related arterial dysfunction and oxidative stress in mice.Vienna E Brunt, Rachel A Gioscia-Ryan, James J Richey, Melanie C Zigler, Lauren M Cuevas, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Micah L Battson, Andrew T Smithson, Andrew D Gilley, Gail Ackermann, Andrew P Neilson, Tiffany Weir, Kevin P Davy, Rob Knight, Douglas R SealsThe Journal Of Physiology2019-02-27
Salinipeptins: Integrated Genomic and Chemical Approaches Reveal Unusual d-Amino Acid-Containing Ribosomally Synthesized and Post-Translationally Modified Peptides (RiPPs) from a Great Salt Lake Streptomyces sp.Zhuo Shang, Jaclyn M Winter, Christopher A Kauffman, Inho Yang, William FenicalACS Chemical Biology2019-02-26
Adaptive laboratory evolution of a genome-reduced Escherichia coli.Donghui Choe, Jun Hyoung Lee, Minseob Yoo, Soonkyu Hwang, Bong Hyun Sung, Suhyung Cho, Bernhard Palsson, Sun Chang Kim, Byung-Kwan ChoNature Communications2019-02-25
Wearable biosensors for healthcare monitoring.Jayoung Kim, Alan S Campbell, Berta Esteban-Fernández de Ávila, Joseph WangNature Biotechnology2019-02-25
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0.Laurent Heirendt, Sylvain Arreckx, Thomas Pfau, Sebastián N Mendoza, Anne Richelle, Almut Heinken, Hulda S Haraldsdóttir, Jacek Wachowiak, Sarah M Keating, Vanja Vlasov, Stefania Magnusdóttir, Chiam Yu Ng, German Preciat, Alise Žagare, Siu H J Chan, Maike K Aurich, Catherine M Clancy, Jennifer Modamio, John T Sauls, Alberto Noronha, Aarash Bordbar, Benjamin Cousins, Diana C El Assal, Luis V Valcarcel, Iñigo Apaolaza, Susan Ghaderi, Masoud Ahookhosh, Marouen Ben Guebila, Andrejs Kostromins, Nicolas Sompairac, Hoai M Le, Ding Ma, Yuekai Sun, Lin Wang, James T Yurkovich, Miguel A P Oliveira, Phan T Vuong, Lemmer P El Assal, Inna Kuperstein, Andrei Zinovyev, H Scott Hinton, William A Bryant, Francisco J Aragón Artacho, Francisco J Planes, Egils Stalidzans, Alejandro Maass, Santosh Vempala, Michael Hucka, Michael A Saunders, Costas D Maranas, Nathan E Lewis, Thomas Sauter, Bernhard Ø Palsson, Ines Thiele, Ronan M T FlemingNature Protocols2019-02-23
Human Keratinocytes Use Sphingosine 1-Phosphate and its Receptors to Communicate Staphylococcus aureus Invasion and Activate Host Defense.Satomi Igawa, Jae Eun Choi, Zhenping Wang, Yu-Ling Chang, Chia-Chi Wu, Tyler Werbel, Akemi Ishida-Yamamoto, Anna Di NardoThe Journal Of Investigative Dermatology2019-02-23
Diversity and distribution of the bmp gene cluster and its Polybrominated products in the genus Pseudoalteromonas.Julia Busch, Vinayak Agarwal, Michelle Schorn, Henrique Machado, Bradley S Moore, Greg W Rouse, Lone Gram, Paul R JensenEnvironmental Microbiology2019-02-22
Mass Spectrometry Uncovers the Role of Surfactin as an Interspecies Recruitment Factor.Tal Luzzatto-Knaan, Alexey V Melnik, Pieter C DorresteinACS Chemical Biology2019-02-22
Docking simulation and antibiotic discovery targeting the MlaC protein in Gram-negative bacteria.Yu-Ming M Huang, Jason Munguia, Yinglong Miao, Victor Nizet, J Andrew McCammonChemical Biology & Drug Design2019-02-19
Engineering the microbiome for animal health and conservation.Se Jin Song, Douglas C Woodhams, Cameron Martino, Celeste Allaband, Andre Mu, Sandrine Javorschi-Miller-Montgomery, Jan S Suchodolski, Rob KnightExperimental Biology And Medicine (Maywood, N.J.)2019-02-18
Role of the intestinal microbiome in liver fibrosis development and new treatment strategies.Rongrong Zhou, Xuegong Fan, Bernd SchnablTranslational Research : The Journal Of Laboratory And Clinical Medicine2019-02-16
Gut microbiota in liver disease: too much is harmful, nothing at all is not helpful either.Phillipp Hartmann, Huikuan Chu, Yi Duan, Bernd SchnablAmerican Journal Of Physiology. Gastrointestinal And Liver Physiology2019-02-15
Modular epistasis and the compensatory evolution of gene deletion mutants.José I Rojas Echenique, Sergey Kryazhimskiy, Alex N Nguyen Ba, Michael M DesaiPLoS Genetics2019-02-15
Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome.Robert A Quinn, Sandeep Adem, Robert H Mills, William Comstock, Lindsay DeRight Goldasich, Gregory Humphrey, Alexander A Aksenov, Alexei V Melnik, Ricardo da Silva, Gail Ackermann, Nuno Bandeira, David J Gonzalez, Doug Conrad, Anthony J O'Donoghue, Rob Knight, Pieter C DorresteinMicrobiome2019-02-13
Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease.Robert H Mills, Yoshiki Vázquez-Baeza, Qiyun Zhu, Lingjing Jiang, James Gaffney, Greg Humphrey, Larry Smarr, Rob Knight, David J GonzalezMSystems2019-02-12
A Novel Sparse Compositional Technique Reveals Microbial Perturbations.Cameron Martino, James T Morton, Clarisse A Marotz, Luke R Thompson, Anupriya Tripathi, Rob Knight, Karsten ZenglerMSystems2019-02-12
Reply to Moossavi and Azad, "Quantifying and Interpreting the Association between Early-Life Gut Microbiota Composition and Childhood Obesity".Maggie A Stanislawski, Dana Dabelea, Brandie D Wagner, Nina Iszatt, Cecilie Dahl, Marci K Sontag, Rob Knight, Catherine A Lozupone, Merete EggesbøMBio2019-02-12
Short-Chain Fatty Acids from Activate Both a Canonical and Epigenetic Inflammatory Response in Human Sebocytes.James A Sanford, Alan M O'Neill, Christos C Zouboulis, Richard L GalloJournal Of Immunology (Baltimore, Md. : 1950)2019-02-08
Uraemic syndrome of chronic kidney disease: altered remote sensing and signalling.Sanjay K Nigam, Kevin T BushNature Reviews. Nephrology2019-02-08
Interrogation of Milk-Driven Changes to the Proteome of Intestinal Epithelial Cells by Integrated Proteomics and Glycomics.Sinead T Morrin, Rebecca A Owens, Marie Le Berre, Jared Q Gerlach, Lokesh Joshi, Lars Bode, Jane A Irwin, Rita M HickeyJournal Of Agricultural And Food Chemistry2019-02-06
Anaerobic degradation of hexadecane and phenanthrene coupled to sulfate reduction by enriched consortia from northern Gulf of Mexico seafloor sediment.Boryoung Shin, Minjae Kim, Karsten Zengler, Kuk-Jeong Chin, Will A Overholt, Lisa M Gieg, Konstantinos T Konstantinidis, Joel E KostkaScientific Reports2019-02-04
Community-acquired pneumonia in children: cell-free plasma sequencing for diagnosis and management.Lauge Farnaes, Julianne Wilke, Kathleen Ryan Loker, John S Bradley, Christopher R Cannavino, David K Hong, Alice Pong, Jennifer Foley, Nicole G CoufalDiagnostic Microbiology And Infectious Disease2019-02-02
Saccharoquinoline, a Cytotoxic Alkaloidal Meroterpenoid from Marine-Derived Bacterium sp.Tu Cam Le, Eun Ju Lee, Jihye Lee, Ahreum Hong, Chae-Yoon Yim, Inho Yang, Hyukjae Choi, Jungwook Chin, Sung Jin Cho, Jaeyoung Ko, Hayoung Hwang, Sang-Jip Nam, William FenicalMarine Drugs2019-02-02
Cerebrospinal fluid viral escape in aviremic HIV-infected patients receiving antiretroviral therapy: prevalence, risk factors and neurocognitive effects.Ignacio Pérez-Valero, Ronald Ellis, Robert Heaton, Reena Deutsch, Donald Franklin, David B Clifford, Ann Collier, Benjamin Gelman, Christina Marra, John Allen McCutchan, Allison Navis, Ned Sacktor, David Simpson, Igor Grant, Scott LetendreAIDS (London, England)2019-02-01
Quantitative Multiplex Substrate Profiling of Peptidases by Mass Spectrometry.John D Lapek, Zhenze Jiang, Jacob M Wozniak, Elena Arutyunova, Steven C Wang, M Joanne Lemieux, David J Gonzalez, Anthony J O'DonoghueMolecular & Cellular Proteomics : MCP2019-01-31
Calour: an Interactive, Microbe-Centric Analysis Tool.Zhenjiang Zech Xu, Amnon Amir, Jon Sanders, Qiyun Zhu, James T Morton, Molly C Bletz, Anupriya Tripathi, Shi Huang, Daniel McDonald, Lingjing Jiang, Rob KnightMSystems2019-01-29
Lugdunomycin, an Angucycline-Derived Molecule with Unprecedented Chemical Architecture.Changsheng Wu, Helga U van der Heul, Alexey V Melnik, Jens Lübben, Pieter C Dorrestein, Adriaan J Minnaard, Young Hae Choi, Gilles P van WezelAngewandte Chemie (International Ed. In English)2019-01-29
Pseudogene repair driven by selection pressure applied in experimental evolution.Amitesh Anand, Connor A Olson, Laurence Yang, Anand V Sastry, Edward Catoiu, Kumari Sonal Choudhary, Patrick V Phaneuf, Troy E Sandberg, Sibei Xu, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O PalssonNature Microbiology2019-01-28
Bovine colostrum-driven modulation of intestinal epithelial cells for increased commensal colonisation.Sinead T Morrin, Jonathan A Lane, Mariarosaria Marotta, Lars Bode, Stephen D Carrington, Jane A Irwin, Rita M HickeyApplied Microbiology And Biotechnology2019-01-26
The y-ome defines the 35% of Escherichia coli genes that lack experimental evidence of function.Sankha Ghatak, Zachary A King, Anand Sastry, Bernhard O PalssonNucleic Acids Research2019-01-26
Glucose 6-phosphate dehydrogenase 6-phosphogluconolactonase: characterization of the Plasmodium vivax enzyme and inhibitor studies.Kristina Haeussler, Isabell Berneburg, Esther Jortzik, Julia Hahn, Mahsa Rahbari, Norma Schulz, Janina Preuss, Viktor A Zapol'skii, Lars Bode, Anthony B Pinkerton, Dieter E Kaufmann, Stefan Rahlfs, Katja BeckerMalaria Journal2019-01-25
Insights into Thiotemplated Pyrrole Biosynthesis Gained from the Crystal Structure of Flavin-Dependent Oxidase in Complex with Carrier Protein.Hem R Thapa, John M Robbins, Bradley S Moore, Vinayak AgarwalBiochemistry2019-01-23
Challenges in Quantifying Cytosine Methylation in the HIV Provirus.Sarah A LaMere, Antoine Chaillon, Christina Huynh, Davey M Smith, Sara GianellaMBio2019-01-22
Exposure to a Healthy Gut Microbiome Protects Against Reproductive and Metabolic Dysregulation in a PCOS Mouse Model.Pedro J Torres, Bryan S Ho, Pablo Arroyo, Lillian Sau, Annie Chen, Scott T Kelley, Varykina G ThackrayEndocrinology2019-01-22
Role of the microbiome in human development.Maria Gloria Dominguez-Bello, Filipa Godoy-Vitorino, Rob Knight, Martin J BlaserGut2019-01-22
Dilute bleach baths used for treatment of atopic dermatitis are not antimicrobial in vitro.Yu Sawada, Yun Tong, Mariam Barangi, Tissa Hata, Michael R Williams, Teruaki Nakatsuji, Richard L GalloThe Journal Of Allergy And Clinical Immunology2019-01-21
Essential metabolism for a minimal cell.Marian Breuer, Tyler M Earnest, Chuck Merryman, Kim S Wise, Lijie Sun, Michaela R Lynott, Clyde A Hutchison, Hamilton O Smith, John D Lapek, David J Gonzalez, Valérie de Crécy-Lagard, Drago Haas, Andrew D Hanson, Piyush Labhsetwar, John I Glass, Zaida Luthey-SchultenELife2019-01-18
Barriers to Minimizing Respiratory Viral Testing in Bronchiolitis: Physician Perceptions on Testing Practices.Maria Z Huang, Kyung E Rhee, Lauren Gist, Erin S FisherHospital Pediatrics2019-01-15
Antagonistic paralogs control a switch between growth and pathogen resistance in C. elegans.Kirthi C Reddy, Tal Dror, Ryan S Underwood, Guled A Osman, Corrina R Elder, Christopher A Desjardins, Christina A Cuomo, Michalis Barkoulas, Emily R TroemelPLoS Pathogens2019-01-14
Crystal structure of a Thermus aquaticus diversity-generating retroelement variable protein.Sumit Handa, Kharissa L Shaw, Partho GhoshPloS One2019-01-10
The etiology and management of recurrent urinary tract infections in postmenopausal women.Carrie Jung, Linda BrubakerClimacteric : The Journal Of The International Menopause Society2019-01-09
DynamicME: dynamic simulation and refinement of integrated models of metabolism and protein expression.Laurence Yang, Ali Ebrahim, Colton J Lloyd, Michael A Saunders, Bernhard O PalssonBMC Systems Biology2019-01-09
A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types.Yara Seif, Jonathan M Monk, Nathan Mih, Hannah Tsunemoto, Saugat Poudel, Cristal Zuniga, Jared Broddrick, Karsten Zengler, Bernhard O PalssonPLoS Computational Biology2019-01-09
To NET or not to NET:current opinions and state of the science regarding the formation of neutrophil extracellular traps.Sebastian Boeltz, Poorya Amini, Hans-Joachim Anders, Felipe Andrade, Rostyslav Bilyy, Simon Chatfield, Iwona Cichon, Danielle M Clancy, Jyaysi Desai, Tetiana Dumych, Nishant Dwivedi, Rachael Ann Gordon, Jonas Hahn, Andrés Hidalgo, Markus H Hoffmann, Mariana J Kaplan, Jason S Knight, Elzbieta Kolaczkowska, Paul Kubes, Moritz Leppkes, Angelo A Manfredi, Seamus J Martin, Christian Maueröder, Norma Maugeri, Ioannis Mitroulis, Luis E Munoz, Daigo Nakazawa, Indira Neeli, Victor Nizet, Elmar Pieterse, Marko Z Radic, Christiane Reinwald, Konstantinos Ritis, Patrizia Rovere-Querini, Michal Santocki, Christine Schauer, Georg Schett, Mark Jay Shlomchik, Hans-Uwe Simon, Panagiotis Skendros, Darko Stojkov, Peter Vandenabeele, Tom Vanden Berghe, Johan van der Vlag, Ljubomir Vitkov, Maren von Köckritz-Blickwede, Shida Yousefi, Alexander Zarbock, Martin HerrmannCell Death And Differentiation2019-01-08
Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi.Jason M Peters, Byoung-Mo Koo, Ramiro Patino, Gary E Heussler, Cameron C Hearne, Jiuxin Qu, Yuki F Inclan, John S Hawkins, Candy H S Lu, Melanie R Silvis, M Michael Harden, Hendrik Osadnik, Joseph E Peters, Joanne N Engel, Rachel J Dutton, Alan D Grossman, Carol A Gross, Oren S RosenbergNature Microbiology2019-01-07
Probiotic fengycins dis(Agr)ee with Staphylococcus aureus colonization.Lawton K Chung, Manuela RaffatelluCell Research2019-01-05
A longitudinal systems immunologic investigation of acute Zika virus infection in an individual infected while traveling to Caracas, Venezuela.Aaron F Carlin, Jinsheng Wen, Edward A Vizcarra, Melanie McCauley, Antoine Chaillon, Kevan Akrami, Cheryl Kim, Annie Elong Ngono, Maria Luz Lara-Marquez, Davey M Smith, Christopher K Glass, Robert T Schooley, Christopher Benner, Sujan ShrestaPLoS Neglected Tropical Diseases2018-12-31
A Blueprint for Systems Biology.Trey Ideker, Leroy HoodClinical Chemistry2018-12-28
Age-Related Loss of Innate Immune Antimicrobial Function of Dermal Fat Is Mediated by Transforming Growth Factor Beta.Ling-Juan Zhang, Stella Xiang Chen, Christian F Guerrero-Juarez, Fengwu Li, Yun Tong, Yuqiong Liang, Marc Liggins, Xu Chen, Hao Chen, Min Li, Tissa Hata, Ye Zheng, Maksim V Plikus, Richard L GalloImmunity2018-12-26
Inpatient Mortality After Endoscopic Sinus Surgery for Invasive Fungal Rhinosinusitis.Brittany N Burton, Aria Jafari, Betial Asmerom, Matthew W Swisher, Rodney A Gabriel, Adam DeCondeThe Annals Of Otology, Rhinology, And Laryngology2018-12-25
Flavin-based metabolic cycles are integral features of growth and division in single yeast cells.Bridget L Baumgartner, Richard O'Laughlin, Meng Jin, Lev S Tsimring, Nan Hao, Jeff HastyScientific Reports2018-12-21
Identification of Microbial Dark Matter in Antarctic Environments.Jeff S BowmanFrontiers In Microbiology2018-12-19
Reframing gene essentiality in terms of adaptive flexibility.Gabriela I Guzmán, Connor A Olson, Ying Hefner, Patrick V Phaneuf, Edward Catoiu, Lais B Crepaldi, Lucas Goldschmidt Micas, Bernhard O Palsson, Adam M FeistBMC Systems Biology2018-12-17
Sea Spray Aerosol: Where Marine Biology Meets Atmospheric Chemistry.Jamie M Schiffer, Liora E Mael, Kimberly A Prather, Rommie E Amaro, Vicki H GrassianACS Central Science2018-12-14
Total Enzyme Syntheses of Napyradiomycins A1 and B1.Shaun M K McKinnie, Zachary D Miles, Peter A Jordan, Takayoshi Awakawa, Henry P Pepper, Lauren A M Murray, Jonathan H George, Bradley S MooreJournal Of The American Chemical Society2018-12-14
Phototaxis in a wild isolate of the cyanobacterium .Yiling Yang, Vinson Lam, Marie Adomako, Ryan Simkovsky, Annik Jakob, Nathan C Rockwell, Susan E Cohen, Arnaud Taton, Jingtong Wang, J Clark Lagarias, Annegret Wilde, David R Nobles, Jerry J Brand, Susan S GoldenProceedings Of The National Academy Of Sciences Of The United States Of America2018-12-14
Genetic Network Analysis to Assess the Risk of Human Immunodeficiency Virus Transmission Among Men Who Have Sex With Men Seeking Partners on the Internet.Thomas C S Martin, Antoine Chaillon, Susannah K Graves, Timothy Lin, Sara Gianella, Davey M Smith, Susan J Little, Martin HoeniglClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2018-12-13
Gut Microbial Divergence between Two Populations of the Hadal Amphipod Hirondellea gigas.Weipeng Zhang, Hiromi Kayama Watanabe, Wei Ding, Yi Lan, Ren-Mao Tian, Jin Sun, Chong Chen, Lin Cai, Yongxin Li, Kazumasa Oguri, Takashi Toyofuku, Hiroshi Kitazato, Jeffrey C Drazen, Douglas Bartlett, Pei-Yuan QianApplied And Environmental Microbiology2018-12-13
Effects of HIV on executive function and verbal fluency in Cameroon.Georgette D Kanmogne, Julius Y Fonsah, Bin Tang, Roland F Doh, Anne M Kengne, Anya Umlauf, Claude T Tagny, Emilienne Nchindap, Léopoldine Kenmogne, Donald Franklin, Dora M Njamnshi, Dora Mbanya, Alfred K Njamnshi, Robert K HeatonScientific Reports2018-12-12
Peripheral Blood Mitochondrial DNA Copy Number Obtained From Genome-Wide Genotype Data Is Associated With Neurocognitive Impairment in Persons With Chronic HIV Infection.Todd Hulgan, Asha R Kallianpur, Yan Guo, Jill S Barnholtz-Sloan, Haley Gittleman, Todd T Brown, Ronald Ellis, Scott Letendre, Robert K Heaton, David C Samuels, Journal Of Acquired Immune Deficiency Syndromes (1999)2018-12-12
Cognitive Impairment in Zambians With HIV Infection and Pulmonary Tuberculosis.Knut A Hestad, Jonathan Chinyama, Menon J Anitha, Mary S Ngoma, J Allen McCutchan, Donald R Franklin, Robert K HeatonJournal Of Acquired Immune Deficiency Syndromes (1999)2018-12-12
Vaccine-Induced Protection from Homologous Tier 2 SHIV Challenge in Nonhuman Primates Depends on Serum-Neutralizing Antibody Titers.Matthias G Pauthner, Joseph P Nkolola, Colin Havenar-Daughton, Ben Murrell, Samantha M Reiss, Raiza Bastidas, Jérémie Prévost, Rebecca Nedellec, Benjamin von Bredow, Peter Abbink, Christopher A Cottrell, Daniel W Kulp, Talar Tokatlian, Bartek Nogal, Matteo Bianchi, Hui Li, Jeong Hyun Lee, Salvatore T Butera, David T Evans, Lars Hangartner, Andrés Finzi, Ian A Wilson, Richard T Wyatt, Darrell J Irvine, William R Schief, Andrew B Ward, Rogier W Sanders, Shane Crotty, George M Shaw, Dan H Barouch, Dennis R BurtonImmunity2018-12-11
The role of the skin microbiome in atopic dermatitis.Teruaki Nakatsuji, Richard L GalloAnnals Of Allergy, Asthma & Immunology : Official Publication Of The American College Of Allergy, Asthma, & Immunology2018-12-11
Modeling genome-wide enzyme evolution predicts strong epistasis underlying catalytic turnover rates.David Heckmann, Daniel C Zielinski, Bernhard O PalssonNature Communications2018-12-10
GABA-modulating bacteria of the human gut microbiota.Philip Strandwitz, Ki Hyun Kim, Darya Terekhova, Joanne K Liu, Anukriti Sharma, Jennifer Levering, Daniel McDonald, David Dietrich, Timothy R Ramadhar, Asama Lekbua, Nader Mroue, Conor Liston, Eric J Stewart, Marc J Dubin, Karsten Zengler, Rob Knight, Jack A Gilbert, Jon Clardy, Kim LewisNature Microbiology2018-12-10
Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models.David Heckmann, Colton J Lloyd, Nathan Mih, Yuanchi Ha, Daniel C Zielinski, Zachary B Haiman, Abdelmoneim Amer Desouki, Martin J Lercher, Bernhard O PalssonNature Communications2018-12-07
Group A Streptococcal S Protein Utilizes Red Blood Cells as Immune Camouflage and Is a Critical Determinant for Immune Evasion.Igor H Wierzbicki, Anaamika Campeau, Diana Dehaini, Maya Holay, Xiaoli Wei, Trever Greene, Man Ying, Jenna S Sands, Anne Lamsa, Elina Zuniga, Kit Pogliano, Ronnie H Fang, Christopher N LaRock, Liangfang Zhang, David J GonzalezCell Reports2018-12-05
Urobiome updates: advances in urinary microbiome research.Alan J Wolfe, Linda BrubakerNature Reviews. Urology2018-12-05
A Hard Day's Night: Cyanobacteria in Diel Cycles.David G Welkie, Benjamin E Rubin, Spencer Diamond, Rachel D Hood, David F Savage, Susan S GoldenTrends In Microbiology2018-12-05
Ketoreductase Domain Dysfunction Expands Chemodiversity: Malyngamide Biosynthesis in the Cyanobacterium Okeania hirsuta.Nathan A Moss, Tiago Leão, Michael R Rankin, Tyler M McCullough, Pingping Qu, Anton Korobeynikov, Janet L Smith, Lena Gerwick, William H GerwickACS Chemical Biology2018-12-03
Erratum to: The sponge microbiome project.Lucas Moitinho-Silva, Shaun Nielsen, Amnon Amir, Antonio Gonzalez, Gail L Ackermann, Carlo Cerrano, Carmen Astudillo-Garcia, Cole Easson, Detmer Sipkema, Fang Liu, Georg Steinert, Giorgos Kotoulas, Grace P McCormack, Guofang Feng, James J Bell, Jan Vicente, Johannes R Björk, Jose M Montoya, Julie B Olson, Julie Reveillaud, Laura Steindler, Mari-Carmen Pineda, Maria V Marra, Micha Ilan, Michael W Taylor, Paraskevi Polymenakou, Patrick M Erwin, Peter J Schupp, Rachel L Simister, Rob Knight, Robert W Thacker, Rodrigo Costa, Russell T Hill, Susanna Lopez-Legentil, Thanos Dailianis, Timothy Ravasi, Ute Hentschel, Zhiyong Li, Nicole S Webster, Torsten ThomasGigaScience2018-12-01
Sex, Microbes, and Polycystic Ovary Syndrome.Varykina G ThackrayTrends In Endocrinology And Metabolism: TEM2018-11-29
Baseline Genotype Testing to Assess Drug Resistance Before Beginning HIV Treatment-Reply.Michael S Saag, Huldrych F Günthard, Davey M SmithJAMA2018-11-28
Neolymphostin A Is a Covalent Phosphoinositide 3-Kinase (PI3K)/Mammalian Target of Rapamycin (mTOR) Dual Inhibitor That Employs an Unusual Electrophilic Vinylogous Ester.Gabriel Castro-Falcón, Grant S Seiler, Özlem Demir, Manoj K Rathinaswamy, David Hamelin, Reece M Hoffmann, Stefanie L Makowski, Anne-Catrin Letzel, Seth J Field, John E Burke, Rommie E Amaro, Chambers C HughesJournal Of Medicinal Chemistry2018-11-28
Human milk oligosaccharides, milk microbiome and infant gut microbiome modulate neonatal rotavirus infection.Sasirekha Ramani, Christopher J Stewart, Daniel R Laucirica, Nadim J Ajami, Bianca Robertson, Chloe A Autran, Dhairyasheel Shinge, Sandya Rani, Sasirekha Anandan, Liya Hu, Josephine C Ferreon, Kurien A Kuruvilla, Joseph F Petrosino, B V Venkataram Prasad, Lars Bode, Gagandeep Kang, Mary K EstesNature Communications2018-11-27
Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations.Raphael Eisenhofer, Jeremiah J Minich, Clarisse Marotz, Alan Cooper, Rob Knight, Laura S WeyrichTrends In Microbiology2018-11-26
Next steps in studying the human microbiome and health in prospective studies, Bethesda, MD, May 16-17, 2017.Rashmi Sinha, Habibul Ahsan, Martin Blaser, J Gregory Caporaso, Joseph Russell Carmical, Andrew T Chan, Anthony Fodor, Mitchell H Gail, Curtis C Harris, Kathy Helzlsouer, Curtis Huttenhower, Rob Knight, Heidi H Kong, Gabriel Y Lai, Diane Leigh Smith Hutchinson, Loic Le Marchand, Hongzhe Li, Michael J Orlich, Jianxin Shi, Ann Truelove, Mukesh Verma, Emily Vogtmann, Owen White, Walter Willett, Wei Zheng, Somdat Mahabir, Christian AbnetMicrobiome2018-11-26
The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus.Alison Vrbanac, Angelica M Riestra, Alison Coady, Rob Knight, Victor Nizet, Kathryn A PatrasBMC Microbiology2018-11-26
Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines.Clotilde Théry, Kenneth W Witwer, Elena Aikawa, Maria Jose Alcaraz, Johnathon D Anderson, Ramaroson Andriantsitohaina, Anna Antoniou, Tanina Arab, Fabienne Archer, Georgia K Atkin-Smith, D Craig Ayre, Jean-Marie Bach, Daniel Bachurski, Hossein Baharvand, Leonora Balaj, Shawn Baldacchino, Natalie N Bauer, Amy A Baxter, Mary Bebawy, Carla Beckham, Apolonija Bedina Zavec, Abderrahim Benmoussa, Anna C Berardi, Paolo Bergese, Ewa Bielska, Cherie Blenkiron, Sylwia Bobis-Wozowicz, Eric Boilard, Wilfrid Boireau, Antonella Bongiovanni, Francesc E Borràs, Steffi Bosch, Chantal M Boulanger, Xandra Breakefield, Andrew M Breglio, Meadhbh Á Brennan, David R Brigstock, Alain Brisson, Marike Ld Broekman, Jacqueline F Bromberg, Paulina Bryl-Górecka, Shilpa Buch, Amy H Buck, Dylan Burger, Sara Busatto, Dominik Buschmann, Benedetta Bussolati, Edit I Buzás, James Bryan Byrd, Giovanni Camussi, David Rf Carter, Sarah Caruso, Lawrence W Chamley, Yu-Ting Chang, Chihchen Chen, Shuai Chen, Lesley Cheng, Andrew R Chin, Aled Clayton, Stefano P Clerici, Alex Cocks, Emanuele Cocucci, Robert J Coffey, Anabela Cordeiro-da-Silva, Yvonne Couch, Frank Aw Coumans, Beth Coyle, Rossella Crescitelli, Miria Ferreira Criado, Crislyn D'Souza-Schorey, Saumya Das, Amrita Datta Chaudhuri, Paola de Candia, Eliezer F De Santana, Olivier De Wever, Hernando A Del Portillo, Tanguy Demaret, Sarah Deville, Andrew Devitt, Bert Dhondt, Dolores Di Vizio, Lothar C Dieterich, Vincenza Dolo, Ana Paula Dominguez Rubio, Massimo Dominici, Mauricio R Dourado, Tom Ap Driedonks, Filipe V Duarte, Heather M Duncan, Ramon M Eichenberger, Karin Ekström, Samir El Andaloussi, Celine Elie-Caille, Uta Erdbrügger, Juan M Falcón-Pérez, Farah Fatima, Jason E Fish, Miguel Flores-Bellver, András Försönits, Annie Frelet-Barrand, Fabia Fricke, Gregor Fuhrmann, Susanne Gabrielsson, Ana Gámez-Valero, Chris Gardiner, Kathrin Gärtner, Raphael Gaudin, Yong Song Gho, Bernd Giebel, Caroline Gilbert, Mario Gimona, Ilaria Giusti, Deborah Ci Goberdhan, André Görgens, Sharon M Gorski, David W Greening, Julia Christina Gross, Alice Gualerzi, Gopal N Gupta, Dakota Gustafson, Aase Handberg, Reka A Haraszti, Paul Harrison, Hargita Hegyesi, An Hendrix, Andrew F Hill, Fred H Hochberg, Karl F Hoffmann, Beth Holder, Harry Holthofer, Baharak Hosseinkhani, Guoku Hu, Yiyao Huang, Veronica Huber, Stuart Hunt, Ahmed Gamal-Eldin Ibrahim, Tsuneya Ikezu, Jameel M Inal, Mustafa Isin, Alena Ivanova, Hannah K Jackson, Soren Jacobsen, Steven M Jay, Muthuvel Jayachandran, Guido Jenster, Lanzhou Jiang, Suzanne M Johnson, Jennifer C Jones, Ambrose Jong, Tijana Jovanovic-Talisman, Stephanie Jung, Raghu Kalluri, Shin-Ichi Kano, Sukhbir Kaur, Yumi Kawamura, Evan T Keller, Delaram Khamari, Elena Khomyakova, Anastasia Khvorova, Peter Kierulf, Kwang Pyo Kim, Thomas Kislinger, Mikael Klingeborn, David J Klinke, Miroslaw Kornek, Maja M Kosanović, Árpád Ferenc Kovács, Eva-Maria Krämer-Albers, Susanne Krasemann, Mirja Krause, Igor V Kurochkin, Gina D Kusuma, Sören Kuypers, Saara Laitinen, Scott M Langevin, Lucia R Languino, Joanne Lannigan, Cecilia Lässer, Louise C Laurent, Gregory Lavieu, Elisa Lázaro-Ibáñez, Soazig Le Lay, Myung-Shin Lee, Yi Xin Fiona Lee, Debora S Lemos, Metka Lenassi, Aleksandra Leszczynska, Isaac Ts Li, Ke Liao, Sten F Libregts, Erzsebet Ligeti, Rebecca Lim, Sai Kiang Lim, Aija Linē, Karen Linnemannstöns, Alicia Llorente, Catherine A Lombard, Magdalena J Lorenowicz, Ákos M Lörincz, Jan Lötvall, Jason Lovett, Michelle C Lowry, Xavier Loyer, Quan Lu, Barbara Lukomska, Taral R Lunavat, Sybren Ln Maas, Harmeet Malhi, Antonio Marcilla, Jacopo Mariani, Javier Mariscal, Elena S Martens-Uzunova, Lorena Martin-Jaular, M Carmen Martinez, Vilma Regina Martins, Mathilde Mathieu, Suresh Mathivanan, Marco Maugeri, Lynda K McGinnis, Mark J McVey, David G Meckes, Katie L Meehan, Inge Mertens, Valentina R Minciacchi, Andreas Möller, Malene Møller Jørgensen, Aizea Morales-Kastresana, Jess Morhayim, François Mullier, Maurizio Muraca, Luca Musante, Veronika Mussack, Dillon C Muth, Kathryn H Myburgh, Tanbir Najrana, Muhammad Nawaz, Irina Nazarenko, Peter Nejsum, Christian Neri, Tommaso Neri, Rienk Nieuwland, Leonardo Nimrichter, John P Nolan, Esther Nm Nolte-'t Hoen, Nicole Noren Hooten, Lorraine O'Driscoll, Tina O'Grady, Ana O'Loghlen, Takahiro Ochiya, Martin Olivier, Alberto Ortiz, Luis A Ortiz, Xabier Osteikoetxea, Ole Østergaard, Matias Ostrowski, Jaesung Park, D Michiel Pegtel, Hector Peinado, Francesca Perut, Michael W Pfaffl, Donald G Phinney, Bartijn Ch Pieters, Ryan C Pink, David S Pisetsky, Elke Pogge von Strandmann, Iva Polakovicova, Ivan Kh Poon, Bonita H Powell, Ilaria Prada, Lynn Pulliam, Peter Quesenberry, Annalisa Radeghieri, Robert L Raffai, Stefania Raimondo, Janusz Rak, Marcel I Ramirez, Graça Raposo, Morsi S Rayyan, Neta Regev-Rudzki, Franz L Ricklefs, Paul D Robbins, David D Roberts, Silvia C Rodrigues, Eva Rohde, Sophie Rome, Kasper Ma Rouschop, Aurelia Rughetti, Ashley E Russell, Paula Saá, Susmita Sahoo, Edison Salas-Huenuleo, Catherine Sánchez, Julie A Saugstad, Meike J Saul, Raymond M Schiffelers, Raphael Schneider, Tine Hiorth Schøyen, Aaron Scott, Eriomina Shahaj, Shivani Sharma, Olga Shatnyeva, Faezeh Shekari, Ganesh Vilas Shelke, Ashok K Shetty, Kiyotaka Shiba, Pia R-M Siljander, Andreia M Silva, Agata Skowronek, Orman L Snyder, Rodrigo Pedro Soares, Barbara W Sódar, Carolina Soekmadji, Javier Sotillo, Philip D Stahl, Willem Stoorvogel, Shannon L Stott, Erwin F Strasser, Simon Swift, Hidetoshi Tahara, Muneesh Tewari, Kate Timms, Swasti Tiwari, Rochelle Tixeira, Mercedes Tkach, Wei Seong Toh, Richard Tomasini, Ana Claudia Torrecilhas, Juan Pablo Tosar, Vasilis Toxavidis, Lorena Urbanelli, Pieter Vader, Bas Wm van Balkom, Susanne G van der Grein, Jan Van Deun, Martijn Jc van Herwijnen, Kendall Van Keuren-Jensen, Guillaume van Niel, Martin E van Royen, Andre J van Wijnen, M Helena Vasconcelos, Ivan J Vechetti, Tiago D Veit, Laura J Vella, Émilie Velot, Frederik J Verweij, Beate Vestad, Jose L Viñas, Tamás Visnovitz, Krisztina V Vukman, Jessica Wahlgren, Dionysios C Watson, Marca Hm Wauben, Alissa Weaver, Jason P Webber, Viktoria Weber, Ann M Wehman, Daniel J Weiss, Joshua A Welsh, Sebastian Wendt, Asa M Wheelock, Zoltán Wiener, Leonie Witte, Joy Wolfram, Angeliki Xagorari, Patricia Xander, Jing Xu, Xiaomei Yan, María Yáñez-Mó, Hang Yin, Yuana Yuana, Valentina Zappulli, Jana Zarubova, Vytautas Žėkas, Jian-Ye Zhang, Zezhou Zhao, Lei Zheng, Alexander R Zheutlin, Antje M Zickler, Pascale Zimmermann, Angela M Zivkovic, Davide Zocco, Ewa K Zuba-SurmaJournal Of Extracellular Vesicles2018-11-23
The microbiome in patients with atopic dermatitis.Amy S Paller, Heidi H Kong, Patrick Seed, Shruti Naik, Tiffany C Scharschmidt, Richard L Gallo, Thomas Luger, Alan D IrvineThe Journal Of Allergy And Clinical Immunology2018-11-23
Tamm-Horsfall Protein Protects the Urinary Tract against .Alison Coady, Anissa R Ramos, Joshua Olson, Victor Nizet, Kathryn A PatrasInfection And Immunity2018-11-20
Bacteria engineered to produce IL-22 in intestine induce expression of REG3G to reduce ethanol-induced liver disease in mice.Tim Hendrikx, Yi Duan, Yanhan Wang, Jee-Hwan Oh, Laura M Alexander, Wendy Huang, Peter Stärkel, Samuel B Ho, Bei Gao, Oliver Fiehn, Patrick Emond, Harry Sokol, Jan-Peter van Pijkeren, Bernd SchnablGut2018-11-17
Rapid Inhibition Profiling Identifies a Keystone Target in the Nucleotide Biosynthesis Pathway.Christine E Peters, Anne Lamsa, Roland B Liu, Diana Quach, Joseph Sugie, Lauren Brumage, Joe Pogliano, Javier Lopez-Garrido, Kit PoglianoACS Chemical Biology2018-11-15
Revealing Key Determinants of Clonal Variation in Transgene Expression in Recombinant CHO Cells Using Targeted Genome Editing.Jae Seong Lee, Jin Hyoung Park, Tae Kwang Ha, Mojtaba Samoudi, Nathan E Lewis, Bernhard O Palsson, Helene Faustrup Kildegaard, Gyun Min LeeACS Synthetic Biology2018-11-14
Rock-paper-scissors: Engineered population dynamics increase genetic stability.Michael J Liao, M Omar Din, Lev Tsimring, Jeff HastyScience (New York, N.Y.)2018-11-14
Brief Report: Body Mass Index and Cognitive Function Among HIV-1-Infected Individuals in China, India, and Nigeria.Jibreel Jumare, Samer S El-Kamary, Laurence Magder, Laura Hungerford, Anya Umlauf, Donald Franklin, Manisha Ghate, Alashʼle Abimiku, Man Charurat, Scott Letendre, Ronald J Ellis, Sanjay Mehendale, William A Blattner, Walter Royal, Thomas D Marcotte, Robert K Heaton, Igor Grant, John A McCutchanJournal Of Acquired Immune Deficiency Syndromes (1999)2018-11-14
Evaluating the Information Content of Shallow Shotgun Metagenomics.Benjamin Hillmann, Gabriel A Al-Ghalith, Robin R Shields-Cutler, Qiyun Zhu, Daryl M Gohl, Kenneth B Beckman, Rob Knight, Dan KnightsMSystems2018-11-13
Identifying and Predicting Novelty in Microbiome Studies.Xiaoquan Su, Gongchao Jing, Daniel McDonald, Honglei Wang, Zengbin Wang, Antonio Gonzalez, Zheng Sun, Shi Huang, Jose Navas, Rob Knight, Jian XuMBio2018-11-13
Predicting the metabolic capabilities of Synechococcus elongatus PCC 7942 adapted to different light regimes.Jared T Broddrick, David G Welkie, Denis Jallet, Susan S Golden, Graham Peers, Bernhard O PalssonMetabolic Engineering2018-11-13
A Computational Assay that Explores the Hemagglutinin/Neuraminidase Functional Balance Reveals the Neuraminidase Secondary Site as a Novel Anti-Influenza Target.Rommie E Amaro, Pek U Ieong, Gary Huber, Abigail Dommer, Alasdair C Steven, Robin M Bush, Jacob D Durrant, Lane W VotapkaACS Central Science2018-11-09
Sugar-stimulated CO sequestration by the green microalga Chlorella vulgaris.Weiqi Fu, Steinn Gudmundsson, Kristine Wichuk, Sirus Palsson, Bernhard O Palsson, Kourosh Salehi-Ashtiani, Sigurður BrynjólfssonThe Science Of The Total Environment2018-11-09
Trace Evidence Potential in Postmortem Skin Microbiomes: From Death Scene to Morgue.Whitney A Kodama, Zhenjiang Xu, Jessica L Metcalf, Se Jin Song, Nicholas Harrison, Rob Knight, David O Carter, Christopher B HappyJournal Of Forensic Sciences2018-11-08
Trait-like vulnerability of higher-order cognition and ability to maintain wakefulness during combined sleep restriction and circadian misalignment.Kate E Sprecher, Hannah K Ritchie, Tina M Burke, Christopher M Depner, Alexandra N Smits, Pieter C Dorrestein, Monika Fleshner, Rob Knight, Christopher A Lowry, Fred W Turek, Martha H Vitaterna, Kenneth P WrightSleep2018-11-08
TLR Activation Alters Bone Marrow-Derived Macrophage Differentiation.Gertrude O Oppong-Nonterah, Omar Lakhdari, Asami Yamamura, Hal M Hoffman, Lawrence S PrinceJournal Of Innate Immunity2018-11-08
High-Throughput Miniaturized 16S rRNA Amplicon Library Preparation Reduces Costs while Preserving Microbiome Integrity.Jeremiah J Minich, Greg Humphrey, Rodolfo A S Benitez, Jon Sanders, Austin Swafford, Eric E Allen, Rob KnightMSystems2018-11-06
Multiple Sclerosis-Associated Changes in the Composition and Immune Functions of Spore-Forming Bacteria.Egle Cekanaviciute, Anne-Katrin Pröbstel, Anna Thomann, Tessel F Runia, Patrizia Casaccia, Ilana Katz Sand, Elizabeth Crabtree, Sneha Singh, John Morrissey, Patrick Barba, Refujia Gomez, Rob Knight, Sarkis Mazmanian, Jennifer Graves, Bruce A C Cree, Scott S Zamvil, Sergio E BaranziniMSystems2018-11-06
A Rapid and Low-Cost Pathogen Detection Platform by Using a Molecular Agglutination Assay.Tsung-Feng Wu, Yu-Chen Chen, Wei-Chung Wang, Yen-Chi Fang, Scott Fukuoka, David T Pride, On Shun PakACS Central Science2018-11-05
Antimicrobial proteins: intestinal guards to protect against liver disease.Tim Hendrikx, Bernd SchnablJournal Of Gastroenterology2018-11-03
Enhanced topical delivery of non-complexed molecular iodine for Methicillin-resistant Staphylococcus aureus decolonization.Satoshi Uchiyama, Samira Dahesh, Victor Nizet, Jack KesslerInternational Journal Of Pharmaceutics2018-11-02
AACR White Paper: Shaping the Future of Cancer Prevention - A Roadmap for Advancing Science and Public Health.Scott M Lippman, Cory Abate-Shen, Karen L Colbert Maresso, Graham A Colditz, Andrew J Dannenberg, Nancy E Davidson, Mary L Disis, Raymond N DuBois, Eva Szabo, Anna R Giuliano, William N Hait, J Jack Lee, Thomas W Kensler, Barnett S Kramer, Paul Limburg, Anirban Maitra, Maria Elena Martinez, Timothy R Rebbeck, Kathryn H Schmitz, Eduardo Vilar, Ernest T HawkCancer Prevention Research (Philadelphia, Pa.)2018-11-02
Ethylene signaling regulates natural variation in the abundance of antifungal acetylated diferuloylsucroses and Fusarium graminearum resistance in maize seedling roots.Shaoqun Zhou, Ying K Zhang, Karl A Kremling, Yezhang Ding, John S Bennett, Justin S Bae, Dean K Kim, Hayley H Ackerman, Michael V Kolomiets, Eric A Schmelz, Frank C Schroeder, Edward S Buckler, Georg JanderThe New Phytologist2018-11-02
Host-parasite interactions: an interview with Emily Troemel.Emily TroemelBMC Biology2018-11-01
Striped UniFrac: enabling microbiome analysis at unprecedented scale.Daniel McDonald, Yoshiki Vázquez-Baeza, David Koslicki, Jason McClelland, Nicolai Reeve, Zhenjiang Xu, Antonio Gonzalez, Rob KnightNature Methods2018-11-01
Metagenomics-Based, Strain-Level Analysis of From a Time-Series of Microbiome Samples From a Crohn's Disease Patient.Xin Fang, Jonathan M Monk, Sergey Nurk, Margarita Akseshina, Qiyun Zhu, Christopher Gemmell, Connor Gianetto-Hill, Nelly Leung, Richard Szubin, Jon Sanders, Paul L Beck, Weizhong Li, William J Sandborn, Scott D Gray-Owen, Rob Knight, Emma Allen-Vercoe, Bernhard O Palsson, Larry SmarrFrontiers In Microbiology2018-10-30
Species-level functional profiling of metagenomes and metatranscriptomes.Eric A Franzosa, Lauren J McIver, Gholamali Rahnavard, Luke R Thompson, Melanie Schirmer, George Weingart, Karen Schwarzberg Lipson, Rob Knight, J Gregory Caporaso, Nicola Segata, Curtis HuttenhowerNature Methods2018-10-30
Microfluidics-Based Analysis of Contact-dependent Bacterial Interactions.Robert Cooper, Lev Tsimring, Jeff HastyBio-protocol2018-10-30
Inflammation Relates to Poorer Complex Motor Performance Among Adults Living With HIV on Suppressive Antiretroviral Therapy.Jessica L Montoya, Laura M Campbell, Emily W Paolillo, Ronald J Ellis, Scott L Letendre, Dilip V Jeste, David J MooreJournal Of Acquired Immune Deficiency Syndromes (1999)2018-10-27
Optimization of carbon and energy utilization through differential translational efficiency.Mahmoud M Al-Bassam, Ji-Nu Kim, Livia S Zaramela, Benjamin P Kellman, Cristal Zuniga, Jacob M Wozniak, David J Gonzalez, Karsten ZenglerNature Communications2018-10-26
Disease-modifying therapies alter gut microbial composition in MS.Ilana Katz Sand, Yunjiao Zhu, Achilles Ntranos, Jose C Clemente, Egle Cekanaviciute, Rachel Brandstadter, Elizabeth Crabtree-Hartman, Sneha Singh, Yadira Bencosme, Justine Debelius, Rob Knight, Bruce A C Cree, Sergio E Baranzini, Patrizia CasacciaNeurology(R) Neuroimmunology & Neuroinflammation2018-10-26
Nitrosopyridine Probe To Detect Polyketide Natural Products with Conjugated Alkenes: Discovery of Novodaryamide and Nocarditriene.Gabriel Castro-Falcón, Natalie Millán-Aguiñaga, Catherine Roullier, Paul R Jensen, Chambers C HughesACS Chemical Biology2018-10-26
Comparison of Multiplex Gastrointestinal Pathogen Panel and Conventional Stool Testing for Evaluation of Diarrhea in Patients with Inflammatory Bowel Diseases.Waseem Ahmad, Nghia H Nguyen, Brigid S Boland, Parambir S Dulai, David T Pride, Daniel Bouland, William J Sandborn, Siddharth SinghDigestive Diseases And Sciences2018-10-25
Gut Microbiota in the First 2 Years of Life and the Association with Body Mass Index at Age 12 in a Norwegian Birth Cohort.Maggie A Stanislawski, Dana Dabelea, Brandie D Wagner, Nina Iszatt, Cecilie Dahl, Marci K Sontag, Rob Knight, Catherine A Lozupone, Merete EggesbøMBio2018-10-23
Exploring the separation power of mixed-modal resins for purification of recombinant osteopontin from clarified Escherichia coli lysates.Shengchun Guo, Ayswarya Ravi, Stephen Mayfield, Zivko L NikolovBiotechnology Progress2018-10-23
A comprehensive understanding of the gut mucosal immune system in allergic inflammation.Daisuke Tokuhara, Yosuke Kurashima, Mariko Kamioka, Toshinori Nakayama, Peter Ernst, Hiroshi KiyonoAllergology International : Official Journal Of The Japanese Society Of Allergology2018-10-23
The Cytokine Profile in Acute Chikungunya Infection is Predictive of Chronic Arthritis 20 Months Post Infection.Aileen Y Chang, Sarah Tritsch, St Patrick Reid, Karen Martins, Liliana Encinales, Nelly Pacheco, Richard L Amdur, Alexandra Porras-Ramirez, Alejandro Rico-Mendoza, Guangzhao Li, Jin Peng, Gary S Firestein, Gary L Simon, Jeff M BethonyDiseases (Basel, Switzerland)2018-10-20
Detection of Epidemic Scarlet Fever Group A Streptococcus in Australia.Mark J Walker, Stephan Brouwer, Brian M Forde, Kate A Worthing, Liam McIntyre, Lana Sundac, Sam Maloney, Leah W Roberts, Timothy C Barnett, Johanna Richter, Amanda J Cork, Adam D Irwin, Yuanhai You, Jianzhong Zhang, Gordon Dougan, Kwok Y Yuen, Victor Nizet, Scott A Beatson, Keith Grimwood, Mark R DaviesClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2018-10-19
The chemical cue tetrabromopyrrole induces rapid cellular stress and mortality in phytoplankton.Kristen E Whalen, Christopher Kirby, Russell M Nicholson, Mia O'Reilly, Bradley S Moore, Elizabeth L HarveyScientific Reports2018-10-19
Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance.Erol S Kavvas, Edward Catoiu, Nathan Mih, James T Yurkovich, Yara Seif, Nicholas Dillon, David Heckmann, Amitesh Anand, Laurence Yang, Victor Nizet, Jonathan M Monk, Bernhard O PalssonNature Communications2018-10-17
Editorial overview: Current Opinion in Microbiology 2018 Special issue 'Microbial systems biology, vol. 45'.Terry Hwa, Uwe SauerCurrent Opinion In Microbiology2018-10-17
Enzyme promiscuity drives branched-chain fatty acid synthesis in adipose tissues.Martina Wallace, Courtney R Green, Lindsay S Roberts, Yujung Michelle Lee, Justin L McCarville, Joan Sanchez-Gurmaches, Noah Meurs, Jivani M Gengatharan, Justin D Hover, Susan A Phillips, Theodore P Ciaraldi, David A Guertin, Pedro Cabrales, Janelle S Ayres, Daniel K Nomura, Rohit Loomba, Christian M MetalloNature Chemical Biology2018-10-16
Streptococcal Lancefield polysaccharides are critical cell wall determinants for human Group IIA secreted phospholipase A2 to exert its bactericidal effects.Vincent P van Hensbergen, Elin Movert, Vincent de Maat, Christian Lüchtenborg, Yoann Le Breton, Gérard Lambeau, Christine Payré, Anna Henningham, Victor Nizet, Jos A G van Strijp, Britta Brügger, Fredric Carlsson, Kevin S McIver, Nina M van SorgePLoS Pathogens2018-10-15
Structural Elucidation of Trace Components Combining GC/MS, GC/IR, DFT-Calculation and Synthesis-Salinilactones, Unprecedented Bicyclic Lactones from Salinispora Bacteria.Christian Schlawis, Simone Kern, Yuta Kudo, Jörg Grunenberg, Bradley S Moore, Stefan SchulzAngewandte Chemie (International Ed. In English)2018-10-15
Differential Activation of Hepatic Invariant NKT Cell Subsets Plays a Key Role in Progression of Nonalcoholic Steatohepatitis.Igor Maricic, Idania Marrero, Akiko Eguchi, Ryota Nakamura, Casey D Johnson, Suryasarathi Dasgupta, Carolyn D Hernandez, Phirum Sam Nguyen, Austin D Swafford, Rob Knight, Ariel E Feldstein, Rohit Loomba, Vipin KumarJournal Of Immunology (Baltimore, Md. : 1950)2018-10-15
Avibactam Sensitizes Carbapenem-Resistant NDM-1-Producing Klebsiella pneumoniae to Innate Immune Clearance.Erlinda R Ulloa, Nicholas Dillon, Hannah Tsunemoto, Joe Pogliano, George Sakoulas, Victor NizetThe Journal Of Infectious Diseases2018-10-11
Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow.Elizabeth Brunk, Roger L Chang, Jing Xia, Hooman Hefzi, James T Yurkovich, Donghyuk Kim, Evan Buckmiller, Harris H Wang, Byung-Kwan Cho, Chen Yang, Bernhard O Palsson, George M Church, Nathan E LewisProceedings Of The National Academy Of Sciences Of The United States Of America2018-10-09
Reply to: "Finding fibroblast growth factor 19 during cholestasis: Does x mark the spot?Katharina Brandl, Phillipp Hartmann, Lily J Jih, Donald P Pizzo, Bernd SchnablJournal Of Hepatology2018-10-06
Preserving microbial diversity.Maria G Dominguez Bello, Rob Knight, Jack A Gilbert, Martin J BlaserScience (New York, N.Y.)2018-10-06
Pangenomic comparison of globally distributed Poribacteria associated with sponge hosts and marine particles.Sheila Podell, Jessica M Blanton, Alexander Neu, Vinayak Agarwal, Jason S Biggs, Bradley S Moore, Eric E AllenThe ISME Journal2018-10-05
White matter damage, neuroinflammation, and neuronal integrity in HAND.Aljoharah Alakkas, Ronald J Ellis, Caitlin Wei-Ming Watson, Anya Umlauf, Robert K Heaton, Scott Letendre, Ann Collier, Christina Marra, David B Clifford, Benjamin Gelman, Ned Sacktor, Susan Morgello, David Simpson, J Allen McCutchan, Asha Kallianpur, Sara Gianella, Thomas Marcotte, Igor Grant, Christine Fennema-Notestine, Journal Of Neurovirology2018-10-05
Integrative genomic analysis of mouse and human hepatocellular carcinoma.Michelle Dow, Rachel M Pyke, Brian Y Tsui, Ludmil B Alexandrov, Hayato Nakagawa, Koji Taniguchi, Ekihiro Seki, Olivier Harismendy, Shabnam Shalapour, Michael Karin, Hannah Carter, Joan Font-BurgadaProceedings Of The National Academy Of Sciences Of The United States Of America2018-10-04
Infants Are Exposed to Human Milk Oligosaccharides Already .Audra Wise, Bianca Robertson, Biswa Choudhury, Samuli Rautava, Erika Isolauri, Seppo Salminen, Lars BodeFrontiers In Pediatrics2018-10-02
Host-microbiome interactions and recent progress into understanding the biology of acne vulgaris.Alan M O'Neill, Richard L GalloMicrobiome2018-10-02
Dereplication of microbial metabolites through database search of mass spectra.Hosein Mohimani, Alexey Gurevich, Alexander Shlemov, Alla Mikheenko, Anton Korobeynikov, Liu Cao, Egor Shcherbin, Louis-Felix Nothias, Pieter C Dorrestein, Pavel A PevznerNature Communications2018-10-02
Qiita: rapid, web-enabled microbiome meta-analysis.Antonio Gonzalez, Jose A Navas-Molina, Tomasz Kosciolek, Daniel McDonald, Yoshiki Vázquez-Baeza, Gail Ackermann, Jeff DeReus, Stefan Janssen, Austin D Swafford, Stephanie B Orchanian, Jon G Sanders, Joshua Shorenstein, Hannes Holste, Semar Petrus, Adam Robbins-Pianka, Colin J Brislawn, Mingxun Wang, Jai Ram Rideout, Evan Bolyen, Matthew Dillon, J Gregory Caporaso, Pieter C Dorrestein, Rob KnightNature Methods2018-10-01
Microbiome as a therapeutic target in alcohol-related liver disease.Shiv K Sarin, Apurva Pande, Bernd SchnablJournal Of Hepatology2018-09-30
Urinary microbes and postoperative urinary tract infection risk in urogynecologic surgical patients.Krystal J Thomas-White, Xiang Gao, Huaiying Lin, Cynthia S Fok, Kathryn Ghanayem, Elizabeth R Mueller, Qunfeng Dong, Linda Brubaker, Alan J WolfeInternational Urogynecology Journal2018-09-28
Comparison of Oral Collection Methods for Studies of Microbiota.Emily Vogtmann, Jun Chen, Muhammad G Kibriya, Amnon Amir, Jianxin Shi, Yu Chen, Tariqul Islam, Mahbubul Eunes, Alauddin Ahmed, Jabun Naher, Anisur Rahman, Bhaswati Barmon, Rob Knight, Nicholas Chia, Habibul Ahsan, Christian C Abnet, Rashmi SinhaCancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology2018-09-27
Author Correction: Regional variation limits applications of healthy gut microbiome reference ranges and disease models.Yan He, Wei Wu, Hui-Min Zheng, Pan Li, Daniel McDonald, Hua-Fang Sheng, Mu-Xuan Chen, Zi-Hui Chen, Gui-Yuan Ji, Zhong-Dai-Xi Zheng, Prabhakar Mujagond, Xiao-Jiao Chen, Zu-Hua Rong, Peng Chen, Li-Yi Lyu, Xian Wang, Chong-Bin Wu, Nan Yu, Yan-Jun Xu, Jia Yin, Jeroen Raes, Rob Knight, Wen-Jun Ma, Hong-Wei ZhouNature Medicine2018-09-27
ProteoStorm: An Ultrafast Metaproteomics Database Search Framework.Doruk Beyter, Miin S Lin, Yanbao Yu, Rembert Pieper, Vineet BafnaCell Systems2018-09-26
Differences in gut microbiome composition between persons with chronic schizophrenia and healthy comparison subjects.Tanya T Nguyen, Tomasz Kosciolek, Yadira Maldonado, Rebecca E Daly, Averria Sirkin Martin, Daniel McDonald, Rob Knight, Dilip V JesteSchizophrenia Research2018-09-26
Niche partitioning of a pathogenic microbiome driven by chemical gradients.Robert A Quinn, William Comstock, Tianyu Zhang, James T Morton, Ricardo da Silva, Alda Tran, Alexander Aksenov, Louis-Felix Nothias, Daniel Wangpraseurt, Alexey V Melnik, Gail Ackermann, Douglas Conrad, Isaac Klapper, Rob Knight, Pieter C DorresteinScience Advances2018-09-26
Siglec-7 engagement by GBS β-protein suppresses pyroptotic cell death of natural killer cells.Jerry J Fong, Chih-Ming Tsai, Sudeshna Saha, Victor Nizet, Ajit Varki, Jack D BuiProceedings Of The National Academy Of Sciences Of The United States Of America2018-09-25
Enzymatic glucose/oxygen biofuel cells: Use of oxygen-rich cathodes for operation under severe oxygen-deficit conditions.Itthipon Jeerapan, Juliane R Sempionatto, Jung-Min You, Joseph WangBiosensors & Bioelectronics2018-09-19
Evolution of gene knockout strains of E. coli reveal regulatory architectures governed by metabolism.Douglas McCloskey, Sibei Xu, Troy E Sandberg, Elizabeth Brunk, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O PalssonNature Communications2018-09-18
Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians.Celeste Allaband, Daniel McDonald, Yoshiki Vázquez-Baeza, Jeremiah J Minich, Anupriya Tripathi, David A Brenner, Rohit Loomba, Larry Smarr, William J Sandborn, Bernd Schnabl, Pieter Dorrestein, Amir Zarrinpar, Rob KnightClinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association2018-09-18
Multiple Optimal Phenotypes Overcome Redox and Glycolytic Intermediate Metabolite Imbalances in Escherichia coli pgi Knockout Evolutions.Douglas McCloskey, Sibei Xu, Troy E Sandberg, Elizabeth Brunk, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O PalssonApplied And Environmental Microbiology2018-09-17
Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits.Yara Seif, Erol Kavvas, Jean-Christophe Lachance, James T Yurkovich, Sean-Paul Nuccio, Xin Fang, Edward Catoiu, Manuela Raffatellu, Bernhard O Palsson, Jonathan M MonkNature Communications2018-09-14
Changes in the genetic requirements for microbial interactions with increasing community complexity.Manon Morin, Emily C Pierce, Rachel J DuttonELife2018-09-13
Elevated A20 promotes TNF-induced and RIPK1-dependent intestinal epithelial cell death.Ricard Garcia-Carbonell, Jerry Wong, Ju Youn Kim, Lisa Abernathy Close, Brigid S Boland, Thomas L Wong, Philip A Harris, Samuel B Ho, Soumita Das, Peter B Ernst, Roman Sasik, William J Sandborn, John Bertin, Pete J Gough, John T Chang, Michelle Kelliher, David Boone, Monica Guma, Michael KarinProceedings Of The National Academy Of Sciences Of The United States Of America2018-09-12
Gain-of-function experiments with bacteriophage lambda uncover residues under diversifying selection in nature.Rohan Maddamsetti, Daniel T Johnson, Stephanie J Spielman, Katherine L Petrie, Debora S Marks, Justin R MeyerEvolution; International Journal Of Organic Evolution2018-09-11
Complex Network of NKT Cell Subsets Controls Immune Homeostasis in Liver and Gut.Idania Marrero, Igor Maricic, Ariel E Feldstein, Rohit Loomba, Bernd Schnabl, Jesus Rivera-Nieves, Lars Eckmann, Vipin KumarFrontiers In Immunology2018-09-11
Transient and asymptomatic meningitis in human immunodeficiency virus-1 subtype C: a case study of genetic compartmentalization and biomarker dynamics.Sergio M de Almeida, Michelli F Oliveira, Antoine Chaillon, Indianara Rotta, Clea E Ribeiro, Ana Paula de Pereira, Davey Smith, Scott Letendre, Ronald J EllisJournal Of Neurovirology2018-09-07
Emerging Role of the Gut Microbiome in Nonalcoholic Fatty Liver Disease: From Composition to Function.Suzanne R Sharpton, Veeral Ajmera, Rohit LoombaClinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association2018-09-07
Discovery of Half-life of Circulating Hepatitis B Surface Antigen in Patients With Chronic Hepatitis B Infection Using Heavy Water Labeling.Rohit Loomba, Martin Decaris, Kelvin W Li, Mahalakshmi Shankaran, Hussein Mohammed, Marcy Matthews, Lisa M Richards, Phirum Nguyen, Emily Rizo, Barbara Andrews, Robin Soto, Thomas Angel, Vithika Suri, Kathryn M Kitrinos, Dwight Barnes, Gregg Czerwieniec, Kathy Brendza, G Mani Subramanian, Anuj Gaggar, Marc K HellersteinClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2018-09-06
Advances in metabolic modeling of oleaginous microalgae.Juan D Tibocha-Bonilla, Cristal Zuñiga, Rubén D Godoy-Silva, Karsten ZenglerBiotechnology For Biofuels2018-09-05
The nonlesional skin surface distinguishes atopic dermatitis with food allergy as a unique endotype.Donald Y M Leung, Agustin Calatroni, Livia S Zaramela, Petra K LeBeau, Nathan Dyjack, Kanwaljit Brar, Gloria David, Keli Johnson, Susan Leung, Marco Ramirez-Gama, Bo Liang, Cydney Rios, Michael T Montgomery, Brittany N Richers, Clifton F Hall, Kathryn A Norquest, John Jung, Irina Bronova, Simion Kreimer, C Conover Talbot, Debra Crumrine, Robert N Cole, Peter Elias, Karsten Zengler, Max A Seibold, Evgeny Berdyshev, Elena GolevaScience Translational Medicine2018-08-31
Microbial effects of livestock manure fertilization on freshwater aquaculture ponds rearing tilapia (Oreochromis shiranus) and North African catfish (Clarias gariepinus).Jeremiah J Minich, Qiyun Zhu, Zhenjiang Zech Xu, Amnon Amir, Maxon Ngochera, Moses Simwaka, Eric E Allen, Hastings Zidana, Rob KnightMicrobiologyOpen2018-08-31
Gut microbiome, microbial metabolites and the development of NAFLD.Cyrielle Caussy, Rohit LoombaNature Reviews. Gastroenterology & Hepatology2018-08-31
Small metabolites, possible big changes: a microbiota-centered view of non-alcoholic fatty liver disease.Huikuan Chu, Yi Duan, Ling Yang, Bernd SchnablGut2018-08-31
Pharmacokinetics and Safety of Single Intravenous Doses of Ceftolozane/Tazobactam in Children With Proven or Suspected Gram-Negative Infection.John S Bradley, Jocelyn Y Ang, Antonio C Arrieta, Kajal B Larson, Matthew L Rizk, Luzelena Caro, Shan Yang, Brian Yu, Matthew G Johnson, Elizabeth G RheeThe Pediatric Infectious Disease Journal2018-08-29
Pumilacidins from the Octocoral-Associated sp. DT001 Display Anti-Proliferative Effects in .Daniel Torres-Mendoza, Lorena M Coronado, Laura M Pineda, Héctor M Guzmán, Pieter C Dorrestein, Carmenza Spadafora, Marcelino GutiérrezMolecules (Basel, Switzerland)2018-08-29
Reply.Aileen Y Chang, Jeffrey M Bethony, Gary L Simon, Liliana Encinales, Gary S FiresteinArthritis & Rheumatology (Hoboken, N.J.)2018-08-27
TCF1 and LEF1 Control Treg Competitive Survival and Tfr Development to Prevent Autoimmune Diseases.Bi-Huei Yang, Ke Wang, Shuo Wan, Yan Liang, Xiaomei Yuan, Yi Dong, Sunglim Cho, Wanqing Xu, Kristen Jepsen, Gen-Sheng Feng, Li-Fan Lu, Hai-Hui Xue, Wenxian FuCell Reports2018-08-27
Regional variation limits applications of healthy gut microbiome reference ranges and disease models.Yan He, Wei Wu, Hui-Min Zheng, Pan Li, Daniel McDonald, Hua-Fang Sheng, Mu-Xuan Chen, Zi-Hui Chen, Gui-Yuan Ji, Zhong-Dai-Xi Zheng, Prabhakar Mujagond, Xiao-Jiao Chen, Zu-Hua Rong, Peng Chen, Li-Yi Lyu, Xian Wang, Chong-Bin Wu, Nan Yu, Yan-Jun Xu, Jia Yin, Jeroen Raes, Rob Knight, Wen-Jun Ma, Hong-Wei ZhouNature Medicine2018-08-27
A Commensal Dipeptidyl Aminopeptidase with Specificity for N-Terminal Glycine Degrades Human-Produced Antimicrobial Peptides in Vitro.Janice H Xu, Zhenze Jiang, Angelo Solania, Sandip Chatterjee, Brian Suzuki, Christopher B Lietz, Vivian Y H Hook, Anthony J O'Donoghue, Dennis W WolanACS Chemical Biology2018-08-23
Bistable emergence of oscillations in growing biofilms.Rosa Martinez-Corral, Jintao Liu, Gürol M Süel, Jordi Garcia-OjalvoProceedings Of The National Academy Of Sciences Of The United States Of America2018-08-20
Integration of Genomic Data with NMR Analysis Enables Assignment of the Full Stereostructure of Neaumycin B, a Potent Inhibitor of Glioblastoma from a Marine-Derived Micromonospora.Min Cheol Kim, Henrique Machado, Kyoung Hwa Jang, Lynnie Trzoss, Paul R Jensen, William FenicalJournal Of The American Chemical Society2018-08-20
Links between environment, diet, and the hunter-gatherer microbiome.Gabriela K Fragiadakis, Samuel A Smits, Erica D Sonnenburg, William Van Treuren, Gregor Reid, Rob Knight, Alphaxard Manjurano, John Changalucha, Maria Gloria Dominguez-Bello, Jeff Leach, Justin L SonnenburgGut Microbes2018-08-17
Urinary symptoms are associated with certain urinary microbes in urogynecologic surgical patients.Cynthia S Fok, Xiang Gao, Huaiying Lin, Krystal J Thomas-White, Elizabeth R Mueller, Alan J Wolfe, Qunfeng Dong, Linda BrubakerInternational Urogynecology Journal2018-08-16
Leaky resistance and the conditions for the existence of lytic bacteriophage.Waqas N Chaudhry, Maroš Pleška, Nilang N Shah, Howard Weiss, Ingrid C McCall, Justin R Meyer, Animesh Gupta, Călin C Guet, Bruce R LevinPLoS Biology2018-08-16
A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0.Alberto Santos-Zavaleta, Mishael Sánchez-Pérez, Heladia Salgado, David A Velázquez-Ramírez, Socorro Gama-Castro, Víctor H Tierrafría, Stephen J W Busby, Patricia Aquino, Xin Fang, Bernhard O Palsson, James E Galagan, Julio Collado-VidesBMC Biology2018-08-16
Distinctive Archaeal Composition of an Artisanal Crystallizer Pond and Functional Insights Into Salt-Saturated Hypersaline Environment Adaptation.Alvaro M Plominsky, Carlos Henríquez-Castillo, Nathalie Delherbe, Sheila Podell, Salvador Ramirez-Flandes, Juan A Ugalde, Juan F Santibañez, Ger van den Engh, Kurt Hanselmann, Osvaldo Ulloa, Rodrigo De la Iglesia, Eric E Allen, Nicole TrefaultFrontiers In Microbiology2018-08-14
True Versus False Bacteremia in Infants and Children Less Than 3 Years of Age.Elizabeth Mannino Avila, Erin Stucky Fisher, Kyung RheePediatric Emergency Care2018-08-13
Engineering Salinispora tropica for heterologous expression of natural product biosynthetic gene clusters.Jia Jia Zhang, Bradley S Moore, Xiaoyu TangApplied Microbiology And Biotechnology2018-08-13
Percentage of ingested sodium excreted in 24-hour urine collections: A systematic review and meta-analysis.Aaron M Lucko, Chelsea Doktorchik, Mark Woodward, Mary Cogswell, Bruce Neal, Doreen Rabi, Cheryl Anderson, Feng J He, Graham A MacGregor, Mary L'Abbe, JoAnne Arcand, Paul K Whelton, Rachael McLean, Norm R C Campbell, Journal Of Clinical Hypertension (Greenwich, Conn.)2018-08-12
Influenza Vaccination Can Broadly Activate the HIV Reservoir During Antiretroviral Therapy.Aaron Christensen-Quick, Antoine Chaillon, Christina Yek, Fabio Zanini, Parris Jordan, Caroline Ignacio, Gemma Caballero, Sara Gianella, Davey SmithJournal Of Acquired Immune Deficiency Syndromes (1999)2018-08-08
Learning from bacterial competition in the host to develop antimicrobials.Manuela RaffatelluNature Medicine2018-08-06
Cell-Like Micromotors.Berta Esteban-Fernández de Ávila, Weiwei Gao, Emil Karshalev, Liangfang Zhang, Joseph WangAccounts Of Chemical Research2018-08-03
Twisted Tales: Insights into Genome Diversity of Ciliates Using Single-Cell 'Omics.Xyrus X Maurer-Alcalá, Ying Yan, Olivia A Pilling, Rob Knight, Laura A KatzGenome Biology And Evolution2018-08-01
Roles for ClpXP in regulating the circadian clock in .Susan E Cohen, Briana M McKnight, Susan S GoldenProceedings Of The National Academy Of Sciences Of The United States Of America2018-07-30
Are microbiome studies ready for hypothesis-driven research?Anupriya Tripathi, Clarisse Marotz, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Se Jin Song, Amina Bouslimani, Daniel McDonald, Qiyun Zhu, Jon G Sanders, Larry Smarr, Pieter C Dorrestein, Rob KnightCurrent Opinion In Microbiology2018-07-27
Signal Percolation within a Bacterial Community.Joseph W Larkin, Xiaoling Zhai, Kaito Kikuchi, Samuel E Redford, Arthur Prindle, Jintao Liu, Sacha Greenfield, Aleksandra M Walczak, Jordi Garcia-Ojalvo, Andrew Mugler, Gürol M SüelCell Systems2018-07-25
Joint Analysis of Long and Short Reads Enables Accurate Estimates of Microbiome Complexity.Anton Bankevich, Pavel A PevznerCell Systems2018-07-25
New mitochondrial DNA synthesis enables NLRP3 inflammasome activation.Zhenyu Zhong, Shuang Liang, Elsa Sanchez-Lopez, Feng He, Shabnam Shalapour, Xue-Jia Lin, Jerry Wong, Siyuan Ding, Ekihiro Seki, Bernd Schnabl, Andrea L Hevener, Harry B Greenberg, Tatiana Kisseleva, Michael KarinNature2018-07-25
The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight.Francine E Garrett-Bakelman, Manjula Darshi, Stefan J Green, Ruben C Gur, Ling Lin, Brandon R Macias, Miles J McKenna, Cem Meydan, Tejaswini Mishra, Jad Nasrini, Brian D Piening, Lindsay F Rizzardi, Kumar Sharma, Jamila H Siamwala, Lynn Taylor, Martha Hotz Vitaterna, Maryam Afkarian, Ebrahim Afshinnekoo, Sara Ahadi, Aditya Ambati, Maneesh Arya, Daniela Bezdan, Colin M Callahan, Songjie Chen, Augustine M K Choi, George E Chlipala, Kévin Contrepois, Marisa Covington, Brian E Crucian, Immaculata De Vivo, David F Dinges, Douglas J Ebert, Jason I Feinberg, Jorge A Gandara, Kerry A George, John Goutsias, George S Grills, Alan R Hargens, Martina Heer, Ryan P Hillary, Andrew N Hoofnagle, Vivian Y H Hook, Garrett Jenkinson, Peng Jiang, Ali Keshavarzian, Steven S Laurie, Brittany Lee-McMullen, Sarah B Lumpkins, Matthew MacKay, Mark G Maienschein-Cline, Ari M Melnick, Tyler M Moore, Kiichi Nakahira, Hemal H Patel, Robert Pietrzyk, Varsha Rao, Rintaro Saito, Denis N Salins, Jan M Schilling, Dorothy D Sears, Caroline K Sheridan, Michael B Stenger, Rakel Tryggvadottir, Alexander E Urban, Tomas Vaisar, Benjamin Van Espen, Jing Zhang, Michael G Ziegler, Sara R Zwart, John B Charles, Craig E Kundrot, Graham B I Scott, Susan M Bailey, Mathias Basner, Andrew P Feinberg, Stuart M C Lee, Christopher E Mason, Emmanuel Mignot, Brinda K Rana, Scott M Smith, Michael P Snyder, Fred W TurekScience (New York, N.Y.)2018-07-24
Willingness to participate in HIV research at the end of life (EOL).Katya Prakash, Sara Gianella, Karine Dubé, Jeff Taylor, GaYoung Lee, Davey M SmithPloS One2018-07-23
A Novel Sialylation Site on Neisseria gonorrhoeae Lipooligosaccharide Links Heptose II Lactose Expression with Pathogenicity.Sanjay Ram, Sunita Gulati, Lisa A Lewis, Srinjoy Chakraborti, Bo Zheng, Rosane B DeOliveira, George W Reed, Andrew D Cox, Jianjun Li, Frank St Michael, Jacek Stupak, Xiao-Hong Su, Sudeshna Saha, Corinna S Landig, Ajit Varki, Peter A RiceInfection And Immunity2018-07-23
Skin commensal bacteria Staphylococcus epidermidis promote survival of melanocytes bearing UVB-induced DNA damage, while bacteria Propionibacterium acnes inhibit survival of melanocytes by increasing apoptosis.Zhenping Wang, Jae-Eun Choi, Chia-Chi Wu, Anna Di NardoPhotodermatology, Photoimmunology & Photomedicine2018-07-23
Development of a cyanobacterial heterologous polyketide production platform.Julia Roulet, Arnaud Taton, James W Golden, Ana Arabolaza, Michael D Burkart, Hugo GramajoMetabolic Engineering2018-07-21
Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism.Amir Zarrinpar, Amandine Chaix, Zhenjiang Z Xu, Max W Chang, Clarisse A Marotz, Alan Saghatelian, Rob Knight, Satchidananda PandaNature Communications2018-07-20
Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota.Zheng-Shuang Hua, Yan-Ni Qu, Qiyun Zhu, En-Min Zhou, Yan-Ling Qi, Yi-Rui Yin, Yang-Zhi Rao, Ye Tian, Yu-Xian Li, Lan Liu, Cindy J Castelle, Brian P Hedlund, Wen-Sheng Shu, Rob Knight, Wen-Jun LiNature Communications2018-07-19
Need for Laboratory Ecosystems To Unravel the Structures and Functions of Soil Microbial Communities Mediated by Chemistry.Kateryna Zhalnina, Karsten Zengler, Dianne Newman, Trent R NorthenMBio2018-07-17
Differential cell-intrinsic regulations of germinal center B and T cells by miR-146a and miR-146b.Sunglim Cho, Hyang-Mi Lee, I-Shing Yu, Youn Soo Choi, Hsi-Yuan Huang, Somaye Sadat Hashemifar, Ling-Li Lin, Mei-Chi Chen, Nikita D Afanasiev, Aly Azeem Khan, Shu-Wha Lin, Alexander Y Rudensky, Shane Crotty, Li-Fan LuNature Communications2018-07-16
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes.Katherine R Amato, Jon G Sanders, Se Jin Song, Michael Nute, Jessica L Metcalf, Luke R Thompson, James T Morton, Amnon Amir, Valerie J McKenzie, Gregory Humphrey, Grant Gogul, James Gaffney, Andrea L Baden, Gillian A O Britton, Frank P Cuozzo, Anthony Di Fiore, Nathaniel J Dominy, Tony L Goldberg, Andres Gomez, Martin M Kowalewski, Rebecca J Lewis, Andres Link, Michelle L Sauther, Stacey Tecot, Bryan A White, Karen E Nelson, Rebecca M Stumpf, Rob Knight, Steven R LeighThe ISME Journal2018-07-11
Genome-wide fitness assessment during diurnal growth reveals an expanded role of the cyanobacterial circadian clock protein KaiA.David G Welkie, Benjamin E Rubin, Yong-Gang Chang, Spencer Diamond, Scott A Rifkin, Andy LiWang, Susan S GoldenProceedings Of The National Academy Of Sciences Of The United States Of America2018-07-10
Environmental radiation alters the gut microbiome of the bank vole Myodes glareolus.Anton Lavrinienko, Tapio Mappes, Eugene Tukalenko, Timothy A Mousseau, Anders P Møller, Rob Knight, James T Morton, Luke R Thompson, Phillip C WattsThe ISME Journal2018-07-09
Composition and Variation of the Human Milk Microbiota Are Influenced by Maternal and Early-Life Factors.Shirin Moossavi, Shadi Sepehri, Bianca Robertson, Lars Bode, Sue Goruk, Catherine J Field, Lisa M Lix, Russell J de Souza, Allan B Becker, Piushkumar J Mandhane, Stuart E Turvey, Padmaja Subbarao, Theo J Moraes, Diana L Lefebvre, Malcolm R Sears, Ehsan Khafipour, Meghan B AzadCell Host & Microbe2018-07-08
Author Correction: Inflammation-induced IgA cells dismantle anti-liver cancer immunity.Shabnam Shalapour, Xue-Jia Lin, Ingmar N Bastian, John Brain, Alastair D Burt, Alexander A Aksenov, Alison F Vrbanac, Weihua Li, Andres Perkins, Takaji Matsutani, Zhenyu Zhong, Debanjan Dhar, Jose A Navas-Molina, Jun Xu, Rohit Loomba, Michael Downes, Ruth T Yu, Ronald M Evans, Pieter C Dorrestein, Rob Knight, Christopher Benner, Quentin M Anstee, Michael KarinNature2018-07-06
1α,25-dihydroxyvitamin D-eluting nanofibrous dressings induce endogenous antimicrobial peptide expression.Jiang Jiang, Yang Zhang, Arup K Indra, Gitali Ganguli-Indra, Mai N Le, Hongjun Wang, Ronald R Hollins, Debra A Reilly, Mark A Carlson, Richard L Gallo, Adrian F Gombart, Jingwei XieNanomedicine (London, England)2018-07-04
Immunological Effects of Human Milk Oligosaccharides.Vassilis Triantis, Lars Bode, R J Joost van NeervenFrontiers In Pediatrics2018-07-02
The Anti-Inflammatory Activities of Propionibacterium acnes CAMP Factor-Targeted Acne Vaccines.Yanhan Wang, Tissa R Hata, Yun Larry Tong, Ming-Shan Kao, Christos C Zouboulis, Richard L Gallo, Chun-Ming HuangThe Journal Of Investigative Dermatology2018-06-30
The Control of HIV After Antiretroviral Medication Pause (CHAMP) Study: Posttreatment Controllers Identified From 14 Clinical Studies.Golnaz Namazi, Jesse M Fajnzylber, Evgenia Aga, Ronald J Bosch, Edward P Acosta, Radwa Sharaf, Wendy Hartogensis, Jeffrey M Jacobson, Elizabeth Connick, Paul Volberding, Daniel Skiest, David Margolis, Michael C Sneller, Susan J Little, Sara Gianella, Davey M Smith, Daniel R Kuritzkes, Roy M Gulick, John W Mellors, Vikram Mehraj, Rajesh T Gandhi, Ronald Mitsuyasu, Robert T Schooley, Keith Henry, Pablo Tebas, Steven G Deeks, Tae-Wook Chun, Ann C Collier, Jean-Pierre Routy, Frederick M Hecht, Bruce D Walker, Jonathan Z LiThe Journal Of Infectious Diseases2018-06-29
Ancient Diet: Gut Microbiota, Immunity, and Health.Kaitlyn Shondelmyer, Rob Knight, Anusha Sanivarapu, Shuji Ogino, Jairam K P VanamalaThe Yale Journal Of Biology And Medicine2018-06-28
Large-scale replicated field study of maize rhizosphere identifies heritable microbes.William A Walters, Zhao Jin, Nicholas Youngblut, Jason G Wallace, Jessica Sutter, Wei Zhang, Antonio González-Peña, Jason Peiffer, Omry Koren, Qiaojuan Shi, Rob Knight, Tijana Glavina Del Rio, Susannah G Tringe, Edward S Buckler, Jeffery L Dangl, Ruth E LeyProceedings Of The National Academy Of Sciences Of The United States Of America2018-06-25
Experimental Infection of by the Group II Intermediate Pathogen, .Carla Fernandez, Aristea A Lubar, Joseph M Vinetz, Michael A MatthiasThe American Journal Of Tropical Medicine And Hygiene2018-06-21
Genomic Comparison Among Global Isolates of Serovars Copenhageni and Icterohaemorrhagiae Identified Natural Genetic Variation Caused by an Indel.Luciane A Santos, Haritha Adhikarla, Xiting Yan, Zheng Wang, Derrick E Fouts, Joseph M Vinetz, Luiz C J Alcantara, Rudy A Hartskeerl, Marga G A Goris, Mathieu Picardeau, Mitermayer G Reis, Jeffrey P Townsend, Hongyu Zhao, Albert I Ko, Elsio A WunderFrontiers In Cellular And Infection Microbiology2018-06-19
Accelerated Aging and Clearance of Host Anti-inflammatory Enzymes by Discrete Pathogens Fuels Sepsis.Won Ho Yang, Douglas M Heithoff, Peter V Aziz, Benjamin Haslund-Gourley, Julia S Westman, Sonoko Narisawa, Anthony B Pinkerton, José Luis Millán, Victor Nizet, Michael J Mahan, Jamey D MarthCell Host & Microbe2018-06-18
Human evolutionary loss of epithelial Neu5Gc expression and species-specific susceptibility to cholera.Frederico Alisson-Silva, Janet Z Liu, Sandra L Diaz, Lingquan Deng, Mélanie G Gareau, Ronald Marchelletta, Xi Chen, Victor Nizet, Nissi Varki, Kim E Barrett, Ajit VarkiPLoS Pathogens2018-06-18
The urinary microbiome in women with mixed urinary incontinence compared to similarly aged controls.Yuko M Komesu, Holly E Richter, Benjamin Carper, Darrell L Dinwiddie, Emily S Lukacz, Nazema Y Siddiqui, Vivian W Sung, Halina M Zyczynski, Beri Ridgeway, Rebecca G Rogers, Lily A Arya, Donna Mazloomdoost, Marie G Gantz, International Urogynecology Journal2018-06-16
FAVITES: simultaneous simulation of transmission networks, phylogenetic trees and sequences.Niema Moshiri, Manon Ragonnet-Cronin, Joel O Wertheim, Siavash MirarabBioinformatics (Oxford, England)2018-06-15
Adaptive laboratory evolution resolves energy depletion to maintain high aromatic metabolite phenotypes in Escherichia coli strains lacking the Phosphotransferase System.Douglas McCloskey, Sibei Xu, Troy E Sandberg, Elizabeth Brunk, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O PalssonMetabolic Engineering2018-06-15
Temporal dynamics of eukaryotic microbial diversity at a coastal Pacific site.Maitreyi Nagarkar, Peter D Countway, Yeong Du Yoo, Emy Daniels, Nicole J Poulton, Brian PalenikThe ISME Journal2018-06-13
ALEdb 1.0: a database of mutations from adaptive laboratory evolution experimentation.Patrick V Phaneuf, Dennis Gosting, Bernhard O Palsson, Adam M FeistNucleic Acids Research2018-06-12
Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa.Xin Fang, Jonathan M Monk, Nathan Mih, Bin Du, Anand V Sastry, Erol Kavvas, Yara Seif, Larry Smarr, Bernhard O PalssonBMC Systems Biology2018-06-11
Bacterioplankton drawdown of coral mass-spawned organic matter.Ryan Guillemette, Ryo Kaneko, Jessica Blanton, Jasmine Tan, Matthias Witt, Samantha Hamilton, Eric E Allen, Mónica Medina, Koji Hamasaki, Boris P Koch, Farooq AzamThe ISME Journal2018-06-08
Finger-Based Printed Sensors Integrated on a Glove for On-Site Screening Of Pseudomonas aeruginosa Virulence Factors.Bianca Ciui, Mihaela Tertiş, Andreea Cernat, Robert Săndulescu, Joseph Wang, Cecilia CristeaAnalytical Chemistry2018-06-08
The role of inter-species interactions in Salinispora specialized metabolism.Nastassia V Patin, Dimitrios J Floros, Chambers C Hughes, Pieter C Dorrestein, Paul R JensenMicrobiology (Reading, England)2018-06-07
Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome.Anupriya Tripathi, Alexey V Melnik, Jin Xue, Orit Poulsen, Michael J Meehan, Gregory Humphrey, Lingjing Jiang, Gail Ackermann, Daniel McDonald, Dan Zhou, Rob Knight, Pieter C Dorrestein, Gabriel G HaddadMSystems2018-06-05
Recurrent group A tonsillitis is an immunosusceptibility disease involving antibody deficiency and aberrant T cells.Jennifer M Dan, Colin Havenar-Daughton, Kayla Kendric, Rita Al-Kolla, Kirti Kaushik, Sandy L Rosales, Ericka L Anderson, Christopher N LaRock, Pandurangan Vijayanand, Grégory Seumois, David Layfield, Ramsey I Cutress, Christian H Ottensmeier, Cecilia S Lindestam Arlehamn, Alessandro Sette, Victor Nizet, Marcella Bothwell, Matthew Brigger, Shane CrottyScience Translational Medicine2018-06-04
Ethanolamine ameliorates mitochondrial dysfunction in cardiolipin-deficient yeast cells.Writoban Basu Ball, Charli D Baker, John K Neff, Gabriel L Apfel, Kim A Lagerborg, Gašper Žun, Uroš Petrovič, Mohit Jain, Vishal M GohilThe Journal Of Biological Chemistry2018-06-04
The gut microbiome of nonhuman primates: Lessons in ecology and evolution.Jonathan B Clayton, Andres Gomez, Katherine Amato, Dan Knights, Dominic A Travis, Ran Blekhman, Rob Knight, Steven Leigh, Rebecca Stumpf, Tiffany Wolf, Kenneth E Glander, Francis Cabana, Timothy J JohnsonAmerican Journal Of Primatology2018-06-04
Developmental regulation of kidney and liver solute carrier and ATP-binding cassette drug transporters and drug metabolizing enzymes: the role of remote organ communication.Jeremiah D Momper, Sanjay K NigamExpert Opinion On Drug Metabolism & Toxicology2018-06-04
New insights into the pathogenesis and treatment of non-viral hepatocellular carcinoma: a balancing act between immunosuppression and immunosurveillance.Michael KarinPrecision Clinical Medicine2018-06-04
Gut microbiome and magnetic resonance spectroscopy study of subjects at ultra-high risk for psychosis may support the membrane hypothesis.Ying He, Tomasz Kosciolek, Jinsong Tang, Yao Zhou, Zongchang Li, Xiaoqian Ma, Qiyun Zhu, Ning Yuan, Liu Yuan, Chunwang Li, Ke Jin, Rob Knight, Ming T Tsuang, Xiaogang ChenEuropean Psychiatry : The Journal Of The Association Of European Psychiatrists2018-06-02
Shared and Distinct Features of Human Milk and Infant Stool Viromes.Pia S Pannaraj, Melissa Ly, Chiara Cerini, Monica Saavedra, Grace M Aldrovandi, Abdul A Saboory, Kevin M Johnson, David T PrideFrontiers In Microbiology2018-06-01
The systems biology of uric acid transporters: the role of remote sensing and signaling.Sanjay K Nigam, Vibha BhatnagarCurrent Opinion In Nephrology And Hypertension2018-05-31
Whole blood transcriptional profiles as a prognostic tool in complete and incomplete Kawasaki Disease.Preeti Jaggi, Asuncion Mejias, Zhaohui Xu, Han Yin, Melissa Moore-Clingenpeel, Bennett Smith, Jane C Burns, Adriana H Tremoulet, Alejandro Jordan-Villegas, Damien Chaussabel, Karen Texter, Virginia Pascual, Octavio RamiloPloS One2018-05-29
Best practices for analysing microbiomes.Rob Knight, Alison Vrbanac, Bryn C Taylor, Alexander Aksenov, Chris Callewaert, Justine Debelius, Antonio Gonzalez, Tomasz Kosciolek, Laura-Isobel McCall, Daniel McDonald, Alexey V Melnik, James T Morton, Jose Navas, Robert A Quinn, Jon G Sanders, Austin D Swafford, Luke R Thompson, Anupriya Tripathi, Zhenjiang Z Xu, Jesse R Zaneveld, Qiyun Zhu, J Gregory Caporaso, Pieter C DorresteinNature Reviews. Microbiology2018-05-26
Decontaminating surfaces with atomized disinfectants generated by a novel thickness-mode lithium niobate device.Monika Kumaraswamy, Sean Collignon, Carter Do, Janie Kim, Victor Nizet, James FriendApplied Microbiology And Biotechnology2018-05-26
Adaptation to the coupling of glycolysis to toxic methylglyoxal production in tpiA deletion strains of Escherichia coli requires synchronized and counterintuitive genetic changes.Douglas McCloskey, Sibei Xu, Troy E Sandberg, Elizabeth Brunk, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O PalssonMetabolic Engineering2018-05-26
The Two-Component System AgrAC Displays Four Distinct Genomic Arrangements That Delineate Genomic Virulence Factor Signatures.Kumari S Choudhary, Nathan Mih, Jonathan Monk, Erol Kavvas, James T Yurkovich, George Sakoulas, Bernhard O PalssonFrontiers In Microbiology2018-05-25
Methods for phylogenetic analysis of microbiome data.Alex D Washburne, James T Morton, Jon Sanders, Daniel McDonald, Qiyun Zhu, Angela M Oliverio, Rob KnightNature Microbiology2018-05-24
SHMT2 and the BRCC36/BRISC deubiquitinase regulate HIV-1 Tat K63-ubiquitylation and destruction by autophagy.Muyu Xu, James J Moresco, Max Chang, Amey Mukim, Davey Smith, Jolene K Diedrich, John R Yates, Katherine A JonesPLoS Pathogens2018-05-23
Corrigendum: The Effect of Hydrostatic Pressure on Enrichments of Hydrocarbon Degrading Microbes From the Gulf of Mexico Following the Deepwater Horizon Oil Spill.Angeliki Marietou, Roger Chastain, Felix Beulig, Alberto Scoma, Terry C Hazen, Douglas H BartlettFrontiers In Microbiology2018-05-23
Publisher Correction: The gut-liver axis and the intersection with the microbiome.Anupriya Tripathi, Justine Debelius, David A Brenner, Michael Karin, Rohit Loomba, Bernd Schnabl, Rob KnightNature Reviews. Gastroenterology & Hepatology2018-05-23
Preface.Bradley S MooreMethods In Enzymology2018-05-22
Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm.Jennifer M Michaud, Luke R Thompson, Drishti Kaul, Josh L Espinoza, R Alexander Richter, Zhenjiang Zech Xu, Christopher Lee, Kevin M Pham, Charlotte M Beall, Francesca Malfatti, Farooq Azam, Rob Knight, Michael D Burkart, Christopher L Dupont, Kimberly A PratherNature Communications2018-05-22
Link between gut-microbiome derived metabolite and shared gene-effects with hepatic steatosis and fibrosis in NAFLD.Cyrielle Caussy, Cynthia Hsu, Min-Tzu Lo, Amy Liu, Ricki Bettencourt, Veeral H Ajmera, Shirin Bassirian, Jonathan Hooker, Ethan Sy, Lisa Richards, Nicholas Schork, Bernd Schnabl, David A Brenner, Claude B Sirlin, Chi-Hua Chen, Rohit Loomba, Hepatology (Baltimore, Md.)2018-05-20
An internally quenched peptide as a new model substrate for rhomboid intramembrane proteases.Elena Arutyunova, Zhenze Jiang, Jian Yang, Ayodeji N Kulepa, Howard S Young, Steven Verhelst, Anthony J O'Donoghue, M Joanne LemieuxBiological Chemistry2018-05-17
A Worm's Gut Feelings: Neuronal Muscarinic and Epithelial Canonical Wnt Pathways Promote Antimicrobial Defense.Romana R Gerner, Manuela RaffatelluImmunity2018-05-17
Group A M1T1 Intracellular Infection of Primary Tonsil Epithelial Cells Dampens Levels of Secreted IL-8 Through the Action of SpyCEP.Amelia T Soderholm, Timothy C Barnett, Othmar Korn, Tania Rivera-Hernandez, Lisa M Seymour, Benjamin L Schulz, Victor Nizet, Christine A Wells, Matthew J Sweet, Mark J WalkerFrontiers In Cellular And Infection Microbiology2018-05-17
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin.Nicholas A Bokulich, Benjamin D Kaehler, Jai Ram Rideout, Matthew Dillon, Evan Bolyen, Rob Knight, Gavin A Huttley, J Gregory CaporasoMicrobiome2018-05-17
ChIP-exo interrogation of Crp, DNA, and RNAP holoenzyme interactions.Haythem Latif, Stephen Federowicz, Ali Ebrahim, Janna Tarasova, Richard Szubin, Jose Utrilla, Karsten Zengler, Bernhard O PalssonPloS One2018-05-17
Defining Host Responses during Systemic Bacterial Infection through Construction of a Murine Organ Proteome Atlas.John D Lapek, Robert H Mills, Jacob M Wozniak, Anaamika Campeau, Ronnie H Fang, Xiaoli Wei, Kirsten van de Groep, Araceli Perez-Lopez, Nina M van Sorge, Manuela Raffatellu, Rob Knight, Liangfang Zhang, David J GonzalezCell Systems2018-05-16
Dot1 promotes H2B ubiquitination by a methyltransferase-independent mechanism.Tibor van Welsem, Tessy Korthout, Reggy Ekkebus, Dominique Morais, Thom M Molenaar, Kirsten van Harten, Deepani W Poramba-Liyanage, Su Ming Sun, Tineke L Lenstra, Rohith Srivas, Trey Ideker, Frank C P Holstege, Haico van Attikum, Farid El Oualid, Huib Ovaa, Iris J E Stulemeijer, Hanneke Vlaming, Fred van LeeuwenNucleic Acids Research2018-05-16
American Gut: an Open Platform for Citizen Science Microbiome Research.Daniel McDonald, Embriette Hyde, Justine W Debelius, James T Morton, Antonio Gonzalez, Gail Ackermann, Alexander A Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen, Lindsay DeRight Goldasich, Pieter C Dorrestein, Robert R Dunn, Ashkaan K Fahimipour, James Gaffney, Jack A Gilbert, Grant Gogul, Jessica L Green, Philip Hugenholtz, Greg Humphrey, Curtis Huttenhower, Matthew A Jackson, Stefan Janssen, Dilip V Jeste, Lingjing Jiang, Scott T Kelley, Dan Knights, Tomasz Kosciolek, Joshua Ladau, Jeff Leach, Clarisse Marotz, Dmitry Meleshko, Alexey V Melnik, Jessica L Metcalf, Hosein Mohimani, Emmanuel Montassier, Jose Navas-Molina, Tanya T Nguyen, Shyamal Peddada, Pavel Pevzner, Katherine S Pollard, Gholamali Rahnavard, Adam Robbins-Pianka, Naseer Sangwan, Joshua Shorenstein, Larry Smarr, Se Jin Song, Timothy Spector, Austin D Swafford, Varykina G Thackray, Luke R Thompson, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Alison Vrbanac, Paul Wischmeyer, Elaine Wolfe, Qiyun Zhu, , Rob KnightMSystems2018-05-15
The gut-liver axis and the intersection with the microbiome.Anupriya Tripathi, Justine Debelius, David A Brenner, Michael Karin, Rohit Loomba, Bernd Schnabl, Rob KnightNature Reviews. Gastroenterology & Hepatology2018-05-12
Viral Capsid Trafficking along Treadmilling Tubulin Filaments in Bacteria.Vorrapon Chaikeeratisak, Kanika Khanna, Katrina T Nguyen, Joseph Sugie, MacKennon E Egan, Marcella L Erb, Anastasia Vavilina, Poochit Nonejuie, Eliza Nieweglowska, Kit Pogliano, David A Agard, Elizabeth Villa, Joe PoglianoCell2018-05-11
Antiviral treatment of childhood influenza: an update.Amaran Moodley, John S Bradley, David W KimberlinCurrent Opinion In Pediatrics2018-05-11
Coating nanoparticles with gastric epithelial cell membrane for targeted antibiotic delivery against infection.Pavimol Angsantikul, Soracha Thamphiwatana, Qiangzhe Zhang, Kevin Spiekermann, Jia Zhuang, Ronnie H Fang, Weiwei Gao, Marygorret Obonyo, Liangfang ZhangAdvanced Therapeutics2018-05-08
Biosynthesis of t-Butyl in Apratoxin A: Functional Analysis and Architecture of a PKS Loading Module.Meredith A Skiba, Andrew P Sikkema, Nathan A Moss, Andrew N Lowell, Min Su, Rebecca M Sturgis, Lena Gerwick, William H Gerwick, David H Sherman, Janet L SmithACS Chemical Biology2018-05-08
Characterization of PdCP1, a serine carboxypeptidase from Pseudogymnoascus destructans, the causal agent of White-nose Syndrome.Chapman Beekman, Zhenze Jiang, Brian M Suzuki, Jonathan M Palmer, Daniel L Lindner, Anthony J O'Donoghue, Giselle M Knudsen, Richard J BennettBiological Chemistry2018-05-01
Collection, Culturing, and Genome Analyses of Tropical Marine Filamentous Benthic Cyanobacteria.Nathan A Moss, Tiago Leao, Evgenia Glukhov, Lena Gerwick, William H GerwickMethods In Enzymology2018-04-27
Exposure to toxic metals triggers unique responses from the rat gut microbiota.Joshua B Richardson, Blair C R Dancy, Cassandra L Horton, Young S Lee, Michael S Madejczyk, Zhenjiang Zech Xu, Gail Ackermann, Gregory Humphrey, Gustavo Palacios, Rob Knight, John A LewisScientific Reports2018-04-26
The Effect of Hydrostatic Pressure on Enrichments of Hydrocarbon Degrading Microbes From the Gulf of Mexico Following the Deepwater Horizon Oil Spill.Angeliki Marietou, Roger Chastain, Felix Beulig, Alberto Scoma, Terry C Hazen, Douglas H BartlettFrontiers In Microbiology2018-04-26
Human Milk Oligosaccharide Concentrations Are Associated with Multiple Fixed and Modifiable Maternal Characteristics, Environmental Factors, and Feeding Practices.Meghan B Azad, Bianca Robertson, Faisal Atakora, Allan B Becker, Padmaja Subbarao, Theo J Moraes, Piushkumar J Mandhane, Stuart E Turvey, Diana L Lefebvre, Malcolm R Sears, Lars BodeThe Journal Of Nutrition2018-04-25
In Situ Gene Therapy via AAV-CRISPR-Cas9-Mediated Targeted Gene Regulation.Ana M Moreno, Xin Fu, Jie Zhu, Dhruva Katrekar, Yu-Ru V Shih, John Marlett, Jessica Cabotaje, Jasmine Tat, John Naughton, Leszek Lisowski, Shyni Varghese, Kang Zhang, Prashant MaliMolecular Therapy : The Journal Of The American Society Of Gene Therapy2018-04-25
SmSP2: A serine protease secreted by the blood fluke pathogen Schistosoma mansoni with anti-hemostatic properties.Adrian Leontovyč, Lenka Ulrychová, Anthony J O'Donoghue, Jiří Vondrášek, Lucie Marešová, Martin Hubálek, Pavla Fajtová, Marta Chanová, Zhenze Jiang, Charles S Craik, Conor R Caffrey, Michael Mareš, Jan Dvořák, Martin HornPLoS Neglected Tropical Diseases2018-04-20
Growth of HIV-1 Molecular Transmission Clusters in New York City.Joel O Wertheim, Ben Murrell, Sanjay R Mehta, Lisa A Forgione, Sergei L Kosakovsky Pond, Davey M Smith, Lucia V TorianThe Journal Of Infectious Diseases2018-04-20
Of mice, men and immunity: a case for evolutionary systems biology.Peter B Ernst, Anne-Ruxandra CarvunisNature Immunology2018-04-20
Organohalogens Naturally Biosynthesized in Marine Environments and Produced as Disinfection Byproducts Alter Sarco/Endoplasmic Reticulum Ca Dynamics.Jing Zheng, Shaun M K McKinnie, Abrahim El Gamal, Wei Feng, Yao Dong, Vinayak Agarwal, William Fenical, Abdhesh Kumar, Zhengyu Cao, Bradley S Moore, Isaac N PessahEnvironmental Science & Technology2018-04-20
Propagating annotations of molecular networks using in silico fragmentation.Ricardo R da Silva, Mingxun Wang, Louis-Félix Nothias, Justin J J van der Hooft, Andrés Mauricio Caraballo-Rodríguez, Evan Fox, Marcy J Balunas, Jonathan L Klassen, Norberto Peporine Lopes, Pieter C DorresteinPLoS Computational Biology2018-04-18
Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information.Stefan Janssen, Daniel McDonald, Antonio Gonzalez, Jose A Navas-Molina, Lingjing Jiang, Zhenjiang Zech Xu, Kevin Winker, Deborah M Kado, Eric Orwoll, Mark Manary, Siavash Mirarab, Rob KnightMSystems2018-04-17
Metabolic potential and in situ transcriptomic profiles of previously uncharacterized key microbial groups involved in coupled carbon, nitrogen and sulfur cycling in anoxic marine zones.Alvaro M Plominsky, Nicole Trefault, Sheila Podell, Jessica M Blanton, Rodrigo De la Iglesia, Eric E Allen, Peter von Dassow, Osvaldo UlloaEnvironmental Microbiology2018-04-16
Modulation of the intestinal bile acid/farnesoid X receptor/fibroblast growth factor 15 axis improves alcoholic liver disease in mice.Phillipp Hartmann, Katrin Hochrath, Angela Horvath, Peng Chen, Caroline T Seebauer, Cristina Llorente, Lirui Wang, Yazen Alnouti, Derrick E Fouts, Peter Stärkel, Rohit Loomba, Sally Coulter, Christopher Liddle, Ruth T Yu, Lei Ling, Stephen J Rossi, Alex M DePaoli, Michael Downes, Ronald M Evans, David A Brenner, Bernd SchnablHepatology (Baltimore, Md.)2018-04-16
Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655.Ye Gao, James T Yurkovich, Sang Woo Seo, Ilyas Kabimoldayev, Andreas Dräger, Ke Chen, Anand V Sastry, Xin Fang, Nathan Mih, Laurence Yang, Johannes Eichner, Byung-Kwan Cho, Donghyuk Kim, Bernhard O PalssonNucleic Acids Research2018-04-13
A High-Resolution Digital DNA Melting Platform for Robust Sequence Profiling and Enhanced Genotype Discrimination.Mridu Sinha, Hannah Mack, Todd P Coleman, Stephanie I FraleySLAS Technology2018-04-13
Herd Immunity Likely Protected the Men Who Have Sex With Men in the Recent Hepatitis A Outbreak in San Diego, California.Davey Smith, Christina Huynh, Adam J Moore, Andrew Frick, Christy Anderson, Magali Porrachia, Brianna Scott, Sarah Stous, Robert Schooley, Susan Little, AsherLev T SantosClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2018-04-12
Dysregulation of serum bile acids and FGF19 in alcoholic hepatitis.Katharina Brandl, Phillipp Hartmann, Lily J Jih, Donald P Pizzo, Josepmaria Argemi, Meritxell Ventura-Cots, Sally Coulter, Christopher Liddle, Lei Ling, Stephen J Rossi, Alex M DePaoli, Rohit Loomba, Wajahat Z Mehal, Derrick E Fouts, Michael R Lucey, Francisco Bosques-Padilla, Philippe Mathurin, Alexander Louvet, Guadalupe Garcia-Tsao, Elizabeth C Verna, Juan G Abraldes, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie Shawcross, Peter Stärkel, Samuel B Ho, Ramon Bataller, Bernd SchnablJournal Of Hepatology2018-04-12
Diversity of the midstream urine microbiome in adults with chronic kidney disease.Holly Kramer, Gina Kuffel, Krystal Thomas-White, Alan J Wolfe, Kavitha Vellanki, David J Leehey, Vinod K Bansal, Linda Brubaker, Robert Flanigan, Julia Koval, Anuradha Wadhwa, Michael J ZillioxInternational Urology And Nephrology2018-04-12
Disruption of in Head and Neck Cancer Promotes Favorable Chemotherapeutic Responses Linked to Hypomethylation.Nam Bui, Justin K Huang, Ana Bojorquez-Gomez, Katherine Licon, Kyle S Sanchez, Sean N Tang, Alex N Beckett, Tina Wang, Wei Zhang, John Paul Shen, Jason F Kreisberg, Trey IdekerMolecular Cancer Therapeutics2018-04-10
Genome Reduction in Species within the Gut of an Amphipod from the Ocean's Deepest Point.Weipeng Zhang, Ren-Mao Tian, Jin Sun, Salim Bougouffa, Wei Ding, Lin Cai, Yi Lan, Haoya Tong, Yongxin Li, Alan J Jamieson, Vladimir B Bajic, Jeffrey C Drazen, Douglas Bartlett, Pei-Yuan QianMSystems2018-04-10
Earth Microbiome Project and Global Systems Biology.Jack A Gilbert, Janet K Jansson, Rob KnightMSystems2018-04-10
Wnt5A Signaling Promotes Defense Against Bacterial Pathogens by Activating a Host Autophagy Circuit.Suborno Jati, Suman Kundu, Arijit Chakraborty, Sushil Kumar Mahata, Victor Nizet, Malini SenFrontiers In Immunology2018-04-09
Hopanoid-producing bacteria in the Red Sea include the major marine nitrite oxidizers.Jenan J Kharbush, Luke R Thompson, Mohamed Fauzi Haroon, Rob Knight, Lihini I AluwihareFEMS Microbiology Ecology2018-04-09
Quorum sensing between bacterial species on the skin protects against epidermal injury in atopic dermatitis.Michael R Williams, Stephen K Costa, Livia S Zaramela, Shadi Khalil, Daniel A Todd, Heather L Winter, James A Sanford, Alan M O'Neill, Marc C Liggins, Teruaki Nakatsuji, Nadja B Cech, Ambrose L Cheung, Karsten Zengler, Alexander R Horswill, Richard L GalloScience Translational Medicine2018-04-09
Human Milk Oligosaccharides at the Interface of Maternal-Infant Health.Lars BodeBreastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine2018-04-07
Integrated Approaches to Analyze Big Data in the Perinatal/Neonatal Space.Rob KnightBreastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine2018-04-07
Characterization and Application of Marine Microbial Omega-3 Polyunsaturated Fatty Acid Synthesis.Marco N Allemann, Eric E AllenMethods In Enzymology2018-04-06
The substrate-binding cap of the UDP-diacylglucosamine pyrophosphatase LpxH is highly flexible, enabling facile substrate binding and product release.Thomas E Bohl, Pek Ieong, John K Lee, Thomas Lee, Jayakanth Kankanala, Ke Shi, Özlem Demir, Kayo Kurahashi, Rommie E Amaro, Zhengqiang Wang, Hideki AiharaThe Journal Of Biological Chemistry2018-04-06
Restoring mitochondrial calcium uniporter expression in diabetic mouse heart improves mitochondrial calcium handling and cardiac function.Jorge Suarez, Federico Cividini, Brian T Scott, Kim Lehmann, Julieta Diaz-Juarez, Tanja Diemer, Anzhi Dai, Jorge A Suarez, Mohit Jain, Wolfgang H DillmannThe Journal Of Biological Chemistry2018-04-06
Vertically distinct microbial communities in the Mariana and Kermadec trenches.Logan M Peoples, Sierra Donaldson, Oladayo Osuntokun, Qing Xia, Alex Nelson, Jessica Blanton, Eric E Allen, Matthew J Church, Douglas H BartlettPloS One2018-04-05
Antigen-specific antibody Fc glycosylation enhances humoral immunity via the recruitment of complement.Giuseppe Lofano, Matthew J Gorman, Ashraf S Yousif, Wen-Han Yu, Julie M Fox, Anne-Sophie Dugast, Margaret E Ackerman, Todd J Suscovich, Joshua Weiner, Dan Barouch, Hendrik Streeck, Susan Little, Davey Smith, Douglas Richman, Douglas Lauffenburger, Bruce D Walker, Michael S Diamond, Galit AlterScience Immunology2018-04-03
Characterization and Biochemical Assays of Streptomyces Vanadium-Dependent Chloroperoxidases.Shaun M K McKinnie, Zachary D Miles, Bradley S MooreMethods In Enzymology2018-04-02
High-throughput interaction screens illuminate the role of c-di-AMP in cyanobacterial nighttime survival.Benjamin E Rubin, TuAnh Ngoc Huynh, David G Welkie, Spencer Diamond, Ryan Simkovsky, Emily C Pierce, Arnaud Taton, Laura C Lowe, Jenny J Lee, Scott A Rifkin, Joshua J Woodward, Susan S GoldenPLoS Genetics2018-04-02
The social network of microorganisms - how auxotrophies shape complex communities.Karsten Zengler, Livia S ZaramelaNature Reviews. Microbiology2018-03-31
Template-assisted synthesis of adenine-mutagenized cDNA by a retroelement protein complex.Sumit Handa, Yong Jiang, Sijia Tao, Robert Foreman, Raymond F Schinazi, Jeff F Miller, Partho GhoshNucleic Acids Research2018-03-22
Rational engineering of synthetic microbial systems: from single cells to consortia.Philip Bittihn, M Omar Din, Lev S Tsimring, Jeff HastyCurrent Opinion In Microbiology2018-03-22
High-Level dCas9 Expression Induces Abnormal Cell Morphology in Escherichia coli.Suhyung Cho, Donghui Choe, Eunju Lee, Sun Chang Kim, Bernhard Palsson, Byung-Kwan ChoACS Synthetic Biology2018-03-21
BALDR: a computational pipeline for paired heavy and light chain immunoglobulin reconstruction in single-cell RNA-seq data.Amit A Upadhyay, Robert C Kauffman, Amber N Wolabaugh, Alice Cho, Nirav B Patel, Samantha M Reiss, Colin Havenar-Daughton, Reem A Dawoud, Gregory K Tharp, Iñaki Sanz, Bali Pulendran, Shane Crotty, F Eun-Hyung Lee, Jens Wrammert, Steven E BosingerGenome Medicine2018-03-20
AIBP protects against metabolic abnormalities and atherosclerosis.Dina A Schneider, Soo-Ho Choi, Colin Agatisa-Boyle, Laurence Zhu, Jungsu Kim, Jennifer Pattison, Dorothy D Sears, Philip L S M Gordts, Longhou Fang, Yury I MillerJournal Of Lipid Research2018-03-20
Characterization of murine antibody responses to vaccinia virus envelope protein A14 reveals an immunodominant antigen lacking of effective neutralization targets.Xiangzhi Meng, Thomas Kaever, Bo Yan, Paula Traktman, Dirk M Zajonc, Bjoern Peters, Shane Crotty, Yan XiangVirology2018-03-17
Houston Consensus Conference on Testing for Helicobacter pylori Infection in the United States.Hashem B El-Serag, John Y Kao, Fasiha Kanwal, Mark Gilger, Frank LoVecchio, Steven F Moss, Sheila E Crowe, Adam Elfant, Thomas Haas, Ronald J Hapke, David Y GrahamClinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association2018-03-17
KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples.Jeremiah J Minich, Qiyun Zhu, Stefan Janssen, Ryan Hendrickson, Amnon Amir, Russ Vetter, John Hyde, Megan M Doty, Kristina Stillwell, James Benardini, Jae H Kim, Eric E Allen, Kasthuri Venkateswaran, Rob KnightMSystems2018-03-13
Humanized Exposures of a β-Lactam-β-Lactamase Inhibitor, Tazobactam, versus Non-β-Lactam-β-Lactamase Inhibitor, Avibactam, with or without Colistin, against Acinetobacter baumannii in Murine Thigh and Lung Infection Models.Marguerite L Monogue, George Sakoulas, Victor Nizet, David P NicolauPharmacology2018-03-13
Experimental Chagas disease-induced perturbations of the fecal microbiome and metabolome.Laura-Isobel McCall, Anupriya Tripathi, Fernando Vargas, Rob Knight, Pieter C Dorrestein, Jair L Siqueira-NetoPLoS Neglected Tropical Diseases2018-03-12
Samholides, Swinholide-Related Metabolites from a Marine Cyanobacterium cf. Phormidium sp.Yiwen Tao, Pinglin Li, Daojing Zhang, Evgenia Glukhov, Lena Gerwick, Chen Zhang, Thomas F Murray, William H GerwickThe Journal Of Organic Chemistry2018-03-08
Gut microbiota mediates diurnal variation of acetaminophen induced acute liver injury in mice.Shenhai Gong, Tian Lan, Liyan Zeng, Haihua Luo, Xiaoyu Yang, Na Li, Xiaojiao Chen, Zhanguo Liu, Rui Li, Sanda Win, Shuwen Liu, Hongwei Zhou, Bernd Schnabl, Yong Jiang, Neil Kaplowitz, Peng ChenJournal Of Hepatology2018-03-08
Chikungunya Arthritis Mechanisms in the Americas: A Cross-Sectional Analysis of Chikungunya Arthritis Patients Twenty-Two Months After Infection Demonstrating No Detectable Viral Persistence in Synovial Fluid.Aileen Y Chang, Karen A O Martins, Liliana Encinales, St Patrick Reid, Marlon Acuña, Carlos Encinales, Christian B Matranga, Nelly Pacheco, Carlos Cure, Bhavarth Shukla, Teofilo Ruiz Arteta, Richard Amdur, Lisa H Cazares, Melissa Gregory, Michael D Ward, Alexandra Porras, Alejandro Rico Mendoza, Lian Dong, Tara Kenny, Ernie Brueggemann, Lydia G Downey, Priyanka Kamalapathy, Paola Lichtenberger, Orlando Falls, Gary L Simon, Jeffrey M Bethony, Gary S FiresteinArthritis & Rheumatology (Hoboken, N.J.)2018-03-07
Neurocognitive impairment with hepatitis C and HIV co-infection in Southern Brazil.Sérgio Monteiro de Almeida, Ana Paula de Pereira, Maria Lucia Alves Pedroso, Clea E Ribeiro, Indianara Rotta, Bin Tang, Anya Umlauf, Donald Franklin, Rowan G Saloner, Maria Geny Ribas Batista, Scott Letendre, Robert K Heaton, Ronald J Ellis, Mariana Cherner, Journal Of Neurovirology2018-03-07
Group B Streptococcus Biofilm Regulatory Protein A Contributes to Bacterial Physiology and Innate Immune Resistance.Kathryn A Patras, Jaclyn Derieux, Mahmoud M Al-Bassam, Nichole Adiletta, Alison Vrbanac, John D Lapek, Karsten Zengler, David J Gonzalez, Victor NizetThe Journal Of Infectious Diseases2018-03-06
The Role of Ion Transporters in the Pathophysiology of Infectious Diarrhea.Soumita Das, Rashini Jayaratne, Kim E BarrettCellular And Molecular Gastroenterology And Hepatology2018-03-05
Frequency of Chronic Joint Pain Following Chikungunya Virus Infection: A Colombian Cohort Study.Aileen Y Chang, Liliana Encinales, Alexandra Porras, Nelly Pacheco, St Patrick Reid, Karen A O Martins, Shamila Pacheco, Eyda Bravo, Marianda Navarno, Alejandro Rico Mendoza, Richard Amdur, Priyanka Kamalapathy, Gary S Firestein, Jeffrey M Bethony, Gary L SimonArthritis & Rheumatology (Hoboken, N.J.)2018-03-02
Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions.Erol S Kavvas, Yara Seif, James T Yurkovich, Charles Norsigian, Saugat Poudel, William W Greenwald, Sankha Ghatak, Bernhard O Palsson, Jonathan M MonkBMC Systems Biology2018-03-02
The Role of Intestinal C-type Regenerating Islet Derived-3 Lectins for Nonalcoholic Steatohepatitis.Sena Bluemel, Lirui Wang, Cameron Martino, Suhan Lee, Yanhan Wang, Brandon Williams, Angela Horvath, Vanessa Stadlbauer, Karsten Zengler, Bernd SchnablHepatology Communications2018-02-28
Emerging Technologies for Molecular Diagnosis of Sepsis.Mridu Sinha, Julietta Jupe, Hannah Mack, Todd P Coleman, Shelley M Lawrence, Stephanie I FraleyClinical Microbiology Reviews2018-02-28
A commensal strain of protects against skin neoplasia.Teruaki Nakatsuji, Tiffany H Chen, Anna M Butcher, Lynnie L Trzoss, Sang-Jip Nam, Karina T Shirakawa, Wei Zhou, Julia Oh, Michael Otto, William Fenical, Richard L GalloScience Advances2018-02-28
Creating a 3D microbial and chemical snapshot of a human habitat.Clifford A Kapono, James T Morton, Amina Bouslimani, Alexey V Melnik, Kayla Orlinsky, Tal Luzzatto Knaan, Neha Garg, Yoshiki Vázquez-Baeza, Ivan Protsyuk, Stefan Janssen, Qiyun Zhu, Theodore Alexandrov, Larry Smarr, Rob Knight, Pieter C DorresteinScientific Reports2018-02-27
Improving saliva shotgun metagenomics by chemical host DNA depletion.Clarisse A Marotz, Jon G Sanders, Cristal Zuniga, Livia S Zaramela, Rob Knight, Karsten ZenglerMicrobiome2018-02-27
An apoplastic peptide activates salicylic acid signalling in maize.Sebastian Ziemann, Karina van der Linde, Urs Lahrmann, Beyda Acar, Farnusch Kaschani, Tom Colby, Markus Kaiser, Yezhang Ding, Eric Schmelz, Alisa Huffaker, Nicholas Holton, Cyril Zipfel, Gunther DoehlemannNature Plants2018-02-26
Oligonucleotide conjugated multi-functional adeno-associated viruses.Dhruva Katrekar, Ana M Moreno, Genghao Chen, Atharv Worlikar, Prashant MaliScientific Reports2018-02-26
Discovery, Biosynthesis and Stress-Related Accumulation of Dolabradiene-Derived Defenses in Maize.Sibongile Mafu, Yezhang Ding, Katherine M Murphy, Omar Yaacoobi, J Bennett Addison, Qiang Wang, Zhouxin Shen, Steven P Briggs, Jörg Bohlmann, Gabriel Castro-Falcon, Chambers C Hughes, Mariam Betsiashvili, Alisa Huffaker, Eric A Schmelz, Philipp ZerbePlant Physiology2018-02-23
Epitopes for neutralizing antibodies induced by HIV-1 envelope glycoprotein BG505 SOSIP trimers in rabbits and macaques.P J Klasse, Thomas J Ketas, Christopher A Cottrell, Gabriel Ozorowski, Gargi Debnath, Diawoye Camara, Erik Francomano, Pavel Pugach, Rajesh P Ringe, Celia C LaBranche, Marit J van Gils, Christine A Bricault, Dan H Barouch, Shane Crotty, Guido Silvestri, Sudhir Kasturi, Bali Pulendran, Ian A Wilson, David C Montefiori, Rogier W Sanders, Andrew B Ward, John P MoorePLoS Pathogens2018-02-23
Induction of autophagy by PI3K/MTOR and PI3K/MTOR/BRD4 inhibitors suppresses HIV-1 replication.Grant R Campbell, Rachel S Bruckman, Shayna D Herns, Shweta Joshi, Donald L Durden, Stephen A SpectorThe Journal Of Biological Chemistry2018-02-23
Group B Streptococcal Maternal Colonization and Neonatal Disease: Molecular Mechanisms and Preventative Approaches.Kathryn A Patras, Victor NizetFrontiers In Pediatrics2018-02-22
Clove Bud Oil Modulates Pathogenicity Phenotypes of the Opportunistic Human Pathogen Pseudomonas aeruginosa.Jayalekshmi Haripriyan, Athira Omanakuttan, Nitasha D Menon, Muralidharan Vanuopadath, Sudarslal Sadasivan Nair, Ross Corriden, Bipin G Nair, Victor Nizet, Geetha B KumarScientific Reports2018-02-21
Feeding and grazing impact by the bloom-forming euglenophyte Eutreptiella eupharyngea on marine eubacteria and cyanobacteria.Yeong Du Yoo, Kyeong Ah Seong, Hyung Seop Kim, Hae Jin Jeong, Eun Young Yoon, Jaeyeon Park, Jong Im Kim, Woongghi Shin, Brian PalenikHarmful Algae2018-02-21
Bacterial community changes in an industrial algae production system.Scott P Fulbright, Adam Robbins-Pianka, Donna Berg-Lyons, Rob Knight, Kenneth F Reardon, Stephen T ChisholmAlgal Research2018-02-21
Gut microbiota, fatty liver disease, and hepatocellular carcinoma.Huikuan Chu, Brandon Williams, Bernd SchnablLiver Research2018-02-21
Fluvirucin B6, a new macrolactam isolated from a marine-derived actinomycete of the genus Nocardiopsis.Alain S Leutou, Inho Yang, Tu Cam Le, Dongyup Hahn, Kyung-Min Lim, Sang-Jip Nam, William FenicalThe Journal Of Antibiotics2018-02-21
Membrane-Derived Vesicles Promote Bacterial Virulence and Confer Protective Immunity in Murine Infection Models.Fatemeh Askarian, John D Lapek, Mitesh Dongre, Chih-Ming Tsai, Monika Kumaraswamy, Armin Kousha, J Andrés Valderrama, Judith A Ludviksen, Jorunn P Cavanagh, Satoshi Uchiyama, Tom E Mollnes, David J Gonzalez, Sun N Wai, Victor Nizet, Mona JohannessenFrontiers In Microbiology2018-02-20
Autophagy and innate immunity: Insights from invertebrate model organisms.Cheng-Ju Kuo, Malene Hansen, Emily TroemelAutophagy2018-02-17
Identification of the S-transferase like superfamily bacillithiol transferases encoded by Bacillus subtilis.Varahenage R Perera, John D Lapek, Gerald L Newton, David J Gonzalez, Kit PoglianoPloS One2018-02-16
Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models.Aeriel Belk, Zhenjiang Zech Xu, David O Carter, Aaron Lynne, Sibyl Bucheli, Rob Knight, Jessica L MetcalfGenes2018-02-16
Coprolites reveal ecological interactions lost with the extinction of New Zealand birds.Alexander P Boast, Laura S Weyrich, Jamie R Wood, Jessica L Metcalf, Rob Knight, Alan CooperProceedings Of The National Academy Of Sciences Of The United States Of America2018-02-15
Broad-Spectrum Neutralization of Pore-Forming Toxins with Human Erythrocyte Membrane-Coated Nanosponges.Yijie Chen, Mengchun Chen, Yue Zhang, Joo Hee Lee, Tamara Escajadillo, Hua Gong, Ronnie H Fang, Weiwei Gao, Victor Nizet, Liangfang ZhangAdvanced Healthcare Materials2018-02-13
Structure, function, and mechanism of the core circadian clock in cyanobacteria.Jeffrey A Swan, Susan S Golden, Andy LiWang, Carrie L PartchThe Journal Of Biological Chemistry2018-02-13
G.I. pros: Antimicrobial defense in the gastrointestinal tract.Lawton K Chung, Manuela RaffatelluSeminars In Cell & Developmental Biology2018-02-12
Spatiotemporally regulated proteolysis to dissect the role of vegetative proteins during Bacillus subtilis sporulation: cell-specific requirement of σ and σ.Eammon P Riley, Aude Trinquier, Madeline L Reilly, Marine Durchon, Varahenage R Perera, Kit Pogliano, Javier Lopez-GarridoMolecular Microbiology2018-02-12
Expanding our Understanding of the Role of the Microbiome in Health and Disease.Rob KnightArchives Of Medical Research2018-02-09
Leaf-Encapsulated Vaccines: Agroinfiltration and Transient Expression of the Antigen B in Radish Leaves.Pei-Feng Liu, Yanhan Wang, Robert G Ulrich, Christopher W Simmons, Jean S VanderGheynst, Richard L Gallo, Chun-Ming HuangJournal Of Immunology Research2018-02-07
Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice.Gil Sharon, Nikki Jamie Cruz, Dae-Wook Kang, Michael J Gandal, Bo Wang, Young-Mo Kim, Erika M Zink, Cameron P Casey, Bryn C Taylor, Christianne J Lane, Lisa M Bramer, Nancy G Isern, David W Hoyt, Cecilia Noecker, Michael J Sweredoski, Annie Moradian, Elhanan Borenstein, Janet K Jansson, Rob Knight, Thomas O Metz, Carlos Lois, Daniel H Geschwind, Rosa Krajmalnik-Brown, Sarkis K MazmanianCell2018-02-06
Genome-scale analysis of Methicillin-resistant Staphylococcus aureus USA300 reveals a tradeoff between pathogenesis and drug resistance.Donghui Choe, Richard Szubin, Samira Dahesh, Suhyung Cho, Victor Nizet, Bernhard Palsson, Byung-Kwan ChoScientific Reports2018-02-02
Overview and systematic review of studies of microbiome in schizophrenia and bipolar disorder.Tanya T Nguyen, Tomasz Kosciolek, Lisa T Eyler, Rob Knight, Dilip V JesteJournal Of Psychiatric Research2018-01-31
Tundrenone: An Atypical Secondary Metabolite from Bacteria with Highly Restricted Primary Metabolism.Aaron W Puri, Emily Mevers, Timothy R Ramadhar, Daniel Petras, Darren Liu, Jörn Piel, Pieter C Dorrestein, E Peter Greenberg, Mary E Lidstrom, Jon ClardyJournal Of The American Chemical Society2018-01-30
Virulence Role of the GlcNAc Side Chain of the Lancefield Cell Wall Carbohydrate Antigen in Non-M1-Serotype Group A .Anna Henningham, Mark R Davies, Satoshi Uchiyama, Nina M van Sorge, Sean Lund, Kelsey T Chen, Mark J Walker, Jason N Cole, Victor NizetMBio2018-01-30
Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction.Youlian Zhou, Zhenjiang Zech Xu, Yan He, Yunsheng Yang, Le Liu, Qianyun Lin, Yuqiang Nie, Mingsong Li, Fachao Zhi, Side Liu, Amnon Amir, Antonio González, Anupriya Tripathi, Minhu Chen, Gary D Wu, Rob Knight, Hongwei Zhou, Ye ChenMSystems2018-01-30
Modeling the multi-scale mechanisms of macromolecular resource allocation.Laurence Yang, James T Yurkovich, Zachary A King, Bernhard O PalssonCurrent Opinion In Microbiology2018-01-24
Biosynthesis of Orthogonal Molecules Using Ferredoxin and Ferredoxin-NADP Reductase Systems Enables Genetically Encoded PhyB Optogenetics.Phillip Kyriakakis, Marianne Catanho, Nicole Hoffner, Walter Thavarajah, Vincent J Hu, Syh-Shiuan Chao, Athena Hsu, Vivian Pham, Ladan Naghavian, Lara E Dozier, Gentry N Patrick, Todd P ColemanACS Synthetic Biology2018-01-24
The human naive B cell repertoire contains distinct subclasses for a germline-targeting HIV-1 vaccine immunogen.Colin Havenar-Daughton, Anita Sarkar, Daniel W Kulp, Laura Toy, Xiaozhen Hu, Isaiah Deresa, Oleksandr Kalyuzhniy, Kirti Kaushik, Amit A Upadhyay, Sergey Menis, Elise Landais, Liwei Cao, Jolene K Diedrich, Sonu Kumar, Torben Schiffner, Samantha M Reiss, Grégory Seumois, John R Yates, James C Paulson, Steven E Bosinger, Ian A Wilson, William R Schief, Shane CrottyScience Translational Medicine2018-01-23
Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018.Lorenzo Galluzzi, Ilio Vitale, Stuart A Aaronson, John M Abrams, Dieter Adam, Patrizia Agostinis, Emad S Alnemri, Lucia Altucci, Ivano Amelio, David W Andrews, Margherita Annicchiarico-Petruzzelli, Alexey V Antonov, Eli Arama, Eric H Baehrecke, Nickolai A Barlev, Nicolas G Bazan, Francesca Bernassola, Mathieu J M Bertrand, Katiuscia Bianchi, Mikhail V Blagosklonny, Klas Blomgren, Christoph Borner, Patricia Boya, Catherine Brenner, Michelangelo Campanella, Eleonora Candi, Didac Carmona-Gutierrez, Francesco Cecconi, Francis K-M Chan, Navdeep S Chandel, Emily H Cheng, Jerry E Chipuk, John A Cidlowski, Aaron Ciechanover, Gerald M Cohen, Marcus Conrad, Juan R Cubillos-Ruiz, Peter E Czabotar, Vincenzo D'Angiolella, Ted M Dawson, Valina L Dawson, Vincenzo De Laurenzi, Ruggero De Maria, Klaus-Michael Debatin, Ralph J DeBerardinis, Mohanish Deshmukh, Nicola Di Daniele, Francesco Di Virgilio, Vishva M Dixit, Scott J Dixon, Colin S Duckett, Brian D Dynlacht, Wafik S El-Deiry, John W Elrod, Gian Maria Fimia, Simone Fulda, Ana J García-Sáez, Abhishek D Garg, Carmen Garrido, Evripidis Gavathiotis, Pierre Golstein, Eyal Gottlieb, Douglas R Green, Lloyd A Greene, Hinrich Gronemeyer, Atan Gross, Gyorgy Hajnoczky, J Marie Hardwick, Isaac S Harris, Michael O Hengartner, Claudio Hetz, Hidenori Ichijo, Marja Jäättelä, Bertrand Joseph, Philipp J Jost, Philippe P Juin, William J Kaiser, Michael Karin, Thomas Kaufmann, Oliver Kepp, Adi Kimchi, Richard N Kitsis, Daniel J Klionsky, Richard A Knight, Sharad Kumar, Sam W Lee, John J Lemasters, Beth Levine, Andreas Linkermann, Stuart A Lipton, Richard A Lockshin, Carlos López-Otín, Scott W Lowe, Tom Luedde, Enrico Lugli, Marion MacFarlane, Frank Madeo, Michal Malewicz, Walter Malorni, Gwenola Manic, Jean-Christophe Marine, Seamus J Martin, Jean-Claude Martinou, Jan Paul Medema, Patrick Mehlen, Pascal Meier, Sonia Melino, Edward A Miao, Jeffery D Molkentin, Ute M Moll, Cristina Muñoz-Pinedo, Shigekazu Nagata, Gabriel Nuñez, Andrew Oberst, Moshe Oren, Michael Overholtzer, Michele Pagano, Theocharis Panaretakis, Manolis Pasparakis, Josef M Penninger, David M Pereira, Shazib Pervaiz, Marcus E Peter, Mauro Piacentini, Paolo Pinton, Jochen H M Prehn, Hamsa Puthalakath, Gabriel A Rabinovich, Markus Rehm, Rosario Rizzuto, Cecilia M P Rodrigues, David C Rubinsztein, Thomas Rudel, Kevin M Ryan, Emre Sayan, Luca Scorrano, Feng Shao, Yufang Shi, John Silke, Hans-Uwe Simon, Antonella Sistigu, Brent R Stockwell, Andreas Strasser, Gyorgy Szabadkai, Stephen W G Tait, Daolin Tang, Nektarios Tavernarakis, Andrew Thorburn, Yoshihide Tsujimoto, Boris Turk, Tom Vanden Berghe, Peter Vandenabeele, Matthew G Vander Heiden, Andreas Villunger, Herbert W Virgin, Karen H Vousden, Domagoj Vucic, Erwin F Wagner, Henning Walczak, David Wallach, Ying Wang, James A Wells, Will Wood, Junying Yuan, Zahra Zakeri, Boris Zhivotovsky, Laurence Zitvogel, Gerry Melino, Guido KroemerCell Death And Differentiation2018-01-23
Innate Immune Interactions between and Host Neutrophils.Janet Z Liu, Syed R Ali, Ethan Bier, Victor NizetFrontiers In Cellular And Infection Microbiology2018-01-22
Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra.Alexey Gurevich, Alla Mikheenko, Alexander Shlemov, Anton Korobeynikov, Hosein Mohimani, Pavel A PevznerNature Microbiology2018-01-22
NF-κB, inflammation, immunity and cancer: coming of age.Koji Taniguchi, Michael KarinNature Reviews. Immunology2018-01-22
Intestinal dysbiosis and permeability: the yin and yang in alcohol dependence and alcoholic liver disease.Peter Stärkel, Sophie Leclercq, Philippe de Timary, Bernd SchnablClinical Science (London, England : 1979)2018-01-19
Genetic risk, dysbiosis, and treatment stratification using host genome and gut microbiome in inflammatory bowel disease.Ahmed Moustafa, Weizhong Li, Ericka L Anderson, Emily H M Wong, Parambir S Dulai, William J Sandborn, William Biggs, Shibu Yooseph, Marcus B Jones, J Craig Venter, Karen E Nelson, John T Chang, Amalio Telenti, Brigid S BolandClinical And Translational Gastroenterology2018-01-18
Hybrid biomembrane-functionalized nanorobots for concurrent removal of pathogenic bacteria and toxins.Berta Esteban-Fernández de Ávila, Pavimol Angsantikul, Doris E Ramírez-Herrera, Fernando Soto, Hazhir Teymourian, Diana Dehaini, Yijie Chen, Liangfang Zhang, Joseph WangScience Robotics2018-01-18
HIV, Hepatitis B Virus, and Hepatitis C Virus Prevalence Among High-Risk Populations in South India.Thongadi Ramesh Dinesha, Jayaseelan Boobalan, Sathasivam Sivamalar, Sunil S Solomon, Selvamuthu Poongulali, Ambrose Pradeep, Kailapuri G Murugavel, Pachamuthu Balakrishnan, Davey M Smith, Shanmugam SaravananAIDS Research And Human Retroviruses2018-01-17
Size, Composition, and Evolution of HIV DNA Populations during Early Antiretroviral Therapy and Intensification with Maraviroc.Antoine Chaillon, Sara Gianella, Steven M Lada, Josué Perez-Santiago, Parris Jordan, Caroline Ignacio, Maile Karris, Douglas D Richman, Sanjay R Mehta, Susan J Little, Joel O Wertheim, Davey M SmithJournal Of Virology2018-01-17
Bastimolide B, an Antimalarial 24-Membered Marine Macrolide Possessing a tert-Butyl Group.Chang-Lun Shao, Xiao-Feng Mou, Fei Cao, Carmenza Spadafora, Evgenia Glukhov, Lena Gerwick, Chang-Yun Wang, William H GerwickJournal Of Natural Products2018-01-12
Listeria monocytogenes endocarditis: case report, review of the literature, and laboratory evaluation of potential novel antibiotic synergies.Monika Kumaraswamy, Carter Do, George Sakoulas, Poochit Nonejuie, Guan Woei Tseng, Helen King, Joshua Fierer, Joe Pogliano, Victor NizetInternational Journal Of Antimicrobial Agents2018-01-11
MHC class I loaded ligands from breast cancer cell lines: A potential HLA-I-typed antigen collection.Dmitri V Rozanov, Nikita D Rozanov, Kami E Chiotti, Ashok Reddy, Phillip A Wilmarth, Larry L David, Seung W Cha, Sunghee Woo, Pavel Pevzner, Vineet Bafna, Gregory G Burrows, Juha K Rantala, Trevor Levin, Pavana Anur, Katie Johnson-Camacho, Shaadi Tabatabaei, Daniel J Munson, Tullia C Bruno, Jill E Slansky, John W Kappler, Naoto Hirano, Sebastian Boegel, Bernard A Fox, Colt Egelston, Diana L Simons, Grecia Jimenez, Peter P Lee, Joe W Gray, Paul T SpellmanJournal Of Proteomics2018-01-10
Biosynthesis of the Antibiotic Bicyclomycin in Soil and Pathogenic Bacteria.Jonathan R Chekan, Bradley S MooreBiochemistry2018-01-09
Exploration of the Germline Genome of the Ciliate through Single-Cell Omics (Transcriptomics and Genomics).Xyrus X Maurer-Alcalá, Rob Knight, Laura A KatzMBio2018-01-09
The SLC22 Transporter Family: A Paradigm for the Impact of Drug Transporters on Metabolic Pathways, Signaling, and Disease.Sanjay K NigamAnnual Review Of Pharmacology And Toxicology2018-01-09
Metabolic capability and in situ activity of microorganisms in an oil reservoir.Yi-Fan Liu, Daniela Domingos Galzerani, Serge Maurice Mbadinga, Livia S Zaramela, Ji-Dong Gu, Bo-Zhong Mu, Karsten ZenglerMicrobiome2018-01-05
Tauroursodeoxycholic acid inhibits intestinal inflammation and barrier disruption in mice with non-alcoholic fatty liver disease.Weijun Wang, Jinfang Zhao, Wenfang Gui, Dan Sun, Haijiang Dai, Li Xiao, Huikuan Chu, Fan Du, Qingjing Zhu, Bernd Schnabl, Kai Huang, Ling Yang, Xiaohua HouBritish Journal Of Pharmacology2018-01-03
Homospermidine Lipids: A Compound Class Specifically Formed during Fruiting Body Formation of Myxococcus xanthus DK1622.Michael Hoffmann, David Auerbach, Fabian Panter, Thomas Hoffmann, Pieter C Dorrestein, Rolf MüllerACS Chemical Biology2017-12-28
CYP51 is an essential drug target for the treatment of primary amoebic meningoencephalitis (PAM).Anjan Debnath, Claudia M Calvet, Gareth Jennings, Wenxu Zhou, Alexander Aksenov, Madeline R Luth, Ruben Abagyan, W David Nes, James H McKerrow, Larissa M PodustPLoS Neglected Tropical Diseases2017-12-28
The human microbiome in evolution.Emily R Davenport, Jon G Sanders, Se Jin Song, Katherine R Amato, Andrew G Clark, Rob KnightBMC Biology2017-12-27
Precursor Frequency and Affinity Determine B Cell Competitive Fitness in Germinal Centers, Tested with Germline-Targeting HIV Vaccine Immunogens.Robert K Abbott, Jeong Hyun Lee, Sergey Menis, Patrick Skog, Meghan Rossi, Takayuki Ota, Daniel W Kulp, Deepika Bhullar, Oleksandr Kalyuzhniy, Colin Havenar-Daughton, William R Schief, David Nemazee, Shane CrottyImmunity2017-12-26
Urine trouble: should we think differently about UTI?Travis K Price, Evann E Hilt, Tanaka J Dune, Elizabeth R Mueller, Alan J Wolfe, Linda BrubakerInternational Urogynecology Journal2017-12-26
3D molecular cartography using LC-MS facilitated by Optimus and 'ili software.Ivan Protsyuk, Alexey V Melnik, Louis-Felix Nothias, Luca Rappez, Prasad Phapale, Alexander A Aksenov, Amina Bouslimani, Sergey Ryazanov, Pieter C Dorrestein, Theodore AlexandrovNature Protocols2017-12-21
Fungal and herbivore elicitation of the novel maize sesquiterpenoid, zealexin A4, is attenuated by elevated CO.Shawn A Christensen, Alisa Huffaker, James Sims, Charles T Hunter, Anna Block, Martha M Vaughan, Denis Willett, Maritza Romero, J Erik Mylroie, W Paul Williams, Eric A SchmelzPlanta2017-12-21
Unravelling the specificity and mechanism of sialic acid recognition by the gut symbiont Ruminococcus gnavus.C David Owen, Louise E Tailford, Serena Monaco, Tanja Šuligoj, Laura Vaux, Romane Lallement, Zahra Khedri, Hai Yu, Karine Lecointe, John Walshaw, Sandra Tribolo, Marc Horrex, Andrew Bell, Xi Chen, Gary L Taylor, Ajit Varki, Jesus Angulo, Nathalie JugeNature Communications2017-12-19
Fungal-induced protein hyperacetylation in maize identified by acetylome profiling.Justin W Walley, Zhouxin Shen, Maxwell R McReynolds, Eric A Schmelz, Steven P BriggsProceedings Of The National Academy Of Sciences Of The United States Of America2017-12-19
Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in .Christopher P Long, Jacqueline E Gonzalez, Adam M Feist, Bernhard O Palsson, Maciek R AntoniewiczProceedings Of The National Academy Of Sciences Of The United States Of America2017-12-18
Synergy between Ursolic and Oleanolic Acids from Vitellaria paradoxa Leaf Extract and β-Lactams against Methicillin-Resistant Staphylococcus aureus: In Vitro and In Vivo Activity and Underlying Mechanisms.Lucy Catteau, Nathalie T Reichmann, Joshua Olson, Mariana G Pinho, Victor Nizet, Françoise Van Bambeke, Joëlle Quetin-LeclercqMolecules (Basel, Switzerland)2017-12-16
Temporal variation in HIV-specific IgG subclass antibodies during acute infection differentiates spontaneous controllers from chronic progressors.Saheli Sadanand, Jishnu Das, Amy W Chung, Matthew K Schoen, Sophie Lane, Todd J Suscovich, Hendrik Streeck, Davey M Smith, Susan J Little, Douglas A Lauffenburger, Douglas D Richman, Galit AlterAIDS (London, England)2017-12-15
Mucosal Mesenchymal Cells: Secondary Barrier and Peripheral Educator for the Gut Immune System.Yosuke Kurashima, Daiki Yamamoto, Sean Nelson, Satoshi Uematsu, Peter B Ernst, Toshinori Nakayama, Hiroshi KiyonoFrontiers In Immunology2017-12-13
Skin Commensal Malassezia globosa Secreted Protease Attenuates Staphylococcus aureus Biofilm Formation.Hao Li, Bee Na Goh, Wooi Keong Teh, Zhenze Jiang, Joleen Pei Zhen Goh, Amelia Goh, Guangxi Wu, Shawn S Hoon, Manfred Raida, Andrea Camattari, Liang Yang, Anthony J O'Donoghue, Thomas L DawsonThe Journal Of Investigative Dermatology2017-12-12
Publisher Correction: Gastric acid suppression promotes alcoholic liver disease by inducing overgrowth of intestinal Enterococcus.Cristina Llorente, Peter Jepsen, Tatsuo Inamine, Lirui Wang, Sena Bluemel, Hui J Wang, Rohit Loomba, Jasmohan S Bajaj, Mitchell L Schubert, Masoumeh Sikaroodi, Patrick M Gillevet, Jun Xu, Tatiana Kisseleva, Samuel B Ho, Jessica DePew, Xin Du, Henrik T Sørensen, Hendrik Vilstrup, Karen E Nelson, David A Brenner, Derrick E Fouts, Bernd SchnablNature Communications2017-12-12
Group A Streptococcus encounters with host macrophages.J Andrés Valderrama, Victor NizetFuture Microbiology2017-12-11
Comparative transcriptomics as a guide to natural product discovery and biosynthetic gene cluster functionality.Gregory C A Amos, Takayoshi Awakawa, Robert N Tuttle, Anne-Catrin Letzel, Min Cheol Kim, Yuta Kudo, William Fenical, Bradley Moore, Paul R JensenProceedings Of The National Academy Of Sciences Of The United States Of America2017-12-11
Runx3 programs CD8 T cell residency in non-lymphoid tissues and tumours.J Justin Milner, Clara Toma, Bingfei Yu, Kai Zhang, Kyla Omilusik, Anthony T Phan, Dapeng Wang, Adam J Getzler, Toan Nguyen, Shane Crotty, Wei Wang, Matthew E Pipkin, Ananda W GoldrathNature2017-12-06
Social behaviour and gut microbiota in red-bellied lemurs (Eulemur rubriventer): In search of the role of immunity in the evolution of sociality.Aura Raulo, Lasse Ruokolainen, Avery Lane, Katherine Amato, Rob Knight, Steven Leigh, Rebecca Stumpf, Bryan White, Karen E Nelson, Andrea L Baden, Stacey R TecotThe Journal Of Animal Ecology2017-12-05
Comparison of lipopolysaccharides composition of two different strains of Helicobacter pylori.Kristy Leker, Ivonne Lozano-Pope, Keya Bandyopadhyay, Biswa P Choudhury, Marygorret ObonyoBMC Microbiology2017-12-04
Multimodal Treatment of Rhinocerebral Mucormycosis in a Pediatric Patient With Relapsed Pre-B Acute Lymphoblastic Leukemia.Zephyr D Dworsky, John S Bradley, Matthew T Brigger, Alice L Pong, Dennis John KuoThe Pediatric Infectious Disease Journal2017-12-01
Antibiotic-Induced Changes to the Host Metabolic Environment Inhibit Drug Efficacy and Alter Immune Function.Jason H Yang, Prerna Bhargava, Douglas McCloskey, Ning Mao, Bernhard O Palsson, James J CollinsCell Host & Microbe2017-11-30
Isolation and structure elucidation of lipopeptide antibiotic taromycin B from the activated taromycin biosynthetic gene cluster.Kirk A Reynolds, Hanna Luhavaya, Jie Li, Samira Dahesh, Victor Nizet, Kazuya Yamanaka, Bradley S MooreThe Journal Of Antibiotics2017-11-29
Biomimetic Platelet-Camouflaged Nanorobots for Binding and Isolation of Biological Threats.Jinxing Li, Pavimol Angsantikul, Wenjuan Liu, Berta Esteban-Fernández de Ávila, Xiaocong Chang, Elodie Sandraz, Yuyan Liang, Siyu Zhu, Yue Zhang, Chuanrui Chen, Weiwei Gao, Liangfang Zhang, Joseph WangAdvanced Materials (Deerfield Beach, Fla.)2017-11-28
Omics-based natural product discovery and the lexicon of genome mining.Henrique Machado, Robert N Tuttle, Paul R JensenCurrent Opinion In Microbiology2017-11-23
The Transcription Factor Runx3 Establishes Chromatin Accessibility of cis-Regulatory Landscapes that Drive Memory Cytotoxic T Lymphocyte Formation.Dapeng Wang, Huitian Diao, Adam J Getzler, Walter Rogal, Megan A Frederick, Justin Milner, Bingfei Yu, Shane Crotty, Ananda W Goldrath, Matthew E PipkinImmunity2017-11-22
Structure-based design of native-like HIV-1 envelope trimers to silence non-neutralizing epitopes and eliminate CD4 binding.Daniel W Kulp, Jon M Steichen, Matthias Pauthner, Xiaozhen Hu, Torben Schiffner, Alessia Liguori, Christopher A Cottrell, Colin Havenar-Daughton, Gabriel Ozorowski, Erik Georgeson, Oleksandr Kalyuzhniy, Jordan R Willis, Michael Kubitz, Yumiko Adachi, Samantha M Reiss, Mia Shin, Natalia de Val, Andrew B Ward, Shane Crotty, Dennis R Burton, William R SchiefNature Communications2017-11-21
Discrete False-Discovery Rate Improves Identification of Differentially Abundant Microbes.Lingjing Jiang, Amnon Amir, James T Morton, Ruth Heller, Ery Arias-Castro, Rob KnightMSystems2017-11-21
Higher Anti-Cytomegalovirus Immunoglobulin G Concentrations Are Associated With Worse Neurocognitive Performance During Suppressive Antiretroviral Therapy.Scott Letendre, Ajay Bharti, Ignacio Perez-Valero, Barbara Hanson, Donald Franklin, Steven Paul Woods, Sara Gianella, Michelli Faria de Oliveira, Robert K Heaton, Igor Grant, Alan L Landay, Nell Lurain, Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2017-11-20
Check your microbiota when taking the drug.Katrin Hochrath, Bernd SchnablHepatology (Baltimore, Md.)2017-11-15
A Mononuclear Iron-Dependent Methyltransferase Catalyzes Initial Steps in Assembly of the Apratoxin A Polyketide Starter Unit.Meredith A Skiba, Andrew P Sikkema, Nathan A Moss, Collin L Tran, Rebecca M Sturgis, Lena Gerwick, William H Gerwick, David H Sherman, Janet L SmithACS Chemical Biology2017-11-14
Evaluating the impact of domestication and captivity on the horse gut microbiome.Jessica L Metcalf, Se Jin Song, James T Morton, Sophie Weiss, Andaine Seguin-Orlando, Frédéric Joly, Claudia Feh, Pierre Taberlet, Eric Coissac, Amnon Amir, Eske Willerslev, Rob Knight, Valerie McKenzie, Ludovic OrlandoScientific Reports2017-11-14
A Red Algal Bourbonane Sesquiterpene Synthase Defined by Microgram-Scale NMR-Coupled Crystalline Sponge X-ray Diffraction Analysis.Roland D Kersten, Shoukou Lee, Daishi Fujita, Tomáš Pluskal, Susan Kram, Jennifer E Smith, Takahiro Iwai, Joseph P Noel, Makoto Fujita, Jing-Ke WengJournal Of The American Chemical Society2017-11-14
Staphylococcus aureus: Master Manipulator of the Skin.Michael R Williams, Teruaki Nakatsuji, Richard L GalloCell Host & Microbe2017-11-10
Structure-function characterization of three human antibodies targeting the vaccinia virus adhesion molecule D8.Michael H Matho, Andrew Schlossman, Iuliia M Gilchuk, Greg Miller, Zbigniew Mikulski, Matthias Hupfer, Jing Wang, Aruna Bitra, Xiangzhi Meng, Yan Xiang, Tom Kaever, Tzanko Doukov, Klaus Ley, Shane Crotty, Bjoern Peters, Linda C Hsieh-Wilson, James E Crowe, Dirk M ZajoncThe Journal Of Biological Chemistry2017-11-09
Mitogen-activated protein kinase (MAPK) dynamics determine cell fate in the yeast mating response.Yang Li, Julie Roberts, Zohreh AkhavanAghdam, Nan HaoThe Journal Of Biological Chemistry2017-11-09
Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity.Shabnam Shalapour, Xue-Jia Lin, Ingmar N Bastian, John Brain, Alastair D Burt, Alexander A Aksenov, Alison F Vrbanac, Weihua Li, Andres Perkins, Takaji Matsutani, Zhenyu Zhong, Debanjan Dhar, Jose A Navas-Molina, Jun Xu, Rohit Loomba, Michael Downes, Ruth T Yu, Ronald M Evans, Pieter C Dorrestein, Rob Knight, Christopher Benner, Quentin M Anstee, Michael KarinNature2017-11-08
The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota.Christian Milani, Sabrina Duranti, Francesca Bottacini, Eoghan Casey, Francesca Turroni, Jennifer Mahony, Clara Belzer, Susana Delgado Palacio, Silvia Arboleya Montes, Leonardo Mancabelli, Gabriele Andrea Lugli, Juan Miguel Rodriguez, Lars Bode, Willem de Vos, Miguel Gueimonde, Abelardo Margolles, Douwe van Sinderen, Marco VenturaMicrobiology And Molecular Biology Reviews : MMBR2017-11-08
Guidelines for Genome-Scale Analysis of Biological Rhythms.Michael E Hughes, Katherine C Abruzzi, Ravi Allada, Ron Anafi, Alaaddin Bulak Arpat, Gad Asher, Pierre Baldi, Charissa de Bekker, Deborah Bell-Pedersen, Justin Blau, Steve Brown, M Fernanda Ceriani, Zheng Chen, Joanna C Chiu, Juergen Cox, Alexander M Crowell, Jason P DeBruyne, Derk-Jan Dijk, Luciano DiTacchio, Francis J Doyle, Giles E Duffield, Jay C Dunlap, Kristin Eckel-Mahan, Karyn A Esser, Garret A FitzGerald, Daniel B Forger, Lauren J Francey, Ying-Hui Fu, Frédéric Gachon, David Gatfield, Paul de Goede, Susan S Golden, Carla Green, John Harer, Stacey Harmer, Jeff Haspel, Michael H Hastings, Hanspeter Herzel, Erik D Herzog, Christy Hoffmann, Christian Hong, Jacob J Hughey, Jennifer M Hurley, Horacio O de la Iglesia, Carl Johnson, Steve A Kay, Nobuya Koike, Karl Kornacker, Achim Kramer, Katja Lamia, Tanya Leise, Scott A Lewis, Jiajia Li, Xiaodong Li, Andrew C Liu, Jennifer J Loros, Tami A Martino, Jerome S Menet, Martha Merrow, Andrew J Millar, Todd Mockler, Felix Naef, Emi Nagoshi, Michael N Nitabach, Maria Olmedo, Dmitri A Nusinow, Louis J Ptáček, David Rand, Akhilesh B Reddy, Maria S Robles, Till Roenneberg, Michael Rosbash, Marc D Ruben, Samuel S C Rund, Aziz Sancar, Paolo Sassone-Corsi, Amita Sehgal, Scott Sherrill-Mix, Debra J Skene, Kai-Florian Storch, Joseph S Takahashi, Hiroki R Ueda, Han Wang, Charles Weitz, Pål O Westermark, Herman Wijnen, Ying Xu, Gang Wu, Seung-Hee Yoo, Michael Young, Eric Erquan Zhang, Tomasz Zielinski, John B HogeneschJournal Of Biological Rhythms2017-11-03
An Intracellular Pathogen Response Pathway Promotes Proteostasis in C. elegans.Kirthi C Reddy, Tal Dror, Jessica N Sowa, Johan Panek, Kevin Chen, Efrem S Lim, David Wang, Emily R TroemelCurrent Biology : CB2017-11-02
A communal catalogue reveals Earth's multiscale microbial diversity.Luke R Thompson, Jon G Sanders, Daniel McDonald, Amnon Amir, Joshua Ladau, Kenneth J Locey, Robert J Prill, Anupriya Tripathi, Sean M Gibbons, Gail Ackermann, Jose A Navas-Molina, Stefan Janssen, Evguenia Kopylova, Yoshiki Vázquez-Baeza, Antonio González, James T Morton, Siavash Mirarab, Zhenjiang Zech Xu, Lingjing Jiang, Mohamed F Haroon, Jad Kanbar, Qiyun Zhu, Se Jin Song, Tomasz Kosciolek, Nicholas A Bokulich, Joshua Lefler, Colin J Brislawn, Gregory Humphrey, Sarah M Owens, Jarrad Hampton-Marcell, Donna Berg-Lyons, Valerie McKenzie, Noah Fierer, Jed A Fuhrman, Aaron Clauset, Rick L Stevens, Ashley Shade, Katherine S Pollard, Kelly D Goodwin, Janet K Jansson, Jack A Gilbert, Rob Knight, Nature2017-11-01
Inter-species population dynamics enhance microbial horizontal gene transfer and spread of antibiotic resistance.Robert M Cooper, Lev Tsimring, Jeff HastyELife2017-11-01
MHC-I Genotype Restricts the Oncogenic Mutational Landscape.Rachel Marty, Saghar Kaabinejadian, David Rossell, Michael J Slifker, Joris van de Haar, Hatice Billur Engin, Nicola de Prisco, Trey Ideker, William H Hildebrand, Joan Font-Burgada, Hannah CarterCell2017-10-26
Urinary Incontinence in Women: A Review.Emily S Lukacz, Yahir Santiago-Lastra, Michael E Albo, Linda BrubakerJAMA2017-10-26
Immunoglobulin A and liver diseases.Tatsuo Inamine, Bernd SchnablJournal Of Gastroenterology2017-10-26
Gut microbiome of mothers delivering prematurely shows reduced diversity and lower relative abundance of Bifidobacterium and Streptococcus.Cecilie Dahl, Maggie Stanislawski, Nina Iszatt, Siddhartha Mandal, Catherine Lozupone, Jose C Clemente, Rob Knight, Hein Stigum, Merete EggesbøPloS One2017-10-25
Guiding longitudinal sampling in IBD cohorts.Yoshiki Vázquez-Baeza, Antonio Gonzalez, Zhenjiang Zech Xu, Alex Washburne, Hans H Herfarth, R Balfour Sartor, Rob KnightGut2017-10-21
SCH79797 improves outcomes in experimental bacterial pneumonia by boosting neutrophil killing and direct antibiotic activity.Naveen Gupta, Roland Liu, Stephanie Shin, Ranjeet Sinha, Joseph Pogliano, Kit Pogliano, John H Griffin, Victor Nizet, Ross CorridenThe Journal Of Antimicrobial Chemotherapy2017-10-19
Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung.Neha Garg, Mingxun Wang, Embriette Hyde, Ricardo R da Silva, Alexey V Melnik, Ivan Protsyuk, Amina Bouslimani, Yan Wei Lim, Richard Wong, Greg Humphrey, Gail Ackermann, Timothy Spivey, Sharon S Brouha, Nuno Bandeira, Grace Y Lin, Forest Rohwer, Douglas J Conrad, Theodore Alexandrov, Rob Knight, Pieter C DorresteinCell Host & Microbe2017-10-19
Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome.Tanja V Maier, Marianna Lucio, Lang Ho Lee, Nathan C VerBerkmoes, Colin J Brislawn, Jörg Bernhardt, Regina Lamendella, Jason E McDermott, Nathalie Bergeron, Silke S Heinzmann, James T Morton, Antonio González, Gail Ackermann, Rob Knight, Katharina Riedel, Ronald M Krauss, Philippe Schmitt-Kopplin, Janet K JanssonMBio2017-10-17
Staphylococcus aureus modulation of innate immune responses through Toll-like (TLR), (NOD)-like (NLR) and C-type lectin (CLR) receptors.Fatemeh Askarian, Theresa Wagner, Mona Johannessen, Victor NizetFEMS Microbiology Reviews2017-10-16
Gastric acid suppression promotes alcoholic liver disease by inducing overgrowth of intestinal Enterococcus.Cristina Llorente, Peter Jepsen, Tatsuo Inamine, Lirui Wang, Sena Bluemel, Hui J Wang, Rohit Loomba, Jasmohan S Bajaj, Mitchell L Schubert, Masoumeh Sikaroodi, Patrick M Gillevet, Jun Xu, Tatiana Kisseleva, Samuel B Ho, Jessica DePew, Xin Du, Henrik T Sørensen, Hendrik Vilstrup, Karen E Nelson, David A Brenner, Derrick E Fouts, Bernd SchnablNature Communications2017-10-16
ELMO1 Regulates Autophagy Induction and Bacterial Clearance During Enteric Infection.Arup Sarkar, Courtney Tindle, Rama F Pranadinata, Sharon Reed, Lars Eckmann, Thaddeus S Stappenbeck, Peter B Ernst, Soumita DasThe Journal Of Infectious Diseases2017-10-14
No Substantial Evidence for Sexual Transmission of Minority HIV Drug Resistance Mutations in Men Who Have Sex with Men.Antoine Chaillon, Masato Nakazawa, Joel O Wertheim, Susan J Little, Davey M Smith, Sanjay R Mehta, Sara GianellaJournal Of Virology2017-10-13
ViFi: accurate detection of viral integration and mRNA fusion reveals indiscriminate and unregulated transcription in proximal genomic regions in cervical cancer.Nam-Phuong D Nguyen, Viraj Deshpande, Jens Luebeck, Paul S Mischel, Vineet BafnaNucleic Acids Research2017-10-13
Global shortage of neonatal and paediatric antibiotic trials: rapid review.Georgina Thompson, Charlotte I Barker, Laura Folgori, Julia A Bielicki, John S Bradley, Irja Lutsar, Mike SharlandBMJ Open2017-10-13
Meta-mass shift chemical profiling of metabolomes from coral reefs.Aaron C Hartmann, Daniel Petras, Robert A Quinn, Ivan Protsyuk, Frederick I Archer, Emma Ransome, Gareth J Williams, Barbara A Bailey, Mark J A Vermeij, Theodore Alexandrov, Pieter C Dorrestein, Forest L RohwerProceedings Of The National Academy Of Sciences Of The United States Of America2017-10-12
Total Synthesis and Biological Assessment of Novel Albicidins Discovered by Mass Spectrometric Networking.Leonard von Eckardstein, Daniel Petras, Tam Dang, Stéphane Cociancich, Souhir Sabri, Stefan Grätz, Dennis Kerwat, Maria Seidel, Alexander Pesic, Pieter C Dorrestein, Monique Royer, John B Weston, Roderich D SüssmuthChemistry (Weinheim An Der Bergstrasse, Germany)2017-10-12
Destabilizing mutations encode nongenetic variation that drives evolutionary innovation.Katherine L Petrie, Nathan D Palmer, Daniel T Johnson, Sarah J Medina, Stephanie J Yan, Victor Li, Alita R Burmeister, Justin R MeyerScience (New York, N.Y.)2017-10-12
iML1515, a knowledgebase that computes Escherichia coli traits.Jonathan M Monk, Colton J Lloyd, Elizabeth Brunk, Nathan Mih, Anand Sastry, Zachary King, Rikiya Takeuchi, Wataru Nomura, Zhen Zhang, Hirotada Mori, Adam M Feist, Bernhard O PalssonNature Biotechnology2017-10-12
An NF-κB-microRNA regulatory network tunes macrophage inflammatory responses.Mati Mann, Arnav Mehta, Jimmy L Zhao, Kevin Lee, Georgi K Marinov, Yvette Garcia-Flores, Li-Fan Lu, Alexander Y Rudensky, David BaltimoreNature Communications2017-10-11
Thermosensitivity of growth is determined by chaperone-mediated proteome reallocation.Ke Chen, Ye Gao, Nathan Mih, Edward J O'Brien, Laurence Yang, Bernhard O PalssonProceedings Of The National Academy Of Sciences Of The United States Of America2017-10-10
Perinatal Bisphenol A Exposure Induces Chronic Inflammation in Rabbit Offspring via Modulation of Gut Bacteria and Their Metabolites.Lavanya Reddivari, D N Rao Veeramachaneni, William A Walters, Catherine Lozupone, Jennifer Palmer, M K Kurundu Hewage, Rohil Bhatnagar, Amnon Amir, Mary J Kennett, Rob Knight, Jairam K P VanamalaMSystems2017-10-10
Evolution of host adaptation in the Salmonella typhoid toxin.Xiang Gao, Lingquan Deng, Gabrielle Stack, Hai Yu, Xi Chen, Yuko Naito-Matsui, Ajit Varki, Jorge E GalánNature Microbiology2017-10-09
Dramatic Differences in Gut Bacterial Densities Correlate with Diet and Habitat in Rainforest Ants.Jon G Sanders, Piotr Lukasik, Megan E Frederickson, Jacob A Russell, Ryuichi Koga, Rob Knight, Naomi E PierceIntegrative And Comparative Biology2017-10-07
The Effects of Captivity on the Mammalian Gut Microbiome.Valerie J McKenzie, Se Jin Song, Frédéric Delsuc, Tiffany L Prest, Angela M Oliverio, Timothy M Korpita, Alexandra Alexiev, Katherine R Amato, Jessica L Metcalf, Martin Kowalewski, Nico L Avenant, Andres Link, Anthony Di Fiore, Andaine Seguin-Orlando, Claudia Feh, Ludovic Orlando, Joseph R Mendelson, Jon Sanders, Rob KnightIntegrative And Comparative Biology2017-10-07
Multigenerational silencing dynamics control cell aging.Yang Li, Meng Jin, Richard O'Laughlin, Philip Bittihn, Lev S Tsimring, Lorraine Pillus, Jeff Hasty, Nan HaoProceedings Of The National Academy Of Sciences Of The United States Of America2017-10-03
Impacts of the Human Gut Microbiome on Therapeutics.Yoshiki Vázquez-Baeza, Chris Callewaert, Justine Debelius, Embriette Hyde, Clarisse Marotz, James T Morton, Austin Swafford, Alison Vrbanac, Pieter C Dorrestein, Rob KnightAnnual Review Of Pharmacology And Toxicology2017-10-02
Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium.Rashmi Sinha, Galeb Abu-Ali, Emily Vogtmann, Anthony A Fodor, Boyu Ren, Amnon Amir, Emma Schwager, Jonathan Crabtree, Siyuan Ma, , Christian C Abnet, Rob Knight, Owen White, Curtis HuttenhowerNature Biotechnology2017-10-02
Commercial hybrids and mutant genotypes reveal complex protective roles for inducible terpenoid defenses in maize.Shawn A Christensen, James Sims, Martha M Vaughan, Charles Hunter, Anna Block, Denis Willett, Hans T Alborn, Alisa Huffaker, Eric A SchmelzJournal Of Experimental Botany2017-09-30
Gut Microbial Diversity in Women With Polycystic Ovary Syndrome Correlates With Hyperandrogenism.Pedro J Torres, Martyna Siakowska, Beata Banaszewska, Leszek Pawelczyk, Antoni J Duleba, Scott T Kelley, Varykina G ThackrayThe Journal Of Clinical Endocrinology And Metabolism2017-09-28
Asymmetric Alkene and Arene Halofunctionalization Reactions in Meroterpenoid Biosynthesis.Bradley S MooreSynlett : Accounts And Rapid Communications In Synthetic Organic Chemistry2017-09-27
Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring.Christopher P Long, Jacqueline E Gonzalez, Adam M Feist, Bernhard O Palsson, Maciek R AntoniewiczMetabolic Engineering2017-09-23
Summary of the 2016 Alcohol and Immunology Research Interest Group (AIRIG) meeting.Lisbeth A Boule, Cynthia Ju, Marisela Agudelo, Tiyash Parira, Abigail Cannon, Booker Davis, Jonathan Eby, Gail Cresci, Derrick R Samuelson, Pradeep Shukla, Waddah A Alrefai, Suhas Sureshchandra, Subhash C Pandey, Bernd Schnabl, Brenda J Curtis, Todd A Wyatt, Mashkoor A Choudhry, Elizabeth J KovacsAlcohol (Fayetteville, N.Y.)2017-09-23
Mass Spectrometry-Based Chemical Cartography of a Cardiac Parasitic Infection.Laura-Isobel McCall, James T Morton, Jean A Bernatchez, Jair Lage de Siqueira-Neto, Rob Knight, Pieter C Dorrestein, James H McKerrowAnalytical Chemistry2017-09-22
Development and Use of Personalized Bacteriophage-Based Therapeutic Cocktails To Treat a Patient with a Disseminated Resistant Acinetobacter baumannii Infection.Robert T Schooley, Biswajit Biswas, Jason J Gill, Adriana Hernandez-Morales, Jacob Lancaster, Lauren Lessor, Jeremy J Barr, Sharon L Reed, Forest Rohwer, Sean Benler, Anca M Segall, Randy Taplitz, Davey M Smith, Kim Kerr, Monika Kumaraswamy, Victor Nizet, Leo Lin, Melanie D McCauley, Steffanie A Strathdee, Constance A Benson, Robert K Pope, Brian M Leroux, Andrew C Picel, Alfred J Mateczun, Katherine E Cilwa, James M Regeimbal, Luis A Estrella, David M Wolfe, Matthew S Henry, Javier Quinones, Scott Salka, Kimberly A Bishop-Lilly, Ry Young, Theron HamiltonAntimicrobial Agents And Chemotherapy2017-09-22
Expanding Single Particle Mass Spectrometer Analyses for the Identification of Microbe Signatures in Sea Spray Aerosol.Camille M Sultana, Hashim Al-Mashat, Kimberly A PratherAnalytical Chemistry2017-09-22
Modeling neuro-immune interactions during Zika virus infection.Pinar Mesci, Angela Macia, Christopher N LaRock, Leon Tejwani, Isabella R Fernandes, Nicole A Suarez, Paolo M de A Zanotto, Patricia C B Beltrão-Braga, Victor Nizet, Alysson R MuotriHuman Molecular Genetics2017-09-21
Denitrification potential of the eastern oyster microbiome using a 16S rRNA gene based metabolic inference approach.Ann Arfken, Bongkeun Song, Jeff S Bowman, Michael PiehlerPloS One2017-09-21
International chicken trade and increased risk for introducing or reintroducing highly pathogenic avian influenza A (H5N1) to uninfected countries.Jennifer M Radin, Richard A Shaffer, Suzanne P Lindsay, Maria Rosario G Araneta, Rema Raman, James H FowlerInfectious Disease Modelling2017-09-21
Extensive orf infection in a toddler with associated id reaction.Ellen S Haddock, Carol E Cheng, John S Bradley, Christopher H Hsu, Hui Zhao, Whitni B Davidson, Victoria R BarrioPediatric Dermatology2017-09-21
Selinene Volatiles Are Essential Precursors for Maize Defense Promoting Fungal Pathogen Resistance.Yezhang Ding, Alisa Huffaker, Tobias G Köllner, Philipp Weckwerth, Christelle A M Robert, Joseph L Spencer, Alexander E Lipka, Eric A SchmelzPlant Physiology2017-09-20
Strains, functions and dynamics in the expanded Human Microbiome Project.Jason Lloyd-Price, Anup Mahurkar, Gholamali Rahnavard, Jonathan Crabtree, Joshua Orvis, A Brantley Hall, Arthur Brady, Heather H Creasy, Carrie McCracken, Michelle G Giglio, Daniel McDonald, Eric A Franzosa, Rob Knight, Owen White, Curtis HuttenhowerNature2017-09-20
Elucidation of complexity and prediction of interactions in microbial communities.Cristal Zuñiga, Livia Zaramela, Karsten ZenglerMicrobial Biotechnology2017-09-19
Environmentally Friendly Procedure Based on Supercritical Fluid Chromatography and Tandem Mass Spectrometry Molecular Networking for the Discovery of Potent Antiviral Compounds from Euphorbia semiperfoliata.Louis-Félix Nothias, Stéphanie Boutet-Mercey, Xavier Cachet, Erick De La Torre, Laurent Laboureur, Jean-François Gallard, Pascal Retailleau, Alain Brunelle, Pieter C Dorrestein, Jean Costa, Luis M Bedoya, Fanny Roussi, Pieter Leyssen, José Alcami, Julien Paolini, Marc Litaudon, David TouboulJournal Of Natural Products2017-09-19
miR-25/93 mediates hypoxia-induced immunosuppression by repressing cGAS.Min-Zu Wu, Wei-Chung Cheng, Su-Feng Chen, Shin Nieh, Carolyn O'Connor, Chia-Lin Liu, Wen-Wei Tsai, Cheng-Jang Wu, Lorena Martin, Yaoh-Shiang Lin, Kou-Juey Wu, Li-Fan Lu, Juan Carlos Izpisua BelmonteNature Cell Biology2017-09-18
Rapid, actionable diagnosis of urban epidemic leptospirosis using a pathogenic Leptospira lipL32-based real-time PCR assay.Irina N Riediger, Robyn A Stoddard, Guilherme S Ribeiro, Sueli M Nakatani, Suzana D R Moreira, Irene Skraba, Alexander W Biondo, Mitermayer G Reis, Alex R Hoffmaster, Joseph M Vinetz, Albert I Ko, Elsio A WunderPLoS Neglected Tropical Diseases2017-09-15
MicroRNA in Immune Regulation.Cheng-Jang Wu, Li-Fan LuCurrent Topics In Microbiology And Immunology2017-09-14
Pharmacokinetics of single-dose ceftaroline fosamil in children with cystic fibrosis.Jennifer Le, John S Bradley, Sara Hingtgen, Shannon Skochko, Nanette Black, Ronald N Jones, Meerana Lim, Edmund V CapparelliPediatric Pulmonology2017-09-14
Erratum to: Diet Versus Phylogeny: a Comparison of Gut Microbiota in Captive Colobine Monkey Species.Vanessa L Hale, Chia L Tan, Kefeng Niu, Yeqin Yang, Rob Knight, Qikun Zhang, Duoying Cui, Katherine R AmatoMicrobial Ecology2017-09-13
Conditional Gene-Targeting in Mice: Problems and Solutions.Burkhard Becher, Ari Waisman, Li-Fan LuImmunity2017-09-12
Systematic Gene-to-Phenotype Arrays: A High-Throughput Technique for Molecular Phenotyping.Philipp A Jaeger, Lilia Ornelas, Cameron McElfresh, Lily R Wong, Randolph Y Hampton, Trey IdekerMolecular Cell2017-09-11
Gut bacteria from multiple sclerosis patients modulate human T cells and exacerbate symptoms in mouse models.Egle Cekanaviciute, Bryan B Yoo, Tessel F Runia, Justine W Debelius, Sneha Singh, Charlotte A Nelson, Rachel Kanner, Yadira Bencosme, Yun Kyung Lee, Stephen L Hauser, Elizabeth Crabtree-Hartman, Ilana Katz Sand, Mar Gacias, Yunjiao Zhu, Patrizia Casaccia, Bruce A C Cree, Rob Knight, Sarkis K Mazmanian, Sergio E BaranziniProceedings Of The National Academy Of Sciences Of The United States Of America2017-09-11
Urinary Symptoms and Their Associations With Urinary Tract Infections in Urogynecologic Patients.Tanaka J Dune, Travis K Price, Evann E Hilt, Krystal J Thomas-White, Stephanie Kliethermes, Cynthia Brincat, Linda Brubaker, Paul Schreckenberger, Alan J Wolfe, Elizabeth R MuellerObstetrics And Gynecology2017-09-09
Diversity-generating retroelements: natural variation, classification and evolution inferred from a large-scale genomic survey.Li Wu, Mari Gingery, Michael Abebe, Diego Arambula, Elizabeth Czornyj, Sumit Handa, Hamza Khan, Minghsun Liu, Mechthild Pohlschroder, Kharissa L Shaw, Amy Du, Huatao Guo, Partho Ghosh, Jeff F Miller, Steven ZimmerlyNucleic Acids Research2017-09-09
International Consensus Statement on Allergy and Rhinology: Allergic Rhinitis.Sarah K Wise, Sandra Y Lin, Elina Toskala, Richard R Orlandi, Cezmi A Akdis, Jeremiah A Alt, Antoine Azar, Fuad M Baroody, Claus Bachert, G Walter Canonica, Thomas Chacko, Cemal Cingi, Giorgio Ciprandi, Jacquelynne Corey, Linda S Cox, Peter Socrates Creticos, Adnan Custovic, Cecelia Damask, Adam DeConde, John M DelGaudio, Charles S Ebert, Jean Anderson Eloy, Carrie E Flanagan, Wytske J Fokkens, Christine Franzese, Jan Gosepath, Ashleigh Halderman, Robert G Hamilton, Hans Jürgen Hoffman, Jens M Hohlfeld, Steven M Houser, Peter H Hwang, Cristoforo Incorvaia, Deborah Jarvis, Ayesha N Khalid, Maritta Kilpeläinen, Todd T Kingdom, Helene Krouse, Desiree Larenas-Linnemann, Adrienne M Laury, Stella E Lee, Joshua M Levy, Amber U Luong, Bradley F Marple, Edward D McCoul, K Christopher McMains, Erik Melén, James W Mims, Gianna Moscato, Joaquim Mullol, Harold S Nelson, Monica Patadia, Ruby Pawankar, Oliver Pfaar, Michael P Platt, William Reisacher, Carmen Rondón, Luke Rudmik, Matthew Ryan, Joaquin Sastre, Rodney J Schlosser, Russell A Settipane, Hemant P Sharma, Aziz Sheikh, Timothy L Smith, Pongsakorn Tantilipikorn, Jody R Tversky, Maria C Veling, De Yun Wang, Marit Westman, Magnus Wickman, Mark ZacharekInternational Forum Of Allergy & Rhinology2017-09-07
Differences in Neurocognitive Impairment Among HIV-Infected Latinos in the United States.María J Marquine, Anne Heaton, Neco Johnson, Monica Rivera-Mindt, Mariana Cherner, Cinnamon Bloss, Todd Hulgan, Anya Umlauf, David J Moore, Pariya Fazeli, Susan Morgello, Donald Franklin, Scott Letendre, Ron Ellis, Ann C Collier, Christina M Marra, David B Clifford, Benjamin B Gelman, Ned Sacktor, David Simpson, J Allen McCutchan, Igor Grant, Robert K HeatonJournal Of The International Neuropsychological Society : JINS2017-09-06
Randomized controlled trial on the impact of early-life intervention with bifidobacteria on the healthy infant fecal microbiota and metabolome.Monika Bazanella, Tanja V Maier, Thomas Clavel, Ilias Lagkouvardos, Marianna Lucio, Maria X Maldonado-Gòmez, Chloe Autran, Jens Walter, Lars Bode, Philippe Schmitt-Kopplin, Dirk HallerThe American Journal Of Clinical Nutrition2017-09-06
Distribution of O-Acetylated Sialic Acids among Target Host Tissues for Influenza Virus.Brian R Wasik, Karen N Barnard, Robert J Ossiboff, Zahra Khedri, Kurtis H Feng, Hai Yu, Xi Chen, Daniel R Perez, Ajit Varki, Colin R ParrishMSphere2017-09-06
Evidence that Human Skin Microbiome Dysbiosis Promotes Atopic Dermatitis.Michael R Williams, Richard L GalloThe Journal Of Investigative Dermatology2017-09-06
Broad-Host-Range Expression Reveals Native and Host Regulatory Elements That Influence Heterologous Antibiotic Production in Gram-Negative Bacteria.Jia Jia Zhang, Xiaoyu Tang, Michelle Zhang, Darlene Nguyen, Bradley S MooreMBio2017-09-05
Global transcriptional regulatory network for robustly connects gene expression to transcription factor activities.Xin Fang, Anand Sastry, Nathan Mih, Donghyuk Kim, Justin Tan, James T Yurkovich, Colton J Lloyd, Ye Gao, Laurence Yang, Bernhard O PalssonProceedings Of The National Academy Of Sciences Of The United States Of America2017-09-05
Enzymatic C-H Oxidation-Amidation Cascade in the Production of Natural and Unnatural Thiotetronate Antibiotics with Potentiated Bioactivity.Jie Li, Xiaoyu Tang, Takayoshi Awakawa, Bradley S MooreAngewandte Chemie (International Ed. In English)2017-09-01
Variation, Indispensability, and Masking in the M protein.Partho GhoshTrends In Microbiology2017-08-31
The Microbiome and the Liver.Bernd SchnablGastroenterology & Hepatology2017-08-29
The Mla pathway is critical for Pseudomonas aeruginosa resistance to outer membrane permeabilization and host innate immune clearance.Jason Munguia, Doris L LaRock, Hannah Tsunemoto, Joshua Olson, Ingrid Cornax, Joseph Pogliano, Victor NizetJournal Of Molecular Medicine (Berlin, Germany)2017-08-26
Influenza NS1 directly modulates Hedgehog signaling during infection.Margery G Smelkinson, Annabel Guichard, John R Teijaro, Meghana Malur, Maria Eugenia Loureiro, Prashant Jain, Sundar Ganesan, Elina I Zúñiga, Robert M Krug, Michael B Oldstone, Ethan BierPLoS Pathogens2017-08-24
Genetic influences on the human oral microbiome.Brittany A Demmitt, Robin P Corley, Brooke M Huibregtse, Matthew C Keller, John K Hewitt, Matthew B McQueen, Rob Knight, Ivy McDermott, Kenneth S KrauterBMC Genomics2017-08-24
Plant elicitor peptides promote plant defences against nematodes in soybean.Min Woo Lee, Alisa Huffaker, Devany Crippen, Robert T Robbins, Fiona L GogginMolecular Plant Pathology2017-08-22
Tamm-Horsfall glycoprotein engages human Siglec-9 to modulate neutrophil activation in the urinary tract.Kathryn A Patras, Alison Coady, Joshua Olson, Syed Raza Ali, Satish P RamachandraRao, Satish Kumar, Ajit Varki, Victor NizetImmunology And Cell Biology2017-08-22
Rapid and Scalable Preparation of Bacterial Lysates for Cell-Free Gene Expression.Andriy Didovyk, Taishi Tonooka, Lev Tsimring, Jeff HastyACS Synthetic Biology2017-08-21
NOT Gate Genetic Circuits to Control Gene Expression in Cyanobacteria.Arnaud Taton, Amy T Ma, Mizuho Ota, Susan S Golden, James W GoldenACS Synthetic Biology2017-08-21
Dysregulated Microbial Fermentation of Soluble Fiber Induces Cholestatic Liver Cancer.Vishal Singh, Beng San Yeoh, Benoit Chassaing, Xia Xiao, Piu Saha, Rodrigo Aguilera Olvera, John D Lapek, Limin Zhang, Wei-Bei Wang, Sijie Hao, Michael D Flythe, David J Gonzalez, Patrice D Cani, Jose R Conejo-Garcia, Na Xiong, Mary J Kennett, Bina Joe, Andrew D Patterson, Andrew T Gewirtz, Matam Vijay-KumarCell2017-08-20
Mechanisms to Evade the Phagocyte Respiratory Burst Arose by Convergent Evolution in Typhoidal Salmonella Serovars.Hirotaka Hiyoshi, Tamding Wangdi, Gabriel Lock, Cheng Saechao, Manuela Raffatellu, Brian A Cobb, Andreas J BäumlerCell Reports2017-08-19
Arylthiazole antibiotics targeting intracellular methicillin-resistant Staphylococcus aureus (MRSA) that interfere with bacterial cell wall synthesis.Islam Eid, Mohamed M Elsebaei, Haroon Mohammad, Mohamed Hagras, Christine E Peters, Youssef A Hegazy, Bruce Cooper, Joe Pogliano, Kit Pogliano, Hamada S Abulkhair, Mohamed N Seleem, Abdelrahman S MayhoubEuropean Journal Of Medicinal Chemistry2017-08-18
Genetic variation in adaptability and pleiotropy in budding yeast.Elizabeth R Jerison, Sergey Kryazhimskiy, James Kameron Mitchell, Joshua S Bloom, Leonid Kruglyak, Michael M DesaiELife2017-08-17
Micromotor-enabled active drug delivery for in vivo treatment of stomach infection.Berta Esteban-Fernández de Ávila, Pavimol Angsantikul, Jinxing Li, Miguel Angel Lopez-Ramirez, Doris E Ramírez-Herrera, Soracha Thamphiwatana, Chuanrui Chen, Jorge Delezuk, Richard Samakapiruk, Valentin Ramez, Marygorret Obonyo, Liangfang Zhang, Joseph WangNature Communications2017-08-16
Function-related replacement of bacterial siderophore pathways.Hilke Bruns, Max Crüsemann, Anne-Catrin Letzel, Mohammad Alanjary, James O McInerney, Paul R Jensen, Stefan Schulz, Bradley S Moore, Nadine ZiemertThe ISME Journal2017-08-15
Genomic insights into specialized metabolism in the marine actinomycete Salinispora.Anne-Catrin Letzel, Jing Li, Gregory C A Amos, Natalie Millán-Aguiñaga, Joape Ginigini, Usama R Abdelmohsen, Susana P Gaudêncio, Nadine Ziemert, Bradley S Moore, Paul R JensenEnvironmental Microbiology2017-08-14
Personalized Risk Index for Neurocognitive Decline Among People With Well-Controlled HIV Infection.Tracy Yuen, Marie-Josée Brouillette, Lesley K Fellows, Ronald J Ellis, Scott Letendre, Robert Heaton, Nancy Mayo, Journal Of Acquired Immune Deficiency Syndromes (1999)2017-08-11
Intrasubtype B HIV-1 Superinfection Correlates with Delayed Neutralizing Antibody Response.Gabriel A Wagner, Elise Landais, Gemma Caballero, Pham Phung, Sergei L Kosakovsky Pond, Pascal Poignard, Douglas D Richman, Susan J Little, Davey M SmithJournal Of Virology2017-08-10
Bacteriological profiling of diphenylureas as a novel class of antibiotics against methicillin-resistant Staphylococcus aureus.Haroon Mohammad, Waleed Younis, Hany G Ezzat, Christine E Peters, Ahmed AbdelKhalek, Bruce Cooper, Kit Pogliano, Joe Pogliano, Abdelrahman S Mayhoub, Mohamed N SeleemPloS One2017-08-10
Leukotriene B-receptor-1 mediated host response shapes gut microbiota and controls colon tumor progression.Venkatakrishna R Jala, Paramahamsa Maturu, Sobha R Bodduluri, Elangovan Krishnan, Steven Mathis, Krishnaprasad Subbarao, Min Wang, Alfred B Jenson, Mary L Proctor, Eric C Rouchka, Rob Knight, Bodduluri HaribabuOncoimmunology2017-08-10
Discovery and Synthesis of Caracolamide A, an Ion Channel Modulating Dichlorovinylidene Containing Phenethylamide from a Panamanian Marine Cyanobacterium cf. Symploca Species.C Benjamin Naman, Jehad Almaliti, Lorene Armstrong, Eduardo J Caro-Díaz, Marsha L Pierce, Evgenia Glukhov, Amanda Fenner, Carmenza Spadafora, Hosana M Debonsi, Pieter C Dorrestein, Thomas F Murray, William H GerwickJournal Of Natural Products2017-08-07
Group A streptococcal M protein activates the NLRP3 inflammasome.J Andrés Valderrama, Angelica M Riestra, Nina J Gao, Christopher N LaRock, Naveen Gupta, Syed Raza Ali, Hal M Hoffman, Partho Ghosh, Victor NizetNature Microbiology2017-08-07
Edible Electrochemistry: Food Materials Based Electrochemical Sensors.Jayoung Kim, Itthipon Jeerapan, Bianca Ciui, Martin C Hartel, Aida Martin, Joseph WangAdvanced Healthcare Materials2017-08-07
Recurrent infection progressively disables host protection against intestinal inflammation.Won Ho Yang, Douglas M Heithoff, Peter V Aziz, Markus Sperandio, Victor Nizet, Michael J Mahan, Jamey D MarthScience (New York, N.Y.)2017-08-04
Saccharomonopyrones A-C, New α-Pyrones from a Marine Sediment-Derived Bacterium Saccharomonospora sp. CNQ-490.Chae-Yoon Yim, Tu Cam Le, Tae Gu Lee, Inho Yang, Hansol Choi, Jusung Lee, Kyung-Yun Kang, Jin Sil Lee, Kyung-Min Lim, Sung-Tae Yee, Heonjoong Kang, Sang-Jip Nam, William FenicalMarine Drugs2017-08-03
Telavancin for refractory MRSA bacteraemia in intermittent haemodialysis recipients.Nicholas S Britt, Samad Tirmizi, David J Ritchie, Jeffrey E Topal, Dayna McManus, Victor Nizet, Ed Casabar, George SakoulasThe Journal Of Antimicrobial Chemotherapy2017-08-02
Intravenous Zanamivir in Hospitalized Patients With Influenza.John S Bradley, Jeffrey L Blumer, José R Romero, Marian G Michaels, Flor M Munoz, David W Kimberlin, Barbara Pahud, Roberta L DeBiasi, Go Yamamoto, Grace Roberts, Mohammad Hossain, Denise Shortino, Phillip J Yates, Bryan Adams, Amanda PeppercornPediatrics2017-08-02
The drug transporter OAT3 (SLC22A8) and endogenous metabolite communication via the gut-liver-kidney axis.Kevin T Bush, Wei Wu, Christina Lun, Sanjay K NigamThe Journal Of Biological Chemistry2017-08-01
PUMA gene delivery to synoviocytes reduces inflammation and degeneration of arthritic joints.Saw-See Hong, Hubert Marotte, Guillaume Courbon, Gary S Firestein, Pierre Boulanger, Pierre MiossecNature Communications2017-07-27
Are humans prone to autoimmunity? Implications from evolutionary changes in hominin sialic acid biology.Ajit VarkiJournal Of Autoimmunity2017-07-26
Development of a Potent Inhibitor of the Plasmodium Proteasome with Reduced Mammalian Toxicity.Gregory M LaMonte, Jehad Almaliti, Betsaida Bibo-Verdugo, Lena Keller, Bing Yu Zou, Jennifer Yang, Yevgeniya Antonova-Koch, Pamela Orjuela-Sanchez, Colleen A Boyle, Edgar Vigil, Lawrence Wang, Gregory M Goldgof, Lena Gerwick, Anthony J O'Donoghue, Elizabeth A Winzeler, William H Gerwick, Sabine OttilieJournal Of Medicinal Chemistry2017-07-25
Bacterial density rather than diversity correlates with hatching success across different avian species.Juan Manuel Peralta-Sánchez, Antonio Manuel Martín-Platero, Laura Wegener-Parfrey, Manuel Martínez-Bueno, Sonia Rodríguez-Ruano, José Antonio Navas-Molina, Yoshiki Vázquez-Baeza, David Martín-Gálvez, Manuel Martín-Vivaldi, Juan Diego Ibáñez-Álamo, Rob Knight, Juan José SolerFEMS Microbiology Ecology2017-07-25
Identification of putative unique immunogenic ZIKV and DENV1-4 peptides for diagnostic cellular based tests.Aaron L Oom, Davey Smith, Kevan AkramiScientific Reports2017-07-24
Reconstructing the regulatory circuit of cell fate determination in yeast mating response.Bin Shao, Haiyu Yuan, Rongfei Zhang, Xuan Wang, Shuwen Zhang, Qi Ouyang, Nan Hao, Chunxiong LuoPLoS Computational Biology2017-07-24
Diet Versus Phylogeny: a Comparison of Gut Microbiota in Captive Colobine Monkey Species.Vanessa L Hale, Chia L Tan, Kefeng Niu, Yeqin Yang, Rob Knight, Qikun Zhang, Duoying Cui, Katherine R AmatoMicrobial Ecology2017-07-22
Germinal center enhancement by extended antigen availability.Kimberly M Cirelli, Shane CrottyCurrent Opinion In Immunology2017-07-21
Erratum for Linz et al., "Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes".Alexandra M Linz, Benjamin C Crary, Ashley Shade, Sarah Owens, Jack A Gilbert, Rob Knight, Katherine D McMahonMSphere2017-07-19
Evolution of organismal stoichiometry in a long-term experiment with .Caroline B Turner, Brian D Wade, Justin R Meyer, Brooke A Sommerfeld, Richard E LenskiRoyal Society Open Science2017-07-19
Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules.Anna Edlund, Neha Garg, Hosein Mohimani, Alexey Gurevich, Xuesong He, Wenyuan Shi, Pieter C Dorrestein, Jeffrey S McLeanMSystems2017-07-18
Imaging mass spectrometry and MS/MS molecular networking reveals chemical interactions among cuticular bacteria and pathogenic fungi associated with fungus-growing ants.Cristopher A Boya P, Hermógenes Fernández-Marín, Luis C Mejía, Carmenza Spadafora, Pieter C Dorrestein, Marcelino GutiérrezScientific Reports2017-07-17
Metabolic Effects of Intermittent Fasting.Ruth E Patterson, Dorothy D SearsAnnual Review Of Nutrition2017-07-17
Molecular inter-kingdom interactions of endophytes isolated from Lychnophora ericoides.Andrés M Caraballo-Rodríguez, Pieter C Dorrestein, Monica T PupoScientific Reports2017-07-14
Opportunities and Challenges for Environmental Exposure Assessment in Population-Based Studies.Chirag J Patel, Jacqueline Kerr, Duncan C Thomas, Bhramar Mukherjee, Beate Ritz, Nilanjan Chatterjee, Marta Jankowska, Juliette Madan, Margaret R Karagas, Kimberly A McAllister, Leah E Mechanic, M Daniele Fallin, Christine Ladd-Acosta, Ian A Blair, Susan L Teitelbaum, Christopher I AmosCancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology2017-07-14
The Dfm1 Derlin Is Required for ERAD Retrotranslocation of Integral Membrane Proteins.Sonya Neal, Philipp A Jaeger, Sascha H Duttke, Christopher Benner, Christopher K Glass, Trey Ideker, Randolph Y HamptonMolecular Cell2017-07-14
Impact of Public Safety Policies on Human Immunodeficiency Virus Transmission Dynamics in Tijuana, Mexico.Sanjay R Mehta, Antoine Chaillon, Tommi L Gaines, Patricia E Gonzalez-Zuniga, Jamila K Stockman, Horatio Almanza-Reyes, Jose Roman Chavez, Alicia Vera, Karla D Wagner, Thomas L Patterson, Brianna Scott, Davey M Smith, Steffanie A StrathdeeClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2017-07-13
The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study.Sian M J Hemmings, Stefanie Malan-Müller, Leigh L van den Heuvel, Brittany A Demmitt, Maggie A Stanislawski, David G Smith, Adam D Bohr, Christopher E Stamper, Embriette R Hyde, James T Morton, Clarisse A Marotz, Philip H Siebler, Maarten Braspenning, Wim Van Criekinge, Andrew J Hoisington, Lisa A Brenner, Teodor T Postolache, Matthew B McQueen, Kenneth S Krauter, Rob Knight, Soraya Seedat, Christopher A LowryPsychosomatic Medicine2017-07-13
Type 4 pili are dispensable for biofilm development in the cyanobacterium Synechococcus elongatus.Elad Nagar, Shaul Zilberman, Eleonora Sendersky, Ryan Simkovsky, Eyal Shimoni, Diana Gershtein, Moshe Herzberg, Susan S Golden, Rakefet SchwarzEnvironmental Microbiology2017-07-13
Synchronized DNA cycling across a bacterial population.Leo Baumgart, William Mather, Jeff HastyNature Genetics2017-07-10
Key Role for the Organic Anion Transporters, OAT1 and OAT3, in the in vivo Handling of Uremic Toxins and Solutes.Wei Wu, Kevin T Bush, Sanjay K NigamScientific Reports2017-07-10
Chromosome Translocation Inflates Bacillus Forespores and Impacts Cellular Morphology.Javier Lopez-Garrido, Nikola Ojkic, Kanika Khanna, Felix R Wagner, Elizabeth Villa, Robert G Endres, Kit PoglianoCell2017-07-07
Intermittent Hypoxia and Hypercapnia Accelerate Atherosclerosis, Partially via Trimethylamine-Oxide.Jin Xue, Dan Zhou, Orit Poulsen, Toshihiro Imamura, Yu-Hsin Hsiao, Travis H Smith, Atul Malhotra, Pieter Dorrestein, Rob Knight, Gabriel G HaddadAmerican Journal Of Respiratory Cell And Molecular Biology2017-07-06
Coupling Targeted and Untargeted Mass Spectrometry for Metabolome-Microbiome-Wide Association Studies of Human Fecal Samples.Alexey V Melnik, Ricardo R da Silva, Embriette R Hyde, Alexander A Aksenov, Fernando Vargas, Amina Bouslimani, Ivan Protsyuk, Alan K Jarmusch, Anupriya Tripathi, Theodore Alexandrov, Rob Knight, Pieter C DorresteinAnalytical Chemistry2017-07-06
SnapShot: Electrochemical Communication in Biofilms.Dong-Yeon D Lee, Arthur Prindle, Jintao Liu, Gürol M SüelCell2017-07-01
What's Normal? Immune Profiling of Human Milk from Healthy Women Living in Different Geographical and Socioeconomic Settings.Lorena Ruiz, Irene Espinosa-Martos, Cristina García-Carral, Susana Manzano, Michelle K McGuire, Courtney L Meehan, Mark A McGuire, Janet E Williams, James Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Linda J Kvist, Gloria E Otoo, Kimberly A Lackey, Katherine Flores, Rossina G Pareja, Lars Bode, Juan M RodríguezFrontiers In Immunology2017-06-30
Enhanced biomass and oxidative stress tolerance of Synechococcus elongatus PCC 7942 overexpressing the DHAR gene from Brassica juncea.Young-Saeng Kim, Il-Sup Kim, Joseph S Boyd, Arnaud Taton, James W Golden, Ho-Sung YoonBiotechnology Letters2017-06-30
Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes.Alexandra M Linz, Benjamin C Crary, Ashley Shade, Sarah Owens, Jack A Gilbert, Rob Knight, Katherine D McMahonMSphere2017-06-28
The Importance of Human Immunodeficiency Virus Research for Transgender and Gender-Nonbinary Individuals.Sara Gianella, J Sonya Haw, Jill Blumenthal, Brooke Sullivan, Davey SmithClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2017-06-28
Interaction of primary mast cells with Borrelia burgdorferi (sensu stricto): role in transmission and dissemination in C57BL/6 mice.Quentin Bernard, Zhenping Wang, Anna Di Nardo, Nathalie BoulangerParasites & Vectors2017-06-27
Extensive horizontal gene transfer in cheese-associated bacteria.Kevin S Bonham, Benjamin E Wolfe, Rachel J DuttonELife2017-06-23
Development of ELISAs for diagnosis of acute typhoid fever in Nigerian children.Jiin Felgner, Aarti Jain, Rie Nakajima, Li Liang, Algis Jasinskas, Eduardo Gotuzzo, Joseph M Vinetz, Fabio Miyajima, Munir Pirmohamed, Fatimah Hassan-Hanga, Dominic Umoru, Binta Wudil Jibir, Safiya Gambo, Kudirat Olateju, Philip L Felgner, Stephen Obaro, D Huw DaviesPLoS Neglected Tropical Diseases2017-06-22
The metabolic potential of the single cell genomes obtained from the Challenger Deep, Mariana Trench within the candidate superphylum Parcubacteria (OD1).Rosa León-Zayas, Logan Peoples, Jennifer F Biddle, Sheila Podell, Mark Novotny, James Cameron, Roger S Lasken, Douglas H BartlettEnvironmental Microbiology2017-06-22
Coupled feedback loops control the stimulus-dependent dynamics of the yeast transcription factor Msn2.Yanfei Jiang, Zohreh AkhavanAghdam, Lev S Tsimring, Nan HaoThe Journal Of Biological Chemistry2017-06-21
Multi-omics Analysis of Periodontal Pocket Microbial Communities Pre- and Posttreatment.Katy J Califf, Karen Schwarzberg-Lipson, Neha Garg, Sean M Gibbons, J Gregory Caporaso, Jørgen Slots, Chloe Cohen, Pieter C Dorrestein, Scott T KelleyMSystems2017-06-20
Laboratory Evolution to Alternating Substrate Environments Yields Distinct Phenotypic and Genetic Adaptive Strategies.Troy E Sandberg, Colton J Lloyd, Bernhard O Palsson, Adam M FeistApplied And Environmental Microbiology2017-06-16
Phylogenomic Insight into Salinispora (Bacteria, Actinobacteria) Species Designations.Natalie Millán-Aguiñaga, Krystle L Chavarria, Juan A Ugalde, Anne-Catrin Letzel, Greg W Rouse, Paul R JensenScientific Reports2017-06-15
DNA Backbone Sulfur-Modification Expands Microbial Growth Range under Multiple Stresses by its anti-oxidation function.Yan Yang, Guanpeng Xu, Jingdan Liang, Ying He, Lei Xiong, Hui Li, Douglas Bartlett, Zixin Deng, Zhijun Wang, Xiang XiaoScientific Reports2017-06-14
Relationships Among Microbial Communities, Maternal Cells, Oligosaccharides, and Macronutrients in Human Milk.Janet E Williams, William J Price, Bahman Shafii, Katherine M Yahvah, Lars Bode, Mark A McGuire, Michelle K McGuireJournal Of Human Lactation : Official Journal Of International Lactation Consultant Association2017-06-13
Foundational and Translational Research Opportunities to Improve Plant Health.Richard Michelmore, Gitta Coaker, Rebecca Bart, Gwyn Beattie, Andrew Bent, Toby Bruce, Duncan Cameron, Jeffery Dangl, Savithramma Dinesh-Kumar, Rob Edwards, Sebastian Eves-van den Akker, Walter Gassmann, Jean T Greenberg, Linda Hanley-Bowdoin, Richard J Harrison, Jagger Harvey, Ping He, Alisa Huffaker, Scot Hulbert, Roger Innes, Jonathan D G Jones, Isgouhi Kaloshian, Sophien Kamoun, Fumiaki Katagiri, Jan Leach, Wenbo Ma, John McDowell, June Medford, Blake Meyers, Rebecca Nelson, Richard Oliver, Yiping Qi, Diane Saunders, Michael Shaw, Christine Smart, Prasanta Subudhi, Lesley Torrance, Bret Tyler, Barbara Valent, John WalshMolecular Plant-microbe Interactions : MPMI2017-06-12
Quantitative Temporal Viromics of an Inducible HIV-1 Model Yields Insight to Global Host Targets and Phospho-Dynamics Associated with Protein Vpr.John D Lapek, Mary K Lewinski, Jacob M Wozniak, John Guatelli, David J GonzalezMolecular & Cellular Proteomics : MCP2017-06-12
A stabilized microbial ecosystem of self-limiting bacteria using synthetic quorum-regulated lysis.Spencer R Scott, M Omar Din, Philip Bittihn, Liyang Xiong, Lev S Tsimring, Jeff HastyNature Microbiology2017-06-12
Reply to Wang and Chen: An ancient origin of magnetotactic bacteria.Wei Lin, Greig A Paterson, Qiyun Zhu, Yinzhao Wang, Evguenia Kopylova, Ying Li, Rob Knight, Dennis A Bazylinski, Rixiang Zhu, Joseph L Kirschvink, Yongxin PanProceedings Of The National Academy Of Sciences Of The United States Of America2017-06-12
Evidence for fungal and chemodenitrification based NO flux from nitrogen impacted coastal sediments.Scott D Wankel, Wiebke Ziebis, Carolyn Buchwald, Chawalit Charoenpong, Dirk de Beer, Jane Dentinger, Zhenjiang Xu, Karsten ZenglerNature Communications2017-06-05
DNA extraction for streamlined metagenomics of diverse environmental samples.Clarisse Marotz, Amnon Amir, Greg Humphrey, James Gaffney, Grant Gogul, Rob KnightBioTechniques2017-06-01
Significant Impacts of Increasing Aridity on the Arid Soil Microbiome.Julia W Neilson, Katy Califf, Cesar Cardona, Audrey Copeland, Will van Treuren, Karen L Josephson, Rob Knight, Jack A Gilbert, Jay Quade, J Gregory Caporaso, Raina M MaierMSystems2017-05-30
Seasonal changes in phosphorus competition and allelopathy of a benthic microbial assembly facilitate prevention of cyanobacterial blooms.Yonghong Wu, Fengwu Wang, Xi Xiao, Junzhuo Liu, Chenxi Wu, Hong Chen, Philip Kerr, Jonathan ShurinEnvironmental Microbiology2017-05-26
Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655.Sang Woo Seo, Ye Gao, Donghyuk Kim, Richard Szubin, Jina Yang, Byung-Kwan Cho, Bernhard O PalssonScientific Reports2017-05-19
Changes in microbial ecology after fecal microbiota transplantation for recurrent C. difficile infection affected by underlying inflammatory bowel disease.Sahil Khanna, Yoshiki Vazquez-Baeza, Antonio González, Sophie Weiss, Bradley Schmidt, David A Muñiz-Pedrogo, John F Rainey, Patricia Kammer, Heidi Nelson, Michael Sadowsky, Alexander Khoruts, Stefan L Farrugia, Rob Knight, Darrell S Pardi, Purna C KashyapMicrobiome2017-05-15
An Elegan(t) Screen for Drug-Microbe Interactions.Alison Vrbanac, Justine W Debelius, Lingjing Jiang, James T Morton, Pieter Dorrestein, Rob KnightCell Host & Microbe2017-05-12
Lodopyridones B and C from a marine sediment-derived bacterium Saccharomonospora sp.Tu Cam Le, Chae-Yoon Yim, Songhee Park, Nikita Katila, Inho Yang, Myoung Chong Song, Yeo Joon Yoon, Dong-Young Choi, Hyukjae Choi, Sang-Jip Nam, William FenicalBioorganic & Medicinal Chemistry Letters2017-05-12
Minimization of the Thiolactomycin Biosynthetic Pathway Reveals that the Cytochrome P450 Enzyme TlmF Is Required for Five-Membered Thiolactone Ring Formation.Xiaoyu Tang, Jie Li, Bradley S MooreChembiochem : A European Journal Of Chemical Biology2017-05-11
A Thiazole Orange Derivative Targeting the Bacterial Protein FtsZ Shows Potent Antibacterial Activity.Ning Sun, Yu-Jing Lu, Fung-Yi Chan, Ruo-Lan Du, Yuan-Yuan Zheng, Kun Zhang, Lok-Yan So, Ruben Abagyan, Chao Zhuo, Yun-Chung Leung, Kwok-Yin WongFrontiers In Microbiology2017-05-11
Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae.Tal Luzzatto-Knaan, Neha Garg, Mingxun Wang, Evgenia Glukhov, Yao Peng, Gail Ackermann, Amnon Amir, Brendan M Duggan, Sergey Ryazanov, Lena Gerwick, Rob Knight, Theodore Alexandrov, Nuno Bandeira, William H Gerwick, Pieter C DorresteinELife2017-05-11
Metabolic Phenotypes of Response to Vaccination in Humans.Shuzhao Li, Nicole L Sullivan, Nadine Rouphael, Tianwei Yu, Sophia Banton, Mohan S Maddur, Megan McCausland, Christopher Chiu, Jennifer Canniff, Sheri Dubey, Ken Liu, ViLinh Tran, Thomas Hagan, Sai Duraisingham, Andreas Wieland, Aneesh K Mehta, Jennifer A Whitaker, Shankar Subramaniam, Dean P Jones, Alessandro Sette, Kalpit Vora, Adriana Weinberg, Mark J Mulligan, Helder I Nakaya, Myron Levin, Rafi Ahmed, Bali PulendranCell2017-05-11
Active Interaction Mapping as a tool to elucidate hierarchical functions of biological processes.Jean-Claude Farré, Michael Kramer, Trey Ideker, Suresh SubramaniAutophagy2017-05-09
The WinCF Model - An Inexpensive and Tractable Microcosm of a Mucus Plugged Bronchiole to Study the Microbiology of Lung Infections.William J Comstock, Edwin Huh, Reiley Weekes, Connor Watson, Tianyang Xu, Pieter C Dorrestein, Robert A QuinnJournal Of Visualized Experiments : JoVE2017-05-08
Development of an animal model of progressive vaccinia in nu/nu mice and the use of bioluminescence imaging for assessment of the efficacy of monoclonal antibodies against vaccinial B5 and L1 proteins.Marina Zaitseva, Antonia Thomas, Clement A Meseda, Charles Y K Cheung, Claudia G Diaz, Yan Xiang, Shane Crotty, Hana GoldingAntiviral Research2017-05-08
Colwellia marinimaniae sp. nov., a hyperpiezophilic species isolated from an amphipod within the Challenger Deep, Mariana Trench.Masataka Kusube, Than S Kyaw, Kumiko Tanikawa, Roger A Chastain, Kevin M Hardy, James Cameron, Douglas H BartlettInternational Journal Of Systematic And Evolutionary Microbiology2017-05-05
Magnitude and Kinetics of Decrease in Liver Stiffness After Antiviral Therapy in Patients With Chronic Hepatitis C: A Systematic Review and Meta-analysis.Siddharth Singh, Antonio Facciorusso, Rohit Loomba, Yngve T Falck-YtterClinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association2017-05-04
Comparison of Fecal Collection Methods for Microbiota Studies in Bangladesh.Emily Vogtmann, Jun Chen, Muhammad G Kibriya, Yu Chen, Tariqul Islam, Mahbubul Eunes, Alauddin Ahmed, Jabun Naher, Anisur Rahman, Amnon Amir, Jianxin Shi, Christian C Abnet, Heidi Nelson, Rob Knight, Nicholas Chia, Habibul Ahsan, Rashmi SinhaApplied And Environmental Microbiology2017-05-01
Systems biology guided by XCMS Online metabolomics.Tao Huan, Erica M Forsberg, Duane Rinehart, Caroline H Johnson, Julijana Ivanisevic, H Paul Benton, Mingliang Fang, Aries Aisporna, Brian Hilmers, Farris L Poole, Michael P Thorgersen, Michael W W Adams, Gregory Krantz, Matthew W Fields, Paul D Robbins, Laura J Niedernhofer, Trey Ideker, Erica L Majumder, Judy D Wall, Nicholas J W Rattray, Royston Goodacre, Luke L Lairson, Gary SiuzdakNature Methods2017-04-28
The Female Urinary Microbiota/Microbiome: Clinical and Research Implications.Linda Brubaker, Alan J WolfeRambam Maimonides Medical Journal2017-04-28
Substrate Profiling and High Resolution Co-complex Crystal Structure of a Secreted C11 Protease Conserved across Commensal Bacteria.Emily J Roncase, Clara Moon, Sandip Chatterjee, Gonzalo E González-Páez, Charles S Craik, Anthony J O'Donoghue, Dennis W WolanACS Chemical Biology2017-04-27
HIV Envelope Glycoform Heterogeneity and Localized Diversity Govern the Initiation and Maturation of a V2 Apex Broadly Neutralizing Antibody Lineage.Elise Landais, Ben Murrell, Bryan Briney, Sasha Murrell, Kimmo Rantalainen, Zachary T Berndsen, Alejandra Ramos, Lalinda Wickramasinghe, Melissa Laird Smith, Kemal Eren, Natalia de Val, Mengyu Wu, Audrey Cappelletti, Jeffrey Umotoy, Yolanda Lie, Terri Wrin, Paul Algate, Po-Ying Chan-Hui, Etienne Karita, , , Andrew B Ward, Ian A Wilson, Dennis R Burton, Davey Smith, Sergei L Kosakovsky Pond, Pascal PoignardImmunity2017-04-19
Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania.Samuel A Smits, Jeff Leach, Erica D Sonnenburg, Carlos G Gonzalez, Joshua S Lichtman, Gregor Reid, Rob Knight, Alphaxard Manjurano, John Changalucha, Joshua E Elias, Maria Gloria Dominguez-Bello, Justin L SonnenburgScience (New York, N.Y.)2017-04-19
Human milk oligosaccharides inhibit growth of group B .Ann E Lin, Chloe A Autran, Alexandra Szyszka, Tamara Escajadillo, Mia Huang, Kamil Godula, Anthony R Prudden, Geert-Jan Boons, Amanda L Lewis, Kelly S Doran, Victor Nizet, Lars BodeThe Journal Of Biological Chemistry2017-04-17
Reply to Comment on "Terrestrial Scavenging of Marine Mammals: Cross-Ecosystem Contaminant Transfer and Potential Risks to Endangered California Condors (Gymnogyps californianus)".Myra E Finkelstein, Victoria J Bakker, Holly Copeland, Joe Burnett, Jennie Jones Scherbinski, Joseph Brandt, Carolyn M KurleEnvironmental Science & Technology2017-04-12
A Novel miR-24-TCF1 Axis in Modulating Effector T Cell Responses.Sunglim Cho, Cheng-Jang Wu, Duc T Nguyen, Ling-Li Lin, Mei-Chi Chen, Aly Azeem Khan, Bi-Huei Yang, Wenxian Fu, Li-Fan LuJournal Of Immunology (Baltimore, Md. : 1950)2017-04-12
Correction for Gonzalez et al., "Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort".Antonio Gonzalez, Embriette Hyde, Naseer Sangwan, Jack A Gilbert, Erik Viirre, Rob KnightMSystems2017-04-11
Human Skin Is the Largest Epithelial Surface for Interaction with Microbes.Richard L GalloThe Journal Of Investigative Dermatology2017-04-08
Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics.Aarash Bordbar, James T Yurkovich, Giuseppe Paglia, Ottar Rolfsson, Ólafur E Sigurjónsson, Bernhard O PalssonScientific Reports2017-04-07
Coupling between distant biofilms and emergence of nutrient time-sharing.Jintao Liu, Rosa Martinez-Corral, Arthur Prindle, Dong-Yeon D Lee, Joseph Larkin, Marçal Gabalda-Sagarra, Jordi Garcia-Ojalvo, Gürol M SüelScience (New York, N.Y.)2017-04-06
The sponge microbiome project.Lucas Moitinho-Silva, Shaun Nielsen, Amnon Amir, Antonio Gonzalez, Gail L Ackermann, Carlo Cerrano, Carmen Astudillo-Garcia, Cole Easson, Detmer Sipkema, Fang Liu, Georg Steinert, Giorgos Kotoulas, Grace P McCormack, Guofang Feng, James J Bell, Jan Vicente, Johannes R Björk, Jose M Montoya, Julie B Olson, Julie Reveillaud, Laura Steindler, Mari-Carmen Pineda, Maria V Marra, Micha Ilan, Michael W Taylor, Paraskevi Polymenakou, Patrick M Erwin, Peter J Schupp, Rachel L Simister, Rob Knight, Robert W Thacker, Rodrigo Costa, Russell T Hill, Susanna Lopez-Legentil, Thanos Dailianis, Timothy Ravasi, Ute Hentschel, Zhiyong Li, Nicole S Webster, Torsten ThomasGigaScience2017-04-05
Expanding the Chemical Repertoire of the Endophyte Streptomyces albospinus RLe7 Reveals Amphotericin B as an Inducer of a Fungal Phenotype.Fernanda Oliveira Chagas, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein, Mônica Tallarico PupoJournal Of Natural Products2017-04-04
Mosquito Microbiome Dynamics, a Background for Prevalence and Seasonality of West Nile Virus.Eva Novakova, Douglas C Woodhams, Sonia M Rodríguez-Ruano, Robert M Brucker, Jonathan W Leff, Amin Maharaj, Amnon Amir, Rob Knight, James ScottFrontiers In Microbiology2017-04-04
Retroelement-guided protein diversification abounds in vast lineages of Bacteria and Archaea.Blair G Paul, David Burstein, Cindy J Castelle, Sumit Handa, Diego Arambula, Elizabeth Czornyj, Brian C Thomas, Partho Ghosh, Jeff F Miller, Jillian F Banfield, David L ValentineNature Microbiology2017-04-03
A Model for Designing Adaptive Laboratory Evolution Experiments.Ryan A LaCroix, Bernhard O Palsson, Adam M FeistApplied And Environmental Microbiology2017-03-31
Cerebrospinal fluid cell-free mitochondrial DNA is associated with HIV replication, iron transport, and mild HIV-associated neurocognitive impairment.Sanjay R Mehta, Josué Pérez-Santiago, Todd Hulgan, Tyler R C Day, Jill Barnholtz-Sloan, Haley Gittleman, Scott Letendre, Ronald Ellis, Robert Heaton, Stephanie Patton, Jesse D Suben, Donald Franklin, Debralee Rosario, David B Clifford, Ann C Collier, Christina M Marra, Benjamin B Gelman, Justin McArthur, Allen McCutchan, Susan Morgello, David Simpson, James Connor, Igor Grant, Asha KallianpurJournal Of Neuroinflammation2017-03-31
Plasma dickkopf-related protein 1, an antagonist of the Wnt pathway, is associated with HIV-associated neurocognitive impairment.Chunjiang Yu, Melanie Seaton, Scott Letendre, Robert Heaton, Lena Al-HarthiAIDS (London, England)2017-03-31
Microbiome Tools for Forensic Science.Jessica L Metcalf, Zhenjiang Z Xu, Amina Bouslimani, Pieter Dorrestein, David O Carter, Rob KnightTrends In Biotechnology2017-03-30
Mass Spectrometry Based Molecular 3D-Cartography of Plant Metabolites.Dimitrios J Floros, Daniel Petras, Clifford A Kapono, Alexey V Melnik, Tie-Jun Ling, Rob Knight, Pieter C DorresteinFrontiers In Plant Science2017-03-29
Short Communication: HIV-1 Transmission Networks Across South Korea.Mi Young Ahn, Joel O Wertheim, Woo Joo Kim, Shin-Woo Kim, Jin Soo Lee, Hea Won Ann, Yongduk Jeon, Jin Young Ahn, Je Eun Song, Dong Hyun Oh, Yong Chan Kim, Eun Jin Kim, In Young Jung, Moo Hyun Kim, Wooyoung Jeong, Su Jin Jeong, Nam Su Ku, June Myung Kim, Davey M Smith, Jun Yong ChoiAIDS Research And Human Retroviruses2017-03-27
Elicitation of Robust Tier 2 Neutralizing Antibody Responses in Nonhuman Primates by HIV Envelope Trimer Immunization Using Optimized Approaches.Matthias Pauthner, Colin Havenar-Daughton, Devin Sok, Joseph P Nkolola, Raiza Bastidas, Archana V Boopathy, Diane G Carnathan, Abishek Chandrashekar, Kimberly M Cirelli, Christopher A Cottrell, Alexey M Eroshkin, Javier Guenaga, Kirti Kaushik, Daniel W Kulp, Jinyan Liu, Laura E McCoy, Aaron L Oom, Gabriel Ozorowski, Kai W Post, Shailendra K Sharma, Jon M Steichen, Steven W de Taeye, Talar Tokatlian, Alba Torrents de la Peña, Salvatore T Butera, Celia C LaBranche, David C Montefiori, Guido Silvestri, Ian A Wilson, Darrell J Irvine, Rogier W Sanders, William R Schief, Andrew B Ward, Richard T Wyatt, Dan H Barouch, Shane Crotty, Dennis R BurtonImmunity2017-03-24
PCR-Independent Method of Transformation-Associated Recombination Reveals the Cosmomycin Biosynthetic Gene Cluster in an Ocean Streptomycete.Charles B Larson, Max Crüsemann, Bradley S MooreJournal Of Natural Products2017-03-23
Skin microbiome and mast cells.Satomi Igawa, Anna Di NardoTranslational Research : The Journal Of Laboratory And Clinical Medicine2017-03-23
Environmental reservoirs of pathogenic mycobacteria across the Ethiopian biogeographical landscape.Hayley C King, Tanya Khera-Butler, Phillip James, Brian B Oakley, Girume Erenso, Abraham Aseffa, Rob Knight, Elizabeth M Wellington, Orin CourtenayPloS One2017-03-23
Ecological implications of hypoxia-triggered shifts in secondary metabolism.Kelley A Gallagher, Greg Wanger, Jane Henderson, Mark Llorente, Chambers C Hughes, Paul R JensenEnvironmental Microbiology2017-03-21
Transcriptional characterization of Vibrio fischeri during colonization of juvenile Euprymna scolopes.Luke R Thompson, Kiel Nikolakakis, Shu Pan, Jennifer Reed, Rob Knight, Edward G RubyEnvironmental Microbiology2017-03-21
Metagenomic discovery of polybrominated diphenyl ether biosynthesis by marine sponges.Vinayak Agarwal, Jessica M Blanton, Sheila Podell, Arnaud Taton, Michelle A Schorn, Julia Busch, Zhenjian Lin, Eric W Schmidt, Paul R Jensen, Valerie J Paul, Jason S Biggs, James W Golden, Eric E Allen, Bradley S MooreNature Chemical Biology2017-03-20
The Microbiome and Human Biology.Rob Knight, Chris Callewaert, Clarisse Marotz, Embriette R Hyde, Justine W Debelius, Daniel McDonald, Mitchell L SoginAnnual Review Of Genomics And Human Genetics2017-03-20
Structural basis of the day-night transition in a bacterial circadian clock.Roger Tseng, Nicolette F Goularte, Archana Chavan, Jansen Luu, Susan E Cohen, Yong-Gang Chang, Joel Heisler, Sheng Li, Alicia K Michael, Sarvind Tripathi, Susan S Golden, Andy LiWang, Carrie L PartchScience (New York, N.Y.)2017-03-16
Phenylthiazole Antibacterial Agents Targeting Cell Wall Synthesis Exhibit Potent Activity in Vitro and in Vivo against Vancomycin-Resistant Enterococci.Haroon Mohammad, Waleed Younis, Lu Chen, Christine E Peters, Joe Pogliano, Kit Pogliano, Bruce Cooper, Jianan Zhang, Abdelrahman Mayhoub, Eric Oldfield, Mark Cushman, Mohamed N SeleemJournal Of Medicinal Chemistry2017-03-15
Bacterial subversion of cAMP signalling inhibits cathelicidin expression, which is required for innate resistance to Mycobacterium tuberculosis.Shashank Gupta, Kathryn Winglee, Richard Gallo, William R BishaiThe Journal Of Pathology2017-03-15
Epigenetic landscapes reveal transcription factors that regulate CD8 T cell differentiation.Bingfei Yu, Kai Zhang, J Justin Milner, Clara Toma, Runqiang Chen, James P Scott-Browne, Renata M Pereira, Shane Crotty, John T Chang, Matthew E Pipkin, Wei Wang, Ananda W GoldrathNature Immunology2017-03-13
Pharmacological Targeting of the Host-Pathogen Interaction: Alternatives to Classical Antibiotics to Combat Drug-Resistant Superbugs.Jason Munguia, Victor NizetTrends In Pharmacological Sciences2017-03-08
Whole-genome analysis of mycobacteria from birds at the San Diego Zoo.Wayne Pfeiffer, Josephine Braun, Jennifer Burchell, Carmel L Witte, Bruce A RideoutPloS One2017-03-07
Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping.Amnon Amir, Daniel McDonald, Jose A Navas-Molina, Justine Debelius, James T Morton, Embriette Hyde, Adam Robbins-Pianka, Rob KnightMSystems2017-03-07
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns.Amnon Amir, Daniel McDonald, Jose A Navas-Molina, Evguenia Kopylova, James T Morton, Zhenjiang Zech Xu, Eric P Kightley, Luke R Thompson, Embriette R Hyde, Antonio Gonzalez, Rob KnightMSystems2017-03-07
Comparative genomics uncovers the prolific and distinctive metabolic potential of the cyanobacterial genus .Tiago Leao, Guilherme Castelão, Anton Korobeynikov, Emily A Monroe, Sheila Podell, Evgenia Glukhov, Eric E Allen, William H Gerwick, Lena GerwickProceedings Of The National Academy Of Sciences Of The United States Of America2017-03-06
Electrostatic Interactions as Mediators in the Allosteric Activation of Protein Kinase A RIα.Emília P Barros, Robert D Malmstrom, Kimya Nourbakhsh, Jason C Del Rio, Alexandr P Kornev, Susan S Taylor, Rommie E AmaroBiochemistry2017-03-06
Intestinal microbiota and nonalcoholic steatohepatitis.Katharina Brandl, Bernd SchnablCurrent Opinion In Gastroenterology2017-03-04
Normalization and microbial differential abundance strategies depend upon data characteristics.Sophie Weiss, Zhenjiang Zech Xu, Shyamal Peddada, Amnon Amir, Kyle Bittinger, Antonio Gonzalez, Catherine Lozupone, Jesse R Zaneveld, Yoshiki Vázquez-Baeza, Amanda Birmingham, Embriette R Hyde, Rob KnightMicrobiome2017-03-03
Neurobehavioral Disturbances During Acute and Early HIV Infection.Rujvi Kamat, Katie L Doyle, Jennifer E Iudicello, Erin E Morgan, Sheldon Morris, Davey M Smith, Susan J Little, Igor Grant, Steven Paul Woods, Cognitive And Behavioral Neurology : Official Journal Of The Society For Behavioral And Cognitive Neurology2017-03-01
Dynamic of CSF and serum biomarkers in HIV-1 subtype C encephalitis with CNS genetic compartmentalization-case study.Sergio M de Almeida, Indianara Rotta, Clea E Ribeiro, Michelli F Oliveira, Antoine Chaillon, Ana Paula de Pereira, Ana Paula Cunha, Marise Zonta, Joao França Bents, Sonia M Raboni, Davey Smith, Scott Letendre, Ronald J EllisJournal Of Neurovirology2017-02-28
Lyophilized visually readable loop-mediated isothermal reverse transcriptase nucleic acid amplification test for detection Ebola Zaire RNA.Christoph Carter, Kevan Akrami, Drew Hall, Davey Smith, Eliah Aronoff-SpencerJournal Of Virological Methods2017-02-24
Gut-liver axis at the frontier of host-microbial interactions.Katharina Brandl, Vipin Kumar, Lars EckmannAmerican Journal Of Physiology. Gastrointestinal And Liver Physiology2017-02-23
Evidence To Support Continuation of Statin Therapy in Patients with Staphylococcus aureus Bacteremia.Aisling R Caffrey, Tristan T Timbrook, Eunsun Noh, George Sakoulas, Steven M Opal, Victor Nizet, Kerry L LaPlanteAntimicrobial Agents And Chemotherapy2017-02-23
Depressive symptoms in HIV-infected and seronegative control subjects in Cameroon: Effect of age, education and gender.Georgette D Kanmogne, Fang Qiu, Félicien E Ntone, Julius Y Fonsah, Dora M Njamnshi, Callixte T Kuate, Roland F Doh, Anne M Kengne, Claude T Tagny, Emilienne Nchindap, Léopoldine Kenmogne, Dora Mbanya, Mariana Cherner, Robert K Heaton, Alfred K NjamnshiPloS One2017-02-23
Spatiotemporal dynamics of HIV-1 transmission in France (1999-2014) and impact of targeted prevention strategies.Antoine Chaillon, Asma Essat, Pierre Frange, Davey M Smith, Constance Delaugerre, Francis Barin, Jade Ghosn, Gilles Pialoux, Olivier Robineau, Christine Rouzioux, Cécile Goujard, Laurence Meyer, Marie-Laure Chaix, Retrovirology2017-02-21
Group A Streptococcal M1 Protein Provides Resistance against the Antimicrobial Activity of Histones.Simon Döhrmann, Christopher N LaRock, Ericka L Anderson, Jason N Cole, Brinda Ryali, Chelsea Stewart, Poochit Nonejuie, Joe Pogliano, Ross Corriden, Partho Ghosh, Victor NizetScientific Reports2017-02-21
Uncovering the Horseshoe Effect in Microbial Analyses.James T Morton, Liam Toran, Anna Edlund, Jessica L Metcalf, Christian Lauber, Rob KnightMSystems2017-02-21
Hepatitis B Reactivation Associated With Immune Suppressive and Biological Modifier Therapies: Current Concepts, Management Strategies, and Future Directions.Rohit Loomba, T Jake LiangGastroenterology2017-02-20
Oxidative Stress Resulting From Infection Contributes to Gastric Carcinogenesis.Lindsay D Butcher, Gerco den Hartog, Peter B Ernst, Sheila E CroweCellular And Molecular Gastroenterology And Hepatology2017-02-20
Targeting proteasomes in infectious organisms to combat disease.Betsaida Bibo-Verdugo, Zhenze Jiang, Conor R Caffrey, Anthony J O'DonoghueThe FEBS Journal2017-02-16
Effect of myeloid differentiation primary response gene 88 on expression profiles of genes during the development and progression of Helicobacter-induced gastric cancer.Ivonne Lozano-Pope, Arnika Sharma, Michael Matthias, Kelly S Doran, Marygorret ObonyoBMC Cancer2017-02-15
Daptomycin for Complicated Skin Infections: A Randomized Trial.John Bradley, Chad Glasser, Hernando Patino, Sandra R Arnold, Antonio Arrieta, Blaise Congeni, Robert S Daum, Tsoline Kojaoghlanian, Minjung Yoon, Diane Anastasiou, Dominik J Wolf, Paula BokeschPediatrics2017-02-15
Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome.Erin M Hill-Burns, Justine W Debelius, James T Morton, William T Wissemann, Matthew R Lewis, Zachary D Wallen, Shyamal D Peddada, Stewart A Factor, Eric Molho, Cyrus P Zabetian, Rob Knight, Haydeh PayamiMovement Disorders : Official Journal Of The Movement Disorder Society2017-02-14
Origin of microbial biomineralization and magnetotaxis during the Archean.Wei Lin, Greig A Paterson, Qiyun Zhu, Yinzhao Wang, Evguenia Kopylova, Ying Li, Rob Knight, Dennis A Bazylinski, Rixiang Zhu, Joseph L Kirschvink, Yongxin PanProceedings Of The National Academy Of Sciences Of The United States Of America2017-02-13
Dynamics of the human gut microbiome in inflammatory bowel disease.Jonas Halfvarson, Colin J Brislawn, Regina Lamendella, Yoshiki Vázquez-Baeza, William A Walters, Lisa M Bramer, Mauro D'Amato, Ferdinando Bonfiglio, Daniel McDonald, Antonio Gonzalez, Erin E McClure, Mitchell F Dunklebarger, Rob Knight, Janet K JanssonNature Microbiology2017-02-13
AICAR ameliorates high-fat diet-associated pathophysiology in mouse and ex vivo models, independent of adiponectin.Emma Börgeson, Ville Wallenius, Gulam H Syed, Manjula Darshi, Juan Lantero Rodriguez, Christina Biörserud, Malin Ragnmark Ek, Per Björklund, Marianne Quiding-Järbrink, Lars Fändriks, Catherine Godson, Kumar SharmaDiabetologia2017-02-10
High-throughput single-cell analysis for the proteomic dynamics study of the yeast osmotic stress response.Rongfei Zhang, Haiyu Yuan, Shujing Wang, Qi Ouyang, Yong Chen, Nan Hao, Chunxiong LuoScientific Reports2017-02-09
Massively parallel digital high resolution melt for rapid and absolutely quantitative sequence profiling.Daniel Ortiz Velez, Hannah Mack, Julietta Jupe, Sinead Hawker, Ninad Kulkarni, Behnam Hedayatnia, Yang Zhang, Shelley Lawrence, Stephanie I FraleyScientific Reports2017-02-08
Microbiome precision editing: Using PEG as a selective fermentation initiator against methicillin-resistant Staphylococcus aureus.Ming-Shan Kao, Stephen Huang, Wei-Lin Chang, Ming-Fa Hsieh, Chun-Jen Huang, Richard L Gallo, Chun-Ming HuangBiotechnology Journal2017-02-08
Selective Whole-Genome Amplification Is a Robust Method That Enables Scalable Whole-Genome Sequencing of Plasmodium vivax from Unprocessed Clinical Samples.Annie N Cowell, Dorothy E Loy, Sesh A Sundararaman, Hugo Valdivia, Kathleen Fisch, Andres G Lescano, G Christian Baldeviano, Salomon Durand, Vince Gerbasi, Colin J Sutherland, Debbie Nolder, Joseph M Vinetz, Beatrice H Hahn, Elizabeth A WinzelerMBio2017-02-07
Thy-1 interaction with Fas in lipid rafts regulates fibroblast apoptosis and lung injury resolution.Xiaoqiu Liu, Simon S Wong, Carmen A Taype, Jeeyeon Kim, Tzu-Pin Shentu, Celia R Espinoza, J Cameron Finley, John E Bradley, Brian P Head, Hemal H Patel, Emma J Mah, James S HagoodLaboratory Investigation; A Journal Of Technical Methods And Pathology2017-02-06
Loss of CMAH during Human Evolution Primed the Monocyte-Macrophage Lineage toward a More Inflammatory and Phagocytic State.Jonathan J Okerblom, Flavio Schwarz, Josh Olson, William Fletes, Syed Raza Ali, Paul T Martin, Christopher K Glass, Victor Nizet, Ajit VarkiJournal Of Immunology (Baltimore, Md. : 1950)2017-02-01
Effects of Actinomycete Secondary Metabolites on Sediment Microbial Communities.Nastassia V Patin, Michelle Schorn, Kristen Aguinaldo, Tommie Lincecum, Bradley S Moore, Paul R JensenApplied And Environmental Microbiology2017-02-01
Tfh cells and HIV bnAbs, an immunodominance model of the HIV neutralizing antibody generation problem.Colin Havenar-Daughton, Jeong Hyun Lee, Shane CrottyImmunological Reviews2017-01-31
The differential ability of asparagine and glutamine in promoting the closed/active enzyme conformation rationalizes the Wolinella succinogenes L-asparaginase substrate specificity.Hien Anh Nguyen, Donald L Durden, Arnon LavieScientific Reports2017-01-31
Chitosan-based water-propelled micromotors with strong antibacterial activity.Jorge A M Delezuk, Doris E Ramírez-Herrera, Berta Esteban-Fernández de Ávila, Joseph WangNanoscale2017-01-31
YAP-IL-6ST autoregulatory loop activated on APC loss controls colonic tumorigenesis.Koji Taniguchi, Toshiro Moroishi, Petrus R de Jong, Michal Krawczyk, Britta Moyo Grebbin, Huiyan Luo, Rui-Hua Xu, Nicole Golob-Schwarzl, Caroline Schweiger, Kepeng Wang, Giuseppe Di Caro, Ying Feng, Eric R Fearon, Eyal Raz, Lukas Kenner, Henner F Farin, Kun-Liang Guan, Johannes Haybaeck, Christian Datz, Kang Zhang, Michael KarinProceedings Of The National Academy Of Sciences Of The United States Of America2017-01-27
Copper toxicity response influences mesotrophic Synechococcus community structure.Rhona K Stuart, Randelle Bundy, Kristen Buck, Majid Ghassemain, Kathy Barbeau, Brian PalenikEnvironmental Microbiology2017-01-26
Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy.Michael H Kramer, Jean-Claude Farré, Koyel Mitra, Michael Ku Yu, Keiichiro Ono, Barry Demchak, Katherine Licon, Mitchell Flagg, Rama Balakrishnan, J Michael Cherry, Suresh Subramani, Trey IdekerMolecular Cell2017-01-26
Patterns in Gut Microbiota Similarity Associated with Degree of Sociality among Sex Classes of a Neotropical Primate.Katherine R Amato, Sarie Van Belle, Anthony Di Fiore, Alejandro Estrada, Rebecca Stumpf, Bryan White, Karen E Nelson, Rob Knight, Steven R LeighMicrobial Ecology2017-01-26
Blood Group Antigen Recognition via the Group A Streptococcal M Protein Mediates Host Colonization.David M P De Oliveira, Lauren Hartley-Tassell, Arun Everest-Dass, Christopher J Day, Rebecca A Dabbs, Thomas Ve, Bostjan Kobe, Victor Nizet, Nicolle H Packer, Mark J Walker, Michael P Jennings, Martina L Sanderson-SmithMBio2017-01-24
Classical β-Lactamase Inhibitors Potentiate the Activity of Daptomycin against Methicillin-Resistant Staphylococcus aureus and Colistin against Acinetobacter baumannii.George Sakoulas, Warren Rose, Andrew Berti, Joshua Olson, Jason Munguia, Poochit Nonejuie, Eleanna Sakoulas, Michael J Rybak, Joseph Pogliano, Victor NizetAntimicrobial Agents And Chemotherapy2017-01-24
Paired Siglec receptors generate opposite inflammatory responses to a human-specific pathogen.Flavio Schwarz, Corinna S Landig, Shoib Siddiqui, Ismael Secundino, Joshua Olson, Nissi Varki, Victor Nizet, Ajit VarkiThe EMBO Journal2017-01-18
Balance Trees Reveal Microbial Niche Differentiation.James T Morton, Jon Sanders, Robert A Quinn, Daniel McDonald, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Jose A Navas-Molina, Se Jin Song, Jessica L Metcalf, Embriette R Hyde, Manuel Lladser, Pieter C Dorrestein, Rob KnightMSystems2017-01-17
Influence of the microbiota on host physiology - moving beyond the gut.Kim E Barrett, Gary D WuThe Journal Of Physiology2017-01-14
Bringing the Dynamic Microbiome to Life with Animations.Yoshiki Vázquez-Baeza, Antonio Gonzalez, Larry Smarr, Daniel McDonald, James T Morton, Jose A Navas-Molina, Rob KnightCell Host & Microbe2017-01-13
Species-Independent Attraction to Biofilms through Electrical Signaling.Jacqueline Humphries, Liyang Xiong, Jintao Liu, Arthur Prindle, Fang Yuan, Heidi A Arjes, Lev Tsimring, Gürol M SüelCell2017-01-12
Suppression of Beneficial Mutations in Dynamic Microbial Populations.Philip Bittihn, Jeff Hasty, Lev S TsimringPhysical Review Letters2017-01-12
Fatty Acid Biosynthesis Pathways in .Aleksandr Demidenko, Ilya R Akberdin, Marco Allemann, Eric E Allen, Marina G KalyuzhnayaFrontiers In Microbiology2017-01-10
Whole-Genome Sequencing of Invasion-Resistant Cells Identifies Laminin α2 as a Host Factor for Bacterial Invasion.Xander M van Wijk, Simon Döhrmann, Björn M Hallström, Shangzhong Li, Bjørn G Voldborg, Brandon X Meng, Karen K McKee, Toin H van Kuppevelt, Peter D Yurchenco, Bernhard O Palsson, Nathan E Lewis, Victor Nizet, Jeffrey D EskoMBio2017-01-10
Dietary Prebiotics and Bioactive Milk Fractions Improve NREM Sleep, Enhance REM Sleep Rebound and Attenuate the Stress-Induced Decrease in Diurnal Temperature and Gut Microbial Alpha Diversity.Robert S Thompson, Rachel Roller, Agnieszka Mika, Benjamin N Greenwood, Rob Knight, Maciej Chichlowski, Brian M Berg, Monika FleshnerFrontiers In Behavioral Neuroscience2017-01-10
Redox crisis underlies conditional light-dark lethality in cyanobacterial mutants that lack the circadian regulator, RpaA.Spencer Diamond, Benjamin E Rubin, Ryan K Shultzaberger, You Chen, Chase D Barber, Susan S GoldenProceedings Of The National Academy Of Sciences Of The United States Of America2017-01-10
Potent Inhibition of Monoamine Oxidase B by a Piloquinone from Marine-Derived sp. CNQ-027.Hyun Woo Lee, Hansol Choi, Sang-Jip Nam, William Fenical, Hoon KimJournal Of Microbiology And Biotechnology2017-01-10
Advances in Engineering the Fly Genome with the CRISPR-Cas System.Ethan Bier, Melissa M Harrison, Kate M O'Connor-Giles, Jill WildongerGenetics2017-01-09
Social and Genetic Networks of HIV-1 Transmission in New York City.Joel O Wertheim, Sergei L Kosakovsky Pond, Lisa A Forgione, Sanjay R Mehta, Ben Murrell, Sharmila Shah, Davey M Smith, Konrad Scheffler, Lucia V TorianPLoS Pathogens2017-01-09
Identification of microsporidia host-exposed proteins reveals a repertoire of rapidly evolving proteins.Aaron W Reinke, Keir M Balla, Eric J Bennett, Emily R TroemelNature Communications2017-01-09
Measuring Success in Global Health Training: Data From 14 Years of a Postdoctoral Fellowship in Infectious Diseases and Tropical Medicine.Joseph D Tucker, Molly A Hughes, Ravi V Durvasula, Joseph M Vinetz, Victoria P McGovern, Rhonda Schultz, Claire Panosian Dunavan, Mary E Wilson, Danny A Milner, Regina C LaRocque, Stephen B Calderwood, Richard L Guerrant, Peter F Weller, Terrie E TaylorClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2017-01-09
Molecular Features of the V1-V4 Coding Region of Sexually Transmitted Human Immunodeficiency Virus Type 1.Jun Yong Choi, Sergei L Kosakovsky Pond, Christy M Anderson, Douglas D Richman, Davey M SmithThe Journal Of Infectious Diseases2017-01-03
Early Antiretroviral Therapy Is Associated with Lower HIV DNA Molecular Diversity and Lower Inflammation in Cerebrospinal Fluid but Does Not Prevent the Establishment of Compartmentalized HIV DNA Populations.Michelli F Oliveira, Antoine Chaillon, Masato Nakazawa, Milenka Vargas, Scott L Letendre, Matthew C Strain, Ronald J Ellis, Sheldon Morris, Susan J Little, Davey M Smith, Sara GianellaPLoS Pathogens2017-01-03
Serine-Aspartate Repeat Protein D Increases Staphylococcus aureus Virulence and Survival in Blood.Fatemeh Askarian, Satoshi Uchiyama, J Andrés Valderrama, Clement Ajayi, Johanna U E Sollid, Nina M van Sorge, Victor Nizet, Jos A G van Strijp, Mona JohannessenInfection And Immunity2016-12-29
Calcium Enhances Bile Salt-Dependent Virulence Activation in Vibrio cholerae.Amanda J Hay, Menghua Yang, Xiaoyun Xia, Zhi Liu, Justin Hammons, William Fenical, Jun ZhuInfection And Immunity2016-12-29
Phase I Clinical Trial Results of Auranofin, a Novel Antiparasitic Agent.Edmund V Capparelli, Robin Bricker-Ford, M John Rogers, James H McKerrow, Sharon L ReedAntimicrobial Agents And Chemotherapy2016-12-27
Collective Resistance in Microbial Communities by Intracellular Antibiotic Deactivation.Robin A Sorg, Leo Lin, G Sander van Doorn, Moritz Sorg, Joshua Olson, Victor Nizet, Jan-Willem VeeningPLoS Biology2016-12-27
Human Milk Oligosaccharides and the Preterm Infant: A Journey in Sickness and in Health.Sara Moukarzel, Lars BodeClinics In Perinatology2016-12-27
Etravirine and Rilpivirine Drug Resistance Among HIV-1 Subtype C Infected Children Failing Non-Nucleoside Reverse Transcriptase Inhibitor-Based Regimens in South India.Shanmugam Saravanan, Bagavathi Kausalya, Selvamurthi Gomathi, Sathasivam Sivamalar, Balakrishnan Pachamuthu, Poongulali Selvamuthu, Amrose Pradeep, Solomon Sunil, Sarvode N Mothi, Davey M Smith, Rami KantorAIDS Research And Human Retroviruses2016-12-23
Rapid Chagas Disease Drug Target Discovery Using Directed Evolution in Drug-Sensitive Yeast.Sabine Ottilie, Gregory M Goldgof, Claudia Magalhaes Calvet, Gareth K Jennings, Greg LaMonte, Jake Schenken, Edgar Vigil, Prianka Kumar, Laura-Isobel McCall, Eduardo Soares Constantino Lopes, Felicia Gunawan, Jennifer Yang, Yo Suzuki, Jair L Siqueira-Neto, James H McKerrow, Rommie E Amaro, Larissa M Podust, Jacob D Durrant, Elizabeth A WinzelerACS Chemical Biology2016-12-23
Spatial Molecular Architecture of the Microbial Community of a Lichen.Neha Garg, Yi Zeng, Anna Edlund, Alexey V Melnik, Laura M Sanchez, Hosein Mohimani, Alexey Gurevich, Vivian Miao, Stefan Schiffler, Yan Wei Lim, Tal Luzzatto-Knaan, Shengxin Cai, Forest Rohwer, Pavel A Pevzner, Robert H Cichewicz, Theodore Alexandrov, Pieter C DorresteinMSystems2016-12-20
Bidirectional Communication between Liver and Gut during Alcoholic Liver Disease.Peter Stärkel, Bernd SchnablSeminars In Liver Disease2016-12-20
Intestinal adaptation in proximal and distal segments: Two epithelial responses diverge after intestinal separation.Kathy A Schall, Kathleen A Holoyda, Mubina Isani, Christopher Schlieve, Tasha Salisbury, Thien Khuu, Justine W Debelius, Rex A Moats, Harvey A Pollack, Ching-Ling Lien, Kathryn Fowler, Xiaogang Hou, Rob Knight, Tracy C GrikscheitSurgery2016-12-20
Diets high in resistant starch increase plasma levels of trimethylamine-N-oxide, a gut microbiome metabolite associated with CVD risk.Nathalie Bergeron, Paul T Williams, Regina Lamendella, Nastaran Faghihnia, Alyssa Grube, Xinmin Li, Zeneng Wang, Rob Knight, Janet K Jansson, Stanley L Hazen, Ronald M KraussThe British Journal Of Nutrition2016-12-20
Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B.Ke Shi, Michael A Carpenter, Surajit Banerjee, Nadine M Shaban, Kayo Kurahashi, Daniel J Salamango, Jennifer L McCann, Gabriel J Starrett, Justin V Duffy, Özlem Demir, Rommie E Amaro, Daniel A Harki, Reuben S Harris, Hideki AiharaNature Structural & Molecular Biology2016-12-19
Vulvodynia: What We Know and Where We Should Be Going.Logan M Havemann, David R Cool, Pascal Gagneux, Michael P Markey, Jerome L Yaklic, Rose A Maxwell, Ashvin Iyer, Steven R LindheimJournal Of Lower Genital Tract Disease2016-12-17
Identification of Two New HIV-1 Circulating Recombinant Forms (CRF87_cpx and CRF88_BC) from Reported Unique Recombinant Forms in Asia.Yihong Hu, Zhenzhou Wan, Yan-Heng Zhou, Davey Smith, Yong-Tang Zheng, Chiyu ZhangAIDS Research And Human Retroviruses2016-12-13
Literature mining supports a next-generation modeling approach to predict cellular byproduct secretion.Zachary A King, Edward J O'Brien, Adam M Feist, Bernhard O PalssonMetabolic Engineering2016-12-13
A Large Collection of Novel Nematode-Infecting Microsporidia and Their Diverse Interactions with Caenorhabditis elegans and Other Related Nematodes.Gaotian Zhang, Martin Sachse, Marie-Christine Prevost, Robert J Luallen, Emily R Troemel, Marie-Anne FélixPLoS Pathogens2016-12-12
A Chemical Biology Solution to Problems with Studying Biologically Important but Unstable 9-O-Acetyl Sialic Acids.Zahra Khedri, An Xiao, Hai Yu, Corinna Susanne Landig, Wanqing Li, Sandra Diaz, Brian R Wasik, Colin R Parrish, Lee-Ping Wang, Ajit Varki, Xi ChenACS Chemical Biology2016-12-12
Assembly of long error-prone reads using de Bruijn graphs.Yu Lin, Jeffrey Yuan, Mikhail Kolmogorov, Max W Shen, Mark Chaisson, Pavel A PevznerProceedings Of The National Academy Of Sciences Of The United States Of America2016-12-12
Use of plankton-derived vitamin B1 precursors, especially thiazole-related precursor, by key marine picoeukaryotic phytoplankton.Ryan W Paerl, Francois-Yves Bouget, Jean-Claude Lozano, Valérie Vergé, Philippe Schatt, Eric E Allen, Brian Palenik, Farooq AzamThe ISME Journal2016-12-09
Antibiotic discovery is a walk in the park.Louis-Félix Nothias, Rob Knight, Pieter C DorresteinProceedings Of The National Academy Of Sciences Of The United States Of America2016-12-09
Machine learning in computational biology to accelerate high-throughput protein expression.Anand Sastry, Jonathan Monk, Hanna Tegel, Mathias Uhlen, Bernhard O Palsson, Johan Rockberg, Elizabeth BrunkBioinformatics (Oxford, England)2016-12-08
Rapidly evolving homing CRISPR barcodes.Reza Kalhor, Prashant Mali, George M ChurchNature Methods2016-12-05
Transmission of viruses via our microbiomes.Melissa Ly, Marcus B Jones, Shira R Abeles, Tasha M Santiago-Rodriguez, Jonathan Gao, Ivan C Chan, Chandrabali Ghose, David T PrideMicrobiome2016-12-02
Ecological networking of cystic fibrosis lung infections.Robert A Quinn, Katrine Whiteson, Yan Wei Lim, Jiangchao Zhao, Douglas Conrad, John J LiPuma, Forest Rohwer, Stefanie WidderNPJ Biofilms And Microbiomes2016-12-02
Unique attributes of cyanobacterial metabolism revealed by improved genome-scale metabolic modeling and essential gene analysis.Jared T Broddrick, Benjamin E Rubin, David G Welkie, Niu Du, Nathan Mih, Spencer Diamond, Jenny J Lee, Susan S Golden, Bernhard O PalssonProceedings Of The National Academy Of Sciences Of The United States Of America2016-12-01
The Critical and Multifunctional Roles of Antimicrobial Peptides in Dermatology.Toshiya Takahashi, Richard L GalloDermatologic Clinics2016-11-29
Classification of Chronic Rhinosinusitis-Working Toward Personalized Diagnosis.Adam S DeConde, Timothy L SmithOtolaryngologic Clinics Of North America2016-11-28
Ecological speciation of bacteriophage lambda in allopatry and sympatry.Justin R Meyer, Devin T Dobias, Sarah J Medina, Lisa Servilio, Animesh Gupta, Richard E LenskiScience (New York, N.Y.)2016-11-24
Natural products as mediators of disease.Neha Garg, Tal Luzzatto-Knaan, Alexey V Melnik, Andrés Mauricio Caraballo-Rodríguez, Dimitrios J Floros, Daniel Petras, Rachel Gregor, Pieter C Dorrestein, Vanessa V PhelanNatural Product Reports2016-11-22
Evasion of Neutrophil Extracellular Traps by Respiratory Pathogens.Daniel M L Storisteanu, Joanna M Pocock, Andrew S Cowburn, Jatinder K Juss, Angalee Nadesalingam, Victor Nizet, Edwin R ChilversAmerican Journal Of Respiratory Cell And Molecular Biology2016-11-18
Principles of proteome allocation are revealed using proteomic data and genome-scale models.Laurence Yang, James T Yurkovich, Colton J Lloyd, Ali Ebrahim, Michael A Saunders, Bernhard O PalssonScientific Reports2016-11-18
Cell-wall remodeling drives engulfment during sporulation.Nikola Ojkic, Javier López-Garrido, Kit Pogliano, Robert G EndresELife2016-11-17
Family-wide Structural Characterization and Genomic Comparisons Decode the Diversity-oriented Biosynthesis of Thalassospiramides by Marine Proteobacteria.Weipeng Zhang, Liang Lu, Qiliang Lai, Beika Zhu, Zhongrui Li, Ying Xu, Zongze Shao, Karl Herrup, Bradley S Moore, Avena C Ross, Pei-Yuan QianThe Journal Of Biological Chemistry2016-11-14
Lifestyle chemistries from phones for individual profiling.Amina Bouslimani, Alexey V Melnik, Zhenjiang Xu, Amnon Amir, Ricardo R da Silva, Mingxun Wang, Nuno Bandeira, Theodore Alexandrov, Rob Knight, Pieter C DorresteinProceedings Of The National Academy Of Sciences Of The United States Of America2016-11-14
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.Robert M Bowers, Nikos C Kyrpides, Ramunas Stepanauskas, Miranda Harmon-Smith, Devin Doud, T B K Reddy, Frederik Schulz, Jessica Jarett, Adam R Rivers, Emiley A Eloe-Fadrosh, Susannah G Tringe, Natalia N Ivanova, Alex Copeland, Alicia Clum, Eric D Becraft, Rex R Malmstrom, Bruce Birren, Mircea Podar, Peer Bork, George M Weinstock, George M Garrity, Jeremy A Dodsworth, Shibu Yooseph, Granger Sutton, Frank O Glöckner, Jack A Gilbert, William C Nelson, Steven J Hallam, Sean P Jungbluth, Thijs J G Ettema, Scott Tighe, Konstantinos T Konstantinidis, Wen-Tso Liu, Brett J Baker, Thomas Rattei, Jonathan A Eisen, Brian Hedlund, Katherine D McMahon, Noah Fierer, Rob Knight, Rob Finn, Guy Cochrane, Ilene Karsch-Mizrachi, Gene W Tyson, Christian Rinke, , Alla Lapidus, Folker Meyer, Pelin Yilmaz, Donovan H Parks, A M Eren, Lynn Schriml, Jillian F Banfield, Philip Hugenholtz, Tanja WoykeNature Biotechnology2016-11-10
Targeting Inflammation in Cancer Prevention and Therapy.Jelena Todoric, Laura Antonucci, Michael KarinCancer Prevention Research (Philadelphia, Pa.)2016-11-10
A Precision Microbiome Approach Using Sucrose for Selective Augmentation of Staphylococcus epidermidis Fermentation against Propionibacterium acnes.Yanhan Wang, Ming-Shan Kao, Jinghua Yu, Stephen Huang, Shinta Marito, Richard L Gallo, Chun-Ming HuangInternational Journal Of Molecular Sciences2016-11-09
The aldehyde dehydrogenase, AldA, is essential for L-1,2-propanediol utilization in laboratory-evolved Escherichia coli.Ramy K Aziz, Jonathan M Monk, Kathleen A Andrews, Jenny Nhan, Valerie L Khaw, Hesper Wong, Bernhard O Palsson, Pep CharusantiMicrobiological Research2016-11-04
Blood-CSF barrier and compartmentalization of CNS cellular immune response in HIV infection.Sérgio M de Almeida, Indianara Rotta, Clea E Ribeiro, Davey Smith, Ruiyi Wang, Jennifer Judicello, Michael Potter, Florin Vaida, Scott Letendre, Ronald J Ellis, Journal Of Neuroimmunology2016-11-03
PD-1-PD-L1 immune-checkpoint blockade in B-cell lymphomas.Aaron Goodman, Sandip P Patel, Razelle KurzrockNature Reviews. Clinical Oncology2016-11-02
De Novo MS/MS Sequencing of Native Human Antibodies.Adrian Guthals, Yutian Gan, Laura Murray, Yongmei Chen, Jeremy Stinson, Gerald Nakamura, Jennie R Lill, Wendy Sandoval, Nuno BandeiraJournal Of Proteome Research2016-11-02
Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides.Don D Nguyen, Alexey V Melnik, Nobuhiro Koyama, Xiaowen Lu, Michelle Schorn, Jinshu Fang, Kristen Aguinaldo, Tommie L Lincecum, Maarten G K Ghequire, Victor J Carrion, Tina L Cheng, Brendan M Duggan, Jacob G Malone, Tim H Mauchline, Laura M Sanchez, A Marm Kilpatrick, Jos M Raaijmakers, René De Mot, Bradley S Moore, Marnix H Medema, Pieter C DorresteinNature Microbiology2016-10-31
FRT - FONDATION RENE TOURAINE: An International Foundation For Dermatology.Thomas C G Bosch, Karsten Zengler, Shruti Naik, Tilo Biedermann, Heidi H Kong, Karin Loser, Holger Brüggeman, Chris Calleawert, Jo Lambert, Tom Van de WieleExperimental Dermatology2016-10-30
Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRP.Donghyuk Kim, Sang Woo Seo, Ye Gao, Hojung Nam, Gabriela I Guzman, Byung-Kwan Cho, Bernhard O PalssonNucleic Acids Research2016-10-28
Latent Toxoplasma Infection and Higher Toxoplasma gondii Immunoglobulin G Levels Are Associated With Worse Neurocognitive Functioning in HIV-Infected Adults.Ajay R Bharti, Allen McCutchan, Reena Deutsch, Davey M Smith, Ronald J Ellis, Mariana Cherner, Steven P Woods, Robert K Heaton, Igor Grant, Scott L LetendreClinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America2016-10-28
Sequencing rare marine actinomycete genomes reveals high density of unique natural product biosynthetic gene clusters.Michelle A Schorn, Mohammad M Alanjary, Kristen Aguinaldo, Anton Korobeynikov, Sheila Podell, Nastassia Patin, Tommie Lincecum, Paul R Jensen, Nadine Ziemert, Bradley S MooreMicrobiology (Reading, England)2016-10-27
HIV-associated neurocognitive disorder is associated with HIV-1 dual infection.Gabriel A Wagner, Antoine Chaillon, Siqi Liu, Donald R Franklin, Gemma Caballero, Sergei L Kosakovsky Pond, Florin Vaida, Robert K Heaton, Scott L Letendre, Igor Grant, Douglas D Richman, Davey M SmithAIDS (London, England)2016-10-27
Multi-omic data integration enables discovery of hidden biological regularities.Ali Ebrahim, Elizabeth Brunk, Justin Tan, Edward J O'Brien, Donghyuk Kim, Richard Szubin, Joshua A Lerman, Anna Lechner, Anand Sastry, Aarash Bordbar, Adam M Feist, Bernhard O PalssonNature Communications2016-10-26
Prevalence and Correlates of Persistent HIV-1 RNA in Cerebrospinal Fluid During Antiretroviral Therapy.Albert M Anderson, Jose A Muñoz-Moreno, Daniel R McClernon, Ronald J Ellis, Debra Cookson, David B Clifford, Ann C Collier, Benjamin B Gelman, Christina M Marra, Justin C McArthur, J Allen McCutchan, Susan Morgello, Ned Sacktor, David M Simpson, Donald R Franklin, Robert K Heaton, Igor Grant, Scott L Letendre, The Journal Of Infectious Diseases2016-10-26
Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats.Daniel Petras, Louis-Félix Nothias, Robert A Quinn, Theodore Alexandrov, Nuno Bandeira, Amina Bouslimani, Gabriel Castro-Falcón, Liangyu Chen, Tam Dang, Dimitrios J Floros, Vivian Hook, Neha Garg, Nicole Hoffner, Yike Jiang, Clifford A Kapono, Irina Koester, Rob Knight, Christopher A Leber, Tie-Jun Ling, Tal Luzzatto-Knaan, Laura-Isobel McCall, Aaron P McGrath, Michael J Meehan, Jonathan K Merritt, Robert H Mills, Jamie Morton, Sonia Podvin, Ivan Protsyuk, Trevor Purdy, Kendall Satterfield, Stephen Searles, Sahil Shah, Sarah Shires, Dana Steffen, Margot White, Jelena Todoric, Robert Tuttle, Aneta Wojnicz, Valerie Sapp, Fernando Vargas, Jin Yang, Chao Zhang, Pieter C DorresteinAnalytical Chemistry2016-10-24
Cefazolin and Ertapenem, a Synergistic Combination Used To Clear Persistent Staphylococcus aureus Bacteremia.George Sakoulas, Joshua Olson, Juwon Yim, Niedita B Singh, Monika Kumaraswamy, Diana T Quach, Michael J Rybak, Joseph Pogliano, Victor NizetAntimicrobial Agents And Chemotherapy2016-10-21
Host-Microsporidia Interactions in Caenorhabditis elegans, a Model Nematode Host.Emily R TroemelMicrobiology Spectrum2016-10-21
Can research at the end of life be a useful tool to advance HIV cure?Sara Gianella, Jeff Taylor, Timothy R Brown, Andy Kaytes, Cristian L Achim, David J M