| Article | Authors | Journal | Date |
|---|---|---|---|
| Observed Mask Wearing and Presence of SARS-CoV-2 in School Wastewater, San Diego County, CA, 2022. | Rebecca Fielding-Miller, Tommi Gaines, Ashkan Hassani, Tina Le, Vinton Omaleki, Marlene Flores, Araz Majnoonian, F Carrissa Wijaya, Rob Knight, Smruthi Karthikeyan, Richard S Garfein | American Journal Of Public Health | 2025-03-12 |
| Machine learning uncovers the transcriptional regulatory network for the production host Streptomyces albidoflavus. | Mathias Jönsson, Renata Sigrist, Tetiana Gren, Mykhaylo Semenov Petrov, Nils Emil Junge Marcussen, Anna Svetlova, Pep Charusanti, Peter Gockel, Bernhard O Palsson, Lei Yang, Emre Özdemir | Cell Reports | 2025-03-07 |
| Gram-positive probiotics improves acetaminophen-induced hepatotoxicity by inhibiting leucine and Hippo-YAP pathway. | Wenkang Gao, Gang Wang, Hang Yuan, Yue Chen, Jiake Che, Zilu Cheng, Liuying Chen, Li Zhang, Yuanqing Zhu, Xin Liu, Ao Liu, Quancheng Yang, Peng Cao, Wei Qian, Weiyan Huang, Bernd Schnabl, Ling Yang, Huikuan Chu | Cell & Bioscience | 2025-03-07 |
| Absolute quantification of the living skin microbiome overcomes relic-DNA bias and reveals specific patterns across volunteers. | Deepan Thiruppathy, Oriane Moyne, Clarisse Marotz, Michael Williams, Perris Navarro, Livia Zaramela, Karsten Zengler | Microbiome | 2025-03-04 |
| Gut microbiota and derived metabolites mediate obstructive sleep apnea induced atherosclerosis. | Jin Xue, Celeste Allaband, Simone Zuffa, Orit Poulsen, Jason Meadows, Dan Zhou, Pieter C Dorrestein, Rob Knight, Gabriel G Haddad | Gut Microbes | 2025-03-02 |
| Discovery of metabolites prevails amid in-source fragmentation. | Yasin El Abiead, Adriano Rutz, Simone Zuffa, Bashar Amer, Shipei Xing, Corinna Brungs, Robin Schmid, Mario S P Correia, Andres Mauricio Caraballo-Rodriguez, Amir Zarrinpar, Helena Mannochio-Russo, Michael Witting, Ipsita Mohanty, Tomáš Pluskal, Wout Bittremieux, Rob Knight, Andrew D Patterson, Justin J J van der Hooft, Sebastian Böcker, Warwick B Dunn, Roger G Linington, David S Wishart, Jean-Luc Wolfender, Oliver Fiehn, Nicola Zamboni, Pieter C Dorrestein | Nature Metabolism | 2025-02-28 |
| Author Correction: Spatial chemistry of citrus reveals molecules bactericidal to Candidatus Liberibacter asiaticus. | Alexander A Aksenov, Alex Blacutt, Nichole Ginnan, Philippe E Rolshausen, Alexey V Melnik, Lotfi Ali, Emily C Gentry, Manikandan Ramasamy, Cristal Zuniga, Karsten Zengler, Kranthi K Mandadi, Pieter C Dorrestein, M Caroline Roper, Greg McCollum | Scientific Reports | 2025-02-28 |
| Human Untargeted Metabolomics in High-Throughput Gut Microbiome Research: Ethanol vs Methanol. | Simone Zuffa, Vincent Charron-Lamoureux, Caitriona Brennan, Madison Ambre, Rob Knight, Pieter C Dorrestein | Analytical Chemistry | 2025-02-27 |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Applied And Environmental Microbiology | 2025-02-27 |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Microbiology Spectrum | 2025-02-27 |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Journal Of Virology | 2025-02-27 |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Antimicrobial Agents And Chemotherapy | 2025-02-27 |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Journal Of Microbiology & Biology Education | 2025-02-27 |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Microbiology Resource Announcements | 2025-02-27 |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Microbiology And Molecular Biology Reviews : MMBR | 2025-02-27 |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Infection And Immunity | 2025-02-27 |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Clinical Microbiology Reviews | 2025-02-27 |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | MSystems | 2025-02-27 |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Journal Of Clinical Microbiology | 2025-02-27 |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | MSphere | 2025-02-27 |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | MBio | 2025-02-27 |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Journal Of Bacteriology | 2025-02-27 |
| Dietary intake of the red meat-derived glycan Neu5Gc fuels colorectal cancer through up-regulation of Wnt signaling pathway. | Ana Luiza Lopes, Amanda Carlos Paulino, Mariana A S Thaumaturgo, Wallace Martins Araújo, Philippe Caloba, Kunio Kawanishi, Karl Willert, Rodrigo P De Oliveira, João C Machado, Felipe Lemos, Nissi Varki, Jose Andres Morgado-Diaz, Heinz Läubli, Adriane Regina Todeschini, Ajit Varki, Frederico Alisson-Silva | Cancer Letters | 2025-02-27 |
| SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx. | Cameron Martino, Benjamin P Kellman, Daniel R Sandoval, Thomas Mandel Clausen, Robert Cooper, Alhosna Benjdia, Feryel Soualmia, Alex E Clark, Aaron F Garretson, Clarisse A Marotz, Se Jin Song, Stephen Wandro, Livia S Zaramela, Rodolfo A Salido, Qiyun Zhu, Erick Armingol, Yoshiki Vázquez-Baeza, Daniel McDonald, James T Sorrentino, Bryn Taylor, Pedro Belda-Ferre, Promi Das, Farhana Ali, Chenguang Liang, Yujie Zhang, Luca Schifanella, Alice Covizzi, Alessia Lai, Agostino Riva, Christopher Basting, Courtney Ann Broedlow, Aki S Havulinna, Pekka Jousilahti, Mehrbod Estaki, Tomasz Kosciolek, Rayus Kuplicki, Teresa A Victor, Martin P Paulus, Kristen E Savage, Jennifer L Benbow, Emma S Spielfogel, Cheryl A M Anderson, Maria Elena Martinez, James V Lacey, Shi Huang, Niina Haiminen, Laxmi Parida, Ho-Cheol Kim, Jack A Gilbert, Daniel A Sweeney, Sarah M Allard, Austin D Swafford, Susan Cheng, Michael Inoyue, Teemu Niiranen, Mohit Jain, Veikko Salomaa, Karsten Zengler, Nichole R Klatt, Jeff Hasty, Olivier Berteau, Aaron F Carlin, Jeffrey D Esko, Nathan E Lewis, Rob Knight | MBio | 2025-02-25 |
| To Impute or Not To Impute in Untargeted Metabolomics─That is the Compositional Question. | Dennis D Krutkin, Sydney Thomas, Simone Zuffa, Prajit Rajkumar, Rob Knight, Pieter C Dorrestein, Scott T Kelley | Journal Of The American Society For Mass Spectrometry | 2025-02-25 |
| Objectively measured moderate-to-vigorous physical activity does not attenuate prospective weight gain among african-origin adults spanning the epidemiological transition. | Jessica C Davies, Candice Choo-Kang, Larske Soepnel, Hayli Geffen, Chad Africa, Asanda Mtintsilana, Pascal Bovet, Bharathi Viswanathan, Kweku Bedu-Addo, Jacob Plange-Rhule, Prince Oti Boateng, Kingsley Apusiga, Oscar Akunor Dei, Terrence E Forrester, Marie Williams, Estelle V Lambert, Dale E Rae, Nandipha Sinyanya, Brian T Layden, Jack A Gilbert, Gertrude Ecklu-Mensah, Cara Joyce, Amy Luke, Lara R Dugas | Scientific Reports | 2025-02-25 |
| Urinary Metabolomic Profile is Minimally Impacted by Common Storage Conditions and Additives. | Kelly C Weldon, Morgan Panitchpakdi, Andrés Mauricio Caraballo-Rodríguez, Alan J Wolfe, Pieter C Dorrestein, Linda Brubaker, Lindsey A Burnett | International Urogynecology Journal | 2025-02-24 |
| ChIP provides 10-fold microbial DNA enrichment from tissue while minimizing bias. | Shrikant Bhute, Jon G Sanders, Se Jin Song, Sydney Lavoie, Austin Swafford, Caitlin Guccione, Lucas Patel, Antonio Gonzalez, Michelle G Rooks, Rob Knight, Andrew Bartko | Molecular Biology Reports | 2025-02-21 |
| Pre-pandemic leukocyte count is associated with severity of post-acute sequelae of SARS-CoV-2 infection among older women in the Women's Health Initiative. | Ted K S Ng, Hind A Beydoun, Diane Von Ah, Aladdin H Shadyab, Shu Cheng Wong, Matthew Freiberg, Farha Ikramuddin, Patricia K Nguyen, Philippe Jean-Luc Gradidge, Lihong Qi, Zhao Chen, Keenan A Pituch, Suzi Hong, JoAnn E Manson | Menopause (New York, N.Y.) | 2025-02-21 |
| The International Space Station has a unique and extreme microbial and chemical environment driven by use patterns. | Rodolfo A Salido, Haoqi Nina Zhao, Daniel McDonald, Helena Mannochio-Russo, Simone Zuffa, Renee E Oles, Allegra T Aron, Yasin El Abiead, Sawyer Farmer, Antonio González, Cameron Martino, Ipsita Mohanty, Ceth W Parker, Lucas Patel, Paulo Wender Portal Gomes, Robin Schmid, Tara Schwartz, Jennifer Zhu, Michael R Barratt, Kathleen H Rubins, Hiutung Chu, Fathi Karouia, Kasthuri Venkateswaran, Pieter C Dorrestein, Rob Knight | Cell | 2025-02-21 |
| Embracing the systems complexity of microbial ecology and evolution: call for papers. | Leonora Bittleston, Jack Gilbert, Jonathan Klassen, Rachel Mackelprang, Mark J Mandel, Ryan J Newton, Atmika Paudel, Alejandra Rodriguez-Verdugo, Ashley Shade, Roland C Wilhelm, Ying Zhang | MSystems | 2025-02-20 |
| Traits determine dispersal and colonization abilities of microbes. | Isidora Echenique-Subiabre, Sara L Jackrel, Jay McCarren, Chase C James, Elisabet Perez-Coronel, Cindy Tran, Madeline Perreault, Ugbad Farah, P Signe White, Henry K Baker, Christopher B Wall, Lindsay Sager, Scott Becker, Andrew D Barton, Jonathan B Shurin | Applied And Environmental Microbiology | 2025-02-20 |
| Acute-on-chronic liver failure (ACLF): the 'Kyoto Consensus'-steps from Asia. | Ashok Choudhury, Anand V Kulkarni, Vinod Arora, A S Soin, Abdul Kadir Dokmeci, Abhijeet Chowdhury, Abraham Koshy, Ajay Duseja, Ajay Kumar, Ajay Kumar Mishra, Ajay Kumar Patwa, Ajit Sood, Akash Roy, Akash Shukla, Albert Chan, Aleksander Krag, Amar Mukund, Ameet Mandot, Amit Goel, Amna Subhan Butt, Amrish Sahney, Ananta Shrestha, Andrés Cárdenas, Angelo Di Giorgio, Anil Arora, Anil Chandra Anand, Anil Dhawan, Ankur Jindal, Anoop Saraya, Anshu Srivastava, Anupam Kumar, Apichat Kaewdech, Apurva Pande, Archana Rastogi, Arun Valsan, Ashish Goel, Ashish Kumar, Ashwani K Singal, Atsushi Tanaka, Audrey Coilly, Ayaskanta Singh, Babu Lal Meena, Barath Jagadisan, Barjesh Chander Sharma, Bikrant Bihari Lal, C E Eapen, Cesar Yaghi, Chandan Kumar Kedarisetty, Chang Wook Kim, Charles Panackel, Chen Yu, Chetan R Kalal, Chhagan Bihari, Chien Hao Huang, Chitranshu Vasishtha, Christian Jansen, Christian Strassburg, Chun Yen Lin, Constantine J Karvellas, Cosmas Rinaldi Adithya Lesmana, Cyriac Abby Philips, Debbie Shawcross, Dharmesh Kapoor, Dhiraj Agrawal, Diana Alcantara Payawal, Dibya Lochan Praharaj, Dinesh Jothimani, Do Seon Song, Dong Joon Kim, Dong-Sik Kim, Duan Zhongping, Fazal Karim, Francois Durand, Gamal E Shiha, Gennaro D'Amico, George K Lau, Girish Kumar Pati, Graciela Elia Castro Narro, Guan-Huei Lee, Gupse Adali, Guru Prasad Dhakal, Gyongyi Szabo, H C Lin, Hai Li, Hari Kumar Nair, Harshad Devarbhavi, Harshvardhan Tevethia, Hasmik Ghazinian, Hemamala Ilango, Hong Ling Yu, Irsan Hasan, J Fernandez, Jacob George, Jaideep Behari, James Fung, Jasmohan Bajaj, Jaya Benjamin, Jennifer C Lai, Jidong Jia, Jin Hua Hu, Jin Jun Chen, Jin Lin Hou, Jin Mo Yang, Johannes Chang, Jonel Trebicka, Jörg C Kalf, Jose D Sollano, Joy Varghese, Juan Pablo Arab, Jun Li, K Rajender Reddy, Kaiser Raja, Kalpana Panda, Kamal Kajal, Karan Kumar, Kaushal Madan, Kemal Fariz Kalista, Kessarin Thanapirom, Khin Maung Win, Ki Tae Suk, Krishnadas Devadas, Laurentius A Lesmana, Lubna Kamani, Madhumita Premkumar, Madunil A Niriella, Mamun Al Mahtab, Man Fung Yuen, Manal HEl Sayed, Manasa Alla, Manav Wadhawan, Manoj Kumar Sharma, Manoj Sahu, Manya Prasad, Mark Dhinesh Muthiah, Martin Schulz, Meenu Bajpai, Mettu Srinivas Reddy, Michael Praktiknjo, Ming Lung Yu, Mithra Prasad, Mithun Sharma, Mohamed Elbasiony, Mohammed Eslam, Mohd Golam Azam, Mohd Rela, Moreshwar S Desai, Mukul Vij, Nadim Mahmud, Narendra Singh Choudhary, Navin Kumar Marannan, Necati Ormeci, Neeraj Saraf, Nipun Verma, Nobuaki Nakayama, Norifumi Kawada, Oidov Baatarkhuu, Omesh Goyal, Osamu Yokosuka, P N Rao, Paolo Angeli, Pathik Parikh, Patrick S Kamath, Paul J Thuluvath, Philipp Lingohr, Piyush Ranjan, Prashant Bhangui, Pravin Rathi, Puja Sakhuja, Puneet Puri, Qin Ning, R K Dhiman, Rahul Kumar, Rajan Vijayaraghavan, Rajeev Khanna, Rakhi Maiwall, Ravi Mohanka, Richard Moreau, Rino Alvani Gani, Rohit Loomba, Rohit Mehtani, Ruveena Bhavani Rajaram, S S Hamid, Sachin Palnitkar, Sadhna Lal, Sagnik Biswas, Sakkarin Chirapongsathorn, Samagra Agarwal, Sanjeev Sachdeva, Sanjiv Saigal, Santhosh E Kumar, Sargsyan Violeta, Satender Pal Singh, Satoshi Mochida, Saurabh Mukewar, Seema Alam, Seng Gee Lim, Shahinul Alam, Shalimar, Shantan Venishetty, Shikha S Sundaram, Shiran Shetty, Shobna Bhatia, Shweta A Singh, Shyam Kottilil, Simone Strasser, S M Shasthry, Soe Thiha Maung, Soek Siam Tan, Sombat Treeprasertsuk, Sonal Asthana, Steffen Manekeller, Subhash Gupta, Subrat Kumar Acharya, Sudhamshu K C, Sudhir Maharshi, Sumeet Asrani, Sunil Dadhich, Sunil Taneja, Suprabhat Giri, Surender Singh, Tao Chen, Tarana Gupta, Tatsuo Kanda, Tawesak Tanwandee, Teerha Piratvishuth, Ulrich Spengler, V G Mohan Prasad, Vandana Midha, Venera Rakhmetova, Vicente Arroyo, Vikrant Sood, Vinay Kumar Br, Vincent Wai-Sun Wong, Viniyendra Pamecha, Virendra Singh, Vishwa Mohan Dayal, Vivek A Saraswat, WRay Kim, Wasim Jafri, Wenyi Gu, Wong Yu Jun, Xiaolong Qi, Yogesh K Chawla, Yoon Jun Kim, Yu Shi, Zaigham Abbas, Guresh Kumar, Shuichiro Shiina, Lai Wei, Masao Omata, Shiv Kumar Sarin, | Hepatology International | 2025-02-17 |
| Fluoxetine promotes IL-10-dependent metabolic defenses to protect from sepsis-induced lethality. | Robert M Gallant, Karina K Sanchez, Emeline Joulia, Jessica M Snyder, Christian M Metallo, Janelle S Ayres | Science Advances | 2025-02-14 |
| Comparison of Methods for Isolation and Characterization of Total and Astrocyte-Enriched Extracellular Vesicles From Human Serum and Plasma. | Leandra K Figueroa-Hall, Kaiping Burrows, Ahlam M Alarbi, Bethany N Hannafon, Cole Hladik, Chibing Tan, Rajagopal Ramesh, Jennifer L Stewart, Victoria B Risbrough, Martin P Paulus, T Kent Teague | Journal Of Extracellular Biology | 2025-02-14 |
| Identification of Substituted 4-Aminocinnolines as Broad-Spectrum Antiparasitic Agents. | Andrew Spaulding, Amrita Sharma, Miriam A Giardini, Benjamin Hoffman, Jean A Bernatchez, Laura-Isobel McCall, Claudia M Calvet, Jasmin Ackermann, Julia M Souza, Diane Thomas, Caroline C Millard, William G Devine, Baljinder Singh, Everton M Silva, Susan E Leed, Norma E Roncal, Erica C Penn, Jessey Erath, Gaurav Kumar, Yadira Sepulveda, Arnold Garcia, Ana Rodriguez, Nelly El-Sakkary, Richard J Sciotti, Robert F Campbell, Jeremiah D Momper, James H McKerrow, Conor R Caffrey, Jair L Siqueira-Neto, Michael P Pollastri, Kojo Mensa-Wilmot, Lori Ferrins | ACS Infectious Diseases | 2025-02-12 |
| Author Correction: Transcription Factor 4 loss-of-function is associated with deficits in progenitor proliferation and cortical neuron content. | Fabio Papes, Antonio P Camargo, Janaina S de Souza, Vinicius M A Carvalho, Ryan A Szeto, Erin LaMontagne, José R Teixeira, Simoni H Avansini, Sandra M Sánchez-Sánchez, Thiago S Nakahara, Carolina N Santo, Wei Wu, Hang Yao, Barbara M P Araújo, Paulo E N F Velho, Gabriel G Haddad, Alysson R Muotri | Nature Communications | 2025-02-12 |
| Single-Enzyme Conversion of Tryptophan to Skatole and Cyanide Expands the Mechanistic Competence of Diiron Oxidases. | Sanjoy Adak, Logan A Calderone, August Krueger, Maria-Eirini Pandelia, Bradley S Moore | Journal Of The American Chemical Society | 2025-02-12 |
| Clinical Application of Bacteriophage Therapy in Children. | Nanda Ramchandar, John S Bradley | Pediatrics | 2025-02-11 |
| Modulating the developing gut microbiota with 2'-fucosyllactose and pooled human milk oligosaccharides. | Simone Renwick, Annalee Furst, Mikael Knip, , Lars Bode, Jayne S Danska, Emma Allen-Vercoe | Microbiome | 2025-02-07 |
| Metabolic deficiencies underlie reduced plasmacytoid dendritic cell IFN-I production following viral infection. | Trever T Greene, Yeara Jo, Carolina Chiale, Monica Macal, Ziyan Fang, Fawziyah S Khatri, Alicia L Codrington, Katelynn R Kazane, Elizabeth Akbulut, Shobha Swaminathan, Yu Fujita, Patricia Fitzgerald-Bocarsly, Thekla Cordes, Christian Metallo, David A Scott, Elina I Zúñiga | Nature Communications | 2025-02-07 |
| Comprehensive proteolytic profiling of Aedes aegypti mosquito midgut extracts: Unraveling the blood meal protein digestion system. | Anthony J O'Donoghue, Chenxi Lui, Carter J Simington, Saira Montermoso, Elizabeth Moreno-Galvez, Mateus Sá M Serafim, Olive E Burata, Rachael M Lucero, James T Nguyen, Daniel Fong, Khanh Tran, Neomi Millan, Jamie M Gallimore, Kamille Parungao, Jonathan Fong, Brian M Suzuki, Zhenze Jiang, Jun Isoe, Alberto A Rascón | PLoS Neglected Tropical Diseases | 2025-02-06 |
| Chronic conditions, COVID-19 vaccination, and institutional trust among Hispanic/Latinx communities in San Diego, California. | Samantha Streuli, Argentina E Servin, Linda Salgin, Fatima A Muñoz, Davey M Smith, Jamila K Stockman, Sophie E O'Bryan, Daniel Ramirez, Cynthia James-Price, Britt Skaathun | Preventive Medicine | 2025-02-03 |
| Adenosine deaminase and deoxyadenosine regulate intracellular immune response in . | Nicole D Wernet, Eillen Tecle, Mario Bardan Sarmiento, Cheng-Ju Kuo, Crystal B Chhan, Ian Baick, Lakshmi E Batachari, Latisha Franklin, Alice Herneisen, Gira Bhabha, Damian C Ekiert, Wendy Hanna-Rose, Emily R Troemel | IScience | 2025-02-03 |
| Essential oils modulate virulence phenotypes in a multidrug-resistant pyomelanogenic Pseudomonas aeruginosa clinical isolate. | Jayalekshmi Haripriyan, Christy Rose Binu, Nitasha D Menon, Muralidharan Vanuopadath, Malavika B Hari, N Namitha, Kesiya Binoy, Anil Kumar, Bipin G Nair, Victor Nizet, Geetha B Kumar | Scientific Reports | 2025-01-30 |
| Fatuamide A, a Hybrid PKS/NRPS Metallophore from a sp. Marine Cyanobacterium Collected in American Samoa. | Kelsey L Alexander, C Benjamin Naman, Arihiro Iwasaki, Alfonso Mangoni, Tiago Leao, Raphael Reher, Daniel Petras, Hyunwoo Kim, Eva Ternon, Eduardo J E Caro-Diaz, Evgenia Glukhov, Jana A Mitrevska, Nicole E Avalon, Brendan M Duggan, Lena Gerwick, William H Gerwick | Journal Of Natural Products | 2025-01-29 |
| A human gut bacterium antagonizes neighboring bacteria by altering their protein-folding ability. | Bentley Lim, Jinghua Xu, Igor H Wierzbicki, Carlos G Gonzalez, Zhe Chen, David J Gonzalez, Xiang Gao, Andrew L Goodman | Cell Host & Microbe | 2025-01-29 |
| Approach to Therapy for Chronic Pouchitis. | Maia Kayal, Brigid Boland | Annual Review Of Medicine | 2025-01-27 |
| Vaccination with mRNA-encoded membrane-bound HIV Envelope trimer induces neutralizing antibodies in animal models. | Parham Ramezani-Rad, Christopher A Cottrell, Ester Marina-Zárate, Alessia Liguori, Elise Landais, Jonathan L Torres, Amber Myers, Jeong Hyun Lee, Sabyasachi Baboo, Claudia Flynn, Katherine McKenney, Eugenia Salcedo, Xiaoya Zhou, Oleksandr Kalyuzhniy, Erik Georgeson, Nicole Phelps, Danny Lu, Saman Eskandarzadeh, Sergey Menis, Michael Kubitz, Bettina Groschel, Nushin Alavi, Abigail M Jackson, Wen-Hsin Lee, Andy S Tran, Elana Ben-Akiva, Katarzyna Kaczmarek Michaels, Jolene K Diedrich, Chiamaka A Enemuo, Vanessa Lewis, Arpan Pradhan, Sudhir Pai Kasturi, Torben Schiffner, Jon M Steichen, Diane G Carnathan, Sunny Himansu, John R Yates, James C Paulson, Gabriel Ozorowski, Darrell J Irvine, Guido Silvestri, Devin Sok, Andrew B Ward, Shane Crotty, William R Schief | BioRxiv : The Preprint Server For Biology | 2025-01-25 |
| Unraveling Mechanisms of Genetic Risks in Metabolic Dysfunction-Associated Steatotic Liver Diseases: A Pathway to Precision Medicine. | Xiang Zhang, Kyong-Mi Chang, Jun Yu, Rohit Loomba | Annual Review Of Pathology | 2025-01-24 |
| Cyclosporine Treatment in Patients with Kawasaki Disease and Coronary Artery Aneurysms or Treatment Resistance. | Irene Bellicini, Emelia Bainto, Chisato Shimizu, Jane C Burns, Adriana H Tremoulet | The Journal Of Pediatrics | 2025-01-24 |
| Enhanced suppression of by a three-phage cocktail: genomic insights and kinetic profiling. | Alisha N Monsibais, Olivia Tea, Pooja Ghatbale, Sage J B Dunham, Mirjam Zünd, Jennifer Phan, Karen Lam, McKenna Paulson, Natalie Tran, Diana S Suder, Alisha N Blanc, Cyril Samillano, Joy Suh, Hanna Atif, Ethan Vien, Ryan Nguyen, Allene Vo, Shane Gonen, David Pride, Katrine Whiteson | Antimicrobial Agents And Chemotherapy | 2025-01-22 |
| Multi-omic signatures of host response associated with presence, type, and outcome of enterococcal bacteremia. | Charlie Bayne, Dominic McGrosso, Concepcion Sanchez, Leigh-Ana Rossitto, Maxwell Patterson, Carlos Gonzalez, Courtney Baus, Cecilia Volk, Haoqi Nina Zhao, Pieter Dorrestein, Victor Nizet, George Sakoulas, David J Gonzalez, Warren Rose | MSystems | 2025-01-21 |
| Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data. | Caitlin Guccione, Lucas Patel, Yoshihiko Tomofuji, Daniel McDonald, Antonio Gonzalez, Gregory D Sepich-Poore, Kyuto Sonehara, Mohsen Zakeri, Yang Chen, Amanda Hazel Dilmore, Neil Damle, Sergio E Baranzini, George Hightower, Teruaki Nakatsuji, Richard L Gallo, Ben Langmead, Yukinori Okada, Kit Curtius, Rob Knight | Nature Communications | 2025-01-18 |
| A Pilot Study Exploring the Relationship Between Milk Composition and Microbial Capacity in Breastfed Infants. | Ashwana D Fricker, Kristija Sejane, Mina Desai, Michael W Snyder, Luis Duran, Rachel Mackelprang, Lars Bode, Michael G Ross, Gilberto E Flores | Nutrients | 2025-01-18 |
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| 2'-Fucosyllactose inhibits human norovirus replication in human intestinal enteroids. | Ketki Patil, B Vijayalakshmi Ayyar, Nicole M Hayes, Frederick H Neill, Lars Bode, Mary K Estes, Robert L Atmar, Sasirekha Ramani | Journal Of Virology | 2025-01-10 |
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| Global Epidemiology of Alcohol-Related Liver Disease, Liver Cancer, and Alcohol Use Disorder, 2000-2021. | Pojsakorn Danpanichkul, Luis Antonio Díaz, Kanokphong Suparan, Primrose Tothanarungroj, Supapitch Sirimangklanurak, Thanida Auttapracha, Hanna L Blaney, Banthoon Sukphutanan, Yanfang Pang, Siwanart Kongarin, Francisco Idalsoaga, Eduardo Fuentes-López, Lorenzo Leggio, Mazen Noureddin, Trenton M White, Alexandre Louvet, Philippe Mathurin, Rohit Loomba, Patrick S Kamath, Jürgen Rehm, Jeffrey V Lazarus, Karn Wijarnpreecha, Juan Pablo Arab | Clinical And Molecular Hepatology | 2025-01-09 |
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| Enhanced Killing of Methicillin-Resistant Staphylococcus aureus with Ceftaroline or Vancomycin in Combination with Carbapenems. | Allen Jankeel, Gabriel Pérez-Parra, Anuj K Khetarpal, Ivan A Alvarado, Victor Nizet, George Sakoulas, Erlinda R Ulloa | The Journal Of Infectious Diseases | 2025-01-08 |
| A genome-scale metabolic model for the denitrifying bacterium Thauera sp. MZ1T accurately predicts degradation of pollutants and production of polymers. | Diego Tec-Campos, Juan D Tibocha-Bonilla, Celina Jiang, Anurag Passi, Deepan Thiruppathy, Cristal Zuñiga, Camila Posadas, Alejandro Zepeda, Karsten Zengler | PLoS Computational Biology | 2025-01-07 |
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| A multiplex method for rapidly identifying viral protease inhibitors. | Seo Jung Hong, Samuel J Resnick, Sho Iketani, Ji Won Cha, Benjamin Alexander Albert, Christopher T Fazekas, Ching-Wen Chang, Hengrui Liu, Shlomi Dagan, Michael R Abagyan, Pavla Fajtová, Bruce Culbertson, Brooklyn Brace, Eswar R Reddem, Farhad Forouhar, J Fraser Glickman, James M Balkovec, Brent R Stockwell, Lawrence Shapiro, Anthony J O'Donoghue, Yosef Sabo, Joel S Freundlich, David D Ho, Alejandro Chavez | Molecular Systems Biology | 2025-01-06 |
| A Similar Mutation in the AAUU-Rich Elements of the Mouse TNF Gene Results in a Distinct Ileocolitic Phenotype: A New Strain of TNF-Overexpressing Mice. | Amruth Chilukuri, Margaret Kim, Taniya Mitra, John M Gubatan, Josef Urrete, Leo D Saxon, Amber Ablack, Zbigniew Mikulski, Katarzyna Dobaczewska, Zining Shen, Mary Keir, Tangsheng Yi, Prabhdeep Kaur, Patricia Oliveira, Jessica Murillo-Saich, Eric Y Chang, Calen A Steiner, Paul Jedlicka, Mónica Guma, Jesús Rivera-Nieves | Inflammatory Bowel Diseases | 2025-01-04 |
| Tofacitinib Mitigates the Increased SARS-CoV-2 Infection Susceptibility Caused by an IBD Risk Variant in the PTPN2 Gene. | Marianne R Spalinger, Golshid Sanati, Pritha Chatterjee, Rong Hai, Jiang Li, Alina N Santos, Tara M Nordgren, Michel L Tremblay, Lars Eckmann, Elaine Hanson, Michael Scharl, Xiwei Wu, Brigid S Boland, Declan F McCole | Cellular And Molecular Gastroenterology And Hepatology | 2025-01-03 |
| Evidence for microbially-mediated tradeoffs between growth and defense throughout coral evolution. | Hannah E Epstein, Tanya Brown, Ayọmikun O Akinrinade, Ryan McMinds, F Joseph Pollock, Dylan Sonett, Styles Smith, David G Bourne, Carolina S Carpenter, Rob Knight, Bette L Willis, Mónica Medina, Joleah B Lamb, Rebecca Vega Thurber, Jesse R Zaneveld | Animal Microbiome | 2025-01-03 |
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| System vaccinology analysis of predictors and mechanisms of antibody response durability to multiple vaccines in humans. | Mario Cortese, Thomas Hagan, Nadine Rouphael, Sheng-Yang Wu, Xia Xie, Dmitri Kazmin, Florian Wimmers, Shakti Gupta, Robbert van der Most, Margherita Coccia, Prabhu S Aranuchalam, Helder I Nakaya, Yating Wang, Elizabeth Coyle, Shu Horiuchi, Hanchih Wu, Mary Bower, Aneesh Mehta, Clifford Gunthel, Steve E Bosinger, Yuri Kotliarov, Foo Cheung, Pamela L Schwartzberg, Ronald N Germain, John Tsang, Shuzhao Li, Randy Albrecht, Hideki Ueno, Shankar Subramaniam, Mark J Mulligan, Surender Khurana, Hana Golding, Bali Pulendran | Nature Immunology | 2025-01-02 |
| FBP1 controls liver cancer evolution from senescent MASH hepatocytes. | Li Gu, Yahui Zhu, Shuvro P Nandi, Maiya Lee, Kosuke Watari, Breanna Bareng, Masafumi Ohira, Yuxiao Liu, Sadatsugu Sakane, Rodrigo Carlessi, Consuelo Sauceda, Debanjan Dhar, Souradipta Ganguly, Mojgan Hosseini, Marcos G Teneche, Peter D Adams, David J Gonzalez, Tatiana Kisseleva, , Janina E E Tirnitz-Parker, M Celeste Simon, Ludmil B Alexandrov, Michael Karin | Nature | 2025-01-01 |
| Decomposition of the pangenome matrix reveals a structure in gene distribution in the species. | Siddharth M Chauhan, Omid Ardalani, Jason C Hyun, Jonathan M Monk, Patrick V Phaneuf, Bernhard O Palsson | MSphere | 2024-12-31 |
| Gut microbiota in treating inflammatory digestive diseases: Current challenges and therapeutic opportunities. | Yongpeng Shi, Zeran Chen, Tingyu Fang, Xingyao Chen, Youpeng Deng, Hao Qin, Min Lian, Juntao Shen, Yuru Zong, Huikuan Chu, Constanze Hoebinger, Hao Guo, Zhongshang Yuan, Jie Zheng, Yongjian Zhou, Yue Pan, Beatriz G Mendes, Sonja Lang, Tim Hendrikx, Suling Zeng, Hailong Cao, Ling Yang, Lianmin Chen, Peng Chen, Lei Dai, Hua Wang, Shi Yin, Shu Zhu, Xiong Ma, Bernd Schnabl, Hanqing Chen, Yi Duan | IMeta | 2024-12-31 |
| Modulating the human gut microbiome and health markers through kombucha consumption: a controlled clinical study. | Gertrude Ecklu-Mensah, Rachel Miller, Maria Gjerstad Maseng, Vienna Hawes, Denise Hinz, Cheryl Kim, Jack A Gilbert | Scientific Reports | 2024-12-30 |
| Revealing systematic changes in the transcriptome during the transition from exponential growth to stationary phase. | Hyun Gyu Lim, Ye Gao, Kevin Rychel, Cameron Lamoureux, Xuwen A Lou, Bernhard O Palsson | MSystems | 2024-12-26 |
| TEMPTED: time-informed dimensionality reduction for longitudinal microbiome studies. | Pixu Shi, Cameron Martino, Rungang Han, Stefan Janssen, Gregory Buck, Myrna Serrano, Kouros Owzar, Rob Knight, Liat Shenhav, Anru R Zhang | Genome Biology | 2024-12-19 |
| resensitization of multidrug-resistant clinical isolates of and through phage-antibiotic synergy. | Pooja Ghatbale, Govind Prasad Sah, Sage Dunham, Ethan Khong, Alisha Blanc, Alisha Monsibais, Andrew Garcia, Robert T Schooley, Ana G Cobián Güemes, Katrine Whiteson, David T Pride | Antimicrobial Agents And Chemotherapy | 2024-12-19 |
| Soil microbiome interventions for carbon sequestration and climate mitigation. | Gwyn A Beattie, Anna Edlund, Nwadiuto Esiobu, Jack Gilbert, Mette Haubjerg Nicolaisen, Janet K Jansson, Paul Jensen, Marco Keiluweit, Jay T Lennon, Jennifer Martiny, Vanessa R Minnis, Dianne Newman, Raquel Peixoto, Christopher Schadt, Jan Roelof van der Meer | MSystems | 2024-12-18 |
| Pathobiont-driven antibody sialylation through IL-10 undermines vaccination. | Chih-Ming Tsai, Irshad A Hajam, J R Caldera, Austin Wt Chiang, Cesia Gonzalez, Xin Du, Biswa Choudhruy, Haining Li, Emi Suzuki, Fatemeh Askarian, Ty'Tianna Clark, Brian Lin, Igor H Wierzbicki, Angelica M Riestra, Douglas J Conrad, David J Gonzalez, Victor Nizet, Nathan E Lewis, George Y Liu | The Journal Of Clinical Investigation | 2024-12-16 |
| Immunization but not natural infection of horses results in antibody activity against the S protein of Streptococcus equi subsp equi. | Noah D Cohen, Emma V Hughes, Charlie Bayne, Ellen Ruth A Morris, Jocelyne M Bray, Kerstin K Landrock, Danielle M Gonzales, Reagan M Baker, Rafaela L Klein, Wen Liu, Rebecca M Legere, S Garrett Wehmeyer, Angela I Bordin, Igor H Wierzbicki, David J Gonzalez | American Journal Of Veterinary Research | 2024-12-16 |
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| Bactericidal efficacy of low dose gaseous ozone against clinically relevant multidrug-resistant bacteria. | Bob Banerjee, Christine Thompson, Victor Nizet, Elisabet Bjånes | Frontiers In Microbiology | 2024-12-11 |
| Pyrazinyl-Substituted Aminoazoles as Covalent Inhibitors of Thrombin: Synthesis, Structure, and Anticoagulant Properties. | Lukas Imberg, Alena I Siutkina, Catharina Erbacher, Judith Schmidt, Darius F Broekmans, Ruzanna A Ovsepyan, Constantin G Daniliuc, Ellen Gonçalves de Oliveira, Mateus Sá Magalhães Serafim, Anthony J O'Donoghue, Thanigaimalai Pillaiyar, Mikhail A Panteleev, Antti Poso, Svetlana A Kalinina, Marcel Bermúdez, Katrin Nekipelov, Gerd Bendas, Uwe Karst, Dmitrii V Kalinin | ACS Pharmacology & Translational Science | 2024-12-11 |
| Correction to: Genetic Risk, Dysbiosis, and Treatment Stratification Using Host Genome and Gut Microbiome in Inflammatory Bowel Disease. | Ahmed Moustafa, Weizhong Li, Ericka L Anderson, Emily H MWong, Parambir S Dulai, William J Sandborn, William Biggs, Shibu Yooseph, Marcus B Jones, Craig J Venter, Karen E Nelson, John T Chang, Amalio Telenti, Brigid S Boland | Clinical And Translational Gastroenterology | 2024-12-10 |
| HBV Remodels PP2A Complexes to Rewire Kinase Signaling in Hepatocellular Carcinoma. | Rigney E Turnham, Adriana Pitea, Gwendolyn M Jang, Zhong Xu, Huat Chye Lim, Alex L Choi, John Von Dollen, Rebecca S Levin, James T Webber, Elizabeth McCarthy, Junjie Hu, Xiaolei Li, Li Che, Ananya Singh, Alex Yoon, Gary Chan, Robin K Kelley, Danielle L Swaney, Wei Zhang, Sourav Bandyopadhyay, Fabian J Theis, Manon Eckhardt, Xin Chen, Kevan M Shokat, Trey Ideker, Nevan J Krogan, John D Gordan | Cancer Research | 2024-12-09 |
| Rapid and accurate testing for urinary tract infection: new clothes for the emperor. | Robert B Moreland, Linda Brubaker, Lana Tinawi, Alan J Wolfe | Clinical Microbiology Reviews | 2024-12-06 |
| Anthelmintic Treatment Reveals Sex-Dependent Worm-Gut Microbiota Interactions. | Kate A Sabey, Avina Castro, Se Jin Song, Rob Knight, Vanessa O Ezenwa | Parasite Immunology | 2024-12-05 |
| Clinical perspectives on the value of testing for and mutations in advanced NSCLC. | Michelle Shiller, Melissa Johnson, Robert Auber, Sandip Pravin Patel | Frontiers In Oncology | 2024-12-05 |
| Antiretroviral Drugs for Treatment and Prevention of HIV in Adults: 2024 Recommendations of the International Antiviral Society-USA Panel. | Rajesh T Gandhi, Raphael J Landovitz, Paul E Sax, Davey M Smith, Sandra A Springer, Huldrych F Günthard, Melanie A Thompson, Roger J Bedimo, Constance A Benson, Susan P Buchbinder, Brenda E Crabtree-Ramirez, Carlos Del Rio, Ellen F Eaton, Joseph J Eron, Jennifer F Hoy, Clara Lehmann, Jean-Michel Molina, Donna M Jacobsen, Michael S Saag | JAMA | 2024-12-01 |
| Inferring strain-level mutational drivers of phage-bacteria interaction phenotypes arising during coevolutionary dynamics. | Adriana Lucia-Sanz, Shengyun Peng, Chung Yin Joey Leung, Animesh Gupta, Justin R Meyer, Joshua S Weitz | Virus Evolution | 2024-11-29 |
| Perspective: Current Scientific Evidence and Research Strategies in the Role of Almonds in Cardiometabolic Health. | Paula R Trumbo, Jamy Ard, France Bellisle, Adam Drewnowski, Jack A Gilbert, Ronald Kleinman, Anoop Misra, John Sievenpiper, Maha Tahiri, Karol E Watson, James Hill | Current Developments In Nutrition | 2024-11-28 |
| Fostering healthy cognitive ageing in people living with HIV. | Lucette A Cysique, Jules Levin, Chris Howard, Jeff Taylor, John Rule, Jane Costello, Jane Bruning, Priscilla Njeri, Amy B Mullens, Edwina Wright, Hetta Gouse, Kirstie Daken, Mattia Trunfio, Htein Linn Aung, Reuben N Robbins, Christopher M Ferraris, Jose A Muñoz-Moreno, Steven P Woods, David J Moore, Christopher Power, Pui Li Wong, Kejal Hasmukharay, Primrose Nyamayaro, Jaime Vera, Reena Rajasuriar, Robert K Heaton, Karl Goodkin, Scott Letendre, Ronald J Ellis, Bruce J Brew, Sean B Rourke, | The Lancet. HIV | 2024-11-27 |
| Interleukin-2-secreting T helper cells promote extra-follicular B cell maturation via intrinsic regulation of a B cell mTOR-AKT-Blimp-1 axis. | Caterina E Faliti, Maria Mesina, Jinyong Choi, Simon Bélanger, Monique A Marshall, Christopher M Tipton, Sakeenah Hicks, Prashanti Chappa, Maria A Cardenas, Mohamed Abdel-Hakeem, Theresa C Thinnes, Christopher Cottrell, Christopher D Scharer, William R Schief, David Nemazee, Matthew C Woodruff, John M Lindner, Ignacio Sanz, Shane Crotty | Immunity | 2024-11-26 |
| Tamm-Horsfall protein augments neutrophil NETosis during urinary tract infection. | Vicki Mercado-Evans, Holly Branthoover, Claude Chew, Camille Serchejian, Alexander B Saltzman, Marlyd E Mejia, Jacob J Zulk, Ingrid Cornax, Victor Nizet, Kathryn A Patras | JCI Insight | 2024-11-26 |
| Carmaphycin B-Based Proteasome Inhibitors to Treat Human African Trypanosomiasis: Structure-Activity Relationship and Efficacy. | Lawrence J Liu, Karol R Francisco, Yujie Uli Sun, Mateus Sá Magalhães Serafim, Dilini K Amarasinghe, Thaiz R Teixeira, Bobby Lucero, Thales Kronenberger, Waad Elsayed, Hala Elwakeel, Momen Al-Hindy, Jehad Almaliti, William H Gerwick, Anthony J O'Donoghue, Conor R Caffrey | ACS Infectious Diseases | 2024-11-26 |
| Heterozygous BTNL8 variants in individuals with multisystem inflammatory syndrome in children (MIS-C). | Evangelos Bellos, Dilys Santillo, Pierre Vantourout, Heather R Jackson, Amedine Duret, Henry Hearn, Yoann Seeleuthner, Estelle Talouarn, Stephanie Hodeib, Harsita Patel, Oliver Powell, Sophya Yeoh, Sobia Mustafa, Dominic Habgood-Coote, Samuel Nichols, Leire Estramiana Elorrieta, Giselle D'Souza, Victoria J Wright, Diego Estrada-Rivadeneyra, Adriana H Tremoulet, Kirsten B Dummer, Stejara A Netea, Antonio Condino-Neto, Yu Lung Lau, Esmeralda Núñez Cuadros, Julie Toubiana, Marisol Holanda Pena, Frédéric Rieux-Laucat, Charles-Edouard Luyt, Filomeen Haerynck, Jean Louis Mège, Samya Chakravorty, Elie Haddad, Marie-Paule Morin, Özge Metin Akcan, Sevgi Keles, Melike Emiroglu, Gulsum Alkan, Sadiye Kübra Tüter Öz, Sefika Elmas Bozdemir, Guillaume Morelle, Alla Volokha, Yasemin Kendir-Demirkol, Betul Sözeri, Taner Coskuner, Aysun Yahsi, Belgin Gulhan, Saliha Kanik-Yuksek, Gulsum Iclal Bayhan, Aslinur Ozkaya-Parlakay, Osman Yesilbas, Nevin Hatipoglu, Tayfun Ozcelik, Alexandre Belot, Emilie Chopin, Vincent Barlogis, Esra Sevketoglu, Emin Menentoglu, Zeynep Gokce Gayretli Aydin, Marketa Bloomfield, Suzan A AlKhater, Cyril Cyrus, Yuriy Stepanovskiy, Anastasiia Bondarenko, Fatma Nur Öz, Meltem Polat, Jiří Fremuth, Jan Lebl, Amyrath Geraldo, Emmanuelle Jouanguy, , , , Michael J Carter, Paul Wellman, Mark Peters, Rebeca Pérez de Diego, Lindsey Ann Edwards, Christopher Chiu, Mahdad Noursadeghi, Alexandre Bolze, Chisato Shimizu, Myrsini Kaforou, Melissa Shea Hamilton, Jethro A Herberg, Erica G Schmitt, Agusti Rodriguez-Palmero, Aurora Pujol, Jihoon Kim, Aurélie Cobat, Laurent Abel, Shen-Ying Zhang, Jean-Laurent Casanova, Taco W Kuijpers, Jane C Burns, Michael Levin, Adrian C Hayday, Vanessa Sancho-Shimizu | The Journal Of Experimental Medicine | 2024-11-22 |
| Pattern-Based Genome Mining Guides Discovery of the Antibiotic Indanopyrrole A from a Marine Streptomycete. | Douglas Sweeney, Alexander Bogdanov, Alexander B Chase, Gabriel Castro-Falcón, Alma Trinidad-Javier, Samira Dahesh, Victor Nizet, Paul R Jensen | Journal Of Natural Products | 2024-11-22 |
| Community utilization of a co-created COVID-19 testing program in a US/Mexico border community. | Breanna J Reyes, Stephenie Tinoco Calvillo, Arleth A Escoto, Angel Lomeli, Maria Linda Burola, Luis Gay, Ariel Cohen, Isabel Villegas, Linda Salgin, Kelli L Cain, Dylan Pilz, Paul Watson, Bill Oswald, Cesar Arevalo, Jessica Sanchez, Marjorie Richardson, Jennifer Nelson, Pricilla Villanueva, Garrett McGaugh, Ilya Zaslavsky, Robert H Tukey, Nicole A Stadnick, Borsika A Rabin, Louise C Laurent, Marva Seifert | BMC Public Health | 2024-11-18 |
| Phase I study of a recombinant attenuated oncolytic virus, MEDI5395 (NDV-GM-CSF), administered systemically in combination with durvalumab in patients with advanced solid tumors. | Diwakar Davar, Benedito A Carneiro, Grace K Dy, Siddharth Sheth, Mitesh J Borad, Kevin J Harrington, Sandip P Patel, Evanthia Galanis, Adel Samson, Sonia Agrawal, Zhongying Chen, Chunling Fan, Maozhen Gong, Jenny Burton, Eric Tu, Nicholas Durham, Kevin Laubscher, Fernanda Arnaldez, Dmitriy Zamarin | Journal For Immunotherapy Of Cancer | 2024-11-17 |
| Possible Missing Sources of Atmospheric Glyoxal Part II: Oxidation of Toluene Derived from the Primary Production of Marine Microorganisms. | Renee T Williams, Annika Caspers-Brown, Jennifer Michaud, Natalie Stevens, Michael Meehan, Camille M Sultana, Christopher Lee, Francesca Malfatti, Yanyan Zhou, Farooq Azam, Kimberly A Prather, Pieter Dorrestein, Michael D Burkart, Robert S Pomeroy | Metabolites | 2024-11-16 |
| Distinct pathways for evolution of enhanced receptor binding and cell entry in SARS-like bat coronaviruses. | Alexandra L Tse, Cory M Acreman, Inna Ricardo-Lax, Jacob Berrigan, Gorka Lasso, Toheeb Balogun, Fiona L Kearns, Lorenzo Casalino, Georgia L McClain, Amartya Mudry Chandran, Charlotte Lemeunier, Rommie E Amaro, Charles M Rice, Rohit K Jangra, Jason S McLellan, Kartik Chandran, Emily Happy Miller | PLoS Pathogens | 2024-11-15 |
| Development of an Antiviral Medicinal Plant and Natural Product Database (avMpNp Database) from Biodiversity. | Daniela Quadros de Azevedo, João Vinícius Viera Nóia, Yasmim Carla M Ribeiro, Raphael Alves Dos Reis, Paulo Henrique Otoni Ribeiro, Gustavo Almeida Moura, Pamela Mendes, Ana Beatriz Barbosa de Souza, Sofia Carpini Mermejo, Mateus Sá Magalhães Serafim, Thaís Helena Maciel Fernandes, Anthony J O'Donoghue, Alessandra C Faria Aguiar Campos, Sérgio Vale Aguiar Campos, Vinícius Gonçalves Maltarollo, Rachel Oliveira Castilho | Chemistry & Biodiversity | 2024-11-15 |
| Physiological cost of antibiotic resistance: Insights from a ribosome variant in bacteria. | Eun Chae Moon, Tushar Modi, Dong-Yeon D Lee, Danis Yangaliev, Jordi Garcia-Ojalvo, S Banu Ozkan, Gürol M Süel | Science Advances | 2024-11-15 |
| Intrinsically robust and scalable biofilm segmentation under diverse physical growth conditions. | Jian-Geng Chiou, Todd Kwang-Tao Chou, Jordi Garcia-Ojalvo, Gürol M Süel | IScience | 2024-11-13 |
| Author Correction: Whole-body metabolic modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimer's disease. | Filippo Martinelli, Almut Heinken, Ann-Kristin Henning, Maria A Ulmer, Tim Hensen, Antonio González, Matthias Arnold, Sanjay Asthana, Kathrin Budde, Corinne D Engelman, Mehrbod Estaki, Hans-Jörgen Grabe, Margo B Heston, Sterling Johnson, Gabi Kastenmüller, Cameron Martino, Daniel McDonald, Federico E Rey, Ingo Kilimann, Olive Peters, Xiao Wang, Eike Jakob Spruth, Anja Schneider, Klaus Fliessbach, Jens Wiltfang, Niels Hansen, WenzelGlanz, Katharina Buerger, Daniel Janowitz, Christoph Laske, Matthias H Munk, Annika Spottke, Nina Roy, Matthias Nauck, Stefan Teipel, Rob Knight, Rima F Kaddurah-Daouk, Barbara B Bendlin, Johannes Hertel, Ines Thiele | Scientific Reports | 2024-11-12 |
| Comparative gut microbiome research through the lens of ecology: theoretical considerations and best practices. | Samuel Degregori, Xiaolin Wang, Akhil Kommala, Noah Schulhof, Sadaf Moradi, Allison MacDonald, Kaitlin Eblen, Sophia Jukovich, Emma Smith, Emily Kelleher, Kota Suzuki, Zoey Hall, Rob Knight, Katherine Ryan Amato | Biological Reviews Of The Cambridge Philosophical Society | 2024-11-12 |
| Diversity of transcriptional regulatory adaptation in E. coli. | Christopher Dalldorf, Ying Hefner, Richard Szubin, Josefin Johnsen, Elsayed Mohamed, Gaoyuan Li, Jayanth Krishnan, Adam M Feist, Bernhard O Palsson, Daniel C Zielinski | Molecular Biology And Evolution | 2024-11-12 |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | Nature Reviews. Microbiology | 2024-11-11 |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | Nature Microbiology | 2024-11-11 |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | Npj Biodiversity | 2024-11-11 |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | Communications Biology | 2024-11-11 |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | NPJ Biofilms And Microbiomes | 2024-11-11 |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | Nature Communications | 2024-11-11 |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | MSystems | 2024-11-11 |
| Multiplatform metabolomic interlaboratory study of a whole human stool candidate reference material from omnivore and vegan donors. | Abraham Kuri Cruz, Marina Amaral Alves, Thorkell Andresson, Amanda L Bayless, Kent J Bloodsworth, John A Bowden, Kevin Bullock, Meagan C Burnet, Fausto Carnevale Neto, Angelina Choy, Clary B Clish, Sneha P Couvillion, Raquel Cumeras, Lucas Dailey, Guido Dallmann, W Clay Davis, Amy A Deik, Alex M Dickens, Danijel Djukovic, Pieter C Dorrestein, Josie G Eder, Oliver Fiehn, Roberto Flores, Helen Gika, Kehau A Hagiwara, Tuan Hai Pham, James J Harynuk, Juan J Aristizabal-Henao, David W Hoyt, Focant Jean-François, Matilda Kråkström, Amit Kumar, Jennifer E Kyle, Santosh Lamichhane, Yuan Li, Seo Lin Nam, Rupasri Mandal, A Paulina de la Mata, Michael J Meehan, Thomas Meikopoulos, Thomas O Metz, Thomai Mouskeftara, Nathalie Munoz, G A Nagana Gowda, Matej Orešic, Morgan Panitchpakdi, Stefanuto Pierre-Hugues, Daniel Raftery, Blake Rushing, Tracey Schock, Harold Seifried, Stephanie Servetas, Tong Shen, Susan Sumner, Kieran S Tarazona Carrillo, Dejong Thibaut, Jesse B Trejo, Lieven Van Meulebroek, Lynn Vanhaecke, Christina Virgiliou, Kelly C Weldon, David S Wishart, Lu Zhang, Jiamin Zheng, Sandra Da Silva | Metabolomics : Official Journal Of The Metabolomic Society | 2024-11-04 |
| Digital PCR in Virology: Current Applications and Future Perspectives. | David Gleerup, Wim Trypsteen, Stephanie I Fraley, Ward De Spiegelaere | Molecular Diagnosis & Therapy | 2024-11-02 |
| Microbiome divergence of marine gastropod species separated by the Isthmus of Panama. | Alexander T Neu, Mark E Torchin, Eric E Allen, Kaustuv Roy | Applied And Environmental Microbiology | 2024-10-31 |
| Gut and oral microbial compositional differences in women with breast cancer, women with ductal carcinoma , and healthy women. | Emma McCune, Anukriti Sharma, Breanna Johnson, Tess O'Meara, Sarah Theiner, Maribel Campos, Diane Heditsian, Susie Brain, Jack A Gilbert, Laura Esserman, Michael J Campbell | MSystems | 2024-10-29 |
| Disparities in steatosis prevalence in the United States by Race or Ethnicity according to the 2023 criteria. | Luis Antonio Díaz, Jeffrey V Lazarus, Eduardo Fuentes-López, Francisco Idalsoaga, Gustavo Ayares, Hailemichael Desaleng, Pojsakorn Danpanichkul, Thomas G Cotter, Winston Dunn, Francisco Barrera, Karn Wijarnpreecha, Mazen Noureddin, Naim Alkhouri, Ashwani K Singal, Robert J Wong, Zobair M Younossi, Mary E Rinella, Patrick S Kamath, Ramon Bataller, Rohit Loomba, Marco Arrese, Juan Pablo Arab | Communications Medicine | 2024-10-29 |
| Topical ivermectin treatment of rosacea changes the bacterial microbiome of the skin. | Teruaki Nakatsuji, Joyce Y Cheng, Anna Butcher, Faiza Shafiq, Olive Osuoji, Richard L Gallo, Tissa R Hata | The Journal Of Investigative Dermatology | 2024-10-29 |
| Associations Between Gut Microbiota Diversity and a Host Fitness Proxy in a Naturalistic Experiment Using Threespine Stickleback Fish. | Andreas Härer, Ken A Thompson, Dolph Schluter, Diana J Rennison | Molecular Ecology | 2024-10-28 |
| An integrated view of the structure and function of the human 4D nucleome. | , Job Dekker, Betul Akgol Oksuz, Yang Zhang, Ye Wang, Miriam K Minsk, Shuzhen Kuang, Liyan Yang, Johan H Gibcus, Nils Krietenstein, Oliver J Rando, Jie Xu, Derek H Janssens, Steven Henikoff, Alexander Kukalev, Andréa Willemin, Warren Winick-Ng, Rieke Kempfer, Ana Pombo, Miao Yu, Pradeep Kumar, Liguo Zhang, Andrew S Belmont, Takayo Sasaki, Tom van Schaik, Laura Brueckner, Daan Peric-Hupkes, Bas van Steensel, Ping Wang, Haoxi Chai, Minji Kim, Yijun Ruan, Ran Zhang, Sofia A Quinodoz, Prashant Bhat, Mitchell Guttman, Wenxin Zhao, Shu Chien, Yuan Liu, Sergey V Venev, Dariusz Plewczynski, Ibai Irastorza Azcarate, Dominik Szabó, Christoph J Thieme, Teresa Szczepińska, Mateusz Chiliński, Kaustav Sengupta, Mattia Conte, Andrea Esposito, Alex Abraham, Ruochi Zhang, Yuchuan Wang, Xingzhao Wen, Qiuyang Wu, Yang Yang, Jie Liu, Lorenzo Boninsegna, Asli Yildirim, Yuxiang Zhan, Andrea Maria Chiariello, Simona Bianco, Lindsay Lee, Ming Hu, Yun Li, R Jordan Barnett, Ashley L Cook, Daniel J Emerson, Claire Marchal, Peiyao Zhao, Peter Park, Burak H Alver, Andrew Schroeder, Rahi Navelkar, Clara Bakker, William Ronchetti, Shannon Ehmsen, Alexander Veit, Nils Gehlenborg, Ting Wang, Daofeng Li, Xiaotao Wang, Mario Nicodemi, Bing Ren, Sheng Zhong, Jennifer E Phillips-Cremins, David M Gilbert, Katherine S Pollard, Frank Alber, Jian Ma, William S Noble, Feng Yue | BioRxiv : The Preprint Server For Biology | 2024-10-27 |
| Staphylococcus felis C4 exhibits in vitro antimicrobial activity against methicillin-resistant Staphylococcus pseudintermedius in a novel canine skin explant model. | Mayane Faccin, Alan M O'Neill, Sara D Lawhon, Kate A Worthing, Dominique J Wiener, Richard L Gallo, Aline Rodrigues Hoffmann | Veterinary Dermatology | 2024-10-25 |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | The ISME Journal | 2024-10-25 |
| iModulonMiner and PyModulon: Software for unsupervised mining of gene expression compendia. | Anand V Sastry, Yuan Yuan, Saugat Poudel, Kevin Rychel, Reo Yoo, Cameron R Lamoureux, Gaoyuan Li, Joshua T Burrows, Siddharth Chauhan, Zachary B Haiman, Tahani Al Bulushi, Yara Seif, Bernhard O Palsson, Daniel C Zielinski | PLoS Computational Biology | 2024-10-23 |
| Cardiorespiratory Fitness and Sleep, but not Physical Activity, are Associated with Functional Connectivity in Older Adults. | David Wing, Bart Roelands, Julie Loebach Wetherell, Jeanne F Nichols, Romain Meeusen, Job G Godino, Joshua S Shimony, Abraham Z Snyder, Tomoyuki Nishino, Ginger E Nicol, Guy Nagels, Lisa T Eyler, Eric J Lenze | Sports Medicine - Open | 2024-10-19 |
| Annotating full-scan MS data using tandem MS libraries. | Shipei Xing, Vincent Charron-Lamoureux, Yasin El Abiead, Pieter C Dorrestein | BioRxiv : The Preprint Server For Biology | 2024-10-17 |
| Two-Dimensional Liquid Chromatography Tandem Mass Spectrometry Untangles the Deep Metabolome of Marine Dissolved Organic Matter. | Stilianos Papadopoulos Lambidis, Tilman Schramm, Karoline Steuer-Lodd, Shane Farrell, Paolo Stincone, Robin Schmid, Irina Koester, Ralph Torres, Thorsten Dittmar, Lihini Aluwihare, Carsten Simon, Daniel Petras | Environmental Science & Technology | 2024-10-16 |
| Association Between Dietary Patterns and Subgingival Microbiota: Results From the Oral Infections, Glucose Intolerance, and Insulin Resistance Study (ORIGINS). | Rebecca L Molinsky, Abigail J Johnson, Lisa Marotz, Sumith Roy, Bruno Bohn, Charlene E Goh, Ching-Yuan Chen, Bruce Paster, Rob Knight, Jeanine Genkinger, Panos N Papapanou, David R Jacobs, Ryan T Demmer | Journal Of Clinical Periodontology | 2024-10-12 |
| Differential gut microbiota composition in β-Thalassemia patients and its correlation with iron overload. | Poochit Nonejuie, Alisa Wilantho, Daniel McDonald, Htut Htut Htoo, Jenjira Chalerm, Anupriya Tripathi, Chumpol Ngamphiw, Sissades Tongsima, Rob Knight, Kittiphong Paiboonsukwong, Suthat Fucharoen | Scientific Reports | 2024-10-11 |
| Bioelectronic tools for understanding the universal language of electrical signaling across species and kingdoms. | Shivani Shukla, Colin J Comerci, Gürol M Süel, Zeinab Jahed | Biosensors & Bioelectronics | 2024-10-11 |
| Advancing stem cell technologies for conservation of wildlife biodiversity. | Ashlee M Hutchinson, Ruth Appeltant, Tom Burdon, Qiuye Bao, Rhishikesh Bargaje, Andrea Bodnar, Stuart Chambers, Pierre Comizzoli, Laura Cook, Yoshinori Endo, Bob Harman, Katsuhiko Hayashi, Thomas Hildebrandt, Marisa L Korody, Uma Lakshmipathy, Jeanne F Loring, Clara Munger, Alex H M Ng, Ben Novak, Manabu Onuma, Sara Ord, Monique Paris, Andrew J Pask, Francisco Pelegri, Martin Pera, Ryan Phelan, Benyamin Rosental, Oliver A Ryder, Woranop Sukparangsi, Gareth Sullivan, Nicole Liling Tay, Nikki Traylor-Knowles, Shawn Walker, Antonia Weberling, Deanne J Whitworth, Suzannah A Williams, Jessye Wojtusik, Jun Wu, Qi-Long Ying, Thomas P Zwaka, Timo N Kohler | Development (Cambridge, England) | 2024-10-09 |
| The intricate pathogenicity of group a : A comprehensive update. | Helena Bergsten, Victor Nizet | Virulence | 2024-10-07 |
| A Three-year Longitudinal Assessment of Pseudomonas aeruginosa Antibiotic Susceptibility in Children With Cystic Fibrosis in the Era of Cystic Fibrosis Transmembrane Conductance Regulator Modulator Therapy. | Dayna Stout, John S Bradley, Yaron Fireizen, Kathryn Akong, Nanda Ramchandar | The Pediatric Infectious Disease Journal | 2024-10-04 |
| Pan-genome-scale metabolic modeling of reveals functionally distinct groups. | Maxwell Neal, William Brakewood, Michael Betenbaugh, Karsten Zengler | MSystems | 2024-10-04 |
| Diversity of human salivary heparan sulfate. | Charlotte B Spliid, Sanjay Mehta, Mark M Fuster, Cameron Martino, Claire L Morris, Nharae Lee, Ivan Florentino, Khang Tong, Lin Liu, Gail Ackermann, Rob Knight, Jeffrey D Esko, Tatiana Hurtado De Mendoza | Glycobiology | 2024-10-03 |
| Environment-independent distribution of mutational effects emerges from microscopic epistasis. | Sarah M Ardell, Alena Martsul, Milo S Johnson, Sergey Kryazhimskiy | Science (New York, N.Y.) | 2024-10-03 |
| Social behaviour mediates the microbiome response to antibiotic treatment in a wild mammal. | Bianca R P Brown, Allison E Williams, Kate A Sabey, Aaron Onserio, John Ewoi, Se Jin Song, Rob Knight, Vanessa O Ezenwa | Proceedings. Biological Sciences | 2024-10-02 |
| Study of impacts of two types of cellular aging on the yeast bud morphogenesis. | Kevin Tsai, Zhen Zhou, Jiadong Yang, Zhiliang Xu, Shixin Xu, Roya Zandi, Nan Hao, Weitao Chen, Mark Alber | PLoS Computational Biology | 2024-09-30 |
| Receptor and metabolic insights on the ability of caffeine to prevent alcohol-induced stimulation of mesolimbic dopamine transmission. | Valentina Bassareo, Riccardo Maccioni, Giuseppe Talani, Simone Zuffa, Yasin El Abiead, Irene Lorrai, Tomoya Kawamura, Sofia Pantis, Roberta Puliga, Romina Vargiu, Daniele Lecca, Paolo Enrico, Alessandra Peana, Laura Dazzi, Pieter C Dorrestein, Pietro Paolo Sanna, Enrico Sanna, Elio Acquas | Translational Psychiatry | 2024-09-28 |
| SpLitteR: diploid genome assembly using TELL-Seq linked-reads and assembly graphs. | Ivan Tolstoganov, Zhoutao Chen, Pavel Pevzner, Anton Korobeynikov | PeerJ | 2024-09-27 |
| Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data. | Abzer K Pakkir Shah, Axel Walter, Filip Ottosson, Francesco Russo, Marcelo Navarro-Diaz, Judith Boldt, Jarmo-Charles J Kalinski, Eftychia Eva Kontou, James Elofson, Alexandros Polyzois, Carolina González-Marín, Shane Farrell, Marie R Aggerbeck, Thapanee Pruksatrakul, Nathan Chan, Yunshu Wang, Magdalena Pöchhacker, Corinna Brungs, Beatriz Cámara, Andrés Mauricio Caraballo-Rodríguez, Andres Cumsille, Fernanda de Oliveira, Kai Dührkop, Yasin El Abiead, Christian Geibel, Lana G Graves, Martin Hansen, Steffen Heuckeroth, Simon Knoblauch, Anastasiia Kostenko, Mirte C M Kuijpers, Kevin Mildau, Stilianos Papadopoulos Lambidis, Paulo Wender Portal Gomes, Tilman Schramm, Karoline Steuer-Lodd, Paolo Stincone, Sibgha Tayyab, Giovanni Andrea Vitale, Berenike C Wagner, Shipei Xing, Marquis T Yazzie, Simone Zuffa, Martinus de Kruijff, Christine Beemelmanns, Hannes Link, Christoph Mayer, Justin J J van der Hooft, Tito Damiani, Tomáš Pluskal, Pieter Dorrestein, Jan Stanstrup, Robin Schmid, Mingxun Wang, Allegra Aron, Madeleine Ernst, Daniel Petras | Nature Protocols | 2024-09-20 |
| A living organoid biobank of patients with Crohn's disease reveals molecular subtypes for personalized therapeutics. | Courtney Tindle, Ayden G Fonseca, Sahar Taheri, Gajanan D Katkar, Jasper Lee, Priti Maity, Ibrahim M Sayed, Stella-Rita Ibeawuchi, Eleadah Vidales, Rama F Pranadinata, Mackenzie Fuller, Dominik L Stec, Mahitha Shree Anandachar, Kevin Perry, Helen N Le, Jason Ear, Brigid S Boland, William J Sandborn, Debashis Sahoo, Soumita Das, Pradipta Ghosh | Cell Reports. Medicine | 2024-09-20 |
| Genome-scale models in human metabologenomics. | Adil Mardinoglu, Bernhard Ø Palsson | Nature Reviews. Genetics | 2024-09-19 |
| CyuR is a dual regulator for L-cysteine dependent antimicrobial resistance in Escherichia coli. | Irina A Rodionova, Hyun Gyu Lim, Ye Gao, Dmitry A Rodionov, Ying Hutchison, Richard Szubin, Christopher Dalldorf, Jonathan Monk, Bernhard O Palsson | Communications Biology | 2024-09-17 |
| Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies. | Caitriona Brennan, Pedro Belda-Ferre, Simone Zuffa, Vincent Charron-Lamoureux, Ipsita Mohanty, Gail Ackermann, Celeste Allaband, Madison Ambre, Tara Boyer, MacKenzie Bryant, Kalen Cantrell, Antonio Gonzalez, Daniel McDonald, Rodolfo A Salido, Se Jin Song, Gillian Wright, Pieter C Dorrestein, Rob Knight | MSystems | 2024-09-16 |
| Novel weapon-aided plant protection in the underground battlefield. | Seonghan Jang, Jin-Soo Son, Eric A Schmelz, Choong-Min Ryu | Plant Signaling & Behavior | 2024-09-16 |
| A single diiron enzyme catalyses the oxidative rearrangement of tryptophan to indole nitrile. | Sanjoy Adak, Naike Ye, Logan A Calderone, Meng Duan, Wilson Lubeck, Rebecca J B Schäfer, April L Lukowski, K N Houk, Maria-Eirini Pandelia, Catherine L Drennan, Bradley S Moore | Nature Chemistry | 2024-09-16 |
| Organic anion transporters in remote sensing and organ crosstalk. | Jeffry C Granados, Sanjay K Nigam | Pharmacology & Therapeutics | 2024-09-14 |
| Machine learning reveals the transcriptional regulatory network and circadian dynamics of PCC 7942. | Yuan Yuan, Tahani Al Bulushi, Anand V Sastry, Cigdem Sancar, Richard Szubin, Susan S Golden, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2024-09-13 |
| Machine-Learning Analysis of Streptomyces coelicolor Transcriptomes Reveals a Transcription Regulatory Network Encompassing Biosynthetic Gene Clusters. | Yongjae Lee, Donghui Choe, Bernhard O Palsson, Byung-Kwan Cho | Advanced Science (Weinheim, Baden-Wurttemberg, Germany) | 2024-09-12 |
| Protocol to establish an accelerated murine model for Helicobacter-induced gastric cancer. | Prerna Bali, Ivonne Lozano-Pope, Jonathan Hernandez, Monica V Estrada, Christopher Benner, Marygorret Obonyo | STAR Protocols | 2024-09-11 |
| Y and Mitochondrial Chromosomes in the Heterogeneous Stock Rat Population. | Faith Okamoto, Apurva S Chitre, Thiago Missfeldt Sanches, Denghui Chen, Daniel Munro, Allegra T Aron, Angela Beeson, Hannah V Bimschleger, Maya Eid, Angel G Garcia Martinez, Wenyan Han, Katie Holl, Tyler Jackson, Benjamin B Johnson, Christopher P King, Brittany N Kuhn, Alexander C Lamparelli, Alesa H Netzley, Khai-Minh H Nguyen, Beverly F Peng, Jordan A Tripi, Tengfei Wang, Kendra S Ziegler, Douglas J Adams, Amelie Baud, Lieselot L G Carrette, Hao Chen, Giordano de Guglielmo, Pieter Dorrestein, Olivier George, Keita Ishiwari, Monica M Jablonski, Thomas C Jhou, Marsida Kallupi, Rob Knight, Paul J Meyer, Leah C Solberg Woods, Oksana Polesskaya, Abraham A Palmer | G3 (Bethesda, Md.) | 2024-09-09 |
| Distinct mucosal endotypes as initiators and drivers of rheumatoid arthritis. | V Michael Holers, Kristen M Demoruelle, Jane H Buckner, Eddie A James, Gary S Firestein, William H Robinson, Allen C Steere, Fan Zhang, Jill M Norris, Kristine A Kuhn, Kevin D Deane | Nature Reviews. Rheumatology | 2024-09-09 |
| Plasma cell-free RNA signatures of inflammatory syndromes in children. | Conor J Loy, Venice Servellita, Alicia Sotomayor-Gonzalez, Andrew Bliss, Joan S Lenz, Emma Belcher, Will Suslovic, Jenny Nguyen, Meagan E Williams, Miriam Oseguera, Michael A Gardiner, , , Jong-Ha Choi, Hui-Mien Hsiao, Hao Wang, Jihoon Kim, Chisato Shimizu, Adriana H Tremoulet, Meghan Delaney, Roberta L DeBiasi, Christina A Rostad, Jane C Burns, Charles Y Chiu, Iwijn De Vlaminck | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2024-09-06 |
| Human milk variation is shaped by maternal genetics and impacts the infant gut microbiome. | Kelsey E Johnson, Timothy Heisel, Mattea Allert, Annalee Fürst, Nikhila Yerabandi, Dan Knights, Katherine M Jacobs, Eric F Lock, Lars Bode, David A Fields, Michael C Rudolph, Cheryl A Gale, Frank W Albert, Ellen W Demerath, Ran Blekhman | Cell Genomics | 2024-09-06 |
| Hepatic immune regulation and sex disparities. | Patrizia Burra, Alberto Zanetto, Bernd Schnabl, Thomas Reiberger, Aldo J Montano-Loza, Rosanna Asselta, Tom Hemming Karlsen, Frank Tacke | Nature Reviews. Gastroenterology & Hepatology | 2024-09-05 |
| Gut Microbiome Compositional and Functional Features Associate with Alzheimer's Disease Pathology. | Jea Woo Kang, Lora A Khatib, Margo B Heston, Amanda H Dilmore, Jennifer S Labus, Yuetiva Deming, Leyla Schimmel, Colette Blach, Daniel McDonald, Antonio Gonzalez, MacKenzie Bryant, Karenina Sanders, Ara Schwartz, Tyler K Ulland, Sterling C Johnson, Sanjay Asthana, Cynthia M Carlsson, Nathaniel A Chin, Kaj Blennow, Henrik Zetterberg, Federico E Rey, , Rima Kaddurah-Daouk, Rob Knight, Barbara B Bendlin | MedRxiv : The Preprint Server For Health Sciences | 2024-09-05 |
| Pharmacokinetics, Safety and Tolerability of Single-dose or Multiple-dose Cefiderocol in Hospitalized Pediatric Patients Three Months to Less Than Eighteen Years Old With Infections Treated With Standard-of-care Antibiotics in the PEDI-CEFI Phase 2 Study. | John S Bradley, Elaine Orchiston, Simon Portsmouth, Mari Ariyasu, Takamichi Baba, Takayuki Katsube, Oluwaseun Makinde | The Pediatric Infectious Disease Journal | 2024-09-04 |
| Human milk oligosaccharides are associated with maternal genetics and respiratory health of human milk-fed children. | Amirthagowri Ambalavanan, Le Chang, Jihoon Choi, Yang Zhang, Sara A Stickley, Zhi Y Fang, Kozeta Miliku, Bianca Robertson, Chloe Yonemitsu, Stuart E Turvey, Piushkumar J Mandhane, Elinor Simons, Theo J Moraes, Sonia S Anand, Guillaume Paré, Janet E Williams, Brenda M Murdoch, Gloria E Otoo, Samwel Mbugua, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Debela K Gindola, Juan M Rodriguez, Rossina G Pareja, Daniel W Sellen, Sophie E Moore, Andrew M Prentice, James A Foster, Linda J Kvist, Holly L Neibergs, Mark A McGuire, Michelle K McGuire, Courtney L Meehan, Malcolm R Sears, Padmaja Subbarao, Meghan B Azad, Lars Bode, Qingling Duan | Nature Communications | 2024-09-04 |
| Spatial chemistry of citrus reveals molecules bactericidal to Candidatus Liberibacter asiaticus. | Alexander A Aksenov, Alex Blacutt, Nichole Ginnan, Philippe E Rolshausen, Alexey V Melnik, Ali Lotfi, Emily C Gentry, Manikandan Ramasamy, Cristal Zuniga, Karsten Zengler, Kranthi K Mandadi, Pieter C Dorrestein, M Caroline Roper | Scientific Reports | 2024-09-02 |
| A Population-Based Epidemiologic Study of Symptomatic SARS-CoV-2 Infections and Fatalities in Brazilian Children over 3 Years. | Eduardo A Oliveira, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Cristiane S Dias, Lilian M Diniz, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Clara C Pinhati, Stella C Galante, Isadora Y Veloso, Fernanda N Duelis, Hercílio Martelli-Júnior | The Journal Of Pediatrics | 2024-09-02 |
| Temporal and Spatial Dynamics of Synechococcus Clade II and Other Microbes in the Eutrophic Subtropical San Diego Bay. | Katie J Harding, Maitreyi Nagarkar, Maggie Wang, Kailey Ramsing, Niv Anidjar, Sarah Giddings, Bianca Brahamsha, Brian Palenik | Environmental Microbiology | 2024-09-02 |
| M proteins of group A Streptococcus bind hyaluronic acid via arginine-arginine/serine-arginine motifs. | Tahnee B-D McEwan, David M P De Oliveira, Emily K Stares, Lauren E Hartley-Tassell, Christopher J Day, Emma-Jayne Proctor, Victor Nizet, Mark J Walker, Michael P Jennings, Ronald Sluyter, Martina L Sanderson-Smith | FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology | 2024-08-31 |
| Statistical Challenges When Analyzing SARS-CoV-2 RNA Measurements Below the Assay Limit of Quantification in COVID-19 Clinical Trials. | Carlee B Moser, Kara W Chew, Mark J Giganti, Jonathan Z Li, Evgenia Aga, Justin Ritz, Alexander L Greninger, Arzhang Cyrus Javan, Rachel Bender Ignacio, Eric S Daar, David A Wohl, Judith S Currier, Joseph J Eron, Davey M Smith, Michael D Hughes, | The Journal Of Infectious Diseases | 2024-08-31 |
| Variant-Specific Viral Kinetics in Acute COVID-19. | Ruy M Ribeiro, Manish C Choudhary, Rinki Deo, Mark J Giganti, Carlee Moser, Justin Ritz, Alexander L Greninger, James Regan, James P Flynn, David A Wohl, Judith S Currier, Joseph J Eron, Michael D Hughes, Davey M Smith, Kara W Chew, Eric S Daar, Alan S Perelson, Jonathan Z Li, | The Journal Of Infectious Diseases | 2024-08-31 |
| Immune Status and SARS-CoV-2 Viral Dynamics. | Yijia Li, Carlee Moser, Evgenia Aga, Judith S Currier, David A Wohl, Eric S Daar, Justin Ritz, Alexander L Greninger, Scott Sieg, Urvi M Parikh, Robert W Coombs, Michael D Hughes, Joseph J Eron, Davey M Smith, Kara W Chew, Jonathan Z Li, | The Journal Of Infectious Diseases | 2024-08-31 |
| Association Between Anterior Nasal and Plasma SARS-CoV-2 RNA Levels and Hospitalization or Death in Nonhospitalized Adults With Mild-to-Moderate COVID-19. | Mark J Giganti, Kara W Chew, Joseph J Eron, Jonathan Z Li, Mauricio Pinilla, Carlee Moser, Arzhang Cyrus Javan, William A Fischer, Paul Klekotka, David Margolis, David Alain Wohl, Robert W Coombs, Eric S Daar, Davey M Smith, Judith S Currier, Michael D Hughes, | The Journal Of Infectious Diseases | 2024-08-31 |
| Diagnosis and mitigation of the systemic impact of genome reduction in DGF-298. | Antoine Champie, Jean-Christophe Lachance, Anand Sastry, Dominick Matteau, Colton J Lloyd, Frédéric Grenier, Cameron R Lamoureux, Simon Jeanneau, Adam M Feist, Pierre-Étienne Jacques, Bernhard O Palsson, Sébastien Rodrigue | MBio | 2024-08-29 |
| Host-associated microbes mitigate the negative impacts of aquatic pollution. | Rachel E Diner, Sarah M Allard, Jack A Gilbert | MSystems | 2024-08-29 |
| CCL28 modulates neutrophil responses during infection with mucosal pathogens. | Gregory T Walker, Araceli Perez-Lopez, Steven Silva, Michael H Lee, Elisabet Bjånes, Nicholas Dillon, Stephanie L Brandt, Romana R Gerner, Karine Melchior, Grant J Norton, Felix A Argueta, Frenchesca Dela Pena, Lauren Park, Victor A Sosa-Hernandez, Rodrigo Cervantes-Diaz, Sandra Romero-Ramirez, Monica Cartelle Gestal, Jose L Maravillas-Montero, Sean-Paul Nuccio, Victor Nizet, Manuela Raffatellu | ELife | 2024-08-28 |
| Simulation-driven design of stabilized SARS-CoV-2 spike S2 immunogens. | Xandra Nuqui, Lorenzo Casalino, Ling Zhou, Mohamed Shehata, Albert Wang, Alexandra L Tse, Anupam A Ojha, Fiona L Kearns, Mia A Rosenfeld, Emily Happy Miller, Cory M Acreman, Surl-Hee Ahn, Kartik Chandran, Jason S McLellan, Rommie E Amaro | Nature Communications | 2024-08-27 |
| Maternal immune cell gene expression associates with maternal gut microbiome, milk composition and infant gut microbiome. | Manoj Gurung, Bharath Kumar Mulakala, Brent Thomas Schlegel, Dhivyaa Rajasundaram, Kartik Shankar, Lars Bode, Meghan L Ruebel, Clark Sims, Audrey Martinez, Aline Andres, Laxmi Yeruva | Clinical Nutrition ESPEN | 2024-08-27 |
| Oral Supplementation with the Short-Chain Fatty Acid Acetate Ameliorates Age-Related Arterial Dysfunction in Mice. | Abigail G Longtine, Nathan T Greenberg, Antonio Gonzalez, Alexandra Lindquist, Nicholas S VanDongen, Sophia A Mahoney, Gibraan Rahman, Zachary S Clayton, Brian P Ziemba, Katelyn R Ludwig, Michael E Widlansky, Rob Knight, Douglas R Seals, Vienna E Brunt | Aging Biology | 2024-08-27 |
| Fecal gelatinase does not predict mortality in patients with alcohol-associated hepatitis. | Yongqiang Yang, Phillipp Hartmann, Bernd Schnabl | Microbial Cell (Graz, Austria) | 2024-08-26 |
| Towards Understanding Tumour Colonisation by Probiotic Bacterium Nissle 1917. | Georgette A Radford, Laura Vrbanac, Rebekah T de Nys, Daniel L Worthley, Josephine A Wright, Jeff Hasty, Susan L Woods | Cancers | 2024-08-26 |
| Human milk microbiota, oligosaccharide profiles, and infant gut microbiome in preterm infants diagnosed with necrotizing enterocolitis. | Andrea C Masi, Lauren C Beck, John D Perry, Claire L Granger, Alice Hiorns, Gregory R Young, Lars Bode, Nicholas D Embleton, Janet E Berrington, Christopher J Stewart | Cell Reports. Medicine | 2024-08-23 |
| Impact of SARS-CoV-2 Resistance to Antiviral Monoclonal Antibody Therapy on Neutralizing Antibody Response. | Marc-Kendy Paul, Manish C Choudhary, Amy L Heaps, Rinki Deo, Daniela Moisi, Kelley C Gordon, John W Mellors, Carlee Moser, Paul Klekotka, Alan Landay, Judith S Currier, Joseph J Eron, Kara W Chew, Davey M Smith, Scott F Sieg, Urvi M Parikh, Jonathan Z Li, | Pathogens & Immunity | 2024-08-21 |
| Modulating bacterial function utilizing A knowledge base of transcriptional regulatory modules. | Jongoh Shin, Daniel C Zielinski, Bernhard O Palsson | Nucleic Acids Research | 2024-08-19 |
| Biosignature Molecules Accumulate and Persist in Evaporitic Brines: Implications for Planetary Exploration. | Chad Pozarycki, Kenneth M Seaton, Emily C Vincent, Carlie Novak Sanders, Nickie Nuñez, Mariah Castillo, Ellery Ingall, Benjamin Klempay, Alexandra Pontefract, Luke A Fisher, Emily R Paris, Steffen Buessecker, Nikolas B Alansson, Christopher E Carr, Peter T Doran, Jeff S Bowman, Britney E Schmidt, Amanda M Stockton | Astrobiology | 2024-08-19 |
| A genome-scale metabolic model of a globally disseminated hyperinvasive M1 strain of . | Yujiro Hirose, Daniel C Zielinski, Saugat Poudel, Kevin Rychel, Jonathon L Baker, Yoshihiro Toya, Masaya Yamaguchi, Almut Heinken, Ines Thiele, Shigetada Kawabata, Bernhard O Palsson, Victor Nizet | MSystems | 2024-08-19 |
| Effect of Topical Microencapsulated Benzoyl Peroxide on the Skin Microbiome in Rosacea: A Randomized, Double-Blind, Crossover, Vehicle-Controlled Clinical Trial. | Yvonne Nong, Jeffrey Sugarman, Jean Philippe York, Ofra Levy-Hacham, Dawnica Nadora, Rinat Mizrahi, Aidan Galati, Richard L Gallo, Raja K Sivamani | The Journal Of Clinical And Aesthetic Dermatology | 2024-08-16 |
| Longitudinal assessment of the impact of COVID-19 infection on mask-wearing behaviors. | Danielle Pham, Angel Lomeli, Nicole H Goldhaber, Holly D Valentine, Rob Knight, Christopher A Longhurst, Louise C Laurent, Marni B Jacobs | BMC Public Health | 2024-08-16 |
| Autism-associated CHD8 controls reactive gliosis and neuroinflammation via remodeling chromatin in astrocytes. | Platon Megagiannis, Yuan Mei, Rachel E Yan, Lin Yuan, Jonathan J Wilde, Hailey Eckersberg, Rahul Suresh, Xinzhu Tan, Hong Chen, W Todd Farmer, Kuwook Cha, Phuong Uyen Le, Helene Catoire, Daniel Rochefort, Tony Kwan, Brian A Yee, Patrick Dion, Arjun Krishnaswamy, Jean-Francois Cloutier, Stefano Stifani, Kevin Petrecca, Gene W Yeo, Keith K Murai, Guoping Feng, Guy A Rouleau, Trey Ideker, Neville E Sanjana, Yang Zhou | Cell Reports | 2024-08-16 |
| Epidemiology of Pediatric Astrovirus Gastroenteritis in a Nicaraguan Birth Cohort. | Rebecca J Rubinstein, Lester Gutiérrez, Christian Toval-Ruíz, Kelli Hammond, Lars Bode, Jan Vinjé, Samuel Vilchez, Sylvia Becker-Dreps, Filemón Bucardo, Nadja A Vielot, Yaoska Reyes | Open Forum Infectious Diseases | 2024-08-16 |
| Associations between gut microbiota and incident fractures in the FINRISK cohort. | Louise Grahnemo, Oleg Kambur, Leo Lahti, Pekka Jousilahti, Teemu Niiranen, Rob Knight, Veikko Salomaa, Aki S Havulinna, Claes Ohlsson | NPJ Biofilms And Microbiomes | 2024-08-14 |
| The impact of breastfeeding on the preterm infant's microbiome and metabolome: a pilot study. | Keriann Schulkers Escalante, Shiyu S Bai-Tong, Sarah M Allard, Gertrude Ecklu-Mensah, Concepcion Sanchez, Se Jin Song, Jack Gilbert, Lars Bode, Pieter Dorrestein, Rob Knight, David J Gonzalez, Sydney A Leibel, Sandra L Leibel | Pediatric Research | 2024-08-13 |
| Gut mycobiome alterations and implications for liver diseases. | Suling Zeng, Bernd Schnabl | PLoS Pathogens | 2024-08-08 |
| Linoleoyl-lysophosphatidylcholine suppresses immune-related adverse events due to immune checkpoint blockade. | Ian T Mathews, Priyanka Saminathan, Mir Henglin, Mingyue Liu, Namratha Nadig, Camille Fang, Kysha Mercader, Serena J Chee, Allison M Campbell, Abhijit A Patel, Saumya Tiwari, Jeramie D Watrous, Karthik Ramesh, Martina Dicker, Khoi Dao, Melissa A Meyer, Pekka Jousilahti, Aki S Havulinna, Teemu Niiranen, Veikko Salomaa, Leo A B Joosten, Mihai G Netea, Pan Zheng, Mitchell Kronenberg, Sandip Pravin Patel, J Silvio Gutkind, Christian Ottensmeier, Tao Long, Susan M Kaech, Catherine C Hedrick, Susan Cheng, Mohit Jain, Sonia Sharma | MedRxiv : The Preprint Server For Health Sciences | 2024-08-08 |
| The Central Roles of Keratinocytes in Coordinating Skin Immunity. | Jared Simmons, Richard L Gallo | The Journal Of Investigative Dermatology | 2024-08-07 |
| Social and environmental predictors of gut microbiome age in wild baboons. | Mauna R Dasari, Kimberly E Roche, David Jansen, Jordan Anderson, Susan C Alberts, Jenny Tung, Jack A Gilbert, Ran Blekhman, Sayan Mukherjee, Elizabeth A Archie | BioRxiv : The Preprint Server For Biology | 2024-08-04 |
| Phage resistance mutations affecting the bacterial cell surface increase susceptibility to fungi in a model cheese community. | Tara C J Spencer-Drakes, Angel Sarabia, Gary Heussler, Emily C Pierce, Manon Morin, Steven Villareal, Rachel J Dutton | ISME Communications | 2024-08-02 |
| Immunological memory diversity in the human upper airway. | Sydney I Ramirez, Farhoud Faraji, L Benjamin Hills, Paul G Lopez, Benjamin Goodwin, Hannah D Stacey, Henry J Sutton, Kathryn M Hastie, Erica Ollmann Saphire, Hyun Jik Kim, Sara Mashoof, Carol H Yan, Adam S DeConde, Gina Levi, Shane Crotty | Nature | 2024-07-31 |
| Complete sequencing of ape genomes. | DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A Logsdon, Steven J Solar, Dmitry Antipov, Brandon D Pickett, Yana Safonova, Francesco Montinaro, Yanting Luo, Joanna Malukiewicz, Jessica M Storer, Jiadong Lin, Abigail N Sequeira, Riley J Mangan, Glenn Hickey, Graciela Monfort Anez, Parithi Balachandran, Anton Bankevich, Christine R Beck, Arjun Biddanda, Matthew Borchers, Gerard G Bouffard, Emry Brannan, Shelise Y Brooks, Lucia Carbone, Laura Carrel, Agnes P Chan, Juyun Crawford, Mark Diekhans, Eric Engelbrecht, Cedric Feschotte, Giulio Formenti, Gage H Garcia, Luciana de Gennaro, David Gilbert, Richard E Green, Andrea Guarracino, Ishaan Gupta, Diana Haddad, Junmin Han, Robert S Harris, Gabrielle A Hartley, William T Harvey, Michael Hiller, Kendra Hoekzema, Marlys L Houck, Hyeonsoo Jeong, Kaivan Kamali, Manolis Kellis, Bryce Kille, Chul Lee, Youngho Lee, William Lees, Alexandra P Lewis, Qiuhui Li, Mark Loftus, Yong Hwee Eddie Loh, Hailey Loucks, Jian Ma, Yafei Mao, Juan F I Martinez, Patrick Masterson, Rajiv C McCoy, Barbara McGrath, Sean McKinney, Britta S Meyer, Karen H Miga, Saswat K Mohanty, Katherine M Munson, Karol Pal, Matt Pennell, Pavel A Pevzner, David Porubsky, Tamara Potapova, Francisca R Ringeling, Joana L Rocha, Oliver A Ryder, Samuel Sacco, Swati Saha, Takayo Sasaki, Michael C Schatz, Nicholas J Schork, Cole Shanks, Linnéa Smeds, Dongmin R Son, Cynthia Steiner, Alexander P Sweeten, Michael G Tassia, Françoise Thibaud-Nissen, Edmundo Torres-González, Mihir Trivedi, Wenjie Wei, Julie Wertz, Muyu Yang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhang, Sarah A Zhao, Yixin Zhu, Erich D Jarvis, Jennifer L Gerton, Iker Rivas-González, Benedict Paten, Zachary A Szpiech, Christian D Huber, Tobias L Lenz, Miriam K Konkel, Soojin V Yi, Stefan Canzar, Corey T Watson, Peter H Sudmant, Erin Molloy, Erik Garrison, Craig B Lowe, Mario Ventura, Rachel J O'Neill, Sergey Koren, Kateryna D Makova, Adam M Phillippy, Evan E Eichler | BioRxiv : The Preprint Server For Biology | 2024-07-31 |
| SkinCom, a synthetic skin microbial community, enables reproducible investigations of the human skin microbiome. | Asama Lekbua, Deepan Thiruppathy, Joanna Coker, Yuhan Weng, Fatemeh Askarian, Armin Kousha, Clarisse Marotz, Amber Hauw, Victor Nizet, Karsten Zengler | Cell Reports Methods | 2024-07-30 |
| Gut-Microbiota-Related Metabolite Phenylacetylglutamine and Risk of Incident Coronary Heart Disease among Women. | Yoriko Heianza, Saumya Tiwari, Xuan Wang, Jeramie D Watrous, Kathryn M Rexrode, Frank B Hu, Mona Alotaibi, Mohit Jain, Qi Sun, JoAnn E Manson, Lu Qi | The Journal Of Clinical Endocrinology And Metabolism | 2024-07-30 |
| Infant microbiota communities and HMO supplementation independently and synergistically shape metabolite production and immune responses in healthy mice. | Patricia Tripp, Erin C Davis, Manoj Gurung, Fernanda Rosa, Lars Bode, Renee Fox, Tanya LeRoith, Christy Simecka, Antti E Seppo, Kirsi M Järvinen, Laxmi Yeruva | The Journal Of Nutrition | 2024-07-26 |
| Gene expression and chromatin conformation of microglia in virally suppressed people with HIV. | Johannes Cm Schlachetzki, Sara Gianella, Zhengyu Ouyang, Addison J Lana, Xiaoxu Yang, Sydney O'Brien, Jean F Challacombe, Peter J Gaskill, Kelly L Jordan-Sciutto, Antoine Chaillon, David Moore, Cristian L Achim, Ronald J Ellis, Davey M Smith, Christopher K Glass | Life Science Alliance | 2024-07-26 |
| Gut Bacteria in Alcohol-Associated Liver Disease. | Yongqiang Yang, Bernd Schnabl | Clinics In Liver Disease | 2024-07-24 |
| SARS-CoV-2 monoclonal antibody treatment followed by vaccination shifts human memory B cell epitope recognition suggesting antibody feedback. | Nathaniel Bloom, Sydney I Ramirez, Hallie Cohn, Urvi M Parikh, Amy Heaps, Scott F Sieg, Alex Greninger, Justin Ritz, Carlee Moser, Joseph J Eron, Goran Bajic, Judith S Currier, Paul Klekotka, David A Wohl, Eric S Daar, Jonathan Li, Michael D Hughes, Kara W Chew, Davey M Smith, Shane Crotty, Camila H Coelho, | The Journal Of Infectious Diseases | 2024-07-22 |
| The indoors microbiome and human health. | Jack A Gilbert, Erica M Hartmann | Nature Reviews. Microbiology | 2024-07-19 |
| Comparative efficacy of pharmacologic therapies for MASH in reducing liver fat content: Systematic review and network meta-analysis. | Benjamin Koh, Jieling Xiao, Cheng Han Ng, Michelle Law, Shyna Zhuoying Gunalan, Pojsakorn Danpanichkul, Vijay Ramadoss, Benedix Kuan Loon Sim, En Ying Tan, Chong Boon Teo, Benjamin Nah, Margaret Teng, Karn Wijarnpreecha, Yuya Seko, Mei Chin Lim, Hirokazu Takahashi, Atsushi Nakajima, Mazen Noureddin, Mark Muthiah, Daniel Q Huang, Rohit Loomba | Hepatology (Baltimore, Md.) | 2024-07-19 |
| A therapy for suppressing canonical and noncanonical SARS-CoV-2 viral entry and an intrinsic intrapulmonary inflammatory response. | Sandra L Leibel, Rachael N McVicar, Rabi Murad, Elizabeth M Kwong, Alex E Clark, Asuka Alvarado, Bethany A Grimmig, Ruslan Nuryyev, Randee E Young, Jamie C Lee, Weiqi Peng, Yanfang P Zhu, Eric Griffis, Cameron J Nowell, Brian James, Suzie Alarcon, Atul Malhotra, Linden J Gearing, Paul J Hertzog, Cheska M Galapate, Koen M O Galenkamp, Cosimo Commisso, Davey M Smith, Xin Sun, Aaron F Carlin, Richard L Sidman, Ben A Croker, Evan Y Snyder | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2024-07-19 |
| House dust metagenome and pulmonary function in a US farming population. | Mikyeong Lee, Abhishek Kaul, James M Ward, Qiyun Zhu, Marie Richards, Ziyue Wang, Antonio González, Christine G Parks, Laura E Beane Freeman, David M Umbach, Alison A Motsinger-Reif, Rob Knight, Stephanie J London | Microbiome | 2024-07-18 |
| Severe Acute Respiratory Syndrome Coronavirus 2 Plasma Antibody and Nucleocapsid Antigen Status Predict Outcomes in Outpatients With Coronavirus Disease 2019. | Nikolaus Jilg, Mark J Giganti, Kara W Chew, Katy Shaw-Saliba, Justin Ritz, Carlee Moser, Teresa H Evering, Eric S Daar, Joseph J Eron, Judith S Currier, Michael D Hughes, H Cliff Lane, Robin Dewar, Davey M Smith, Jonathan Z Li | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2024-07-17 |
| Mixotrophic growth of a ubiquitous marine diatom. | Manish Kumar, Juan D Tibocha-Bonilla, Zoltán Füssy, Chloe Lieng, Sarah M Schwenck, Alice V Levesque, Mahmoud M Al-Bassam, Anurag Passi, Maxwell Neal, Cristal Zuniga, Farrah Kaiyom, Josh L Espinoza, Hyungyu Lim, Shawn W Polson, Lisa Zeigler Allen, Karsten Zengler | Science Advances | 2024-07-17 |
| How bile acids and the microbiota interact to shape host immunity. | Michael H Lee, Sean-Paul Nuccio, Ipsita Mohanty, Lee R Hagey, Pieter C Dorrestein, Hiutung Chu, Manuela Raffatellu | Nature Reviews. Immunology | 2024-07-15 |
| Human microglial cells as a therapeutic target in a neurodevelopmental disease model. | Pinar Mesci, Christopher N LaRock, Jacob J Jeziorski, Hideyuki Nakashima, Natalia Chermont, Adriano Ferrasa, Roberto H Herai, Tomoka Ozaki, Aurian Saleh, Cedric E Snethlage, Sandra Sanchez, Gabriela Goldberg, Cleber A Trujillo, Kinichi Nakashima, Victor Nizet, Alysson R Muotri | Stem Cell Reports | 2024-07-13 |
| Priming antibody responses to the fusion peptide in rhesus macaques. | Christopher A Cottrell, Payal P Pratap, Kimberly M Cirelli, Diane G Carnathan, Chiamaka A Enemuo, Aleksandar Antanasijevic, Gabriel Ozorowski, Leigh M Sewall, Hongmei Gao, Joel D Allen, Bartek Nogal, Murillo Silva, Jinal Bhiman, Matthias Pauthner, Darrell J Irvine, David Montefiori, Max Crispin, Dennis R Burton, Guido Silvestri, Shane Crotty, Andrew B Ward | NPJ Vaccines | 2024-07-12 |
| Bacteriophage Φ21's receptor-binding protein evolves new functions through destabilizing mutations that generate non-genetic phenotypic heterogeneity. | Krista R Gerbino, Joshua M Borin, Sarah M Ardell, Justin J Lee, Kevin D Corbett, Justin R Meyer | Virus Evolution | 2024-07-11 |
| Dietary Iron Intake Has Long-Term Effects on the Fecal Metabolome and Microbiome. | Anastasiia Kostenko, Simone Zuffa, Hui Zhi, Kevin Mildau, Manuela Raffatellu, Pieter C Dorrestein, Allegra T Aron | Metallomics : Integrated Biometal Science | 2024-07-11 |
| Application of Novel Biomarkers in MASLD: Precision Medicine Based Approach. | Nimish Thakral, Hailemichael Desalegn, Luis Antonio Diaz, Daniel Cabrera, Rohit Loomba, Marco Arrese, Juan Pablo Arab | Seminars In Liver Disease | 2024-07-11 |
| RIG-I-like receptor DRH-1 signals via CARDs to activate antiviral immunity in intestinal cells. | Lakshmi E Batachari, Alyssa Y Dai, Emily R Troemel | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2024-07-09 |
| Impact of diet change on the gut microbiome of common marmosets (). | Cassandra Tang-Wing, Ipsita Mohanty, MacKenzie Bryant, Katherine Makowski, Daira Melendez, Pieter C Dorrestein, Rob Knight, Andrés Mauricio Caraballo-Rodríguez, Celeste Allaband, Keith Jenné | MSystems | 2024-07-08 |
| Global prevalence, clinical characteristics, surveillance, treatment allocation, and outcomes of alcohol-associated hepatocellular carcinoma. | Rebecca Wenling Zeng, Christen En Ya Ong, Elden Yen Hng Ong, Charlotte Hui Chung, Wen Hui Lim, Jieling Xiao, Pojsakorn Danpanichkul, Jia Hao Law, Nicholas Syn, Douglas Chee, Alfred Wei Chieh Kow, Sung Won Lee, Hirokazu Takahashi, Takumi Kawaguchi, Nobuharu Tamaki, Yock Young Dan, Atsushi Nakajima, Karn Wijarnpreecha, Mark D Muthiah, Mazen Noureddin, Rohit Loomba, George N Ioannou, Darren Jun Hao Tan, Cheng Han Ng, Daniel Q Huang | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2024-07-08 |
| Integrative genomic reconstruction of carbohydrate utilization networks in bifidobacteria: global trends, local variability, and dietary adaptation. | Aleksandr A Arzamasov, Dmitry A Rodionov, Matthew C Hibberd, Janaki L Guruge, Marat D Kazanov, Semen A Leyn, James E Kent, Kristija Sejane, Lars Bode, Michael J Barratt, Jeffrey I Gordon, Andrei L Osterman | BioRxiv : The Preprint Server For Biology | 2024-07-07 |
| Orsay Virus Infection in Caenorhabditis elegans. | Lakshmi E Batachari, Mario Bardan Sarmiento, Nicole Wernet, Emily R Troemel | Current Protocols | 2024-07-05 |
| More evolvable bacteriophages better suppress their host. | Elijah K Horwitz, Hannah M Strobel, Jason Haiso, Justin R Meyer | Evolutionary Applications | 2024-07-04 |
| An intron endonuclease facilitates interference competition between coinfecting viruses. | Erica A Birkholz, Chase J Morgan, Thomas G Laughlin, Rebecca K Lau, Amy Prichard, Sahana Rangarajan, Gabrielle N Meza, Jina Lee, Emily Armbruster, Sergey Suslov, Kit Pogliano, Justin R Meyer, Elizabeth Villa, Kevin D Corbett, Joe Pogliano | Science (New York, N.Y.) | 2024-07-04 |
| Feasibility of Home Collection for Urogenital Microbiome Samples. | Emily S Lukacz, Cynthia S Fok, MacKenzie Bryant, Dulce P Rodriguez-Ponciano, Melanie R Meister, Margaret G Mueller, Cora E Lewis, Jerry L Lowder, Ariana L Smith, Ann Stapleton, Amy Ayala, Ratna Pakpahan, Sarah Hortsch, Daniel McDonald, Sara Putnam, Kyle Rudser, Se Jin Song, Rob Knight, Linda Brubaker, | Urogynecology (Philadelphia, Pa.) | 2024-07-03 |
| PI3Kγ inhibition circumvents inflammation and vascular leak in SARS-CoV-2 and other infections. | Ryan M Shepard, Anghesom Ghebremedhin, Isaraphorn Pratumchai, Sally R Robinson, Courtney Betts, Jingjing Hu, Roman Sasik, Kathleen M Fisch, Jaroslav Zak, Hui Chen, Marc Paradise, Jason Rivera, Mohammad Amjad, Satoshi Uchiyama, Hideya Seo, Alejandro D Campos, Denise Ann Dayao, Saul Tzipori, Cesar Piedra-Mora, Soumita Das, Farnaz Hasteh, Hana Russo, Xin Sun, Le Xu, Laura Crotty E Alexander, Jason M Duran, Mazen Odish, Victor Pretorius, Nell C Kirchberger, Shao-Ming Chin, Tami Von Schalscha, David Cheresh, John D Morrey, Rossitza Alargova, Brenda O'Connell, Theodore A Martinot, Sandip P Patel, Victor Nizet, Amanda J Martinot, Lisa M Coussens, John R Teijaro, Judith A Varner | Science Translational Medicine | 2024-07-03 |
| Early Viral Dynamics Predict Human Immunodeficiency Virus Posttreatment Control After Analytic Treatment Interruption. | Gesham Magombedze, Elena Vendrame, Devi SenGupta, Romas Geleziunas, Susan Little, Davey Smith, Bruce Walker, Jean-Pierre Routy, Frederick M Hecht, Tae-Wook Chun, Michael Sneller, Jonathan Z Li, Steven G Deeks, Michael J Peluso | The Journal Of Infectious Diseases | 2024-07-02 |
| An efficient -inducible CRISPR interference system for group A genetic analysis and pathogenesis studies. | Elisabet Bjånes, Alexandra Stream, Axel B Janssen, Paddy S Gibson, Afonso M Bravo, Samira Dahesh, Jonathon L Baker, Andrew Varble, Victor Nizet, Jan-Willem Veening | MBio | 2024-07-02 |
| Time of sample collection is critical for the replicability of microbiome analyses. | Celeste Allaband, Amulya Lingaraju, Stephany Flores Ramos, Tanya Kumar, Haniyeh Javaheri, Maria D Tiu, Ana Carolina Dantas Machado, R Alexander Richter, Emmanuel Elijah, Gabriel G Haddad, Vanessa A Leone, Pieter C Dorrestein, Rob Knight, Amir Zarrinpar | Nature Metabolism | 2024-07-01 |
| Serum and CSF metabolomics analysis shows Mediterranean Ketogenic Diet mitigates risk factors of Alzheimer's disease. | Annalise Schweickart, Richa Batra, Bryan J Neth, Cameron Martino, Liat Shenhav, Anru R Zhang, Pixu Shi, Naama Karu, Kevin Huynh, Peter J Meikle, Leyla Schimmel, Amanda Hazel Dilmore, Kaj Blennow, Henrik Zetterberg, Colette Blach, Pieter C Dorrestein, Rob Knight, , Suzanne Craft, Rima Kaddurah-Daouk, Jan Krumsiek | NPJ Metabolic Health And Disease | 2024-07-01 |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | FEMS Microbiology Ecology | 2024-06-27 |
| Pangenome comparison of genomospecies unveils genetic diversity and ecological insights. | Renee E Oles, Marvic Carrillo Terrazas, Luke R Loomis, Chia-Yun Hsu, Caitlin Tribelhorn, Pedro Belda-Ferre, Allison C Ea, MacKenzie Bryant, Jocelyn A Young, Hannah C Carrow, William J Sandborn, Parambir S Dulai, Mamata Sivagnanam, David Pride, Rob Knight, Hiutung Chu | MSystems | 2024-06-27 |
| Host ecotype and rearing environment are the main drivers of threespine stickleback gut microbiota diversity in a naturalistic experiment. | Andreas Härer, Christine J Frazier, Diana J Rennison | Royal Society Open Science | 2024-06-26 |
| Retraction Note: Microbiome analyses of blood and tissues suggest cancer diagnostic approach. | Gregory D Poore, Evguenia Kopylova, Qiyun Zhu, Carolina Carpenter, Serena Fraraccio, Stephen Wandro, Tomasz Kosciolek, Stefan Janssen, Jessica Metcalf, Se Jin Song, Jad Kanbar, Sandrine Miller-Montgomery, Robert Heaton, Rana Mckay, Sandip Pravin Patel, Austin D Swafford, Rob Knight | Nature | 2024-06-26 |
| Leptochelins A-C, Cytotoxic Metallophores Produced by Geographically Dispersed Strains of Marine Cyanobacteria. | Nicole E Avalon, Mariana A Reis, Christopher C Thornburg, R Thomas Williamson, Daniel Petras, Allegra T Aron, George F Neuhaus, Momen Al-Hindy, Jana Mitrevska, Leonor Ferreira, João Morais, Yasin El Abiead, Evgenia Glukhov, Kelsey L Alexander, F Alexandra Vulpanovici, Matthew J Bertin, Syrena Whitner, Hyukjae Choi, Gabriella Spengler, Kirill Blinov, Ameen M Almohammadi, Lamiaa A Shaala, William R Kew, Ljiljana Paša-Tolić, Diaa T A Youssef, Pieter C Dorrestein, Vitor Vasconcelos, Lena Gerwick, Kerry L McPhail, William H Gerwick | Journal Of The American Chemical Society | 2024-06-25 |
| Strain-specific gut microbial signatures in type 2 diabetes identified in a cross-cohort analysis of 8,117 metagenomes. | Zhendong Mei, Fenglei Wang, Amrisha Bhosle, Danyue Dong, Raaj Mehta, Andrew Ghazi, Yancong Zhang, Yuxi Liu, Ehud Rinott, Siyuan Ma, Eric B Rimm, Martha Daviglus, Walter C Willett, Rob Knight, Frank B Hu, Qibin Qi, Andrew T Chan, Robert D Burk, Meir J Stampfer, Iris Shai, Robert C Kaplan, Curtis Huttenhower, Dong D Wang | Nature Medicine | 2024-06-25 |
| Synthetic lethality and the minimal genome size problem. | Sara Rahiminejad, Bianca De Sanctis, Pavel Pevzner, Arcady Mushegian | MSphere | 2024-06-21 |
| Proteome allocation is linked to transcriptional regulation through a modularized transcriptome. | Arjun Patel, Dominic McGrosso, Ying Hefner, Anaamika Campeau, Anand V Sastry, Svetlana Maurya, Kevin Rychel, David J Gonzalez, Bernhard O Palsson | Nature Communications | 2024-06-19 |
| Small molecule in situ resin capture provides a compound first approach to natural product discovery. | Alexander Bogdanov, Mariam N Salib, Alexander B Chase, Heinz Hammerlindl, Mitchell N Muskat, Stephanie Luedtke, Elany Barbosa da Silva, Anthony J O'Donoghue, Lani F Wu, Steven J Altschuler, Tadeusz F Molinski, Paul R Jensen | Nature Communications | 2024-06-19 |
| Dietary Acculturation Is Associated With Altered Gut Microbiome, Circulating Metabolites, and Cardiovascular Disease Risk in US Hispanics and Latinos: Results From HCHS/SOL. | Yi Wang, Guo-Chong Chen, Zheng Wang, Kai Luo, Yanbo Zhang, Yang Li, Amanda C McClain, Marta M Jankowska, Krista M Perreira, Josiemer Mattei, Carmen R Isasi, Maria M Llabre, Bharat Thyagarajan, Martha L Daviglus, Linda Van Horn, David Goldsztajn Farelo, Luis E Maldonado, Steven R Levine, Bing Yu, Eric Boerwinkle, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi, Brandilyn A Peters | Circulation | 2024-06-19 |
| Engineering plasmid copy number heterogeneity for dynamic microbial adaptation. | Shalni Kumar, Andrew Lezia, Jeff Hasty | Nature Microbiology | 2024-06-18 |
| In vitro evolution and whole genome analysis to study chemotherapy drug resistance in haploid human cells. | Juan Carlos Jado, Michelle Dow, Krypton Carolino, Adam Klie, Gregory J Fonseca, Trey Ideker, Hannah Carter, Elizabeth A Winzeler | Scientific Reports | 2024-06-18 |
| Author Correction: Vaccination induces broadly neutralizing antibody precursors to HIV gp41. | Torben Schiffner, Ivy Phung, Rashmi Ray, Adriana Irimia, Ming Tian, Olivia Swanson, Jeong Hyun Lee, Chang-Chun D Lee, Ester Marina-Zárate, So Yeon Cho, Jiachen Huang, Gabriel Ozorowski, Patrick D Skog, Andreia M Serra, Kimmo Rantalainen, Joel D Allen, Sabyasachi Baboo, Oscar L Rodriguez, Sunny Himansu, Jianfu Zhou, Jonathan Hurtado, Claudia T Flynn, Katherine McKenney, Colin Havenar-Daughton, Swati Saha, Kaitlyn Shields, Steven Schultze, Melissa L Smith, Chi-Hui Liang, Laura Toy, Simone Pecetta, Ying-Cing Lin, Jordan R Willis, Fabian Sesterhenn, Daniel W Kulp, Xiaozhen Hu, Christopher A Cottrell, Xiaoya Zhou, Jennifer Ruiz, Xuesong Wang, Usha Nair, Kathrin H Kirsch, Hwei-Ling Cheng, Jillian Davis, Oleksandr Kalyuzhniy, Alessia Liguori, Jolene K Diedrich, Julia T Ngo, Vanessa Lewis, Nicole Phelps, Ryan D Tingle, Skye Spencer, Erik Georgeson, Yumiko Adachi, Michael Kubitz, Saman Eskandarzadeh, Marc A Elsliger, Rama R Amara, Elise Landais, Bryan Briney, Dennis R Burton, Diane G Carnathan, Guido Silvestri, Corey T Watson, John R Yates, James C Paulson, Max Crispin, Gevorg Grigoryan, Andrew B Ward, Devin Sok, Frederick W Alt, Ian A Wilson, Facundo D Batista, Shane Crotty, William R Schief | Nature Immunology | 2024-06-14 |
| The Natural History of Post-Chikungunya Viral Arthritis Disease Activity and T-cell Immunology: A Cohort Study. | Aileen Yu-Hen Chang, Alfonso Sucerquia Hernández, Jose Forero Mejía, Sarah Renee Tritsch, Evelyn Mendoza-Torres, Liliana Encinales, Andres Cadena Bonfanti, Abigale Marie Proctor, Gary Leonard Simon, Samuel Joseph Simmens, Gary Steven Firestein | Journal Of Cellular Immunology | 2024-06-14 |
| Scaling DEPP phylogenetic placement to ultra-large reference trees: a tree-aware ensemble approach. | Yueyu Jiang, Daniel McDonald, Daniela Perry, Rob Knight, Siavash Mirarab | Bioinformatics (Oxford, England) | 2024-06-13 |
| Conservation of C4BP-binding sequence patterns in Streptococcus pyogenes M and Enn proteins. | Piotr Kolesiński, Matthew McGowan, Anne Botteaux, Pierre R Smeesters, Partho Ghosh | The Journal Of Biological Chemistry | 2024-06-13 |
| Exploring the genetics of lithium response in bipolar disorders. | Marisol Herrera-Rivero, Mazda Adli, Kazufumi Akiyama, Nirmala Akula, Azmeraw T Amare, Raffaella Ardau, Bárbara Arias, Jean-Michel Aubry, Lena Backlund, Frank Bellivier, Antonio Benabarre, Susanne Bengesser, Abesh Kumar Bhattacharjee, Joanna M Biernacka, Armin Birner, Micah Cearns, Pablo Cervantes, Hsi-Chung Chen, Caterina Chillotti, Sven Cichon, Scott R Clark, Francesc Colom, Cristiana Cruceanu, Piotr M Czerski, Nina Dalkner, Franziska Degenhardt, Maria Del Zompo, J Raymond DePaulo, Bruno Etain, Peter Falkai, Ewa Ferensztajn-Rochowiak, Andreas J Forstner, Josef Frank, Louise Frisén, Mark A Frye, Janice M Fullerton, Carla Gallo, Sébastien Gard, Julie S Garnham, Fernando S Goes, Maria Grigoroiu-Serbanescu, Paul Grof, Ryota Hashimoto, Roland Hasler, Joanna Hauser, Urs Heilbronner, Stefan Herms, Per Hoffmann, Liping Hou, Yi-Hsiang Hsu, Stephane Jamain, Esther Jiménez, Jean-Pierre Kahn, Layla Kassem, Tadafumi Kato, John Kelsoe, Sarah Kittel-Schneider, Po-Hsiu Kuo, Ichiro Kusumi, Barbara König, Gonzalo Laje, Mikael Landén, Catharina Lavebratt, Marion Leboyer, Susan G Leckband, Mario Maj, Mirko Manchia, Cynthia Marie-Claire, Lina Martinsson, Michael J McCarthy, Susan L McElroy, Vincent Millischer, Marina Mitjans, Francis M Mondimore, Palmiero Monteleone, Caroline M Nievergelt, Tomas Novák, Markus M Nöthen, Claire O'Donovan, Norio Ozaki, Sergi Papiol, Andrea Pfennig, Claudia Pisanu, James B Potash, Andreas Reif, Eva Reininghaus, Hélène Richard-Lepouriel, Gloria Roberts, Guy A Rouleau, Janusz K Rybakowski, Martin Schalling, Peter R Schofield, Klaus Oliver Schubert, Eva C Schulte, Barbara W Schweizer, Giovanni Severino, Tatyana Shekhtman, Paul D Shilling, Katzutaka Shimoda, Christian Simhandl, Claire M Slaney, Alessio Squassina, Thomas Stamm, Pavla Stopkova, Fabian Streit, Fasil Tekola-Ayele, Anbupalam Thalamuthu, Alfonso Tortorella, Gustavo Turecki, Julia Veeh, Eduard Vieta, Biju Viswanath, Stephanie H Witt, Peter P Zandi, Martin Alda, Michael Bauer, Francis J McMahon, Philip B Mitchell, Marcella Rietschel, Thomas G Schulze, Bernhard T Baune | International Journal Of Bipolar Disorders | 2024-06-12 |
| Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium. | Garrett Dunlap, Aaron Wagner, Nida Meednu, Ruoqiao Wang, Fan Zhang, Jabea Cyril Ekabe, Anna Helena Jonsson, Kevin Wei, Saori Sakaue, Aparna Nathan, , Vivian P Bykerk, Laura T Donlin, Susan M Goodman, Gary S Firestein, David L Boyle, V Michael Holers, Larry W Moreland, Darren Tabechian, Costantino Pitzalis, Andrew Filer, Soumya Raychaudhuri, Michael B Brenner, Juilee Thakar, Andrew McDavid, Deepak A Rao, Jennifer H Anolik | Nature Communications | 2024-06-11 |
| A simple rule for predicting function of microbial communities. | Sergey Kryazhimskiy | Cell | 2024-06-08 |
| Effects of intensive lifestyle changes on the progression of mild cognitive impairment or early dementia due to Alzheimer's disease: a randomized, controlled clinical trial. | Dean Ornish, Catherine Madison, Miia Kivipelto, Colleen Kemp, Charles E McCulloch, Douglas Galasko, Jon Artz, Dorene Rentz, Jue Lin, Kim Norman, Anne Ornish, Sarah Tranter, Nancy DeLamarter, Noel Wingers, Carra Richling, Rima Kaddurah-Daouk, Rob Knight, Daniel McDonald, Lucas Patel, Eric Verdin, Rudolph E Tanzi, Steven E Arnold | Alzheimer's Research & Therapy | 2024-06-07 |
| Association between butyrate-producing gut bacteria and the risk of infectious disease hospitalisation: results from two observational, population-based microbiome studies. | Robert F J Kullberg, Irina Wikki, Bastiaan W Haak, Anni Kauko, Henrike Galenkamp, Hessel Peters-Sengers, Joe M Butler, Aki S Havulinna, Joonatan Palmu, Daniel McDonald, Chouaib Benchraka, Mahmoud I Abdel-Aziz, Maria Prins, Anke H Maitland van der Zee, Bert-Jan van den Born, Pekka Jousilahti, Willem M de Vos, Veikko Salomaa, Rob Knight, Leo Lahti, Max Nieuwdorp, Teemu Niiranen, W Joost Wiersinga | The Lancet. Microbe | 2024-06-07 |
| A Prebiotic Diet Containing Galactooligosaccharides and Polydextrose Produces Dynamic and Reproducible Changes in the Gut Microbial Ecosystem in Male Rats. | Robert S Thompson, Samuel J Bowers, Fernando Vargas, Shelby Hopkins, Tel Kelley, Antonio Gonzalez, Christopher A Lowry, Pieter C Dorrestein, Martha Hotz Vitaterna, Fred W Turek, Rob Knight, Kenneth P Wright, Monika Fleshner | Nutrients | 2024-06-06 |
| A treasure trove of 1034 actinomycete genomes. | Tue Sparholt Jørgensen, Omkar S Mohite, Eva B Sterndorff, Maria Alvarez-Arevalo, Kai Blin, Thomas J Booth, Pep Charusanti, David Faurdal, Troels Ø Hansen, Matin Nuhamunada, Anna-Sophie Mourched, Bernhard Ø Palsson, Tilmann Weber | Nucleic Acids Research | 2024-06-04 |
| The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions. | Christopher Dalldorf, Kevin Rychel, Richard Szubin, Ying Hefner, Arjun Patel, Daniel C Zielinski, Bernhard O Palsson | MSystems | 2024-06-03 |
| Endogenous ethanol production in health and disease. | Abraham S Meijnikman, Max Nieuwdorp, Bernd Schnabl | Nature Reviews. Gastroenterology & Hepatology | 2024-06-03 |
| Outcomes of SARS-CoV-2 and seasonal viruses among 2 million adults hospitalized for severe acute respiratory infection during the COVID-19 pandemic in Brazil. | Lilian M Diniz, Cristiane S Dias, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Clara C Pinhati, Stella C Galante, Isadora O Yan, Hercílio Martelli-Júnior, Eduardo A Oliveira | The Journal Of Infectious Diseases | 2024-05-31 |
| Exploring roles of the chitinase ChiC in modulating virulence phenotypes. | Per Kristian Thorén Edvardsen, Fatemeh Askarian, Raymond Zurich, Victor Nizet, Gustav Vaaje-Kolstad | Microbiology Spectrum | 2024-05-31 |
| Deciphering nutritional stress responses via knowledge-enriched transcriptomics for microbial engineering. | Jongoh Shin, Daniel C Zielinski, Bernhard O Palsson | Metabolic Engineering | 2024-05-31 |
| Affinity gaps among B cells in germinal centers drive the selection of MPER precursors. | Rashmi Ray, Torben Schiffner, Xuesong Wang, Yu Yan, Kimmo Rantalainen, Chang-Chun David Lee, Shivang Parikh, Raphael A Reyes, Gordon A Dale, Ying-Cing Lin, Simone Pecetta, Sophie Giguere, Olivia Swanson, Sven Kratochvil, Eleonora Melzi, Ivy Phung, Lisa Madungwe, Oleksandr Kalyuzhniy, John Warner, Stephanie R Weldon, Ryan Tingle, Edward Lamperti, Kathrin H Kirsch, Nicole Phelps, Erik Georgeson, Yumiko Adachi, Michael Kubitz, Usha Nair, Shane Crotty, Ian A Wilson, William R Schief, Facundo D Batista | Nature Immunology | 2024-05-30 |
| Vaccination induces broadly neutralizing antibody precursors to HIV gp41. | Torben Schiffner, Ivy Phung, Rashmi Ray, Adriana Irimia, Ming Tian, Olivia Swanson, Jeong Hyun Lee, Chang-Chun D Lee, Ester Marina-Zárate, So Yeon Cho, Jiachen Huang, Gabriel Ozorowski, Patrick D Skog, Andreia M Serra, Kimmo Rantalainen, Joel D Allen, Sabyasachi Baboo, Oscar L Rodriguez, Sunny Himansu, Jianfu Zhou, Jonathan Hurtado, Claudia T Flynn, Katherine McKenney, Colin Havenar-Daughton, Swati Saha, Kaitlyn Shields, Steven Schulze, Melissa L Smith, Chi-Hui Liang, Laura Toy, Simone Pecetta, Ying-Cing Lin, Jordan R Willis, Fabian Sesterhenn, Daniel W Kulp, Xiaozhen Hu, Christopher A Cottrell, Xiaoya Zhou, Jennifer Ruiz, Xuesong Wang, Usha Nair, Kathrin H Kirsch, Hwei-Ling Cheng, Jillian Davis, Oleksandr Kalyuzhniy, Alessia Liguori, Jolene K Diedrich, Julia T Ngo, Vanessa Lewis, Nicole Phelps, Ryan D Tingle, Skye Spencer, Erik Georgeson, Yumiko Adachi, Michael Kubitz, Saman Eskandarzadeh, Marc A Elsliger, Rama R Amara, Elise Landais, Bryan Briney, Dennis R Burton, Diane G Carnathan, Guido Silvestri, Corey T Watson, John R Yates, James C Paulson, Max Crispin, Gevorg Grigoryan, Andrew B Ward, Devin Sok, Frederick W Alt, Ian A Wilson, Facundo D Batista, Shane Crotty, William R Schief | Nature Immunology | 2024-05-30 |
| Microbiologist in the Clinic: Postmenopausal Woman with Chronic OAB and Positive Urine Culture. | Linda Brubaker, Harry Horsley, Rajvinder Khasriya, Alan J Wolfe | International Urogynecology Journal | 2024-05-27 |
| Comparative Metabolomics and Microbiome Analysis of Ethanol versus OMNImet/gene•GUT Fecal Stabilization. | Heidi Isokääntä, Lucas Pinto da Silva, Naama Karu, Teemu Kallonen, Anna-Katariina Aatsinki, Thomas Hankemeier, Leyla Schimmel, Edgar Diaz, Tuulia Hyötyläinen, Pieter C Dorrestein, Rob Knight, Matej Orešič, Rima Kaddurah-Daouk, Alex M Dickens, Santosh Lamichhane | Analytical Chemistry | 2024-05-23 |
| Environmental metabolomics characterization of modern stromatolites and annotation of ibhayipeptolides. | George F Neuhaus, Allegra T Aron, Eric W Isemonger, Daniel Petras, Samantha C Waterworth, Luthando S Madonsela, Emily C Gentry, Xavier Siwe Noundou, Jarmo-Charles J Kalinski, Alexandros Polyzois, Julius C Habiyaremye, Margaret A Redick, Jason C Kwan, Rosemary A Dorrington, Pieter C Dorrestein, Kerry L McPhail | PloS One | 2024-05-23 |
| SARS-CoV-2 breakthrough infections enhance T cell response magnitude, breadth, and epitope repertoire. | Alison Tarke, Parham Ramezani-Rad, Tertuliano Alves Pereira Neto, Yeji Lee, Vanessa Silva-Moraes, Benjamin Goodwin, Nathaniel Bloom, Leila Siddiqui, Liliana Avalos, April Frazier, Zeli Zhang, Ricardo da Silva Antunes, Jennifer Dan, Shane Crotty, Alba Grifoni, Alessandro Sette | Cell Reports. Medicine | 2024-05-22 |
| The Prospect of Biomimetic Immune Cell Membrane-Coated Nanomedicines for Treatment of Serious Bacterial Infections and Sepsis. | Alexandria Hoffman, Victor Nizet | The Journal Of Pharmacology And Experimental Therapeutics | 2024-05-21 |
| Aquatic processing enhances the loss of aged carbon from drained and burned peatlands. | Jennifer C Bowen, Alison M Hoyt, Xiaomei Xu, Muhammad Nuriman, Gusti Z Anshari, Putri Juliandini Wahyudio, Lihini I Aluwihare | Global Change Biology | 2024-05-21 |
| Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates. | Jon M Steichen, Ivy Phung, Eugenia Salcedo, Gabriel Ozorowski, Jordan R Willis, Sabyasachi Baboo, Alessia Liguori, Christopher A Cottrell, Jonathan L Torres, Patrick J Madden, Krystal M Ma, Henry J Sutton, Jeong Hyun Lee, Oleksandr Kalyuzhniy, Joel D Allen, Oscar L Rodriguez, Yumiko Adachi, Tina-Marie Mullen, Erik Georgeson, Michael Kubitz, Alison Burns, Shawn Barman, Rohini Mopuri, Amanda Metz, Tasha K Altheide, Jolene K Diedrich, Swati Saha, Kaitlyn Shields, Steven E Schultze, Melissa L Smith, Torben Schiffner, Dennis R Burton, Corey T Watson, Steven E Bosinger, Max Crispin, John R Yates, James C Paulson, Andrew B Ward, Devin Sok, Shane Crotty, William R Schief | Science (New York, N.Y.) | 2024-05-17 |
| Associations of plant-based foods, red and processed meat, and dairy with gut microbiome in Finnish adults. | Mirkka Maukonen, Kari K Koponen, Aki S Havulinna, Niina E Kaartinen, Teemu Niiranen, Guillaume Méric, Anne-Maria Pajari, Rob Knight, Veikko Salomaa, Satu Männistö | European Journal Of Nutrition | 2024-05-16 |
| Viral and Symptom Rebound Following Anti-Severe Acute Respiratory Syndrome Coronavirus 2 Monoclonal Antibody Therapy in a Randomized Placebo-Controlled Trial. | Kara W Chew, Brooke McGinley, Carlee Moser, Jonathan Z Li, Teresa H Evering, Justin Ritz, Arzhang Cyrus Javan, David Margolis, David A Wohl, Michael D Hughes, Eric S Daar, Judith S Currier, Joseph J Eron, Davey M Smith, | The Journal Of Infectious Diseases | 2024-05-16 |
| Integrating clinical research into electronic health record workflows to support a learning health system. | Nicole H Goldhaber, Marni B Jacobs, Louise C Laurent, Rob Knight, Wenhong Zhu, Dean Pham, Allen Tran, Sandip P Patel, Michael Hogarth, Christopher A Longhurst | JAMIA Open | 2024-05-15 |
| Unveiling ecological/evolutionary insights in HIV viral load dynamics: Allowing random slopes to observe correlational changes to CpG-contents and other molecular and clinical predictors. | Rocío Carrasco-Hernández, Humberto Valenzuela-Ponce, Maribel Soto-Nava, Claudia García-Morales, Margarita Matías-Florentino, Joel O Wertheim, Davey M Smith, Gustavo Reyes-Terán, Santiago Ávila-Ríos | Epidemics | 2024-05-14 |
| The Urinary Microbiome: Improving Diagnostics and Management of Urinary Tract Infections in Adult Females. | Toby C Chai, Alan J Wolfe, Linda Brubaker | Infectious Disease Clinics Of North America | 2024-05-11 |
| Gut microbiota, blood metabolites, and left ventricular diastolic dysfunction in US Hispanics/Latinos. | Kai Luo, Alkis Taryn, Eun-Hye Moon, Brandilyn A Peters, Scott D Solomon, Martha L Daviglus, Mayank M Kansal, Bharat Thyagarajan, Marc D Gellman, Jianwen Cai, Robert D Burk, Rob Knight, Robert C Kaplan, Susan Cheng, Carlos J Rodriguez, Qibin Qi, Bing Yu | Microbiome | 2024-05-10 |
| Neutrophil Extracellular Traps (NETs): An Emerging Therapeutic Target to Improve Infectious Diseases Outcomes. | Angela Meier, George Sakoulas, Victor Nizet, Erlinda R Ulloa | The Journal Of Infectious Diseases | 2024-05-10 |
| Temporal and spatial diversity and abundance of cryptophytes in San Diego coastal waters. | Tristin Rammel, Maitreyi Nagarkar, Brian Palenik | Journal Of Phycology | 2024-05-09 |
| The workshops on computational applications in secondary metabolite discovery (CAiSMD). | Fidele Ntie-Kang, Donatus B Eni, Kiran K Telukunta, Victor Chukwudi Osamor, Samuel A Egieyeh, Miquel Duran-Frigola, Pankaj Mishra, Daniel M Shadrack, Lucas Paul, Thommas M Musyoka, Kai Blin, Mai M Farid, Ya Chen, Lucie Karelle Djogang, Jude Y Betow, Akachukwu Ibezim, Darshana Joshi, Alanis T Edwin, Mary A Chama, Jean Moto Ongagna, Pierre Valery Kemdoum Sinda, Jonathan A Metuge, Boris D Bekono, Mustafa A Isa, José L Medina-Franco, Tilmann Weber, Pieter C Dorrestein, Dusanka Janezic, Özlem Tastan Bishop, Jutta Ludwig-Müller | Physical Sciences Reviews | 2024-05-08 |
| SRX3177, a CDK4/6-PI3K-BET inhibitor, in combination with an RdRp inhibitor, Molnupiravir, or an entry inhibitor MU-UNMC-2, has potent antiviral activity against the Omicron variant of SARS-CoV-2. | Kabita Pandey, Arpan Acharya, Dhananjaya Pal, Prashant Jain, Kamal Singh, Donald L Durden, Tatiana G Kutateladze, Aniruddha J Deshpande, Siddappa N Byrareddy | Antiviral Research | 2024-05-08 |
| Researching COVID to enhance recovery (RECOVER) pediatric study protocol: Rationale, objectives and design. | Rachel S Gross, Tanayott Thaweethai, Erika B Rosenzweig, James Chan, Lori B Chibnik, Mine S Cicek, Amy J Elliott, Valerie J Flaherman, Andrea S Foulkes, Margot Gage Witvliet, Richard Gallagher, Maria Laura Gennaro, Terry L Jernigan, Elizabeth W Karlson, Stuart D Katz, Patricia A Kinser, Lawrence C Kleinman, Michelle F Lamendola-Essel, Joshua D Milner, Sindhu Mohandas, Praveen C Mudumbi, Jane W Newburger, Kyung E Rhee, Amy L Salisbury, Jessica N Snowden, Cheryl R Stein, Melissa S Stockwell, Kelan G Tantisira, Moriah E Thomason, Dongngan T Truong, David Warburton, John C Wood, Shifa Ahmed, Almary Akerlundh, Akram N Alshawabkeh, Brett R Anderson, Judy L Aschner, Andrew M Atz, Robin L Aupperle, Fiona C Baker, Venkataraman Balaraman, Dithi Banerjee, Deanna M Barch, Arielle Baskin-Sommers, Sultana Bhuiyan, Marie-Abele C Bind, Amanda L Bogie, Tamara Bradford, Natalie C Buchbinder, Elliott Bueler, Hülya Bükülmez, B J Casey, Linda Chang, Maryanne Chrisant, Duncan B Clark, Rebecca G Clifton, Katharine N Clouser, Lesley Cottrell, Kelly Cowan, Viren D'Sa, Mirella Dapretto, Soham Dasgupta, Walter Dehority, Audrey Dionne, Kirsten B Dummer, Matthew D Elias, Shari Esquenazi-Karonika, Danielle N Evans, E Vincent S Faustino, Alexander G Fiks, Daniel Forsha, John J Foxe, Naomi P Friedman, Greta Fry, Sunanda Gaur, Dylan G Gee, Kevin M Gray, Stephanie Handler, Ashraf S Harahsheh, Keren Hasbani, Andrew C Heath, Camden Hebson, Mary M Heitzeg, Christina M Hester, Sophia Hill, Laura Hobart-Porter, Travis K F Hong, Carol R Horowitz, Daniel S Hsia, Matthew Huentelman, Kathy D Hummel, Katherine Irby, Joanna Jacobus, Vanessa L Jacoby, Pei-Ni Jone, David C Kaelber, Tyler J Kasmarcak, Matthew J Kluko, Jessica S Kosut, Angela R Laird, Jeremy Landeo-Gutierrez, Sean M Lang, Christine L Larson, Peter Paul C Lim, Krista M Lisdahl, Brian W McCrindle, Russell J McCulloh, Kimberly McHugh, Alan L Mendelsohn, Torri D Metz, Julie Miller, Elizabeth C Mitchell, Lerraughn M Morgan, Eva M Müller-Oehring, Erica R Nahin, Michael C Neale, Manette Ness-Cochinwala, Sheila M Nolan, Carlos R Oliveira, Onyekachukwu Osakwe, Matthew E Oster, R Mark Payne, Michael A Portman, Hengameh Raissy, Isabelle G Randall, Suchitra Rao, Harrison T Reeder, Johana M Rosas, Mark W Russell, Arash A Sabati, Yamuna Sanil, Alice I Sato, Michael S Schechter, Rangaraj Selvarangan, S Kristen Sexson Tejtel, Divya Shakti, Kavita Sharma, Lindsay M Squeglia, Shubika Srivastava, Michelle D Stevenson, Jacqueline Szmuszkovicz, Maria M Talavera-Barber, Ronald J Teufel, Deepika Thacker, Felicia Trachtenberg, Mmekom M Udosen, Megan R Warner, Sara E Watson, Alan Werzberger, Jordan C Weyer, Marion J Wood, H Shonna Yin, William T Zempsky, Emily Zimmerman, Benard P Dreyer, | PloS One | 2024-05-07 |
| Generation of 'semi-guided' cortical organoids with complex neural oscillations. | Michael Q Fitzgerald, Tiffany Chu, Francesca Puppo, Rebeca Blanch, Miguel Chillón, Shankar Subramaniam, Alysson R Muotri | Nature Protocols | 2024-05-03 |
| Universal digital high-resolution melting for the detection of pulmonary mold infections. | Tyler Goshia, April Aralar, Nathan Wiederhold, Jeffrey D Jenks, Sanjay R Mehta, Aprajita Karmakar, Monish E S, Ankit Sharma, Haoxiang Sun, Refilwe Kebadireng, P Lewis White, Mridu Sinha, Martin Hoenigl, Stephanie I Fraley | Journal Of Clinical Microbiology | 2024-05-02 |
| An essential and highly selective protein import pathway encoded by nucleus-forming phage. | Chase J Morgan, Eray Enustun, Emily G Armbruster, Erica A Birkholz, Amy Prichard, Taylor Forman, Ann Aindow, Wichanan Wannasrichan, Sela Peters, Koe Inlow, Isabelle L Shepherd, Alma Razavilar, Vorrapon Chaikeeratisak, Benjamin A Adler, Brady F Cress, Jennifer A Doudna, Kit Pogliano, Elizabeth Villa, Kevin D Corbett, Joe Pogliano | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2024-04-30 |
| Engineered bacterial therapeutics for detecting and treating CRC. | Nicole Siguenza, Arianna Brevi, Joanna T Zhang, Arman Pabani, Abhinav Bhushan, Moumita Das, Yousong Ding, Jeff Hasty, Pradipta Ghosh, Amir Zarrinpar | Trends In Cancer | 2024-04-30 |
| Variability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols. | Samuel P Forry, Stephanie L Servetas, Jason G Kralj, Keng Soh, Michalis Hadjithomas, Raul Cano, Martha Carlin, Maria G de Amorim, Benjamin Auch, Matthew G Bakker, Thais F Bartelli, Juan P Bustamante, Ignacio Cassol, Mauricio Chalita, Emmanuel Dias-Neto, Aaron Del Duca, Daryl M Gohl, Jekaterina Kazantseva, Muyideen T Haruna, Peter Menzel, Bruno S Moda, Lorieza Neuberger-Castillo, Diana N Nunes, Isha R Patel, Rodrigo D Peralta, Adrien Saliou, Rolf Schwarzer, Samantha Sevilla, Isabella K T M Takenaka, Jeremy R Wang, Rob Knight, Dirk Gevers, Scott A Jackson | Scientific Reports | 2024-04-29 |
| The Effect of Retinoic Acid on Neutrophil Innate Immune Interactions With Cutaneous Bacterial Pathogens. | Alexandra Stream, Ross Corriden, Simon Döhrmann, Richard L Gallo, Victor Nizet, Ericka L Anderson | Infectious Microbes & Diseases | 2024-04-29 |
| Exploring the role of neuronal-enriched extracellular vesicle miR-93 and interoception in major depressive disorder. | Kaiping Burrows, Leandra K Figueroa-Hall, Jennifer L Stewart, Ahlam M Alarbi, Rayus Kuplicki, Bethany N Hannafon, Chibing Tan, Victoria B Risbrough, Brett A McKinney, Rajagopal Ramesh, Teresa A Victor, Robin Aupperle, Jonathan Savitz, T Kent Teague, Sahib S Khalsa, Martin P Paulus | Translational Psychiatry | 2024-04-27 |
| Distinguishing Molecular Properties of OAT, OATP, and MRP Drug Substrates by Machine Learning. | Anisha K Nigam, Jeremiah D Momper, Anupam Anand Ojha, Sanjay K Nigam | Pharmaceutics | 2024-04-26 |
| Disparities in Metabolic Syndrome and Neurocognitive Function Among Older Hispanics/Latinos with Human Immunodeficiency Virus. | María J Marquine, Lily Kamalyan, Zvinka Z Zlatar, David Yassai-Gonzalez, Alán Perez-Tejada, Anya Umlauf, Tala Al-Rousan, Verónica González, Jordana Breton, Lesley A Guareña, Lilla Brody, Mariana Cherner, Ronald J Ellis, Maria Luisa Zúñiga, Dan M Mungas, Raeanne C Moore, David J Moore, Valerie Wojna, Rasheeda K Hall, Donald R Franklin, Robert K Heaton | AIDS Patient Care And STDs | 2024-04-25 |
| Metabolic and inflammatory perturbation of diabetes associated gut dysbiosis in people living with and without HIV infection. | Kai Luo, Brandilyn A Peters, Jee-Young Moon, Xiaonan Xue, Zheng Wang, Mykhaylo Usyk, David B Hanna, Alan L Landay, Michael F Schneider, Deborah Gustafson, Kathleen M Weber, Audrey French, Anjali Sharma, Kathryn Anastos, Tao Wang, Todd Brown, Clary B Clish, Robert C Kaplan, Rob Knight, Robert D Burk, Qibin Qi | Genome Medicine | 2024-04-20 |
| Modeling the emergence of viral resistance for SARS-CoV-2 during treatment with an anti-spike monoclonal antibody. | Tin Phan, Carolin Zitzmann, Kara W Chew, Davey M Smith, Eric S Daar, David A Wohl, Joseph J Eron, Judith S Currier, Michael D Hughes, Manish C Choudhary, Rinki Deo, Jonathan Z Li, Ruy M Ribeiro, Ruian Ke, Alan S Perelson, | PLoS Pathogens | 2024-04-18 |
| Iron limitation of heterotrophic bacteria in the California current system tracks relative availability of organic carbon and iron. | Lauren E Manck, Tyler H Coale, Brandon M Stephens, Kiefer O Forsch, Lihini I Aluwihare, Christopher L Dupont, Andrew E Allen, Katherine A Barbeau | The ISME Journal | 2024-04-16 |
| Serial adaptive laboratory evolution enhances mixed carbon metabolic capacity of Escherichia coli. | Kangsan Kim, Donghui Choe, Minjeong Kang, Sang-Hyeok Cho, Suhyung Cho, Ki Jun Jeong, Bernhard Palsson, Byung-Kwan Cho | Metabolic Engineering | 2024-04-16 |
| Improving microbial phylogeny with citizen science within a mass-market video game. | Roman Sarrazin-Gendron, Parham Ghasemloo Gheidari, Alexander Butyaev, Timothy Keding, Eddie Cai, Jiayue Zheng, Renata Mutalova, Julien Mounthanyvong, Yuxue Zhu, Elena Nazarova, Chrisostomos Drogaris, Kornél Erhart, , , Amélie Brouillette, Gabriel Richard, Randy Pitchford, Sébastien Caisse, Mathieu Blanchette, Daniel McDonald, Rob Knight, Attila Szantner, Jérôme Waldispühl | Nature Biotechnology | 2024-04-15 |
| Understanding the risks of co-exposures in a changing world: a case study of dual monitoring of the biotoxin domoic acid and Vibrio spp. in Pacific oyster. | Alle A Y Lie, Amity G Zimmer-Faust, Rachel E Diner, Emily Kunselman, Zachary Daniel, Kathryn Van Artsdalen, Mariana C Salas Garcia, Jack A Gilbert, Dana Shultz, Jeff Chokry, Kylie Langlois, Jayme Smith | Environmental Monitoring And Assessment | 2024-04-12 |
| Where do the pathogens that cause surgical site infections come from? | Jack A Gilbert, John Alverdy | Science Translational Medicine | 2024-04-10 |
| Dermal injury drives a skin to gut axis that disrupts the intestinal microbiome and intestinal immune homeostasis in mice. | Tatsuya Dokoshi, Yang Chen, Kellen J Cavagnero, Gibraan Rahman, Daniel Hakim, Samantha Brinton, Hana Schwarz, Elizabeth A Brown, Alan O'Neill, Yoshiyuki Nakamura, Fengwu Li, Nita H Salzman, Rob Knight, Richard L Gallo | Nature Communications | 2024-04-08 |
| Correction: Robustness of cancer microbiome signals over a broad range of methodological variation. | Gregory D Sepich-Poore, Daniel McDonald, Evguenia Kopylova, Caitlin Guccione, Qiyun Zhu, George Austin, Carolina Carpenter, Serena Fraraccio, Stephen Wandro, Tomasz Kosciolek, Stefan Janssen, Jessica L Metcalf, Se Jin Song, Jad Kanbar, Sandrine Miller-Montgomery, Robert Heaton, Rana Mckay, Sandip Pravin Patel, Austin D Swafford, Tal Korem, Rob Knight | Oncogene | 2024-04-05 |
| Occult hepatitis B virus infection and current perspectives on global WHO 2030 eradication. | Shanmugam Saravanan, Esaki M Shankar, Ramachandran Vignesh, Pitchaipillai Sankar Ganesh, Sathish Sankar, Vijayakumar Velu, Davey M Smith, Pachamuthu Balakrishnan, Dhivya Viswanathan, Rajakumar Govindasamy, Arcot R Venkateswaran | Journal Of Viral Hepatitis | 2024-04-05 |
| The changing metabolic landscape of bile acids - keys to metabolism and immune regulation. | Ipsita Mohanty, Celeste Allaband, Helena Mannochio-Russo, Yasin El Abiead, Lee R Hagey, Rob Knight, Pieter C Dorrestein | Nature Reviews. Gastroenterology & Hepatology | 2024-04-04 |
| A phenome-wide association and Mendelian randomisation study of alcohol use variants in a diverse cohort comprising over 3 million individuals. | Mariela V Jennings, José Jaime Martínez-Magaña, Natasia S Courchesne-Krak, Renata B Cupertino, Laura Vilar-Ribó, Sevim B Bianchi, Alexander S Hatoum, Elizabeth G Atkinson, Paola Giusti-Rodriguez, Janitza L Montalvo-Ortiz, Joel Gelernter, María Soler Artigas, , Sarah L Elson, Howard J Edenberg, Pierre Fontanillas, Abraham A Palmer, Sandra Sanchez-Roige | EBioMedicine | 2024-04-02 |
| IL-22-dependent responses and their role during infection. | Karine Melchior, Romana R Gerner, Suzana Hossain, Sean-Paul Nuccio, Cristiano Gallina Moreira, Manuela Raffatellu | Infection And Immunity | 2024-04-01 |
| Gut Microbiota and Blood Metabolites Related to Fiber Intake and Type 2 Diabetes. | Zheng Wang, Brandilyn A Peters, Bing Yu, Megan L Grove, Tao Wang, Xiaonan Xue, Bharat Thyagarajan, Martha L Daviglus, Eric Boerwinkle, Gang Hu, Yasmin Mossavar-Rahmani, Carmen R Isasi, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi | Circulation Research | 2024-03-28 |
| Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in fish. | Aaron Oliver, Sheila Podell, Linda Wegley Kelly, Wesley J Sparagon, Alvaro M Plominsky, Robert S Nelson, Lieve M L Laurens, Simona Augyte, Neil A Sims, Craig E Nelson, Eric E Allen | MBio | 2024-03-27 |
| Microbiota from human infants consuming secretors or non-secretors mothers' milk impacts the gut and immune system in mice. | Manoj Gurung, Brent Thomas Schlegel, Dhivyaa Rajasundaram, Renee Fox, Lars Bode, Tianming Yao, Stephen R Lindemann, Tanya LeRoith, Quentin D Read, Christy Simecka, Laura Carroll, Aline Andres, Laxmi Yeruva | MSystems | 2024-03-26 |
| A simple solid media assay for detection of synergy between bacteriophages and antibiotics. | Ethan Khong, Joseph J Oh, Julian M Jimenez, Roland Liu, Sage Dunham, Alisha Monsibais, Alison Rhoads, Pooja Ghatbale, Andrew Garcia, Ana Georgina Cobián Güemes, Alisha N Blanc, Megan Chiu, Peiting Kuo, Marissa Proost, Ahnika Kline, Saima Aslam, Robert T Schooley, Katrine Whiteson, Stephanie I Fraley, David T Pride | Microbiology Spectrum | 2024-03-25 |
| Integration of polygenic and gut metagenomic risk prediction for common diseases. | Yang Liu, Scott C Ritchie, Shu Mei Teo, Matti O Ruuskanen, Oleg Kambur, Qiyun Zhu, Jon Sanders, Yoshiki Vázquez-Baeza, Karin Verspoor, Pekka Jousilahti, Leo Lahti, Teemu Niiranen, Veikko Salomaa, Aki S Havulinna, Rob Knight, Guillaume Méric, Michael Inouye | Nature Aging | 2024-03-25 |
| Inflammatory Dietary Potential Is Associated with Vitamin Depletion and Gut Microbial Dysbiosis in Early Pregnancy. | Suzanne A Alvernaz, Elizabeth S Wenzel, Unnathi Nagelli, Lacey B Pezley, Bazil LaBomascus, Jack A Gilbert, Pauline M Maki, Lisa Tussing-Humphreys, Beatriz Peñalver Bernabé | Nutrients | 2024-03-24 |
| Review article: New developments in biomarkers and clinical drug development in alpha-1 antitrypsin deficiency-related liver disease. | Rohit Loomba, Ginger Clark, Jeff Teckman, Veeral Ajmera, Cynthia Behling, Mark Brantly, David Brenner, Jeanine D'Armiento, Michael W Fried, Janani S Iyer, Mattias Mandorfer, Don C Rockey, Monica Tincopa, Raj Vuppalanchi, Zobair Younossi, Aleksander Krag, Alice M Turner, Pavel Strnad | Alimentary Pharmacology & Therapeutics | 2024-03-22 |
| Peripheral neuronal activation shapes the microbiome and alters gut physiology. | Jessica A Griffiths, Bryan B Yoo, Peter Thuy-Boun, Victor J Cantu, Kelly C Weldon, Collin Challis, Michael J Sweredoski, Ken Y Chan, Taren M Thron, Gil Sharon, Annie Moradian, Gregory Humphrey, Qiyun Zhu, Justin P Shaffer, Dennis W Wolan, Pieter C Dorrestein, Rob Knight, Viviana Gradinaru, Sarkis K Mazmanian | Cell Reports | 2024-03-21 |
| Safety and Efficacy of SAB-185 for Nonhospitalized Adults With COVID-19: A Randomized Clinical Trial. | Kara W Chew, Babafemi O Taiwo, Carlee Moser, Eric S Daar, David Alain Wohl, Justin Ritz, Arzhang Cyrus Javan, Jonathan Z Li, William Fischer, Alexander L Greninger, Christoph Bausch, Thomas Luke, Robert Call, Gene Neytman, Mark J Giganti, Courtney V Fletcher, Michael D Hughes, Joseph J Eron, Judith S Currier, Davey M Smith, | The Journal Of Infectious Diseases | 2024-03-19 |
| Characterization of Treatment Resistance and Viral Kinetics in the Setting of Single-Active Versus Dual-Active Monoclonal Antibodies Against Severe Acute Respiratory Syndrome Coronavirus 2. | Manish C Choudhary, Rinki Deo, Teresa H Evering, Kara W Chew, Mark J Giganti, Carlee Moser, Justin Ritz, James Regan, James P Flynn, Charles R Crain, David Alain Wohl, Judith S Currier, Joseph J Eron, David Margolis, Qing Zhu, Lijie Zhon, Li Ya, Alexander L Greninger, Michael D Hughes, Davey Smith, Eric S Daar, Jonathan Z Li | The Journal Of Infectious Diseases | 2024-03-15 |
| Advancing the scale of synthetic biology via cross-species transfer of cellular functions enabled by iModulon engraftment. | Donghui Choe, Connor A Olson, Richard Szubin, Hannah Yang, Jaemin Sung, Adam M Feist, Bernhard O Palsson | Nature Communications | 2024-03-15 |
| Study protocol: Project 2VIDA! SARS-CoV-2 vaccine intervention delivery for adults in Southern California. | Britt Skaathun, Linda Salgin, Fatima A Muñoz, Gregory A Talavera, Davey M Smith, Jamila K Stockman, Sophie E O'Bryan, Daniel Ramirez, Cynthia James-Price, Argentina E Servin | Frontiers In Public Health | 2024-03-14 |
| Whole-body metabolic modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimer's disease. | Filippo Martinelli, Almut Heinken, Ann-Kristin Henning, Maria A Ulmer, Tim Hensen, Antonio González, Matthias Arnold, Sanjay Asthana, Kathrin Budde, Corinne D Engelman, Mehrbod Estaki, Hans-Jörgen Grabe, Margo B Heston, Sterling Johnson, Gabi Kastenmüller, Cameron Martino, Daniel McDonald, Federico E Rey, Ingo Kilimann, Olive Peters, Xiao Wang, Eike Jakob Spruth, Anja Schneider, Klaus Fliessbach, Jens Wiltfang, Niels Hansen, Wenzel Glanz, Katharina Buerger, Daniel Janowitz, Christoph Laske, Matthias H Munk, Annika Spottke, Nina Roy, Matthias Nauck, Stefan Teipel, Rob Knight, Rima F Kaddurah-Daouk, Barbara B Bendlin, Johannes Hertel, Ines Thiele | Scientific Reports | 2024-03-13 |
| Genome-wide association study identifies 30 obsessive-compulsive disorder associated loci. | Nora I Strom, Zachary F Gerring, Marco Galimberti, Dongmei Yu, Matthew W Halvorsen, Abdel Abdellaoui, Cristina Rodriguez-Fontenla, Julia M Sealock, Tim Bigdeli, Jonathan R Coleman, Behrang Mahjani, Jackson G Thorp, Katharina Bey, Christie L Burton, Jurjen J Luykx, Gwyneth Zai, Silvia Alemany, Christine Andre, Kathleen D Askland, Nerisa Banaj, Cristina Barlassina, Judith Becker Nissen, O Joseph Bienvenu, Donald Black, Michael H Bloch, Julia Boberg, Sigrid Børte, Rosa Bosch, Michael Breen, Brian P Brennan, Helena Brentani, Joseph D Buxbaum, Jonas Bybjerg-Grauholm, Enda M Byrne, Judit Cabana-Dominguez, Beatriz Camarena, Adrian Camarena, Carolina Cappi, Angel Carracedo, Miguel Casas, Maria Cristina Cavallini, Valentina Ciullo, Edwin H Cook, Jesse Crosby, Bernadette A Cullen, Elles J De Schipper, Richard Delorme, Srdjan Djurovic, Jason A Elias, Xavier Estivill, Martha J Falkenstein, Bengt T Fundin, Lauryn Garner, Chris German, Christina Gironda, Fernando S Goes, Marco A Grados, Jakob Grove, Wei Guo, Jan Haavik, Kristen Hagen, Kelly Harrington, Alexandra Havdahl, Kira D Höffler, Ana G Hounie, Donald Hucks, Christina Hultman, Magdalena Janecka, Eric Jenike, Elinor K Karlsson, Kara Kelley, Julia Klawohn, Janice E Krasnow, Kristi Krebs, Christoph Lange, Nuria Lanzagorta, Daniel Levey, Kerstin Lindblad-Toh, Fabio Macciardi, Brion Maher, Brittany Mathes, Evonne McArthur, Nathaniel McGregor, Nicole C McLaughlin, Sandra Meier, Euripedes C Miguel, Maureen Mulhern, Paul S Nestadt, Erika L Nurmi, Kevin S O'Connell, Lisa Osiecki, Olga Therese Ousdal, Teemu Palviainen, Nancy L Pedersen, Fabrizio Piras, Federica Piras, Sriramya Potluri, Raquel Rabionet, Alfredo Ramirez, Scott Rauch, Abraham Reichenberg, Mark A Riddle, Stephan Ripke, Maria C Rosário, Aline S Sampaio, Miriam A Schiele, Anne Heidi Skogholt, Laura G Sloofman G Sloofman, Jan Smit, Artigas María Soler, Laurent F Thomas, Eric Tifft, Homero Vallada, Nathanial van Kirk, Jeremy Veenstra-VanderWeele, Nienke N Vulink, Christopher P Walker, Ying Wang, Jens R Wendland, Bendik S Winsvold, Yin Yao, Hang Zhou, , , , , , Arpana Agrawal, Pino Alonso, Götz Berberich, Kathleen K Bucholz, Cynthia M Bulik, Danielle Cath, Damiaan Denys, Valsamma Eapen, Howard Edenberg, Peter Falkai, Thomas V Fernandez, Abby J Fyer, J M Gaziano, Dan A Geller, Hans J Grabe, Benjamin D Greenberg, Gregory L Hanna, Ian B Hickie, David M Hougaard, Norbert Kathmann, James Kennedy, Dongbing Lai, Mikael Landén, Stéphanie Le Hellard, Marion Leboyer, Christine Lochner, James T McCracken, Sarah E Medland, Preben B Mortensen, Benjamin M Neale, Humberto Nicolini, Merete Nordentoft, Michele Pato, Carlos Pato, David L Pauls, John Piacentini, Christopher Pittenger, Danielle Posthuma, Josep Antoni Ramos-Quiroga, Steven A Rasmussen, Margaret A Richter, David R Rosenberg, Stephan Ruhrmann, Jack F Samuels, Sven Sandin, Paul Sandor, Gianfranco Spalletta, Dan J Stein, S Evelyn Stewart, Eric A Storch, Barbara E Stranger, Maurizio Turiel, Thomas Werge, Ole A Andreassen, Anders D Børglum, Susanne Walitza, Kristian Hveem, Bjarne K Hansen, Christian P Rück, Nicholas G Martin, Lili Milani, Ole Mors, Ted Reichborn-Kjennerud, Marta Ribasés, Gerd Kvale, David Mataix-Cols, Katharina Domschke, Edna Grünblatt, Michael Wagner, John-Anker Zwart, Gerome Breen, Gerald Nestadt, Jaakko Kaprio, Paul D Arnold, Dorothy E Grice, James A Knowles, Helga Ask, Karin J Verweij, Lea K Davis, Dirk J Smit, James J Crowley, Jeremiah M Scharf, Murray B Stein, Joel Gelernter, Carol A Mathews, Eske M Derks, Manuel Mattheisen | MedRxiv : The Preprint Server For Health Sciences | 2024-03-13 |
| Discovery of Latent Cannabichromene Cyclase Activity in Marine Bacterial Flavoenzymes. | Anna C Love, Trevor N Purdy, Felix M Hubert, Ella J Kirwan, Darren C Holland, Bradley S Moore | ACS Synthetic Biology | 2024-03-08 |
| Conjugation to Native and Nonnative Triscatecholate Siderophores Enhances Delivery and Antibacterial Activity of a β-Lactam to Gram-Negative Bacterial Pathogens. | Rachel N Motz, Chuchu Guo, Artur Sargun, Gregory T Walker, Martina Sassone-Corsi, Manuela Raffatellu, Elizabeth M Nolan | Journal Of The American Chemical Society | 2024-03-08 |
| TRIF-IFN-I pathway in -induced gastric cancer in an accelerated murine disease model and patient biopsies. | Prerna Bali, Ivonne Lozano-Pope, Jonathan Hernandez, Monica V Estrada, Maripat Corr, Michael A Turner, Michael Bouvet, Christopher Benner, Marygorret Obonyo | IScience | 2024-03-08 |
| The underappreciated diversity of bile acid modifications. | Ipsita Mohanty, Helena Mannochio-Russo, Joshua V Schweer, Yasin El Abiead, Wout Bittremieux, Shipei Xing, Robin Schmid, Simone Zuffa, Felipe Vasquez, Valentina B Muti, Jasmine Zemlin, Omar E Tovar-Herrera, Sarah Moraïs, Dhimant Desai, Shantu Amin, Imhoi Koo, Christoph W Turck, Itzhak Mizrahi, Penny M Kris-Etherton, Kristina S Petersen, Jennifer A Fleming, Tao Huan, Andrew D Patterson, Dionicio Siegel, Lee R Hagey, Mingxun Wang, Allegra T Aron, Pieter C Dorrestein | Cell | 2024-03-06 |
| Microbial community composition predicts bacterial production across ocean ecosystems. | Elizabeth Connors, Avishek Dutta, Rebecca Trinh, Natalia Erazo, Srishti Dasarathy, Hugh Ducklow, J L Weissman, Yi-Chun Yeh, Oscar Schofield, Deborah Steinberg, Jed Fuhrman, Jeff S Bowman | The ISME Journal | 2024-03-05 |
| Longitudinal analysis of CSF HIV RNA in untreated people with HIV: Identification of CSF controllers. | Mattia Trunfio, Bin Tang, Oluwakemi Okwuegbuna, Jennifer E Iudicello, Ajay Bharti, David J Moore, Benjamin B Gelman, Susan Morgello, Payal B Patel, Leah H Rubin, Beau M Ances, Sara Gianella, Robert K Heaton, Ronald J Ellis, Scott L Letendre | Journal Of Medical Virology | 2024-03-05 |
| Methods for the discovery and characterization of octocoral terpene cyclases. | Immo Burkhardt, Lara Dürr, Natalie E Grayson, Bradley S Moore | Methods In Enzymology | 2024-03-05 |
| CRISPR-aided genome engineering for secondary metabolite biosynthesis in Streptomyces. | Yongjae Lee, Soonkyu Hwang, Woori Kim, Ji Hun Kim, Bernhard O Palsson, Byung-Kwan Cho | Journal Of Industrial Microbiology & Biotechnology | 2024-03-04 |
| Bacterial diversity and chemical ecology of natural product-producing bacteria from Great Salt Lake sediment. | Elijah R Bring Horvath, William J Brazelton, Min Cheol Kim, Reiko Cullum, Matthew A Mulvey, William Fenical, Jaclyn M Winter | ISME Communications | 2024-03-04 |
| Transforming Big Data into AI-ready data for nutrition and obesity research. | Diana M Thomas, Rob Knight, Jack A Gilbert, Marilyn C Cornelis, Marie G Gantz, Kate Burdekin, Kevin Cummiskey, Susan C J Sumner, Wimal Pathmasiri, Edward Sazonov, Kelley Pettee Gabriel, Erin E Dooley, Mark A Green, Andrew Pfluger, Samantha Kleinberg | Obesity (Silver Spring, Md.) | 2024-03-01 |
| Author Correction: Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP). | Sanjay Jain, Liming Pei, Jeffrey M Spraggins, Michael Angelo, James P Carson, Nils Gehlenborg, Fiona Ginty, Joana P Gonçalves, James S Hagood, John W Hickey, Neil L Kelleher, Louise C Laurent, Shin Lin, Yiing Lin, Huiping Liu, Alexandra Naba, Ernesto S Nakayasu, Wei-Jun Qian, Andrea Radtke, Paul Robson, Brent R Stockwell, Raf Van de Plas, Ioannis S Vlachos, Mowei Zhou, , Katy Börner, Michael P Snyder | Nature Cell Biology | 2024-03-01 |
| Harnessing the Power Within: Engineering the Microbiome for Enhanced Gynecologic Health. | Caitriona Brennan, Kristina Chan, Tanya Kumar, Erica Maissy, Linda Brubaker, Marisol I Dothard, Jack A Gilbert, Katharine E Gilbert, Amanda L Lewis, Varykina Thackray, Amir Zarrinpar, Rob Knight | Reproduction & Fertility | 2024-03-01 |
| Staphylococcus aureus: The Bug Behind the Itch in Atopic Dermatitis. | Richard L Gallo, Alexander R Horswill | The Journal Of Investigative Dermatology | 2024-02-29 |
| Author Correction: Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort. | Youwen Qin, Aki S Havulinna, Yang Liu, Pekka Jousilahti, Scott C Ritchie, Alex Tokolyi, Jon G Sanders, Liisa Valsta, Marta Brożyńska, Qiyun Zhu, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Rohit Loomba, Susan Cheng, Mohit Jain, Teemu Niiranen, Leo Lahti, Rob Knight, Veikko Salomaa, Michael Inouye, Guillaume Méric | Nature Genetics | 2024-02-29 |
| A guideline on the molecular ecosystem regulating ferroptosis. | Enyong Dai, Xin Chen, Andreas Linkermann, Xuejun Jiang, Rui Kang, Valerian E Kagan, Hülya Bayir, Wan Seok Yang, Ana J Garcia-Saez, Maria S Ioannou, Tobias Janowitz, Qitao Ran, Wei Gu, Boyi Gan, Dmitri V Krysko, Xiaofeng Zhu, Jiayi Wang, Stefan Krautwald, Shinya Toyokuni, Yangchun Xie, Florian R Greten, Qing Yi, Joel Schick, Jiao Liu, Dmitry I Gabrilovich, Jinbao Liu, Herbert J Zeh, Donna D Zhang, Minghua Yang, Juan Iovanna, Manfred Kopf, Timon E Adolph, Jen-Tsan Chi, Changfeng Li, Hidenori Ichijo, Michael Karin, Vijay G Sankaran, Weiping Zou, Lorenzo Galluzzi, Ashley I Bush, Binghui Li, Gerry Melino, Eric H Baehrecke, Michael T Lotze, Daniel J Klionsky, Brent R Stockwell, Guido Kroemer, Daolin Tang | Nature Cell Biology | 2024-02-29 |
| Reduction-to-synthesis: the dominant approach to genome-scale synthetic biology. | Kangsan Kim, Donghui Choe, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | Trends In Biotechnology | 2024-02-28 |
| More on Pre-Covid-19, SARS-CoV-2-Negative MIS-C. | Alessandra Franco, Adriana Tremoulet, Jane C Burns | The New England Journal Of Medicine | 2024-02-23 |
| CXCL12+ dermal fibroblasts promote neutrophil recruitment and host defense by recognition of IL-17. | Kellen J Cavagnero, Fengwu Li, Tatsuya Dokoshi, Teruaki Nakatsuji, Alan M O'Neill, Carlos Aguilera, Edward Liu, Michael Shia, Olive Osuoji, Tissa Hata, Richard L Gallo | The Journal Of Experimental Medicine | 2024-02-23 |
| Robustness of cancer microbiome signals over a broad range of methodological variation. | Gregory D Sepich-Poore, Daniel McDonald, Evguenia Kopylova, Caitlin Guccione, Qiyun Zhu, George Austin, Carolina Carpenter, Serena Fraraccio, Stephen Wandro, Tomasz Kosciolek, Stefan Janssen, Jessica L Metcalf, Se Jin Song, Jad Kanbar, Sandrine Miller-Montgomery, Robert Heaton, Rana Mckay, Sandip Pravin Patel, Austin D Swafford, Tal Korem, Rob Knight | Oncogene | 2024-02-23 |
| Lithium response in bipolar disorder is associated with focal adhesion and PI3K-Akt networks: a multi-omics replication study. | Anna H Ou, Sara B Rosenthal, Mazda Adli, Kazufumi Akiyama, Nirmala Akula, Martin Alda, Azmeraw T Amare, Raffaella Ardau, Bárbara Arias, Jean-Michel Aubry, Lena Backlund, Michael Bauer, Bernhard T Baune, Frank Bellivier, Antonio Benabarre, Susanne Bengesser, Abesh Kumar Bhattacharjee, Joanna M Biernacka, Pablo Cervantes, Guo-Bo Chen, Hsi-Chung Chen, Caterina Chillotti, Sven Cichon, Scott R Clark, Francesc Colom, David A Cousins, Cristiana Cruceanu, Piotr M Czerski, Clarissa R Dantas, Alexandre Dayer, Maria Del Zompo, Franziska Degenhardt, J Raymond DePaulo, Bruno Étain, Peter Falkai, Frederike Tabea Fellendorf, Ewa Ferensztajn-Rochowiak, Andreas J Forstner, Louise Frisén, Mark A Frye, Janice M Fullerton, Sébastien Gard, Julie S Garnham, Fernando S Goes, Maria Grigoroiu-Serbanescu, Paul Grof, Oliver Gruber, Ryota Hashimoto, Joanna Hauser, Urs Heilbronner, Stefan Herms, Per Hoffmann, Andrea Hofmann, Liping Hou, Stephane Jamain, Esther Jiménez, Jean-Pierre Kahn, Layla Kassem, Tadafumi Kato, Sarah Kittel-Schneider, Barbara König, Po-Hsiu Kuo, Ichiro Kusumi, Nina Lackner, Gonzalo Laje, Mikael Landén, Catharina Lavebratt, Marion Leboyer, Susan G Leckband, Carlos A López Jaramillo, Glenda MacQueen, Mario Maj, Mirko Manchia, Cynthia Marie-Claire, Lina Martinsson, Manuel Mattheisen, Michael J McCarthy, Susan L McElroy, Francis J McMahon, Philip B Mitchell, Marina Mitjans, Francis M Mondimore, Palmiero Monteleone, Caroline M Nievergelt, Markus M Nöthen, Tomas Novák, Urban Ösby, Norio Ozaki, Sergi Papiol, Roy H Perlis, Claudia Pisanu, James B Potash, Andrea Pfennig, Daniela Reich-Erkelenz, Andreas Reif, Eva Z Reininghaus, Marcella Rietschel, Guy A Rouleau, Janusz K Rybakowski, Martin Schalling, Peter R Schofield, K Oliver Schubert, Thomas G Schulze, Barbara W Schweizer, Florian Seemüller, Giovanni Severino, Tatyana Shekhtman, Paul D Shilling, Kazutaka Shimoda, Christian Simhandl, Claire M Slaney, Alessio Squassina, Thomas Stamm, Pavla Stopkova, Sarah K Tighe, Alfonso Tortorella, Gustavo Turecki, Eduard Vieta, Julia Volkert, Stephanie Witt, Naomi R Wray, Adam Wright, L Trevor Young, Peter P Zandi, John R Kelsoe | Translational Psychiatry | 2024-02-23 |
| Bacterial Resistance Response and Resource Availability Mediates Viral Coexistence. | Lisa Butt, Justin R Meyer, Richard J Lindsay, Robert E Beardmore, Ivana Gudelj | Journal Of Evolutionary Biology | 2024-02-22 |
| Lipocalin-2 expression identifies an intestinal regulatory neutrophil population during acute graft-versus-host disease. | Marie Czech, Sophia Schneider, Nina Peltokangas, Nadia El Khawanky, Sakhila Ghimire, Geoffroy Andrieux, Jan Hülsdünker, Máté Krausz, Michele Proietti, Lukas M Braun, Tamina Rückert, Marlene Langenbach, Dominik Schmidt, Ina Martin, Valentin Wenger, Enrique de Vega, Eileen Haring, Mohsen Pourjam, Dietmar Pfeifer, Annette Schmitt-Graeff, Bodo Grimbacher, Konrad Aumann, Brigitte Kircher, Herbert Tilg, Manuela Raffatellu, Erik Thiele Orberg, Georg Häcker, Justus Duyster, Natalie Köhler, Ernst Holler, David Nachbaur, Melanie Boerries, Romana R Gerner, Dominic Grün, Robert Zeiser | Science Translational Medicine | 2024-02-21 |
| A conserved antigen induces respiratory Th17-mediated broad serotype protection against pneumococcal superinfection. | Xue Liu, Laurye Van Maele, Laura Matarazzo, Daphnée Soulard, Vinicius Alves Duarte da Silva, Vincent de Bakker, Julien Dénéréaz, Florian P Bock, Michael Taschner, Jinzhao Ou, Stephan Gruber, Victor Nizet, Jean-Claude Sirard, Jan-Willem Veening | Cell Host & Microbe | 2024-02-21 |
| Universal Digital High-Resolution Melt Analysis for the Diagnosis of Bacteremia. | April Aralar, Tyler Goshia, Nanda Ramchandar, Shelley M Lawrence, Aparajita Karmakar, Ankit Sharma, Mridu Sinha, David T Pride, Peiting Kuo, Khrissa Lecrone, Megan Chiu, Karen K Mestan, Eniko Sajti, Michelle Vanderpool, Sarah Lazar, Melanie Crabtree, Yordanos Tesfai, Stephanie I Fraley | The Journal Of Molecular Diagnostics : JMD | 2024-02-21 |
| Serum aryl hydrocarbon receptor activity is associated with survival in patients with alcohol-associated hepatitis. | Tomoo Yamazaki, Tetsuya Kouno, Cynthia L Hsu, Phillipp Hartmann, Susan Mayo, Xinlian Zhang, Peter Stärkel, Francisco Bosques-Padilla, Elizabeth C Verna, Juan G Abraldes, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie L Shawcross, Alexandre Louvet, Michael R Lucey, Philippe Mathurin, Guadalupe Garcia-Tsao, Ramon Bataller, Bernd Schnabl, | Hepatology (Baltimore, Md.) | 2024-02-20 |
| The role of the microbiome in liver disease. | David Schöler, Bernd Schnabl | Current Opinion In Gastroenterology | 2024-02-19 |
| Live bacterial therapeutics for detection and treatment of colorectal cancer. | Joanna Zhang, Jeff Hasty, Amir Zarrinpar | Nature Reviews. Gastroenterology & Hepatology | 2024-02-14 |
| MAR4 : A Unique Resource for Natural Product Discovery. | Douglas Sweeney, Alexander B Chase, Alexander Bogdanov, Paul R Jensen | Journal Of Natural Products | 2024-02-14 |
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| Reconstructing the transcriptional regulatory network of probiotic is enabled by transcriptomics and machine learning. | Jonathan Josephs-Spaulding, Akanksha Rajput, Ying Hefner, Richard Szubin, Archana Balasubramanian, Gaoyuan Li, Daniel C Zielinski, Leonie Jahn, Morten Sommer, Patrick Phaneuf, Bernhard O Palsson | MSystems | 2024-02-13 |
| Coral thermal stress and bleaching enrich and restructure reef microbial communities via altered organic matter exudation. | Wesley J Sparagon, Milou G I Arts, Zachary A Quinlan, Linda Wegley Kelly, Irina Koester, Jacqueline Comstock, Jessica A Bullington, Craig A Carlson, Pieter C Dorrestein, Lihini I Aluwihare, Andreas F Haas, Craig E Nelson | Communications Biology | 2024-02-13 |
| A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables. | Zachary M Burcham, Aeriel D Belk, Bridget B McGivern, Amina Bouslimani, Parsa Ghadermazi, Cameron Martino, Liat Shenhav, Anru R Zhang, Pixu Shi, Alexandra Emmons, Heather L Deel, Zhenjiang Zech Xu, Victoria Nieciecki, Qiyun Zhu, Michael Shaffer, Morgan Panitchpakdi, Kelly C Weldon, Kalen Cantrell, Asa Ben-Hur, Sasha C Reed, Greg C Humphry, Gail Ackermann, Daniel McDonald, Siu Hung Joshua Chan, Melissa Connor, Derek Boyd, Jake Smith, Jenna M S Watson, Giovanna Vidoli, Dawnie Steadman, Aaron M Lynne, Sibyl Bucheli, Pieter C Dorrestein, Kelly C Wrighton, David O Carter, Rob Knight, Jessica L Metcalf | Nature Microbiology | 2024-02-12 |
| StressME: Unified computing framework of Escherichia coli metabolism, gene expression, and stress responses. | Jiao Zhao, Ke Chen, Bernhard O Palsson, Laurence Yang | PLoS Computational Biology | 2024-02-12 |
| Birthmode and environment-dependent microbiota transmission dynamics are complemented by breastfeeding during the first year. | Marta Selma-Royo, Léonard Dubois, Serena Manara, Federica Armanini, Raúl Cabrera-Rubio, Mireia Valles-Colomer, Sonia González, Anna Parra-Llorca, Ramon Escuriet, Lars Bode, Cecilia Martínez-Costa, Nicola Segata, Maria Carmen Collado | Cell Host & Microbe | 2024-02-09 |
| Predictors of HIV rebound differ by timing of antiretroviral therapy initiation. | Jonathan Z Li, Meghan Melberg, Autumn Kittilson, Mohamed Abdel-Mohsen, Yijia Li, Evgenia Aga, Ronald J Bosch, Elizabeth R Wonderlich, Jennifer Kinslow, Leila B Giron, Clara Di Germanio, Mark Pilkinton, Lynsay MacLaren, Michael Keefer, Lawrence Fox, Liz Barr, Edward Acosta, Jintanat Ananworanich, Robert Coombs, John Mellors, Steven Deeks, Rajesh T Gandhi, Michael Busch, Alan Landay, Bernard Macatangay, Davey M Smith, | JCI Insight | 2024-02-08 |
| Structure and Biosynthesis of Hectoramide B, a Linear Depsipeptide from Marine Cyanobacterium JHB Discovered via Coculture with . | Thuan-Ethan Ngo, Andrew Ecker, Byeol Ryu, Aurora Guild, Ariana Remmel, Paul D Boudreau, Kelsey L Alexander, C Benjamin Naman, Evgenia Glukhov, Nicole E Avalon, Vikram V Shende, Lamar Thomas, Samira Dahesh, Victor Nizet, Lena Gerwick, William H Gerwick | ACS Chemical Biology | 2024-02-08 |
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| A concept for international societally relevant microbiology education and microbiology knowledge promulgation in society. | Kenneth Timmis, John E Hallsworth, Terry J McGenity, Rachel Armstrong, María Francisca Colom, Zeynep Ceren Karahan, Max Chavarría, Patricia Bernal, Eric S Boyd, Juan Luis Ramos, Martin Kaltenpoth, Carla Pruzzo, Gerard Clarke, Purificación López-Garcia, Michail M Yakimov, Jessamyn Perlmutter, Chris Greening, Emiley Eloe-Fadrosh, Willy Verstraete, Olga C Nunes, Oleg Kotsyurbenko, Pablo Iván Nikel, Paola Scavone, Max M Häggblom, Rob Lavigne, Frédérique Le Roux, James K Timmis, Victor Parro, Carmen Michán, José Luis García, Arturo Casadevall, Shelley M Payne, Joachim Frey, Omry Koren, James I Prosser, Leo Lahti, Rup Lal, Shailly Anand, Utkarsh Sood, Pierre Offre, Casey C Bryce, Allen Y Mswaka, Jörg Jores, Betül Kaçar, Lars Mathias Blank, Nicole Maaßen, Phillip B Pope, Horia L Banciu, Judith Armitage, Sang Yup Lee, Fengping Wang, Thulani P Makhalanyane, Jack A Gilbert, Thomas K Wood, Branka Vasiljevic, Mario Soberón, Zulema Udaondo, Fernando Rojo, Jyoti Prakash Tamang, Tatiana Giraud, Jeanne Ropars, Thaddeus Ezeji, Volker Müller, Hirofume Danbara, Beate Averhoff, Angela Sessitsch, Laila Pamela Partida-Martínez, Wei Huang, Søren Molin, Pilar Junier, Ricardo Amils, Xiao-Lei Wu, Eliora Ron, Huseyin Erten, Elaine Cristina Pereira de Martinis, Alexander Rapoport, Maarja Öpik, W Donald R Pokatong, Courtney Stairs, Mohammad Ali Amoozegar, Jéssica Gil Serna | Microbial Biotechnology | 2024-02-08 |
| Bile salt hydrolase catalyses formation of amine-conjugated bile acids. | Bipin Rimal, Stephanie L Collins, Ceylan E Tanes, Edson R Rocha, Megan A Granda, Sumeet Solanki, Nushrat J Hoque, Emily C Gentry, Imhoi Koo, Erin R Reilly, Fuhua Hao, Devendra Paudel, Vishal Singh, Tingting Yan, Min Soo Kim, Kyle Bittinger, Joseph P Zackular, Kristopher W Krausz, Dhimant Desai, Shantu Amin, James P Coleman, Yatrik M Shah, Jordan E Bisanz, Frank J Gonzalez, John P Vanden Heuvel, Gary D Wu, Babette S Zemel, Pieter C Dorrestein, Emily E Weinert, Andrew D Patterson | Nature | 2024-02-07 |
| Machine learning analysis of RB-TnSeq fitness data predicts functional gene modules in KT2440. | Andrew J Borchert, Alissa C Bleem, Hyun Gyu Lim, Kevin Rychel, Keven D Dooley, Zoe A Kellermyer, Tracy L Hodges, Bernhard O Palsson, Gregg T Beckham | MSystems | 2024-02-07 |
| Co-occurrence network analysis reveals the alterations of the skin microbiome and metabolome in adults with mild to moderate atopic dermatitis. | Paulo Wender P Gomes, Helena Mannochio-Russo, Junhong Mao, Haoqi Nina Zhao, Jacob Ancira, Craig D Tipton, Pieter C Dorrestein, Min Li | MSystems | 2024-02-06 |
| microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data. | Simone Zuffa, Robin Schmid, Anelize Bauermeister, Paulo Wender P Gomes, Andres M Caraballo-Rodriguez, Yasin El Abiead, Allegra T Aron, Emily C Gentry, Jasmine Zemlin, Michael J Meehan, Nicole E Avalon, Robert H Cichewicz, Ekaterina Buzun, Marvic Carrillo Terrazas, Chia-Yun Hsu, Renee Oles, Adriana Vasquez Ayala, Jiaqi Zhao, Hiutung Chu, Mirte C M Kuijpers, Sara L Jackrel, Fidele Tugizimana, Lerato Pertunia Nephali, Ian A Dubery, Ntakadzeni Edwin Madala, Eduarda Antunes Moreira, Leticia Veras Costa-Lotufo, Norberto Peporine Lopes, Paula Rezende-Teixeira, Paula C Jimenez, Bipin Rimal, Andrew D Patterson, Matthew F Traxler, Rita de Cassia Pessotti, Daniel Alvarado-Villalobos, Giselle Tamayo-Castillo, Priscila Chaverri, Efrain Escudero-Leyva, Luis-Manuel Quiros-Guerrero, Alexandre Jean Bory, Juliette Joubert, Adriano Rutz, Jean-Luc Wolfender, Pierre-Marie Allard, Andreas Sichert, Sammy Pontrelli, Benjamin S Pullman, Nuno Bandeira, William H Gerwick, Katia Gindro, Josep Massana-Codina, Berenike C Wagner, Karl Forchhammer, Daniel Petras, Nicole Aiosa, Neha Garg, Manuel Liebeke, Patric Bourceau, Kyo Bin Kang, Henna Gadhavi, Luiz Pedro Sorio de Carvalho, Mariana Silva Dos Santos, Alicia Isabel Pérez-Lorente, Carlos Molina-Santiago, Diego Romero, Raimo Franke, Mark Brönstrup, Arturo Vera Ponce de León, Phillip Byron Pope, Sabina Leanti La Rosa, Giorgia La Barbera, Henrik M Roager, Martin Frederik Laursen, Fabian Hammerle, Bianka Siewert, Ursula Peintner, Cuauhtemoc Licona-Cassani, Lorena Rodriguez-Orduña, Evelyn Rampler, Felina Hildebrand, Gunda Koellensperger, Harald Schoeny, Katharina Hohenwallner, Lisa Panzenboeck, Rachel Gregor, Ellis Charles O'Neill, Eve Tallulah Roxborough, Jane Odoi, Nicole J Bale, Su Ding, Jaap S Sinninghe Damsté, Xue Li Guan, Jerry J Cui, Kou-San Ju, Denise Brentan Silva, Fernanda Motta Ribeiro Silva, Gilvan Ferreira da Silva, Hector H F Koolen, Carlismari Grundmann, Jason A Clement, Hosein Mohimani, Kirk Broders, Kerry L McPhail, Sidnee E Ober-Singleton, Christopher M Rath, Daniel McDonald, Rob Knight, Mingxun Wang, Pieter C Dorrestein | Nature Microbiology | 2024-02-05 |
| Diagnostic Ability of Simple Noninvasive Blood Tests to Predict Increased Liver Stiffness in People Living with HIV and Steatotic Liver Disease. | Richard K Sterling, Eduardo Vilar-Gomez, Laura A Wilson ScM, Rohit Loomba, Samer Gawrieh, Jennifer Price, Susanna Naggie, Jordan E Lake, Sonya Heath, James Tonascia, Mark Sulkowski, Naga Chalasani, | The American Journal Of Gastroenterology | 2024-02-05 |
| Tamm-Horsfall protein augments neutrophil NETosis during urinary tract infection. | Vicki Mercado-Evans, Claude Chew, Camille Serchejian, Alexander Saltzman, Marlyd E Mejia, Jacob J Zulk, Ingrid Cornax, Victor Nizet, Kathryn A Patras | BioRxiv : The Preprint Server For Biology | 2024-02-05 |
| Viral afterlife: SARS-CoV-2 as a reservoir of immunomimetic peptides that reassemble into proinflammatory supramolecular complexes. | Yue Zhang, Vanthana Bharathi, Tatsuya Dokoshi, Jaime de Anda, Lauryn Tumey Ursery, Nikhil N Kulkarni, Yoshiyuki Nakamura, Jonathan Chen, Elizabeth W C Luo, Lamei Wang, Hua Xu, Alison Coady, Raymond Zurich, Michelle W Lee, Tsutomu Matsui, HongKyu Lee, Liana C Chan, Athena A Schepmoes, Mary S Lipton, Rui Zhao, Joshua N Adkins, Geremy C Clair, Lance R Thurlow, Jonathan C Schisler, Matthew C Wolfgang, Robert S Hagan, Michael R Yeaman, Thomas M Weiss, Xinhua Chen, Melody M H Li, Victor Nizet, Silvio Antoniak, Nigel Mackman, Richard L Gallo, Gerard C L Wong | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2024-02-02 |
| Fungal signature differentiates alcohol-associated liver disease from nonalcoholic fatty liver disease. | Greta Viebahn, Phillipp Hartmann, Sonja Lang, Münevver Demir, Xinlian Zhang, Derrick E Fouts, Peter Stärkel, Bernd Schnabl | Gut Microbes | 2024-02-01 |
| Evaluation of the safety and efficacy of fecal microbiota transplantations in bottlenose dolphins (Tursiops truncatus) using metagenomic sequencing. | Barbara K Linnehan, Sho M Kodera, Sarah M Allard, Erin C Brodie, Celeste Allaband, Rob Knight, Holly L Lutz, Maureen C Carroll, Jennifer M Meegan, Eric D Jensen, Jack A Gilbert | Journal Of Applied Microbiology | 2024-02-01 |
| Analytical Challenges in Omics Research on Asthma and Allergy: A National Institute of Allergy and Infectious Diseases Workshop. | Supinda Bunyavanich, Patrice M Becker, Matthew C Altman, Jessica Lasky-Su, Carole Ober, Karsten Zengler, Evgeny Berdyshev, Richard Bonneau, Talal Chatila, Nilanjan Chatterjee, Kian Fan Chung, Colleen Cutcliffe, Wendy Davidson, Gang Dong, Gang Fang, Patricia Fulkerson, Blanca E Himes, Liming Liang, Rasika A Mathias, Shuji Ogino, Joseph Petrosino, Nathan D Price, Eric Schadt, James Schofield, Max A Seibold, Hanno Steen, Lisa Wheatley, Hongmei Zhang, Alkis Togias, Kohei Hasegawa | The Journal Of Allergy And Clinical Immunology | 2024-01-29 |
| Competition-driven eco-evolutionary feedback reshapes bacteriophage lambda's fitness landscape and enables speciation. | Michael B Doud, Animesh Gupta, Victor Li, Sarah J Medina, Caesar A De La Fuente, Justin R Meyer | Nature Communications | 2024-01-29 |
| Inferred regulons are consistent with regulator binding sequences in E. coli. | Sizhe Qiu, Xinlong Wan, Yueshan Liang, Cameron R Lamoureux, Amir Akbari, Bernhard O Palsson, Daniel C Zielinski | PLoS Computational Biology | 2024-01-22 |
| Variant of the lactase LCT gene explains association between milk intake and incident type 2 diabetes. | Kai Luo, Guo-Chong Chen, Yanbo Zhang, Jee-Young Moon, Jiaqian Xing, Brandilyn A Peters, Mykhaylo Usyk, Zheng Wang, Gang Hu, Jun Li, Elizabeth Selvin, Casey M Rebholz, Tao Wang, Carmen R Isasi, Bing Yu, Rob Knight, Eric Boerwinkle, Robert D Burk, Robert C Kaplan, Qibin Qi | Nature Metabolism | 2024-01-22 |
| Examining the taxonomic distribution of tetracycline resistance in a wastewater plant. | Howard Ochman, Erik M Quandt, Neil Gottell, Jack A Gilbert | Sustainable Microbiology | 2024-01-19 |
| Cognitive criteria in HIV: greater consensus is needed. | Lucette A Cysique, Bruce J Brew, Jane Bruning, Desiree Byrd, Jane Costello, Kirstie Daken, Ronald J Ellis, Pariya L Fazeli, Karl Goodkin, Hetta Gouse, Robert K Heaton, Scott Letendre, Jules Levin, Htein Linn Aung, Monica Rivera Mindt, David Moore, Amy B Mullens, Sérgio Monteiro de Almeida, Jose A Muñoz-Moreno, Chrispher Power, Reuben N Robbins, John Rule, Reena Rajasuriar, Micah J Savin, Jeff Taylor, Mattia Trunfio, David E Vance, Pui Li Wong, Steven P Woods, Edwina J Wright, Sean B Rourke | Nature Reviews. Neurology | 2024-01-16 |
| Integrated Genomic and Social Network Analyses of Severe Acute Respiratory Syndrome Coronavirus 2 Transmission in the Healthcare Setting. | Jocelyn Keehner, Shira R Abeles, Christopher A Longhurst, Lucy E Horton, Frank E Myers, Lindsay Riggs-Rodriguez, Mohammed Ahmad, Sally Baxter, Aaron Boussina, Kalen Cantrell, Priscilla Cardenas, Peter De Hoff, Robert El-Kareh, Jennifer Holland, Daryn Ikeda, Kirk Kurashige, Louise C Laurent, , Andrew Lucas, David Pride, Shashank Sathe, Allen R Tran, Tetyana I Vasylyeva, Gene Yeo, Rob Knight, Joel O Wertheim, Francesca J Torriani | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2024-01-16 |
| Comparative molecular profiling of multidrug-resistant identifies novel mutations in regional clinical isolates from South India. | Nitasha D Menon, Priyanka Somanath, Jennifer Jossart, Gayathri Vijayakumar, Kavya Shetty, Manasi Baswe, Meghna Chatterjee, Malavika B Hari, Samitha Nair, V Anil Kumar, Bipin G Nair, Victor Nizet, J Jefferson P Perry, Geetha B Kumar | JAC-antimicrobial Resistance | 2024-01-16 |
| Outcomes of SARS-CoV-2 and Seasonal Viruses Among Children Hospitalized in Brazil. | Cristiane S Dias, Lilian M Diniz, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Clara C Pinhati, Stella C Galante, Isadora Y Veloso, Hercílio Martelli-Júnior, Eduardo A Oliveira | Pediatrics | 2024-01-12 |
| A multi-study analysis enables identification of potential microbial features associated with skin aging signs. | Tyler Myers, Amina Bouslimani, Shi Huang, Shalisa T Hansen, Cécile Clavaud, Anissa Azouaoui, Alban Ott, Audrey Gueniche, Charbel Bouez, Qian Zheng, Luc Aguilar, Rob Knight, Magali Moreau, Se Jin Song | Frontiers In Aging | 2024-01-11 |
| A vascularized 3D model of the human pancreatic islet forstudy of immune cell-islet interaction. | R Hugh F Bender, Benjamen T O'Donnell, Bhupinder Shergill, Brittany Q Pham, Sima Tahmouresie, Celeste N Sanchez, Damie J Juat, Michaela M S Hatch, Venktesh S Shirure, Matthew Wortham, Kim-Vy Nguyen-Ngoc, Yesl Jun, Roberto Gaetani, Karen L Christman, Luc Teyton, Steven C George, Maike Sander, Christopher C W Hughes | Biofabrication | 2024-01-11 |
| Functional metabolomics of the human scalp: a metabolic niche for . | Louis-Félix Nothias, Robin Schmid, Allison Garlet, Hunter Cameron, Sabrina Leoty-Okombi, Valérie André-Frei, Regine Fuchs, Pieter C Dorrestein, Philipp Ternes | MSystems | 2024-01-11 |
| Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. | Reta D Sarsam, Jun Xu, Indrajit Lahiri, Wenzhi Gong, Qingrong Li, Juntaek Oh, Zhen Zhou, Peini Hou, Jenny Chong, Nan Hao, Shisheng Li, Dong Wang, Andres E Leschziner | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2024-01-09 |
| A bacterial sialidase mediates early-life colonization by a pioneering gut commensal. | Ekaterina Buzun, Chia-Yun Hsu, Kristija Sejane, Renee E Oles, Adriana Vasquez Ayala, Luke R Loomis, Jiaqi Zhao, Leigh-Ana Rossitto, Dominic M McGrosso, David J Gonzalez, Lars Bode, Hiutung Chu | Cell Host & Microbe | 2024-01-09 |
| Independent component analysis reveals 49 independently modulated gene sets within the global transcriptional regulatory architecture of multidrug-resistant . | Nitasha D Menon, Saugat Poudel, Anand V Sastry, Kevin Rychel, Richard Szubin, Nicholas Dillon, Hannah Tsunemoto, Yujiro Hirose, Bipin G Nair, Geetha B Kumar, Bernhard O Palsson, Victor Nizet | MSystems | 2024-01-08 |
| The inner workings of an ancient biological clock. | Mingxu Fang, Andy LiWang, Susan S Golden, Carrie L Partch | Trends In Biochemical Sciences | 2024-01-06 |
| Effects of Opioid Withdrawal on Psychobiology in People Living with HIV. | Igor Grant, Evgeny Krupitsky, Marina Vetrova, Anya Umlauf, Robert K Heaton, Richard L Hauger, Olga Toussova, Donald R Franklin, Scott L Letendre, George Woody, Elena Blokhina, Dmitry Lioznov, Edwin Zvartau | Viruses | 2024-01-06 |
| Adaptation of the brainwriting premortem technique to inform the co-creation of COVID-19 testing strategies in underserved communities in South San Diego. | Borsika A Rabin, Kelli L Cain, Lawrence O Ayers, Angel Lomeli, Arleth Escoto, Maria Linda Burola, Melanie Aguilar, Stephenie Tinoco Calvillo, Breanna Reyes, Linda Salgin, Robert Tukey, Louise C Laurent, Nicole A Stadnick | BMC Health Services Research | 2024-01-03 |
| The shikimate pathway: gateway to metabolic diversity. | Vikram V Shende, Katherine D Bauman, Bradley S Moore | Natural Product Reports | 2024-01-03 |
| Decentralized ORP Measurements for Gut Redox Status Monitoring: Toward Personalized Gut Microbiota Balance. | Víctor Ruiz-Valdepeñas Montiel, Eva Vargas, Amira Ben Hassine, Ignasi Simon, Andres Duvvuri, An-Yi Chang, Ponnusamy Nandhakumar, Andrea Bulbarello, André Düsterloh, Tim Mak, Joseph Wang | Analytical Chemistry | 2023-12-27 |
| Decoding human cytomegalovirus for the development of innovative diagnostics to detect congenital infection. | Shelley M Lawrence, Tyler Goshia, Mridu Sinha, Stephanie I Fraley, Marvin Williams | Pediatric Research | 2023-12-25 |
| Pan-cancer analysis of TIM-3 transcriptomic expression reveals high levels in pancreatic cancer and interpatient heterogeneity. | Jungah Lim, Razelle Kurzrock, Daisuke Nishizaki, Hirotaka Miyashita, Jacob J Adashek, Suzanna Lee, Sarabjot Pabla, Mary Nesline, Jeffrey M Conroy, Paul DePietro, Scott M Lippman, Shumei Kato | Cancer Medicine | 2023-12-22 |
| SARS-CoV-2 variants are associated with different clinical courses in children with MIS-C. | Andres F Moreno Rojas, Emelia Bainto, Helen Harvey, Adriana H Tremoulet, Jane C Burns, Kirsten B Dummer | World Journal Of Pediatrics : WJP | 2023-12-22 |
| Pangenome comparison of genomospecies unveil genetic diversity and ecological insights. | Renee E Oles, Marvic Carrillo Terrazas, Luke R Loomis, Chia-Yun Hsu, Caitlin Tribelhorn, Pedro Belda Ferre, Allison Ea, MacKenzie Bryant, Jocelyn Young, Hannah C Carrow, William J Sandborn, Parambir Dulai, Mamata Sivagnanam, David Pride, Rob Knight, Hiutung Chu | BioRxiv : The Preprint Server For Biology | 2023-12-21 |
| Exploring Roles of the Polysaccharide Capsule in Pathogenesis of Hypervirulent Clinical Isolate Lac-4. | Elisabet Bjånes, Truman Koh, Tariq Qayum, Raymond Zurich, Sinead McCabe, Kegan Hampel, Lisa Cartwright, Victor Nizet | Antibiotics (Basel, Switzerland) | 2023-12-20 |
| Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics. | Wout Bittremieux, Nicole E Avalon, Sydney P Thomas, Sarvar A Kakhkhorov, Alexander A Aksenov, Paulo Wender P Gomes, Christine M Aceves, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, William H Gerwick, Tao Huan, Alan K Jarmusch, Rima F Kaddurah-Daouk, Kyo Bin Kang, Hyun Woo Kim, Todor Kondić, Helena Mannochio-Russo, Michael J Meehan, Alexey V Melnik, Louis-Felix Nothias, Claire O'Donovan, Morgan Panitchpakdi, Daniel Petras, Robin Schmid, Emma L Schymanski, Justin J J van der Hooft, Kelly C Weldon, Heejung Yang, Shipei Xing, Jasmine Zemlin, Mingxun Wang, Pieter C Dorrestein | Nature Communications | 2023-12-20 |
| Response to Daungsupawong and Wiwanitkitre: "Validating Tools to Detect and Inactivate Monkeypox Virus in Human Milk". | Lars Bode | Breastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine | 2023-12-18 |
| Microbial Players in Primary Sclerosing Cholangitis - current evidence and concepts. | Burcin Özdirik, Bernd Schnabl | Cellular And Molecular Gastroenterology And Hepatology | 2023-12-16 |
| Effects of variation in sample storage conditions and swab order on 16S vaginal microbiome analyses. | Tanya Kumar, MacKenzie Bryant, Kalen Cantrell, Se Jin Song, Daniel McDonald, Helena M Tubb, Sawyer Farmer, Amanda Lewis, Emily S Lukacz, Linda Brubaker, Rob Knight | Microbiology Spectrum | 2023-12-14 |
| Commensal bacteria promote type I interferon signaling to maintain immune tolerance in mice. | Adriana Vasquez Ayala, Chia-Yun Hsu, Renee E Oles, Kazuhiko Matsuo, Luke R Loomis, Ekaterina Buzun, Marvic Carrillo Terrazas, Romana R Gerner, Hsueh-Han Lu, Sohee Kim, Ziyue Zhang, Jong Hwee Park, Paul Rivaud, Matt Thomson, Li-Fan Lu, Booki Min, Hiutung Chu | The Journal Of Experimental Medicine | 2023-12-12 |
| Elevated Plasma Protein Carbonyl Concentration Is Associated with More Abnormal White Matter in People with HIV. | Patricia K Riggs, Albert M Anderson, Bin Tang, Leah H Rubin, Susan Morgello, Christina M Marra, Benjamin B Gelman, David B Clifford, Donald Franklin, Robert K Heaton, Ronald J Ellis, Christine Fennema-Notestine, Scott L Letendre | Viruses | 2023-12-12 |
| The brain, gut, and bladder health nexus: A conceptual model linking stress and mental health disorders to overactive bladder in women. | Ariana L Smith, Amanda Berry, Linda Brubaker, Shayna D Cunningham, Sheila Gahagan, Lisa Kane Low, Margaret Mueller, Siobhan Sutcliffe, Beverly R Williams, Sonya S Brady, | Neurourology And Urodynamics | 2023-12-11 |
| A Standardized Set of MoClo-Compatible Inducible Promoter Systems for Tunable Gene Expression in Yeast. | Richard O'Laughlin, Quoc Tran, Andrew Lezia, Wasu Ngamkanjanarat, Philip Emmanuele, Nan Hao, Jeff Hasty | ACS Synthetic Biology | 2023-12-11 |
| Genomic and Phenotypic Insight into the Probiotic Potential of Lactic Acid Bacterial spp. Associated with the Human Gut Mucosa. | Kanwal Aziz, Jack A Gilbert, Arsalan Haseeb Zaidi | Probiotics And Antimicrobial Proteins | 2023-12-09 |
| Reverse metabolomics for the discovery of chemical structures from humans. | Emily C Gentry, Stephanie L Collins, Morgan Panitchpakdi, Pedro Belda-Ferre, Allison K Stewart, Marvic Carrillo Terrazas, Hsueh-Han Lu, Simone Zuffa, Tingting Yan, Julian Avila-Pacheco, Damian R Plichta, Allegra T Aron, Mingxun Wang, Alan K Jarmusch, Fuhua Hao, Mashette Syrkin-Nikolau, Hera Vlamakis, Ashwin N Ananthakrishnan, Brigid Boland, Amy Hemperly, Niels Vande Casteele, Frank J Gonzalez, Clary B Clish, Ramnik J Xavier, Hiutung Chu, Erin S Baker, Andrew D Patterson, Rob Knight, Dionicio Siegel, Pieter C Dorrestein | Nature | 2023-12-05 |
| Commensal Oral Microbiota, Disease Severity and Mortality in Fibrotic Lung Disease. | David N O'Dwyer, John S Kim, Shwu-Fan Ma, Piyush Ranjan, Promi Das, Jay H Lipinski, Joseph D Metcalf, Nicole R Falkowski, Eric Yow, Kevin Anstrom, Robert P Dickson, Yong Huang, Jack A Gilbert, Fernando J Martinez, Imre Noth | American Journal Of Respiratory And Critical Care Medicine | 2023-12-05 |
| Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics. | Nathaniel L Matteson, Gabriel W Hassler, Ezra Kurzban, Madison A Schwab, Sarah A Perkins, Karthik Gangavarapu, Joshua I Levy, Edyth Parker, David Pride, Abbas Hakim, Peter De Hoff, Willi Cheung, Anelizze Castro-Martinez, Andrea Rivera, Anthony Veder, Ariana Rivera, Cassandra Wauer, Jacqueline Holmes, Jedediah Wilson, Shayla N Ngo, Ashley Plascencia, Elijah S Lawrence, Elizabeth W Smoot, Emily R Eisner, Rebecca Tsai, Marisol Chacón, Nathan A Baer, Phoebe Seaver, Rodolfo A Salido, Stefan Aigner, Toan T Ngo, Tom Barber, Tyler Ostrander, Rebecca Fielding-Miller, Elizabeth H Simmons, Oscar E Zazueta, Idanya Serafin-Higuera, Manuel Sanchez-Alavez, Jose L Moreno-Camacho, Abraham García-Gil, Ashleigh R Murphy Schafer, Eric McDonald, Jeremy Corrigan, John D Malone, Sarah Stous, Seema Shah, Niema Moshiri, Alana Weiss, Catelyn Anderson, Christine M Aceves, Emily G Spencer, Emory C Hufbauer, Justin J Lee, Alison J King, Karthik S Ramesh, Kelly N Nguyen, Kieran Saucedo, Refugio Robles-Sikisaka, Kathleen M Fisch, Steven L Gonias, Amanda Birmingham, Daniel McDonald, Smruthi Karthikeyan, Natasha K Martin, Robert T Schooley, Agustin J Negrete, Horacio J Reyna, Jose R Chavez, Maria L Garcia, Jose M Cornejo-Bravo, David Becker, Magnus Isaksson, Nicole L Washington, William Lee, Richard S Garfein, Marco A Luna-Ruiz Esparza, Jonathan Alcántar-Fernández, Benjamin Henson, Kristen Jepsen, Beatriz Olivares-Flores, Gisela Barrera-Badillo, Irma Lopez-Martínez, José E Ramírez-González, Rita Flores-León, Stephen F Kingsmore, Alison Sanders, Allorah Pradenas, Benjamin White, Gary Matthews, Matt Hale, Ronald W McLawhon, Sharon L Reed, Terri Winbush, Ian H McHardy, Russel A Fielding, Laura Nicholson, Michael M Quigley, Aaron Harding, Art Mendoza, Omid Bakhtar, Sara H Browne, Jocelyn Olivas Flores, Diana G Rincon Rodríguez, Martin Gonzalez Ibarra, Luis C Robles Ibarra, Betsy J Arellano Vera, Jonathan Gonzalez Garcia, Alicia Harvey-Vera, Rob Knight, Louise C Laurent, Gene W Yeo, Joel O Wertheim, Xiang Ji, Michael Worobey, Marc A Suchard, Kristian G Andersen, Abraham Campos-Romero, Shirlee Wohl, Mark Zeller | Cell | 2023-12-05 |
| Microbiology of the built environment: harnessing human-associated built environment research to inform the study and design of animal nests and enclosures. | Megan S Hill, Jack A Gilbert | Microbiology And Molecular Biology Reviews : MMBR | 2023-12-04 |
| The Group A Streptococcal Vaccine Candidate VAX-A1 Protects against Group B Infection via Cross-Reactive IgG Targeting Virulence Factor C5a Peptidase. | Sinead McCabe, Elisabet Bjånes, Astrid Hendriks, Zhen Wang, Nina M van Sorge, Lucy Pill-Pepe, Leslie Bautista, Ellen Chu, Jeroen D C Codée, Jeff Fairman, Neeraj Kapoor, Satoshi Uchiyama, Victor Nizet | Vaccines | 2023-12-03 |
| The effects of host ecology and phylogeny on gut microbiota (non)parallelism across birds and mammals. | Andreas Härer, Diana J Rennison | MSphere | 2023-12-01 |
| Oral magnesium prevents acetaminophen-induced acute liver injury by modulating microbial metabolism. | Dongping Li, Yu Chen, Meijuan Wan, Fengyi Mei, Fangzhao Wang, Peng Gu, Xianglong Zhang, Rongjuan Wei, Yunong Zeng, Hanzhao Zheng, Bangguo Chen, Qingquan Xiong, Tao Xue, Tianshan Guan, Jiayin Guo, Yuanxin Tian, Li-Yan Zeng, Zhanguo Liu, Hang Yuan, Ling Yang, Hongbin Liu, Lei Dai, Yao Yu, Yifeng Qiu, Peng Wu, Sanda Win, Tin Aung Than, Riqing Wei, Bernd Schnabl, Neil Kaplowitz, Yong Jiang, Qiang Ma, Peng Chen | Cell Host & Microbe | 2023-12-01 |
| Unveiling a CAAX Protease-Like Protein Involved in Didemnin Drug Maturation and Secretion. | Xiaolin Zou, Zhen Hui, Robert A Shepherd, Shuaiqiang Zhao, Yanfei Wu, Zhuanglin Shen, Cuiping Pang, Shipeng Zhou, Zehai Yu, Jiahai Zhou, Bradley S Moore, Laura M Sanchez, Xiaoyu Tang | Advanced Science (Weinheim, Baden-Wurttemberg, Germany) | 2023-11-30 |
| Rising global burden of cancer attributable to high BMI from 2010 to 2019. | Darren Jun Hao Tan, Cheng Han Ng, Mark Muthiah, Jie Ning Yong, Douglas Chee, Margaret Teng, Zhen Yu Wong, Rebecca Wenling Zeng, Yip Han Chin, Jiong-Wei Wang, Pojsakorn Danpanichkul, Ruveena Bhavani Rajaram, Ramanuj DasGupta, Hiroyuki Suzuki, Hirokazu Takahashi, Nobuharu Tamaki, Yock Young Dan, Rashid Lui, Ajay Duseja, Mohammad Shadab Siddiqui, Khay Guan Yeoh, Arun Sanyal, Karn Wijarnpreecha, Rohit Loomba, Christos Socrates Mantzoros, Daniel Q Huang | Metabolism: Clinical And Experimental | 2023-11-27 |
| Optimizing campus-wide COVID-19 test notifications with interpretable wastewater time-series features using machine learning models. | Tuo Lin, Smruthi Karthikeyan, Alysson Satterlund, Robert Schooley, Rob Knight, Victor De Gruttola, Natasha Martin, Jingjing Zou | Scientific Reports | 2023-11-24 |
| Global pathogenomic analysis identifies known and candidate genetic antimicrobial resistance determinants in twelve species. | Jason C Hyun, Jonathan M Monk, Richard Szubin, Ying Hefner, Bernhard O Palsson | Nature Communications | 2023-11-24 |
| High-resolution temporal profiling of E. coli transcriptional response. | Arianna Miano, Kevin Rychel, Andrew Lezia, Anand Sastry, Bernhard Palsson, Jeff Hasty | Nature Communications | 2023-11-22 |
| Time to rethink academic publishing: the peer reviewer crisis. | Carolina Tropini, B Brett Finlay, Mark Nichter, Melissa K Melby, Jessica L Metcalf, Maria Gloria Dominguez-Bello, Liping Zhao, Margaret J McFall-Ngai, Naama Geva-Zatorsky, Katherine R Amato, Eduardo A Undurraga, Hendrik N Poinar, Jack A Gilbert | MBio | 2023-11-17 |
| Role of Gut Microbiota in Statin-Associated New-Onset Diabetes-a Cross-Sectional and Prospective Analysis of the FINRISK 2002 Cohort. | Kari Koponen, Oleg Kambur, Bijoy Joseph, Matti O Ruuskanen, Pekka Jousilahti, Rodolfo Salido, Caitriona Brennan, Mohit Jain, Guillaume Meric, Michael Inouye, Leo Lahti, Teemu Niiranen, Aki S Havulinna, Rob Knight, Veikko Salomaa | Arteriosclerosis, Thrombosis, And Vascular Biology | 2023-11-16 |
| Functional annotation of enzyme-encoding genes using deep learning with transformer layers. | Gi Bae Kim, Ji Yeon Kim, Jong An Lee, Charles J Norsigian, Bernhard O Palsson, Sang Yup Lee | Nature Communications | 2023-11-14 |
| Topical delivery of seriniquinone for treatment of skin cancer and fungal infections is enabled by a liquid crystalline lamellar phase. | Rodrigo Dos A Miguel, Amanda S Hirata, Giovanna C Salata, Alexsandra C Apolinário, Vinicius M Barroso, Kelly Ishida, James J La Clair, William Fenical, Tereza S Martins, Leticia V Costa-Lotufo, Luciana B Lopes | European Journal Of Pharmaceutical Sciences : Official Journal Of The European Federation For Pharmaceutical Sciences | 2023-11-10 |
| Transcriptomes and metabolism define mouse and human MAIT cell populations. | Shilpi Chandra, Gabriel Ascui, Thomas Riffelmacher, Ashu Chawla, Ciro Ramírez-Suástegui, Viankail C Castelan, Gregory Seumois, Hayley Simon, Mallory P Murray, Goo-Young Seo, Ashmitaa L R Premlal, Benjamin Schmiedel, Greet Verstichel, Yingcong Li, Chia-Hao Lin, Jason Greenbaum, John Lamberti, Raghav Murthy, John Nigro, Hilde Cheroutre, Christian H Ottensmeier, Stephen M Hedrick, Li-Fan Lu, Pandurangan Vijayanand, Mitchell Kronenberg | Science Immunology | 2023-11-10 |
| Rapid bacteria-phage coevolution drives the emergence of multiscale networks. | Joshua M Borin, Justin J Lee, Adriana Lucia-Sanz, Krista R Gerbino, Joshua S Weitz, Justin R Meyer | Science (New York, N.Y.) | 2023-11-09 |
| Universal Digital High Resolution Melt for the detection of pulmonary mold infections. | Tyler Goshia, April Aralar, Nathan Wiederhold, Jeffrey D Jenks, Sanjay R Mehta, Mridu Sinha, Aprajita Karmakar, Ankit Sharma, Rachit Shrivastava, Haoxiang Sun, P Lewis White, Martin Hoenigl, Stephanie I Fraley | BioRxiv : The Preprint Server For Biology | 2023-11-09 |
| A New Paradigm for High-dimensional Data: Distance-Based Semiparametric Feature Aggregation Framework via Between-Subject Attributes. | Jinyuan Liu, Xinlian Zhang, Tuo Lin, Ruohui Chen, Yuan Zhong, Tian Chen, Tsungchin Wu, Chenyu Liu, Anna Huang, Tanya T Nguyen, Ellen E Lee, Dilip V Jeste, Xin M Tu | Scandinavian Journal Of Statistics, Theory And Applications | 2023-11-08 |
| Remote effects of kidney drug transporter OAT1 on gut microbiome composition and urate homeostasis. | Vladimir S Ermakov, Jeffry C Granados, Sanjay K Nigam | JCI Insight | 2023-11-08 |
| Development of a Quantitative PCR Method for Detecting Cytolysin in Human Stool Samples. | Noemí Cabré, Yongqiang Yang, Yanhan Wang, Bernd Schnabl | Methods And Protocols | 2023-11-08 |
| Selective IL-27 production by intestinal regulatory T cells permits gut-specific regulation of T17 cell immunity. | Chia-Hao Lin, Cheng-Jang Wu, Sunglim Cho, Rasika Patkar, William J Huth, Ling-Li Lin, Mei-Chi Chen, Elisabeth Israelsson, Joanne Betts, Magdalena Niedzielska, Shefali A Patel, Han G Duong, Romana R Gerner, Chia-Yun Hsu, Matthew Catley, Rose A Maciewicz, Hiutung Chu, Manuela Raffatellu, John T Chang, Li-Fan Lu | Nature Immunology | 2023-11-06 |
| Jumbo phages are active against extensively drug-resistant eyedrop-associated infections. | Ana Georgina Cobián Güemes, Pooja Ghatbale, Alisha N Blanc, Chase J Morgan, Andrew Garcia, Jesse Leonard, Lina Huang, Grace Kovalick, Marissa Proost, Megan Chiu, Peiting Kuo, Joseph Oh, Smruthi Karthikeyan, Rob Knight, Joe Pogliano, Robert T Schooley, David T Pride | Antimicrobial Agents And Chemotherapy | 2023-11-06 |
| Genetic hypogonadal mouse model reveals niche-specific influence of reproductive axis and sex on intestinal microbial communities. | Laura Sisk-Hackworth, Jada Brown, Lillian Sau, Andrew A Levine, Lai Ying Ivy Tam, Aishwarya Ramesh, Reeya S Shah, Evelyn T Kelley-Thackray, Sophia Wang, Anita Nguyen, Scott T Kelley, Varykina G Thackray | Biology Of Sex Differences | 2023-11-06 |
| Clinical Practice Guideline by the Pediatric Infectious Diseases Society (PIDS) and the Infectious Diseases Society of America (IDSA): 2023 Guideline on Diagnosis and Management of Acute Bacterial Arthritis in Pediatrics. | Charles R Woods, John S Bradley, Archana Chatterjee, Matthew P Kronman, Sandra R Arnold, Joan Robinson, Lawson A Copley, Antonio Arrieta, Sandra L Fowler, Christopher Harrison, Stephen C Eppes, C Buddy Creech, Laura P Stadler, Samir S Shah, Lynnette J Mazur, Maria A Carrillo-Marquez, Coburn H Allen, Valéry Lavergne | Journal Of The Pediatric Infectious Diseases Society | 2023-11-06 |
| A combined adjuvant approach primes robust germinal center responses and humoral immunity in non-human primates. | Ivy Phung, Kristen A Rodrigues, Ester Marina-Zárate, Laura Maiorino, Bapi Pahar, Wen-Hsin Lee, Mariane Melo, Amitinder Kaur, Carolina Allers, Marissa Fahlberg, Brooke F Grasperge, Jason P Dufour, Faith Schiro, Pyone P Aye, Paul G Lopez, Jonathan L Torres, Gabriel Ozorowski, Saman Eskandarzadeh, Michael Kubitz, Erik Georgeson, Bettina Groschel, Rebecca Nedellec, Michael Bick, Katarzyna Kaczmarek Michaels, Hongmei Gao, Xiaoying Shen, Diane G Carnathan, Guido Silvestri, David C Montefiori, Andrew B Ward, Lars Hangartner, Ronald S Veazey, Dennis R Burton, William R Schief, Darrell J Irvine, Shane Crotty | Nature Communications | 2023-11-04 |
| Postacute Sequelae of SARS-CoV-2 in Children. | Suchitra Rao, Rachel S Gross, Sindhu Mohandas, Cheryl R Stein, Abigail Case, Benard Dreyer, Nathan M Pajor, H Timothy Bunnell, David Warburton, Elizabeth Berg, Jonathan B Overdevest, Mark Gorelik, Joshua Milner, Sejal Saxena, Ravi Jhaveri, John C Wood, Kyung E Rhee, Rebecca Letts, Christine Maughan, Nick Guthe, Leah Castro-Baucom, Melissa S Stockwell | Pediatrics | 2023-11-01 |
| Returning incidentally discovered Hepatitis C RNA-seq results to COPDGene study participants. | Edwin K Silverman, Arthur Y Kim, Barry J Make, Elizabeth A Regan, Jarrett D Morrow, Craig P Hersh, James O'Brien, James D Crapo, Nadia N Hansel, Gerard Criner, Eric L Flenaugh, Douglas Conrad, Richard Casaburi, Russell P Bowler, Nicola A Hanania, R Graham Barr, Surya P Bhatt, Frank C Sciurba, Antonio Anzueto, MeiLan K Han, Charlene E McEvoy, Alejandro P Comellas, Dawn L DeMeo, Richard Rosiello, Jeffrey L Curtis, Tricia Uchida, Carla Wilson, P Pearl O'Rourke | NPJ Genomic Medicine | 2023-10-31 |
| Cholesterol esterification and p53-mediated tumor suppression. | Youjun Li, Michael Karin, Edward V Prochownik | Exploration Of Targeted Anti-tumor Therapy | 2023-10-31 |
| Genome-scale metabolic modeling of the human gut bacterium Bacteroides fragilis strain 638R. | Maxwell Neal, Deepan Thiruppathy, Karsten Zengler | PLoS Computational Biology | 2023-10-30 |
| Urinary microbiome community types associated with urinary incontinence severity in women. | Megan U Carnes, Nazema Y Siddiqui, Lisa Karstens, Marie G Gantz, Darrell L Dinwiddie, Vivian W Sung, Megan Bradley, Linda Brubaker, Cecile A Ferrando, Donna Mazloomdoost, Holly E Richter, Rebecca G Rogers, Ariana L Smith, Yuko M Komesu, | American Journal Of Obstetrics And Gynecology | 2023-10-30 |
| Deciphering the 'gut-brain axis' through microbiome diversity. | Jinyuan Liu, Ke Xu, Tsungchin Wu, Lydia Yao, Tanya T Nguyen, Dilip Jeste, Xinlian Zhang | General Psychiatry | 2023-10-29 |
| HIV-1 Remission: Accelerating the Path to Permanent HIV-1 Silencing. | Danielle E Lyons, Priti Kumar, Nadia R Roan, Patricia A Defechereux, Cedric Feschotte, Ulrike C Lange, Niren Murthy, Pauline Sameshima, Eric Verdin, Julie A Ake, Matthew S Parsons, Avindra Nath, Sara Gianella, Davey M Smith, Esper G Kallas, Thomas J Villa, Richard Strange, Betty Mwesigwa, Robert L Furler O'Brien, Douglas F Nixon, Lishomwa C Ndhlovu, Susana T Valente, Melanie Ott | Viruses | 2023-10-28 |
| Domestication shapes the pig gut microbiome and immune traits from the scale of lineage to population. | Sahana Kuthyar, Jessica Diaz, Fabiola Avalos-Villatoro, Christian Maltecca, Francesco Tiezzi, Robert R Dunn, Aspen T Reese | Journal Of Evolutionary Biology | 2023-10-26 |
| Conceptual risk assessment of mosquito population modification gene-drive systems to control malaria transmission: preliminary hazards list workshops. | Ana Kormos, George Dimopoulos, Ethan Bier, Gregory C Lanzaro, John M Marshall, Anthony A James | Frontiers In Bioengineering And Biotechnology | 2023-10-26 |
| Metabolic dysregulation and gut dysbiosis linked to hyperandrogenism in female mice. | Annie Chen, Alex Handzel, Lillian Sau, Laura Cui, Scott T Kelley, Varykina G Thackray | Endocrinology, Diabetes & Metabolism | 2023-10-23 |
| Life after a fiery death: Fire and plant biomass loading affect dissolved organic matter in experimental ponds. | Cody J Spiegel, Natalie Mladenov, Christopher B Wall, Kelly Hollman, Cindy H Tran, Celia C Symons, Jonathan B Shurin | Global Change Biology | 2023-10-19 |
| Author Correction: Greengenes2 unifies microbial data in a single reference tree. | Daniel McDonald, Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio Gonzalez, James T Morton, Giorgia Nicolaou, Donovan H Parks, Søren M Karst, Mads Albertsen, Philip Hugenholtz, Todd DeSantis, Se Jin Song, Andrew Bartko, Aki S Havulinna, Pekka Jousilahti, Susan Cheng, Michael Inouye, Teemu Niiranen, Mohit Jain, Veikko Salomaa, Leo Lahti, Siavash Mirarab, Rob Knight | Nature Biotechnology | 2023-10-18 |
| Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation. | Julia M Gauglitz, Kiana A West, Wout Bittremieux, Candace L Williams, Kelly C Weldon, Morgan Panitchpakdi, Francesca Di Ottavio, Christine M Aceves, Elizabeth Brown, Nicole C Sikora, Alan K Jarmusch, Cameron Martino, Anupriya Tripathi, Michael J Meehan, Kathleen Dorrestein, Justin P Shaffer, Roxana Coras, Fernando Vargas, Lindsay DeRight Goldasich, Tara Schwartz, MacKenzie Bryant, Gregory Humphrey, Abigail J Johnson, Katharina Spengler, Pedro Belda-Ferre, Edgar Diaz, Daniel McDonald, Qiyun Zhu, Emmanuel O Elijah, Mingxun Wang, Clarisse Marotz, Kate E Sprecher, Daniela Vargas-Robles, Dana Withrow, Gail Ackermann, Lourdes Herrera, Barry J Bradford, Lucas Maciel Mauriz Marques, Juliano Geraldo Amaral, Rodrigo Moreira Silva, Flavio Protasio Veras, Thiago Mattar Cunha, Rene Donizeti Ribeiro Oliveira, Paulo Louzada-Junior, Robert H Mills, Paulina K Piotrowski, Stephanie L Servetas, Sandra M Da Silva, Christina M Jones, Nancy J Lin, Katrice A Lippa, Scott A Jackson, Rima Kaddurah Daouk, Douglas Galasko, Parambir S Dulai, Tatyana I Kalashnikova, Curt Wittenberg, Robert Terkeltaub, Megan M Doty, Jae H Kim, Kyung E Rhee, Julia Beauchamp-Walters, Kenneth P Wright, Maria Gloria Dominguez-Bello, Mark Manary, Michelli F Oliveira, Brigid S Boland, Norberto Peporine Lopes, Monica Guma, Austin D Swafford, Rachel J Dutton, Rob Knight, Pieter C Dorrestein | Nature Biotechnology | 2023-10-18 |
| Author Correction: Generation of accurate, expandable phylogenomic trees with uDance. | Metin Balaban, Yueyu Jiang, Qiyun Zhu, Daniel McDonald, Rob Knight, Siavash Mirarab | Nature Biotechnology | 2023-10-18 |
| People with HIV at the end of life and their next-of-kin/loved ones are willing to participate in interventional HIV cure-related research. | Samuel O Ndukwe, Hursch Patel, Brittany Shelton, Susanna Concha-Garcia, Cheryl Dullano, Stephanie Solso, Steven Hendrickx, Patricia K Riggs, Thomas J Villa, Andy Kaytes, Jeff Taylor, Susan J Little, David Lessard, Anish K Arora, Cecilia T Costiniuk, Shadi Eskaf, Davey M Smith, Sara Gianella, Karine Dubé | AIDS (London, England) | 2023-10-18 |
| Valence-driven colorimetric detection of norovirus protease peptide-AuNP interactions. | Chuxuan Ling, Zhicheng Jin, Justin Yeung, Elany Barbosa da Silva, Yu-Ci Chang, Tengyu He, Wonjun Yim, Anthony J O'Donoghue, Jesse V Jokerst | Chemical Communications (Cambridge, England) | 2023-10-17 |
| Microbiologist in the clinic: coitally related symptoms with negative urine cultures. | Linda Brubaker, Harry Horsley, Rajvinder Khasriya, Alan J Wolfe | International Urogynecology Journal | 2023-10-14 |
| Humanized Anti-Carcinoembryonic Antigen Antibodies Brightly Target and Label Gastric Cancer in Orthotopic Mouse Models. | Kristin E Cox, Michael A Turner, Siamak Amirfakhri, Thinzar M Lwin, Mojgan Hosseini, Pradipta Ghosh, Marygorret Obonyo, Takashi Murakami, Robert M Hoffman, Paul J Yazaki, Michael Bouvet | The Journal Of Surgical Research | 2023-10-13 |
| Biocontrol in built environments to reduce pathogen exposure and infection risk. | Neil R Gottel, Megan S Hill, Maxwell J Neal, Sarah M Allard, Karsten Zengler, Jack A Gilbert | The ISME Journal | 2023-10-09 |
| Utilization of lignocellulosic hydrolysates for photomixotrophic chemical production in Synechococcus elongatus PCC 7942. | Jake N Gonzales, Tanner R Treece, Stephen P Mayfield, Ryan Simkovsky, Shota Atsumi | Communications Biology | 2023-10-09 |
| An update on current and novel molecular diagnostics for the diagnosis of invasive fungal infections. | Jeffrey D Jenks, P Lewis White, Sarah E Kidd, Tyler Goshia, Stephanie I Fraley, Martin Hoenigl, George R Thompson | Expert Review Of Molecular Diagnostics | 2023-10-06 |
| Using Multidimensional Separations to Distinguish Isomeric Amino Acid-Bile Acid Conjugates and Assess Their Presence and Perturbations in Model Systems. | Allison K Stewart, Matthew H Foley, Michael K Dougherty, Sarah K McGill, Ajay S Gulati, Emily C Gentry, Lee R Hagey, Pieter C Dorrestein, Casey M Theriot, James N Dodds, Erin S Baker | Analytical Chemistry | 2023-10-05 |
| The Challenge of Extensively Drug-resistant Gram-negative Pathogens in Children: Newer Antibiotics and When to Use Them for Empiric and Definitive Therapy. | Elias Iosifidis, John S Bradley | The Pediatric Infectious Disease Journal | 2023-10-05 |
| Glycoproteomic landscape and structural dynamics of TIM family immune checkpoints enabled by mucinase SmE. | Joann Chongsaritsinsuk, Alexandra D Steigmeyer, Keira E Mahoney, Mia A Rosenfeld, Taryn M Lucas, Courtney M Smith, Alice Li, Deniz Ince, Fiona L Kearns, Alexandria S Battison, Marie A Hollenhorst, D Judy Shon, Katherine H Tiemeyer, Victor Attah, Catherine Kwon, Carolyn R Bertozzi, Michael J Ferracane, Mark A Lemmon, Rommie E Amaro, Stacy A Malaker | Nature Communications | 2023-10-04 |
| Human Milk Bioactive Components and Child Growth and Body Composition in the First 2 Years: A Systematic Review. | Meredith Merilee Brockway, Allison I Daniel, Sarah M Reyes, Julia M Gauglitz, Matthew Granger, Joann M McDermid, Deborah Chan, Rebecca Refvik, Karanbir K Sidhu, Suad Musse, Pooja P Patel, Caroline Monnin, Larisa Lotoski, Donna T Geddes, Fyezah Jehan, Patrick Kolsteren, Lars Bode, Kamilla G Eriksen, Lindsay H Allen, Daniela Hampel, Natalie Rodriguez, Meghan B Azad | Advances In Nutrition (Bethesda, Md.) | 2023-10-04 |
| Argonaute reduces natural transformation efficiency and provides immunity against exogenous plasmids. | Arnaud Taton, Tami S Gilderman, Dustin C Ernst, Carla A Omaga, Lucas A Cohen, Camilo Rey-Bedon, James W Golden, Susan S Golden | MBio | 2023-10-04 |
| GWAS Meta-Analysis of Suicide Attempt: Identification of 12 Genome-Wide Significant Loci and Implication of Genetic Risks for Specific Health Factors. | Anna R Docherty, Niamh Mullins, Allison E Ashley-Koch, Xuejun Qin, Jonathan R I Coleman, Andrey Shabalin, JooEun Kang, Balasz Murnyak, Frank Wendt, Mark Adams, Adrian I Campos, Emily DiBlasi, Janice M Fullerton, Henry R Kranzler, Amanda V Bakian, Eric T Monson, Miguel E Rentería, Consuelo Walss-Bass, Ole A Andreassen, Chittaranjan Behera, Cynthia M Bulik, Howard J Edenberg, Ronald C Kessler, J John Mann, John I Nurnberger, Giorgio Pistis, Fabian Streit, Robert J Ursano, Renato Polimanti, Michelle Dennis, Melanie Garrett, Lauren Hair, Philip Harvey, Elizabeth R Hauser, Michael A Hauser, Jennifer Huffman, Daniel Jacobson, Ravi Madduri, Benjamin McMahon, David W Oslin, Jodie Trafton, Swapnil Awasthi, Wade H Berrettini, Martin Bohus, Xiao Chang, Hsi-Chung Chen, Wei J Chen, Erik D Christensen, Scott Crow, Philibert Duriez, Alexis C Edwards, Fernando Fernández-Aranda, Hanga Galfalvy, Michael Gandal, Philip Gorwood, Yiran Guo, Jonathan D Hafferty, Hakon Hakonarson, Katherine A Halmi, Akitoyo Hishimoto, Sonia Jain, Stéphane Jamain, Susana Jiménez-Murcia, Craig Johnson, Allan S Kaplan, Walter H Kaye, Pamela K Keel, James L Kennedy, Minsoo Kim, Kelly L Klump, Daniel F Levey, Dong Li, Shih-Cheng Liao, Klaus Lieb, Lisa Lilenfeld, Christian R Marshall, James E Mitchell, Satoshi Okazaki, Ikuo Otsuka, Dalila Pinto, Abigail Powers, Nicolas Ramoz, Stephan Ripke, Stefan Roepke, Vsevolod Rozanov, Stephen W Scherer, Christian Schmahl, Marcus Sokolowski, Anna Starnawska, Michael Strober, Mei-Hsin Su, Laura M Thornton, Janet Treasure, Erin B Ware, Hunna J Watson, Stephanie H Witt, D Blake Woodside, Zeynep Yilmaz, Lea Zillich, Rolf Adolfsson, Ingrid Agartz, Martin Alda, Lars Alfredsson, Vivek Appadurai, María Soler Artigas, Sandra Van der Auwera, M Helena Azevedo, Nicholas Bass, Claiton H D Bau, Bernhard T Baune, Frank Bellivier, Klaus Berger, Joanna M Biernacka, Tim B Bigdeli, Elisabeth B Binder, Michael Boehnke, Marco P Boks, David L Braff, Richard Bryant, Monika Budde, Enda M Byrne, Wiepke Cahn, Enrique Castelao, Jorge A Cervilla, Boris Chaumette, Aiden Corvin, Nicholas Craddock, Srdjan Djurovic, Jerome C Foo, Andreas J Forstner, Mark Frye, Justine M Gatt, Ina Giegling, Hans J Grabe, Melissa J Green, Eugenio H Grevet, Maria Grigoroiu-Serbanescu, Blanca Gutierrez, Jose Guzman-Parra, Marian L Hamshere, Annette M Hartmann, Joanna Hauser, Stefanie Heilmann-Heimbach, Per Hoffmann, Marcus Ising, Ian Jones, Lisa A Jones, Lina Jonsson, René S Kahn, John R Kelsoe, Kenneth S Kendler, Stefan Kloiber, Karestan C Koenen, Manolis Kogevinas, Marie-Odile Krebs, Mikael Landén, Marion Leboyer, Phil H Lee, Douglas F Levinson, Calwing Liao, Jolanta Lissowska, Fermin Mayoral, Susan L McElroy, Patrick McGrath, Peter McGuffin, Andrew McQuillin, Divya Mehta, Ingrid Melle, Philip B Mitchell, Esther Molina, Gunnar Morken, Caroline Nievergelt, Markus M Nöthen, Michael C O'Donovan, Roel A Ophoff, Michael J Owen, Carlos Pato, Michele T Pato, Brenda W J H Penninx, James B Potash, Robert A Power, Martin Preisig, Digby Quested, Josep Antoni Ramos-Quiroga, Andreas Reif, Marta Ribasés, Vanesa Richarte, Marcella Rietschel, Margarita Rivera, Andrea Roberts, Gloria Roberts, Guy A Rouleau, Diego L Rovaris, Alan R Sanders, Peter R Schofield, Thomas G Schulze, Laura J Scott, Alessandro Serretti, Jianxin Shi, Lea Sirignano, Pamela Sklar, Olav B Smeland, Jordan W Smoller, Edmund J S Sonuga-Barke, Maciej Trzaskowski, Ming T Tsuang, Gustavo Turecki, Laura Vilar-Ribó, John B Vincent, Henry Völzke, James T R Walters, Cynthia Shannon Weickert, Thomas W Weickert, Myrna M Weissman, Leanne M Williams, Naomi R Wray, Clement C Zai, Esben Agerbo, Anders D Børglum, Gerome Breen, Ditte Demontis, Annette Erlangsen, Joel Gelernter, Stephen J Glatt, David M Hougaard, Hai-Gwo Hwu, Po-Hsiu Kuo, Cathryn M Lewis, Qingqin S Li, Chih-Min Liu, Nicholas G Martin, Andrew M McIntosh, Sarah E Medland, Ole Mors, Merete Nordentoft, Catherine M Olsen, David Porteous, Daniel J Smith, Eli A Stahl, Murray B Stein, Danuta Wasserman, Thomas Werge, David C Whiteman, Virginia Willour, , , , , , , , , Hilary Coon, Jean C Beckham, Nathan A Kimbrel, Douglas M Ruderfer | The American Journal Of Psychiatry | 2023-10-01 |
| A broad-based probe-free qPCR assay for detection and discrimination of three human herpes viruses. | Anshu Gupta, Shelley M Lawrence, Stephanie I Fraley | Journal Of Virological Methods | 2023-09-29 |
| Oral fungal profiling and risk of nasopharyngeal carcinoma: a population-based case-control study. | Yufeng Chen, Wanxin Li, Ellen T Chang, Justine W Debelius, Lokeshwaran Manoharan, Yuming Zheng, Yancheng Li, Guangwu Huang, Hans-Olov Adami, Rob Knight, Yonglin Cai, Zhe Zhang, Weimin Ye | EBioMedicine | 2023-09-28 |
| Directed evolution unlocks oxygen reactivity for a nicotine-degrading flavoenzyme. | Mark Dulchavsky, Rishav Mitra, Kevin Wu, Joshua Li, Karli Boer, Xiaomeng Liu, Zhiyao Zhang, Cristian Vasquez, Christopher T Clark, Kaitrin Funckes, Kokila Shankar, Selene Bonnet-Zahedi, Mohammad Siddiq, Yadira Sepulveda, Raymond T Suhandynata, Jeremiah D Momper, Antonio N Calabrese, Olivier George, Frederick Stull, James C A Bardwell | Nature Chemical Biology | 2023-09-28 |
| A Malassezia pseudoprotease dominates the secreted hydrolase landscape and is a potential allergen on skin. | Wisely Chua, Carl O Marsh, Si En Poh, Winston Lc Koh, Melody Li Ying Lee, Li Fang Koh, Xin-Zi Emily Tang, Peter See, Zheng Ser, Shi Mei Wang, Radoslaw M Sobota, Thomas L Dawson, Yik Weng Yew, Steven Thng, Anthony J O' Donoghue, Hazel H Oon, John E Common, Hao Li | Biochimie | 2023-09-23 |
| Phage therapy: Targeting intestinal bacterial microbiota for the treatment of liver diseases. | Jumpei Fujiki, Bernd Schnabl | JHEP Reports : Innovation In Hepatology | 2023-09-23 |
| Validating Tools to Detect and Inactivate Monkeypox Virus in Human Milk. | Alex E Clark, Annalee Furst, Kristija Sejane, Lisa Stellwagen, Marissa Proost, David Pride, Davey M Smith, Aaron F Carlin, Lars Bode | Breastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine | 2023-09-21 |
| Assessing the validity of fecal sampling for characterizing variation in threespine stickleback's gut microbiota. | Andreas Härer, Diana J Rennison | PloS One | 2023-09-21 |
| Discrimination of cell-intrinsic and environment-dependent effects of natural genetic variation on Kupffer cell epigenomes and transcriptomes. | Hunter Bennett, Ty D Troutman, Enchen Zhou, Nathanael J Spann, Verena M Link, Jason S Seidman, Christian K Nickl, Yohei Abe, Mashito Sakai, Martina P Pasillas, Justin M Marlman, Carlos Guzman, Mojgan Hosseini, Bernd Schnabl, Christopher K Glass | Nature Immunology | 2023-09-21 |
| Linking bacterial tetrabromopyrrole biosynthesis to coral metamorphosis. | Amanda T Alker, Morgan V Farrell, Alyssa M Demko, Trevor N Purdy, Sanjoy Adak, Bradley S Moore, Jennifer M Sneed, Valerie J Paul, Nicholas J Shikuma | ISME Communications | 2023-09-19 |
| Gardnerella vaginolysin potentiates glycan molecular mimicry by Neisseria gonorrhoeae. | Sydney R Morrill, Sudeshna Saha, Ajit P Varki, Warren G Lewis, Sanjay Ram, Amanda L Lewis | The Journal Of Infectious Diseases | 2023-09-18 |
| Gut microbiota parallelism and divergence associated with colonisation of novel habitats. | Andreas Härer, Alexander A Mauro, Telma G Laurentino, Erica B Rosenblum, Diana J Rennison | Molecular Ecology | 2023-09-16 |
| Universal Viral Screening of Newly Diagnosed Cancer Patients in the United States: A Cost Efficiency Evaluation. | Riha Vaidya, Joseph M Unger, Rohit Loomba, Jessica P Hwang, Rashmi Chugh, Monica A Tincopa, Kathryn B Arnold, Dawn L Hershman, Scott D Ramsey | Cancer Research Communications | 2023-09-14 |
| Sample preconcentration through airjet-induced liquid phase enrichment. | Edward Wang, Louise C Laurent, Drew A Hall, Yu-Hwa Lo | Lab On A Chip | 2023-09-13 |
| Laboratory evolution, transcriptomics, and modeling reveal mechanisms of paraquat tolerance. | Kevin Rychel, Justin Tan, Arjun Patel, Cameron Lamoureux, Ying Hefner, Richard Szubin, Josefin Johnsen, Elsayed Tharwat Tolba Mohamed, Patrick V Phaneuf, Amitesh Anand, Connor A Olson, Joon Ho Park, Anand V Sastry, Laurence Yang, Adam M Feist, Bernhard O Palsson | Cell Reports | 2023-09-13 |
| Sialic Acid-Siglec-E Interactions Regulate the Response of Neonatal Macrophages to Group B Streptococcus. | Sean J Lund, Pamela G B Del Rosario, Asami Honda, Kaitlin J Caoili, Marten A Hoeksema, Victor Nizet, Kathryn A Patras, Lawrence S Prince | ImmunoHorizons | 2023-09-13 |
| Subgroup analysis of phase 2 study of ceftolozane/tazobactam in neonates and young infants with pyelonephritis. | Emmanuel Roilides, John S Bradley, Julia Lonchar, Jennifer A Huntington, Prachi Wickremasingha, Feng-Hsiu Su, Christopher J Bruno, Matthew G Johnson | Microbiology Spectrum | 2023-09-12 |
| The silent burden of non-alcoholic fatty liver disease in the elderly: A global burden of disease analysis. | Pojsakorn Danpanichkul, Cheng Han Ng, Mark D Muthiah, Kwanjit Duangsonk, Jie Ning Yong, Darren Jun Hao Tan, Wen Hui Lim, Zhen Yu Wong, Nicholas Syn, Tsubasa Tsusumi, Hirokazu Takahashi, Mohammad Shadab Siddiqui, Vincent Wai-Sun Wong, Christos S Mantzoros, Daniel Q Huang, Mazen Noureddin, Rohit Loomba, Arun J Sanyal, Karn Wijarnpreecha | Alimentary Pharmacology & Therapeutics | 2023-09-11 |
| An approach to zwitterionic peptide design for colorimetric detection of the Southampton norovirus SV3CP protease. | Justin Yeung, Zhicheng Jin, Chuxuan Ling, Maurice Retout, Elany Barbosa da Silva, Manan Damani, Yu-Ci Chang, Wonjun Yim, Anthony J O'Donoghue, Jesse V Jokerst | The Analyst | 2023-09-11 |
| Design of synthetic bacterial biosensors. | Alyssa J Chiang, Jeff Hasty | Current Opinion In Microbiology | 2023-09-11 |
| Central Nervous System Antimicrobial Exposure and Proposed Dosing for Anthrax Meningitis. | John S Bradley, Jürgen B Bulitta, Rachel Cook, Patricia A Yu, Chelsea Iwamoto, Elisabeth M Hesse, Danielle Chaney, Yon Yu, Jordan L Kennedy, David Sue, Adolf W Karchmer, William A Bower, Katherine Hendricks | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2023-09-06 |
| Metabolic engineering of Synechococcus elongatus 7942 for enhanced sucrose biosynthesis. | Bo Wang, Cristal Zuniga, Michael T Guarnieri, Karsten Zengler, Michael Betenbaugh, Jamey D Young | Metabolic Engineering | 2023-09-05 |
| Reply to Augello, P.A.; Wu, J. Comment on "Rogers et al. The Combined Effects of Cannabis, Methamphetamine, and HIV on Neurocognition. 2023, , 674". | Jeffrey M Rogers, Jennifer E Iudicello, Maria Cecilia G Marcondes, Erin E Morgan, Mariana Cherner, Ronald J Ellis, Scott L Letendre, Robert K Heaton, Igor Grant | Viruses | 2023-09-05 |
| A multi-scale expression and regulation knowledge base for Escherichia coli. | Cameron R Lamoureux, Katherine T Decker, Anand V Sastry, Kevin Rychel, Ye Gao, John Luke McConn, Daniel C Zielinski, Bernhard O Palsson | Nucleic Acids Research | 2023-09-05 |
| Similarities in the induction of the intracellular pathogen response in Caenorhabditis elegans and the type I interferon response in mammals. | Vladimir Lažetić, Lakshmi E Batachari, Alistair B Russell, Emily R Troemel | BioEssays : News And Reviews In Molecular, Cellular And Developmental Biology | 2023-09-04 |
| Microbiomes and metabolomes of dominant coral reef primary producers illustrate a potential role for immunolipids in marine symbioses. | Helena Mannochio-Russo, Sean O I Swift, Kirsten K Nakayama, Christopher B Wall, Emily C Gentry, Morgan Panitchpakdi, Andrés M Caraballo-Rodriguez, Allegra T Aron, Daniel Petras, Kathleen Dorrestein, Tatiana K Dorrestein, Taylor M Williams, Eileen M Nalley, Noam T Altman-Kurosaki, Mike Martinelli, Jeff Y Kuwabara, John L Darcy, Vanderlan S Bolzani, Linda Wegley Kelly, Camilo Mora, Joanne Y Yew, Anthony S Amend, Margaret McFall-Ngai, Nicole A Hynson, Pieter C Dorrestein, Craig E Nelson | Communications Biology | 2023-08-31 |
| Portosystemic shunt placement reveals blood signatures for the development of hepatic encephalopathy through mass spectrometry. | Ana Carolina Dantas Machado, Stephany Flores Ramos, Julia M Gauglitz, Anne-Marie Fassler, Daniel Petras, Alexander A Aksenov, Un Bi Kim, Michael Lazarowicz, Abbey Barnard Giustini, Hamed Aryafar, Irine Vodkin, Curtis Warren, Pieter C Dorrestein, Ali Zarrinpar, Amir Zarrinpar | Nature Communications | 2023-08-31 |
| Metabolic programs of T cell tissue residency empower tumour immunity. | Miguel Reina-Campos, Maximilian Heeg, Kelly Kennewick, Ian T Mathews, Giovanni Galletti, Vida Luna, Quynhanh Nguyen, Hongling Huang, J Justin Milner, Kenneth H Hu, Amy Vichaidit, Natalie Santillano, Brigid S Boland, John T Chang, Mohit Jain, Sonia Sharma, Matthew F Krummel, Hongbo Chi, Steven J Bensinger, Ananda W Goldrath | Nature | 2023-08-30 |
| Urine Excretion, Organ Distribution, and Placental Transfer of 6PPD and 6PPD-Quinone in Mice and Potential Developmental Toxicity through Nuclear Receptor Pathways. | Haoqi Nina Zhao, Sydney P Thomas, Mark J Zylka, Pieter C Dorrestein, Wenxin Hu | Environmental Science & Technology | 2023-08-29 |
| Targeted and Logical Discovery of Piperazic Acid-Bearing Natural Products Based on Genomic and Spectroscopic Signatures. | Daniel Shin, Woong Sub Byun, Sangwook Kang, Ilnam Kang, Eun Seo Bae, Joon Soo An, Ji Hyeon Im, Jiyoon Park, Eunji Kim, Keebeom Ko, Sunghoon Hwang, Honghui Lee, Yun Kwon, Yoon-Joo Ko, Suckchang Hong, Sang-Jip Nam, Seung Bum Kim, William Fenical, Yeo Joon Yoon, Jang-Cheon Cho, Sang Kook Lee, Dong-Chan Oh | Journal Of The American Chemical Society | 2023-08-29 |
| Sex hormones, the stool microbiome, and subclinical atherosclerosis in women with and without HIV. | Brandilyn A Peters, David B Hanna, Yi Wang, Kathleen M Weber, Elizabeth Topper, Allison A Appleton, Anjali Sharma, Howard N Hodis, Nanette Santoro, Chantal Guillemette, Patrick Caron, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi | The Journal Of Clinical Endocrinology And Metabolism | 2023-08-29 |
| Machine learning uncovers the transcriptome in microbial communities and during infection. | Heera Bajpe, Kevin Rychel, Cameron R Lamoureux, Anand V Sastry, Bernhard O Palsson | MSystems | 2023-08-28 |
| Rescues Allergic Contact Dermatitis in Sphingosine 1-Phosphate Receptor 2-Deficient Skin. | Kana Masuda-Kuroki, Shahrzad Alimohammadi, Anna Di Nardo | International Journal Of Molecular Sciences | 2023-08-25 |
| Epidemiology of pediatric astrovirus gastroenteritis in a Nicaraguan birth cohort. | Rebecca J Rubinstein, Yaoska Reyes, Fredman González, Lester Gutiérrez, Christian Toval-Ruíz, Kelli Hammond, Lars Bode, Jan Vinjé, Samuel Vilchez, Sylvia Becker-Dreps, Filemón Bucardo, Nadja A Vielot | MedRxiv : The Preprint Server For Health Sciences | 2023-08-25 |
| Gut microbiota and fecal short chain fatty acids differ with adiposity and country of origin: the METS-microbiome study. | Gertrude Ecklu-Mensah, Candice Choo-Kang, Maria Gjerstad Maseng, Sonya Donato, Pascal Bovet, Bharathi Viswanathan, Kweku Bedu-Addo, Jacob Plange-Rhule, Prince Oti Boateng, Terrence E Forrester, Marie Williams, Estelle V Lambert, Dale Rae, Nandipha Sinyanya, Amy Luke, Brian T Layden, Stephen O'Keefe, Jack A Gilbert, Lara R Dugas | Nature Communications | 2023-08-24 |
| Ramipril for the Treatment of COVID-19: RAMIC, a Randomized, Double-Blind, Placebo-Controlled Clinical Trial. | Daniel Q Huang, Veeral Ajmera, Christian Tomaszewski, Andrew LaFree, Ricki Bettencourt, Wesley K Thompson, Davey M Smith, Atul Malhotra, Ravindra L Mehta, Vaishal Tolia, Jeffrey Yin, Paul A Insel, Stone Leachman, Jinho Jung, Summer Collier, Lisa Richards, Kristin Woods, Maral Amangurbanova, Archana Bhatt, Xinlian Zhang, Oana M Penciu, Stuart Zarich, Tamrat Retta, Michelle S Harkins, J Pedro Teixeira, Brian Chinnock, Netanya S Utay, Jordan E Lake, Rohit Loomba | Advances In Therapy | 2023-08-24 |
| Staphylococcus epidermidis activates keratinocyte cytokine expression and promotes skin inflammation through the production of phenol-soluble modulins. | Michael R Williams, Michelle D Bagood, Timothy J Enroth, Zoie L Bunch, Nina Jiang, Edward Liu, Samia Almoughrabie, Shadi Khalil, Fengwu Li, Samantha Brinton, Nadja B Cech, Alexander R Horswill, Richard L Gallo | Cell Reports | 2023-08-22 |
| A Protease-Responsive Polymer/Peptide Conjugate and Reversible Assembly of Silver Clusters for the Detection of Enzymatic Activity. | Maurice Retout, Lubna Amer, Wonjun Yim, Matthew N Creyer, Benjamin Lam, Diego F Trujillo, Jan Potempa, Anthony J O'Donoghue, Casey Chen, Jesse V Jokerst | ACS Nano | 2023-08-21 |
| Glycan-specific IgM is critical for human immunity to Staphylococcus aureus. | Astrid Hendriks, Priscilla F Kerkman, Meri R J Varkila, Jelle L G Haitsma Mulier, Sara Ali, Thijs Ten Doesschate, Thomas W van der Vaart, Carla J C de Haas, Piet C Aerts, Olaf L Cremer, Marc J M Bonten, Victor Nizet, George Y Liu, Jeroen D C Codée, Suzan H M Rooijakkers, Jos A G van Strijp, Nina M van Sorge | Cell Reports. Medicine | 2023-08-21 |
| Commensal induce epidermal lipid synthesis important for skin barrier function. | Samia Almoughrabie, Laura Cau, Kellen Cavagnero, Alan M O'Neill, Fengwu Li, Andrea Roso-Mares, Carine Mainzer, Brigitte Closs, Matthew J Kolar, Kevin J Williams, Steven J Bensinger, Richard L Gallo | Science Advances | 2023-08-18 |
| Paired microbiome and metabolome analyses associate bile acid changes with colorectal cancer progression. | Ting Fu, Tao Huan, Gibraan Rahman, Hui Zhi, Zhenjiang Xu, Tae Gyu Oh, Jian Guo, Sally Coulter, Anupriya Tripathi, Cameron Martino, Justin L McCarville, Qiyun Zhu, Fritz Cayabyab, Brian Low, Mingxiao He, Shipei Xing, Fernando Vargas, Ruth T Yu, Annette Atkins, Christopher Liddle, Janelle Ayres, Manuela Raffatellu, Pieter C Dorrestein, Michael Downes, Rob Knight, Ronald M Evans | Cell Reports | 2023-08-18 |
| Diagnosis of childhood febrile illness using a multi-class blood RNA molecular signature. | Dominic Habgood-Coote, Clare Wilson, Chisato Shimizu, Anouk M Barendregt, Ria Philipsen, Rachel Galassini, Irene Rivero Calle, Lesley Workman, Philipp K A Agyeman, Gerben Ferwerda, Suzanne T Anderson, J Merlijn van den Berg, Marieke Emonts, Enitan D Carrol, Colin G Fink, Ronald de Groot, Martin L Hibberd, John Kanegaye, Mark P Nicol, Stéphane Paulus, Andrew J Pollard, Antonio Salas, Fatou Secka, Luregn J Schlapbach, Adriana H Tremoulet, Michael Walther, Werner Zenz, , , , , , Michiel Van der Flier, Heather J Zar, Taco Kuijpers, Jane C Burns, Federico Martinón-Torres, Victoria J Wright, Lachlan J M Coin, Aubrey J Cunnington, Jethro A Herberg, Michael Levin, Myrsini Kaforou | Med (New York, N.Y.) | 2023-08-11 |
| Fast standard error estimation for joint models of longitudinal and time-to-event data based on stochastic EM algorithms. | Tingting Yu, Lang Wu, Ronald J Bosch, Davey M Smith, Rui Wang | Biostatistics (Oxford, England) | 2023-08-11 |
| Engineered bacteria detect tumor DNA. | Robert M Cooper, Josephine A Wright, Jia Q Ng, Jarrad M Goyne, Nobumi Suzuki, Young K Lee, Mari Ichinose, Georgette Radford, Feargal J Ryan, Shalni Kumar, Elaine M Thomas, Laura Vrbanac, Rob Knight, Susan L Woods, Daniel L Worthley, Jeff Hasty | Science (New York, N.Y.) | 2023-08-10 |
| A metabolite from commensal Candida albicans enhances the bactericidal activity of macrophages and protects against sepsis. | Peng Gu, Ruofan Liu, Qin Yang, Li Xie, Rongjuan Wei, Jiaxin Li, Fengyi Mei, Tao Chen, Zhenhua Zeng, Yan He, Hongwei Zhou, Hongjuan Peng, Kutty Selva Nandakumar, Huikuan Chu, Yong Jiang, Wei Gong, Ye Chen, Bernd Schnabl, Peng Chen | Cellular & Molecular Immunology | 2023-08-09 |
| The genome-scale metabolic model for the purple non-sulfur bacterium Rhodopseudomonas palustris Bis A53 accurately predicts phenotypes under chemoheterotrophic, chemoautotrophic, photoheterotrophic, and photoautotrophic growth conditions. | Diego Tec-Campos, Camila Posadas, Juan D Tibocha-Bonilla, Deepan Thiruppathy, Nathan Glonek, Cristal Zuñiga, Alejandro Zepeda, Karsten Zengler | PLoS Computational Biology | 2023-08-09 |
| Reconstruction of the last bacterial common ancestor from 183 pangenomes reveals a versatile ancient core genome. | Jason C Hyun, Bernhard O Palsson | Genome Biology | 2023-08-08 |
| Phenotypically complex living materials containing engineered cyanobacteria. | Debika Datta, Elliot L Weiss, Daniel Wangpraseurt, Erica Hild, Shaochen Chen, James W Golden, Susan S Golden, Jonathan K Pokorski | Nature Communications | 2023-08-07 |
| Meditation-induced bloodborne factors as an adjuvant treatment to COVID-19 disease. | Juan P Zuniga-Hertz, Ramamurthy Chitteti, Joe Dispenza, Raphael Cuomo, Jacqueline A Bonds, Elena L Kopp, Sierra Simpson, Jonathan Okerblom, Svetlana Maurya, Brinda K Rana, Atsushi Miyonahara, Ingrid R Niesman, Jacqueline Maree, Gianna Belza, Hillari D Hamilton, Carla Stanton, David J Gonzalez, Michelle A Poirier, Tobias Moeller-Bertram, Hemal H Patel | Brain, Behavior, & Immunity - Health | 2023-08-07 |
| The cervical microbiota of Hispanics living in Puerto Rico is nonoptimal regardless of HPV status. | Daniela Vargas-Robles, Josefina Romaguera, Ian Alvarado-Velez, Eduardo Tosado-Rodríguez, Anelisse Dominicci-Maura, Maria Sanchez, Kara J Wiggin, Magaly Martinez-Ferrer, Jack A Gilbert, Larry J Forney, Filipa Godoy-Vitorino | MSystems | 2023-08-03 |
| A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data. | Pieter Dorrestein, Simone Zuffa, Robin Schmid, Anelize Bauermeister, Paulo Wender Portal Gomes, Andres Caraballo-Rodriguez, Yasin El Abiead, Allegra Aron, Emily Gentry, Jasmine Zemlin, Michael Meehan, Nicole Avalon, Robert Cichewicz, Ekaterina Buzun, Marvic Carrillo-Terrazas, Chia-Yun Hsu, Renee Oles, Adriana Vasquez Ayala, Jiaqi Zhao, Hiutung Chu, Mirte Kuijpers, Sara Jackrel, Fidele Tugizimana, Lerato Nephali, Ian Dubery, Ntakadzeni Madala, Eduarda Moreira, Leticia Costa-Lotufo, Norberto Lopes, Paula Rezende-Teixeira, Paula Jimenez, Bipin Rimal, Andrew Patterson, Matthew Traxler, Rita de Cassia Pessotti, Daniel Alvarado-Villalobos, Giselle Tamayo-Castillo, Priscila Chaverri, Efrain Escudero-Leyva, Luis-Manuel Quiros-Guerrero, Alexandre Bory, Juliette Joubert, Adriano Rutz, Jean-Luc Wolfender, Pierre-Marie Allard, Andreas Sichert, Sammy Pontrelli, Benjamin Pullman, Nuno Bandeira, William Gerwick, Katia Gindro, Josep Massana-Codina, Berenike Wagner, Karl Forchhammer, Daniel Petras, Nicole Aiosa, Neha Garg, Manuel Liebeke, Patric Bourceau, Kyo Bin Kang, Henna Gadhavi, Luiz Pedro de Carvalho, Mariana Silva Dos Santos, Alicia Pérez-Lorente, Carlos Molina-Santiago, Diego Romero, Raimo Franke, Mark Broenstrup, Arturo Vera Ponce De Leon, Phillip Pope, Sabina La Rosa, Giorgia La Barbera, Henrik Roager, Martin Laursen, Fabian Hammerle, Bianka Siewert, Ursula Peintner, Cuauhtemoc Licona-Cassani, Lorena Rodriguez-Orduña, Evelyn Rampler, Felina Hildebrand, Gunda Koellensperger, Harald Schoeny, Katharina Hohenwallner, Lisa Panzenboeck, Rachel Gregor, Ellis O'Neill, Eve Roxborough, Jane Odoi, Nicole Bale, Su Ding, Jaap S Sinninghe Damsté, Xueli Guan, Jerry Cui, Kou-San Ju, Denise Silva, Fernanda Silva, Gilvan da Silva, Hector Koolen, Carlismari Grundmann, Jason Clement, Hosein Mohimani, Kirk Broders, Kerry McPhail, Sidnee Ober-Singleton, Christopher Rath, Daniel McDonald, Rob Knight, Mingxun Wang | Research Square | 2023-08-03 |
| Microbial short-chain fatty acids regulate drug seeking and transcriptional control in a model of cocaine seeking. | Katherine R Meckel, Sierra S Simpson, Arthur Godino, Emily G Peck, Jonathon P Sens, Michael Z Leonard, Olivier George, Erin S Calipari, Rebecca S Hofford, Drew D Kiraly | Neuropsychopharmacology : Official Publication Of The American College Of Neuropsychopharmacology | 2023-08-02 |
| A modular plasmid toolkit applied in marine bacteria reveals functional insights during bacteria-stimulated metamorphosis. | Amanda T Alker, Morgan V Farrell, Alpher E Aspiras, Tiffany L Dunbar, Andriy Fedoriouk, Jeffrey E Jones, Sama R Mikhail, Gabriella Y Salcedo, Bradley S Moore, Nicholas J Shikuma | MBio | 2023-08-02 |
| Common antibiotics, azithromycin and amoxicillin, affect gut metagenomics within a household. | Jessica Chopyk, Ana Georgina Cobián Güemes, Claudia Ramirez-Sanchez, Hedieh Attai, Melissa Ly, Marcus B Jones, Roland Liu, Chenyu Liu, Kun Yang, Xin M Tu, Shira R Abeles, Karen Nelson, David T Pride | BMC Microbiology | 2023-08-02 |
| Gut-microbiome centered therapies for alcohol-associated liver disease. | Tannaz Ranjbarian, Bernd Schnabl | Seminars In Liver Disease | 2023-08-01 |
| G protein-coupled receptors: A target for microbial metabolites and a mechanistic link to microbiome-immune-brain interactions. | Gajender Aleti, Emily A Troyer, Suzi Hong | Brain, Behavior, & Immunity - Health | 2023-07-31 |
| Compounding Phages for Therapeutic Applications. | Ana Georgina Cobián Güemes, Tram Le, Maria Isabel Rojas, Nicole E Jacobson, Helena Villela, Katelyn McNair, Shr-Hau Hung, Lili Han, Lance Boling, Jessica Claire Octavio, Lorena Dominguez, Vito Adrian Cantú, Sinéad Archdeacon, Alejandro A Vega, Michelle A An, Hamza Hajama, Gregory Burkeen, Robert A Edwards, Douglas J Conrad, Forest Rohwer, Anca M Segall | Viruses | 2023-07-30 |
| Roles for the RNA-Binding Protein Rbp2 in Regulating the Circadian Clock. | Briana M McKnight, Shannon Kang, Tam H Le, Mingxu Fang, Genelyn Carbonel, Esbeydi Rodriguez, Sutharsan Govindarajan, Nitsan Albocher-Kedem, Amanda L Tran, Nicholas R Duncan, Orna Amster-Choder, Susan S Golden, Susan E Cohen | Journal Of Biological Rhythms | 2023-07-28 |
| Adaptive evolution of a minimal organism with a synthetic genome. | Troy E Sandberg, Kim S Wise, Christopher Dalldorf, Richard Szubin, Adam M Feist, John I Glass, Bernhard O Palsson | IScience | 2023-07-28 |
| Greengenes2 unifies microbial data in a single reference tree. | Daniel McDonald, Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio Gonzalez, James T Morton, Giorgia Nicolaou, Donovan H Parks, Søren M Karst, Mads Albertsen, Philip Hugenholtz, Todd DeSantis, Se Jin Song, Andrew Bartko, Aki S Havulinna, Pekka Jousilahti, Susan Cheng, Michael Inouye, Teemu Niiranen, Mohit Jain, Veikko Salomaa, Leo Lahti, Siavash Mirarab, Rob Knight | Nature Biotechnology | 2023-07-27 |
| Generation of accurate, expandable phylogenomic trees with uDance. | Metin Balaban, Yueyu Jiang, Qiyun Zhu, Daniel McDonald, Rob Knight, Siavash Mirarab | Nature Biotechnology | 2023-07-27 |
| miR-15/16 clusters restrict effector Treg cell differentiation and function. | Jiayi Dong, William J Huth, Nimi Marcel, Ziyue Zhang, Ling-Li Lin, Li-Fan Lu | The Journal Of Experimental Medicine | 2023-07-27 |
| Murine Models of Salmonella Infection. | Gregory T Walker, Romana R Gerner, Sean-Paul Nuccio, Manuela Raffatellu | Current Protocols | 2023-07-24 |
| Cationic-nanogel nasal vaccine containing the ectodomain of RSV-small hydrophobic protein induces protective immunity in rodents. | Shingo Umemoto, Rika Nakahashi-Ouchida, Yoshikazu Yuki, Shiho Kurokawa, Tomonori Machita, Yohei Uchida, Hiromi Mori, Tomoyuki Yamanoue, Takehiko Shibata, Shin-Ichi Sawada, Kazuya Ishige, Takashi Hirano, Kohtaro Fujihashi, Kazunari Akiyoshi, Yosuke Kurashima, Daisuke Tokuhara, Peter B Ernst, Masashi Suzuki, Hiroshi Kiyono | NPJ Vaccines | 2023-07-24 |
| Fecal virome transplantation is sufficient to alter fecal microbiota and drive lean and obese body phenotypes in mice. | Joshua M Borin, Roland Liu, Yanhan Wang, Tsung-Chin Wu, Jessica Chopyk, Lina Huang, Peiting Kuo, Chandrabali Ghose, Justin R Meyer, Xin M Tu, Bernd Schnabl, David T Pride | Gut Microbes | 2023-07-21 |
| Managing HIV During the COVID-19 Pandemic: A Study of Help-Seeking Behaviors on a Social Media Forum. | John W Ayers, Zechariah Zhu, Keith Harrigian, Gwenyth P Wightman, Mark Dredze, Steffanie A Strathdee, Davey M Smith | AIDS And Behavior | 2023-07-21 |
| A comprehensive Drosophila resource to identify key functional interactions between SARS-CoV-2 factors and host proteins. | Annabel Guichard, Shenzhao Lu, Oguz Kanca, Daniel Bressan, Yan Huang, Mengqi Ma, Sara Sanz Juste, Jonathan C Andrews, Kristy L Jay, Marketta Sneider, Ruth Schwartz, Mei-Chu Huang, Danqing Bei, Hongling Pan, Liwen Ma, Wen-Wen Lin, Ankush Auradkar, Pranjali Bhagwat, Soo Park, Kenneth H Wan, Takashi Ohsako, Toshiyuki Takano-Shimizu, Susan E Celniker, Michael F Wangler, Shinya Yamamoto, Hugo J Bellen, Ethan Bier | Cell Reports | 2023-07-20 |
| Genetic and Functional Analyses of Cutibacterium Acnes Isolates Reveal the Association of a Linear Plasmid with Skin Inflammation. | Alan M O'Neill, Kellen J Cavagnero, Jason S Seidman, Livia Zaramela, Yang Chen, Fengwu Li, Teruaki Nakatsuji, Joyce Y Cheng, Yun L Tong, Tran H Do, Samantha L Brinton, Tissa R Hata, Robert L Modlin, Richard L Gallo | The Journal Of Investigative Dermatology | 2023-07-20 |
| Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP). | Sanjay Jain, Liming Pei, Jeffrey M Spraggins, Michael Angelo, James P Carson, Nils Gehlenborg, Fiona Ginty, Joana P Gonçalves, James S Hagood, John W Hickey, Neil L Kelleher, Louise C Laurent, Shin Lin, Yiing Lin, Huiping Liu, Alexandra Naba, Ernesto S Nakayasu, Wei-Jun Qian, Andrea Radtke, Paul Robson, Brent R Stockwell, Raf Van de Plas, Ioannis S Vlachos, Mowei Zhou, , Katy Börner, Michael P Snyder | Nature Cell Biology | 2023-07-19 |
| An atlas of healthy and injured cell states and niches in the human kidney. | Blue B Lake, Rajasree Menon, Seth Winfree, Qiwen Hu, Ricardo Melo Ferreira, Kian Kalhor, Daria Barwinska, Edgar A Otto, Michael Ferkowicz, Dinh Diep, Nongluk Plongthongkum, Amanda Knoten, Sarah Urata, Laura H Mariani, Abhijit S Naik, Sean Eddy, Bo Zhang, Yan Wu, Diane Salamon, James C Williams, Xin Wang, Karol S Balderrama, Paul J Hoover, Evan Murray, Jamie L Marshall, Teia Noel, Anitha Vijayan, Austin Hartman, Fei Chen, Sushrut S Waikar, Sylvia E Rosas, Francis P Wilson, Paul M Palevsky, Krzysztof Kiryluk, John R Sedor, Robert D Toto, Chirag R Parikh, Eric H Kim, Rahul Satija, Anna Greka, Evan Z Macosko, Peter V Kharchenko, Joseph P Gaut, Jeffrey B Hodgin, , Michael T Eadon, Pierre C Dagher, Tarek M El-Achkar, Kun Zhang, Matthias Kretzler, Sanjay Jain | Nature | 2023-07-19 |
| Congenital CMV associated with diaphragm dysfunction: a rare cause of tachypnoea. | Rebecca Carter, Maayan Yakir, Julie Ryu, Katherine Weiss | BMJ Case Reports | 2023-07-19 |
| Multiple pals gene modules control a balance between immunity and development in Caenorhabditis elegans. | Vladimir Lažetić, Michael J Blanchard, Theresa Bui, Emily R Troemel | PLoS Pathogens | 2023-07-18 |
| Immunization with lytic polysaccharide monooxygenase CbpD induces protective immunity against pneumonia. | Fatemeh Askarian, Chih-Ming Tsai, Gabriele Cordara, Raymond H Zurich, Elisabet Bjånes, Ole Golten, Henrik Vinther Sørensen, Armin Kousha, Angela Meier, Elvis Chikwati, Jack-Ansgar Bruun, Judith Anita Ludviksen, Biswa Choudhury, Desmond Trieu, Stanley Davis, Per Kristian Thorén Edvardsen, Tom Eirik Mollnes, George Y Liu, Ute Krengel, Douglas J Conrad, Gustav Vaaje-Kolstad, Victor Nizet | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2023-07-17 |
| Mpox vaccine and infection-driven human immune signatures: an immunological analysis of an observational study. | Hallie Cohn, Nathaniel Bloom, Gianna Y Cai, Jordan J Clark, Alison Tarke, Maria C Bermúdez-González, Deena R Altman, Luz Amarilis Lugo, Francisco Pereira Lobo, Susanna Marquez, , Jin-Qiu Chen, Wenlin Ren, Lili Qin, Jennifer L Yates, Danielle T Hunt, William T Lee, Shane Crotty, Florian Krammer, Alba Grifoni, Alessandro Sette, Viviana Simon, Camila H Coelho | The Lancet. Infectious Diseases | 2023-07-17 |
| Longitudinal flux balance analyses of a patient with episodic colonic inflammation reveals microbiome metabolic dynamics. | Arianna Basile, Almut Heinken, Johannes Hertel, Larry Smarr, Weizhong Li, Laura Treu, Giorgio Valle, Stefano Campanaro, Ines Thiele | Gut Microbes | 2023-07-14 |
| Structural and photophysical characterization of the small ultra-red fluorescent protein. | Atanu Maiti, Cosmo Z Buffalo, Saumya Saurabh, Felipe Montecinos-Franjola, Justin S Hachey, William J Conlon, Geraldine N Tran, Bakar Hassan, Kylie J Walters, Mikhail Drobizhev, W E Moerner, Partho Ghosh, Hiroshi Matsuo, Roger Y Tsien, John Y Lin, Erik A Rodriguez | Nature Communications | 2023-07-12 |
| Structure-based discovery of thiosemicarbazones as SARS-CoV-2 main protease inhibitors. | Vinícius Gonçalves Maltarollo, Elany Barbosa da Silva, Thales Kronenberger, Marina Mol Sena Andrade, Gabriel V de Lima Marques, Nereu J Cândido Oliveira, Lucianna H Santos, Celso de Oliveira Rezende Júnior, Ana C Cassiano Martinho, Danielle Skinner, Pavla Fajtová, Thaís H M Fernandes, Eduardo da Silveira Dos Santos, Poliana A Rodrigues Gazolla, Ana P Martins de Souza, Milene Lopes da Silva, Fabíola S Dos Santos, Stefânia N Lavorato, Ana C Oliveira Bretas, Diogo Teixeira Carvalho, Lucas Lopardi Franco, Stephanie Luedtke, Miriam A Giardini, Antti Poso, Luiz C Dias, Larissa M Podust, Ricardo J Alves, James McKerrow, Saulo F Andrade, Róbson R Teixeira, Jair L Siqueira-Neto, Anthony O'Donoghue, Renata B de Oliveira, Rafaela S Ferreira | Future Medicinal Chemistry | 2023-07-12 |
| Nanoscaled Discovery of a Shunt Rifamycin from Using a Three-Color GFP-Tagged Macrophage Infection Assay. | Nhan T Pham, Joana Alves, Fiona A Sargison, Reiko Cullum, Jan Wildenhain, William Fenical, Mark S Butler, David A Mead, Brendan M Duggan, J Ross Fitzgerald, James J La Clair, Manfred Auer | ACS Infectious Diseases | 2023-07-11 |
| 9,10-KODA, an α-ketol produced by the tonoplast-localized 9-lipoxygenase ZmLOX5, plays a signaling role in maize defense against insect herbivory. | Peiguo Yuan, Eli Borrego, Yong-Soon Park, Zachary Gorman, Pei-Cheng Huang, Jordan Tolley, Shawn A Christensen, Jantana Blanford, Aruna Kilaru, Robert Meeley, Hisashi Koiwa, Stefan Vidal, Alisa Huffaker, Eric Schmelz, Michael V Kolomiets | Molecular Plant | 2023-07-11 |
| Association of polygenic score and the involvement of cholinergic and glutamatergic pathways with lithium treatment response in patients with bipolar disorder. | Azmeraw T Amare, Anbupalam Thalamuthu, Klaus Oliver Schubert, Janice M Fullerton, Muktar Ahmed, Simon Hartmann, Sergi Papiol, Urs Heilbronner, Franziska Degenhardt, Fasil Tekola-Ayele, Liping Hou, Yi-Hsiang Hsu, Tatyana Shekhtman, Mazda Adli, Nirmala Akula, Kazufumi Akiyama, Raffaella Ardau, Bárbara Arias, Jean-Michel Aubry, Roland Hasler, Hélène Richard-Lepouriel, Nader Perroud, Lena Backlund, Abesh Kumar Bhattacharjee, Frank Bellivier, Antonio Benabarre, Susanne Bengesser, Joanna M Biernacka, Armin Birner, Cynthia Marie-Claire, Pablo Cervantes, Hsi-Chung Chen, Caterina Chillotti, Sven Cichon, Cristiana Cruceanu, Piotr M Czerski, Nina Dalkner, Maria Del Zompo, J Raymond DePaulo, Bruno Étain, Stephane Jamain, Peter Falkai, Andreas J Forstner, Louise Frisen, Mark A Frye, Sébastien Gard, Julie S Garnham, Fernando S Goes, Maria Grigoroiu-Serbanescu, Andreas J Fallgatter, Sophia Stegmaier, Thomas Ethofer, Silvia Biere, Kristiyana Petrova, Ceylan Schuster, Kristina Adorjan, Monika Budde, Maria Heilbronner, Janos L Kalman, Mojtaba Oraki Kohshour, Daniela Reich-Erkelenz, Sabrina K Schaupp, Eva C Schulte, Fanny Senner, Thomas Vogl, Ion-George Anghelescu, Volker Arolt, Udo Dannlowski, Detlef Dietrich, Christian Figge, Markus Jäger, Fabian U Lang, Georg Juckel, Carsten Konrad, Jens Reimer, Max Schmauß, Andrea Schmitt, Carsten Spitzer, Martin von Hagen, Jens Wiltfang, Jörg Zimmermann, Till F M Andlauer, Andre Fischer, Felix Bermpohl, Philipp Ritter, Silke Matura, Anna Gryaznova, Irina Falkenberg, Cüneyt Yildiz, Tilo Kircher, Julia Schmidt, Marius Koch, Kathrin Gade, Sarah Trost, Ida S Haussleiter, Martin Lambert, Anja C Rohenkohl, Vivien Kraft, Paul Grof, Ryota Hashimoto, Joanna Hauser, Stefan Herms, Per Hoffmann, Esther Jiménez, Jean-Pierre Kahn, Layla Kassem, Po-Hsiu Kuo, Tadafumi Kato, John Kelsoe, Sarah Kittel-Schneider, Ewa Ferensztajn-Rochowiak, Barbara König, Ichiro Kusumi, Gonzalo Laje, Mikael Landén, Catharina Lavebratt, Marion Leboyer, Susan G Leckband, Alfonso Tortorella, Mirko Manchia, Lina Martinsson, Michael J McCarthy, Susan McElroy, Francesc Colom, Vincent Millischer, Marina Mitjans, Francis M Mondimore, Palmiero Monteleone, Caroline M Nievergelt, Markus M Nöthen, Tomas Novák, Claire O'Donovan, Norio Ozaki, Andrea Pfennig, Claudia Pisanu, James B Potash, Andreas Reif, Eva Reininghaus, Guy A Rouleau, Janusz K Rybakowski, Martin Schalling, Peter R Schofield, Barbara W Schweizer, Giovanni Severino, Paul D Shilling, Katzutaka Shimoda, Christian Simhandl, Claire M Slaney, Alessio Squassina, Thomas Stamm, Pavla Stopkova, Mario Maj, Gustavo Turecki, Eduard Vieta, Julia Veeh, Stephanie H Witt, Adam Wright, Peter P Zandi, Philip B Mitchell, Michael Bauer, Martin Alda, Marcella Rietschel, Francis J McMahon, Thomas G Schulze, Scott R Clark, Bernhard T Baune | Molecular Psychiatry | 2023-07-11 |
| Pangenome analysis reveals the genetic basis for taxonomic classification of the Lactobacillaceae family. | Akanksha Rajput, Siddharth M Chauhan, Omkar S Mohite, Jason C Hyun, Omid Ardalani, Leonie J Jahn, Morten Oa Sommer, Bernhard O Palsson | Food Microbiology | 2023-07-08 |
| Protocols for in vitro reconstitution of the cyanobacterial circadian clock. | Archana Chavan, Joel Heisler, Yong-Gang Chang, Susan S Golden, Carrie L Partch, Andy LiWang | Biopolymers | 2023-07-08 |
| Bacterial cytological profiling reveals interactions between jumbo phage φKZ infection and cell wall active antibiotics in Pseudomonas aeruginosa. | Hannah Tsunemoto, Joseph Sugie, Eray Enustun, Kit Pogliano, Joe Pogliano | PloS One | 2023-07-07 |
| Enhanced cellular longevity arising from environmental fluctuations. | Yuting Liu, Zhen Zhou, Hetian Su, Songlin Wu, Gavin Ni, Alex Zhang, Lev S Tsimring, Jeff Hasty, Nan Hao | Cell Systems | 2023-07-01 |
| Antigen pressure from two founder viruses induces multiple insertions at a single antibody position to generate broadly neutralizing HIV antibodies. | Collin Joyce, Sasha Murrell, Ben Murrell, Oluwarotimi Omorodion, Lorena S Ver, Nancy Carrico, Raiza Bastidas, Rebecca Nedellec, Michael Bick, Jordan Woehl, Fangzhu Zhao, Alison Burns, Shawn Barman, Michael Appel, Alejandra Ramos, Lalinda Wickramasinghe, Kemal Eren, Thomas Vollbrecht, Davey M Smith, Sergei L Kosakovsky Pond, Ryan McBride, Charli Worth, Facundo Batista, Devin Sok, , Pascal Poignard, Bryan Briney, Ian A Wilson, Elise Landais, Dennis R Burton | PLoS Pathogens | 2023-06-29 |
| A conserved three-dimensional pattern in a Streptococcus pyogenes M protein immunogen elicits M type cross-reactivity. | Kuei-Chen Wang, Eziz Kuliyev, Victor Nizet, Partho Ghosh | The Journal Of Biological Chemistry | 2023-06-28 |
| Focusing antibody responses to the fusion peptide in rhesus macaques. | Christopher A Cottrell, Payal P Pratap, Kimberly M Cirelli, Diane G Carnathan, Chiamaka A Enemuo, Aleksandar Antanasijevic, Gabriel Ozorowski, Leigh M Sewall, Hongmei Gao, Kelli M Greene, Joel D Allen, Julia T Ngo, Yury Choe, Bartek Nogal, Murillo Silva, Jinal Bhiman, Matthias Pauthner, Darrell J Irvine, David Montefiori, Max Crispin, Dennis R Burton, Guido Silvestri, Shane Crotty, Andrew B Ward | BioRxiv : The Preprint Server For Biology | 2023-06-27 |
| Human milk immune factors, maternal nutritional status, and infant sex: The INSPIRE study. | Beatrice Caffé, Aaron Blackwell, Bethaney D Fehrenkamp, Janet E Williams, Ryan M Pace, Kimberly A Lackey, Lorena Ruiz, Juan M Rodríguez, Mark A McGuire, James A Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, Linda J Kvist, Gloria E Otoo, Rossina G Pareja, Lars Bode, Dubale Gebeyehu, Debela K Gindola, Sarah Boothman, Katherine Flores, Michelle K McGuire, Courtney L Meehan | American Journal Of Human Biology : The Official Journal Of The Human Biology Council | 2023-06-26 |
| Multi-level analysis of the gut-brain axis shows autism spectrum disorder-associated molecular and microbial profiles. | James T Morton, Dong-Min Jin, Robert H Mills, Yan Shao, Gibraan Rahman, Daniel McDonald, Qiyun Zhu, Metin Balaban, Yueyu Jiang, Kalen Cantrell, Antonio Gonzalez, Julie Carmel, Linoy Mia Frankiensztajn, Sandra Martin-Brevet, Kirsten Berding, Brittany D Needham, María Fernanda Zurita, Maude David, Olga V Averina, Alexey S Kovtun, Antonio Noto, Michele Mussap, Mingbang Wang, Daniel N Frank, Ellen Li, Wenhao Zhou, Vassilios Fanos, Valery N Danilenko, Dennis P Wall, Paúl Cárdenas, Manuel E Baldeón, Sébastien Jacquemont, Omry Koren, Evan Elliott, Ramnik J Xavier, Sarkis K Mazmanian, Rob Knight, Jack A Gilbert, Sharon M Donovan, Trevor D Lawley, Bob Carpenter, Richard Bonneau, Gaspar Taroncher-Oldenburg | Nature Neuroscience | 2023-06-26 |
| Dietary weight loss-induced improvements in metabolic function are enhanced by exercise in people with obesity and prediabetes. | Joseph W Beals, Brandon D Kayser, Gordon I Smith, George G Schweitzer, Kyleigh Kirbach, Monica L Kearney, Jun Yoshino, Gibraan Rahman, Rob Knight, Bruce W Patterson, Samuel Klein | Nature Metabolism | 2023-06-26 |
| Large library docking for novel SARS-CoV-2 main protease non-covalent and covalent inhibitors. | Elissa A Fink, Conner Bardine, Stefan Gahbauer, Isha Singh, Tyler Detomasi, Kris White, Shuo Gu, Xiaobo Wan, Jun Chen, Beatrice Ary, Isabella Glenn, Joseph O'Connell, Henry O'Donnell, Pavla Fajtová, Jiankun Lyu, Seth Vigneron, Nicholas J Young, Ivan S Kondratov, Arghavan Alisoltani, Lacy M Simons, Ramon Lorenzo-Redondo, Egon A Ozer, Judd F Hultquist, Anthony J O'Donoghue, Yurii Moroz, Jack Taunton, Adam R Renslo, John J Irwin, Adolfo García-Sastre, Brian K Shoichet, Charles S Craik | Protein Science : A Publication Of The Protein Society | 2023-06-24 |
| Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution. | Caitriona Brennan, Rodolfo A Salido, Pedro Belda-Ferre, MacKenzie Bryant, Charles Cowart, Maria D Tiu, Antonio González, Daniel McDonald, Caitlin Tribelhorn, Amir Zarrinpar, Rob Knight | MSystems | 2023-06-23 |
| Chemoproteomic identification of a DPP4 homolog in Bacteroides thetaiotaomicron. | Laura J Keller, Taylor H Nguyen, Lawrence J Liu, Brianna M Hurysz, Markus Lakemeyer, Matteo Guerra, Danielle J Gelsinger, Rachael Chanin, Nhi Ngo, Kenneth M Lum, Franco Faucher, Phillip Ipock, Micah J Niphakis, Ami S Bhatt, Anthony J O'Donoghue, Kerwyn Casey Huang, Matthew Bogyo | Nature Chemical Biology | 2023-06-22 |
| Metagenomics reveals novel microbial signatures of farm exposures in house dust. | Ziyue Wang, Kathryn R Dalton, Mikyeong Lee, Christine G Parks, Laura E Beane Freeman, Qiyun Zhu, Antonio González, Rob Knight, Shanshan Zhao, Alison A Motsinger-Reif, Stephanie J London | Frontiers In Microbiology | 2023-06-21 |
| Associations of Circulating Estrogens and Estrogen Metabolites with Fecal and Oral Microbiome in Postmenopausal Women in the Ghana Breast Health Study. | Zeni Wu, Ruth M Pfeiffer, Doratha A Byrd, Yunhu Wan, Daniel Ansong, Joe-Nat Clegg-Lamptey, Beatrice Wiafe-Addai, Lawrence Edusei, Ernest Adjei, Nicholas Titiloye, Florence Dedey, Francis Aitpillah, Joseph Oppong, Verna Vanderpuye, Ernest Osei-Bonsu, Casey L Dagnall, Kristine Jones, Amy Hutchinson, Belynda D Hicks, Thomas U Ahearn, Rob Knight, Richard Biritwum, Joel Yarney, Seth Wiafe, Baffour Awuah, Kofi Nyarko, Montserrat Garcia-Closas, Rashmi Sinha, Jonine D Figueroa, Louise A Brinton, Britton Trabert, Emily Vogtmann | Microbiology Spectrum | 2023-06-21 |
| Global branches and local states of the human gut microbiome define associations with environmental and intrinsic factors. | Julien Tap, Franck Lejzerowicz, Aurélie Cotillard, Matthieu Pichaud, Daniel McDonald, Se Jin Song, Rob Knight, Patrick Veiga, Muriel Derrien | Nature Communications | 2023-06-20 |
| Expanding the Utility of Bioinformatic Data for the Full Stereostructural Assignments of Marinolides A and B, 24- and 26-Membered Macrolactones Produced by a Chemically Exceptional Marine-Derived Bacterium. | Min Cheol Kim, Jaclyn M Winter, Reiko Cullum, Alexander J Smith, William Fenical | Marine Drugs | 2023-06-20 |
| Activation mechanism and activity of globupain, a thermostable C11 protease from the Arctic Mid-Ocean Ridge hydrothermal system. | Victoria Røyseth, Brianna M Hurysz, Anna-Karina Kaczorowska, Sebastian Dorawa, Anita-Elin Fedøy, Hasan Arsın, Mateus Sá M Serafim, Samuel A Myers, Olesia Werbowy, Tadeusz Kaczorowski, Runar Stokke, Anthony J O'Donoghue, Ida Helene Steen | Frontiers In Microbiology | 2023-06-19 |
| Bacteriophage Therapy of Multidrug-resistant Achromobacter in an 11-Year-old Boy With Cystic Fibrosis Assessed by Metagenome Analysis. | John S Bradley, Hamza Hajama, Kathryn Akong, Mary Jordan, Dayna Stout, Ryan S Rowe, Douglas J Conrad, Sara Hingtgen, Anca M Segall | The Pediatric Infectious Disease Journal | 2023-06-19 |
| A pharmacoproteomic landscape of organotypic intervention responses in Gram-negative sepsis. | Tirthankar Mohanty, Christofer A Q Karlsson, Yashuan Chao, Erik Malmström, Eleni Bratanis, Andrietta Grentzmann, Martina Mørch, Victor Nizet, Lars Malmström, Adam Linder, Oonagh Shannon, Johan Malmström | Nature Communications | 2023-06-17 |
| ants promote fungus garden hygiene using -derived metabolite cues. | Kathleen E Kyle, Sara P Puckett, Andrés Mauricio Caraballo-Rodríguez, José Rivera-Chávez, Robert M Samples, Cody E Earp, Huzefa A Raja, Cedric J Pearce, Madeleine Ernst, Justin J J van der Hooft, Madison E Adams, Nicholas H Oberlies, Pieter C Dorrestein, Jonathan L Klassen, Marcy J Balunas | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2023-06-15 |
| Host and Water Microbiota Are Differentially Linked to Potential Human Pathogen Accumulation in Oysters. | Rachel E Diner, Amy Zimmer-Faust, Emily Cooksey, Sarah Allard, Sho M Kodera, Emily Kunselman, Yash Garodia, Marc P Verhougstraete, Andrew E Allen, John Griffith, Jack A Gilbert | Applied And Environmental Microbiology | 2023-06-15 |
| The gut-liver axis and gut microbiota in health and liver disease. | Cynthia L Hsu, Bernd Schnabl | Nature Reviews. Microbiology | 2023-06-14 |
| Elucidating the CodY regulon in USA300 substrains TCH1516 and LAC. | Ye Gao, Saugat Poudel, Yara Seif, Zeyang Shen, Bernhard O Palsson | MSystems | 2023-06-13 |
| Immune resilience despite inflammatory stress promotes longevity and favorable health outcomes including resistance to infection. | Sunil K Ahuja, Muthu Saravanan Manoharan, Grace C Lee, Lyle R McKinnon, Justin A Meunier, Maristella Steri, Nathan Harper, Edoardo Fiorillo, Alisha M Smith, Marcos I Restrepo, Anne P Branum, Matthew J Bottomley, Valeria Orrù, Fabio Jimenez, Andrew Carrillo, Lavanya Pandranki, Caitlyn A Winter, Lauryn A Winter, Alvaro A Gaitan, Alvaro G Moreira, Elizabeth A Walter, Guido Silvestri, Christopher L King, Yong-Tang Zheng, Hong-Yi Zheng, Joshua Kimani, T Blake Ball, Francis A Plummer, Keith R Fowke, Paul N Harden, Kathryn J Wood, Martin T Ferris, Jennifer M Lund, Mark T Heise, Nigel Garrett, Kristen R Canady, Salim S Abdool Karim, Susan J Little, Sara Gianella, Davey M Smith, Scott Letendre, Douglas D Richman, Francesco Cucca, Hanh Trinh, Sandra Sanchez-Reilly, Joan M Hecht, Jose A Cadena Zuluaga, Antonio Anzueto, Jacqueline A Pugh, , Brian K Agan, Robert Root-Bernstein, Robert A Clark, Jason F Okulicz, Weijing He | Nature Communications | 2023-06-13 |
| Determination of Effect Sizes for Power Analysis for Microbiome Studies Using Large Microbiome Databases. | Gibraan Rahman, Daniel McDonald, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Lingjing Jiang, Climent Casals-Pascual, Daniel Hakim, Amanda Hazel Dilmore, Brent Nowinski, Shyamal Peddada, Rob Knight | Genes | 2023-06-09 |
| Elucidation of independently modulated genes in reveals carbon sources that control its expression of hemolytic toxins. | Yujiro Hirose, Saugat Poudel, Anand V Sastry, Kevin Rychel, Cameron R Lamoureux, Richard Szubin, Daniel C Zielinski, Hyun Gyu Lim, Nitasha D Menon, Helena Bergsten, Satoshi Uchiyama, Tomoki Hanada, Shigetada Kawabata, Bernhard O Palsson, Victor Nizet | MSystems | 2023-06-06 |
| Systems biology of competency in Vibrio natriegens is revealed by applying novel data analytics to the transcriptome. | Jongoh Shin, Kevin Rychel, Bernhard O Palsson | Cell Reports | 2023-06-06 |
| Perceived risks and benefits of enrolling people with HIV at the end of life in cure research in Southern California, United States. | Karine Dubé, Brittany Shelton, Hursch Patel, Samuel O Ndukwe, Susanna Concha-Garcia, Cheryl Dullano, Stephanie Solso, Steven Hendrickx, Andy Kaytes, Jeff Taylor, Thomas J Villa, Susan J Little, Patricia K Riggs, David Lessard, Anish K Arora, Cecilia T Costiniuk, Shadi Eskaf, Davey M Smith, Sara Gianella | Journal Of Virus Eradication | 2023-06-05 |
| Metabolomics of bacterial-fungal pairwise interactions reveal conserved molecular mechanisms. | Gordon T Luu, Jessica C Little, Emily C Pierce, Manon Morin, Celine A Ertekin, Benjamin E Wolfe, Oliver Baars, Rachel J Dutton, Laura M Sanchez | The Analyst | 2023-06-01 |
| TEMPORARILY REMOVED: Diagnosis of multisystem inflammatory syndrome in children by a whole-blood transcriptional signature. | Heather R Jackson, Luca Miglietta, Dominic Habgood-Coote, Giselle D'Souza, Priyen Shah, Samuel Nichols, Ortensia Vito, Oliver Powell, Maisey Salina Davidson, Chisato Shimizu, Philipp K A Agyeman, Coco R Beudeker, Karen Brengel-Pesce, Enitan D Carrol, Michael J Carter, Tisham De, Irini Eleftheriou, Marieke Emonts, Cristina Epalza, Pantelis Georgiou, Ronald De Groot, Katy Fidler, Colin Fink, Daniëlle van Keulen, Taco Kuijpers, Henriette Moll, Irene Papatheodorou, Stephane Paulus, Marko Pokorn, Andrew J Pollard, Irene Rivero-Calle, Pablo Rojo, Fatou Secka, Luregn J Schlapbach, Adriana H Tremoulet, Maria Tsolia, Effua Usuf, Michiel Van Der Flier, Ulrich Von Both, Clementien Vermont, Shunmay Yeung, Dace Zavadska, Werner Zenz, Lachlan J M Coin, Aubrey Cunnington, Jane C Burns, Victoria Wright, Federico Martinon-Torres, Jethro A Herberg, Jesus Rodriguez Manzano, Myrsini Kaforou, Michael Levin, | Journal Of The Pediatric Infectious Diseases Society | 2023-05-31 |
| Gut microbiota, circulating inflammatory markers and metabolites, and carotid artery atherosclerosis in HIV infection. | Zheng Wang, Brandilyn A Peters, MacKenzie Bryant, David B Hanna, Tara Schwartz, Tao Wang, Christopher C Sollecito, Mykhaylo Usyk, Evan Grassi, Fanua Wiek, Lauren St Peter, Wendy S Post, Alan L Landay, Howard N Hodis, Kathleen M Weber, Audrey French, Elizabeth T Golub, Jason Lazar, Deborah Gustafson, Anjali Sharma, Kathryn Anastos, Clary B Clish, Robert D Burk, Robert C Kaplan, Rob Knight, Qibin Qi | Microbiome | 2023-05-27 |
| Evaluating Demographic Representation in Clinical Trials: Use of the Adaptive Coronavirus Disease 2019 Treatment Trial (ACTT) as a Test Case. | Ana M Ortega-Villa, Noreen A Hynes, Corri B Levine, Katherine Yang, Zanthia Wiley, Nikolaus Jilg, Jing Wang, Jennifer A Whitaker, Christopher J Colombo, Seema U Nayak, Hannah Jang Kim, Nicole M Iovine, Dilek Ince, Stuart H Cohen, Adam J Langer, Jonathan M Wortham, Robert L Atmar, Hana M El Sahly, Mamta K Jain, Aneesh K Mehta, Cameron R Wolfe, Carlos A Gomez, Tatiana Beresnev, Richard A Mularski, Catharine I Paules, Andre C Kalil, Angela R Branche, Annie Luetkemeyer, Barry S Zingman, Jocelyn Voell, Michael Whitaker, Michelle S Harkins, Richard T Davey, Robert Grossberg, Sarah L George, Victor Tapson, William R Short, Varduhi Ghazaryan, Constance A Benson, Lori E Dodd, Daniel A Sweeney, Kay M Tomashek | Open Forum Infectious Diseases | 2023-05-27 |
| Responsiveness to Vedolizumab Therapy in Ulcerative Colitis is Associated With Alterations in Immune Cell-Cell Communications. | Paul Hsu, Eunice J Choi, Shefali A Patel, William H Wong, Jocelyn G Olvera, Priscilla Yao, Yi Chia Liu, Matthew S Tsai, Wei Wang, Brigid S Boland, John T Chang | Inflammatory Bowel Diseases | 2023-05-26 |
| M-PAST score is better than MAST score for the diagnosis of active fibrotic NASH. | Kento Imajo, Yusuke Saigusa, Takashi Kobayashi, Koki Nagai, Shinya Nishida, Nobuyoshi Kawamura, Hiroyoshi Doi, Michihiro Iwaki, Asako Nogami, Yasushi Honda, Takaomi Kessoku, Yuji Ogawa, Hiroyuki Kirikoshi, Satoshi Yasuda, Hidenori Toyoda, Hideki Hayashi, Shigehiro Kokubu, Daisuke Utsunomiya, Hirokazu Takahashi, Shinichi Aishima, Beom Kyung Kim, Nobuharu Tamaki, Satoru Saito, Masato Yoneda, Rohit Loomba, Atsushi Nakajima | Hepatology Research : The Official Journal Of The Japan Society Of Hepatology | 2023-05-26 |
| Divergent metabolic programmes control two populations of MAIT cells that protect the lung. | Thomas Riffelmacher, Mallory Paynich Murray, Chantal Wientjens, Shilpi Chandra, Viankail Cedillo-Castelán, Ting-Fang Chou, Sara McArdle, Christopher Dillingham, Jordan Devereaux, Aaron Nilsen, Simon Brunel, David M Lewinsohn, Jeff Hasty, Gregory Seumois, Christopher A Benedict, Pandurangan Vijayanand, Mitchell Kronenberg | Nature Cell Biology | 2023-05-25 |
| You are what you excrete. | Caitlin Guccione, Daniel McDonald, Rebecca Fielding-Miller, Kit Curtius, Rob Knight | Nature Microbiology | 2023-05-25 |
| A Community-Driven Framework to Prioritize the Use of Donated Human Biological Materials in the Context of HIV Cure-Related Research at the End of Life. | Karine Dubé, Thomas J Villa, Jeff Taylor, Andy Kaytes, David J Moore, Susan J Little, Antoine Chaillon, Davey M Smith, Sara Gianella | Pathogens & Immunity | 2023-05-24 |
| Microbiological assessment reveals that Salmonella, Shigella and Campylobacter infections are widespread in HIV infected and uninfected patients with diarrhea in Mozambique. | Delfina Fernandes Hlashwayo, Emília Virgínia Noormahomed, Leonilde Bahule, Constance Benson, Robert T Schooley, Betuel Sigaúque, Kim E Barrett, Custódio Gabriel Bila | PLOS Global Public Health | 2023-05-22 |
| Depth drives the distribution of microbial ecological functions in the coastal western Antarctic Peninsula. | Avishek Dutta, Elizabeth Connors, Rebecca Trinh, Natalia Erazo, Srishti Dasarathy, Hugh W Ducklow, Deborah K Steinberg, Oscar M Schofield, Jeff S Bowman | Frontiers In Microbiology | 2023-05-18 |
| Acute alcohol-associated hepatitis: Latest findings in non-invasive biomarkers and treatment. | Tomoo Yamazaki, Bernd Schnabl | Liver International : Official Journal Of The International Association For The Study Of The Liver | 2023-05-15 |
| Transcriptional programming of CD4 T differentiation in viral infection balances effector- and memory-associated gene expression. | Quynh P Nguyen, Kennidy K Takehara, Tianda Z Deng, Shannon O'Shea, Maximilian Heeg, Kyla D Omilusik, J Justin Milner, Sara Quon, Matthew E Pipkin, Jinyong Choi, Shane Crotty, Ananda W Goldrath | Science Immunology | 2023-05-12 |
| Tryptophan metabolism, gut microbiota, and carotid artery plaque in women with and without HIV infection. | Kai Luo, Zheng Wang, Brandilyn A Peters, David B Hanna, Tao Wang, Christopher C Sollecito, Evan Grassi, Fanua Wiek, Lauren St Peter, Mykhaylo Usyk, Wendy S Post, Alan L Landay, Howard N Hodis, Kathleen M Weber, Audrey French, Elizabeth T Golub, Jason Lazar, Deborah Gustafson, Anjali Sharma, Kathryn Anastos, Clary B Clish, Rob Knight, Robert C Kaplan, Robert D Burk, Qibin Qi | AIDS (London, England) | 2023-05-12 |
| Competition between skin antimicrobial peptides and commensal bacteria in type 2 inflammation enables survival of S. aureus. | Teruaki Nakatsuji, Samantha L Brinton, Kellen J Cavagnero, Alan M O'Neill, Yang Chen, Tatsuya Dokoshi, Anna M Butcher, Olive C Osuoji, Faiza Shafiq, Josh L Espinoza, Christopher L Dupont, Tissa R Hata, Richard L Gallo | Cell Reports | 2023-05-10 |
| Universal gut microbial relationships in the gut microbiome of wild baboons. | Kimberly E Roche, Johannes R Bjork, Mauna R Dasari, Laura Grieneisen, David A W A M Jansen, Trevor J Gould, Laurence R Gesquiere, Luis B Barreiro, Susan C Alberts, Ran Blekhman, Jack A Gilbert, Jenny Tung, Sayan Mukherjee, Elizabeth A Archie | ELife | 2023-05-09 |
| Fecal cytolysin does not predict disease severity in acutely decompensated cirrhosis and acute-on-chronic liver failure. | Phillipp Hartmann, Sonja Lang, Robert Schierwagen, Sabine Klein, Michael Praktiknjo, Jonel Trebicka, Bernd Schnabl | Hepatobiliary & Pancreatic Diseases International : HBPD INT | 2023-05-09 |
| Hepatic stellate cell stearoyl co-A desaturase activates leukotriene B4 receptor 2 - β-catenin cascade to promote liver tumorigenesis. | Sonal Sinha, Satoka Aizawa, Yasuhiro Nakano, Alexander Rialdi, Hye Yeon Choi, Rajan Shrestha, Stephanie Q Pan, Yibu Chen, Meng Li, Audrey Kapelanski-Lamoureux, Gregory Yochum, Linda Sher, Satdarshan Paul Monga, Anthoula Lazaris, Keigo Machida, Michael Karin, Ernesto Guccione, Hidekazu Tsukamoto | Nature Communications | 2023-05-08 |
| E. coli allantoinase is activated by the downstream metabolic enzyme, glycerate kinase, and stabilizes the putative allantoin transporter by direct binding. | Irina A Rodionova, Ali Hosseinnia, Sunyoung Kim, Norman Goodacre, Li Zhang, Zhongge Zhang, Bernhard Palsson, Peter Uetz, Mohan Babu, Milton H Saier | Scientific Reports | 2023-05-05 |
| Herbivorous Fish Microbiome Adaptations to Sulfated Dietary Polysaccharides. | Sheila Podell, Aaron Oliver, Linda Wegley Kelly, Wesley J Sparagon, Alvaro M Plominsky, Robert S Nelson, Lieve M L Laurens, Simona Augyte, Neil A Sims, Craig E Nelson, Eric E Allen | Applied And Environmental Microbiology | 2023-05-03 |
| Evaluation of Autoantibody Binding to Cardiac Tissue in Multisystem Inflammatory Syndrome in Children and COVID-19 Vaccination-Induced Myocarditis. | Harsita Patel, Amalia Sintou, Rasheda A Chowdhury, Stephen Rothery, Alma Octavia Iacob, Sanjay Prasad, Peter P Rainer, Federico Martinón-Torres, Vanessa Sancho-Shimizu, Chisato Shimizu, Kirsten Dummer, Adriana H Tremoulet, Jane C Burns, Susanne Sattler, Michael Levin, | JAMA Network Open | 2023-05-01 |
| Mast cell tolerance in the skin microenvironment to commensal bacteria is controlled by fibroblasts. | Anna Di Nardo, Yu-Ling Chang, Shahrzad Alimohammadi, Kana Masuda-Kuroki, Zhenping Wang, Krishna Sriram, Paul A Insel | Cell Reports | 2023-04-28 |
| Identifying the core genome of the nucleus-forming bacteriophage family and characterization of Erwinia phage RAY. | Amy Prichard, Jina Lee, Thomas G Laughlin, Amber Lee, Kyle P Thomas, Annika E Sy, Tara Spencer, Aileen Asavavimol, Allison Cafferata, Mia Cameron, Nicholas Chiu, Demyan Davydov, Isha Desai, Gabriel Diaz, Melissa Guereca, Kiley Hearst, Leyi Huang, Emily Jacobs, Annika Johnson, Samuel Kahn, Ryan Koch, Adamari Martinez, Meliné Norquist, Tyler Pau, Gino Prasad, Katrina Saam, Milan Sandhu, Angel Jose Sarabia, Siena Schumaker, Aaron Sonin, Ariya Uyeno, Alison Zhao, Kevin D Corbett, Kit Pogliano, Justin Meyer, Julianne H Grose, Elizabeth Villa, Rachel Dutton, Joe Pogliano | Cell Reports | 2023-04-28 |
| Evolutionary constraint and innovation across hundreds of placental mammals. | Matthew J Christmas, Irene M Kaplow, Diane P Genereux, Michael X Dong, Graham M Hughes, Xue Li, Patrick F Sullivan, Allyson G Hindle, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Ana M Breit, Mark Diekhans, Cornelia Fanter, Nicole M Foley, Daniel B Goodman, Linda Goodman, Kathleen C Keough, Bogdan Kirilenko, Amanda Kowalczyk, Colleen Lawless, Abigail L Lind, Jennifer R S Meadows, Lucas R Moreira, Ruby W Redlich, Louise Ryan, Ross Swofford, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Ashley R Brown, Joana Damas, Kaili Fan, John Gatesy, Jenna Grimshaw, Jeremy Johnson, Sergey V Kozyrev, Alyssa J Lawler, Voichita D Marinescu, Kathleen M Morrill, Austin Osmanski, Nicole S Paulat, BaDoi N Phan, Steven K Reilly, Daniel E Schäffer, Cynthia Steiner, Megan A Supple, Aryn P Wilder, Morgan E Wirthlin, James R Xue, , Bruce W Birren, Steven Gazal, Robert M Hubley, Klaus-Peter Koepfli, Tomas Marques-Bonet, Wynn K Meyer, Martin Nweeia, Pardis C Sabeti, Beth Shapiro, Arian F A Smit, Mark S Springer, Emma C Teeling, Zhiping Weng, Michael Hiller, Danielle L Levesque, Harris A Lewin, William J Murphy, Arcadi Navarro, Benedict Paten, Katherine S Pollard, David A Ray, Irina Ruf, Oliver A Ryder, Andreas R Pfenning, Kerstin Lindblad-Toh, Elinor K Karlsson | Science (New York, N.Y.) | 2023-04-28 |
| The contribution of historical processes to contemporary extinction risk in placental mammals. | Aryn P Wilder, Megan A Supple, Ayshwarya Subramanian, Anish Mudide, Ross Swofford, Aitor Serres-Armero, Cynthia Steiner, Klaus-Peter Koepfli, Diane P Genereux, Elinor K Karlsson, Kerstin Lindblad-Toh, Tomas Marques-Bonet, Violeta Munoz Fuentes, Kathleen Foley, Wynn K Meyer, , Oliver A Ryder, Beth Shapiro | Science (New York, N.Y.) | 2023-04-28 |
| Engineering longevity-design of a synthetic gene oscillator to slow cellular aging. | Zhen Zhou, Yuting Liu, Yushen Feng, Stephen Klepin, Lev S Tsimring, Lorraine Pillus, Jeff Hasty, Nan Hao | Science (New York, N.Y.) | 2023-04-27 |
| Gut microbiome and atrial fibrillation-results from a large population-based study. | Joonatan Palmu, Christin S Börschel, Alfredo Ortega-Alonso, Lajos Markó, Michael Inouye, Pekka Jousilahti, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Friederike Gutmann, Dominik Linz, Veikko Salomaa, Aki S Havulinna, Sofia K Forslund, Rob Knight, Leo Lahti, Teemu Niiranen, Renate B Schnabel | EBioMedicine | 2023-04-27 |
| Apoptotic cell death in disease-Current understanding of the NCCD 2023. | Ilio Vitale, Federico Pietrocola, Emma Guilbaud, Stuart A Aaronson, John M Abrams, Dieter Adam, Massimiliano Agostini, Patrizia Agostinis, Emad S Alnemri, Lucia Altucci, Ivano Amelio, David W Andrews, Rami I Aqeilan, Eli Arama, Eric H Baehrecke, Siddharth Balachandran, Daniele Bano, Nickolai A Barlev, Jiri Bartek, Nicolas G Bazan, Christoph Becker, Francesca Bernassola, Mathieu J M Bertrand, Marco E Bianchi, Mikhail V Blagosklonny, J Magarian Blander, Giovanni Blandino, Klas Blomgren, Christoph Borner, Carl D Bortner, Pierluigi Bove, Patricia Boya, Catherine Brenner, Petr Broz, Thomas Brunner, Rune Busk Damgaard, George A Calin, Michelangelo Campanella, Eleonora Candi, Michele Carbone, Didac Carmona-Gutierrez, Francesco Cecconi, Francis K-M Chan, Guo-Qiang Chen, Quan Chen, Youhai H Chen, Emily H Cheng, Jerry E Chipuk, John A Cidlowski, Aaron Ciechanover, Gennaro Ciliberto, Marcus Conrad, Juan R Cubillos-Ruiz, Peter E Czabotar, Vincenzo D'Angiolella, Mads Daugaard, Ted M Dawson, Valina L Dawson, Ruggero De Maria, Bart De Strooper, Klaus-Michael Debatin, Ralph J Deberardinis, Alexei Degterev, Giannino Del Sal, Mohanish Deshmukh, Francesco Di Virgilio, Marc Diederich, Scott J Dixon, Brian D Dynlacht, Wafik S El-Deiry, John W Elrod, Kurt Engeland, Gian Maria Fimia, Claudia Galassi, Carlo Ganini, Ana J Garcia-Saez, Abhishek D Garg, Carmen Garrido, Evripidis Gavathiotis, Motti Gerlic, Sourav Ghosh, Douglas R Green, Lloyd A Greene, Hinrich Gronemeyer, Georg Häcker, György Hajnóczky, J Marie Hardwick, Ygal Haupt, Sudan He, David M Heery, Michael O Hengartner, Claudio Hetz, David A Hildeman, Hidenori Ichijo, Satoshi Inoue, Marja Jäättelä, Ana Janic, Bertrand Joseph, Philipp J Jost, Thirumala-Devi Kanneganti, Michael Karin, Hamid Kashkar, Thomas Kaufmann, Gemma L Kelly, Oliver Kepp, Adi Kimchi, Richard N Kitsis, Daniel J Klionsky, Ruth Kluck, Dmitri V Krysko, Dagmar Kulms, Sharad Kumar, Sergio Lavandero, Inna N Lavrik, John J Lemasters, Gianmaria Liccardi, Andreas Linkermann, Stuart A Lipton, Richard A Lockshin, Carlos López-Otín, Tom Luedde, Marion MacFarlane, Frank Madeo, Walter Malorni, Gwenola Manic, Roberto Mantovani, Saverio Marchi, Jean-Christophe Marine, Seamus J Martin, Jean-Claude Martinou, Pier G Mastroberardino, Jan Paul Medema, Patrick Mehlen, Pascal Meier, Gerry Melino, Sonia Melino, Edward A Miao, Ute M Moll, Cristina Muñoz-Pinedo, Daniel J Murphy, Maria Victoria Niklison-Chirou, Flavia Novelli, Gabriel Núñez, Andrew Oberst, Dimitry Ofengeim, Joseph T Opferman, Moshe Oren, Michele Pagano, Theocharis Panaretakis, Manolis Pasparakis, Josef M Penninger, Francesca Pentimalli, David M Pereira, Shazib Pervaiz, Marcus E Peter, Paolo Pinton, Giovanni Porta, Jochen H M Prehn, Hamsa Puthalakath, Gabriel A Rabinovich, Krishnaraj Rajalingam, Kodi S Ravichandran, Markus Rehm, Jean-Ehrland Ricci, Rosario Rizzuto, Nirmal Robinson, Cecilia M P Rodrigues, Barak Rotblat, Carla V Rothlin, David C Rubinsztein, Thomas Rudel, Alessandro Rufini, Kevin M Ryan, Kristopher A Sarosiek, Akira Sawa, Emre Sayan, Kate Schroder, Luca Scorrano, Federico Sesti, Feng Shao, Yufang Shi, Giuseppe S Sica, John Silke, Hans-Uwe Simon, Antonella Sistigu, Anastasis Stephanou, Brent R Stockwell, Flavie Strapazzon, Andreas Strasser, Liming Sun, Erwei Sun, Qiang Sun, Gyorgy Szabadkai, Stephen W G Tait, Daolin Tang, Nektarios Tavernarakis, Carol M Troy, Boris Turk, Nicoletta Urbano, Peter Vandenabeele, Tom Vanden Berghe, Matthew G Vander Heiden, Jacqueline L Vanderluit, Alexei Verkhratsky, Andreas Villunger, Silvia von Karstedt, Anne K Voss, Karen H Vousden, Domagoj Vucic, Daniela Vuri, Erwin F Wagner, Henning Walczak, David Wallach, Ruoning Wang, Ying Wang, Achim Weber, Will Wood, Takahiro Yamazaki, Huang-Tian Yang, Zahra Zakeri, Joanna E Zawacka-Pankau, Lin Zhang, Haibing Zhang, Boris Zhivotovsky, Wenzhao Zhou, Mauro Piacentini, Guido Kroemer, Lorenzo Galluzzi | Cell Death And Differentiation | 2023-04-26 |
| Sequence-structure-function relationships in the microbial protein universe. | Julia Koehler Leman, Pawel Szczerbiak, P Douglas Renfrew, Vladimir Gligorijevic, Daniel Berenberg, Tommi Vatanen, Bryn C Taylor, Chris Chandler, Stefan Janssen, Andras Pataki, Nick Carriero, Ian Fisk, Ramnik J Xavier, Rob Knight, Richard Bonneau, Tomasz Kosciolek | Nature Communications | 2023-04-26 |
| Susceptibility antibiotic screening reveals high rates of multidrug resistance of Salmonella, Shigella and Campylobacter in HIV infected and uninfected patients from Mozambique. | Delfina F Hlashwayo, Emília V Noormahomed, Leonilde Bahule, Constance A Benson, Robert T Schooley, Betuel Sigaúque, Kim E Barrett, Custódio G Bila | BMC Infectious Diseases | 2023-04-21 |
| Preface: Gamma-Delta T Cells in Inflammation Part 1. | Benjamin Bonavida, Vipin Kumar | Critical Reviews In Immunology | 2023-04-21 |
| Crosstalk between skin microbiota and immune system in health and disease. | Qian Liu, Ryan Ranallo, Carmen Rios, Elizabeth A Grice, Kyung Moon, Richard L Gallo | Nature Immunology | 2023-04-20 |
| Kernel-based genetic association analysis for microbiome phenotypes identifies host genetic drivers of beta-diversity. | Hongjiao Liu, Wodan Ling, Xing Hua, Jee-Young Moon, Jessica S Williams-Nguyen, Xiang Zhan, Anna M Plantinga, Ni Zhao, Angela Zhang, Rob Knight, Qibin Qi, Robert D Burk, Robert C Kaplan, Michael C Wu | Microbiome | 2023-04-20 |
| A CRISPR-enhanced metagenomic NGS test to improve pandemic preparedness. | Agnes P Chan, Azeem Siddique, Yvain Desplat, Yongwook Choi, Sridhar Ranganathan, Kumari Sonal Choudhary, M Faizan Khalid, Josh Diaz, Jon Bezney, Dante DeAscanis, Zenas George, Shukmei Wong, William Selleck, Jolene Bowers, Victoria Zismann, Lauren Reining, Sarah Highlander, Keith Brown, Jon R Armstrong, Yaron Hakak, Nicholas J Schork | Cell Reports Methods | 2023-04-18 |
| Safety and Efficacy of Combination SARS-CoV-2 Neutralizing Monoclonal Antibodies Amubarvimab Plus Romlusevimab in Nonhospitalized Patients With COVID-19. | Teresa H Evering, Kara W Chew, Mark J Giganti, Carlee Moser, Mauricio Pinilla, David Alain Wohl, Judith S Currier, Joseph J Eron, Arzhang Cyrus Javan, Rachel Bender Ignacio, David Margolis, Qing Zhu, Ji Ma, Lijie Zhong, Li Yan, Ulises D'Andrea Nores, Keila Hoover, Bharat Mocherla, Manish C Choudhary, Rinki Deo, Justin Ritz, William A Fischer, Courtney V Fletcher, Jonathan Z Li, Michael D Hughes, Davey Smith, Eric S Daar, | Annals Of Internal Medicine | 2023-04-18 |
| Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments. | Alexander B Chase, Alexander Bogdanov, Alyssa M Demko, Paul R Jensen | The ISME Journal | 2023-04-15 |
| The cell surface of a diatom from the bacterial perspective. | Emma E George | Journal Of Phycology | 2023-04-14 |
| Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome. | Bryn C Taylor, Mohammadsobhan Sheikh Andalibi, Stephen Wandro, Kelly C Weldon, Gregory D Sepich-Poore, Carolina S Carpenter, Serena Fraraccio, Donald Franklin, Jennifer E Iudicello, Scott Letendre, Sara Gianella, Igor Grant, Ronald J Ellis, Robert K Heaton, Rob Knight, Austin D Swafford | Microorganisms | 2023-04-14 |
| Toll-like receptor 2 activation in monocytes contributes to systemic inflammation and alcohol-associated liver disease in humans. | Luca Maccioni, Joyce Kasavuli, Sophie Leclercq, Boris Pirlot, Géraldine Laloux, Yves Horsmans, Isabelle Leclercq, Bernd Schnabl, Peter Stärkel | Hepatology Communications | 2023-04-14 |
| An integrated view of anti-inflammatory and antifibrotic targets for the treatment of NASH. | Frank Tacke, Tobias Puengel, Rohit Loomba, Scott L Friedman | Journal Of Hepatology | 2023-04-13 |
| Role of the Microbiome in Gut-Heart-Kidney Cross Talk. | Griet Glorieux, Sanjay K Nigam, Raymond Vanholder, Francis Verbeke | Circulation Research | 2023-04-13 |
| Chromosomal fragile site breakage by EBV-encoded EBNA1 at clustered repeats. | Julia Su Zhou Li, Ammal Abbasi, Dong Hyun Kim, Scott M Lippman, Ludmil B Alexandrov, Don W Cleveland | Nature | 2023-04-12 |
| Viral predation pressure on coral reefs. | Cynthia B Silveira, Antoni Luque, Andreas F Haas, Ty N F Roach, Emma E George, Ben Knowles, Mark Little, Christopher J Sullivan, Natascha S Varona, Linda Wegley Kelly, Russel Brainard, Forest Rohwer, Barbara Bailey | BMC Biology | 2023-04-11 |
| DNA architectural protein CTCF facilitates subset-specific chromatin interactions to limit the formation of memory CD8 T cells. | Sara Quon, Bingfei Yu, Brendan E Russ, Kirill Tsyganov, Hongtuyet Nguyen, Clara Toma, Maximilian Heeg, James D Hocker, J Justin Milner, Shane Crotty, Matthew E Pipkin, Stephen J Turner, Ananda W Goldrath | Immunity | 2023-04-10 |
| Part 2 Preface: Immune Checkpoint Inhibitors and Adverse Autoimmune Manifestations. | Vipin Kumar, Benjamin Bonavida | Critical Reviews In Immunology | 2023-04-10 |
| Preface Part 1: Immune Checkpoint Inhibitors and Autoimmunity. | Vipin Kumar, Benjamin Bonavida | Critical Reviews In Immunology | 2023-04-07 |
| Review of Major Social Determinants of Health in Schizophrenia-Spectrum Psychotic Disorders: III. Biology. | Dilip V Jeste, Dolores Malaspina, Kara Bagot, Deanna M Barch, Steve Cole, Faith Dickerson, Amanda Dilmore, Charles L Ford, Nicole R Karcher, Joan Luby, Tarek Rajji, Adrián A Pinto-Tomas, Larry J Young | Schizophrenia Bulletin | 2023-04-06 |
| Effects of a ketogenic and low-fat diet on the human metabolome, microbiome, and foodome in adults at risk for Alzheimer's disease. | Amanda Hazel Dilmore, Cameron Martino, Bryan J Neth, Kiana A West, Jasmine Zemlin, Gibraan Rahman, Morgan Panitchpakdi, Michael J Meehan, Kelly C Weldon, Colette Blach, Leyla Schimmel, Rima Kaddurah-Daouk, Pieter C Dorrestein, Rob Knight, Suzanne Craft, | Alzheimer's & Dementia : The Journal Of The Alzheimer's Association | 2023-04-05 |
| The Escherichia coli Fur pan-regulon has few conserved but many unique regulatory targets. | Ye Gao, Ina Bang, Yara Seif, Donghyuk Kim, Bernhard O Palsson | Nucleic Acids Research | 2023-04-05 |
| Evolving approaches to profiling the microbiome in skin disease. | Yang Chen, Rob Knight, Richard L Gallo | Frontiers In Immunology | 2023-04-04 |
| Whole-genome sequences from wild-type and laboratory-evolved strains define the alleleome and establish its hallmarks. | Edward Alexander Catoiu, Patrick Phaneuf, Jonathan Monk, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2023-04-03 |
| Safety and Efficacy of Combined Tixagevimab and Cilgavimab Administered Intramuscularly or Intravenously in Nonhospitalized Patients With COVID-19: 2 Randomized Clinical Trials. | Rachel A Bender Ignacio, Kara W Chew, Carlee Moser, Judith S Currier, Joseph J Eron, Arzhang Cyrus Javan, Mark J Giganti, Evgenia Aga, Michael Gibbs, Hervé Tchouakam Kouekam, Eva Johnsson, Mark T Esser, Keila Hoover, Gene Neytman, Matthew Newell, Eric S Daar, William Fischer, Courtney V Fletcher, Jonathan Z Li, Alexander L Greninger, Robert W Coombs, Michael D Hughes, Davey Smith, David Alain Wohl, | JAMA Network Open | 2023-04-03 |
| A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century. | Erhard Bremer, Alexandra Calteau, Antoine Danchin, Colin Harwood, John D Helmann, Claudine Médigue, Bernhard O Palsson, Agnieszka Sekowska, David Vallenet, Abril Zuniga, Cristal Zuniga | Microbial Biotechnology | 2023-04-01 |
| Transmissible SARS-CoV-2 variants with resistance to clinical protease inhibitors. | Seyed Arad Moghadasi, Emmanuel Heilmann, Ahmed Magdy Khalil, Christina Nnabuife, Fiona L Kearns, Chengjin Ye, Sofia N Moraes, Francesco Costacurta, Morgan A Esler, Hideki Aihara, Dorothee von Laer, Luis Martinez-Sobrido, Timothy Palzkill, Rommie E Amaro, Reuben S Harris | Science Advances | 2023-03-29 |
| Survival Trends in Sorafenib for Advanced Hepatocellular Carcinoma: A Reconstructed Individual Patient Data Meta-Analysis of Randomized Trials. | Darren Jun Hao Tan, Ansel Shao Pin Tang, Wen Hui Lim, Cheng Han Ng, Benjamin Nah, Clarissa Fu, Jieling Xiao, Benjamin Koh, Phoebe Wen Lin Tay, Eunice X Tan, Margaret Teng, Nicholas Syn, Mark D Muthiah, Nobuharu Tamaki, Sung Won Lee, Beom Kyung Kim, Thomas Yau, Arndt Vogel, Rohit Loomba, Daniel Q Huang | Liver Cancer | 2023-03-28 |
| Global epidemiology of cirrhosis - aetiology, trends and predictions. | Daniel Q Huang, Norah A Terrault, Frank Tacke, Lise Lotte Gluud, Marco Arrese, Elisabetta Bugianesi, Rohit Loomba | Nature Reviews. Gastroenterology & Hepatology | 2023-03-28 |
| The transcription factor Mef2d regulates B:T synapse-dependent GC-T differentiation and IL-21-mediated humoral immunity. | Ye-Ji Kim, Jeein Oh, Soohan Jung, Chan Johng Kim, Jinyong Choi, Yoon Kyung Jeon, Hyun Jik Kim, Ji-Won Kim, Chang-Hee Suh, Yoontae Lee, Sin-Hyeog Im, Shane Crotty, Youn Soo Choi | Science Immunology | 2023-03-24 |
| Reconstructing the landscape of gut microbial species across 29,000 diverse individuals. | Igor Segota, Jeramie D Watrous, Edward D Kantz, Shriram Nallamshetty, Saumya Tiwari, Susan Cheng, Mohit Jain, Tao Long | Nucleic Acids Research | 2023-03-24 |
| Mitigating the risk of antimalarial resistance via covalent dual-subunit inhibition of the Plasmodium proteasome. | Ioanna Deni, Barbara H Stokes, Kurt E Ward, Kate J Fairhurst, Charisse Flerida A Pasaje, Tomas Yeo, Shirin Akbar, Heekuk Park, Ryan Muir, Daniella S Bick, Wenhu Zhan, Hao Zhang, Yi Jing Liu, Caroline L Ng, Laura A Kirkman, Jehad Almaliti, Alexandra E Gould, Maëlle Duffey, Anthony J O'Donoghue, Anne-Catrin Uhlemann, Jacquin C Niles, Paula C A da Fonseca, William H Gerwick, Gang Lin, Matthew Bogyo, David A Fidock | Cell Chemical Biology | 2023-03-22 |
| The Underappreciated Role of Secretory IgA in IBD. | Giorgos Bamias, Konstantina Kitsou, Jesús Rivera-Nieves | Inflammatory Bowel Diseases | 2023-03-21 |
| Synchronization of the circadian clock to the environment tracked in real time. | Mingxu Fang, Archana G Chavan, Andy LiWang, Susan S Golden | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2023-03-20 |
| Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria. | Andre Mu, William P Klare, Sarah L Baines, C N Ignatius Pang, Romain Guérillot, Nichaela Harbison-Price, Nadia Keller, Jonathan Wilksch, Nguyen Thi Khanh Nhu, Minh-Duy Phan, Bernhard Keller, Brunda Nijagal, Dedreia Tull, Saravanan Dayalan, Hwa Huat Charlie Chua, Dominik Skoneczny, Jason Koval, Abderrahman Hachani, Anup D Shah, Nitika Neha, Snehal Jadhav, Sally R Partridge, Amanda J Cork, Kate Peters, Olivia Bertolla, Stephan Brouwer, Steven J Hancock, Laura Álvarez-Fraga, David M P De Oliveira, Brian Forde, Ashleigh Dale, Warasinee Mujchariyakul, Calum J Walsh, Ian Monk, Anna Fitzgerald, Mabel Lum, Carolina Correa-Ospina, Piklu Roy Chowdhury, Robert G Parton, James De Voss, James Beckett, Francois Monty, Jessica McKinnon, Xiaomin Song, John R Stephen, Marie Everest, Matt I Bellgard, Matthew Tinning, Michael Leeming, Dianna Hocking, Leila Jebeli, Nancy Wang, Nouri Ben Zakour, Serhat A Yasar, Stefano Vecchiarelli, Tonia Russell, Thiri Zaw, Tyrone Chen, Don Teng, Zena Kassir, Trevor Lithgow, Adam Jenney, Jason N Cole, Victor Nizet, Tania C Sorrell, Anton Y Peleg, David L Paterson, Scott A Beatson, Jemma Wu, Mark P Molloy, Anna E Syme, Robert J A Goode, Adam A Hunter, Grahame Bowland, Nicholas P West, Marc R Wilkins, Steven P Djordjevic, Mark R Davies, Torsten Seemann, Benjamin P Howden, Dana Pascovici, Sonika Tyagi, Ralf B Schittenhelm, David P De Souza, Malcolm J McConville, Jonathan R Iredell, Stuart J Cordwell, Richard A Strugnell, Timothy P Stinear, Mark A Schembri, Mark J Walker | Nature Communications | 2023-03-18 |
| Microbial colonization programs are structured by breastfeeding and guide healthy respiratory development. | Liat Shenhav, Kelsey Fehr, Myrtha E Reyna, Charisse Petersen, Darlene L Y Dai, Ruixue Dai, Vanessa Breton, Laura Rossi, Marek Smieja, Elinor Simons, Michael A Silverman, Maayan Levy, Lars Bode, Catherine J Field, Jean S Marshall, Theo J Moraes, Piush J Mandhane, Stuart E Turvey, Padmaja Subbarao, Michael G Surette, Meghan B Azad | Cell | 2023-03-17 |
| The Evolution of Assessing Central Nervous System Complications in Human Immunodeficiency Virus: Where Do We Go From Here? | Roger C McIntosh, Uraina S Clark, Mariana Cherner, Lucette A Cysique, Robert K Heaton, Jules Levin, Robert H Remien, April Thames, David J Moore, Leah H Rubin | The Journal Of Infectious Diseases | 2023-03-17 |
| Optimization of nutrient utilization efficiency and productivity for algal cultures under light and dark cycles using genome-scale model process control. | Chien-Ting Li, Richard Eng, Cristal Zuniga, Kai-Wen Huang, Yiqun Chen, Karsten Zengler, Michael J Betenbaugh | NPJ Systems Biology And Applications | 2023-03-15 |
| Characterization of SARS-CoV-2 Distribution and Microbial Succession in a Clinical Microbiology Testing Facility during the SARS-CoV-2 Pandemic. | Govind Prasad Sah, Grace Kovalick, Jessica Chopyk, Peiting Kuo, Lina Huang, Pooja Ghatbale, Promi Das, Susan Realegeno, Rob Knight, Jack A Gilbert, David T Pride | Microbiology Spectrum | 2023-03-14 |
| Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut. | Matthew H Foley, Morgan E Walker, Allison K Stewart, Sarah O'Flaherty, Emily C Gentry, Shakshi Patel, Violet V Beaty, Garrison Allen, Meichen Pan, Joshua B Simpson, Caroline Perkins, Molly E Vanhoy, Michael K Dougherty, Sarah K McGill, Ajay S Gulati, Pieter C Dorrestein, Erin S Baker, Matthew R Redinbo, Rodolphe Barrangou, Casey M Theriot | Nature Microbiology | 2023-03-13 |
| Effectiveness of BNT162b2 and CoronaVac vaccines against omicron in children aged 5 to 11 years. | Eduardo A Oliveira, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Ludmila R Silva, Daniella B Martelli, Clara C Pinhati, Hercílio Martelli-Júnior | World Journal Of Pediatrics : WJP | 2023-03-13 |
| Shared genetic architecture between attention-deficit/hyperactivity disorder and lifespan. | Laura Vilar-Ribó, Judit Cabana-Domínguez, Lourdes Martorell, Josep Antoni Ramos-Quiroga, Sandra Sanchez-Roige, Abraham A Palmer, Elisabet Vilella, Marta Ribasés, Gerard Muntané, María Soler Artigas | Neuropsychopharmacology : Official Publication Of The American College Of Neuropsychopharmacology | 2023-03-11 |
| Association of the gut microbiome with kidney function and damage in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL). | Brandilyn A Peters, Qibin Qi, Mykhaylo Usyk, Martha L Daviglus, Jianwen Cai, Nora Franceschini, James P Lash, Marc D Gellman, Bing Yu, Eric Boerwinkle, Rob Knight, Robert D Burk, Robert C Kaplan | Gut Microbes | 2023-03-08 |
| Captive and urban environments are associated with distinct gut microbiota in deer mice (). | Jessica Diaz, Kent H Redford, Aspen T Reese | Biology Letters | 2023-03-08 |
| Engineered bacteria producing aryl-hydrocarbon receptor agonists protect against ethanol-induced liver disease in mice. | Tetsuya Kouno, Suling Zeng, Yanhan Wang, Yi Duan, Sonja Lang, Bei Gao, Phillipp Hartmann, Noemí Cabré, Cristina Llorente, Chloé Galbert, Patrick Emond, Harry Sokol, Michael James, Chun Cheih Chao, Jian-Rong Gao, Mylene Perreault, David L Hava, Bernd Schnabl | Alcoholism, Clinical And Experimental Research | 2023-03-05 |
| Plasma metabolites with mechanistic and clinical links to the neurovascular disease cavernous angioma. | Abhinav Srinath, Bingqing Xie, Ying Li, Je Yeong Sone, Sharbel Romanos, Chang Chen, Anukriti Sharma, Sean Polster, Pieter C Dorrestein, Kelly C Weldon, Dorothy DeBiasse, Thomas Moore, Rhonda Lightle, Janne Koskimäki, Dongdong Zhang, Agnieszka Stadnik, Kristina Piedad, Matthew Hagan, Abdallah Shkoukani, Julián Carrión-Penagos, Dehua Bi, Le Shen, Robert Shenkar, Yuan Ji, Ashley Sidebottom, Eric Pamer, Jack A Gilbert, Mark L Kahn, Mark D'Souza, Dinanath Sulakhe, Issam A Awad, Romuald Girard | Communications Medicine | 2023-03-03 |
| The Combined Effects of Cannabis, Methamphetamine, and HIV on Neurocognition. | Jeffrey M Rogers, Jennifer E Iudicello, Maria Cecilia G Marcondes, Erin E Morgan, Mariana Cherner, Ronald J Ellis, Scott L Letendre, Robert K Heaton, Igor Grant | Viruses | 2023-03-03 |
| Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol. | Matthew A Pendergraft, Pedro Belda-Ferre, Daniel Petras, Clare K Morris, Brock A Mitts, Allegra T Aron, MacKenzie Bryant, Tara Schwartz, Gail Ackermann, Greg Humphrey, Ethan Kaandorp, Pieter C Dorrestein, Rob Knight, Kimberly A Prather | Environmental Science & Technology | 2023-03-02 |
| Cell specialization in cyanobacterial biofilm development revealed by expression of a cell-surface and extracellular matrix protein. | Alona Frenkel, Eli Zecharia, Daniel Gómez-Pérez, Eleonora Sendersky, Yevgeni Yegorov, Avi Jacob, Jennifer I C Benichou, York-Dieter Stierhof, Rami Parnasa, Susan S Golden, Eric Kemen, Rakefet Schwarz | NPJ Biofilms And Microbiomes | 2023-03-02 |
| Piezophilic Phenotype Is Growth Condition Dependent and Correlated with the Regulation of Two Sets of ATPase in Deep-Sea Piezophilic Bacterium SS9. | An-Qi Li, Wei-Jia Zhang, Xue-Gong Li, Xu-Chong Bao, Xiao-Qing Qi, Long-Fei Wu, Douglas H Bartlett | Microorganisms | 2023-03-02 |
| Identification of CD8+ T cell - immune cell communications in ileal Crohn's disease. | Han G Duong, Eunice J Choi, Paul Hsu, Natalie R Chiang, Shefali A Patel, Jocelyn G Olvera, Yi Chia Liu, Yun Hsuan Lin, Priscilla Yao, William H Wong, Cynthia S Indralingam, Matthew S Tsai, Brigid S Boland, Wei Wang, John T Chang | Clinical And Translational Gastroenterology | 2023-03-01 |
| Complete Genome Sequence of an Escherichia coli Strain Isolated from Laboratory Mouse Stool for Use as a Chassis for Transgene Delivery to the Murine Microbiome. | Nicole Siguenza, Baylee J Russell, R Alexander Richter, Amir Zarrinpar | Microbiology Resource Announcements | 2023-03-01 |
| Marinobazzanan, a Bazzanane-Type Sesquiterpenoid, Suppresses the Cell Motility and Tumorigenesis in Cancer Cells. | Sultan Pulat, Prima F Hillman, Sojeong Kim, Ratnakar N Asolkar, Haerin Kim, Rui Zhou, İsa Taş, Chathurika D B Gamage, Mücahit Varlı, So-Yeon Park, Sung Chul Park, Inho Yang, Jongheon Shin, Dong-Chan Oh, Hangun Kim, Sang-Jip Nam, William Fenical | Marine Drugs | 2023-02-25 |
| The Gut Microbial Bile Acid Modulation and its Relevance to Digestive Health and Diseases. | Kelly A Fogelson, Pieter C Dorrestein, Amir Zarrinpar, Rob Knight | Gastroenterology | 2023-02-23 |
| Immunoglobulin Y antibodies against cytolysin reduce ethanol-induced liver disease in mice. | Noemí Cabré, Phillipp Hartmann, Cristina Llorente, Tetsuya Kouno, Yanhan Wang, Suling Zeng, Hyun Young Kim, Xinlian Zhang, Tatiana Kisseleva, Subramanian Iyer, Sirisha Kudumala, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2023-02-23 |
| Diet Quality and the Fecal Microbiota in Adults in the American Gut Project. | Alexis D Baldeon, Daniel McDonald, Antonio Gonzalez, Rob Knight, Hannah D Holscher | The Journal Of Nutrition | 2023-02-22 |
| Oral mucosal breaks trigger anti-citrullinated bacterial and human protein antibody responses in rheumatoid arthritis. | R Camille Brewer, Tobias V Lanz, Caryn R Hale, Gregory D Sepich-Poore, Cameron Martino, Austin D Swafford, Thomas S Carroll, Sarah Kongpachith, Lisa K Blum, Serra E Elliott, Nathalie E Blachere, Salina Parveen, John Fak, Vicky Yao, Olga Troyanskaya, Mayu O Frank, Michelle S Bloom, Shaghayegh Jahanbani, Alejandro M Gomez, Radhika Iyer, Nitya S Ramadoss, Orr Sharpe, Sangeetha Chandrasekaran, Lindsay B Kelmenson, Qian Wang, Heidi Wong, Holly L Torres, Mark Wiesen, Dana T Graves, Kevin D Deane, V Michael Holers, Rob Knight, Robert B Darnell, William H Robinson, Dana E Orange | Science Translational Medicine | 2023-02-22 |
| Determination of the Chromatin Openness in Bacterial Genomes. | Mahmoud M Al-Bassam, Karsten Zengler | Methods In Molecular Biology (Clifton, N.J.) | 2023-02-22 |
| Terpene biosynthesis in marine sponge animals. | Kayla Wilson, Tristan de Rond, Immo Burkhardt, Taylor S Steele, Rebecca J B Schäfer, Sheila Podell, Eric E Allen, Bradley S Moore | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2023-02-21 |
| Selective IL-27 production by intestinal regulatory T cells permits gut-specific regulation of Th17 immunity. | Chia-Hao Lin, Cheng-Jang Wu, Sunglim Cho, Rasika Patkar, Ling-Li Lin, Mei-Chi Chen, Elisabeth Israelsson, Joanne Betts, Magdalena Niedzielska, Shefali A Patel, Han G Duong, Romana R Gerner, Chia-Yun Hsu, Matthew Catley, Rose A Maciewicz, Hiutung Chu, Manuela Raffatellu, John T Chang, Li-Fan Lu | BioRxiv : The Preprint Server For Biology | 2023-02-21 |
| Symptom and Viral Rebound in Untreated SARS-CoV-2 Infection. | Rinki Deo, Manish C Choudhary, Carlee Moser, Justin Ritz, Eric S Daar, David A Wohl, Alexander L Greninger, Joseph J Eron, Judith S Currier, Michael D Hughes, Davey M Smith, Kara W Chew, Jonathan Z Li, | Annals Of Internal Medicine | 2023-02-21 |
| Differences in Bacterial Translocation and Liver Injury in Ethanol Versus Diet-Induced Liver Disease. | Cynthia L Hsu, Yanhan Wang, Yi Duan, Huikuan Chu, Phillipp Hartmann, Cristina Llorente, Rongrong Zhou, Bernd Schnabl | Digestive Diseases And Sciences | 2023-02-20 |
| Microbiome response in an urban river system is dominated by seasonality over wastewater treatment upgrades. | Sho M Kodera, Anukriti Sharma, Cameron Martino, Melissa Dsouza, Mark Grippo, Holly L Lutz, Rob Knight, Jack A Gilbert, Cristina Negri, Sarah M Allard | Environmental Microbiome | 2023-02-19 |
| Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause deadly disease. | Panpan Zhou, Ge Song, Hejun Liu, Meng Yuan, Wan-Ting He, Nathan Beutler, Xueyong Zhu, Longping V Tse, David R Martinez, Alexandra Schäfer, Fabio Anzanello, Peter Yong, Linghang Peng, Katharina Dueker, Rami Musharrafieh, Sean Callaghan, Tazio Capozzola, Oliver Limbo, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, David Nemazee, Joseph G Jardine, Yana Safonova, Bryan Briney, Thomas F Rogers, Ian A Wilson, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees Andrabi | Immunity | 2023-02-16 |
| A broad-spectrum synthetic antibiotic that does not evoke bacterial resistance. | Douglas M Heithoff, Scott P Mahan, Lucien Barnes V, Semen A Leyn, Cyril X George, Jaime E Zlamal, Jakkarin Limwongyut, Guillermo C Bazan, Jeffrey C Fried, Lynn N Fitzgibbons, John K House, Charles E Samuel, Andrei L Osterman, David A Low, Michael J Mahan | EBioMedicine | 2023-02-15 |
| Using machine learning to improve our understanding of COVID-19 infection in children. | Shraddha Piparia, Andrew Defante, Kelan Tantisira, Julie Ryu | PloS One | 2023-02-15 |
| Viral Receptor-Binding Protein Evolves New Function through Mutations That Cause Trimer Instability and Functional Heterogeneity. | Hannah M Strobel, Sweetzel D Labador, Dwaipayan Basu, Mrudula Sane, Kevin D Corbett, Justin R Meyer | Molecular Biology And Evolution | 2023-02-14 |
| APOBEC3A Catalytic Inactivity Mutation Induces Tertiary Structure Destabilization. | Katherine F M Jones, Mohamed Shehata, Michael A Carpenter, Rommie E Amaro, Daniel A Harki | ACS Medicinal Chemistry Letters | 2023-02-14 |
| Metagenome-Assembled Genomes from Murine Fecal Microbiomes Dominated by Uncharacterized Bacteria. | Kiarash Rastegar, Scott T Kelley, Varykina G Thackray | Microbiology Resource Announcements | 2023-02-13 |
| Nafcillin Augmentation of Daptomycin and Cathelicidin LL-37 Killing of Methicillin-resistant Staphylococcus epidermidis: Foundations of Successful Therapy of Endocarditis. | Lucy Catteau, Yvan Diaz Iglesias, Hannah Tsunemoto, Joseph Pogliano, Françoise Van Bambeke, Victor Nizet, George Sakoulas | International Journal Of Antimicrobial Agents | 2023-02-10 |
| Diverse Microbial Hot Spring Mat Communities at Black Canyon of the Colorado River. | Ivan J Moreno, Bianca Brahamsha, Mohamed S Donia, Brian Palenik | Microbial Ecology | 2023-02-09 |
| Man vs Microbes - The Race of the Century. | Ericka Anderson, Bipin Nair, Victor Nizet, Geetha Kumar | Journal Of Medical Microbiology | 2023-02-07 |
| Malice in Chains. | Joshua Osowicki, Victor Nizet | The Journal Of Infectious Diseases | 2023-02-07 |
| T Cell Responses to SARS-CoV-2. | Alessandro Sette, John Sidney, Shane Crotty | Annual Review Of Immunology | 2023-02-07 |
| Laboratory evolution reveals general and specific tolerance mechanisms for commodity chemicals. | Rebecca M Lennen, Hyun Gyu Lim, Kristian Jensen, Elsayed T Mohammed, Patrick V Phaneuf, Myung Hyun Noh, Sailesh Malla, Rosa A Börner, Ksenia Chekina, Emre Özdemir, Ida Bonde, Anna Koza, Jérôme Maury, Lasse E Pedersen, Lars Y Schöning, Nikolaus Sonnenschein, Bernhard O Palsson, Alex T Nielsen, Morten O A Sommer, Markus J Herrgård, Adam M Feist | Metabolic Engineering | 2023-02-03 |
| The Molecular Effect of Wearing Silver-Threaded Clothing on the Human Skin. | Alexey V Melnik, Chris Callewaert, Kathleen Dorrestein, Rosie Broadhead, Jeremiah J Minich, Madeleine Ernst, Greg Humphrey, Gail Ackermann, Rob Gathercole, Alexander A Aksenov, Rob Knight, Pieter C Dorrestein | MSystems | 2023-02-01 |
| Acute and Postacute COVID-19 Outcomes Among Immunologically Naive Adults During Delta vs Omicron Waves. | Margaret K Doll, Alpana Waghmare, Antje Heit, Brianna Levenson Shakoor, Louise E Kimball, Nina Ozbek, Rachel L Blazevic, Larry Mose, Jim Boonyaratanakornkit, Terry L Stevens-Ayers, Kevin Cornell, Benjamin D Sheppard, Emma Hampson, Faria Sharmin, Benjamin Goodwin, Jennifer M Dan, Tom Archie, Terry O'Connor, David Heckerman, Frank Schmitz, Michael Boeckh, Shane Crotty | JAMA Network Open | 2023-02-01 |
| A Camptothetin Analog, Topotecan, Promotes HIV Latency via Interference with HIV Transcription and RNA Splicing. | Amey Mukim, Davey M Smith, Savitha Deshmukh, Andrew A Qazi, Nadejda Beliakova-Bethell | Journal Of Virology | 2023-01-31 |
| Qualitative interviews to evaluate content validity of the ACTIV-2 COVID-19 Symptom Diary (ACSD). | Louis S Matza, Katie D Stewart, April N Naegeli, Kayla M Mills, Karin S Coyne, Kara W Chew, Michael D Hughes, Davey M Smith | Journal Of Patient-reported Outcomes | 2023-01-31 |
| Early transcriptional and epigenetic divergence of CD8+ T cells responding to acute versus chronic infection. | Lauren K Quezada, Wenhao Jin, Yi Chia Liu, Eleanor S Kim, Zhaoren He, Cynthia S Indralingam, Tiffani Tysl, Lara Labarta-Bajo, Ellen J Wehrens, Yeara Jo, Katelynn R Kazane, Christopher Hattori, Elina I Zuniga, Gene W Yeo, John T Chang | PLoS Biology | 2023-01-30 |
| Author Correction: Long-primed germinal centres with enduring affinity maturation and clonal migration. | Jeong Hyun Lee, Henry J Sutton, Christopher A Cottrell, Ivy Phung, Gabriel Ozorowski, Leigh M Sewall, Rebecca Nedellec, Catherine Nakao, Murillo Silva, Sara T Richey, Jonathan L Torres, Wen-Hsin Lee, Erik Georgeson, Michael Kubitz, Sam Hodges, Tina-Marie Mullen, Yumiko Adachi, Kimberly M Cirelli, Amitinder Kaur, Carolina Allers, Marissa Fahlberg, Brooke F Grasperge, Jason P Dufour, Faith Schiro, Pyone P Aye, Oleksandr Kalyuzhniy, Alessia Liguori, Diane G Carnathan, Guido Silvestri, Xiaoying Shen, David C Montefiori, Ronald S Veazey, Andrew B Ward, Lars Hangartner, Dennis R Burton, Darrell J Irvine, William R Schief, Shane Crotty | Nature | 2023-01-30 |
| Enhancer-instructed epigenetic landscape and chromatin compartmentalization dictate a primary antibody repertoire protective against specific bacterial pathogens. | E Mauricio Barajas-Mora, Lindsay Lee, Hanbin Lu, J Andrés Valderrama, Elisabet Bjanes, Victor Nizet, Ann J Feeney, Ming Hu, Cornelis Murre | Nature Immunology | 2023-01-30 |
| Malassezia restricta promotes alcohol-induced liver injury. | Suling Zeng, Phillipp Hartmann, Minji Park, Yi Duan, Sonja Lang, Cristina Llorente, Yanhan Wang, Noemí Cabré, Derrick E Fouts, Petra Bacher, Won Hee Jung, Peter Stärkel, Bernd Schnabl | Hepatology Communications | 2023-01-27 |
| Insulin-regulated serine and lipid metabolism drive peripheral neuropathy. | Michal K Handzlik, Jivani M Gengatharan, Katie E Frizzi, Grace H McGregor, Cameron Martino, Gibraan Rahman, Antonio Gonzalez, Ana M Moreno, Courtney R Green, Lucie S Guernsey, Terry Lin, Patrick Tseng, Yoichiro Ideguchi, Regis J Fallon, Amandine Chaix, Satchidananda Panda, Prashant Mali, Martina Wallace, Rob Knight, Marin L Gantner, Nigel A Calcutt, Christian M Metallo | Nature | 2023-01-25 |
| Deep-learning optimized DEOCSU suite provides an iterable pipeline for accurate ChIP-exo peak calling. | Ina Bang, Sang-Mok Lee, Seojoung Park, Joon Young Park, Linh Khanh Nong, Ye Gao, Bernhard O Palsson, Donghyuk Kim | Briefings In Bioinformatics | 2023-01-25 |
| One Week of Oral Camostat Versus Placebo in Nonhospitalized Adults With Mild-to-Moderate Coronavirus Disease 2019: A Randomized Controlled Phase 2 Trial. | Nikolaus Jilg, Kara W Chew, Mark J Giganti, Eric S Daar, David A Wohl, Arzhang Cyrus Javan, Amy Kantor, Carlee Moser, Robert W Coombs, Gene Neytman, Keila Hoover, Atasi Jana, Phil A Hart, Alexander L Greninger, Bob Szurgot, Joseph J Eron, Judith S Currier, Michael D Hughes, Davey M Smith, Jonathan Z Li, | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2023-01-25 |
| Integrated Multi-Cohort Analysis of the Parkinson's Disease Gut Metagenome. | Joseph C Boktor, Gil Sharon, Leo A Verhagen Metman, Deborah A Hall, Phillip A Engen, Zoe Zreloff, Daniel J Hakim, John W Bostick, James Ousey, Danielle Lange, Gregory Humphrey, Gail Ackermann, Martha Carlin, Rob Knight, Ali Keshavarzian, Sarkis K Mazmanian | Movement Disorders : Official Journal Of The Movement Disorder Society | 2023-01-24 |
| Hepatic pIgR-mediated secretion of IgA limits bacterial translocation and prevents ethanol-induced liver disease in mice. | Tim Hendrikx, Sonja Lang, Dragana Rajcic, Yanhan Wang, Sara McArdle, Kenneth Kim, Zbigniew Mikulski, Bernd Schnabl | Gut | 2023-01-23 |
| Comprehensive evaluation of shotgun metagenomics, amplicon sequencing, and harmonization of these platforms for epidemiological studies. | Mykhaylo Usyk, Brandilyn A Peters, Smruthi Karthikeyan, Daniel McDonald, Christopher C Sollecito, Yoshiki Vazquez-Baeza, Justin P Shaffer, Marc D Gellman, Gregory A Talavera, Martha L Daviglus, Bharat Thyagarajan, Rob Knight, Qibin Qi, Robert Kaplan, Robert D Burk | Cell Reports Methods | 2023-01-23 |
| Safety and Efficacy of Ceftolozane/Tazobactam Versus Meropenem in Neonates and Children With Complicated Urinary Tract Infection, Including Pyelonephritis: A Phase 2, Randomized Clinical Trial. | Emmanuel Roilides, Negar Ashouri, John S Bradley, Matthew G Johnson, Julia Lonchar, Feng-Hsiu Su, Jennifer A Huntington, Myra W Popejoy, Mekki Bensaci, Carisa De Anda, Elizabeth G Rhee, Christopher J Bruno | The Pediatric Infectious Disease Journal | 2023-01-23 |
| Predictors of COVID-19 vaccine uptake among people who inject drugs. | Steffanie A Strathdee, Daniela Abramovitz, Carlos F Vera, Irina Artamonova, Thomas L Patterson, Davey M Smith, Antoine Chaillon, Angela R Bazzi | Vaccine | 2023-01-23 |
| A tissue atlas of ulcerative colitis revealing evidence of sex-dependent differences in disease-driving inflammatory cell types and resistance to TNF inhibitor therapy. | Aaron T Mayer, Derek R Holman, Anav Sood, Utkarsh Tandon, Salil S Bhate, Sunil Bodapati, Graham L Barlow, Jeff Chang, Sarah Black, Erica C Crenshaw, Alexander N Koron, Sarah E Streett, Sanjiv S Gambhir, William J Sandborn, Brigid S Boland, Trevor Hastie, Robert Tibshirani, John T Chang, Garry P Nolan, Christian M Schürch, Stephan Rogalla | Science Advances | 2023-01-20 |
| Model-driven experimental design workflow expands understanding of regulatory role of Nac in . | Joon Young Park, Sang-Mok Lee, Ali Ebrahim, Zoe K Scott-Nevros, Jaehyung Kim, Laurence Yang, Anand Sastry, Sang Woo Seo, Bernhard O Palsson, Donghyuk Kim | NAR Genomics And Bioinformatics | 2023-01-20 |
| Detection of Bacteria in Bladder Mucosa of Adult Females. | Alan J Wolfe, David J Rademacher, Carine R Mores, Robert J Evans, Tyler Overholt, Thomas Halverson, Roberto Limeira, Catherine Matthews, Gopal Badlani, Linda Brubaker, Stephen J Walker | The Journal Of Urology | 2023-01-19 |
| Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research. | Jack A Gilbert, Irene L G Newton, Gemma Reguera | MSystems | 2023-01-19 |
| Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research. | Jack A Gilbert, Irene L G Newton, Gemma Reguera | Applied And Environmental Microbiology | 2023-01-19 |
| Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research. | Jack A Gilbert, Irene L G Newton, Gemma Reguera | Microbiology Resource Announcements | 2023-01-19 |
| Association of subjective and objective measures of sleep with gut microbiota composition and diversity in older men: The Osteoporotic Fractures in Men (MrOS) study. | Mehrbod Estaki, Lisa Langsetmo, Michelle Shardell, Anna Mischel, Lingjing Jiang, Yuan Zhong, Christopher Kaufmann, Rob Knight, Katie Stone, Deborah Kado | The Journals Of Gerontology. Series A, Biological Sciences And Medical Sciences | 2023-01-19 |
| Ablation of Adar1 in myeloid cells imprints a global antiviral state in the lung and heightens early immunity against SARS-CoV-2. | Julia Z Adamska, Rohit Verma, Shakti Gupta, Thomas Hagan, Florian Wimmers, Katharine Floyd, Qin Li, Erika V Valore, Yanli Wang, Meera Trisal, José G Vilches-Moure, Shankar Subramaniam, Carl R Walkley, Mehul S Suthar, Jin Billy Li, Bali Pulendran | Cell Reports | 2023-01-17 |
| Cataloging natural sialic acids and other nonulosonic acids (NulOs), and their representation using the Symbol Nomenclature for Glycans. | Amanda L Lewis, Philip Toukach, Evan Bolton, Xi Chen, Martin Frank, Thomas Lütteke, Yuriy Knirel, Ian Schoenhofen, Ajit Varki, Evgeny Vinogradov, Robert J Woods, Natasha Zachara, Jian Zhang, Johannis P Kamerling, Sriram Neelamegham, | Glycobiology | 2023-01-15 |
| Stability of the fecal and oral microbiome over two years at -80°C for multiple collection methods. | Semi Zouiouich, Doratha A Byrd, Xing Hua, Smriti Karwa, Yunhu Wan, Jianxin Shi, Gregory C Humphrey, Gail L Ackermann, Rob Knight, Christian C Abnet, Emily Vogtmann, Rashmi Sinha | Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology | 2023-01-13 |
| Any alcohol use in NAFLD patients is associated with significant changes to the intestinal virome. | Cynthia L Hsu, Sonja Lang, Münevver Demir, Derrick E Fouts, Peter Stärkel, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2023-01-13 |
| Genomic and Spectroscopic Signature-Based Discovery of Natural Macrolactams. | Yern-Hyerk Shin, Ji Hyeon Im, Ilnam Kang, Eunji Kim, Sung Chul Jang, Eunji Cho, Daniel Shin, Sunghoon Hwang, Young Eun Du, Thanh-Hau Huynh, Keebeom Ko, Yoon-Joo Ko, Sang-Jip Nam, Takayoshi Awakawa, Jeeyeon Lee, Suckchang Hong, Ikuro Abe, Bradley S Moore, William Fenical, Yeo Joon Yoon, Jang-Cheon Cho, Sang Kook Lee, Ki-Bong Oh, Dong-Chan Oh | Journal Of The American Chemical Society | 2023-01-12 |
| Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an Model for Cheese Communities. | Christina C Saak, Emily C Pierce, Cong B Dinh, Daniel Portik, Richard Hall, Meredith Ashby, Rachel J Dutton | MSystems | 2023-01-09 |
| Comprehensive whole genome sequencing with hybrid assembly of multi-drug resistant isolate causing cerebral abscess. | Monika Kumaraswamy, Alison Coady, Richard Szubin, Thomas Cs Martin, Bernhard Palsson, Victor Nizet, Jonathan M Monk | Current Research In Microbial Sciences | 2023-01-09 |
| Interactions between perceived stress and microbial-host immune components: two demographically and geographically distinct pregnancy cohorts. | Beatriz Peñalver Bernabé, Pauline M Maki, Janet L Cunningham, Tory Eisenlohr-Moul, Lisa Tussing-Humphreys, Ian M Carroll, Samantha Meltzer-Brody, Jack A Gilbert, Mary Kimmel | Translational Psychiatry | 2023-01-06 |
| Stability, robustness, and containment: preparing synthetic biology for real-world deployment. | Shalni Kumar, Jeff Hasty | Current Opinion In Biotechnology | 2023-01-06 |
| Residential green environments are associated with human milk oligosaccharide diversity and composition. | Mirkka Lahdenperä, Laura Galante, Carlos Gonzales-Inca, Jussi Vahtera, Jaana Pentti, Samuli Rautava, Niina Käyhkö, Chloe Yonemitsu, Julia Gupta, Lars Bode, Hanna Lagström | Scientific Reports | 2023-01-05 |
| Wastewater surveillance for public health. | Joshua I Levy, Kristian G Andersen, Rob Knight, Smruthi Karthikeyan | Science (New York, N.Y.) | 2023-01-05 |
| Natural killer cells for antiviral therapy. | Davey M Smith, Jolie R Schafer, Brian Tullius, Laura Witkam, Silke Paust | Science Translational Medicine | 2023-01-04 |
| Can a mucosal microbiota signature predict disease severity, survival, and disease recurrence in PSC? | Phillipp Hartmann, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2023-01-03 |
| Mutualism-enhancing mutations dominate early adaptation in a two-species microbial community. | Sandeep Venkataram, Huan-Yu Kuo, Erik F Y Hom, Sergey Kryazhimskiy | Nature Ecology & Evolution | 2023-01-02 |
| Cocirculation and replacement of SARS-CoV-2 variants in crowded settings and marginalized populations along the US-Mexico border. | Antoine Chaillon, Ietza Bojorquez, Jaime Sepúlveda, Alicia Yolanda Harvey-Vera, M Gudelia Rangel, Britt Skaathun, Sanjay R Mehta, Caroline Ignacio, Magali Porrachia, Davey M Smith, Steffanie A Strathdee | Salud Publica De Mexico | 2023-01-02 |
| Higher-order interactions shape microbial interactions as microbial community complexity increases. | Manon A Morin, Anneliese J Morrison, Michael J Harms, Rachel J Dutton | Scientific Reports | 2022-12-31 |
| Antiviral therapy use and related outcomes in patients with cancer and viral infections: results from SWOG S1204. | Jessica P Hwang, Kathryn B Arnold, Joseph M Unger, Rashmi Chugh, Monica A Tincopa, Rohit Loomba, Dawn Hershman, Scott D Ramsey | Supportive Care In Cancer : Official Journal Of The Multinational Association Of Supportive Care In Cancer | 2022-12-31 |
| Mitigating Infectious morbidity and Growth deficits in HIV-exposed uninfected infanTs with human Milk Oligosaccharide (MIGH-T MO): a randomised trial protocol. | Rupak Shivakoti, Amy L Slogrove, Barbara Laughton, Mehr Shafiq, Elisma Schoeman, Richard H Glashoff, Cheng-Shiun Leu, Shuang Wang, Lars Bode, Grace Aldrovandi, Louise Kuhn | BMJ Open | 2022-12-30 |
| High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917. | Max van 't Hof, Omkar S Mohite, Jonathan M Monk, Tilmann Weber, Bernhard O Palsson, Morten O A Sommer | BMC Bioinformatics | 2022-12-30 |
| Breastfeeding enrichment of B. longum subsp. infantis mitigates the effect of antibiotics on the microbiota and childhood asthma risk. | Darlene L Y Dai, Charisse Petersen, Courtney Hoskinson, Kate L Del Bel, Allan B Becker, Theo J Moraes, Piushkumar J Mandhane, B Brett Finlay, Elinor Simons, Anita L Kozyrskyj, David M Patrick, Padmaja Subbarao, Lars Bode, Meghan B Azad, Stuart E Turvey | Med (New York, N.Y.) | 2022-12-29 |
| The gut microbiome is a significant risk factor for future chronic lung disease. | Yang Liu, Shu Mei Teo, Guillaume Meric, Howard H F Tang, Qiyun Zhu, Jon G Sanders, Yoshiki Vazquez-Baeza, Karin Verspoor, Ville A Vartiainen, Pekka Jousilahti, Leo Lahti, Teemu Niiranen, Aki S Havulinna, Rob Knight, Veikko Salomaa, Michael Inouye | The Journal Of Allergy And Clinical Immunology | 2022-12-29 |
| SREBP signaling is essential for effective B cell responses. | Wei Luo, Julia Z Adamska, Chunfeng Li, Rohit Verma, Qing Liu, Thomas Hagan, Florian Wimmers, Shakti Gupta, Yupeng Feng, Wenxia Jiang, Jiehao Zhou, Erika Valore, Yanli Wang, Meera Trisal, Shankar Subramaniam, Timothy F Osborne, Bali Pulendran | Nature Immunology | 2022-12-28 |
| In vitro Activity of Ceftaroline Against an International Collection of Kingella kingae Isolates Recovered From Carriers and Invasive Infections. | Joshua M Maher, Rodrigo E Mendes, Holly K Huynh, Eric A Porsch, Joseph W St Geme Iii, Pablo Yagupsky, John Bradley | The Pediatric Infectious Disease Journal | 2022-12-28 |
| Safety and microbiological activity of phage therapy in persons with cystic fibrosis colonized with Pseudomonas aeruginosa: study protocol for a phase 1b/2, multicenter, randomized, double-blind, placebo-controlled trial. | Pranita D Tamma, Maria Souli, Michael Billard, Joseph Campbell, Douglas Conrad, Damon W Ellison, Beth Evans, Scott R Evans, Kerryl E Greenwood-Quaintance, Andrey A Filippov, Holly S Geres, Toshimitsu Hamasaki, Lauren Komarow, Mikeljon P Nikolich, Thomas P Lodise, Seema U Nayak, Carmelle Norice-Tra, Robin Patel, David Pride, Janie Russell, Daria Van Tyne, Henry F Chambers, Vance G FowlerJr, Robert T Schooley, | Trials | 2022-12-28 |
| Quantifying (non)parallelism of gut microbial community change using multivariate vector analysis. | Andreas Härer, Diana J Rennison | Ecology And Evolution | 2022-12-28 |
| Predicting stress response and improved protein overproduction in Bacillus subtilis. | Juan D Tibocha-Bonilla, Cristal Zuñiga, Asama Lekbua, Colton Lloyd, Kevin Rychel, Katie Short, Karsten Zengler | NPJ Systems Biology And Applications | 2022-12-27 |
| The RISE FOR HEALTH study: Methods for in-person assessment and biospecimen collection. | Linda Brubaker, Julia Barthold, Colleen M Fitzgerald, Kimberly Kenton, Cora E Lewis, Jerry Lowder, Emily S Lukacz, Alayne Markland, Melanie Meister, Janis Miller, Elizabeth R Mueller, Kyle Rudser, Ariana L Smith, Diane K Newman, | Neurourology And Urodynamics | 2022-12-27 |
| Minireview: Engineering evolution to reconfigure phenotypic traits in microbes for biotechnological applications. | Kangsan Kim, Minjeong Kang, Sang-Hyeok Cho, Eojin Yoo, Ui-Gi Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | Computational And Structural Biotechnology Journal | 2022-12-24 |
| Association between inflammation, reward processing, and ibuprofen-induced increases of miR-23b in astrocyte-enriched extracellular vesicles: A randomized, placebo-controlled, double-blind, exploratory trial in healthy individuals. | Kaiping Burrows, Leandra K Figueroa-Hall, Ahlam M Alarbi, Jennifer L Stewart, Rayus Kuplicki, Chibing Tan, Bethany N Hannafon, Rajagopal Ramesh, Jonathan Savitz, Sahib Khalsa, T Kent Teague, Victoria B Risbrough, Martin P Paulus | Brain, Behavior, & Immunity - Health | 2022-12-24 |
| SARS-CoV-2 spike conformation determines plasma neutralizing activity elicited by a wide panel of human vaccines. | John E Bowen, Young-Jun Park, Cameron Stewart, Jack T Brown, William K Sharkey, Alexandra C Walls, Anshu Joshi, Kaitlin R Sprouse, Matthew McCallum, M Alejandra Tortorici, Nicholas M Franko, Jennifer K Logue, Ignacio G Mazzitelli, Annalee W Nguyen, Rui P Silva, Yimin Huang, Jun Siong Low, Josipa Jerak, Sasha W Tiles, Kumail Ahmed, Asefa Shariq, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Gyorgy Snell, Christine M Posavad, Najeeha Talat Iqbal, Jorge Geffner, Alessandra Bandera, Andrea Gori, Federica Sallusto, Jennifer A Maynard, Shane Crotty, Wesley C Van Voorhis, Carlos Simmerling, Renata Grifantini, Helen Y Chu, Davide Corti, David Veesler | Science Immunology | 2022-12-23 |
| Healthy dietary patterns are associated with the gut microbiome in the Hispanic Community Health Study/Study of Latinos. | Brandilyn A Peters, Jiaqian Xing, Guo-Chong Chen, Mykhaylo Usyk, Zheng Wang, Amanda C McClain, Bharat Thyagarajan, Martha L Daviglus, Daniela Sotres-Alvarez, Frank B Hu, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi | The American Journal Of Clinical Nutrition | 2022-12-22 |
| S. aureus drives itch and scratch-induced skin damage through a V8 protease-PAR1 axis. | Liwen Deng, Flavia Costa, Kimbria J Blake, Samantha Choi, Arundhasa Chandrabalan, Muhammad Saad Yousuf, Stephanie Shiers, Daniel Dubreuil, Daniela Vega-Mendoza, Corinne Rolland, Celine Deraison, Tiphaine Voisin, Michelle D Bagood, Lucia Wesemann, Abigail M Frey, Joseph S Palumbo, Brian J Wainger, Richard L Gallo, Juan-Manuel Leyva-Castillo, Nathalie Vergnolle, Theodore J Price, Rithwik Ramachandran, Alexander R Horswill, Isaac M Chiu | Cell | 2022-12-22 |
| Outer Membrane Vesicle-Coated Nanoparticle Vaccine Protects Against Pneumonia and Sepsis. | Elisabet Bjanes, Jiarong Zhou, Tariq Qayum, Nishta Krishnan, Raymond H Zurich, Nitasha D Menon, Alexandria Hoffman, Ronnie H Fang, Liangfang Zhang, Victor Nizet | Advanced Nanobiomed Research | 2022-12-22 |
| Bamlanivimab therapy for acute COVID-19 does not blunt SARS-CoV-2-specific memory T cell responses. | Sydney I Ramirez, Alba Grifoni, Daniela Weiskopf, Urvi M Parikh, Amy Heaps, Farhoud Faraji, Scott F Sieg, Justin Ritz, Carlee Moser, Joseph J Eron, Judith S Currier, Paul Klekotka, Alessandro Sette, David A Wohl, Eric S Daar, Michael D Hughes, Kara W Chew, Davey M Smith, Shane Crotty, | JCI Insight | 2022-12-22 |
| Fungal infections and the fungal microbiome in hepatobiliary disorders. | Phillipp Hartmann, Bernd Schnabl | Journal Of Hepatology | 2022-12-21 |
| The Chromatin Regulator Mll1 Supports T Follicular Helper Cell Differentiation by Controlling Expression of Bcl6, LEF-1, and TCF-1. | Simon Bélanger, Sonya Haupt, Caterina E Faliti, Adam Getzler, Jinyong Choi, Huitian Diao, Pabalu P Karunadharma, Nicholas A Bild, Matthew E Pipkin, Shane Crotty | Journal Of Immunology (Baltimore, Md. : 1950) | 2022-12-20 |
| Conservation of Nematocida microsporidia gene expression and host response in Caenorhabditis nematodes. | Yin Chen Wan, Emily R Troemel, Aaron W Reinke | PloS One | 2022-12-19 |
| ConCISE: Consensus Annotation Propagation of Ion Features in Untargeted Tandem Mass Spectrometry Combining Molecular Networking and Metabolite Structure Prediction. | Zachary A Quinlan, Irina Koester, Allegra T Aron, Daniel Petras, Lihini I Aluwihare, Pieter C Dorrestein, Craig E Nelson, Linda Wegley Kelly | Metabolites | 2022-12-16 |
| Peptide Amphiphile Mediated Co-assembly for Nanoplasmonic Sensing. | Zhicheng Jin, Yi Li, Ke Li, Jiajing Zhou, Justin Yeung, Chuxuan Ling, Wonjun Yim, Tengyu He, Yong Cheng, Ming Xu, Matthew N Creyer, Yu-Ci Chang, Pavla Fajtová, Maurice Retout, Baiyan Qi, Shuzhou Li, Anthony J O'Donoghue, Jesse V Jokerst | Angewandte Chemie (International Ed. In English) | 2022-12-15 |
| Exploring the value of a global gene drive project registry. | Riley I Taitingfong, Cynthia Triplett, Váleri N Vásquez, Ramya M Rajagopalan, Robyn Raban, Aaron Roberts, Gerard Terradas, Bridget Baumgartner, Claudia Emerson, Fred Gould, Fredros Okumu, Cynthia E Schairer, Hervé C Bossin, Leah Buchman, Karl J Campbell, Anna Clark, Jason Delborne, Kevin Esvelt, Joshua Fisher, Robert M Friedman, Gigi Gronvall, Nikos Gurfield, Elizabeth Heitman, Natalie Kofler, Todd Kuiken, Jennifer Kuzma, Pablo Manrique-Saide, John M Marshall, Michael Montague, Amy C Morrison, Chris C Opesen, Ryan Phelan, Antoinette Piaggio, Hector Quemada, Larisa Rudenko, Natéwindé Sawadogo, Robert Smith, Holly Tuten, Anika Ullah, Adam Vorsino, Nikolai Windbichler, Omar S Akbari, Kanya Long, James V Lavery, Sam Weiss Evans, Karen Tountas, Cinnamon S Bloss | Nature Biotechnology | 2022-12-15 |
| Deep Dive into the Long Haul: Analysis of Symptom Clusters and Risk Factors for Post-Acute Sequelae of COVID-19 to Inform Clinical Care. | Nicole H Goldhaber, Jordan N Kohn, William Scott Ogan, Amy Sitapati, Christopher A Longhurst, Angela Wang, Susan Lee, Suzi Hong, Lucy E Horton | International Journal Of Environmental Research And Public Health | 2022-12-15 |
| Potentially probiotic Limosilactobacillus reuteri from human milk strengthens the gut barrier in T84 cells and a murine enteroid model. | Jasia Anjum, Andrew Quach, Preedajit Wongkrasant, Shahid Nazir, Muhammad Tariq, Kim E Barrett, Arsalan Zaidi | Journal Of Applied Microbiology | 2022-12-14 |
| Concurrent validity and reliability of at-home teleneuropsychological evaluations among people with and without HIV. | Maulika Kohli, Arin Fisher, Ni Sun-Suslow, Anne Heaton, Matthew S Dawson, Jennifer Marquie, Donald R Franklin, Maria Marquine, Jennifer E Iudicello, Robert K Heaton, David J Moore | Journal Of The International Neuropsychological Society : JINS | 2022-12-13 |
| Stool multi-omics for the study of host-microbe interactions in inflammatory bowel disease. | Consuelo Sauceda, Charlie Bayne, Khadijeh Sudqi, Antonio Gonzalez, Parambir S Dulai, Rob Knight, David J Gonzalez, Carlos G Gonzalez | Gut Microbes | 2022-12-12 |
| Revealing Causes for False-Positive and False-Negative Calling of Gene Essentiality in Escherichia coli Using Transposon Insertion Sequencing. | Donghui Choe, Uigi Kim, Soonkyu Hwang, Sang Woo Seo, Donghyuk Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | MSystems | 2022-12-12 |
| Comparison of bacterial suppression by phage cocktails, dual-receptor generalists, and coevolutionarily trained phages. | Joshua M Borin, Justin J Lee, Krista R Gerbino, Justin R Meyer | Evolutionary Applications | 2022-12-09 |
| Host-microbiome interactions in the holobiome of Atopic Dermatitis. | Elise Burger, Richard Gallo | The Journal Of Allergy And Clinical Immunology | 2022-12-09 |
| Effects of Variation in Urine Sample Storage Conditions on 16S Urogenital Microbiome Analyses. | Tanya Kumar, MacKenzie Bryant, Kalen Cantrell, Se Jin Song, Daniel McDonald, Helena M Tubb, Sawyer Farmer, Emily S Lukacz, Linda Brubaker, Rob Knight | MSystems | 2022-12-08 |
| Breathing and Tilting: Mesoscale Simulations Illuminate Influenza Glycoprotein Vulnerabilities. | Lorenzo Casalino, Christian Seitz, Julia Lederhofer, Yaroslav Tsybovsky, Ian A Wilson, Masaru Kanekiyo, Rommie E Amaro | ACS Central Science | 2022-12-08 |
| A Reproducible and Tunable Synthetic Soil Microbial Community Provides New Insights into Microbial Ecology. | Joanna Coker, Kateryna Zhalnina, Clarisse Marotz, Deepan Thiruppathy, Megan Tjuanta, Gavin D'Elia, Rodas Hailu, Talon Mahosky, Meagan Rowan, Trent R Northen, Karsten Zengler | MSystems | 2022-12-06 |
| Multicenter Evaluation of the Cepheid Xpert GBS LB XC Test. | Phyu M Thwe, Matthew L Faron, David T Pride, Amorina Cruz, Derek Gerstbrein, Karen A Nahmod, Lindsay Bigham, Xiaotang Du, Xixi Lu, Stephanie Moya, Ping Ren | Journal Of Clinical Microbiology | 2022-12-06 |
| Vaccination induces HIV broadly neutralizing antibody precursors in humans. | David J Leggat, Kristen W Cohen, Jordan R Willis, William J Fulp, Allan C deCamp, Oleksandr Kalyuzhniy, Christopher A Cottrell, Sergey Menis, Greg Finak, Lamar Ballweber-Fleming, Abhinaya Srikanth, Jason R Plyler, Torben Schiffner, Alessia Liguori, Farhad Rahaman, Angela Lombardo, Vincent Philiponis, Rachael E Whaley, Aaron Seese, Joshua Brand, Alexis M Ruppel, Wesley Hoyland, Nicole L Yates, LaTonya D Williams, Kelli Greene, Hongmei Gao, Celia R Mahoney, Martin M Corcoran, Alberto Cagigi, Alison Taylor, David M Brown, David R Ambrozak, Troy Sincomb, Xiaozhen Hu, Ryan Tingle, Erik Georgeson, Saman Eskandarzadeh, Nushin Alavi, Danny Lu, Tina-Marie Mullen, Michael Kubitz, Bettina Groschel, Janine Maenza, Orpheus Kolokythas, Nadia Khati, Jeffrey Bethony, Shane Crotty, Mario Roederer, Gunilla B Karlsson Hedestam, Georgia D Tomaras, David Montefiori, David Diemert, Richard A Koup, Dagna S Laufer, M Juliana McElrath, Adrian B McDermott, William R Schief | Science (New York, N.Y.) | 2022-12-02 |
| Plant and fungal species interactions differ between aboveground and belowground habitats in mountain forests of eastern China. | Teng Yang, Leho Tedersoo, Pamela S Soltis, Douglas E Soltis, Miao Sun, Yuying Ma, Yingying Ni, Xu Liu, Xiao Fu, Yu Shi, Han-Yang Lin, Yun-Peng Zhao, Chengxin Fu, Chuan-Chao Dai, Jack A Gilbert, Haiyan Chu | Science China. Life Sciences | 2022-12-01 |
| Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2022 Recommendations of the International Antiviral Society-USA Panel. | Rajesh T Gandhi, Roger Bedimo, Jennifer F Hoy, Raphael J Landovitz, Davey M Smith, Ellen F Eaton, Clara Lehmann, Sandra A Springer, Paul E Sax, Melanie A Thompson, Constance A Benson, Susan P Buchbinder, Carlos Del Rio, Joseph J Eron, Huldrych F Günthard, Jean-Michel Molina, Donna M Jacobsen, Michael S Saag | JAMA | 2022-12-01 |
| A self-powered ingestible wireless biosensing system for real-time in situ monitoring of gastrointestinal tract metabolites. | Ernesto De la Paz, Nikhil Harsha Maganti, Alexander Trifonov, Itthipon Jeerapan, Kuldeep Mahato, Lu Yin, Thitaporn Sonsa-Ard, Nicolas Ma, Won Jung, Ryan Burns, Amir Zarrinpar, Joseph Wang, Patrick P Mercier | Nature Communications | 2022-12-01 |
| A high-protein diet prevents weight regain. | Amir Zarrinpar | Nature Metabolism | 2022-12-01 |
| ChiMera: an easy to use pipeline for bacterial genome based metabolic network reconstruction, evaluation and visualization. | Gustavo Tamasco, Manish Kumar, Karsten Zengler, Rafael Silva-Rocha, Ricardo Roberto da Silva | BMC Bioinformatics | 2022-11-30 |
| Clinical Outcomes of Omicron Variant (B.1.1.529) Infection in Children and Adolescents Hospitalized With COVID-19 in Brazil With Observational Data on the Efficacy of the Vaccines in Adolescents. | Eduardo A Oliveira, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Ludmila R Silva, Daniella B Martelli, Clara C Pinhati, Hercílio Martelli-Júnior | The Pediatric Infectious Disease Journal | 2022-11-29 |
| Temporal Improvements in COVID-19 Outcomes for Hospitalized Adults: A Post Hoc Observational Study of Remdesivir Group Participants in the Adaptive COVID-19 Treatment Trial. | Gail E Potter, Tyler Bonnett, Kevin Rubenstein, David A Lindholm, Rekha R Rapaka, Sarah B Doernberg, David C Lye, Richard A Mularski, Noreen A Hynes, Susan Kline, Catharine I Paules, Cameron R Wolfe, Maria G Frank, Nadine G Rouphael, Gregory A Deye, Daniel A Sweeney, Rhonda E Colombo, Richard T Davey, Aneesh K Mehta, Jennifer A Whitaker, Jose G Castro, Alpesh N Amin, Christopher J Colombo, Corri B Levine, Mamta K Jain, Ryan C Maves, Vincent C Marconi, Robert Grossberg, Sameh Hozayen, Timothy H Burgess, Robert L Atmar, Anuradha Ganesan, Carlos A Gomez, Constance A Benson, Diego Lopez de Castilla, Neera Ahuja, Sarah L George, Seema U Nayak, Stuart H Cohen, Tahaniyat Lalani, William R Short, Nathaniel Erdmann, Kay M Tomashek, Pablo Tebas | Annals Of Internal Medicine | 2022-11-29 |
| Culture-Independent Detection and Identification of Serovars. | Michael A Matthias, Aristea A Lubar, Shalka S Lanka Acharige, Kira L Chaiboonma, Nicholas N Pilau, Alan S Marroquin, Dinesha Jayasundara, Suneth Agampodi, Joseph M Vinetz | Microbiology Spectrum | 2022-11-29 |
| The human pathobiont secreted protease Mfsap1 regulates cell dispersal and exacerbates skin inflammation. | Joleen P Z Goh, Fiorella Ruchti, Si En Poh, Winston L C Koh, Kiat Yi Tan, Yan Ting Lim, Steven T G Thng, Radoslaw M Sobota, Shawn S Hoon, Chenxi Liu, Anthony J O'Donoghue, Salomé LeibundGut-Landmann, Hazel H Oon, Hao Li, Thomas L Dawson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-11-29 |
| Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity. | Justin P Shaffer, Louis-Félix Nothias, Luke R Thompson, Jon G Sanders, Rodolfo A Salido, Sneha P Couvillion, Asker D Brejnrod, Franck Lejzerowicz, Niina Haiminen, Shi Huang, Holly L Lutz, Qiyun Zhu, Cameron Martino, James T Morton, Smruthi Karthikeyan, Mélissa Nothias-Esposito, Kai Dührkop, Sebastian Böcker, Hyun Woo Kim, Alexander A Aksenov, Wout Bittremieux, Jeremiah J Minich, Clarisse Marotz, MacKenzie M Bryant, Karenina Sanders, Tara Schwartz, Greg Humphrey, Yoshiki Vásquez-Baeza, Anupriya Tripathi, Laxmi Parida, Anna Paola Carrieri, Kristen L Beck, Promi Das, Antonio González, Daniel McDonald, Joshua Ladau, Søren M Karst, Mads Albertsen, Gail Ackermann, Jeff DeReus, Torsten Thomas, Daniel Petras, Ashley Shade, James Stegen, Se Jin Song, Thomas O Metz, Austin D Swafford, Pieter C Dorrestein, Janet K Jansson, Jack A Gilbert, Rob Knight, | Nature Microbiology | 2022-11-28 |
| Representative oral microbiome data for the US population: the National Health and Nutrition Examination Survey. | Emily Vogtmann, Anil K Chaturvedi, Martin J Blaser, Nicholas A Bokulich, J Gregory Caporaso, Maura L Gillison, Xing Hua, Autumn G Hullings, Rob Knight, Vaishnavi Purandare, Jianxin Shi, Yunhu Wan, Neal D Freedman, Christian C Abnet | The Lancet. Microbe | 2022-11-28 |
| Characterization of SARS-CoV-2 antibodies in human milk from 21 women with confirmed COVID-19 infection. | Lars Bode, Kerri Bertrand, Julia A Najera, Annalee Furst, Gordon Honerkamp-Smith, Adam D Shandling, Christina D Chambers, David Camerini, Joseph J Campo | Pediatric Research | 2022-11-25 |
| Species Capable of Growth at Pressures Ranging Over 5 Orders of Magnitude, from the Surface of Mars (10 Pa) to Deep Oceans (10 Pa) in the Solar System. | Kathleen M Miller, Flora Tang, Sixuan Li, Kelli K Mullane, Brontë R Shelton, Lam Bui, Douglas H Bartlett, Wayne L Nicholson | Astrobiology | 2022-11-24 |
| Urobiome changes differ based on OAB treatment in adult females. | Thomas Halverson, Elizabeth R Mueller, Linda Brubaker, Alan J Wolfe | International Urogynecology Journal | 2022-11-24 |
| The association between pre-existing asthma and reduced risk of death among children and adolescents hospitalized with COVID-19 in Brazil. | Maria C L Oliveira, Enrico A Colosimo, Mariana A Vasconcelos, Hercílio Martelli-Júnior, Robert H Mak, Ludmila R Silva, Clara C Pinhati, Ana C Simões E Silva, Eduardo A Oliveira | Pediatric Pulmonology | 2022-11-23 |
| Analyzing rare mutations in metagenomes assembled using long and accurate reads. | Marcus W Fedarko, Mikhail Kolmogorov, Pavel A Pevzner | Genome Research | 2022-11-23 |
| Composition and metabolic potential of microbiomes associated with mesopelagic animals from Monterey Canyon. | Corinna Breusing, Karen J Osborn, Peter R Girguis, Aspen T Reese | ISME Communications | 2022-11-22 |
| Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species. | Jeremiah J Minich, Andreas Härer, Joseph Vechinski, Benjamin W Frable, Zachary R Skelton, Emily Kunselman, Michael A Shane, Daniela S Perry, Antonio Gonzalez, Daniel McDonald, Rob Knight, Todd P Michael, Eric E Allen | Nature Communications | 2022-11-17 |
| NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters. | Tiago F Leão, Mingxun Wang, Ricardo da Silva, Alexey Gurevich, Anelize Bauermeister, Paulo Wender P Gomes, Asker Brejnrod, Evgenia Glukhov, Allegra T Aron, Joris J R Louwen, Hyun Woo Kim, Raphael Reher, Marli F Fiore, Justin J J van der Hooft, Lena Gerwick, William H Gerwick, Nuno Bandeira, Pieter C Dorrestein | PNAS Nexus | 2022-11-16 |
| Targeting keystone species helps restore the dysbiosis of butyrate-producing bacteria in nonalcoholic fatty liver disease. | Dingfeng Wu, Lei Liu, Na Jiao, Yida Zhang, Li Yang, Chuan Tian, Ping Lan, Lixin Zhu, Rohit Loomba, Ruixin Zhu | IMeta | 2022-11-16 |
| On the illusion of auxotrophy: met15Δ yeast cells can grow on inorganic sulfur, thanks to the previously uncharacterized homocysteine synthase Yll058w. | S Branden Van Oss, Saurin Bipin Parikh, Nelson Castilho Coelho, Aaron Wacholder, Ivan Belashov, Sara Zdancewicz, Manuel Michaca, Jiazhen Xu, Yun Pyo Kang, Nathan P Ward, Sang Jun Yoon, Katherine M McCourt, Jake McKee, Trey Ideker, Andrew P VanDemark, Gina M DeNicola, Anne-Ruxandra Carvunis | The Journal Of Biological Chemistry | 2022-11-13 |
| Correlation between Serum Steroid Hormones and Gut Microbiota in Patients with Alcohol-Associated Liver Disease. | Bei Gao, Yixin Zhu, Weishou Shen, Peter Stärkel, Bernd Schnabl | Metabolites | 2022-11-13 |
| A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice. | Reem Abdel-Haq, Johannes C M Schlachetzki, Joseph C Boktor, Thaisa M Cantu-Jungles, Taren Thron, Mengying Zhang, John W Bostick, Tahmineh Khazaei, Sujatha Chilakala, Livia H Morais, Greg Humphrey, Ali Keshavarzian, Jonathan E Katz, Matthew Thomson, Rob Knight, Viviana Gradinaru, Bruce R Hamaker, Christopher K Glass, Sarkis K Mazmanian | ELife | 2022-11-08 |
| Spacer Matters: All-Peptide-Based Ligand for Promoting Interfacial Proteolysis and Plasmonic Coupling. | Zhicheng Jin, Chuxuan Ling, Yi Li, Jiajing Zhou, Ke Li, Wonjun Yim, Justin Yeung, Yu-Ci Chang, Tengyu He, Yong Cheng, Pavla Fajtová, Maurice Retout, Anthony J O'Donoghue, Jesse V Jokerst | Nano Letters | 2022-11-08 |
| RISE FOR HEALTH: Rationale and protocol for a prospective cohort study of bladder health in women. | Ariana L Smith, Kyle Rudser, Bernard L Harlow, Gerald McGwin, Julia Barthold, Sonya S Brady, Linda Brubaker, Shayna D Cunningham, James W Griffith, Kim Kenton, Heather Klusaritz, Cora E Lewis, Emily S Lukacz, Julia Maki, Alayne D Markland, Elizabeth R Mueller, Diane K Newman, Jesse Nodora, Leslie M Rickey, Todd Rockwood, Melissa Simon, Jean F Wyman, Siobhan Sutcliffe, | Neurourology And Urodynamics | 2022-11-02 |
| Mucosal and Systemic Responses to Severe Acute Respiratory Syndrome Coronavirus 2 Vaccination Determined by Severity of Primary Infection. | Mohammad M Sajadi, Amber Myers, James Logue, Saman Saadat, Narjes Shokatpour, James Quinn, Michelle Newman, Meagan Deming, Zahra Rikhtegaran Tehrani, Laurence S Magder, Maryam Karimi, Abdolrahim Abbasi, Mike Shlyak, Lauren Baracco, Matthew B Frieman, Shane Crotty, Anthony D Harris | MSphere | 2022-11-02 |
| Coordination of CcpA and CodY Regulators in Staphylococcus aureus USA300 Strains. | Saugat Poudel, Ying Hefner, Richard Szubin, Anand Sastry, Ye Gao, Victor Nizet, Bernhard O Palsson | MSystems | 2022-11-02 |
| Pan-Genome Analysis of Transcriptional Regulation in Six Salmonella enterica Serovar Typhimurium Strains Reveals Their Different Regulatory Structures. | Yuan Yuan, Yara Seif, Kevin Rychel, Reo Yoo, Siddharth Chauhan, Saugat Poudel, Tahani Al-Bulushi, Bernhard O Palsson, Anand V Sastry | MSystems | 2022-11-01 |
| synDNA-a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing. | Livia S Zaramela, Megan Tjuanta, Oriane Moyne, Maxwell Neal, Karsten Zengler | MSystems | 2022-11-01 |
| Sex, puberty, and the gut microbiome. | Laura Sisk-Hackworth, Scott T Kelley, Varykina G Thackray | Reproduction (Cambridge, England) | 2022-11-01 |
| Drug transporters OAT1 and OAT3 have specific effects on multiple organs and gut microbiome as revealed by contextualized metabolic network reconstructions. | Neema Jamshidi, Sanjay K Nigam | Scientific Reports | 2022-10-31 |
| The rapidly evolving monkeypox epidemic: A call to action to leave no one behind. | Steffanie A Strathdee, Davey M Smith, Megan Halbrook, Placide Mbala-Kingebeni, Shira Abeles, Francesca Torriani, Anne Rimoin | PLoS Medicine | 2022-10-31 |
| Sarcopenia-related gut microbial changes are associated with the risk of complications in people with cirrhosis. | Pei-Chang Lee, Kuei-Chuan Lee, Tsung-Chieh Yang, Hsiao-Sheng Lu, Tsung-Yi Cheng, Yu-Jen Chen, Jen-Jie Chiou, Chi-Wei Huang, Ueng-Cheng Yang, Elise Chia-Hui Tan, Shih-Hsuan Chou, Yu-Lun Kuo, Bernd Schnabl, Yi-Hsiang Huang, Ming-Chih Hou | JHEP Reports : Innovation In Hepatology | 2022-10-29 |
| Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq. | Sara E Vazquez, Sabrina A Mann, Aaron Bodansky, Andrew F Kung, Zoe Quandt, Elise M N Ferré, Nils Landegren, Daniel Eriksson, Paul Bastard, Shen-Ying Zhang, Jamin Liu, Anthea Mitchell, Irina Proekt, David Yu, Caleigh Mandel-Brehm, Chung-Yu Wang, Brenda Miao, Gavin Sowa, Kelsey Zorn, Alice Y Chan, Veronica M Tagi, Chisato Shimizu, Adriana Tremoulet, Kara Lynch, Michael R Wilson, Olle Kämpe, Kerry Dobbs, Ottavia M Delmonte, Rosa Bacchetta, Luigi D Notarangelo, Jane C Burns, Jean-Laurent Casanova, Michail S Lionakis, Troy R Torgerson, Mark S Anderson, Joseph L DeRisi | ELife | 2022-10-27 |
| The Vi Capsular Polysaccharide of Salmonella Typhi Promotes Macrophage Phagocytosis by Binding the Human C-Type Lectin DC-SIGN. | Lillian F Zhang, Bernd Lepenies, Sayuri Nakamae, Briana M Young, Renato L Santos, Manuela Raffatellu, Brian A Cobb, Hirotaka Hiyoshi, Andreas J Bäumler | MBio | 2022-10-26 |
| Emergence of SARS-CoV-2 escape mutations during Bamlanivimab therapy in a phase II randomized clinical trial. | Manish C Choudhary, Kara W Chew, Rinki Deo, James P Flynn, James Regan, Charles R Crain, Carlee Moser, Michael D Hughes, Justin Ritz, Ruy M Ribeiro, Ruian Ke, Joan A Dragavon, Arzhang Cyrus Javan, Ajay Nirula, Paul Klekotka, Alexander L Greninger, Courtney V Fletcher, Eric S Daar, David A Wohl, Joseph J Eron, Judith S Currier, Urvi M Parikh, Scott F Sieg, Alan S Perelson, Robert W Coombs, Davey M Smith, Jonathan Z Li, | Nature Microbiology | 2022-10-26 |
| Live Biotherapeutic Products as Cancer Treatments. | Arianna Brevi, Amir Zarrinpar | Cancer Research | 2022-10-24 |
| Abrogation of neutrophil inflammatory pathways and potential reduction of neutrophil-related factors in COVID-19 by intravenous immunoglobulin. | Jorge Adrian Masso-Silva, George Sakoulas, Jarod Olay, Victoria Groysberg, Matthew Geriak, Victor Nizet, Laura E Crotty Alexander, Angela Meier | Frontiers In Immunology | 2022-10-20 |
| Lessons for Understanding Central Nervous System HIV Reservoirs from the Last Gift Program. | Patricia K Riggs, Antoine Chaillon, Guochun Jiang, Scott L Letendre, Yuyang Tang, Jeff Taylor, Andrew Kaytes, Davey M Smith, Karine Dubé, Sara Gianella | Current HIV/AIDS Reports | 2022-10-19 |
| Anthrax Meningoencephalitis and Intracranial Hemorrhage. | Nicholas Caffes, Katherine Hendricks, John S Bradley, Nancy A Twenhafel, J Marc Simard | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-10-17 |
| Systematic Review of Hospital Treatment Outcomes for Naturally Acquired and Bioterrorism-Related Anthrax, 1880-2018. | Marissa K Person, Rachel Cook, John S Bradley, Nathaniel Hupert, William A Bower, Katherine Hendricks | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-10-17 |
| Inexpensive, Accurate, and Stable Method to Quantitate Blood Alanine Aminotransferase (ALT) Levels. | Phillipp Hartmann, Bernd Schnabl | Methods And Protocols | 2022-10-14 |
| Experimental Evolution Reveals Unifying Systems-Level Adaptations but Diversity in Driving Genotypes. | Erol S Kavvas, Christopher P Long, Anand Sastry, Saugat Poudel, Maciek R Antoniewicz, Yang Ding, Elsayed T Mohamed, Richard Szubin, Jonathan M Monk, Adam M Feist, Bernhard O Palsson | MSystems | 2022-10-13 |
| Illuminating the dark metabolome of Pseudo-nitzschia-microbiome associations. | Irina Koester, Zachary A Quinlan, Louis-Félix Nothias, Margot E White, Ariel Rabines, Daniel Petras, John K Brunson, Kai Dührkop, Marcus Ludwig, Sebastian Böcker, Farooq Azam, Andrew E Allen, Pieter C Dorrestein, Lihini I Aluwihare | Environmental Microbiology | 2022-10-12 |
| Allergen Content and Protease Activity in Milk Feeds from Mothers of Preterm Infants. | Kathleen Luskin, Diba Mortazavi, Sherry Bai-Tong, Kerri Bertrand, Christina Chambers, Keriann Schulkers-Escalante, Alla Ahmad, Stephanie Luedtke, Anthony J O'Donoghue, Majid Ghassemian, Bob Geng, Sandra L Leibel, Sydney A Leibel | Breastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine | 2022-10-12 |
| Transcriptomic profiling of sporadic Alzheimer's disease patients. | Andrew B Caldwell, Balaji G Anantharaman, Srinivasan Ramachandran, Phuong Nguyen, Qing Liu, Ivy Trinh, Douglas R Galasko, Paula A Desplats, Steven L Wagner, Shankar Subramaniam | Molecular Brain | 2022-10-12 |
| OAT, OATP, and MRP Drug Transporters and the Remote Sensing and Signaling Theory. | Sanjay K Nigam, Jeffry C Granados | Annual Review Of Pharmacology And Toxicology | 2022-10-07 |
| Regulatory T-cells and GARP expression are decreased in exercise-associated chikungunya viral arthritis flares. | John E Dobbs, Sarah R Tritsch, Liliana Encinales, Andres Cadena, Karol Suchowiecki, Gary Simon, Christopher Mores, Silvana Insignares, Vierys Patricia Villamil Orozco, Mirna Ospino, Lil Avendano Echavez, Carlos Andres Herrera Gomez, Yerlenis Galvis Crespo, Richard Amdur, Alberto David Cabana Jimenez, Carlos Alberto Perez Hernandez, Jennifer Carolina Martinez Zapata, Alfonso Sucerquia Hernandez, Paula Bruges Silvera, Wendy Rosales, Evelyn Mendoza, Estefanie Osorio-Llanes, Jairo Castellar, Dennys Jimenez, Dan M Cooper, Gary S Firestein, Karen Martins, Aileen Y Chang | Frontiers In Immunology | 2022-10-07 |
| Electrochemical potential enables dormant spores to integrate environmental signals. | Kaito Kikuchi, Leticia Galera-Laporta, Colleen Weatherwax, Jamie Y Lam, Eun Chae Moon, Emmanuel A Theodorakis, Jordi Garcia-Ojalvo, Gürol M Süel | Science (New York, N.Y.) | 2022-10-06 |
| Opposing roles of hepatic stellate cell subpopulations in hepatocarcinogenesis. | Aveline Filliol, Yoshinobu Saito, Ajay Nair, Dianne H Dapito, Le-Xing Yu, Aashreya Ravichandra, Sonakshi Bhattacharjee, Silvia Affo, Naoto Fujiwara, Hua Su, Qiuyan Sun, Thomas M Savage, John R Wilson-Kanamori, Jorge M Caviglia, LiKang Chin, Dongning Chen, Xiaobo Wang, Stefano Caruso, Jin Ku Kang, Amit Dipak Amin, Sebastian Wallace, Ross Dobie, Deqi Yin, Oscar M Rodriguez-Fiallos, Chuan Yin, Adam Mehal, Benjamin Izar, Richard A Friedman, Rebecca G Wells, Utpal B Pajvani, Yujin Hoshida, Helen E Remotti, Nicholas Arpaia, Jessica Zucman-Rossi, Michael Karin, Neil C Henderson, Ira Tabas, Robert F Schwabe | Nature | 2022-10-05 |
| AHR is a master regulator of diverse pathways in endogenous metabolism. | Jeffry C Granados, Kian Falah, Imhoi Koo, Ethan W Morgan, Gary H Perdew, Andrew D Patterson, Neema Jamshidi, Sanjay K Nigam | Scientific Reports | 2022-10-05 |
| Age-dependent aggregation of ribosomal RNA-binding proteins links deterioration in chromatin stability with challenges to proteostasis. | Julie Paxman, Zhen Zhou, Richard O'Laughlin, Yuting Liu, Yang Li, Wanying Tian, Hetian Su, Yanfei Jiang, Shayna E Holness, Elizabeth Stasiowski, Lev S Tsimring, Lorraine Pillus, Jeff Hasty, Nan Hao | ELife | 2022-10-04 |
| A pals-25 gain-of-function allele triggers systemic resistance against natural pathogens of C. elegans. | Spencer S Gang, Manish Grover, Kirthi C Reddy, Deevya Raman, Ya-Ting Chang, Damian C Ekiert, Michalis Barkoulas, Emily R Troemel | PLoS Genetics | 2022-10-03 |
| #COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. | Abigail Dommer, Lorenzo Casalino, Fiona Kearns, Mia Rosenfeld, Nicholas Wauer, Surl-Hee Ahn, John Russo, Sofia Oliveira, Clare Morris, Anthony Bogetti, Anda Trifan, Alexander Brace, Terra Sztain, Austin Clyde, Heng Ma, Chakra Chennubhotla, Hyungro Lee, Matteo Turilli, Syma Khalid, Teresa Tamayo-Mendoza, Matthew Welborn, Anders Christensen, Daniel Ga Smith, Zhuoran Qiao, Sai K Sirumalla, Michael O'Connor, Frederick Manby, Anima Anandkumar, David Hardy, James Phillips, Abraham Stern, Josh Romero, David Clark, Mitchell Dorrell, Tom Maiden, Lei Huang, John McCalpin, Christopher Woods, Alan Gray, Matt Williams, Bryan Barker, Harinda Rajapaksha, Richard Pitts, Tom Gibbs, John Stone, Daniel M Zuckerman, Adrian J Mulholland, Thomas Miller, Shantenu Jha, Arvind Ramanathan, Lillian Chong, Rommie E Amaro | The International Journal Of High Performance Computing Applications | 2022-10-02 |
| Transfer of antibiotics and their metabolites in human milk: implications for infant health and microbiota. | Sydney P Thomas, Erce Denizer, Simone Zuffa, Brookie M Best, Lars Bode, Christina D Chambers, Pieter C Dorrestein, George Y Liu, Jeremiah D Momper, Victor Nizet, Shirley M Tsunoda, Adriana H Tremoulet | Pharmacotherapy | 2022-10-01 |
| Targeted protein S-nitrosylation of ACE2 inhibits SARS-CoV-2 infection. | Chang-Ki Oh, Tomohiro Nakamura, Nathan Beutler, Xu Zhang, Juan Piña-Crespo, Maria Talantova, Swagata Ghatak, Dorit Trudler, Lauren N Carnevale, Scott R McKercher, Malina A Bakowski, Jolene K Diedrich, Amanda J Roberts, Ashley K Woods, Victor Chi, Anil K Gupta, Mia A Rosenfeld, Fiona L Kearns, Lorenzo Casalino, Namir Shaabani, Hejun Liu, Ian A Wilson, Rommie E Amaro, Dennis R Burton, John R Yates, Cyrus Becker, Thomas F Rogers, Arnab K Chatterjee, Stuart A Lipton | Nature Chemical Biology | 2022-09-29 |
| A Trait-Based Approach to Predicting Viral Host-Range Evolvability. | Hannah M Strobel, Elizabeth C Stuart, Justin R Meyer | Annual Review Of Virology | 2022-09-29 |
| The gastrointestinal and microbiome impact of a resistant starch blend from potato, banana, and apple fibers: A randomized clinical trial using smart caps. | Douglas Hanes, Brent Nowinski, Joseph J Lamb, Ilona A Larson, Daniel McDonald, Rob Knight, Se Jin Song, Noelle Patno | Frontiers In Nutrition | 2022-09-29 |
| Organic Anion Transporters (OAT) and Other SLC22 Transporters in Progression of Renal Cell Carcinoma. | Thomas C Whisenant, Sanjay K Nigam | Cancers | 2022-09-29 |
| Vaccine Effectiveness against SARS-CoV-2 Variants in Adolescents from 15 to 90 Days after Second Dose: A Population-Based Test-Negative Case-Control Study. | Eduardo A Oliveira, Maria Christina L Oliveira, Enrico A Colosimo, Ana Cristina Simões E Silva, Robert H Mak, Mariana A Vasconcelos, Ludmila R Silva, Daniella B Martelli, Clara C Pinhati, Hercílio Martelli-Júnior | The Journal Of Pediatrics | 2022-09-29 |
| Evolution of the ancestral mammalian karyotype and syntenic regions. | Joana Damas, Marco Corbo, Jaebum Kim, Jason Turner-Maier, Marta Farré, Denis M Larkin, Oliver A Ryder, Cynthia Steiner, Marlys L Houck, Shaune Hall, Lily Shiue, Stephen Thomas, Thomas Swale, Mark Daly, Jonas Korlach, Marcela Uliano-Silva, Camila J Mazzoni, Bruce W Birren, Diane P Genereux, Jeremy Johnson, Kerstin Lindblad-Toh, Elinor K Karlsson, Martin T Nweeia, Rebecca N Johnson, , Harris A Lewin | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-09-26 |
| Asymptomatic or symptomatic SARS-CoV-2 infection plus vaccination confers increased adaptive immunity to variants of concern. | Peifang Sun, Irene Ramos, Camila H Coelho, Alba Grifoni, Corey A Balinsky, Sindhu Vangeti, Alison Tarke, Nathaniel I Bloom, Vihasi Jani, Silvia J Jakubski, David A Boulifard, Elizabeth Cooper, Carl W Goforth, Jan Marayag, Amethyst Marrone, Edgar Nunez, Lindsey White, Chad K Porter, Victor A Sugiharto, Megan Schilling, Avinash S Mahajan, Charmagne Beckett, Alessandro Sette, Stuart C Sealfon, Shane Crotty, Andrew G Letizia | IScience | 2022-09-23 |
| Nanoparticle-modified microrobots for in vivo antibiotic delivery to treat acute bacterial pneumonia. | Fangyu Zhang, Jia Zhuang, Zhengxing Li, Hua Gong, Berta Esteban-Fernández de Ávila, Yaou Duan, Qiangzhe Zhang, Jiarong Zhou, Lu Yin, Emil Karshalev, Weiwei Gao, Victor Nizet, Ronnie H Fang, Liangfang Zhang, Joseph Wang | Nature Materials | 2022-09-22 |
| Candida albicans-specific Th17 cell-mediated response contributes to alcohol-associated liver disease. | Suling Zeng, Elisa Rosati, Carina Saggau, Berith Messner, Huikuan Chu, Yi Duan, Phillipp Hartmann, Yanhan Wang, Shengyun Ma, Wendy Jia Men Huang, Jihyung Lee, Sung Min Lee, Raquel Carvalho-Gontijo, Vivian Zhang, Joseph P Hoffmann, Jay K Kolls, Eyal Raz, David A Brenner, Tatiana Kisseleva, Salomé LeibundGut-Landmann, Petra Bacher, Peter Stärkel, Bernd Schnabl | Cell Host & Microbe | 2022-09-22 |
| Long-primed germinal centres with enduring affinity maturation and clonal migration. | Jeong Hyun Lee, Henry J Sutton, Christopher A Cottrell, Ivy Phung, Gabriel Ozorowski, Leigh M Sewall, Rebecca Nedellec, Catherine Nakao, Murillo Silva, Sara T Richey, Jonathan L Torre, Wen-Hsin Lee, Erik Georgeson, Michael Kubitz, Sam Hodges, Tina-Marie Mullen, Yumiko Adachi, Kimberly M Cirelli, Amitinder Kaur, Carolina Allers, Marissa Fahlberg, Brooke F Grasperge, Jason P Dufour, Faith Schiro, Pyone P Aye, Oleksandr Kalyuzhniy, Alessia Liguori, Diane G Carnathan, Guido Silvestri, Xiaoying Shen, David C Montefiori, Ronald S Veazey, Andrew B Ward, Lars Hangartner, Dennis R Burton, Darrell J Irvine, William R Schief, Shane Crotty | Nature | 2022-09-21 |
| Actinopolymorphols E and F, pyrazine alkaloids from a marine sediment-derived bacterium Streptomyces sp. | Sohee Kim, Prima F Hillman, Ji Young Lee, Juri Lee, Jihye Lee, Sun-Shin Cha, Dong-Chan Oh, Sang-Jip Nam, William Fenical | The Journal Of Antibiotics | 2022-09-15 |
| Phase 2 Safety and Antiviral Activity of SAB-185, a Novel Polyclonal Antibody Therapy for Nonhospitalized Adults With COVID-19. | Babafemi O Taiwo, Kara W Chew, Carlee Moser, David Alain Wohl, Eric S Daar, Jonathan Z Li, Alexander L Greninger, Christoph Bausch, Thomas Luke, Keila Hoover, Gene Neytman, Mark J Giganti, Maxine Olefsky, Arzhang Cyrus Javan, Courtney V Fletcher, Joseph J Eron, Judith S Currier, Michael D Hughes, Davey M Smith, | The Journal Of Infectious Diseases | 2022-09-14 |
| Strengthening of enterococcal biofilms by Esp. | Lindsey Spiegelman, Adrian Bahn-Suh, Elizabeth T Montaño, Ling Zhang, Greg L Hura, Kathryn A Patras, Amit Kumar, F Akif Tezcan, Victor Nizet, Susan E Tsutakawa, Partho Ghosh | PLoS Pathogens | 2022-09-14 |
| The Transcription Factor YY-1 Is an Essential Regulator of T Follicular Helper Cell Differentiation. | Simon Bélanger, Sonya Haupt, Brian L Freeman, Adam J Getzler, Huitian Diao, Matthew E Pipkin, Shane Crotty | Journal Of Immunology (Baltimore, Md. : 1950) | 2022-09-12 |
| Siderophore Immunization Restricted Colonization of Adherent-Invasive Escherichia coli and Ameliorated Experimental Colitis. | Romana R Gerner, Suzana Hossain, Artur Sargun, Kareem Siada, Grant J Norton, Tengfei Zheng, Wilma Neumann, Sean-Paul Nuccio, Elizabeth M Nolan, Manuela Raffatellu | MBio | 2022-09-12 |
| Methods of DNA introduction for the engineering of commensal microbes. | Dake Liu, Nicole E Siguenza, Amir Zarrinpar, Yousong Ding | Engineering Microbiology | 2022-09-12 |
| Development of host immune response to bacteriophage in a lung transplant recipient on adjunctive phage therapy for a multidrug resistant pneumonia. | Jennifer M Dan, Susan M Lehman, Rita Al-Kolla, Samuel Penziner, Kamyar Afshar, Gordon Yung, Eugene Golts, Nancy Law, Cathy Logan, Zsuzsanna Kovach, Gill Mearns, Robert T Schooley, Saima Aslam, Shane Crotty | The Journal Of Infectious Diseases | 2022-09-09 |
| Assembling a Reference Phylogenomic Tree of Bacteria and Archaea by Summarizing Many Gene Phylogenies. | Qiyun Zhu, Siavash Mirarab | Methods In Molecular Biology (Clifton, N.J.) | 2022-09-09 |
| Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References. | Daniel Hakim, Stephen Wandro, Karsten Zengler, Livia S Zaramela, Brent Nowinski, Austin Swafford, Qiyun Zhu, Se Jin Song, Antonio Gonzalez, Daniel McDonald, Rob Knight | MSystems | 2022-09-08 |
| A single-administration therapeutic interfering particle reduces SARS-CoV-2 viral shedding and pathogenesis in hamsters. | Sonali Chaturvedi, Nathan Beutler, Gustavo Vasen, Michael Pablo, Xinyue Chen, Giuliana Calia, Lauren Buie, Robert Rodick, Davey Smith, Thomas Rogers, Leor S Weinberger | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-09-08 |
| Heterogeneous multimeric metabolite ion species observed in LC-MS based metabolomics data sets. | Yasin El Abiead, Christoph Bueschl, Lisa Panzenboeck, Mingxun Wang, Maria Doppler, Bernhard Seidl, Jürgen Zanghellini, Pieter C Dorrestein, Gunda Koellensperger | Analytica Chimica Acta | 2022-09-08 |
| Lessons for conservation from beneath the pavement. | Alexis M Mychajliw, Elizabeth R Ellwood, Peter S Alagona, R Scott Anderson, Mairin A Balisi, Eric Biber, Justin L Brown, Jessie George, Austin J W Hendy, Lila Higgins, Courtney A Hofman, Ashley Leger, Miguel A Ordeñana, Gregory B Pauly, Breanna J Putman, John M Randall, Seth P D Riley, Allison J Shultz, M Allison Stegner, Thomas A Wake, Emily L Lindsey | Conservation Biology : The Journal Of The Society For Conservation Biology | 2022-09-07 |
| Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa. | Akanksha Rajput, Hannah Tsunemoto, Anand V Sastry, Richard Szubin, Kevin Rychel, Siddharth M Chauhan, Joe Pogliano, Bernhard O Palsson | Nucleic Acids Research | 2022-09-06 |
| Research gaps and opportunities in precision nutrition: an NIH workshop report. | Bruce Y Lee, José M Ordovás, Elizabeth J Parks, Cheryl A M Anderson, Albert-László Barabási, Steven K Clinton, Kayla de la Haye, Valerie B Duffy, Paul W Franks, Elizabeth M Ginexi, Kristian J Hammond, Erin C Hanlon, Michael Hittle, Emily Ho, Abigail L Horn, Richard S Isaacson, Patricia L Mabry, Susan Malone, Corby K Martin, Josiemer Mattei, Simin Nikbin Meydani, Lorene M Nelson, Marian L Neuhouser, Brendan Parent, Nicolaas P Pronk, Helen M Roche, Suchi Saria, Frank A J L Scheer, Eran Segal, Mary Ann Sevick, Tim D Spector, Linda B Van Horn, Krista A Varady, Venkata Saroja Voruganti, Marie F Martinez | The American Journal Of Clinical Nutrition | 2022-09-02 |
| -Acetyl Migration within the Sialic Acid Side Chain: A Mechanistic Study Using the Nanoreactor. | Lisa Oh, Yang Ji, Wanqing Li, Ajit Varki, Xi Chen, Lee-Ping Wang | Biochemistry | 2022-09-02 |
| Limited microbiome differences in captive and semi-wild primate populations consuming similar diets. | Sahana Kuthyar, Karli Watson, Shi Huang, Lauren J N Brent, Michael Platt, Julie Horvath, Janis Gonzalez-Martinez, Melween Martínez, Filipa Godoy-Vitorino, Rob Knight, Maria Gloria Dominguez-Bello, Katherine R Amato | FEMS Microbiology Ecology | 2022-09-01 |
| Hyponatremia in Patients With Multisystem Inflammatory Syndrome in Children. | Tatyana Mills, Aditi Trivedi, Adriana H Tremoulet, Daniel Hershey, Jane C Burns | The Pediatric Infectious Disease Journal | 2022-09-01 |
| Proof of Concept for the Detection with Custom Printed Electrodes of Enterobactin as a Marker of . | Alexandra Canciu, Andreea Cernat, Mihaela Tertis, Silvia Botarca, Madalina Adriana Bordea, Joseph Wang, Cecilia Cristea | International Journal Of Molecular Sciences | 2022-08-31 |
| SARS-CoV-2 Omicron Variant of Concern: Everything You Wanted to Know about Omicron but Were Afraid to Ask. | Dong Hoon Shin, Davey M Smith, Jun Yong Choi | Yonsei Medical Journal | 2022-08-31 |
| Introducing the "Microbiomes and Social Equity" Special Collection. | Sue Ishaq, Jack Gilbert | MSystems | 2022-08-29 |
| Location-specific signatures of Crohn's disease at a multi-omics scale. | Carlos G Gonzalez, Robert H Mills, Qiyun Zhu, Consuelo Sauceda, Rob Knight, Parambir S Dulai, David J Gonzalez | Microbiome | 2022-08-24 |
| Multi-omics analyses of airway host-microbe interactions in chronic obstructive pulmonary disease identify potential therapeutic interventions. | Zhengzheng Yan, Boxuan Chen, Yuqiong Yang, Xinzhu Yi, Mingyuan Wei, Gertrude Ecklu-Mensah, Mary M Buschmann, Haiyue Liu, Jingyuan Gao, Weijie Liang, Xiaomin Liu, Junhao Yang, Wei Ma, Zhenyu Liang, Fengyan Wang, Dandan Chen, Lingwei Wang, Weijuan Shi, Martin R Stampfli, Pan Li, Shenhai Gong, Xia Chen, Wensheng Shu, Emad M El-Omar, Jack A Gilbert, Martin J Blaser, Hongwei Zhou, Rongchang Chen, Zhang Wang | Nature Microbiology | 2022-08-22 |
| Antiviral and clinical activity of bamlanivimab in a randomized trial of non-hospitalized adults with COVID-19. | Kara W Chew, Carlee Moser, Eric S Daar, David A Wohl, Jonathan Z Li, Robert W Coombs, Justin Ritz, Mark Giganti, Arzhang Cyrus Javan, Yijia Li, Manish C Choudhary, Rinki Deo, Carlos Malvestutto, Paul Klekotka, Karen Price, Ajay Nirula, William Fischer, Veenu Bala, Ruy M Ribeiro, Alan S Perelson, Courtney V Fletcher, Joseph J Eron, Judith S Currier, , Michael D Hughes, Davey M Smith | Nature Communications | 2022-08-22 |
| SARS-CoV-2 and MERS-CoV Spike Protein Binding Studies Support Stable Mimic of Bound 9--Acetylated Sialic Acids. | Lisa Oh, Ajit Varki, Xi Chen, Lee-Ping Wang | Molecules (Basel, Switzerland) | 2022-08-20 |
| Structural Basis of Stereospecific Vanadium-Dependent Haloperoxidase Family Enzymes in Napyradiomycin Biosynthesis. | Percival Yang-Ting Chen, Sanjoy Adak, Jonathan R Chekan, David K Liscombe, Akimasa Miyanaga, Peter Bernhardt, Stefan Diethelm, Elisha N Fielding, Jonathan H George, Zachary D Miles, Lauren A M Murray, Taylor S Steele, Jaclyn M Winter, Joseph P Noel, Bradley S Moore | Biochemistry | 2022-08-19 |
| Discovery, classification, evolution and diversity of Siglecs. | Takashi Angata, Ajit Varki | Molecular Aspects Of Medicine | 2022-08-18 |
| Interdependence of Sebaceous Lipids and the Microbiome in Atopic Dermatitis. | Samia Almoughrabie, Richard L Gallo | The Journal Of Investigative Dermatology | 2022-08-16 |
| Comparison of the APAS Independence Automated Plate Reader System with the Manual Standard of Care for Processing Urine Culture Specimens. | Megan Chiu, Peiting Kuo, Khrissa Lecrone, Andrew Garcia, Ruohui Chen, Natalie E Quach, Xin M Tu, David T Pride | Microbiology Spectrum | 2022-08-16 |
| A Self-Immolative Fluorescent Probe for Selective Detection of SARS-CoV-2 Main Protease. | Ming Xu, Jiajing Zhou, Yong Cheng, Zhicheng Jin, Alex E Clark, Tengyu He, Wonjun Yim, Yi Li, Yu-Ci Chang, Zhuohong Wu, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Michael D Todd, Jesse V Jokerst | Analytical Chemistry | 2022-08-16 |
| Bicarbonate Effects on Antibacterial Immunity and Mucus Glycobiology in the Cystic Fibrosis Lung: A Review With Selected Experimental Observations. | Ruth Siew, Tzung-Lin Ou, Samira Dahesh, Kathryn Akong, Victor Nizet | Infectious Microbes & Diseases | 2022-08-16 |
| Design and validation of HIV peptide pools for detection of HIV-specific CD4+ and CD8+ T cells. | Rita Al-Kolla, Alba Grifoni, Shane Crotty, Alessandro Sette, Sara Gianella, Jennifer Dan | PloS One | 2022-08-16 |
| Nasal and Plasma Severe Acute Respiratory Syndrome Coronavirus 2 RNA Levels Are Associated With Timing of Symptom Resolution in the ACTIV-2 Trial of Nonhospitalized Adults With Coronavirus Disease 2019. | Yijia Li, Linda J Harrison, Kara W Chew, Judy S Currier, David A Wohl, Eric S Daar, Teresa H Evering, Ryan Wu, Mark Giganti, Justin Ritz, Arzhang Cyrus Javan, Robert W Coombs, Carlee Moser, Michael D Hughes, Joseph J Eron, Davey M Smith, Jonathan Z Li | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-08-15 |
| Structure-Based Identification of Naphthoquinones and Derivatives as Novel Inhibitors of Main Protease M and Papain-like Protease PL of SARS-CoV-2. | Lucianna H Santos, Thales Kronenberger, Renata G Almeida, Elany B Silva, Rafael E O Rocha, Joyce C Oliveira, Luiza V Barreto, Danielle Skinner, Pavla Fajtová, Miriam A Giardini, Brendon Woodworth, Conner Bardine, André L Lourenço, Charles S Craik, Antti Poso, Larissa M Podust, James H McKerrow, Jair L Siqueira-Neto, Anthony J O'Donoghue, Eufrânio N da Silva Júnior, Rafaela S Ferreira | Journal Of Chemical Information And Modeling | 2022-08-12 |
| Author Correction: Cross-reactive immunity against the SARS-CoV-2 Omicron variant is low in pediatric patients with prior COVID-19 or MIS-C. | Juanjie Tang, Tanya Novak, Julian Hecker, Gabrielle Grubbs, Fatema Tuz Zahra, Lorenza Bellusci, Sara Pourhashemi, Janet Chou, Kristin Moffitt, Natasha B Halasa, Stephanie P Schwartz, Tracie C Walker, Keiko M Tarquinio, Matt S Zinter, Mary A Staat, Shira J Gertz, Natalie Z Cvijanovich, Jennifer E Schuster, Laura L Loftis, Bria M Coates, Elizabeth H Mack, Katherine Irby, Julie C Fitzgerald, Courtney M Rowan, Michele Kong, Heidi R Flori, Aline B Maddux, Steven L Shein, Hillary Crandall, Janet R Hume, Charlotte V Hobbs, Adriana H Tremoulet, Chisato Shimizu, Jane C Burns, Sabrina R Chen, Hye Kyung Moon, Christoph Lange, Adrienne G Randolph, Surender Khurana | Nature Communications | 2022-08-12 |
| The Microbiome and Mental Health Across the Lifespan. | Faith Dickerson, Amanda Hazel Dilmore, Filipa Godoy-Vitorino, Tanya T Nguyen, Martin Paulus, Adrian A Pinto-Tomas, Cristofer Moya-Roman, Ibrahim Zuniga-Chaves, Emily G Severance, Dilip V Jeste | Current Topics In Behavioral Neurosciences | 2022-08-11 |
| Broadly neutralizing antibodies to SARS-related viruses can be readily induced in rhesus macaques. | Wan-Ting He, Meng Yuan, Sean Callaghan, Rami Musharrafieh, Ge Song, Murillo Silva, Nathan Beutler, Wen-Hsin Lee, Peter Yong, Jonathan L Torres, Mariane Melo, Panpan Zhou, Fangzhu Zhao, Xueyong Zhu, Linghang Peng, Deli Huang, Fabio Anzanello, James Ricketts, Mara Parren, Elijah Garcia, Melissa Ferguson, William Rinaldi, Stephen A Rawlings, David Nemazee, Davey M Smith, Bryan Briney, Yana Safonova, Thomas F Rogers, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Shane Crotty, Darrell J Irvine, Andrew B Ward, Ian A Wilson, Dennis R Burton, Raiees Andrabi | Science Translational Medicine | 2022-08-10 |
| Acetate reprograms gut microbiota during alcohol consumption. | Cameron Martino, Livia S Zaramela, Bei Gao, Mallory Embree, Janna Tarasova, Seth J Parker, Yanhan Wang, Huikuan Chu, Peng Chen, Kuei-Chuan Lee, Daniela Domingos Galzerani, Jivani M Gengatharan, Asama Lekbua, Maxwell Neal, Rob Knight, Hidekazu Tsukamoto, Christian M Metallo, Bernd Schnabl, Karsten Zengler | Nature Communications | 2022-08-08 |
| Native metabolomics identifies the rivulariapeptolide family of protease inhibitors. | Raphael Reher, Allegra T Aron, Pavla Fajtová, Paolo Stincone, Berenike Wagner, Alicia I Pérez-Lorente, Chenxi Liu, Ido Y Ben Shalom, Wout Bittremieux, Mingxun Wang, Kyowon Jeong, Marie L Matos-Hernandez, Kelsey L Alexander, Eduardo J Caro-Diaz, C Benjamin Naman, J H William Scanlan, Phil M M Hochban, Wibke E Diederich, Carlos Molina-Santiago, Diego Romero, Khaled A Selim, Peter Sass, Heike Brötz-Oesterhelt, Chambers C Hughes, Pieter C Dorrestein, Anthony J O'Donoghue, William H Gerwick, Daniel Petras | Nature Communications | 2022-08-08 |
| Breathing and tilting: mesoscale simulations illuminate influenza glycoprotein vulnerabilities. | Lorenzo Casalino, Christian Seitz, Julia Lederhofer, Yaroslav Tsybovsky, Ian A Wilson, Masaru Kanekiyo, Rommie E Amaro | BioRxiv : The Preprint Server For Biology | 2022-08-07 |
| Intestinal transgene delivery with native E. coli chassis allows persistent physiological changes. | Baylee J Russell, Steven D Brown, Nicole Siguenza, Irene Mai, Anand R Saran, Amulya Lingaraju, Erica S Maissy, Ana C Dantas Machado, Antonio F M Pinto, Concepcion Sanchez, Leigh-Ana Rossitto, Yukiko Miyamoto, R Alexander Richter, Samuel B Ho, Lars Eckmann, Jeff Hasty, David J Gonzalez, Alan Saghatelian, Rob Knight, Amir Zarrinpar | Cell | 2022-08-04 |
| Architecture and self-assembly of the jumbo bacteriophage nuclear shell. | Thomas G Laughlin, Amar Deep, Amy M Prichard, Christian Seitz, Yajie Gu, Eray Enustun, Sergey Suslov, Kanika Khanna, Erica A Birkholz, Emily Armbruster, J Andrew McCammon, Rommie E Amaro, Joe Pogliano, Kevin D Corbett, Elizabeth Villa | Nature | 2022-08-03 |
| Duodenal CD8+ T resident memory cell apoptosis contributes to gut barrier dysfunction and microbial translocation in early alcohol-associated liver disease in humans. | Luca Maccioni, Axelle Loriot, Joseph Dewulf, Guido Bommer, Yves Horsmans, Nicolas Lanthier, Isabelle Leclercq, Bernd Schnabl, Peter Stärkel | Alimentary Pharmacology & Therapeutics | 2022-08-02 |
| Fostering Sustainable Biomedical Research Training in Mozambique: A Spin-Off of the Medical Education Partnership Initiative. | Emília Virgínia Noormahomed, Sérgio Noormahomed, Delfina Hlashwayo, Emília Martins, Mamudo Ismail, Stephen W Bickler, Jean Nachega, Manuel Mahoche, Kim E Barrett, Constance A Benson, Robert T Schooley | Annals Of Global Health | 2022-08-02 |
| Vascular Proteome Responses Precede Organ Dysfunction in a Murine Model of Staphylococcus aureus Bacteremia. | James T Sorrentino, Gregory J Golden, Claire Morris, Chelsea D Painter, Victor Nizet, Alexandre Rosa Campos, Jeffrey W Smith, Christofer Karlsson, Johan Malmström, Nathan E Lewis, Jeffrey D Esko, Alejandro Gómez Toledo | MSystems | 2022-08-01 |
| Analysis of the FAST™ system for expedited identification and antimicrobial susceptibility testing of bloodborne pathogens. | Peiting Kuo, Khrissa LeCrone, Megan Chiu, Susan Realegeno, David T Pride | Diagnostic Microbiology And Infectious Disease | 2022-07-30 |
| The group A interleukin-8 protease SpyCEP promotes bacterial intracellular survival by evasion of autophagy. | René Bergmann, Giuseppe Gulotta, Federica Andreoni, Tomoko Sumitomo, Shigetada Kawabata, Annelies S Zinkernagel, Gursharan S Chhatwal, Victor Nizet, Manfred Rohde, Satoshi Uchiyama | Infectious Microbes & Diseases | 2022-07-30 |
| Evaluating impacts of syntenic block detection strategies on rearrangement phylogeny using Mycobacterium tuberculosis isolates. | Afif Elghraoui, Siavash Mirarab, Krister M Swenson, Faramarz Valafar | Bioinformatics (Oxford, England) | 2022-07-29 |
| Microbiota succession throughout life from the cradle to the grave. | Cameron Martino, Amanda Hazel Dilmore, Zachary M Burcham, Jessica L Metcalf, Dilip Jeste, Rob Knight | Nature Reviews. Microbiology | 2022-07-29 |
| RNA Fluorescence in situ Hybridization (FISH) to Visualize Microbial Colonization and Infection in Caenorhabditis elegans Intestines. | Dalaena E Rivera, Vladimir Lažetić, Emily R Troemel, Robert J Luallen | Journal Of Visualized Experiments : JoVE | 2022-07-27 |
| Comparative Pharmacokinetics of Tixagevimab/Cilgavimab (AZD7442) Administered Intravenously Versus Intramuscularly in Symptomatic SARS-CoV-2 Infection. | Rachel A Bender Ignacio, David A Wohl, Rosalin Arends, Venkatesh Pilla Reddy, Ying Mu, Arzhang Cyrus Javan, Michael D Hughes, Joseph J Eron, Judith S Currier, Davey Smith, Kara W Chew, Michael Gibbs, Courtney V Fletcher | Clinical Pharmacology And Therapeutics | 2022-07-26 |
| Non-invasive skin sampling detects systemically administered drugs in humans. | Morgan Panitchpakdi, Kelly C Weldon, Alan K Jarmusch, Emily C Gentry, Arianna Choi, Yadira Sepulveda, Shaden Aguirre, Kunyang Sun, Jeremiah D Momper, Pieter C Dorrestein, Shirley M Tsunoda | PloS One | 2022-07-26 |
| Correction for Rudicell et al., "High Prevalence of Simian Immunodeficiency Virus Infection in a Community of Savanna Chimpanzees". | Rebecca S Rudicell, Alex K Piel, Fiona Stewart, Deborah L Moore, Gerald H Learn, Yingying Li, Jun Takehisa, Lilian Pintea, George M Shaw, Jim Moore, Paul M Sharp, Beatrice H Hahn | Journal Of Virology | 2022-07-26 |
| Lymphatic-preserving treatment sequencing with immune checkpoint inhibition unleashes cDC1-dependent antitumor immunity in HNSCC. | Robert Saddawi-Konefka, Aoife O'Farrell, Farhoud Faraji, Lauren Clubb, Michael M Allevato, Shawn M Jensen, Bryan S Yung, Zhiyong Wang, Victoria H Wu, Nana-Ama Anang, Riyam Al Msari, Shiruyeh Schokrpur, Ida Franiak Pietryga, Alfredo A Molinolo, Jill P Mesirov, Aaron B Simon, Bernard A Fox, Jack D Bui, Andrew Sharabi, Ezra E W Cohen, Joseph A Califano, J Silvio Gutkind | Nature Communications | 2022-07-25 |
| Protease-Responsive Peptide-Conjugated Mitochondrial-Targeting AIEgens for Selective Imaging and Inhibition of SARS-CoV-2-Infected Cells. | Yong Cheng, Alex E Clark, Jiajing Zhou, Tengyu He, Yi Li, Raina M Borum, Matthew N Creyer, Ming Xu, Zhicheng Jin, Jingcheng Zhou, Wonjun Yim, Zhuohong Wu, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Jesse V Jokerst | ACS Nano | 2022-07-25 |
| Association of compassion and empathy with prosocial health behaviors and attitudes in a pandemic. | Melissa M Karnaze, John Bellettiere, Cinnamon S Bloss | PloS One | 2022-07-22 |
| TREM2 macrophages induced by human lipids drive inflammation in acne lesions. | Tran H Do, Feiyang Ma, Priscila R Andrade, Rosane Teles, Bruno J de Andrade Silva, Chanyue Hu, Alejandro Espinoza, Jer-En Hsu, Chun-Seok Cho, Myungjin Kim, Jingyue Xi, Xianying Xing, Olesya Plazyo, Lam C Tsoi, Carol Cheng, Jenny Kim, Bryan D Bryson, Alan M O'Neill, Marco Colonna, Johann E Gudjonsson, Eynav Klechevsky, Jun Hee Lee, Richard L Gallo, Barry R Bloom, Matteo Pellegrini, Robert L Modlin | Science Immunology | 2022-07-22 |
| Coupling of distant ATPase domains in the circadian clock protein KaiC. | Jeffrey A Swan, Colby R Sandate, Archana G Chavan, Alfred M Freeberg, Diana Etwaru, Dustin C Ernst, Joseph G Palacios, Susan S Golden, Andy LiWang, Gabriel C Lander, Carrie L Partch | Nature Structural & Molecular Biology | 2022-07-21 |
| Harnessing the microbiome to prevent global biodiversity loss. | Raquel S Peixoto, Christian R Voolstra, Michael Sweet, Carlos M Duarte, Susana Carvalho, Helena Villela, Jeantine E Lunshof, Lone Gram, Douglas C Woodhams, Jens Walter, Anna Roik, Ute Hentschel, Rebecca Vega Thurber, Brendan Daisley, Blake Ushijima, Daniele Daffonchio, Rodrigo Costa, Tina Keller-Costa, Jeff S Bowman, Alexandre S Rosado, Gregor Reid, Christopher E Mason, Jenifer B Walke, Torsten Thomas, Gabriele Berg | Nature Microbiology | 2022-07-21 |
| Omicron spike function and neutralizing activity elicited by a comprehensive panel of vaccines. | John E Bowen, Amin Addetia, Ha V Dang, Cameron Stewart, Jack T Brown, William K Sharkey, Kaitlin R Sprouse, Alexandra C Walls, Ignacio G Mazzitelli, Jennifer K Logue, Nicholas M Franko, Nadine Czudnochowski, Abigail E Powell, Exequiel Dellota, Kumail Ahmed, Asefa Shariq Ansari, Elisabetta Cameroni, Andrea Gori, Alessandra Bandera, Christine M Posavad, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Shane Crotty, Najeeha Talat Iqbal, Davide Corti, Jorge Geffner, Gyorgy Snell, Renata Grifantini, Helen Y Chu, David Veesler | Science (New York, N.Y.) | 2022-07-19 |
| Adaptive laboratory evolution and independent component analysis disentangle complex vancomycin adaptation trajectories. | Anaëlle Fait, Yara Seif, Kasper Mikkelsen, Saugat Poudel, Jerry M Wells, Bernhard O Palsson, Hanne Ingmer | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-07-19 |
| Association of Plasma Eicosanoid Levels With Immune, Viral, and Cognitive Outcomes in People With HIV. | Pragney Deme, Mohammed Moniruzzaman, David Moore, Robert Heaton, Ronald Ellis, Scott Letendre, Norman Haughey | Neurology | 2022-07-18 |
| Postural orthostatic tachycardia syndrome as a sequela of COVID-19. | Cameron K Ormiston, Iwona Świątkiewicz, Pam R Taub | Heart Rhythm | 2022-07-16 |
| Mass Difference Matching Unfolds Hidden Molecular Structures of Dissolved Organic Matter. | Carsten Simon, Kai Dührkop, Daniel Petras, Vanessa-Nina Roth, Sebastian Böcker, Pieter C Dorrestein, Gerd Gleixner | Environmental Science & Technology | 2022-07-14 |
| Genetic regulation of OAS1 nonsense-mediated decay underlies association with COVID-19 hospitalization in patients of European and African ancestries. | A Rouf Banday, Megan L Stanifer, Oscar Florez-Vargas, Olusegun O Onabajo, Brenen W Papenberg, Muhammad A Zahoor, Lisa Mirabello, Timothy J Ring, Chia-Han Lee, Paul S Albert, Evangelos Andreakos, Evgeny Arons, Greg Barsh, Leslie G Biesecker, David L Boyle, Mark S Brahier, Andrea Burnett-Hartman, Mary Carrington, Euijin Chang, Pyoeng Gyun Choe, Rex L Chisholm, Leandro M Colli, Clifton L Dalgard, Carolynn M Dude, Jeff Edberg, Nathan Erdmann, Heather S Feigelson, Benedito A Fonseca, Gary S Firestein, Adam J Gehring, Cuncai Guo, Michelle Ho, Steven Holland, Amy A Hutchinson, Hogune Im, Les'Shon Irby, Michael G Ison, Naima T Joseph, Hong Bin Kim, Robert J Kreitman, Bruce R Korf, Steven M Lipkin, Siham M Mahgoub, Iman Mohammed, Guilherme L Paschoalini, Jennifer A Pacheco, Michael J Peluso, Daniel J Rader, David T Redden, Marylyn D Ritchie, Brooke Rosenblum, M Elizabeth Ross, Hanaisa P Sant Anna, Sharon A Savage, Sudha Sharma, Eleni Siouti, Alicia K Smith, Vasiliki Triantafyllia, Joselin M Vargas, Jose D Vargas, Anurag Verma, Vibha Vij, Duane R Wesemann, Meredith Yeager, Xu Yu, Yu Zhang, Steeve Boulant, Stephen J Chanock, Jordan J Feld, Ludmila Prokunina-Olsson | Nature Genetics | 2022-07-14 |
| Non-Native Amino Acid Click Chemistry-Based Technology for Site-Specific Polysaccharide Conjugation to a Bacterial Protein Serving as Both Carrier and Vaccine Antigen. | Neeraj Kapoor, Satoshi Uchiyama, Lucy Pill, Leslie Bautista, Angie Sedra, Lu Yin, Maritoni Regan, Ellen Chu, Taylor Rabara, Melissa Wong, Peter Davey, Jeff Fairman, Victor Nizet | ACS Omega | 2022-07-11 |
| The Prevalence and Determinants of NAFLD and MAFLD and Their Severity in the VA Primary Care Setting. | Aaron P Thrift, Theresa H Nguyen, Codey Pham, Maya Balakrishnan, Fasiha Kanwal, Rohit Loomba, Hao T Duong, David Ramsey, Hashem B El-Serag | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2022-07-08 |
| Updating Urinary Microbiome Analyses to Enhance Biologic Interpretation. | Nazema Y Siddiqui, Li Ma, Linda Brubaker, Jialiang Mao, Carter Hoffman, Erin M Dahl, Zhuoqun Wang, Lisa Karstens | Frontiers In Cellular And Infection Microbiology | 2022-07-08 |
| Comparative Dynamics of Delta and Omicron SARS-CoV-2 Variants across and between California and Mexico. | Sanjay R Mehta, Davey M Smith, Celia Boukadida, Antoine Chaillon | Viruses | 2022-07-08 |
| Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission. | Smruthi Karthikeyan, Joshua I Levy, Peter De Hoff, Greg Humphrey, Amanda Birmingham, Kristen Jepsen, Sawyer Farmer, Helena M Tubb, Tommy Valles, Caitlin E Tribelhorn, Rebecca Tsai, Stefan Aigner, Shashank Sathe, Niema Moshiri, Benjamin Henson, Adam M Mark, Abbas Hakim, Nathan A Baer, Tom Barber, Pedro Belda-Ferre, Marisol Chacón, Willi Cheung, Evelyn S Cresini, Emily R Eisner, Alma L Lastrella, Elijah S Lawrence, Clarisse A Marotz, Toan T Ngo, Tyler Ostrander, Ashley Plascencia, Rodolfo A Salido, Phoebe Seaver, Elizabeth W Smoot, Daniel McDonald, Robert M Neuhard, Angela L Scioscia, Alysson M Satterlund, Elizabeth H Simmons, Dismas B Abelman, David Brenner, Judith C Bruner, Anne Buckley, Michael Ellison, Jeffrey Gattas, Steven L Gonias, Matt Hale, Faith Hawkins, Lydia Ikeda, Hemlata Jhaveri, Ted Johnson, Vince Kellen, Brendan Kremer, Gary Matthews, Ronald W McLawhon, Pierre Ouillet, Daniel Park, Allorah Pradenas, Sharon Reed, Lindsay Riggs, Alison Sanders, Bradley Sollenberger, Angela Song, Benjamin White, Terri Winbush, Christine M Aceves, Catelyn Anderson, Karthik Gangavarapu, Emory Hufbauer, Ezra Kurzban, Justin Lee, Nathaniel L Matteson, Edyth Parker, Sarah A Perkins, Karthik S Ramesh, Refugio Robles-Sikisaka, Madison A Schwab, Emily Spencer, Shirlee Wohl, Laura Nicholson, Ian H Mchardy, David P Dimmock, Charlotte A Hobbs, Omid Bakhtar, Aaron Harding, Art Mendoza, Alexandre Bolze, David Becker, Elizabeth T Cirulli, Magnus Isaksson, Kelly M Schiabor Barrett, Nicole L Washington, John D Malone, Ashleigh Murphy Schafer, Nikos Gurfield, Sarah Stous, Rebecca Fielding-Miller, Richard S Garfein, Tommi Gaines, Cheryl Anderson, Natasha K Martin, Robert Schooley, Brett Austin, Duncan R MacCannell, Stephen F Kingsmore, William Lee, Seema Shah, Eric McDonald, Alexander T Yu, Mark Zeller, Kathleen M Fisch, Christopher Longhurst, Patty Maysent, David Pride, Pradeep K Khosla, Louise C Laurent, Gene W Yeo, Kristian G Andersen, Rob Knight | Nature | 2022-07-07 |
| Enhancing untargeted metabolomics using metadata-based source annotation. | Julia M Gauglitz, Kiana A West, Wout Bittremieux, Candace L Williams, Kelly C Weldon, Morgan Panitchpakdi, Francesca Di Ottavio, Christine M Aceves, Elizabeth Brown, Nicole C Sikora, Alan K Jarmusch, Cameron Martino, Anupriya Tripathi, Michael J Meehan, Kathleen Dorrestein, Justin P Shaffer, Roxana Coras, Fernando Vargas, Lindsay DeRight Goldasich, Tara Schwartz, MacKenzie Bryant, Gregory Humphrey, Abigail J Johnson, Katharina Spengler, Pedro Belda-Ferre, Edgar Diaz, Daniel McDonald, Qiyun Zhu, Emmanuel O Elijah, Mingxun Wang, Clarisse Marotz, Kate E Sprecher, Daniela Vargas-Robles, Dana Withrow, Gail Ackermann, Lourdes Herrera, Barry J Bradford, Lucas Maciel Mauriz Marques, Juliano Geraldo Amaral, Rodrigo Moreira Silva, Flavio Protasio Veras, Thiago Mattar Cunha, Rene Donizeti Ribeiro Oliveira, Paulo Louzada-Junior, Robert H Mills, Paulina K Piotrowski, Stephanie L Servetas, Sandra M Da Silva, Christina M Jones, Nancy J Lin, Katrice A Lippa, Scott A Jackson, Rima Kaddurah Daouk, Douglas Galasko, Parambir S Dulai, Tatyana I Kalashnikova, Curt Wittenberg, Robert Terkeltaub, Megan M Doty, Jae H Kim, Kyung E Rhee, Julia Beauchamp-Walters, Kenneth P Wright, Maria Gloria Dominguez-Bello, Mark Manary, Michelli F Oliveira, Brigid S Boland, Norberto Peporine Lopes, Monica Guma, Austin D Swafford, Rachel J Dutton, Rob Knight, Pieter C Dorrestein | Nature Biotechnology | 2022-07-07 |
| Spike-heparan sulfate interactions in SARS-CoV-2 infection. | Fiona L Kearns, Daniel R Sandoval, Lorenzo Casalino, Thomas M Clausen, Mia A Rosenfeld, Charlotte B Spliid, Rommie E Amaro, Jeffrey D Esko | Current Opinion In Structural Biology | 2022-07-06 |
| Host-parasite coevolution promotes innovation through deformations in fitness landscapes. | Animesh Gupta, Luis Zaman, Hannah M Strobel, Jenna Gallie, Alita R Burmeister, Benjamin Kerr, Einat S Tamar, Roy Kishony, Justin R Meyer | ELife | 2022-07-06 |
| Liver cirrhosis and immune dysfunction. | Elda Hasa, Phillipp Hartmann, Bernd Schnabl | International Immunology | 2022-07-06 |
| Increased Innate Immune Susceptibility in Hyperpigmented Bacteriophage-Resistant Mutants of Pseudomonas aeruginosa. | Nitasha D Menon, Samuel Penziner, Elizabeth T Montaño, Raymond Zurich, David T Pride, Bipin G Nair, Geetha B Kumar, Victor Nizet | Antimicrobial Agents And Chemotherapy | 2022-07-06 |
| Genomically Silent Refractory Gastric Cancer in a Young Patient Exhibits Overexpression of CXCL5. | Jonathan Hernandez, Michael A Turner, Prerna Bali, Mojgan Hosseini, Michael Bouvet, Kaitlyn Kelly, Marygorret Obonyo | Current Oncology (Toronto, Ont.) | 2022-07-06 |
| Effects of single and dual hypocretin-receptor blockade or knockdown of hypocretin projections to the central amygdala on alcohol drinking in dependent male rats. | Gabriel M Aldridge, Tyler A Zarin, Adam J Brandner, Olivier George, Nicholas W Gilpin, Vez Repunte-Canonigo, Pietro P Sanna, George F Koob, Leandro F Vendruscolo, Brooke E Schmeichel | Addiction Neuroscience | 2022-07-03 |
| Willingness of older Canadians with HIV to participate in HIV cure research near and after the end-of-life: A mixed-method study. | David Lessard, Karine Dube, Martin Bilodeau, Patrick Keeler, Shari Margolese, Ron Rosenes, Liliya Sinyavskaya, Madeleine Durand, Erika Benko, Colin Kovacs, Charlotte Guerlotté, Wangari E Tharao, Keresa Arnold, Renée Masching, Darien Taylor, José Sousa, Mario Ostrowski, Jeff Taylor, Andy Kaytes, Davey Smith, Sara Gianella Weibel, Nicolas Chomont, Jonathan B Angel, Jean-Pierre Routy, Eric Cohen, Bertrand Lebouche, Cecilia T Costiniuk | AIDS Research And Human Retroviruses | 2022-07-01 |
| T Cells in Multisystem Inflammatory Syndrome in Children (MIS-C) Have a Predominant CD4+ T Helper Response to SARS-CoV-2 Peptides and Numerous Virus-Specific CD4- CD8- Double-Negative T Cells. | Li-En Hsieh, Jaeyoon Song, Alba Grifoni, Chisato Shimizu, Adriana H Tremoulet, Kirsten B Dummer, Jane C Burns, Alessandro Sette, Alessandra Franco | International Journal Of Molecular Sciences | 2022-06-29 |
| Human Milk Oligosaccharides Impact Cellular and Inflammatory Gene Expression and Immune Response. | Fernanda Rosa, Ashok K Sharma, Manoj Gurung, David Casero, Katelin Matazel, Lars Bode, Christy Simecka, Ahmed A Elolimy, Patricia Tripp, Christopher Randolph, Timothy W Hand, Keith D Williams, Tanya LeRoith, Laxmi Yeruva | Frontiers In Immunology | 2022-06-29 |
| Phage Cocktails Constrain the Growth of . | Stephen Wandro, Pooja Ghatbale, Hedieh Attai, Clark Hendrickson, Cyril Samillano, Joy Suh, Sage J B Dunham, David T Pride, Katrine Whiteson | MSystems | 2022-06-28 |
| Context-aware deconvolution of cell-cell communication with Tensor-cell2cell. | Erick Armingol, Hratch M Baghdassarian, Cameron Martino, Araceli Perez-Lopez, Caitlin Aamodt, Rob Knight, Nathan E Lewis | Nature Communications | 2022-06-27 |
| Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity. | Amitesh Anand, Arjun Patel, Ke Chen, Connor A Olson, Patrick V Phaneuf, Cameron Lamoureux, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O Palsson | Nature Communications | 2022-06-27 |
| Heterologous Expression in of the Columbamide Pathway from the Cyanobacterium and Production of New Analogs. | Arnaud Taton, Sebastian Rohrer, Brienna Diaz, Raphael Reher, Andres Mauricio Caraballo Rodriguez, Marsha L Pierce, Pieter C Dorrestein, Lena Gerwick, William H Gerwick, James W Golden | ACS Chemical Biology | 2022-06-27 |
| The molecular impact of life in an indoor environment. | Alexander A Aksenov, Rodolfo A Salido, Alexey V Melnik, Caitriona Brennan, Asker Brejnrod, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, Franck Lejzerowicz, Delphine K Farmer, Marina E Vance, Rob Knight, Pieter C Dorrestein | Science Advances | 2022-06-24 |
| Immunological memory to SARS-CoV-2 infection and COVID-19 vaccines. | Alessandro Sette, Shane Crotty | Immunological Reviews | 2022-06-22 |
| An M protein coiled coil unfurls and exposes its hydrophobic core to capture LL-37. | Piotr Kolesinski, Kuei-Chen Wang, Yujiro Hirose, Victor Nizet, Partho Ghosh | ELife | 2022-06-21 |
| Monoclonal antibody treatment drives rapid culture conversion in SARS-CoV-2 infection. | Julie Boucau, Kara W Chew, Manish C Choudhary, Rinki Deo, James Regan, James P Flynn, Charles R Crain, Michael D Hughes, Justin Ritz, Carlee Moser, Joan A Dragavon, Arzhang C Javan, Ajay Nirula, Paul Klekotka, Alexander L Greninger, Robert W Coombs, William A Fischer, Eric S Daar, David A Wohl, Joseph J Eron, Judith S Currier, Davey M Smith, , Jonathan Z Li, Amy K Barczak, | Cell Reports. Medicine | 2022-06-20 |
| Contribution of Streptococcus pyogenes M87 protein to innate immune resistance and virulence. | Yujiro Hirose, Piotr Kolesinski, Masanobu Hiraoka, Satoshi Uchiyama, Raymond H Zurich, Monika Kumaraswamy, Elisabet Bjanes, Partho Ghosh, Shigetada Kawabata, Victor Nizet | Microbial Pathogenesis | 2022-06-17 |
| A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities. | Justin P Shaffer, Carolina S Carpenter, Cameron Martino, Rodolfo A Salido, Jeremiah J Minich, MacKenzie Bryant, Karenina Sanders, Tara Schwartz, Gregory Humphrey, Austin D Swafford, Rob Knight | BioTechniques | 2022-06-17 |
| Single-cell characterization of step-wise acquisition of carboplatin resistance in ovarian cancer. | Alexander T Wenzel, Devora Champa, Hrishi Venkatesh, Si Sun, Cheng-Yu Tsai, Jill P Mesirov, Jack D Bui, Stephen B Howell, Olivier Harismendy | NPJ Systems Biology And Applications | 2022-06-17 |
| Characterizing genetic transmission networks among newly diagnosed HIV-1 infected individuals in eastern China: 2012-2016. | Xiaobei Ding, Antoine Chaillon, Xiaohong Pan, Jiafeng Zhang, Ping Zhong, Lin He, Wanjun Chen, Qin Fan, Jun Jiang, Mingyu Luo, Yan Xia, Zhihong Guo, Davey M Smith | PloS One | 2022-06-16 |
| Small-Molecule Thioesters as SARS-CoV-2 Main Protease Inhibitors: Enzyme Inhibition, Structure-Activity Relationships, Antiviral Activity, and X-ray Structure Determination. | Thanigaimalai Pillaiyar, Philipp Flury, Nadine Krüger, Haixia Su, Laura Schäkel, Elany Barbosa Da Silva, Olga Eppler, Thales Kronenberger, Tianqing Nie, Stephanie Luedtke, Cheila Rocha, Katharina Sylvester, Marvin R I Petry, James H McKerrow, Antti Poso, Stefan Pöhlmann, Michael Gütschow, Anthony J O'Donoghue, Yechun Xu, Christa E Müller, Stefan A Laufer | Journal Of Medicinal Chemistry | 2022-06-16 |
| Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings. | Victor J Cantú, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Karenina Sanders, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Evelyn S Crescini, Peter De Hoff, Emily Eisner, Abbas Hakim, Bhavika Kapadia, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Shashank Sathe, Phoebe Seaver, Elizabeth W Smoot, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight | MSystems | 2022-06-15 |
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| Potential Immune-Microbiome Interactions in Breast Cancer May Advance Treatment: What's Holding Us Back? | Austin D Swafford, Soni Khandelwal, Shrikant Bhute | Critical Reviews In Immunology | 2022-06-13 |
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| Diurnal and eating-associated microbial patterns revealed via high-frequency saliva sampling. | Yichen Hu, Amnon Amir, Xiaochang Huang, Yan Li, Shi Huang, Elaine Wolfe, Sophie Weiss, Rob Knight, Zhenjiang Zech Xu | Genome Research | 2022-06-10 |
| Letter: non-invasive prediction models to exclude cirrhosis in NAFLD-not everyone fits the mould. Authors' reply. | Danielle Brandman, Marie Boyle, Stuart McPherson, Mark L Van Natta, Arun J Sanyal, Kris Kowdley, Brent Neuschwander-Tetri, Naga Chalasani, Manal F Abdelmalek, Norah A Terrault, Art McCullough, Ricki Bettencourt, Cyrielle Caussy, David E Kleiner, Cynthia Behling, James Tonascia, Quentin M Anstee, Rohit Loomba | Alimentary Pharmacology & Therapeutics | 2022-06-10 |
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| Binding of the SARS-CoV-2 envelope E protein to human BRD4 is essential for infection. | Kendra R Vann, Arpan Acharya, Suk Min Jang, Catherine Lachance, Mohamad Zandian, Tina A Holt, Audrey L Smith, Kabita Pandey, Donald L Durden, Dalia El-Gamal, Jacques Côté, Siddappa N Byrareddy, Tatiana G Kutateladze | Structure (London, England : 1993) | 2022-06-09 |
| The Urobiomes of Adult Women With Various Lower Urinary Tract Symptoms Status Differ: A Re-Analysis. | Cara Joyce, Thomas Halverson, Caroline Gonzalez, Linda Brubaker, Alan J Wolfe | Frontiers In Cellular And Infection Microbiology | 2022-06-09 |
| Risk assessment with gut microbiome and metabolite markers in NAFLD development. | Howell Leung, Xiaoxue Long, Yueqiong Ni, Lingling Qian, Emmanouil Nychas, Sara Leal Siliceo, Dennis Pohl, Kati Hanhineva, Yan Liu, Aimin Xu, Henrik B Nielsen, Eugeni Belda, Karine Clément, Rohit Loomba, Huating Li, Weiping Jia, Gianni Panagiotou | Science Translational Medicine | 2022-06-08 |
| Solithromycin in Children and Adolescents With Community-acquired Bacterial Pneumonia. | Jason E Lang, Christoph P Hornik, Carrie Elliott, Adam Silverstein, Chi Hornik, Amira Al-Uzri, Miroslava Bosheva, John S Bradley, Charissa Fay Corazon Borja-Tabora, David Di John, Ana Mendez Echevarria, Jessica E Ericson, David Friedel, Ferenc Gonczi, Marie Grace Dawn Isidro, Laura P James, Krisztina Kalocsai, Ioannis Koutroulis, Istvan Laki, Anna Lisa T Ong-Lim, Marta Nad, Gabor Simon, Salma Syed, Eva Szabo, Daniel K Benjamin, Michael Cohen-Wolkowiez, | The Pediatric Infectious Disease Journal | 2022-06-07 |
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| The oral microbiome and breast cancer and non-malignant breast disease, and its relationship with the fecal microbiome in the Ghana Breast Health Study. | Zeni Wu, Doratha A Byrd, Yunhu Wan, Daniel Ansong, Joe-Nat Clegg-Lamptey, Beatrice Wiafe-Addai, Lawrence Edusei, Ernest Adjei, Nicholas Titiloye, Florence Dedey, Francis Aitpillah, Joseph Oppong, Verna Vanderpuye, Ernest Osei-Bonsu, Casey L Dagnall, Kristine Jones, Amy Hutchinson, Belynda D Hicks, Thomas U Ahearn, Jianxin Shi, Rob Knight, Richard Biritwum, Joel Yarney, Seth Wiafe, Baffour Awuah, Kofi Nyarko, Jonine D Figueroa, Rashmi Sinha, Montserrat Garcia-Closas, Louise A Brinton, Emily Vogtmann | International Journal Of Cancer | 2022-06-03 |
| Changing global epidemiology of liver cancer from 2010 to 2019: NASH is the fastest growing cause of liver cancer. | Daniel Q Huang, Amit G Singal, Yuko Kono, Darren J H Tan, Hashem B El-Serag, Rohit Loomba | Cell Metabolism | 2022-06-03 |
| Synchrony and idiosyncrasy in the gut microbiome of wild baboons. | Johannes R Björk, Mauna R Dasari, Kim Roche, Laura Grieneisen, Trevor J Gould, Jean-Christophe Grenier, Vania Yotova, Neil Gottel, David Jansen, Laurence R Gesquiere, Jacob B Gordon, Niki H Learn, Tim L Wango, Raphael S Mututua, J Kinyua Warutere, Long'ida Siodi, Sayan Mukherjee, Luis B Barreiro, Susan C Alberts, Jack A Gilbert, Jenny Tung, Ran Blekhman, Elizabeth A Archie | Nature Ecology & Evolution | 2022-06-02 |
| Targeted isolation of diverse human protective broadly neutralizing antibodies against SARS-like viruses. | Wan-Ting He, Rami Musharrafieh, Ge Song, Katharina Dueker, Longping V Tse, David R Martinez, Alexandra Schäfer, Sean Callaghan, Peter Yong, Nathan Beutler, Jonathan L Torres, Reid M Volk, Panpan Zhou, Meng Yuan, Hejun Liu, Fabio Anzanello, Tazio Capozzola, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, Ian A Wilson, Yana Safonova, Andrew B Ward, Thomas F Rogers, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees Andrabi | Nature Immunology | 2022-06-02 |
| Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention. | Stephanie B Orchanian, Julia M Gauglitz, Stephen Wandro, Kelly C Weldon, Megan Doty, Kristina Stillwell, Shalisa Hansen, Lingjing Jiang, Fernando Vargas, Kyung E Rhee, Julie C Lumeng, Pieter C Dorrestein, Rob Knight, Jae H Kim, Se Jin Song, Austin D Swafford | Advanced Biology | 2022-06-01 |
| Epidemiological and Clinical Features of Kawasaki Disease During the COVID-19 Pandemic in the United States. | Jennifer A Burney, Samantha C Roberts, Laurel L DeHaan, Chisato Shimizu, Emelia V Bainto, Jane W Newburger, Samuel Dominguez, Pei-Ni Jone, Preeti Jaggi, Jacqueline R Szmuszkovicz, Anne H Rowley, Nichole Samuy, Paul Scalici, Adriana H Tremoulet, Daniel R Cayan, Jane C Burns, | JAMA Network Open | 2022-06-01 |
| Risk of Hepatocellular Carcinoma With Tenofovir vs Entecavir Treatment for Chronic Hepatitis B Virus: A Reconstructed Individual Patient Data Meta-analysis. | Darren Jun Hao Tan, Cheng Han Ng, Phoebe Wen Lin Tay, Nicholas Syn, Mark D Muthiah, Wen Hui Lim, Ansel Shao Pin Tang, Kai En Lim, Grace En Hui Lim, Nobuharu Tamaki, Beom Kyung Kim, Margaret Li Peng Teng, James Fung, Rohit Loomba, Mindie H Nguyen, Daniel Q Huang | JAMA Network Open | 2022-06-01 |
| Optimizing UniFrac with OpenACC Yields Greater Than One Thousand Times Speed Increase. | Igor Sfiligoi, George Armstrong, Antonio Gonzalez, Daniel McDonald, Rob Knight | MSystems | 2022-05-31 |
| Bacteriophage-Mediated Perturbation of Defined Bacterial Communities in an Model of the Human Gut. | Hedieh Attai, Jacob Wilde, Roland Liu, Jessica Chopyk, Andrew G Garcia, Emma Allen-Vercoe, David Pride | Microbiology Spectrum | 2022-05-31 |
| Cross-reactive immunity against the SARS-CoV-2 Omicron variant is low in pediatric patients with prior COVID-19 or MIS-C. | Juanjie Tang, Tanya Novak, Julian Hecker, Gabrielle Grubbs, Fatema Tuz Zahra, Lorenza Bellusci, Sara Pourhashemi, Janet Chou, Kristin Moffitt, Natasha B Halasa, Stephanie P Schwartz, Tracie C Walker, Keiko M Tarquinio, Matt S Zinter, Mary A Staat, Shira J Gertz, Natalie Z Cvijanovich, Jennifer E Schuster, Laura L Loftis, Bria M Coates, Elizabeth H Mack, Katherine Irby, Julie C Fitzgerald, Courtney M Rowan, Michele Kong, Heidi R Flori, Aline B Maddux, Steven L Shein, Hillary Crandall, Janet R Hume, Charlotte V Hobbs, Adriana H Tremoulet, Chisato Shimizu, Jane C Burns, Sabrina R Chen, Hye Kyung Moon, Christoph Lange, Adrienne G Randolph, Surender Khurana | Nature Communications | 2022-05-27 |
| Fueling the fire in the gut. | Chia-Hao Lin, Li-Fan Lu | The Journal Of Experimental Medicine | 2022-05-27 |
| Humoral and cellular immune memory to four COVID-19 vaccines. | Zeli Zhang, Jose Mateus, Camila H Coelho, Jennifer M Dan, Carolyn Rydyznski Moderbacher, Rosa Isela Gálvez, Fernanda H Cortes, Alba Grifoni, Alison Tarke, James Chang, E Alexandar Escarrega, Christina Kim, Benjamin Goodwin, Nathaniel I Bloom, April Frazier, Daniela Weiskopf, Alessandro Sette, Shane Crotty | Cell | 2022-05-27 |
| What were the historical reasons for the resistance to recognizing airborne transmission during the COVID-19 pandemic? | Jose L Jimenez, Linsey C Marr, Katherine Randall, Edward Thomas Ewing, Zeynep Tufekci, Trish Greenhalgh, Raymond Tellier, Julian W Tang, Yuguo Li, Lidia Morawska, Jonathan Mesiano-Crookston, David Fisman, Orla Hegarty, Stephanie J Dancer, Philomena M Bluyssen, Giorgio Buonanno, Marcel G L C Loomans, William P Bahnfleth, Maosheng Yao, Chandra Sekhar, Pawel Wargocki, Arsen K Melikov, Kimberly A Prather | Indoor Air | 2022-05-25 |
| Maternal diet is associated with human milk oligosaccharide profile. | Marta Selma-Royo, Sonia González, Miguel Gueimonde, Melinda Chang, Annalee Fürst, Cecilia Martínez-Costa, Lars Bode, Maria Carmen Collado | Molecular Nutrition & Food Research | 2022-05-25 |
| The Ubiquitous Human Skin Commensal Staphylococcus hominis Protects against Opportunistic Pathogens. | Morgan M Severn, Michael R Williams, Ali Shahbandi, Zoie L Bunch, Laurie M Lyon, Amber Nguyen, Livia S Zaramela, Daniel A Todd, Karsten Zengler, Nadja B Cech, Richard L Gallo, Alexander R Horswill | MBio | 2022-05-24 |
| Demographic and clinical characteristics associated with variations in antibody response to BNT162b2 COVID-19 vaccination among healthcare workers at an academic medical centre: a longitudinal cohort analysis. | Joseph E Ebinger, Sandy Joung, Yunxian Liu, Min Wu, Brittany Weber, Brian Claggett, Patrick G Botting, Nancy Sun, Matthew Driver, Yu Hung Kao, Briana Khuu, Timothy Wynter, Trevor-Trung Nguyen, Mona Alotaibi, John C Prostko, Edwin C Frias, James L Stewart, Helen S Goodridge, Peter Chen, Stanley C Jordan, Mohit Jain, Sonia Sharma, Justyna Fert-Bober, Jennifer E Van Eyk, Margo B Minissian, Moshe Arditi, Gil Y Melmed, Jonathan G Braun, Dermot P B McGovern, Susan Cheng, Kimia Sobhani | BMJ Open | 2022-05-24 |
| A Prebiotic Diet Alters the Fecal Microbiome and Improves Sleep in Response to Sleep Disruption in Rats. | Samuel J Bowers, Keith C Summa, Robert S Thompson, Antonio González, Fernando Vargas, Christopher Olker, Peng Jiang, Christopher A Lowry, Pieter C Dorrestein, Rob Knight, Kenneth P Wright, Monika Fleshner, Fred W Turek, Martha H Vitaterna | Frontiers In Neuroscience | 2022-05-24 |
| Supporting the Art: Medication Adherence Patterns in Persons Prescribed Ingestible Sensor-enabled Oral Pre-Exposure Prophylaxis to Prevent Human Immunodeficiency Virus (HIV) Infection. | Sara H Browne, Florin Vaida, Anya Umlauf, Amanda J Tucker, Terrence F Blaschke, Constance A Benson | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-05-23 |
| Fine scale transitions of the microbiota and metabolome along the gastrointestinal tract of herbivorous fishes. | Wesley J Sparagon, Emily C Gentry, Jeremiah J Minich, Lisa Vollbrecht, Lieve M L Laurens, Eric E Allen, Neil A Sims, Pieter C Dorrestein, Linda Wegley Kelly, Craig E Nelson | Animal Microbiome | 2022-05-23 |
| Ancient plant-like terpene biosynthesis in corals. | Immo Burkhardt, Tristan de Rond, Percival Yang-Ting Chen, Bradley S Moore | Nature Chemical Biology | 2022-05-23 |
| Complex and unexpected outcomes of antibiotic therapy against a polymicrobial infection. | Lydia-Ann J Ghuneim, Ruma Raghuvanshi, Kerri A Neugebauer, Douglas V Guzior, Martin H Christian, Bella Schena, Jeremiah M Feiner, Alicia Castillo-Bahena, Jenna Mielke, Marc McClelland, Douglas Conrad, Isaac Klapper, Tianyu Zhang, Robert A Quinn | The ISME Journal | 2022-05-21 |
| Changes in the gut microbiome associated with liver stiffness improvement in nonalcoholic steatohepatitis. | Suzanne R Sharpton, Ondrej Podlaha, Jen-Chieh Chuang, Yevgeniy Gindin, Robert P Myers, Rohit Loomba | Therapeutic Advances In Gastroenterology | 2022-05-18 |
| Biosynthesis of Guanitoxin Enables Global Environmental Detection in Freshwater Cyanobacteria. | Stella T Lima, Timothy R Fallon, Jennifer L Cordoza, Jonathan R Chekan, Endrews Delbaje, Austin R Hopiavuori, Danillo O Alvarenga, Steffaney M Wood, Hanna Luhavaya, Jackson T Baumgartner, Felipe A Dörr, Augusto Etchegaray, Ernani Pinto, Shaun M K McKinnie, Marli F Fiore, Bradley S Moore | Journal Of The American Chemical Society | 2022-05-18 |
| Virologic and Immunologic Characterization of Coronavirus Disease 2019 Recrudescence After Nirmatrelvir/Ritonavir Treatment. | Aaron F Carlin, Alex E Clark, Antoine Chaillon, Aaron F Garretson, William Bray, Magali Porrachia, AsherLev T Santos, Tariq M Rana, Davey M Smith | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-05-16 |
| SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with sp. | Victor J Cantú, Rodolfo A Salido, Shi Huang, Gibraan Rahman, Rebecca Tsai, Holly Valentine, Celestine G Magallanes, Stefan Aigner, Nathan A Baer, Tom Barber, Pedro Belda-Ferre, Maryann Betty, MacKenzie Bryant, Martín Casas Maya, Anelizze Castro-Martínez, Marisol Chacón, Willi Cheung, Evelyn S Crescini, Peter De Hoff, Emily Eisner, Sawyer Farmer, Abbas Hakim, Laura Kohn, Alma L Lastrella, Elijah S Lawrence, Sydney C Morgan, Toan T Ngo, Alhakam Nouri, Ashley Plascencia, Christopher A Ruiz, Shashank Sathe, Phoebe Seaver, Tara Shwartz, Elizabeth W Smoot, R Tyler Ostrander, Thomas Valles, Gene W Yeo, Louise C Laurent, Rebecca Fielding-Miller, Rob Knight | MSystems | 2022-05-16 |
| Nitrite Generating and Depleting Capacity of the Oral Microbiome and Cardiometabolic Risk: Results from ORIGINS. | Charlene E Goh, Bruno Bohn, Clarisse Marotz, Rebecca Molinsky, Sumith Roy, Bruce J Paster, Ching-Yuan Chen, Michael Rosenbaum, Melana Yuzefpolskaya, Paolo C Colombo, Moïse Desvarieux, Panos N Papapanou, David R Jacobs, Rob Knight, Ryan T Demmer | Journal Of The American Heart Association | 2022-05-16 |
| An Artificial Intelligence-guided signature reveals the shared host immune response in MIS-C and Kawasaki disease. | Pradipta Ghosh, Gajanan D Katkar, Chisato Shimizu, Jihoon Kim, Soni Khandelwal, Adriana H Tremoulet, John T Kanegaye, , Joseph Bocchini, Soumita Das, Jane C Burns, Debashis Sahoo | Nature Communications | 2022-05-16 |
| Case Series of Successful Intravenous Immunoglobulin (IVIG) Treatment in 4 Pregnant Patients with Severe COVID-19-Induced Hypoxia. | Matthew Geriak, Dominic McGrosso, David J Gonzalez, Matthew Dehner, George Sakoulas | The American Journal Of Case Reports | 2022-05-14 |
| SARS-CoV-2 Seroconversion in an Adult Horse with Direct Contact to a COVID-19 Individual. | Nicola Pusterla, Antoine Chaillon, Caroline Ignacio, Davey M Smith, Samantha Barnum, Kaila O Y Lawton, Greg Smith, Bradley Pickering | Viruses | 2022-05-14 |
| Changes in Gut Microbiome Composition with Healthy Aging in Humans: Links to Vascular Endothelial Function. | Nathan Greenberg, Marissa L Burnsed-Torres, Antonio Gonzalez, Abigail G Casso, Kara L Lubieniecki, Brian P Ziemba, Matthew J Rossman, Emily C Adam, Michel Chonchol, Kevin P Davy, Rob Knight, Douglas R Seals, Vienna E Brunt | FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology | 2022-05-13 |
| Evaluation of Small Molecule Inhibitors of Pseudomonas Virulence factor LasB as Non-Traditional Immunotherapeutics. | Sophia R Chou, Doris L LaRock, Joshua Sun, Victor Nizet, Julia K Bohannon, Christopher N LaRock | FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology | 2022-05-13 |
| Insights from C. elegans into Microsporidia Biology and Host-Pathogen Relationships. | Eillen Tecle, Emily R Troemel | Experientia Supplementum (2012) | 2022-05-11 |
| Variation in Survival and Gut Microbiome Composition of Hatchery-Grown Native Oysters at Various Locations within the Puget Sound. | Emily Kunselman, Jeremiah J Minich, Micah Horwith, Jack A Gilbert, Eric E Allen | Microbiology Spectrum | 2022-05-10 |
| The Impact of Exclusive Enteral Nutrition on the Gut Microbiome of Children with Medical Complexity. | Julia Beauchamp-Walters, Gajender Aleti, Lourdes Herrera, Justine Debelius, Natalie Lima, Pritha Dalal, Suzi Hong, Rob Knight, Kyung E Rhee | JPEN. Journal Of Parenteral And Enteral Nutrition | 2022-05-08 |
| Clinical Features of Patients Hospitalized for All Routes of Anthrax, 1880-2018: A Systematic Review. | Katherine Hendricks, Marissa K Person, John S Bradley, Thitipong Mongkolrattanothai, Nathaniel Hupert, Peter Eichacker, Arthur M Friedlander, William A Bower | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-05-06 |
| Cerebrospinal Fluid Shunt Infections: A Multicenter Pediatric Study. | Alastair McAlpine, Joan L Robinson, Michelle Barton, Archana Balamohan, H Dele Davies, Gwenn Skar, Marie-Astrid Lefebvre, Ahmed Almadani, Dolores Freire, Nicole Le Saux, Jennifer Bowes, Jocelyn A Srigley, Patrick Passarelli, John Bradley, Sarah Khan, Rupeena Purewal, Isabelle Viel-Thériault, Adrianna Ranger, Michael T Hawkes, | The Pediatric Infectious Disease Journal | 2022-05-06 |
| Zebrafish: an underutilized tool for discovery in host-microbe interactions. | Alexandra Stream, Cressida A Madigan | Trends In Immunology | 2022-05-05 |
| A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli. | Irina A Rodionova, Ye Gao, Jonathan Monk, Ying Hefner, Nicholas Wong, Richard Szubin, Hyun Gyu Lim, Dmitry A Rodionov, Zhongge Zhang, Milton H Saier, Bernhard O Palsson | Scientific Reports | 2022-05-04 |
| Subcellular organization of viral particles during maturation of nucleus-forming jumbo phage. | Vorrapon Chaikeeratisak, Kanika Khanna, Katrina T Nguyen, MacKennon E Egan, Eray Enustun, Emily Armbruster, Jina Lee, Kit Pogliano, Elizabeth Villa, Joe Pogliano | Science Advances | 2022-05-04 |
| Author Correction: Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly. | Mahul Chakraborty, Arunachalam Ramaiah, Adriana Adolfi, Paige Halas, Bhagyashree Kaduskar, Luna Thanh Ngo, Suvratha Jayaprasad, Kiran Paul, Saurabh Whadgar, Subhashini Srinivasan, Suresh Subramani, Ethan Bier, Anthony A James, J J Emerson | BMC Biology | 2022-05-02 |
| Transcription Factor 4 loss-of-function is associated with deficits in progenitor proliferation and cortical neuron content. | Fabio Papes, Antonio P Camargo, Janaina S de Souza, Vinicius M A Carvalho, Ryan A Szeto, Erin LaMontagne, José R Teixeira, Simoni H Avansini, Sandra M Sánchez-Sánchez, Thiago S Nakahara, Carolina N Santo, Wei Wu, Hang Yao, Barbara M P Araújo, Paulo E N F Velho, Gabriel G Haddad, Alysson R Muotri | Nature Communications | 2022-05-02 |
| Localized electrical stimulation triggers cell-type-specific proliferation in biofilms. | Colin J Comerci, Alan L Gillman, Leticia Galera-Laporta, Edgar Gutierrez, Alex Groisman, Joseph W Larkin, Jordi Garcia-Ojalvo, Gürol M Süel | Cell Systems | 2022-05-02 |
| Blockade of organic anion transport in humans after treatment with the drug probenecid leads to major metabolic alterations in plasma and urine. | Jeffry C Granados, Vibha Bhatnagar, Sanjay K Nigam | Clinical Pharmacology And Therapeutics | 2022-05-01 |
| DEPP: Deep Learning Enables Extending Species Trees using Single Genes. | Yueyu Jiang, Metin Balaban, Qiyun Zhu, Siavash Mirarab | Systematic Biology | 2022-04-29 |
| Outcomes and risk factors for death among hospitalized children and adolescents with kidney diseases and COVID-19: an analysis of a nationwide database. | Mariana A Vasconcelos, Ana Carmen Q Mendonça, Enrico A Colosimo, Noureddin Nourbakhsh, Hercílio Martelli-Júnior, Ludmila R Silva, Maria Christina L Oliveira, Clara C Pinhati, Robert H Mak, Ana Cristina Simões E Silva, Eduardo A Oliveira | Pediatric Nephrology (Berlin, Germany) | 2022-04-29 |
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| Effects of 'Healthy' Fecal Microbiota Transplantation against the Deterioration of Depression in Fawn-Hooded Rats. | Bing Hu, Promi Das, Xianglin Lv, Meng Shi, Jiye Aa, Kun Wang, Liping Duan, Jack A Gilbert, Yong Nie, Xiao-Lei Wu | MSystems | 2022-04-28 |
| Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype. | Cameron Martino, Daniel McDonald, Kalen Cantrell, Amanda Hazel Dilmore, Yoshiki Vázquez-Baeza, Liat Shenhav, Justin P Shaffer, Gibraan Rahman, George Armstrong, Celeste Allaband, Se Jin Song, Rob Knight | MSystems | 2022-04-28 |
| Associations between maternal obesity and offspring gut microbiome in the first year of life. | Stephanie P Gilley, Meghan L Ruebel, Clark Sims, Ying Zhong, Donald Turner, Renny S Lan, Lindsay M Pack, Brian D Piccolo, Sree V Chintapalli, Ann Abraham, Lars Bode, Aline Andres, Kartik Shankar | Pediatric Obesity | 2022-04-27 |
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| Nutrient Gradients Mediate Complex Colony-Level Antibiotic Responses in Structured Microbial Populations. | Mirjana Stevanovic, Thomas Boukéké-Lesplulier, Lukas Hupe, Jeff Hasty, Philip Bittihn, Daniel Schultz | Frontiers In Microbiology | 2022-04-27 |
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| Comparative Genomics of Synechococcus elongatus Explains the Phenotypic Diversity of the Strains. | Marie Adomako, Dustin Ernst, Ryan Simkovsky, Yi-Yun Chao, Jingtong Wang, Mingxu Fang, Christiane Bouchier, Rocio Lopez-Igual, Didier Mazel, Muriel Gugger, Susan S Golden | MBio | 2022-04-27 |
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| Antibiotic Activity Altered by Competitive Interactions Between Two Coral Reef-Associated Bacteria. | Samantha J Mascuch, Alyssa Demko, Samson Viulu, Joape Ginigini, Katy Soapi, Paul Jensen, Julia Kubanek | Microbial Ecology | 2022-04-23 |
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| Menopause Is Associated with an Altered Gut Microbiome and Estrobolome, with Implications for Adverse Cardiometabolic Risk in the Hispanic Community Health Study/Study of Latinos. | Brandilyn A Peters, Juan Lin, Qibin Qi, Mykhaylo Usyk, Carmen R Isasi, Yasmin Mossavar-Rahmani, Carol A Derby, Nanette Santoro, Krista M Perreira, Martha L Daviglus, Michelle A Kominiarek, Jianwen Cai, Rob Knight, Robert D Burk, Robert C Kaplan | MSystems | 2022-04-13 |
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| Symptom improvement with mirabegron treatment is associated with urobiome changes in adult women. | Thomas Halverson, Elizabeth R Mueller, Linda Brubaker, Alan J Wolfe | International Urogynecology Journal | 2022-04-12 |
| P53 deficiency affects cholesterol esterification to exacerbate hepatocarcinogenesis. | Yahui Zhu, Li Gu, Xi Lin, Xinyi Zhou, Bingjun Lu, Cheng Liu, Yajun Li, Edward V Prochownik, Michael Karin, Fubing Wang, Youjun Li | Hepatology (Baltimore, Md.) | 2022-04-10 |
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| Sialoglycan binding patterns of bacterial AB toxin B subunits correlate with host range and toxicity, indicating evolution independent of A subunits. | Naazneen Khan, Aniruddha Sasmal, Zahra Khedri, Patrick Secrest, Andrea Verhagen, Saurabh Srivastava, Nissi Varki, Xi Chen, Hai Yu, Travis Beddoe, Adrienne W Paton, James C Paton, Ajit Varki | The Journal Of Biological Chemistry | 2022-04-07 |
| Microbe Profile: : natural products and the evolution of a unique marine bacterium. | Paul R Jensen | Microbiology (Reading, England) | 2022-04-05 |
| Involvement of Qa-1/HLA-E-Restricted CD8+ T Cells in Anti-Microbe and Anti-Cancer Immunity as Well as in Immune Regulation. | Huiming Sheng, Suryasarathi Dasgupta, Vipin Chaturvedi Kumar | Critical Reviews In Immunology | 2022-04-05 |
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| The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients. | Carlos G Gonzalez, Robert H Mills, Melissa C Kordahi, Marvic Carrillo-Terrazas, Henrry Secaira-Morocho, Christella E Widjaja, Matthew S Tsai, Yash Mittal, Brian A Yee, Fernando Vargas, Kelly Weldon, Julia M Gauglitz, Clara Delaroque, Consuelo Sauceda, Leigh-Ana Rossitto, Gail Ackermann, Gregory Humphrey, Austin D Swafford, Corey A Siegel, Jay C Buckey, Laura E Raffals, Charlotte Sadler, Peter Lindholm, Kathleen M Fisch, Mark Valaseck, Arief Suriawinata, Gene W Yeo, Pradipta Ghosh, John T Chang, Hiutung Chu, Pieter Dorrestein, Qiyun Zhu, Benoit Chassaing, Rob Knight, David J Gonzalez, Parambir S Dulai | Cellular And Molecular Gastroenterology And Hepatology | 2022-04-01 |
| Preserved SARS-CoV-2 Vaccine Cell-Mediated Immunogenicity in Patients With Inflammatory Bowel Disease on Immune-Modulating Therapies. | Brigid S Boland, Benjamin Goodwin, Zeli Zhang, Nathaniel Bloom, Yu Kato, Jennifer Neill, Helen Le, Tiffani Tysl, Angelina E Collins, Parambir S Dulai, Siddharth Singh, Nghia H Nguyen, Alba Grifoni, Alessandro Sette, Daniela Weiskopf, John T Chang, Jennifer M Dan | Clinical And Translational Gastroenterology | 2022-04-01 |
| Mistaken MIS-C: A Case Series of Bacterial Enteritis Mimicking MIS-C. | Zephyr D Dworsky, Jordan E Roberts, Mary Beth F Son, Adriana H Tremoulet, Jane W Newburger, Jane C Burns | The Pediatric Infectious Disease Journal | 2022-04-01 |
| Machine learning from Pseudomonas aeruginosa transcriptomes identifies independently modulated sets of genes associated with known transcriptional regulators. | Akanksha Rajput, Hannah Tsunemoto, Anand V Sastry, Richard Szubin, Kevin Rychel, Joseph Sugie, Joe Pogliano, Bernhard O Palsson | Nucleic Acids Research | 2022-03-31 |
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| Obesity alters pathology and treatment response in inflammatory disease. | Sagar P Bapat, Caroline Whitty, Cody T Mowery, Yuqiong Liang, Arum Yoo, Zewen Jiang, Michael C Peters, Ling-Juan Zhang, Ian Vogel, Carmen Zhou, Vinh Q Nguyen, Zhongmei Li, Christina Chang, Wandi S Zhu, Annette T Hastie, Helen He, Xin Ren, Wenli Qiu, Sarah G Gayer, Chang Liu, Eun Jung Choi, Marlys Fassett, Jarish N Cohen, Jamie L Sturgill, Laura E Crotty Alexander, Jae Myoung Suh, Christopher Liddle, Annette R Atkins, Ruth T Yu, Michael Downes, Sihao Liu, Barbara S Nikolajczyk, In-Kyu Lee, Emma Guttman-Yassky, K Mark Ansel, Prescott G Woodruff, John V Fahy, Dean Sheppard, Richard L Gallo, Chun Jimmie Ye, Ronald M Evans, Ye Zheng, Alexander Marson | Nature | 2022-03-30 |
| Metabolic Profiling of Interspecies Interactions During Sessile Bacterial Cultivation Reveals Growth and Sporulation Induction in in Response to . | Jakob Herschend, Madeleine Ernst, Klaus Koren, Alexey V Melnik, Ricardo R da Silva, Henriette L Røder, Zacharias B V Damholt, Per Hägglund, Birte Svensson, Søren J Sørensen, Michael Kühl, Pieter C Dorrestein, Mette Burmølle | Frontiers In Cellular And Infection Microbiology | 2022-03-29 |
| Synthetic 3'-UTR valves for optimal metabolic flux control in Escherichia coli. | Donghui Choe, Kangsan Kim, Minjeong Kang, Seung-Goo Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | Nucleic Acids Research | 2022-03-29 |
| Risk factors for COVID-19-related mortality in hospitalized children and adolescents with diabetes mellitus: An observational retrospective cohort study. | Eduardo A Oliveira, Robert H Mak, Enrico A Colosimo, Ana Carmen Q Mendonça, Mariana A Vasconcelos, Hercílio Martelli-Júnior, Ludmila R Silva, Maria Christina L Oliveira, Clara C Pinhati, Ana Cristina Simões E Silva | Pediatric Diabetes | 2022-03-27 |
| The ViReflow pipeline enables user friendly large scale viral consensus genome reconstruction. | Niema Moshiri, Kathleen M Fisch, Amanda Birmingham, Peter DeHoff, Gene W Yeo, Kristen Jepsen, Louise C Laurent, Rob Knight | Scientific Reports | 2022-03-24 |
| High Sensitivity, Rapid Detection of Virus in High Traffic Environments. | Lauren Waller, Zhilin Guo, Rui Tang, Zunming Zhang, Edward Wang, Jarred Yasuhara-Bell, Louise Laurent, Yu-Hwa Lo | Frontiers In Bioengineering And Biotechnology | 2022-03-24 |
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| Potent Activity of Ertapenem Plus Cefazolin Within Staphylococcal Biofilms: A Contributing Factor in the Treatment of Methicillin-Susceptible Endocarditis. | Jessica Gilbertie, Erlinda R Ulloa, Jennifer C Daiker, Khanh Nguyen, Dan Smelter, Warren Rose, Matthew Geriak, Lauren V Schnabel, Victor Nizet, George Sakoulas | Open Forum Infectious Diseases | 2022-03-23 |
| Early prediction of incident liver disease using conventional risk factors and gut-microbiome-augmented gradient boosting. | Yang Liu, Guillaume Méric, Aki S Havulinna, Shu Mei Teo, Fredrik Åberg, Matti Ruuskanen, Jon Sanders, Qiyun Zhu, Anupriya Tripathi, Karin Verspoor, Susan Cheng, Mohit Jain, Pekka Jousilahti, Yoshiki Vázquez-Baeza, Rohit Loomba, Leo Lahti, Teemu Niiranen, Veikko Salomaa, Rob Knight, Michael Inouye | Cell Metabolism | 2022-03-22 |
| Microbiomes of Hadal Fishes across Trench Habitats Contain Similar Taxa and Known Piezophiles. | Jessica M Blanton, Logan M Peoples, Mackenzie E Gerringer, Caroline M Iacuaniello, Natalya D Gallo, Thomas D Linley, Alan J Jamieson, Jeffrey C Drazen, Douglas H Bartlett, Eric E Allen | MSphere | 2022-03-21 |
| Machine Learning of All Mycobacterium tuberculosis H37Rv RNA-seq Data Reveals a Structured Interplay between Metabolism, Stress Response, and Infection. | Reo Yoo, Kevin Rychel, Saugat Poudel, Tahani Al-Bulushi, Yuan Yuan, Siddharth Chauhan, Cameron Lamoureux, Bernhard O Palsson, Anand Sastry | MSphere | 2022-03-21 |
| PI3K-α/mTOR/BRD4 inhibitor alone or in combination with other anti-virals blocks replication of SARS-CoV-2 and its variants of concern including Delta and Omicron. | Arpan Acharya, Anup S Pathania, Kabita Pandey, Michellie Thurman, Kendra R Vann, Tatiana G Kutateladze, Kishore B Challagundala, Donald L Durden, Siddappa N Byrareddy | Clinical And Translational Medicine | 2022-03-20 |
| Correction to: Precision medicine in perinatal depression in light of the human microbiome. | Beatriz Peñalver Bernabé, Pauline M Maki, Shannon M Dowty, Mariana Lauren Cralle Salas, Zainab Shah, Jack A Gilbert | Psychopharmacology | 2022-03-18 |
| Age-associated impairment of T cell immunity is linked to sex-dimorphic elevation of N-glycan branching. | Haik Mkhikian, Ken L Hayama, Khachik Khachikyan, Carey Li, Raymond W Zhou, Judy Pawling, Suzi Klaus, Phuong Q N Tran, Kim M Ly, Andrew D Gong, Hayk Saryan, Jasper L Hai, David Grigoryan, Philip L Lee, Barbara L Newton, Manuela Raffatellu, James W Dennis, Michael Demetriou | Nature Aging | 2022-03-18 |
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| What If Not All Metabolites from the Uremic Toxin Generating Pathways Are Toxic? A Hypothesis. | Raymond Vanholder, Sanjay K Nigam, Stéphane Burtey, Griet Glorieux | Toxins | 2022-03-17 |
| Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases. | George Armstrong, Cameron Martino, Justin Morris, Behnam Khaleghi, Jaeyoung Kang, Jeff DeReus, Qiyun Zhu, Daniel Roush, Daniel McDonald, Antonio Gonazlez, Justin P Shaffer, Carolina Carpenter, Mehrbod Estaki, Stephen Wandro, Sean Eilert, Ameen Akel, Justin Eno, Ken Curewitz, Austin D Swafford, Niema Moshiri, Tajana Rosing, Rob Knight | MSystems | 2022-03-16 |
| Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides. | Gajender Aleti, Jordan N Kohn, Emily A Troyer, Kelly Weldon, Shi Huang, Anupriya Tripathi, Pieter C Dorrestein, Austin D Swafford, Rob Knight, Suzi Hong | BMC Microbiology | 2022-03-14 |
| Autoantibodies Against Proteins Previously Associated With Autoimmunity in Adult and Pediatric Patients With COVID-19 and Children With MIS-C. | Peter D Burbelo, Riccardo Castagnoli, Chisato Shimizu, Ottavia M Delmonte, Kerry Dobbs, Valentina Discepolo, Andrea Lo Vecchio, Alfredo Guarino, Francesco Licciardi, Ugo Ramenghi, Emma Rey-Jurado, Cecilia Vial, Gian Luigi Marseglia, Amelia Licari, Daniela Montagna, Camillo Rossi, Gina A Montealegre Sanchez, Karyl Barron, Blake M Warner, John A Chiorini, Yazmin Espinosa, Loreani Noguera, Lesia Dropulic, Meng Truong, Dana Gerstbacher, Sayonara Mató, John Kanegaye, Adriana H Tremoulet, , Eli M Eisenstein, Helen C Su, Luisa Imberti, Maria Cecilia Poli, Jane C Burns, Luigi D Notarangelo, Jeffrey I Cohen | Frontiers In Immunology | 2022-03-11 |
| Structure and Candidate Biosynthetic Gene Cluster of a Manumycin-Type Metabolite from . | Gabriel Castro-Falcón, Kaitlin E Creamer, Alexander B Chase, Min Cheol Kim, Douglas Sweeney, Evgenia Glukhov, William Fenical, Paul R Jensen | Journal Of Natural Products | 2022-03-09 |
| Cancer's second genome: Microbial cancer diagnostics and redefining clonal evolution as a multispecies process: Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution: Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution. | Gregory D Sepich-Poore, Caitlin Guccione, Lucie Laplane, Thomas Pradeu, Kit Curtius, Rob Knight | BioEssays : News And Reviews In Molecular, Cellular And Developmental Biology | 2022-03-06 |
| Human Milk Oligosaccharides and Bacterial Profile Modulate Infant Body Composition during Exclusive Breastfeeding. | Ali S Cheema, Zoya Gridneva, Annalee J Furst, Ana S Roman, Michelle L Trevenen, Berwin A Turlach, Ching T Lai, Lisa F Stinson, Lars Bode, Matthew S Payne, Donna T Geddes | International Journal Of Molecular Sciences | 2022-03-05 |
| Exclusively Breastfed Infant Microbiota Develops over Time and Is Associated with Human Milk Oligosaccharide Intakes. | Ali Sadiq Cheema, Michelle Louise Trevenen, Berwin Ashoka Turlach, Annalee June Furst, Ana Sophia Roman, Lars Bode, Zoya Gridneva, Ching Tat Lai, Lisa Faye Stinson, Matthew Scott Payne, Donna Tracy Geddes | International Journal Of Molecular Sciences | 2022-03-03 |
| Landscape of HIV neutralization susceptibilities across tissue reservoirs. | Chuangqi Wang, Timothy E Schlub, Wen-Han Yu, C Sabrina Tan, Karl Stefic, Sara Gianella, Davey M Smith, Douglas A Lauffenburger, Antoine Chaillon, Boris Julg | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-03-02 |
| Detection of COVID-19 using multimodal data from a wearable device: results from the first TemPredict Study. | Ashley E Mason, Frederick M Hecht, Shakti K Davis, Joseph L Natale, Wendy Hartogensis, Natalie Damaso, Kajal T Claypool, Stephan Dilchert, Subhasis Dasgupta, Shweta Purawat, Varun K Viswanath, Amit Klein, Anoushka Chowdhary, Sarah M Fisher, Claudine Anglo, Karena Y Puldon, Danou Veasna, Jenifer G Prather, Leena S Pandya, Lindsey M Fox, Michael Busch, Casey Giordano, Brittany K Mercado, Jining Song, Rafael Jaimes, Brian S Baum, Brian A Telfer, Casandra W Philipson, Paula P Collins, Adam A Rao, Edward J Wang, Rachel H Bandi, Bianca J Choe, Elissa S Epel, Stephen K Epstein, Joanne B Krasnoff, Marco B Lee, Shi-Wen Lee, Gina M Lopez, Arpan Mehta, Laura D Melville, Tiffany S Moon, Lilianne R Mujica-Parodi, Kimberly M Noel, Michael A Orosco, Jesse M Rideout, Janet D Robishaw, Robert M Rodriguez, Kaushal H Shah, Jonathan H Siegal, Amarnath Gupta, Ilkay Altintas, Benjamin L Smarr | Scientific Reports | 2022-03-02 |
| Immune Response of an Oral Phage Cocktail in a Mouse Model of Ethanol-Induced Liver Disease. | Beatriz Garcia Mendes, Yi Duan, Bernd Schnabl | Viruses | 2022-02-27 |
| System-Level Analysis of Transcriptional and Translational Regulatory Elements in . | Soonkyu Hwang, Namil Lee, Donghui Choe, Yongjae Lee, Woori Kim, Ji Hun Kim, Gahyeon Kim, Hyeseong Kim, Neung-Ho Ahn, Byoung-Hee Lee, Bernhard O Palsson, Byung-Kwan Cho | Frontiers In Bioengineering And Biotechnology | 2022-02-25 |
| The Microbiota-Gut-Brain Axis in Alzheimer's Disease: A Review of Taxonomic Alterations and Potential Avenues for Interventions. | Emily R Murray, Mylon Kemp, Tanya T Nguyen | Archives Of Clinical Neuropsychology : The Official Journal Of The National Academy Of Neuropsychologists | 2022-02-24 |
| Applications and Comparison of Dimensionality Reduction Methods for Microbiome Data. | George Armstrong, Gibraan Rahman, Cameron Martino, Daniel McDonald, Antonio Gonzalez, Gal Mishne, Rob Knight | Frontiers In Bioinformatics | 2022-02-24 |
| viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data. | Dmitry Antipov, Mikhail Rayko, Mikhail Kolmogorov, Pavel A Pevzner | Genome Biology | 2022-02-21 |
| Deoxyvasicinone with Anti-Melanogenic Activity from Marine-Derived sp. CNQ-617. | Se-Eun Lee, Min-Ju Kim, Prima F Hillman, Dong-Chan Oh, William Fenical, Sang-Jip Nam, Kyung-Min Lim | Marine Drugs | 2022-02-21 |
| Viral protein instability enhances host-range evolvability. | Hannah M Strobel, Elijah K Horwitz, Justin R Meyer | PLoS Genetics | 2022-02-17 |
| Intestinal secretory mechanisms and diarrhea. | Stephen Joseph Keely, Kim E Barrett | American Journal Of Physiology. Gastrointestinal And Liver Physiology | 2022-02-16 |
| Antimicrobial production by perifollicular dermal preadipocytes is essential to the pathophysiology of acne. | Alan M O'Neill, Marc C Liggins, Jason S Seidman, Tran H Do, Fengwu Li, Kellen J Cavagnero, Tatsuya Dokoshi, Joyce Y Cheng, Faiza Shafiq, Tissa R Hata, Johann E Gudjonsson, Robert L Modlin, Richard L Gallo | Science Translational Medicine | 2022-02-16 |
| Higher buccal mitochondrial DNA and mitochondrial common deletion number are associated with markers of neurodegeneration and inflammation in cerebrospinal fluid. | Dipesh Solanky, Jerel A Fields, Jennifer E Iudicello, Ronald J Ellis, Donald Franklin, David B Clifford, Benjamin B Gelman, Christina M Marra, Susan Morgello, Leah H Rubin, Igor Grant, Robert K Heaton, Scott L Letendre, Sanjay R Mehta | Journal Of Neurovirology | 2022-02-14 |
| A gut-derived metabolite alters brain activity and anxiety behaviour in mice. | Brittany D Needham, Masanori Funabashi, Mark D Adame, Zhuo Wang, Joseph C Boktor, Jillian Haney, Wei-Li Wu, Claire Rabut, Mark S Ladinsky, Son-Jong Hwang, Yumei Guo, Qiyun Zhu, Jessica A Griffiths, Rob Knight, Pamela J Bjorkman, Mikhail G Shapiro, Daniel H Geschwind, Daniel P Holschneider, Michael A Fischbach, Sarkis K Mazmanian | Nature | 2022-02-14 |
| Adaptive laboratory evolution in S. cerevisiae highlights role of transcription factors in fungal xenobiotic resistance. | Sabine Ottilie, Madeline R Luth, Erich Hellemann, Gregory M Goldgof, Eddy Vigil, Prianka Kumar, Andrea L Cheung, Miranda Song, Karla P Godinez-Macias, Krypton Carolino, Jennifer Yang, Gisel Lopez, Matthew Abraham, Maureen Tarsio, Emmanuelle LeBlanc, Luke Whitesell, Jake Schenken, Felicia Gunawan, Reysha Patel, Joshua Smith, Melissa S Love, Roy M Williams, Case W McNamara, William H Gerwick, Trey Ideker, Yo Suzuki, Dyann F Wirth, Amanda K Lukens, Patricia M Kane, Leah E Cowen, Jacob D Durrant, Elizabeth A Winzeler | Communications Biology | 2022-02-11 |
| From Tryptophan to Toxin: Nature's Convergent Biosynthetic Strategy to Aetokthonotoxin. | Sanjoy Adak, April L Lukowski, Rebecca J B Schäfer, Bradley S Moore | Journal Of The American Chemical Society | 2022-02-10 |
| Efficient in vitro and in vivo RNA editing via recruitment of endogenous ADARs using circular guide RNAs. | Dhruva Katrekar, James Yen, Yichen Xiang, Anushka Saha, Dario Meluzzi, Yiannis Savva, Prashant Mali | Nature Biotechnology | 2022-02-10 |
| Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA. | Erik N Bergstrom, Jens Luebeck, Mia Petljak, Azhar Khandekar, Mark Barnes, Tongwu Zhang, Christopher D Steele, Nischalan Pillay, Maria Teresa Landi, Vineet Bafna, Paul S Mischel, Reuben S Harris, Ludmil B Alexandrov | Nature | 2022-02-09 |
| Machine Learning Predicts Biogeochemistry from Microbial Community Structure in a Complex Model System. | Avishek Dutta, Thomas Goldman, Jeffrey Keating, Ellen Burke, Nicole Williamson, Reinhard Dirmeier, Jeff S Bowman | Microbiology Spectrum | 2022-02-09 |
| Development of a T cell-based immunodiagnostic system to effectively distinguish SARS-CoV-2 infection and COVID-19 vaccination status. | Esther Dawen Yu, Eric Wang, Emily Garrigan, Benjamin Goodwin, Aaron Sutherland, Alison Tarke, James Chang, Rosa Isela Gálvez, Jose Mateus, Sydney I Ramirez, Stephen A Rawlings, Davey M Smith, Gilberto Filaci, April Frazier, Daniela Weiskopf, Jennifer M Dan, Shane Crotty, Alba Grifoni, Alessandro Sette, Ricardo da Silva Antunes | Cell Host & Microbe | 2022-02-08 |
| Targeted isolation of panels of diverse human protective broadly neutralizing antibodies against SARS-like viruses. | Wan-Ting He, Rami Musharrafieh, Ge Song, Katharina Dueker, Longping V Tse, David R Martinez, Alexandra Schäfer, Sean Callaghan, Peter Yong, Nathan Beutler, Jonathan L Torres, Reid M Volk, Panpan Zhou, Meng Yuan, Hejuni Liu, Fabio Anzanello, Tazio Capozzola, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, Ian A Wilson, Yana Safonova, Andrew B Ward, Thomas F Rogers, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees Andrabi | BioRxiv : The Preprint Server For Biology | 2022-02-08 |
| A human antibody reveals a conserved site on beta-coronavirus spike proteins and confers protection against SARS-CoV-2 infection. | Panpan Zhou, Meng Yuan, Ge Song, Nathan Beutler, Namir Shaabani, Deli Huang, Wan-Ting He, Xueyong Zhu, Sean Callaghan, Peter Yong, Fabio Anzanello, Linghang Peng, James Ricketts, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, David Nemazee, John R Teijaro, Thomas F Rogers, Ian A Wilson, Dennis R Burton, Raiees Andrabi | Science Translational Medicine | 2022-02-08 |
| Regulatory perturbations of ribosome allocation in bacteria reshape the growth proteome with a trade-off in adaptation capacity. | David Hidalgo, César A Martínez-Ortiz, Bernhard O Palsson, José I Jiménez, José Utrilla | IScience | 2022-02-07 |
| Altered Carbon Partitioning Enhances CO to Terpene Conversion in Cyanobacteria. | Man Li, Bin Long, Susie Y Dai, James W Golden, Xin Wang, Joshua S Yuan | Biodesign Research | 2022-02-07 |
| Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort. | Youwen Qin, Aki S Havulinna, Yang Liu, Pekka Jousilahti, Scott C Ritchie, Alex Tokolyi, Jon G Sanders, Liisa Valsta, Marta Brożyńska, Qiyun Zhu, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Rohit Loomba, Susan Cheng, Mohit Jain, Teemu Niiranen, Leo Lahti, Rob Knight, Veikko Salomaa, Michael Inouye, Guillaume Méric | Nature Genetics | 2022-02-03 |
| A potentially probiotic strain of Enterococcus faecalis from human milk that is avirulent, antibiotic sensitive, and nonbreaching of the gut barrier. | Jasia Anjum, Arsalan Zaidi, Kim Barrett, Muhammad Tariq | Archives Of Microbiology | 2022-02-02 |
| Flux balance analysis of the ammonia-oxidizing bacterium Nitrosomonas europaea ATCC19718 unravels specific metabolic activities while degrading toxic compounds. | Gabriela Canto-Encalada, Diego Tec-Campos, Juan D Tibocha-Bonilla, Karsten Zengler, Alejandro Zepeda, Cristal Zuñiga | PLoS Computational Biology | 2022-02-02 |
| Salmonella respiration turns the tables on propionate. | Gregory T Walker, Manuela Raffatellu | Trends In Microbiology | 2022-02-02 |
| Editorial: Mast Cells: Bridging Host-Microorganism Interactions. | Rommel Chacón-Salinas, Anna Di Nardo, Soman N Abraham | Frontiers In Immunology | 2022-01-31 |
| Gut Microbiome Composition Is Predictive of Incident Type 2 Diabetes in a Population Cohort of 5,572 Finnish Adults. | Matti O Ruuskanen, Pande P Erawijantari, Aki S Havulinna, Yang Liu, Guillaume Méric, Jaakko Tuomilehto, Michael Inouye, Pekka Jousilahti, Veikko Salomaa, Mohit Jain, Rob Knight, Leo Lahti, Teemu J Niiranen | Diabetes Care | 2022-01-31 |
| Using All Our Genomes: Blood-based Liquid Biopsies for the Early Detection of Cancer. | Eddie Adams, Gregory D Sepich-Poore, Sandrine Miller-Montgomery, Rob Knight | View (Beijing, China) | 2022-01-31 |
| Identification of Leucinostatins from sp. as Antiparasitic Agents against . | Jean A Bernatchez, Yun-Seo Kil, Elany Barbosa da Silva, Diane Thomas, Laura-Isobel McCall, Karen L Wendt, Julia M Souza, Jasmin Ackermann, James H McKerrow, Robert H Cichewicz, Jair L Siqueira-Neto | ACS Omega | 2022-01-28 |
| Leapfrog dynamics in phage-bacteria coevolution revealed by joint analysis of cross-infection phenotypes and whole genome sequencing. | Animesh Gupta, Shengyun Peng, Chung Yin Leung, Joshua M Borin, Sarah J Medina, Joshua S Weitz, Justin R Meyer | Ecology Letters | 2022-01-28 |
| Accumulation of microbial DNAs promotes to islet inflammation and β cell abnormalities in obesity in mice. | Hong Gao, Zhenlong Luo, Yudong Ji, Kechun Tang, Zhongmou Jin, Crystal Ly, Dorothy D Sears, Sushil Mahata, Wei Ying | Nature Communications | 2022-01-28 |
| Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity. | Robert H Mills, Parambir S Dulai, Yoshiki Vázquez-Baeza, Consuelo Sauceda, Noëmie Daniel, Romana R Gerner, Lakshmi E Batachari, Mario Malfavon, Qiyun Zhu, Kelly Weldon, Greg Humphrey, Marvic Carrillo-Terrazas, Lindsay DeRight Goldasich, MacKenzie Bryant, Manuela Raffatellu, Robert A Quinn, Andrew T Gewirtz, Benoit Chassaing, Hiutung Chu, William J Sandborn, Pieter C Dorrestein, Rob Knight, David J Gonzalez | Nature Microbiology | 2022-01-27 |
| Predicting fungal infection rate and severity with skin-associated microbial communities on amphibians. | Melissa Y Chen, Jordan G Kueneman, Antonio González, Greg Humphrey, Rob Knight, Valerie J McKenzie | Molecular Ecology | 2022-01-25 |
| Interactions between human milk oligosaccharides, microbiota and immune factors in milk of women with and without mastitis. | Irma Castro, Cristina García-Carral, Annalee Furst, Sadaf Khwajazada, Janneiry García, Rebeca Arroyo, Lorena Ruiz, Juan M Rodríguez, Lars Bode, Leónides Fernández | Scientific Reports | 2022-01-25 |
| SARS-CoV-2 vaccination induces immunological T cell memory able to cross-recognize variants from Alpha to Omicron. | Alison Tarke, Camila H Coelho, Zeli Zhang, Jennifer M Dan, Esther Dawen Yu, Nils Methot, Nathaniel I Bloom, Benjamin Goodwin, Elizabeth Phillips, Simon Mallal, John Sidney, Gilberto Filaci, Daniela Weiskopf, Ricardo da Silva Antunes, Shane Crotty, Alba Grifoni, Alessandro Sette | Cell | 2022-01-24 |
| Stenotrophomonas maltophilia in patients with bronchiectasis: An analysis of the US bronchiectasis and NTM Research Registry. | Mark L Metersky, Radmila Choate, Timothy R Aksamit, Douglas Conrad, Nicole C Lapinel, Diego J Maselli, Pamela J McShane | Respiratory Medicine | 2022-01-24 |
| Colesevelam ameliorates non-alcoholic steatohepatitis and obesity in mice. | Phillipp Hartmann, Yi Duan, Yukiko Miyamoto, Münevver Demir, Sonja Lang, Elda Hasa, Patrick Stern, Dennis Yamashita, Mary Conrad, Lars Eckmann, Bernd Schnabl | Hepatology International | 2022-01-24 |
| Genome-scale analysis of genetic regulatory elements in Streptomyces avermitilis MA-4680 using transcript boundary information. | Yongjae Lee, Namil Lee, Soonkyu Hwang, Woori Kim, Suhyung Cho, Bernhard O Palsson, Byung-Kwan Cho | BMC Genomics | 2022-01-21 |
| Isolation and characterization of Streptomyces bacteriophages and Streptomyces strains encoding biosynthetic arsenals. | Elizabeth T Montaño, Jason F Nideffer, Lauren Brumage, Marcella Erb, Julia Busch, Lynley Fernandez, Alan I Derman, John Paul Davis, Elena Estrada, Sharon Fu, Danielle Le, Aishwarya Vuppala, Cassidy Tran, Elaine Luterstein, Shivani Lakkaraju, Sriya Panchagnula, Caroline Ren, Jennifer Doan, Sharon Tran, Jamielyn Soriano, Yuya Fujita, Pranathi Gutala, Quinn Fujii, Minda Lee, Anthony Bui, Carleen Villarreal, Samuel R Shing, Sean Kim, Danielle Freeman, Vipula Racha, Alicia Ho, Prianka Kumar, Kian Falah, Thomas Dawson, Eray Enustun, Amy Prichard, Ana Gomez, Kanika Khanna, Shelly Trigg, Kit Pogliano, Joe Pogliano | PloS One | 2022-01-21 |
| Ethical Considerations for Gene Drive: Challenges of Balancing Inclusion, Power and Perspectives. | Ana Kormos, Gregory C Lanzaro, Ethan Bier, Vanilson Santos, Lodney Nazaré, João Pinto, Adionilde Aguiar Dos Santos, Anthony A James | Frontiers In Bioengineering And Biotechnology | 2022-01-21 |
| A human antibody reveals a conserved site on beta-coronavirus spike proteins and confers protection against SARS-CoV-2 infection. | Panpan Zhou, Meng Yuan, Ge Song, Nathan Beutler, Namir Shaabani, Deli Huang, Wan-Ting He, Xueyong Zhu, Sean Callaghan, Peter Yong, Fabio Anzanello, Linghang Peng, James Ricketts, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, David Nemazee, John R Teijaro, Thomas F Rogers, Ian A Wilson, Dennis R Burton, Raiees Andrabi | BioRxiv : The Preprint Server For Biology | 2022-01-21 |
| No infectious SARS-CoV-2 in breast milk from a cohort of 110 lactating women. | Paul Krogstad, Deisy Contreras, Hwee Ng, Nicole Tobin, Christina D Chambers, Kerri Bertrand, Lars Bode, Grace M Aldrovandi | Pediatric Research | 2022-01-19 |
| From structure to sequence: Antibody discovery using cryoEM. | Aleksandar Antanasijevic, Charles A Bowman, Robert N Kirchdoerfer, Christopher A Cottrell, Gabriel Ozorowski, Amit A Upadhyay, Kimberly M Cirelli, Diane G Carnathan, Chiamaka A Enemuo, Leigh M Sewall, Bartek Nogal, Fangzhu Zhao, Bettina Groschel, William R Schief, Devin Sok, Guido Silvestri, Shane Crotty, Steven E Bosinger, Andrew B Ward | Science Advances | 2022-01-19 |
| Why sequence all eukaryotes? | Mark Blaxter, John M Archibald, Anna K Childers, Jonathan A Coddington, Keith A Crandall, Federica Di Palma, Richard Durbin, Scott V Edwards, Jennifer A M Graves, Kevin J Hackett, Neil Hall, Erich D Jarvis, Rebecca N Johnson, Elinor K Karlsson, W John Kress, Shigehiro Kuraku, Mara K N Lawniczak, Kerstin Lindblad-Toh, Jose V Lopez, Nancy A Moran, Gene E Robinson, Oliver A Ryder, Beth Shapiro, Pamela S Soltis, Tandy Warnow, Guojie Zhang, Harris A Lewin | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-01-19 |
| The Earth BioGenome Project 2020: Starting the clock. | Harris A Lewin, Stephen Richards, Erez Lieberman Aiden, Miguel L Allende, John M Archibald, Miklós Bálint, Katharine B Barker, Bridget Baumgartner, Katherine Belov, Giorgio Bertorelle, Mark L Blaxter, Jing Cai, Nicolette D Caperello, Keith Carlson, Juan Carlos Castilla-Rubio, Shu-Miaw Chaw, Lei Chen, Anna K Childers, Jonathan A Coddington, Dalia A Conde, Montserrat Corominas, Keith A Crandall, Andrew J Crawford, Federica DiPalma, Richard Durbin, ThankGod E Ebenezer, Scott V Edwards, Olivier Fedrigo, Paul Flicek, Giulio Formenti, Richard A Gibbs, M Thomas P Gilbert, Melissa M Goldstein, Jennifer Marshall Graves, Henry T Greely, Igor V Grigoriev, Kevin J Hackett, Neil Hall, David Haussler, Kristofer M Helgen, Carolyn J Hogg, Sachiko Isobe, Kjetill Sigurd Jakobsen, Axel Janke, Erich D Jarvis, Warren E Johnson, Steven J M Jones, Elinor K Karlsson, Paul J Kersey, Jin-Hyoung Kim, W John Kress, Shigehiro Kuraku, Mara K N Lawniczak, James H Leebens-Mack, Xueyan Li, Kerstin Lindblad-Toh, Xin Liu, Jose V Lopez, Tomas Marques-Bonet, Sophie Mazard, Jonna A K Mazet, Camila J Mazzoni, Eugene W Myers, Rachel J O'Neill, Sadye Paez, Hyun Park, Gene E Robinson, Cristina Roquet, Oliver A Ryder, Jamal S M Sabir, H Bradley Shaffer, Timothy M Shank, Jacob S Sherkow, Pamela S Soltis, Boping Tang, Leho Tedersoo, Marcela Uliano-Silva, Kun Wang, Xiaofeng Wei, Regina Wetzer, Julia L Wilson, Xun Xu, Huanming Yang, Anne D Yoder, Guojie Zhang | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-01-19 |
| Correction to: Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers. | Qiyun Zhu, Qiangchuan Hou, Shi Huang, Qianying Ou, Dongxue Huo, Yoshiki Vázquez-Baeza, Chaoping Cen, Victor Cantu, Mehrbod Estaki, Haibo Chang, Pedro Belda-Ferre, Ho-Cheol Kim, Kaining Chen, Rob Knight, Jiachao Zhang | The ISME Journal | 2022-01-18 |
| Considerations for the Use of Phage Therapy in Clinical Practice. | Gina A Suh, Thomas P Lodise, Pranita D Tamma, Jane M Knisely, Jose Alexander, Saima Aslam, Karen D Barton, Erica Bizzell, Katherine M C Totten, Joseph Campbell, Benjamin K Chan, Scott A Cunningham, Katherine E Goodman, Kerryl Greenwood-Quaintance, Anthony D Harris, Shayla Hesse, Anthony Maresso, Veronique Nussenblatt, David Pride, Michael Rybak, Zoe Sund, David Van Duin, Daria Van Tyne, Robin Patel, | Antimicrobial Agents And Chemotherapy | 2022-01-18 |
| Liver specific, systemic and genetic contributors to alcohol-related liver disease progression. | Bernd Schnabl, Gavin E Arteel, Felix Stickel, Jan Hengstler, Nachiket Vartak, Ahmed Ghallab, Steven Dooley, Yujia Li, Robert F Schwabe | Zeitschrift Fur Gastroenterologie | 2022-01-18 |
| Neuronally-enriched exosomal microRNA-27b mediates acute effects of ibuprofen on reward-related brain activity in healthy adults: a randomized, placebo-controlled, double-blind trial. | Kaiping Burrows, Leandra K Figueroa-Hall, Rayus Kuplicki, Jennifer L Stewart, Ahlam M Alarbi, Rajagopal Ramesh, Jonathan B Savitz, T Kent Teague, Victoria B Risbrough, Martin P Paulus | Scientific Reports | 2022-01-17 |
| Conceptual strategies for characterizing interactions in microbial communities. | Sho M Kodera, Promi Das, Jack A Gilbert, Holly L Lutz | IScience | 2022-01-15 |
| A Charge-Switchable Zwitterionic Peptide for Rapid Detection of SARS-CoV-2 Main Protease. | Zhicheng Jin, Yash Mantri, Maurice Retout, Yong Cheng, Jiajing Zhou, Alec Jorns, Pavla Fajtova, Wonjun Yim, Colman Moore, Ming Xu, Matthew N Creyer, Raina M Borum, Jingcheng Zhou, Zhuohong Wu, Tengyu He, William F Penny, Anthony J O'Donoghue, Jesse V Jokerst | Angewandte Chemie (International Ed. In English) | 2022-01-14 |
| A Dual-Color Fluorescent Probe Allows Simultaneous Imaging of Main and Papain-like Proteases of SARS-CoV-2-Infected Cells for Accurate Detection and Rapid Inhibitor Screening. | Yong Cheng, Raina M Borum, Alex E Clark, Zhicheng Jin, Colman Moore, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Jesse V Jokerst | Angewandte Chemie (International Ed. In English) | 2022-01-14 |
| Gestational insulin resistance is mediated by the gut microbiome-indoleamine 2,3-dioxygenase axis. | Medha Priyadarshini, Guadalupe Navarro, Derek J Reiman, Anukriti Sharma, Kai Xu, Kristen Lednovich, Christopher R Manzella, Md Wasim Khan, Mariana Salas Garcia, Sarah Allard, Barton Wicksteed, George E Chlipala, Barbara Szynal, Beatriz Penalver Bernabe, Pauline M Maki, Ravinder K Gill, Gary H Perdew, Jack Gilbert, Yang Dai, Brian T Layden | Gastroenterology | 2022-01-12 |
| Structure and dynamics of SARS-CoV-2 proofreading exoribonuclease ExoN. | Nicholas H Moeller, Ke Shi, Özlem Demir, Christopher Belica, Surajit Banerjee, Lulu Yin, Cameron Durfee, Rommie E Amaro, Hideki Aihara | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-01-11 |
| Comparison of the First and Second Waves of the Coronavirus Disease 2019 Pandemic in Children and Adolescents in a Middle-Income Country: Clinical Impact Associated with Severe Acute Respiratory Syndrome Coronavirus 2 Gamma Lineage. | Eduardo A Oliveira, Ana Cristina Simões E Silva, Maria Christina L Oliveira, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Debora M Miranda, Daniella B Martelli, Ludmila R Silva, Clara C Pinhati, Hercílio Martelli-Júnior | The Journal Of Pediatrics | 2022-01-11 |
| Optical genome mapping identifies rare structural variations as predisposition factors associated with severe COVID-19. | Nikhil Shri Sahajpal, Chi-Yu Jill Lai, Alex Hastie, Ashis K Mondal, Siavash Raeisi Dehkordi, Caspar I van der Made, Olivier Fedrigo, Farooq Al-Ajli, Sawan Jalnapurkar, Marta Byrska-Bishop, Rashmi Kanagal-Shamanna, Brynn Levy, Maximilian Schieck, Thomas Illig, Silviu-Alin Bacanu, Janet S Chou, Adrienne G Randolph, Amyn M Rojiani, Michael C Zody, Catherine A Brownstein, Alan H Beggs, Vineet Bafna, Erich D Jarvis, Alexander Hoischen, Alka Chaubey, Ravindra Kolhe, | IScience | 2022-01-10 |
| The transcription factor ZIP-1 promotes resistance to intracellular infection in Caenorhabditis elegans. | Vladimir Lažetić, Fengting Wu, Lianne B Cohen, Kirthi C Reddy, Ya-Ting Chang, Spencer S Gang, Gira Bhabha, Emily R Troemel | Nature Communications | 2022-01-10 |
| Inhibition of histamine accumulation by novel histamine-degrading species of sp. isolated from goats and sheep milk. | Safoora Pashangeh, Seyed Shahram Shekarforoush, Mahmoud Aminlari, Saeid Hosseinzadeh, Victor Nizet, Samira Dahesh, Samane Rahmdel | Food Science & Nutrition | 2022-01-09 |
| Comparative Analysis of T Cell Spatial Proteomics and the Influence of HIV Expression. | Aaron L Oom, Charlotte A Stoneham, Mary K Lewinski, Alicia Richards, Jacob M Wozniak, Km Shams-Ud-Doha, David J Gonzalez, Nevan J Krogan, John Guatelli | Molecular & Cellular Proteomics : MCP | 2022-01-08 |
| Roles for the Mycobiome in Liver Disease. | Suling Zeng, Bernd Schnabl | Liver International : Official Journal Of The International Association For The Study Of The Liver | 2022-01-07 |
| An intestinally secreted host factor promotes microsporidia invasion of . | Hala Tamim El Jarkass, Calvin Mok, Michael R Schertzberg, Andrew G Fraser, Emily R Troemel, Aaron W Reinke | ELife | 2022-01-07 |
| A machine-learning algorithm for diagnosis of multisystem inflammatory syndrome in children and Kawasaki disease in the USA: a retrospective model development and validation study. | Jonathan Y Lam, Chisato Shimizu, Adriana H Tremoulet, Emelia Bainto, Samantha C Roberts, Nipha Sivilay, Michael A Gardiner, John T Kanegaye, Alexander H Hogan, Juan C Salazar, Sindhu Mohandas, Jacqueline R Szmuszkovicz, Simran Mahanta, Audrey Dionne, Jane W Newburger, Emily Ansusinha, Roberta L DeBiasi, Shiying Hao, Xuefeng B Ling, Harvey J Cohen, Shamim Nemati, Jane C Burns, , | The Lancet. Digital Health | 2022-01-06 |
| Disparities in telemedicine during COVID-19. | Alexander S Qian, Melody K Schiaffino, Vinit Nalawade, Lara Aziz, Fernanda V Pacheco, Bao Nguyen, Peter Vu, Sandip P Patel, Maria Elena Martinez, James D Murphy | Cancer Medicine | 2022-01-05 |
| Human Milk Oligosaccharides Reduce Murine Group B Vaginal Colonization with Minimal Impact on the Vaginal Microbiota. | Marlyd E Mejia, Samantha Ottinger, Alison Vrbanac, Priyanka Babu, Jacob J Zulk, David Moorshead, Lars Bode, Victor Nizet, Kathryn A Patras | MSphere | 2022-01-05 |
| Machine Learning Applied to Omics Datasets Predicts Mortality in Patients with Alcoholic Hepatitis. | Bei Gao, Tsung-Chin Wu, Sonja Lang, Lu Jiang, Yi Duan, Derrick E Fouts, Xinlian Zhang, Xin-Ming Tu, Bernd Schnabl | Metabolites | 2022-01-05 |
| Gut Microbiome and Alcohol-associated Liver Disease. | Cyriac A Philips, Bernd Schnabl, Jasmohan S Bajaj | Journal Of Clinical And Experimental Hepatology | 2022-01-04 |
| Pediatric Osteoarticular Infections Caused by Mycobacteria Tuberculosis Complex: A 26-Year Review of Cases in San Diego, CA. | Ian Drobish, Nanda Ramchandar, Vanessa Raabe, Alice Pong, John Bradley, Christopher Cannavino | The Pediatric Infectious Disease Journal | 2022-01-03 |
| Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities. | Derek M Bickhart, Mikhail Kolmogorov, Elizabeth Tseng, Daniel M Portik, Anton Korobeynikov, Ivan Tolstoganov, Gherman Uritskiy, Ivan Liachko, Shawn T Sullivan, Sung Bong Shin, Alvah Zorea, Victòria Pascal Andreu, Kevin Panke-Buisse, Marnix H Medema, Itzhak Mizrahi, Pavel A Pevzner, Timothy P L Smith | Nature Biotechnology | 2022-01-03 |
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| Contribution of Concurrent Comorbidities to Sepsis-Related Mortality in Preterm Infants ≤32 Weeks of Gestation at an Academic Neonatal Intensive Care Network. | Brian W Barnette, Benjamin T Schumacher, Richard F Armenta, James L Wynn, Andrew Richardson, John S Bradley, Sarah Lazar, Shelley M Lawrence | American Journal Of Perinatology | 2021-12-31 |
| Chlororesistoflavins A and B, Chlorinated Benzopyrene Antibiotics Produced by the Marine-Derived Actinomycete sp. Strain EG32. | Min Cheol Kim, Zhifei Li, Reiko Cullum, Tadeusz F Molinski, Mennat Allah G Eid, Ali M S Hebishy, Ahmed H I Faraag, Ahmed E Abdel Moneim, Mohamed S Abdelfattah, William Fenical | Journal Of Natural Products | 2021-12-30 |
| Possibilities and limits for using the gut microbiome to improve captive animal health. | Jessica Diaz, Aspen T Reese | Animal Microbiome | 2021-12-29 |
| Saccharobisindole, Neoasterric Methyl Ester, and 7-Chloro-4(1H)-quinolone: Three New Compounds Isolated from the Marine Bacterium sp. | Sohee Kim, Tu Cam Le, Sang-Ah Han, Prima F Hillman, Ahreum Hong, Sunghoon Hwang, Young Eun Du, Hiyoung Kim, Dong-Chan Oh, Sun-Shin Cha, Jihye Lee, Sang-Jip Nam, William Fenical | Marine Drugs | 2021-12-29 |
| Genome-Scale Metabolic Modeling Enables In-Depth Understanding of Big Data. | Anurag Passi, Juan D Tibocha-Bonilla, Manish Kumar, Diego Tec-Campos, Karsten Zengler, Cristal Zuniga | Metabolites | 2021-12-24 |
| Extremophile enzyme optimization for low temperature and high salinity are fundamentally incompatible. | Luke Piszkin, Jeff Bowman | Extremophiles : Life Under Extreme Conditions | 2021-12-23 |
| Linking anaerobic gut bacteria and cardiovascular disease. | Joanna Coker, Livia S Zaramela, Karsten Zengler | Nature Microbiology | 2021-12-23 |
| Class Ib MHC-Mediated Immune Interactions Play a Critical Role in Maintaining Mucosal Homeostasis in the Mammalian Large Intestine. | Suryasarathi Dasgupta, Igor Maricic, Jay Tang, Stephen Wandro, Kelly Weldon, Carolina S Carpenter, Lars Eckmann, Jesus Rivera-Nieves, William Sandborn, Rob Knight, Peter Dorrestein, Austin D Swafford, Vipin Kumar | ImmunoHorizons | 2021-12-15 |
| Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions. | Lian Narunsky-Haziza, Gregory D Sepich-Poore, Ilana Livyatan, Omer Asraf, Cameron Martino, Deborah Nejman, Nancy Gavert, Jason E Stajich, Guy Amit, Antonio González, Stephen Wandro, Gili Perry, Ruthie Ariel, Arnon Meltser, Justin P Shaffer, Qiyun Zhu, Nora Balint-Lahat, Iris Barshack, Maya Dadiani, Einav N Gal-Yam, Sandip Pravin Patel, Amir Bashan, Austin D Swafford, Yitzhak Pilpel, Rob Knight, Ravid Straussman | Cell | 2021-12-13 |
| Mammalian gut metabolomes mirror microbiome composition and host phylogeny. | Rachel Gregor, Maraike Probst, Stav Eyal, Alexander Aksenov, Goor Sasson, Igal Horovitz, Pieter C Dorrestein, Michael M Meijler, Itzhak Mizrahi | The ISME Journal | 2021-12-13 |
| Brilliantia kiribatiensis, a new genus and species of Cladophorales (Chlorophyta) from the remote coral reefs of the Southern Line Islands, Pacific Ocean. | Frederik Leliaert, Emily L A Kelly, Jan Janouškovec, Michael D Fox, Maggie D Johnson, Farran M Redfern, Taati Eria, Andreas F Haas, Enric Sala, Stuart A Sandin, Jennifer E Smith | Journal Of Phycology | 2021-12-12 |
| From microbial community structure to metabolic inference using paprica. | Natalia G Erazo, Avishek Dutta, Jeff S Bowman | STAR Protocols | 2021-12-11 |
| Microbial co-occurrence complicates associations of gut microbiome with US immigration, dietary intake and obesity. | Zheng Wang, Mykhaylo Usyk, Yoshiki Vázquez-Baeza, Guo-Chong Chen, Carmen R Isasi, Jessica S Williams-Nguyen, Simin Hua, Daniel McDonald, Bharat Thyagarajan, Martha L Daviglus, Jianwen Cai, Kari E North, Tao Wang, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi | Genome Biology | 2021-12-10 |
| Bicarbonate modulates delafloxacin activity against MDR Staphylococcus aureus and Pseudomonas aeruginosa. | Mische Holland, Elisabet Bjanes, Victor Nizet, Nicholas Dillon | The Journal Of Antimicrobial Chemotherapy | 2021-12-10 |
| Prior Methamphetamine Use Disorder History Does Not Impair Interoceptive Processing of Soft Touch in HIV Infection. | Amanda Bischoff-Grethe, Ronald J Ellis, Susan F Tapert, Martin P Paulus, Igor Grant, Translational Methamphetamine Aids Research Center Tmarc | Viruses | 2021-12-10 |
| The population genetics of collateral resistance and sensitivity. | Sarah M Ardell, Sergey Kryazhimskiy | ELife | 2021-12-10 |
| CRIg on liver macrophages clears pathobionts and protects against alcoholic liver disease. | Yi Duan, Huikuan Chu, Katharina Brandl, Lu Jiang, Suling Zeng, Nairika Meshgin, Eleni Papachristoforou, Josepmaria Argemi, Beatriz G Mendes, Yanhan Wang, Hua Su, Weizhong Sun, Cristina Llorente, Tim Hendrikx, Xiao Liu, Mojgan Hosseini, Tatiana Kisseleva, David A Brenner, Ramon Bataller, Prakash Ramachandran, Michael Karin, Wenxian Fu, Bernd Schnabl | Nature Communications | 2021-12-09 |
| The fecal mycobiome in non-alcoholic fatty liver disease. | Münevver Demir, Sonja Lang, Phillipp Hartmann, Yi Duan, Anna Martin, Yukiko Miyamoto, Marina Bondareva, Xinlian Zhang, Yanhan Wang, Philipp Kasper, Corinna Bang, Christoph Roderburg, Frank Tacke, Hans-Michael Steffen, Tobias Goeser, Andrey Kruglov, Lars Eckmann, Peter Stärkel, Derrick E Fouts, Bernd Schnabl | Journal Of Hepatology | 2021-12-09 |
| Defining and quantifying the core microbiome: Challenges and prospects. | Alexander T Neu, Eric E Allen, Kaustuv Roy | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-12-04 |
| Clean room microbiome complexity impacts planetary protection bioburden. | Ryan Hendrickson, Camilla Urbaniak, Jeremiah J Minich, Heidi S Aronson, Cameron Martino, Ramunas Stepanauskas, Rob Knight, Kasthuri Venkateswaran | Microbiome | 2021-12-04 |
| Seriniquinones as Therapeutic Leads for Treatment of BRAF and NRAS Mutant Melanomas. | Amanda S Hirata, Paula Rezende-Teixeira, João Agostinho Machado-Neto, Paula C Jimenez, James J La Clair, William Fenical, Leticia V Costa-Lotufo | Molecules (Basel, Switzerland) | 2021-12-04 |
| GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. | Daniel Petras, Vanessa V Phelan, Deepa Acharya, Andrew E Allen, Allegra T Aron, Nuno Bandeira, Benjamin P Bowen, Deirdre Belle-Oudry, Simon Boecker, Dale A Cummings, Jessica M Deutsch, Eoin Fahy, Neha Garg, Rachel Gregor, Jo Handelsman, Mirtha Navarro-Hoyos, Alan K Jarmusch, Scott A Jarmusch, Katherine Louie, Katherine N Maloney, Michael T Marty, Michael M Meijler, Itzhak Mizrahi, Rachel L Neve, Trent R Northen, Carlos Molina-Santiago, Morgan Panitchpakdi, Benjamin Pullman, Aaron W Puri, Robin Schmid, Shankar Subramaniam, Monica Thukral, Felipe Vasquez-Castro, Pieter C Dorrestein, Mingxun Wang | Nature Methods | 2021-12-03 |
| A particulate saponin/TLR agonist vaccine adjuvant alters lymph flow and modulates adaptive immunity. | Murillo Silva, Yu Kato, Mariane B Melo, Ivy Phung, Brian L Freeman, Zhongming Li, Kangsan Roh, Jan W Van Wijnbergen, Hannah Watkins, Chiamaka A Enemuo, Brittany L Hartwell, Jason Y H Chang, Shuhao Xiao, Kristen A Rodrigues, Kimberly M Cirelli, Na Li, Sonya Haupt, Aereas Aung, Benjamin Cossette, Wuhbet Abraham, Swati Kataria, Raiza Bastidas, Jinal Bhiman, Caitlyn Linde, Nathaniel I Bloom, Bettina Groschel, Erik Georgeson, Nicole Phelps, Ayush Thomas, Julia Bals, Diane G Carnathan, Daniel Lingwood, Dennis R Burton, Galit Alter, Timothy P Padera, Angela M Belcher, William R Schief, Guido Silvestri, Ruth M Ruprecht, Shane Crotty, Darrell J Irvine | Science Immunology | 2021-12-03 |
| Gut microbiota-driven brain Aβ amyloidosis in mice requires microglia. | Hemraj B Dodiya, Holly L Lutz, Ian Q Weigle, Priyam Patel, Julia Michalkiewicz, Carlos J Roman-Santiago, Can Martin Zhang, Yingxia Liang, Abhinav Srinath, Xulun Zhang, Jessica Xia, Monica Olszewski, Xiaoqiong Zhang, Matthew John Schipma, Eugene B Chang, Rudolph E Tanzi, Jack A Gilbert, Sangram S Sisodia | The Journal Of Experimental Medicine | 2021-12-02 |
| Intestinal commensal microbiota and cytokines regulate Fut2 Paneth cells for gut defense. | Mariko Kamioka, Yoshiyuki Goto, Kiminori Nakamura, Yuki Yokoi, Rina Sugimoto, Shuya Ohira, Yosuke Kurashima, Shingo Umemoto, Shintaro Sato, Jun Kunisawa, Yu Takahashi, Steven E Domino, Jean-Christophe Renauld, Susumu Nakae, Yoichiro Iwakura, Peter B Ernst, Tokiyoshi Ayabe, Hiroshi Kiyono | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-12-02 |
| Siderophore-mediated zinc acquisition enhances enterobacterial colonization of the inflamed gut. | Judith Behnsen, Hui Zhi, Allegra T Aron, Vivekanandan Subramanian, William Santus, Michael H Lee, Romana R Gerner, Daniel Petras, Janet Z Liu, Keith D Green, Sarah L Price, Jose Camacho, Hannah Hillman, Joshua Tjokrosurjo, Nicola P Montaldo, Evelyn M Hoover, Sean Treacy-Abarca, Benjamin A Gilston, Eric P Skaar, Walter J Chazin, Sylvie Garneau-Tsodikova, Matthew B Lawrenz, Robert D Perry, Sean-Paul Nuccio, Pieter C Dorrestein, Manuela Raffatellu | Nature Communications | 2021-12-01 |
| The Fecal Microbiome and Metabolome of Pitt Hopkins Syndrome, a Severe Autism Spectrum Disorder. | Amanda H Dilmore, Daniel McDonald, Tanya T Nguyen, James B Adams, Rosa Krajmalnik-Brown, Emmanuel Elijah, Pieter C Dorrestein, Rob Knight | MSystems | 2021-11-30 |
| A combined EM and proteomic analysis places HIV-1 Vpu at the crossroads of retromer and ESCRT complexes: PTPN23 is a Vpu-cofactor. | Charlotte A Stoneham, Simon Langer, Paul D De Jesus, Jacob M Wozniak, John Lapek, Thomas Deerinck, Andrea Thor, Lars Pache, Sumit K Chanda, David J Gonzalez, Mark Ellisman, John Guatelli | PLoS Pathogens | 2021-11-29 |
| Physicochemical properties determining drug detection in skin. | Wout Bittremieux, Rohit S Advani, Alan K Jarmusch, Shaden Aguirre, Aileen Lu, Pieter C Dorrestein, Shirley M Tsunoda | Clinical And Translational Science | 2021-11-28 |
| Differential Fecal Microbiome Dysbiosis after Equivalent Traumatic Brain Injury in Aged Versus Young Adult Mice. | Booker T Davis, Mecca B A R Islam, Promi Das, Jack A Gilbert, Karen J Ho, Steven J Schwulst | Journal Of Experimental Neurology | 2021-11-26 |
| Redrawing therapeutic boundaries: microbiota and cancer. | Jonathan Sholl, Gregory D Sepich-Poore, Rob Knight, Thomas Pradeu | Trends In Cancer | 2021-11-26 |
| Host Factors in Dysregulation of the Gut Barrier Function during Alcohol-Associated Liver Disease. | Luca Maccioni, Isabelle A Leclercq, Bernd Schnabl, Peter Stärkel | International Journal Of Molecular Sciences | 2021-11-24 |
| Vertical Inheritance Facilitates Interspecies Diversification in Biosynthetic Gene Clusters and Specialized Metabolites. | Alexander B Chase, Douglas Sweeney, Mitchell N Muskat, Dulce G Guillén-Matus, Paul R Jensen | MBio | 2021-11-23 |
| Comparison of fecal and oral collection methods for studies of the human microbiota in two Iranian cohorts. | Zeni Wu, Autumn G Hullings, Reza Ghanbari, Arash Etemadi, Yunhu Wan, Bin Zhu, Hossein Poustchi, Behnam Bagheri Fahraji, Mohammad Javad Zare Sakhvidi, Jianxin Shi, Rob Knight, Reza Malekzadeh, Rashmi Sinha, Emily Vogtmann | BMC Microbiology | 2021-11-22 |
| Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals. | Linda Wegley Kelly, Craig E Nelson, Daniel Petras, Irina Koester, Zachary A Quinlan, Milou G I Arts, Louis-Felix Nothias, Jacqueline Comstock, Brandie M White, Ellen C Hopmans, Fleur C van Duyl, Craig A Carlson, Lihini I Aluwihare, Pieter C Dorrestein, Andreas F Haas | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-11-22 |
| Native mass spectrometry-based metabolomics identifies metal-binding compounds. | Allegra T Aron, Daniel Petras, Robin Schmid, Julia M Gauglitz, Isabell Büttel, Luis Antelo, Hui Zhi, Sean-Paul Nuccio, Christina C Saak, Kien P Malarney, Eckhard Thines, Rachel J Dutton, Lihini I Aluwihare, Manuela Raffatellu, Pieter C Dorrestein | Nature Chemistry | 2021-11-18 |
| Severe delayed hypersensitivity reactions to IL-1 and IL-6 inhibitors link to common HLA-DRB1*15 alleles. | Vivian E Saper, Michael J Ombrello, Adriana H Tremoulet, Gonzalo Montero-Martin, Sampath Prahalad, Scott Canna, Chisato Shimizu, Gail Deutsch, Serena Y Tan, Elaine F Remmers, Dimitri Monos, Timothy Hahn, Omkar K Phadke, Elaine Cassidy, Ian Ferguson, Vamsee Mallajosyula, Jianpeng Xu, Jaime S Rosa Duque, Gilbert T Chua, Debopam Ghosh, Ann Marie Szymanski, Danielle Rubin, Jane C Burns, Lu Tian, Marcelo A Fernandez-Vina, Elizabeth D Mellins, Jill A Hollenbach, , | Annals Of The Rheumatic Diseases | 2021-11-17 |
| Reporting guidelines for human microbiome research: the STORMS checklist. | Chloe Mirzayi, Audrey Renson, , , Fatima Zohra, Shaimaa Elsafoury, Ludwig Geistlinger, Lora J Kasselman, Kelly Eckenrode, Janneke van de Wijgert, Amy Loughman, Francine Z Marques, David A MacIntyre, Manimozhiyan Arumugam, Rimsha Azhar, Francesco Beghini, Kirk Bergstrom, Ami Bhatt, Jordan E Bisanz, Jonathan Braun, Hector Corrada Bravo, Gregory A Buck, Frederic Bushman, David Casero, Gerard Clarke, Maria Carmen Collado, Paul D Cotter, John F Cryan, Ryan T Demmer, Suzanne Devkota, Eran Elinav, Juan S Escobar, Jennifer Fettweis, Robert D Finn, Anthony A Fodor, Sofia Forslund, Andre Franke, Cesare Furlanello, Jack Gilbert, Elizabeth Grice, Benjamin Haibe-Kains, Scott Handley, Pamela Herd, Susan Holmes, Jonathan P Jacobs, Lisa Karstens, Rob Knight, Dan Knights, Omry Koren, Douglas S Kwon, Morgan Langille, Brianna Lindsay, Dermot McGovern, Alice C McHardy, Shannon McWeeney, Noel T Mueller, Luigi Nezi, Matthew Olm, Noah Palm, Edoardo Pasolli, Jeroen Raes, Matthew R Redinbo, Malte Rühlemann, R Balfour Sartor, Patrick D Schloss, Lynn Schriml, Eran Segal, Michelle Shardell, Thomas Sharpton, Ekaterina Smirnova, Harry Sokol, Justin L Sonnenburg, Sujatha Srinivasan, Louise B Thingholm, Peter J Turnbaugh, Vaibhav Upadhyay, Ramona L Walls, Paul Wilmes, Takuji Yamada, Georg Zeller, Mingyu Zhang, Ni Zhao, Liping Zhao, Wenjun Bao, Aedin Culhane, Viswanath Devanarayan, Joaquin Dopazo, Xiaohui Fan, Matthias Fischer, Wendell Jones, Rebecca Kusko, Christopher E Mason, Tim R Mercer, Susanna-Assunta Sansone, Andreas Scherer, Leming Shi, Shraddha Thakkar, Weida Tong, Russ Wolfinger, Christopher Hunter, Nicola Segata, Curtis Huttenhower, Jennifer B Dowd, Heidi E Jones, Levi Waldron | Nature Medicine | 2021-11-17 |
| Gut microbiome in Parkinson's disease: New insights from meta-analysis. | Tzi Shin Toh, Chun Wie Chong, Shen-Yang Lim, Jeff Bowman, Mihai Cirstea, Chin-Hsien Lin, Chieh-Chang Chen, Silke Appel-Cresswell, B Brett Finlay, Ai Huey Tan | Parkinsonism & Related Disorders | 2021-11-17 |
| Bacteriophages and their potential for treatment of gastrointestinal diseases. | Yi Duan, Ry Young, Bernd Schnabl | Nature Reviews. Gastroenterology & Hepatology | 2021-11-15 |
| High-resolution in situ analysis of Cas9 germline transcript distributions in gene-drive Anopheles mosquitoes. | Gerard Terradas, Anita Hermann, Anthony A James, William McGinnis, Ethan Bier | G3 (Bethesda, Md.) | 2021-11-15 |
| The Human-Milk Oligosaccharide Profile of Lactating Women in Dhaka, Bangladesh. | Lisa G Pell, Eric O Ohuma, Chloe Yonemitsu, Miranda G Loutet, Tahmeed Ahmed, Abdullah Al Mahmud, Meghan B Azad, Lars Bode, Daniel E Roth | Current Developments In Nutrition | 2021-11-13 |
| Microbial-Driven Immunological Memory and Its Potential Role in Microbiome Editing for the Prevention of Colorectal Cancer. | Laure Campillo-Gimenez, David Rios-Covian, Jesus Rivera-Nieves, Hiroshi Kiyono, Hiutung Chu, Peter B Ernst | Frontiers In Cellular And Infection Microbiology | 2021-11-12 |
| Escherichia coli Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational Data | Patrick V Phaneuf, Daniel C Zielinski, James T Yurkovich, Josefin Johnsen, Richard Szubin, Lei Yang, Se Hyeuk Kim, Sebastian Schulz, Muyao Wu, Christopher Dalldorf, Emre Ozdemir, Rebecca M Lennen, Bernhard O Palsson, Adam M Feist | ACS Synthetic Biology | 2021-11-11 |
| Spectrum of Viral Pathogens Identified in Children with Clinical Myocarditis (Pre-COVID, 2000-2018): Etiologic Agent vs Innocent Bystander. | Othman A Aljohani, Duncan Mackie, Andras Bratincsak, John Bradley, James C Perry | The Journal Of Pediatrics | 2021-11-10 |
| Integrative Analysis of Metabolome and Microbiome in Patients with Progressive Alcohol-Associated Liver Disease. | Bei Gao, Yixin Zhu, Nan Gao, Weishou Shen, Peter Stärkel, Bernd Schnabl | Metabolites | 2021-11-10 |
| Identification of a therapeutic interfering particle-A single-dose SARS-CoV-2 antiviral intervention with a high barrier to resistance. | Sonali Chaturvedi, Gustavo Vasen, Michael Pablo, Xinyue Chen, Nathan Beutler, Arjun Kumar, Elizabeth Tanner, Sylvia Illouz, Donna Rahgoshay, John Burnett, Leo Holguin, Pei-Yi Chen, Blaise Ndjamen, Melanie Ott, Robert Rodick, Thomas Rogers, Davey M Smith, Leor S Weinberger | Cell | 2021-11-10 |
| Re-classification of strains and mining secondary metabolite biosynthetic gene clusters. | Namil Lee, Mira Choi, Woori Kim, Soonkyu Hwang, Yongjae Lee, Ji Hun Kim, Gahyeon Kim, Hyeseong Kim, Suhyung Cho, Sun Chang Kim, Bernhard Palsson, Kyoung-Soon Jang, Byung-Kwan Cho | IScience | 2021-11-09 |
| The Gut Microbiome Modifies the Association between a Mediterranean Diet and Diabetes in US Hispanic / Latino Population. | Dong D Wang, Qibin Qi, Zheng Wang, Mykhaylo Usyk, Daniela Sotres-Alvarez, Josiemer Mattei, Martha Tamez, Marc D Gellman, Martha Daviglus, Frank B Hu, Meir J Stampfer, Curtis Huttenhower, Rob Knight, Robert D Burk, Robert C Kaplan | The Journal Of Clinical Endocrinology And Metabolism | 2021-11-08 |
| Multi-Omics Study of Keystone Species in a Cystic Fibrosis Microbiome. | Cynthia B Silveira, Ana G Cobián-Güemes, Carla Uranga, Jonathon L Baker, Anna Edlund, Forest Rohwer, Douglas Conrad | International Journal Of Molecular Sciences | 2021-11-07 |
| Genome mining methods to discover bioactive natural products. | Katherine D Bauman, Keelie S Butler, Bradley S Moore, Jonathan R Chekan | Natural Product Reports | 2021-11-04 |
| Potent Anti-SARS-CoV-2 Activity by the Natural Product Gallinamide A and Analogues via Inhibition of Cathepsin L. | Anneliese S Ashhurst, Arthur H Tang, Pavla Fajtová, Michael C Yoon, Anupriya Aggarwal, Max J Bedding, Alexander Stoye, Laura Beretta, Dustin Pwee, Aleksandra Drelich, Danielle Skinner, Linfeng Li, Thomas D Meek, James H McKerrow, Vivian Hook, Chien-Te Tseng, Mark Larance, Stuart Turville, William H Gerwick, Anthony J O'Donoghue, Richard J Payne | Journal Of Medicinal Chemistry | 2021-11-03 |
| Role of the Gut Microbiota in Parenteral Nutrition-associated Liver Disease: From Current Knowledge to Future Opportunities. | Lu Jiang, Ying Wang, Yongtao Xiao, Yong Wang, Junkai Yan, Bernd Schnabl, Wei Cai | The Journal Of Nutrition | 2021-11-03 |
| Analysis of SARS-CoV-2 RNA Persistence across Indoor Surface Materials Reveals Best Practices for Environmental Monitoring Programs. | Rodolfo A Salido, Victor J Cantú, Alex E Clark, Sandra L Leibel, Anahid Foroughishafiei, Anushka Saha, Abbas Hakim, Alhakam Nouri, Alma L Lastrella, Anelizze Castro-Martínez, Ashley Plascencia, Bhavika K Kapadia, Bing Xia, Christopher A Ruiz, Clarisse A Marotz, Daniel Maunder, Elijah S Lawrence, Elizabeth W Smoot, Emily Eisner, Evelyn S Crescini, Laura Kohn, Lizbeth Franco Vargas, Marisol Chacón, Maryann Betty, Michal Machnicki, Min Yi Wu, Nathan A Baer, Pedro Belda-Ferre, Peter De Hoff, Phoebe Seaver, R Tyler Ostrander, Rebecca Tsai, Shashank Sathe, Stefan Aigner, Sydney C Morgan, Toan T Ngo, Tom Barber, Willi Cheung, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Rebecca Fielding-Miller, Rob Knight | MSystems | 2021-11-02 |
| Putting microbial interactions back into community contexts. | Emily C Pierce, Rachel J Dutton | Current Opinion In Microbiology | 2021-11-02 |
| Uremic serum damages endothelium by provoking excessive neutrophil extracellular trap formation. | Hoi Woul Lee, Victor Nizet, Jung Nam An, Hyung Seok Lee, Young Rim Song, Sung Gyun Kim, Jwa-Kyung Kim | Scientific Reports | 2021-11-02 |
| The interaction of enteric bacterial effectors with the host engulfment pathway control innate immune responses. | Ibrahim M Sayed, Stella-Rita Ibeawuchi, Dominique Lie, Mahitha Shree Anandachar, Rama Pranadinata, Manuela Raffatellu, Soumita Das | Gut Microbes | 2021-11-01 |
| Antibacterial Meroterpenoids, Merochlorins G-J from the Marine Bacterium sp. | Min-Ji Ryu, Prima F Hillman, Jihye Lee, Sunghoon Hwang, Eun-Young Lee, Sun-Shin Cha, Inho Yang, Dong-Chan Oh, Sang-Jip Nam, William Fenical | Marine Drugs | 2021-10-30 |
| Development of a Rapid and Sensitive CasRx-Based Diagnostic Assay for SARS-CoV-2. | Daniel J Brogan, Duverney Chaverra-Rodriguez, Calvin P Lin, Andrea L Smidler, Ting Yang, Lenissa M Alcantara, Igor Antoshechkin, Junru Liu, Robyn R Raban, Pedro Belda-Ferre, Rob Knight, Elizabeth A Komives, Omar S Akbari | ACS Sensors | 2021-10-29 |
| Fecal Microbiome Composition Does Not Predict Diet-Induced TMAO Production in Healthy Adults. | Marc Ferrell, Peter Bazeley, Zeneng Wang, Bruce S Levison, Xinmin S Li, Xun Jia, Ronald M Krauss, Rob Knight, Aldons J Lusis, J C Garcia-Garcia, Stanley L Hazen, W H Wilson Tang | Journal Of The American Heart Association | 2021-10-29 |
| Rapid, Affordable, and Uncomplicated Production of Bacterial Cell-free Lysate. | Robert M Cooper, Taishi Tonooka, Andriy Didovyk, Jeff Hasty | Journal Of Visualized Experiments : JoVE | 2021-10-29 |
| Facultative Parthenogenesis in California Condors. | Oliver A Ryder, Steven Thomas, Jessica Martin Judson, Michael N Romanov, Sugandha Dandekar, Jeanette C Papp, Lindsay C Sidak-Loftis, Kelli Walker, Ilse H Stalis, Michael Mace, Cynthia C Steiner, Leona G Chemnick | The Journal Of Heredity | 2021-10-28 |
| Asymptomatic detection of SARS-CoV-2 among cancer patients receiving infusional anti-cancer therapy. | Justin Shaya, Angelo Cabal, Taylor Nonato, Francesca Torriani, Joseph Califano, Scott Lippman, Assuntina Sacco, Rana R McKay | Cancer Medicine | 2021-10-28 |
| Biosynthesis and antifungal activity of fungus-induced O-methylated flavonoids in maize. | Christiane Förster, Vinzenz Handrick, Yezhang Ding, Yoko Nakamura, Christian Paetz, Bernd Schneider, Gabriel Castro-Falcón, Chambers C Hughes, Katrin Luck, Sowmya Poosapati, Grit Kunert, Alisa Huffaker, Jonathan Gershenzon, Eric A Schmelz, Tobias G Köllner | Plant Physiology | 2021-10-27 |
| Characterization of SARS-CoV-2 and common cold coronavirus-specific T-cell responses in MIS-C and Kawasaki disease children. | Li-En Hsieh, Alba Grifoni, John Sidney, Chisato Shimizu, Hiroko Shike, Nanda Ramchandar, Elizabeth Moreno, Adriana H Tremoulet, Jane C Burns, Alessandra Franco | European Journal Of Immunology | 2021-10-27 |
| Drugs and Bugs: The Gut-Brain Axis and Substance Use Disorders. | Sierra Simpson, Rio Mclellan, Emma Wellmeyer, Frederic Matalon, Olivier George | Journal Of Neuroimmune Pharmacology : The Official Journal Of The Society On NeuroImmune Pharmacology | 2021-10-25 |
| Editorial: Host-Pathogen Interactions During Pneumococcal Infection. | Masaya Yamaguchi, Yuki Kinjo, Victor Nizet | Frontiers In Cellular And Infection Microbiology | 2021-10-25 |
| Population Pharmacokinetic Modeling and Probability of Pharmacodynamic Target Attainment for Ceftazidime-Avibactam in Pediatric Patients Aged 3 Months and Older. | Richard C Franzese, Lynn McFadyen, Kenny J Watson, Todd Riccobene, Timothy J Carrothers, Manoli Vourvahis, Phylinda L S Chan, Susan Raber, John S Bradley, Mark Lovern | Clinical Pharmacology And Therapeutics | 2021-10-23 |
| Hepatocellular Carcinoma Risk Assessment for Patients With Advanced Fibrosis After Eradication of Hepatitis C Virus. | Nobuharu Tamaki, Masayuki Kurosaki, Yutaka Yasui, Nami Mori, Keiji Tsuji, Chitomi Hasebe, Kouji Joko, Takehiro Akahane, Koichiro Furuta, Haruhiko Kobashi, Hiroyuki Kimura, Hitoshi Yagisawa, Hiroyuki Marusawa, Masahiko Kondo, Yuji Kojima, Hideo Yoshida, Yasushi Uchida, Toshifumi Tada, Shinichiro Nakamura, Satoshi Yasuda, Hidenori Toyoda, Rohit Loomba, Namiki Izumi | Hepatology Communications | 2021-10-22 |
| Mucin-mimetic glycan arrays integrating machine learning for analyzing receptor pattern recognition by influenza A viruses. | Taryn M Lucas, Chitrak Gupta, Meghan O Altman, Emi Sanchez, Matthew R Naticchia, Pascal Gagneux, Abhishek Singharoy, Kamil Godula | Chem | 2021-10-22 |
| Specialized Metabolite Mediated Predation Defense in the Marine Actinobacterium Salinispora | Robert N Tuttle, Greg W Rouse, Gabriel Castro-Falcón, Chambers C Hughes, Paul R Jensen | Applied And Environmental Microbiology | 2021-10-20 |
| Antimicrobials from a feline commensal bacterium inhibit skin infection by drug-resistant S. pseudintermedius | Alan M O'Neill, Kate A Worthing, Nikhil Kulkarni, Fengwu Li, Teruaki Nakatsuji, Dominic McGrosso, Robert H Mills, Gayathri Kalla, Joyce Y Cheng, Jacqueline M Norris, Kit Pogliano, Joe Pogliano, David J Gonzalez, Richard L Gallo | ELife | 2021-10-19 |
| The S Protein of Group B Is a Critical Virulence Determinant That Impacts the Cell Surface Virulome. | Anaamika Campeau, Satoshi Uchiyama, Concepcion Sanchez, Consuelo Sauceda, Victor Nizet, David J Gonzalez | Frontiers In Microbiology | 2021-10-14 |
| Immune Response in Severe and Non-Severe Coronavirus Disease 2019 (COVID-19) Infection: A Mechanistic Landscape. | Kavitha Mukund, Priya Nayak, Chethan Ashokkumar, Sohail Rao, Jose Almeda, Monica M Betancourt-Garcia, Rakesh Sindhi, Shankar Subramaniam | Frontiers In Immunology | 2021-10-13 |
| Microbial diversity in tropical marine sediments assessed using culture-dependent and culture-independent techniques. | Alyssa M Demko, Nastassia V Patin, Paul R Jensen | Environmental Microbiology | 2021-10-11 |
| Traditional Farming Lifestyle in Old Older Mennonites Modulates Human Milk Composition. | Antti E Seppo, Rakin Choudhury, Catherine Pizzarello, Rohith Palli, Sade Fridy, Puja Sood Rajani, Jessica Stern, Camille Martina, Chloe Yonemitsu, Lars Bode, Kevin Bu, Sabrina Tamburini, Enrica Piras, David S Wallach, Maria Allen, R John Looney, Jose C Clemente, Juilee Thakar, Kirsi M Järvinen | Frontiers In Immunology | 2021-10-11 |
| Reconstitution of an intact clock reveals mechanisms of circadian timekeeping. | Archana G Chavan, Jeffrey A Swan, Joel Heisler, Cigdem Sancar, Dustin C Ernst, Mingxu Fang, Joseph G Palacios, Rebecca K Spangler, Clive R Bagshaw, Sarvind Tripathi, Priya Crosby, Susan S Golden, Carrie L Partch, Andy LiWang | Science (New York, N.Y.) | 2021-10-08 |
| SARS-CoV-2 infection generates tissue-localized immunological memory in humans. | Maya M L Poon, Ksenia Rybkina, Yu Kato, Masaru Kubota, Rei Matsumoto, Nathaniel I Bloom, Zeli Zhang, Kathryn M Hastie, Alba Grifoni, Daniela Weiskopf, Steven B Wells, Basak B Ural, Nora Lam, Peter A Szabo, Pranay Dogra, Yoon S Lee, Joshua I Gray, Marissa C Bradley, Maigan A Brusko, Todd M Brusko, Erica O Saphire, Thomas J Connors, Alessandro Sette, Shane Crotty, Donna L Farber | Science Immunology | 2021-10-07 |
| A posteriori dietary patterns better explain variations of the gut microbiome than individual markers in the American Gut Project. | Aurélie Cotillard, Agnès Cartier-Meheust, Nicole S Litwin, Soline Chaumont, Mathilde Saccareau, Franck Lejzerowicz, Julien Tap, Hana Koutnikova, Diana Gutierrez Lopez, Daniel McDonald, Se Jin Song, Rob Knight, Muriel Derrien, Patrick Veiga | The American Journal Of Clinical Nutrition | 2021-10-07 |
| Vitamin B-12 and the Gastrointestinal Microbiome: A Systematic Review. | Heather M Guetterman, Samantha L Huey, Rob Knight, Allison M Fox, Saurabh Mehta, Julia L Finkelstein | Advances In Nutrition (Bethesda, Md.) | 2021-10-06 |
| Uniform Manifold Approximation and Projection (UMAP) Reveals Composite Patterns and Resolves Visualization Artifacts in Microbiome Data. | George Armstrong, Cameron Martino, Gibraan Rahman, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Gal Mishne, Rob Knight | MSystems | 2021-10-05 |
| Spatial metabolomics identifies localized chemical changes in heart tissue during chronic cardiac Chagas Disease. | Danya A Dean, Gautham Gautham, Jair L Siqueira-Neto, James H McKerrow, Pieter C Dorrestein, Laura-Isobel McCall | PLoS Neglected Tropical Diseases | 2021-10-04 |
| Update on the Role of the Gut Microbiota on Alcohol-Associated Liver Disease. | Bernd Schnabl | Gastroenterology & Hepatology | 2021-10-04 |
| Unique virulence role of post-translocational chaperone PrsA in shaping secretome. | Zhao-Yi Wu, Anaamika Campeau, Chao-Hsien Liu, David J Gonzalez, Masaya Yamaguchi, Shigetada Kawabata, Chieh-Hsien Lu, Chian-Yu Lai, Hao-Chieh Chiu, Yung-Chi Chang | Virulence | 2021-10-01 |
| Iron-regulatory genes are associated with Neuroimaging measures in HIV infection. | Christine Fennema-Notestine, Tricia A Thornton-Wells, Todd Hulgan, Scott Letendre, Ronald J Ellis, Donald R Franklin, Albert M Anderson, Robert K Heaton, Cinnamon S Bloss, Igor Grant, Asha R Kallianpur, | Brain Imaging And Behavior | 2021-10-01 |
| Dietary Neu5Ac Intervention Protects Against Atherosclerosis Associated With Human-Like Neu5Gc Loss. | Kunio Kawanishi, Joanna K Coker, Kaare V Grunddal, Chirag Dhar, Jason Hsiao, Karsten Zengler, Nissi Varki, Ajit Varki, Philip L S M Gordts | Arteriosclerosis, Thrombosis, And Vascular Biology | 2021-09-30 |
| Bacterial Membrane-Derived Vesicles Attenuate Vancomycin Activity against Methicillin-Resistant . | Monika Kumaraswamy, Kamilla Wiull, Bishnu Joshi, George Sakoulas, Armin Kousha, Gustav Vaaje-Kolstad, Mona Johannessen, Kristin Hegstad, Victor Nizet, Fatemeh Askarian | Microorganisms | 2021-09-29 |
| Microbial Ecology and Evolution Are Essential for Understanding Pandemics. | Megan E Frederickson, Aspen T Reese | MBio | 2021-09-28 |
| Determinants of SARS-CoV-2 entry and replication in airway mucosal tissue and susceptibility in smokers. | Tsuguhisa Nakayama, Ivan T Lee, Sizun Jiang, Matthias S Matter, Carol H Yan, Jonathan B Overdevest, Chien-Ting Wu, Yury Goltsev, Liang-Chun Shih, Chun-Kang Liao, Bokai Zhu, Yunhao Bai, Peter Lidsky, Yinghong Xiao, David Zarabanda, Angela Yang, Meena Easwaran, Christian M Schürch, Pauline Chu, Han Chen, Anna K Stalder, David R McIlwain, Nicole A Borchard, Phil A Gall, Sachi S Dholakia, Wei Le, Le Xu, Chih-Jaan Tai, Te-Huei Yeh, Elizabeth Erickson-Direnzo, Jason M Duran, Kirsten D Mertz, Peter H Hwang, Jasmin D Haslbauer, Peter K Jackson, Thomas Menter, Raul Andino, Peter D Canoll, Adam S DeConde, Zara M Patel, Alexandar Tzankov, Garry P Nolan, Jayakar V Nayak | Cell Reports. Medicine | 2021-09-28 |
| Detection and quantification of Mycobacterium tuberculosis antigen CFP10 in serum and urine for the rapid diagnosis of active tuberculosis disease. | Marva Seifert, Eva Vargas, Victor Ruiz-Valdepeñas Montiel, Joseph Wang, Timothy C Rodwell, Antonino Catanzaro | Scientific Reports | 2021-09-28 |
| Discovery and Mechanism of SARS-CoV-2 Main Protease Inhibitors. | Sarah Huff, Indrasena Reddy Kummetha, Shashi Kant Tiwari, Matthew B Huante, Alex E Clark, Shaobo Wang, William Bray, Davey Smith, Aaron F Carlin, Mark Endsley, Tariq M Rana | Journal Of Medicinal Chemistry | 2021-09-27 |
| SARS-CoV-2 Variants of Concern. | Jun Yong Choi, Davey M Smith | Yonsei Medical Journal | 2021-09-27 |
| RiboRid: A low cost, advanced, and ultra-efficient method to remove ribosomal RNA for bacterial transcriptomics. | Donghui Choe, Richard Szubin, Saugat Poudel, Anand Sastry, Yoseb Song, Yongjae Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | PLoS Genetics | 2021-09-27 |
| Gut epithelial IL-27 confers intestinal immunity through the induction of intraepithelial lymphocytes. | Chia-Hao Lin, Mei-Chi Chen, Ling-Li Lin, David A Christian, Booki Min, Christopher A Hunter, Li-Fan Lu | The Journal Of Experimental Medicine | 2021-09-23 |
| Restriction factor compendium for influenza A virus reveals a mechanism for evasion of autophagy. | Laura Martin-Sancho, Shashank Tripathi, Ariel Rodriguez-Frandsen, Lars Pache, Maite Sanchez-Aparicio, Michael J McGregor, Kelsey M Haas, Danielle L Swaney, Thong T Nguyen, João I Mamede, Christopher Churas, Dexter Pratt, Sara B Rosenthal, Laura Riva, Courtney Nguyen, Nish Beltran-Raygoza, Stephen Soonthornvacharin, Guojun Wang, David Jimenez-Morales, Paul D De Jesus, Hong M Moulton, David A Stein, Max W Chang, Chris Benner, Trey Ideker, Randy A Albrecht, Judd F Hultquist, Nevan J Krogan, Adolfo García-Sastre, Sumit K Chanda | Nature Microbiology | 2021-09-23 |
| Mass spectrometry-based metabolomics in microbiome investigations. | Anelize Bauermeister, Helena Mannochio-Russo, Letícia V Costa-Lotufo, Alan K Jarmusch, Pieter C Dorrestein | Nature Reviews. Microbiology | 2021-09-22 |
| Challenges in Determining the Role of Microbiome Evolution in Barrett's Esophagus and Progression to Esophageal Adenocarcinoma. | Caitlin Guccione, Rena Yadlapati, Shailja Shah, Rob Knight, Kit Curtius | Microorganisms | 2021-09-22 |
| Markers of Gut Barrier Function and Microbial Translocation Associate with Lower Gut Microbial Diversity in People with HIV. | Ronald J Ellis, Jennifer E Iudicello, Robert K Heaton, Stéphane Isnard, John Lin, Jean-Pierre Routy, Sara Gianella, Martin Hoenigl, Rob Knight | Viruses | 2021-09-22 |
| Detection of sulfate-reducing bacteria as an indicator for successful mitigation of sulfide production. | Avishek Dutta, Fernando Valle, Thomas Goldman, Jeff Keating, Ellen Burke, Nicole Williamson, Reinhard Dirmeier, Jeff S Bowman | Applied And Environmental Microbiology | 2021-09-22 |
| Extrachromosomal DNA in HPV-Mediated Oropharyngeal Cancer Drives Diverse Oncogene Transcription. | John Pang, Nam Nguyen, Jens Luebeck, Laurel Ball, Andrey Finegersh, Shuling Ren, Takuya Nakagawa, Mitchell Flagg, Sayed Sadat, Paul S Mischel, Guorong Xu, Kathleen Fisch, Theresa Guo, Gabrielle Cahill, Bharat Panuganti, Vineet Bafna, Joseph Califano | Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research | 2021-09-21 |
| Endothelial Heparan Sulfate Mediates Hepatic Neutrophil Trafficking and Injury during Staphylococcus aureus Sepsis. | Gregory J Golden, Alejandro Gómez Toledo, Alex Marki, James T Sorrentino, Claire Morris, Raquel J Riley, Charlotte Spliid, Qiongyu Chen, Ingrid Cornax, Nathan E Lewis, Nissi Varki, Dzung Le, Johan Malmström, Christofer Karlsson, Klaus Ley, Victor Nizet, Jeffrey D Esko | MBio | 2021-09-21 |
| Continental-Scale Paddy Soil Bacterial Community Structure, Function, and Biotic Interaction. | Hong-Yi Li, Hang Wang, Xin-Hua Tao, Xian-Zhe Wang, Wei-Zheng Jin, Jack A Gilbert, Yong-Guan Zhu, Zhi-Jian Zhang | MSystems | 2021-09-21 |
| Cell-intrinsic and -extrinsic roles of miRNAs in regulating T cell immunity. | Sunglim Cho, Jiayi Dong, Li-Fan Lu | Immunological Reviews | 2021-09-21 |
| Immunobiology of the Classical Lancefield Group A Streptococcal Carbohydrate Antigen. | Nina J Gao, Ervin Rodas Lima, Victor Nizet | Infection And Immunity | 2021-09-20 |
| Streptolysins are the primary inflammasome activators in macrophages during Streptococcus pyogenes infection. | Johanna Richter, Mercedes M Monteleone, Amanda J Cork, Timothy C Barnett, Victor Nizet, Stephan Brouwer, Kate Schroder, Mark J Walker | Immunology And Cell Biology | 2021-09-18 |
| Genetic dissection of complex traits using hierarchical biological knowledge. | Hidenori Tanaka, Jason F Kreisberg, Trey Ideker | PLoS Computational Biology | 2021-09-17 |
| Chemical Proportionality within Molecular Networks. | Daniel Petras, Andrés Mauricio Caraballo-Rodríguez, Alan K Jarmusch, Carlos Molina-Santiago, Julia M Gauglitz, Emily C Gentry, Pedro Belda-Ferre, Diego Romero, Shirley M Tsunoda, Pieter C Dorrestein, Mingxun Wang | Analytical Chemistry | 2021-09-17 |
| Tender and swollen joint counts are poorly associated with disability in chikungunya arthritis compared to rheumatoid arthritis. | Hugh Watson, Ramão Luciano Nogueira-Hayd, Maony Rodrigues-Moreno, Felipe Naveca, Giulia Calusi, Karol Suchowiecki, Gary S Firestein, Gary Simon, Aileen Y Chang | Scientific Reports | 2021-09-17 |
| Mechanisms for control of skin immune function by the microbiome. | Teruaki Nakatsuji, Joyce Y Cheng, Richard L Gallo | Current Opinion In Immunology | 2021-09-16 |
| Gut Metabolites Are More Predictive of Disease and Cohoused States than Gut Bacterial Features in a Polycystic Ovary Syndrome-Like Mouse Model. | Bryan Ho, Daniel Ryback, Basilin Benson, Cayla N Mason, Pedro J Torres, Robert A Quinn, Varykina G Thackray, Scott T Kelley | MSystems | 2021-09-14 |
| Promises of microbiome-based therapies. | Jasmohan S Bajaj, Siew C Ng, Bernd Schnabl | Journal Of Hepatology | 2021-09-13 |
| Reduced gut microbiome diversity in people with HIV who have distal neuropathic pain. | Ronald J Ellis, Robert K Heaton, Sara Gianella, Gibraan Rahman, Rob Knight | The Journal Of Pain | 2021-09-13 |
| Oligosaccharides and Microbiota in Human Milk Are Interrelated at 3 Months Postpartum in a Cohort of Women with a High Prevalence of Gestational Impaired Glucose Tolerance. | Lauren LeMay-Nedjelski, Chloe Yonemitsu, Michelle R Asbury, James Butcher, Sylvia H Ley, Anthony J Hanley, Alex Kiss, Sharon Unger, Julia K Copeland, Pauline W Wang, Alain Stintzi, Lars Bode, Deborah L O'Connor | The Journal Of Nutrition | 2021-09-11 |
| SARS-CoV-2 indoor air transmission is a threat that can be addressed with science. | Jonathan M Samet, Thomas A Burke, Seema S Lakdawala, John J Lowe, Linsey C Marr, Kimberly A Prather, Marilee Shelton-Davenport, John Volckens | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-09-09 |
| Dissecting the Shared Genetic Architecture of Suicide Attempt, Psychiatric Disorders, and Known Risk Factors. | Niamh Mullins, JooEun Kang, Adrian I Campos, Jonathan R I Coleman, Alexis C Edwards, Hanga Galfalvy, Daniel F Levey, Adriana Lori, Andrey Shabalin, Anna Starnawska, Mei-Hsin Su, Hunna J Watson, Mark Adams, Swapnil Awasthi, Michael Gandal, Jonathan D Hafferty, Akitoyo Hishimoto, Minsoo Kim, Satoshi Okazaki, Ikuo Otsuka, Stephan Ripke, Erin B Ware, Andrew W Bergen, Wade H Berrettini, Martin Bohus, Harry Brandt, Xiao Chang, Wei J Chen, Hsi-Chung Chen, Steven Crawford, Scott Crow, Emily DiBlasi, Philibert Duriez, Fernando Fernández-Aranda, Manfred M Fichter, Steven Gallinger, Stephen J Glatt, Philip Gorwood, Yiran Guo, Hakon Hakonarson, Katherine A Halmi, Hai-Gwo Hwu, Sonia Jain, Stéphane Jamain, Susana Jiménez-Murcia, Craig Johnson, Allan S Kaplan, Walter H Kaye, Pamela K Keel, James L Kennedy, Kelly L Klump, Dong Li, Shih-Cheng Liao, Klaus Lieb, Lisa Lilenfeld, Chih-Min Liu, Pierre J Magistretti, Christian R Marshall, James E Mitchell, Eric T Monson, Richard M Myers, Dalila Pinto, Abigail Powers, Nicolas Ramoz, Stefan Roepke, Vsevolod Rozanov, Stephen W Scherer, Christian Schmahl, Marcus Sokolowski, Michael Strober, Laura M Thornton, Janet Treasure, Ming T Tsuang, Stephanie H Witt, D Blake Woodside, Zeynep Yilmaz, Lea Zillich, Rolf Adolfsson, Ingrid Agartz, Tracy M Air, Martin Alda, Lars Alfredsson, Ole A Andreassen, Adebayo Anjorin, Vivek Appadurai, María Soler Artigas, Sandra Van der Auwera, M Helena Azevedo, Nicholas Bass, Claiton H D Bau, Bernhard T Baune, Frank Bellivier, Klaus Berger, Joanna M Biernacka, Tim B Bigdeli, Elisabeth B Binder, Michael Boehnke, Marco P Boks, Rosa Bosch, David L Braff, Richard Bryant, Monika Budde, Enda M Byrne, Wiepke Cahn, Miguel Casas, Enrique Castelao, Jorge A Cervilla, Boris Chaumette, Sven Cichon, Aiden Corvin, Nicholas Craddock, David Craig, Franziska Degenhardt, Srdjan Djurovic, Howard J Edenberg, Ayman H Fanous, Jerome C Foo, Andreas J Forstner, Mark Frye, Janice M Fullerton, Justine M Gatt, Pablo V Gejman, Ina Giegling, Hans J Grabe, Melissa J Green, Eugenio H Grevet, Maria Grigoroiu-Serbanescu, Blanca Gutierrez, Jose Guzman-Parra, Steven P Hamilton, Marian L Hamshere, Annette Hartmann, Joanna Hauser, Stefanie Heilmann-Heimbach, Per Hoffmann, Marcus Ising, Ian Jones, Lisa A Jones, Lina Jonsson, René S Kahn, John R Kelsoe, Kenneth S Kendler, Stefan Kloiber, Karestan C Koenen, Manolis Kogevinas, Bettina Konte, Marie-Odile Krebs, Mikael Landén, Jacob Lawrence, Marion Leboyer, Phil H Lee, Douglas F Levinson, Calwing Liao, Jolanta Lissowska, Susanne Lucae, Fermin Mayoral, Susan L McElroy, Patrick McGrath, Peter McGuffin, Andrew McQuillin, Sarah E Medland, Divya Mehta, Ingrid Melle, Yuri Milaneschi, Philip B Mitchell, Esther Molina, Gunnar Morken, Preben Bo Mortensen, Bertram Müller-Myhsok, Caroline Nievergelt, Vishwajit Nimgaonkar, Markus M Nöthen, Michael C O'Donovan, Roel A Ophoff, Michael J Owen, Carlos Pato, Michele T Pato, Brenda W J H Penninx, Jonathan Pimm, Giorgio Pistis, James B Potash, Robert A Power, Martin Preisig, Digby Quested, Josep Antoni Ramos-Quiroga, Andreas Reif, Marta Ribasés, Vanesa Richarte, Marcella Rietschel, Margarita Rivera, Andrea Roberts, Gloria Roberts, Guy A Rouleau, Diego L Rovaris, Dan Rujescu, Cristina Sánchez-Mora, Alan R Sanders, Peter R Schofield, Thomas G Schulze, Laura J Scott, Alessandro Serretti, Jianxin Shi, Stanley I Shyn, Lea Sirignano, Pamela Sklar, Olav B Smeland, Jordan W Smoller, Edmund J S Sonuga-Barke, Gianfranco Spalletta, John S Strauss, Beata Świątkowska, Maciej Trzaskowski, Gustavo Turecki, Laura Vilar-Ribó, John B Vincent, Henry Völzke, James T R Walters, Cynthia Shannon Weickert, Thomas W Weickert, Myrna M Weissman, Leanne M Williams, Naomi R Wray, Clement C Zai, Allison E Ashley-Koch, Jean C Beckham, Elizabeth R Hauser, Michael A Hauser, Nathan A Kimbrel, Jennifer H Lindquist, Benjamin McMahon, David W Oslin, Xuejun Qin, , , , , , , Esben Agerbo, Anders D Børglum, Gerome Breen, Annette Erlangsen, Tõnu Esko, Joel Gelernter, David M Hougaard, Ronald C Kessler, Henry R Kranzler, Qingqin S Li, Nicholas G Martin, Andrew M McIntosh, Ole Mors, Merete Nordentoft, Catherine M Olsen, David Porteous, Robert J Ursano, Danuta Wasserman, Thomas Werge, David C Whiteman, Cynthia M Bulik, Hilary Coon, Ditte Demontis, Anna R Docherty, Po-Hsiu Kuo, Cathryn M Lewis, J John Mann, Miguel E Rentería, Daniel J Smith, Eli A Stahl, Murray B Stein, Fabian Streit, Virginia Willour, Douglas M Ruderfer | Biological Psychiatry | 2021-09-09 |
| Bacterial Cytological Profiling Identifies Rhodanine-Containing PAINS Analogs as Specific Inhibitors of Thymidylate Kinase . | Elizabeth T Montaño, Jason F Nideffer, Joseph Sugie, Eray Enustun, Adam B Shapiro, Hannah Tsunemoto, Alan I Derman, Kit Pogliano, Joe Pogliano | Journal Of Bacteriology | 2021-09-08 |
| Gut microbiota alterations in response to sleep length among African-origin adults. | Na Fei, Candice Choo-Kang, Sirimon Reutrakul, Stephanie J Crowley, Dale Rae, Kweku Bedu-Addo, Jacob Plange-Rhule, Terrence E Forrester, Estelle V Lambert, Pascal Bovet, Walter Riesen, Wolfgang Korte, Amy Luke, Brian T Layden, Jack A Gilbert, Lara R Dugas | PloS One | 2021-09-08 |
| Trivalent Subunit Vaccine Candidates for COVID-19 and Their Delivery Devices. | Oscar A Ortega-Rivera, Matthew D Shin, Angela Chen, Veronique Beiss, Miguel A Moreno-Gonzalez, Miguel A Lopez-Ramirez, Maria Reynoso, Hong Wang, Brett L Hurst, Joseph Wang, Jonathan K Pokorski, Nicole F Steinmetz | Journal Of The American Chemical Society | 2021-09-07 |
| Vaccine genetics of IGHV1-2 VRC01-class broadly neutralizing antibody precursor naïve human B cells. | Jeong Hyun Lee, Laura Toy, Justin T Kos, Yana Safonova, William R Schief, Colin Havenar-Daughton, Corey T Watson, Shane Crotty | NPJ Vaccines | 2021-09-06 |
| Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes. | George W Armstrong, Kalen Cantrell, Shi Huang, Daniel McDonald, Niina Haiminen, Anna Paola Carrieri, Qiyun Zhu, Antonio Gonzalez, Imran McGrath, Kristen Beck, Daniel Hakim, Aki S Havulinna, Guillaume Méric, Teemu Niiranen, Leo Lahti, Veikko Salomaa, Mohit Jain, Michael Inouye, Austin D Swafford, Ho-Cheol Kim, Laxmi Parida, Yoshiki Vázquez-Baeza, Rob Knight | Genome Research | 2021-09-03 |
| Resurgence of SARS-CoV-2 Infection in a Highly Vaccinated Health System Workforce. | Jocelyn Keehner, Lucy E Horton, Nancy J Binkin, Louise C Laurent, David Pride, Christopher A Longhurst, Shira R Abeles, Francesca J Torriani | The New England Journal Of Medicine | 2021-09-01 |
| AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics. | Lorenzo Casalino, Abigail C Dommer, Zied Gaieb, Emilia P Barros, Terra Sztain, Surl-Hee Ahn, Anda Trifan, Alexander Brace, Anthony T Bogetti, Austin Clyde, Heng Ma, Hyungro Lee, Matteo Turilli, Syma Khalid, Lillian T Chong, Carlos Simmerling, David J Hardy, Julio Dc Maia, James C Phillips, Thorsten Kurth, Abraham C Stern, Lei Huang, John D McCalpin, Mahidhar Tatineni, Tom Gibbs, John E Stone, Shantenu Jha, Arvind Ramanathan, Rommie E Amaro | The International Journal Of High Performance Computing Applications | 2021-09-01 |
| Making Sense of a Scent-Sensing Metaphor for Microbes and Environmental Predictions. | Jeff S Bowman | MSystems | 2021-08-31 |
| Diet and feeding pattern modulate diurnal dynamics of the ileal microbiome and transcriptome. | Ana Carolina Dantas Machado, Steven D Brown, Amulya Lingaraju, Vignesh Sivaganesh, Cameron Martino, Amandine Chaix, Peng Zhao, Antonio F M Pinto, Max W Chang, R Alexander Richter, Alan Saghatelian, Alan R Saltiel, Rob Knight, Satchidananda Panda, Amir Zarrinpar | Cell Reports | 2021-08-30 |
| Structure-Based Optimization of Quinazolines as Cruzain and CATL Inhibitors. | Elany Barbosa da Silva, Débora A Rocha, Isadora S Fortes, Wenqian Yang, Ludovica Monti, Jair L Siqueira-Neto, Conor R Caffrey, James McKerrow, Saulo F Andrade, Rafaela S Ferreira | Journal Of Medicinal Chemistry | 2021-08-30 |
| Immunohistochemical and qPCR Detection of SARS-CoV-2 in the Human Middle Ear Versus the Nasal Cavity: Case Series. | Arwa Kurabi, Kwang Pak, Adam S DeConde, Allen F Ryan, Carol H Yan | Head And Neck Pathology | 2021-08-28 |
| Airborne transmission of respiratory viruses. | Chia C Wang, Kimberly A Prather, Josué Sznitman, Jose L Jimenez, Seema S Lakdawala, Zeynep Tufekci, Linsey C Marr | Science (New York, N.Y.) | 2021-08-27 |
| Decentralized vitamin C & D dual biosensor chip: Toward personalized immune system support. | Víctor Ruiz-Valdepeñas Montiel, Juliane R Sempionatto, Eva Vargas, Eileen Bailey, Jennifer May, Andrea Bulbarello, André Düsterloh, Nathan Matusheski, Joseph Wang | Biosensors & Bioelectronics | 2021-08-26 |
| Continuous measurements of volatile gases as detection of algae crop health. | Jon S Sauer, Ryan Simkovsky, Alexia N Moore, Luis Camarda, Summer L Sherman, Kimberly A Prather, Robert S Pomeroy | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-08-25 |
| Antibody responses induced by SHIV infection are more focused than those induced by soluble native HIV-1 envelope trimers in non-human primates. | Jelle van Schooten, Marlies M van Haaren, Hui Li, Laura E McCoy, Colin Havenar-Daughton, Christopher A Cottrell, Judith A Burger, Patricia van der Woude, Leanne C Helgers, Ilhan Tomris, Celia C Labranche, David C Montefiori, Andrew B Ward, Dennis R Burton, John P Moore, Rogier W Sanders, Shane Crotty, George M Shaw, Marit J van Gils | PLoS Pathogens | 2021-08-25 |
| Machine Learning of Bacterial Transcriptomes Reveals Responses Underlying Differential Antibiotic Susceptibility. | Anand V Sastry, Nicholas Dillon, Amitesh Anand, Saugat Poudel, Ying Hefner, Sibei Xu, Richard Szubin, Adam M Feist, Victor Nizet, Bernhard Palsson | MSphere | 2021-08-25 |
| Relating sinking and suspended microbial communities in the California Current Ecosystem: Digestion resistance and the contributions of phytoplankton taxa to export. | Bellineth Valencia, Michael R Stukel, Andrew E Allen, John P McCrow, Ariel Rabines, Brian Palenik, Michael R Landry | Environmental Microbiology | 2021-08-25 |
| Molecular Mirror Technology Facilitates High-Throughput, Accurate SARS-CoV-2 Testing. | Susan Realegeno, Sara Hash, Charlene Wong, Roland Liu, Jovan Shepherd, Robert T Schooley, David A Lipson, Frederick Fung, Suresh Menon, David T Pride | Microbiology Spectrum | 2021-08-25 |
| Antibody secreting cells are critically dependent on integrin α4β7/MAdCAM-1 for intestinal recruitment and control of the microbiota during chronic colitis. | Christopher J Tyler, Mauricio Guzman, Luke R Lundborg, Shaila Yeasmin, Nadia Zgajnar, Paul Jedlicka, Giorgos Bamias, Jesús Rivera-Nieves | Mucosal Immunology | 2021-08-25 |
| Aryl hydrocarbon receptor deficiency in intestinal epithelial cells aggravates alcohol-related liver disease. | Minyi Qian, Jun Liu, Danyang Zhao, Pengpeng Cai, Chuyue Pan, Wenxin Jia, Yingsheng Gao, Yufei Zhang, Nan Zhang, Yinan Zhang, Quan Zhang, Dalei Wu, Chengjie Shan, Meiling Zhang, Bernd Schnabl, Song Yang, Xu Shen, Lirui Wang | Cellular And Molecular Gastroenterology And Hepatology | 2021-08-25 |
| Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo. | Ye Gao, Hyun Gyu Lim, Hans Verkler, Richard Szubin, Daniel Quach, Irina Rodionova, Ke Chen, James T Yurkovich, Byung-Kwan Cho, Bernhard O Palsson | Nucleic Acids Research | 2021-08-24 |
| Early life gut microbiota is associated with rapid infant growth in Hispanics from Southern California. | Tanya L Alderete, Roshonda B Jones, Justin P Shaffer, Elizabeth A Holzhausen, William B Patterson, Elham Kazemian, Lida Chatzi, Rob Knight, Jasmine F Plows, Paige K Berger, Michael I Goran | Gut Microbes | 2021-08-23 |
| Intestinal virome and therapeutic potential of bacteriophages in liver disease. | Cynthia Hsu, Yi Duan, Derrick E Fouts, Bernd Schnabl | Journal Of Hepatology | 2021-08-23 |
| SARS-CoV-2 escape from a highly neutralizing COVID-19 convalescent plasma. | Emanuele Andreano, Giulia Piccini, Danilo Licastro, Lorenzo Casalino, Nicole V Johnson, Ida Paciello, Simeone Dal Monego, Elisa Pantano, Noemi Manganaro, Alessandro Manenti, Rachele Manna, Elisa Casa, Inesa Hyseni, Linda Benincasa, Emanuele Montomoli, Rommie E Amaro, Jason S McLellan, Rino Rappuoli | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-08-21 |
| An integrin αEβ7-dependent mechanism of IgA transcytosis requires direct plasma cell contact with intestinal epithelium. | Mauricio Guzman, Luke R Lundborg, Shaila Yeasmin, Christopher J Tyler, Nadia R Zgajnar, Vanessa Taupin, Katarzyna Dobaczewska, Zbigniew Mikulski, Giorgos Bamias, Jesús Rivera-Nieves | Mucosal Immunology | 2021-08-20 |
| Glycocalyx crowding with mucin mimetics strengthens binding of soluble and virus-associated lectins to host cell glycan receptors. | Daniel J Honigfort, Meghan O Altman, Pascal Gagneux, Kamil Godula | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-08-19 |
| Identification of a transcription factor, PunR, that regulates the purine and purine nucleoside transporter punC in E. coli. | Irina A Rodionova, Ye Gao, Anand Sastry, Ying Hefner, Hyun Gyu Lim, Dmitry A Rodionov, Milton H Saier, Bernhard O Palsson | Communications Biology | 2021-08-19 |
| Host DNA Depletion in Saliva Samples for Improved Shotgun Metagenomics. | Clarisse Marotz, Cristal Zuniga, Livia Zaramela, Rob Knight, Karsten Zengler | Methods In Molecular Biology (Clifton, N.J.) | 2021-08-19 |
| A novel class of TMPRSS2 inhibitors potently block SARS-CoV-2 and MERS-CoV viral entry and protect human epithelial lung cells. | Matthew Mahoney, Vishnu C Damalanka, Michael A Tartell, Dong Hee Chung, André Luiz Lourenço, Dustin Pwee, Anne E Mayer Bridwell, Markus Hoffmann, Jorine Voss, Partha Karmakar, Nurit P Azouz, Andrea M Klingler, Paul W Rothlauf, Cassandra E Thompson, Melody Lee, Lidija Klampfer, Christina L Stallings, Marc E Rothenberg, Stefan Pöhlmann, Sean P J Whelan, Anthony J O'Donoghue, Charles S Craik, James W Janetka | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-08-18 |
| Acremonamide, a Cyclic Pentadepsipeptide with Wound-Healing Properties Isolated from a Marine-Derived Fungus of the Genus . | Sojeong Kim, Chang Wook Lee, So-Yeon Park, Ratnakar N Asolkar, Haerin Kim, Geum Jin Kim, Song Jin Oh, Youngbae Kim, Eun-Young Lee, Dong-Chan Oh, Inho Yang, Man Jeong Paik, Hyukjae Choi, Hangun Kim, Sang-Jip Nam, William Fenical | Journal Of Natural Products | 2021-08-13 |
| Decreased Antibody Responses to Ad26.COV2.S Relative to SARS-CoV-2 mRNA Vaccines in Patients With Inflammatory Bowel Disease. | Valeriya Pozdnyakova, Gregory J Botwin, Kimia Sobhani, John Prostko, Jonathan Braun, Dermot P B Mcgovern, Gil Y Melmed, Keren Appel, Andrea Banty, Edward Feldman, Christina Ha, Rashmi Kumar, Susie Lee, Shervin Rabizadeh, Theodore Stein, Gaurav Syal, Stephan Targan, Eric Vasiliauskas, David Ziring, Philip Debbas, Melissa Hampton, Emebet Mengesha, James L Stewart, Edwin C Frias, Susan Cheng, Joseph Ebinger, Jane C Figueiredo, Brigid Boland, Aline Charabaty, Michael Chiorean, Erica Cohen, Ann Flynn, John Valentine, David Fudman, Arash Horizon, Jason Hou, Caroline Hwang, Mark Lazarev, Donald Lum, Rebecca Fausel, Swapna Reddy, Mark Mattar, Mark Metwally, Arthur Ostrov, Nimisha Parekh, Laura Raffals, Sarah Sheibani, Corey Siegel, Douglas Wolf, Ziad Younes | Gastroenterology | 2021-08-12 |
| Microbiota and Fatty Liver Disease-the Known, the Unknown, and the Future. | Sonja Lang, Bernd Schnabl | Cell Host & Microbe | 2021-08-12 |
| Risk factors for COVID-19 mortality in hospitalised children and adolescents in Brazil - Authors' reply. | Eduardo A Oliveira, Enrico A Colosimo, Ana Cristina Simões E Silva, Robert H Mak, Daniella B Martelli, Ludmila R Silva, Hercílio Martelli-Júnior, Maria Christina L Oliveira | The Lancet. Child & Adolescent Health | 2021-08-10 |
| Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus. | Smruthi Karthikeyan, Andrew Nguyen, Daniel McDonald, Yijian Zong, Nancy Ronquillo, Junting Ren, Jingjing Zou, Sawyer Farmer, Greg Humphrey, Diana Henderson, Tara Javidi, Karen Messer, Cheryl Anderson, Robert Schooley, Natasha K Martin, Rob Knight | MSystems | 2021-08-10 |
| Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. | Aleksandar Antanasijevic, Leigh M Sewall, Christopher A Cottrell, Diane G Carnathan, Luis E Jimenez, Julia T Ngo, Jennifer B Silverman, Bettina Groschel, Erik Georgeson, Jinal Bhiman, Raiza Bastidas, Celia LaBranche, Joel D Allen, Jeffrey Copps, Hailee R Perrett, Kimmo Rantalainen, Fabien Cannac, Yuhe R Yang, Alba Torrents de la Peña, Rebeca Froes Rocha, Zachary T Berndsen, David Baker, Neil P King, Rogier W Sanders, John P Moore, Shane Crotty, Max Crispin, David C Montefiori, Dennis R Burton, William R Schief, Guido Silvestri, Andrew B Ward | Nature Communications | 2021-08-10 |
| Clinical Practice Guideline by the Pediatric Infectious Diseases Society and the Infectious Diseases Society of America: 2021 Guideline on Diagnosis and Management of Acute Hematogenous Osteomyelitis in Pediatrics. | Charles R Woods, John S Bradley, Archana Chatterjee, Lawson A Copley, Joan Robinson, Matthew P Kronman, Antonio Arrieta, Sandra L Fowler, Christopher Harrison, Maria A Carrillo-Marquez, Sandra R Arnold, Stephen C Eppes, Laura P Stadler, Coburn H Allen, Lynnette J Mazur, C Buddy Creech, Samir S Shah, Theoklis Zaoutis, David S Feldman, Valéry Lavergne | Journal Of The Pediatric Infectious Diseases Society | 2021-08-05 |
| Chemical Gradients of Plant Substrates in an Fungus Garden. | Andrés Mauricio Caraballo-Rodríguez, Sara P Puckett, Kathleen E Kyle, Daniel Petras, Ricardo da Silva, Louis-Félix Nothias, Madeleine Ernst, Justin J J van der Hooft, Anupriya Tripathi, Mingxun Wang, Marcy J Balunas, Jonathan L Klassen, Pieter C Dorrestein | MSystems | 2021-08-03 |
| Variation in Microbial Exposure at the Human-Animal Interface and the Implications for Microbiome-Mediated Health Outcome. | Sahana Kuthyar, Aspen T Reese | MSystems | 2021-08-03 |
| Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom. | Aaron Oliver, Sheila Podell, Agnieszka Pinowska, Jesse C Traller, Sarah R Smith, Ryan McClure, Alex Beliaev, Pavlo Bohutskyi, Eric A Hill, Ariel Rabines, Hong Zheng, Lisa Zeigler Allen, Alan Kuo, Igor V Grigoriev, Andrew E Allen, David Hazlebeck, Eric E Allen | Scientific Reports | 2021-08-02 |
| Sleep Disturbances are a Significant Predictor of Chikungunya Arthritis Flare Severity. | Sarah R Tritsch, Richard Amdur, Liliana Encinales, Andres Cadena, Paige Fierbaugh, Geraldine Avendaño, Carlos Andres Herrera Gomez, Karol Suchowiecki, Evelyn Mendoza-Torres, Wendy Rosales, Dennys Jimenez, Carlos Alberto Perez Hernandez, Alfonso Sucerquia Hernandez, Paula Bruges Silvera, Yerlenis Galvis Crespo, Alberto David Cabana Jimenez, Jennifer Carolina Martinez Zapata, Christopher N Mores, Gary S Firestein, Gary Simon, Aileen Y Chang | Journal Of Cellular Immunology | 2021-07-29 |
| Comparative genomic analysis of obligately piezophilic DB21MT-5 reveals bacterial adaptation to the Challenger Deep, Mariana Trench. | Wei-Jia Zhang, Chan Zhang, Siyu Zhou, Xue-Gong Li, Sophie Mangenot, Stéphanie Fouteau, Thomas Guerin, Xiao-Qing Qi, Jian Yang, Douglas H Bartlett, Long-Fei Wu | Microbial Genomics | 2021-07-28 |
| Oxitec and MosquitoMate in the United States: lessons for the future of gene drive mosquito control. | Cynthia E Schairer, James Najera, Anthony A James, Omar S Akbari, Cinnamon S Bloss | Pathogens And Global Health | 2021-07-27 |
| Dietary selection pressures and their impact on the gut microbiome. | Gertrude Ecklu-Mensah, Jack Gilbert, Suzanne Devkota | Cellular And Molecular Gastroenterology And Hepatology | 2021-07-27 |
| Emergence of an early SARS-CoV-2 epidemic in the United States. | Mark Zeller, Karthik Gangavarapu, Catelyn Anderson, Allison R Smither, John A Vanchiere, Rebecca Rose, Daniel J Snyder, Gytis Dudas, Alexander Watts, Nathaniel L Matteson, Refugio Robles-Sikisaka, Maximilian Marshall, Amy K Feehan, Gilberto Sabino-Santos, Antoinette R Bell-Kareem, Laura D Hughes, Manar Alkuzweny, Patricia Snarski, Julia Garcia-Diaz, Rona S Scott, Lilia I Melnik, Raphaëlle Klitting, Michelle McGraw, Pedro Belda-Ferre, Peter DeHoff, Shashank Sathe, Clarisse Marotz, Nathan D Grubaugh, David J Nolan, Arnaud C Drouin, Kaylynn J Genemaras, Karissa Chao, Sarah Topol, Emily Spencer, Laura Nicholson, Stefan Aigner, Gene W Yeo, Lauge Farnaes, Charlotte A Hobbs, Louise C Laurent, Rob Knight, Emma B Hodcroft, Kamran Khan, Dahlene N Fusco, Vaughn S Cooper, Phillipe Lemey, Lauren Gardner, Susanna L Lamers, Jeremy P Kamil, Robert F Garry, Marc A Suchard, Kristian G Andersen | Cell | 2021-07-27 |
| ACE2 Receptor-Modified Algae-Based Microrobot for Removal of SARS-CoV-2 in Wastewater. | Fangyu Zhang, Zhengxing Li, Lu Yin, Qiangzhe Zhang, Nelly Askarinam, Rodolfo Mundaca-Uribe, Farshad Tehrani, Emil Karshalev, Weiwei Gao, Liangfang Zhang, Joseph Wang | Journal Of The American Chemical Society | 2021-07-22 |
| Forming Consensus To Advance Urobiome Research. | Linda Brubaker, Jean-Philippe F Gourdine, Nazema Y Siddiqui, Amanda Holland, Thomas Halverson, Roberto Limeria, David Pride, Lenore Ackerman, Catherine S Forster, Kristin M Jacobs, Krystal J Thomas-White, Catherine Putonti, Qunfeng Dong, Michael Weinstein, Emily S Lukacz, Lisa Karstens, Alan J Wolfe | MSystems | 2021-07-20 |
| Nutritional Interventions and the Gut Microbiome in Children. | Saurabh Mehta, Samantha L Huey, Daniel McDonald, Rob Knight, Julia L Finkelstein | Annual Review Of Nutrition | 2021-07-20 |
| Association Between the Urogenital Microbiome and Surgical Treatment Response in Women Undergoing Mid-urethral Sling Surgery for Mixed Urinary Incontinence. | Holly E Richter, Megan U Carnes, Yuko M Komesu, Emily S Lukacz, Lily Arya, Megan Bradley, Rebecca G Rogers, Vivian W Sung, Nazema Y Siddiqui, Benjamin Carper, Donna Mazloomdoost, Darryl Dinwiddie, Marie G Gantz, | American Journal Of Obstetrics And Gynecology | 2021-07-20 |
| Special Collection on the Microbiome and Infection. | Manuela Raffatellu, Andreas J Bäumler | Infection And Immunity | 2021-07-19 |
| Comparison of heat-inactivated and infectious SARS-CoV-2 across indoor surface materials shows comparable RT-qPCR viral signal intensity and persistence. | Rodolfo A Salido, Victor J Cantú, Alex E Clark, Sandra L Leibel, Anahid Foroughishafiei, Anushka Saha, Abbas Hakim, Alhakam Nouri, Alma L Lastrella, Anelizze Castro-Martínez, Ashley Plascencia, Bhavika Kapadia, Bing Xia, Christopher Ruiz, Clarisse A Marotz, Daniel Maunder, Elijah S Lawrence, Elizabeth W Smoot, Emily Eisner, Evelyn S Crescini, Laura Kohn, Lizbeth Franco Vargas, Marisol Chacón, Maryann Betty, Michal Machnicki, Min Yi Wu, Nathan A Baer, Pedro Belda-Ferre, Peter De Hoff, Phoebe Seaver, R Tyler Ostrander, Rebecca Tsai, Shashank Sathe, Stefan Aigner, Sydney C Morgan, Toan T Ngo, Tom Barber, Willi Cheung, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Rebecca Fielding-Miller, Rob Knight | BioRxiv : The Preprint Server For Biology | 2021-07-19 |
| Dynamic Changes of the Fungal Microbiome in Alcohol Use Disorder. | Phillipp Hartmann, Sonja Lang, Suling Zeng, Yi Duan, Xinlian Zhang, Yanhan Wang, Marina Bondareva, Andrey Kruglov, Derrick E Fouts, Peter Stärkel, Bernd Schnabl | Frontiers In Physiology | 2021-07-19 |
| Portobelamides A and B and Caciqueamide, Cytotoxic Peptidic Natural Products from a sp. Marine Cyanobacterium. | Ozlem Demirkiran, Jehad Almaliti, Tiago Leão, Gabriel Navarro, Tara Byrum, Frederick A Valeriote, Lena Gerwick, William H Gerwick | Journal Of Natural Products | 2021-07-16 |
| Synthetic algal-bacteria consortia for space-efficient microalgal growth in a simple hydrogel system. | Noah Martin, Tatum Bernat, Julie Dinasquet, Andrea Stofko, April Damon, Dimitri D Deheyn, Farooq Azam, Jennifer E Smith, Matthew P Davey, Alison G Smith, Silvia Vignolini, Daniel Wangpraseurt | Journal Of Applied Phycology | 2021-07-15 |
| The microbiome and prostate cancer. | Juan Javier-DesLoges, Rana R McKay, Austin D Swafford, Gregory D Sepich-Poore, Rob Knight, J Kellogg Parsons | Prostate Cancer And Prostatic Diseases | 2021-07-15 |
| A Pilot Study of Microbial Succession in Human Rib Skeletal Remains during Terrestrial Decomposition. | Heather Deel, Alexandra L Emmons, Jennifer Kiely, Franklin E Damann, David O Carter, Aaron Lynne, Rob Knight, Zhenjiang Zech Xu, Sibyl Bucheli, Jessica L Metcalf | MSphere | 2021-07-14 |
| Genetic regulation of nonsense-mediated decay underlies association with risk of severe COVID-19. | A Rouf Banday, Megan L Stanifer, Oscar Florez-Vargas, Olusegun O Onabajo, Muhammad A Zahoor, Brenen W Papenberg, Timothy J Ring, Chia-Han Lee, Evangelos Andreakos, Evgeny Arons, Greg Barsh, Leslie G Biesecker, David L Boyle, Andrea Burnett-Hartman, Mary Carrington, Euijin Chang, Pyoeng Gyun Choe, Rex L Chrisholm, Clifton Dalgard, Jeff Edberg, Nathan Erdmann, Heather S Feigelson, Gary S Firestein, Adam J Gehring, Michelle Ho, Steven Holland, Amy A Hutchinson, Hogune Im, Michael G Ison, Hong Bin Kim, Robert J Kreitman, Bruce R Korf, Lisa Mirabello, Jennifer A Pacheco, Michael J Peluso, Daniel J Rader, David T Redden, Marylyn D Ritchie, Brooke Rosenbloom, Hanaisa P Sant Anna, Sharon Savage, Eleni Siouti, Vasiliki Triantafyllia, Joselin M Vargas, Anurag Verma, Vibha Vij, Duane R Wesemann, Meredith Yeager, Xu Yu, Yu Zhang, Steeve Boulant, Stephen J Chanock, Jordan J Feld, Ludmila Prokunina-Olsson | MedRxiv : The Preprint Server For Health Sciences | 2021-07-13 |
| HIV vaccinology: 2021 update. | Jeong Hyun Lee, Shane Crotty | Seminars In Immunology | 2021-07-13 |
| A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity. | Gongchao Jing, Yufeng Zhang, Lu Liu, Zengbin Wang, Zheng Sun, Rob Knight, Xiaoquan Su, Jian Xu | MSystems | 2021-07-13 |
| Artificial intelligence guided discovery of a barrier-protective therapy in inflammatory bowel disease. | Debashis Sahoo, Lee Swanson, Ibrahim M Sayed, Gajanan D Katkar, Stella-Rita Ibeawuchi, Yash Mittal, Rama F Pranadinata, Courtney Tindle, Mackenzie Fuller, Dominik L Stec, John T Chang, William J Sandborn, Soumita Das, Pradipta Ghosh | Nature Communications | 2021-07-12 |
| Quick-start infrastructure for untargeted metabolomics analysis in GNPS. | Tiago F Leao, Chase M Clark, Anelize Bauermeister, Emmanuel O Elijah, Emily C Gentry, Makhai Husband, Michelli F Oliveira, Nuno Bandeira, Mingxun Wang, Pieter C Dorrestein | Nature Metabolism | 2021-07-09 |
| Publisher Correction: Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery. | Bahar Behsaz, Edna Bode, Alexey Gurevich, Yan-Ni Shi, Florian Grundmann, Deepa Acharya, Andrés Mauricio Caraballo-Rodríguez, Amina Bouslimani, Morgan Panitchpakdi, Annabell Linck, Changhui Guan, Julia Oh, Pieter C Dorrestein, Helge B Bode, Pavel A Pevzner, Hosein Mohimani | Nature Communications | 2021-07-08 |
| Genome-wide CRISPR/Cas9 screening in human iPS derived cardiomyocytes uncovers novel mediators of doxorubicin cardiotoxicity. | Valerie Sapp, Aitor Aguirre, Gayatri Mainkar, Jeffrey Ding, Eric Adler, Ronglih Liao, Sonia Sharma, Mohit Jain | Scientific Reports | 2021-07-06 |
| Ruminiclostridium 5, Parabacteroides distasonis, and bile acid profile are modulated by prebiotic diet and associate with facilitated sleep/clock realignment after chronic disruption of rhythms. | Robert S Thompson, Michelle Gaffney, Shelby Hopkins, Tel Kelley, Antonio Gonzalez, Samuel J Bowers, Martha Hotz Vitaterna, Fred W Turek, Christine L Foxx, Christopher A Lowry, Fernando Vargas, Pieter C Dorrestein, Kenneth P Wright, Rob Knight, Monika Fleshner | Brain, Behavior, And Immunity | 2021-07-06 |
| Microbiome is not linked to clinical disease severity of familial Mediterranean fever in an international cohort of children. | Seza Ozen, Holly L Lutz, Vanessa M Rivera, Andreas Reiff, Ezgi Deniz Batu, Edwin Anderson, Mariana Salas Garcia, Grace Aldrovandi, Tayfun Hilmi Akbaba, İlker Pazarbasi, Yelda Bilginer, Ayse Balat, Banu Balci-Peynircioglu, Jack A Gilbert, Fatma Dedeoglu, Jonathan S Hausmann | Clinical And Experimental Rheumatology | 2021-07-05 |
| Impact of SARS-CoV-2 variants on the total CD4 and CD8 T cell reactivity in infected or vaccinated individuals. | Alison Tarke, John Sidney, Nils Methot, Esther Dawen Yu, Yun Zhang, Jennifer M Dan, Benjamin Goodwin, Paul Rubiro, Aaron Sutherland, Eric Wang, April Frazier, Sydney I Ramirez, Stephen A Rawlings, Davey M Smith, Ricardo da Silva Antunes, Bjoern Peters, Richard H Scheuermann, Daniela Weiskopf, Shane Crotty, Alba Grifoni, Alessandro Sette | Cell Reports. Medicine | 2021-07-02 |
| Gut Microbiota in Liver Disease: What Do We Know and What Do We Not Know? | Lu Jiang, Bernd Schnabl | Physiology (Bethesda, Md.) | 2021-07-01 |
| Display of the human mucinome with defined O-glycans by gene engineered cells. | Rebecca Nason, Christian Büll, Andriana Konstantinidi, Lingbo Sun, Zilu Ye, Adnan Halim, Wenjuan Du, Daniel M Sørensen, Fabien Durbesson, Sanae Furukawa, Ulla Mandel, Hiren J Joshi, Leo Alexander Dworkin, Lars Hansen, Leonor David, Tina M Iverson, Barbara A Bensing, Paul M Sullam, Ajit Varki, Erik de Vries, Cornelis A M de Haan, Renaud Vincentelli, Bernard Henrissat, Sergey Y Vakhrushev, Henrik Clausen, Yoshiki Narimatsu | Nature Communications | 2021-07-01 |
| The Relationships between HIV-1 Infection, History of Methamphetamine Use Disorder, and Soluble Biomarkers in Blood and Cerebrospinal Fluid. | T Jordan Walter, Jennifer Iudicello, Debra Rosario Cookson, Donald Franklin, Bin Tang, Jared W Young, William Perry, Ronald Ellis, Robert K Heaton, Igor Grant, Arpi Minassian, Scott Letendre, On Behalf Of The Translational Methamphetamine Aids Research Center Tmarc | Viruses | 2021-07-01 |
| Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome. | Shi Huang, Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu, Pedro Belda-Ferre, Yoshiki Vázquez-Baeza, Qiyun Zhu, Chenchen Ma, Congfa Li, Amir Zarrinpar, Yang-Yu Liu, Rob Knight, Jiachao Zhang | Microbiome | 2021-06-30 |
| Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome. | Celeste Allaband, Amulya Lingaraju, Cameron Martino, Baylee Russell, Anupriya Tripathi, Orit Poulsen, Ana Carolina Dantas Machado, Dan Zhou, Jin Xue, Emmanuel Elijah, Atul Malhotra, Pieter C Dorrestein, Rob Knight, Gabriel G Haddad, Amir Zarrinpar | MSystems | 2021-06-29 |
| The neglected brothers come of age: B cells and cancer. | Shabnam Shalapour, Michael Karin | Seminars In Immunology | 2021-06-29 |
| ORFograph: search for novel insecticidal protein genes in genomic and metagenomic assembly graphs. | Tatiana Dvorkina, Anton Bankevich, Alexei Sorokin, Fan Yang, Boahemaa Adu-Oppong, Ryan Williams, Keith Turner, Pavel A Pevzner | Microbiome | 2021-06-28 |
| Associations between Afrotropical bats, eukaryotic parasites, and microbial symbionts. | Holly L Lutz, Jack A Gilbert, Carl W Dick | Molecular Ecology | 2021-06-28 |
| Microbiota Modulates Cardiac Transcriptional Responses to Intermittent Hypoxia and Hypercapnia. | Dan Zhou, Jin Xue, Yukiko Miyamoto, Orit Poulsen, Lars Eckmann, Gabriel G Haddad | Frontiers In Physiology | 2021-06-25 |
| Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus. | Henrique Machado, Yara Seif, George Sakoulas, Connor A Olson, Ying Hefner, Amitesh Anand, Ying Z Jones, Richard Szubin, Bernhard O Palsson, Victor Nizet, Adam M Feist | Communications Biology | 2021-06-25 |
| Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops. | Matthew R Dillon, Evan Bolyen, Anja Adamov, Aeriel Belk, Emily Borsom, Zachary Burcham, Justine W Debelius, Heather Deel, Alex Emmons, Mehrbod Estaki, Chloe Herman, Christopher R Keefe, Jamie T Morton, Renato R M Oliveira, Andrew Sanchez, Anthony Simard, Yoshiki Vázquez-Baeza, Michal Ziemski, Hazuki E Miwa, Terry A Kerere, Carline Coote, Richard Bonneau, Rob Knight, Guilherme Oliveira, Piraveen Gopalasingam, Benjamin D Kaehler, Emily K Cope, Jessica L Metcalf, Michael S Robeson Ii, Nicholas A Bokulich, J Gregory Caporaso | PLoS Computational Biology | 2021-06-24 |
| induces maize-derived ethylene to promote virulence by engaging fungal G-protein signaling. | Yong-Soon Park, Eli J Borrego, Xiquan Gao, Shawn A Christensen, Eric Schmelz, Alessandra Lanubile, Dillon A Drab, Will Cody, Huijuan Yan, Won-Bo Shim, Michael V Kolomiets | Molecular Plant-microbe Interactions : MPMI | 2021-06-24 |
| Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth. | Colton J Lloyd, Jonathan Monk, Laurence Yang, Ali Ebrahim, Bernhard O Palsson | PLoS Computational Biology | 2021-06-23 |
| Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment. | Robin Schmid, Daniel Petras, Louis-Félix Nothias, Mingxun Wang, Allegra T Aron, Annika Jagels, Hiroshi Tsugawa, Johannes Rainer, Mar Garcia-Aloy, Kai Dührkop, Ansgar Korf, Tomáš Pluskal, Zdeněk Kameník, Alan K Jarmusch, Andrés Mauricio Caraballo-Rodríguez, Kelly C Weldon, Melissa Nothias-Esposito, Alexander A Aksenov, Anelize Bauermeister, Andrea Albarracin Orio, Carlismari O Grundmann, Fernando Vargas, Irina Koester, Julia M Gauglitz, Emily C Gentry, Yannick Hövelmann, Svetlana A Kalinina, Matthew A Pendergraft, Morgan Panitchpakdi, Richard Tehan, Audrey Le Gouellec, Gajender Aleti, Helena Mannochio Russo, Birgit Arndt, Florian Hübner, Heiko Hayen, Hui Zhi, Manuela Raffatellu, Kimberly A Prather, Lihini I Aluwihare, Sebastian Böcker, Kerry L McPhail, Hans-Ulrich Humpf, Uwe Karst, Pieter C Dorrestein | Nature Communications | 2021-06-22 |
| Gut microbiota mediate the FGF21 adaptive stress response to chronic dietary protein-restriction in mice. | Anthony Martin, Gertrude Ecklu-Mensah, Connie W Y Ha, Gustaf Hendrick, Donald K Layman, Jack Gilbert, Suzanne Devkota | Nature Communications | 2021-06-22 |
| Editorial: Regulators of a Regulator: Post-Transcriptional Regulation in Tregs. | Xuyu Zhou, Li-Fan Lu | Frontiers In Immunology | 2021-06-22 |
| The single-cell epigenomic and transcriptional landscape of immunity to influenza vaccination. | Florian Wimmers, Michele Donato, Alex Kuo, Tal Ashuach, Shakti Gupta, Chunfeng Li, Mai Dvorak, Mariko Hinton Foecke, Sarah E Chang, Thomas Hagan, Sanne E De Jong, Holden T Maecker, Robbert van der Most, Peggie Cheung, Mario Cortese, Steven E Bosinger, Mark Davis, Nadine Rouphael, Shankar Subramaniam, Nir Yosef, Paul J Utz, Purvesh Khatri, Bali Pulendran | Cell | 2021-06-22 |
| Alterations in bile acid metabolizing gut microbiota and specific bile acid genes as a precision medicine to subclassify NAFLD. | Na Jiao, Rohit Loomba, Zi-Huan Yang, Dingfeng Wu, Sa Fang, Richele Bettencourt, Ping Lan, Ruixin Zhu, Lixin Zhu | Physiological Genomics | 2021-06-21 |
| Naturalization of the microbiota developmental trajectory of Cesarean-born neonates after vaginal seeding. | Se Jin Song, Jincheng Wang, Cameron Martino, Lingjing Jiang, Wesley K Thompson, Liat Shenhav, Daniel McDonald, Clarisse Marotz, Paul R Harris, Caroll D Hernandez, Nora Henderson, Elizabeth Ackley, Deanna Nardella, Charles Gillihan, Valentina Montacuti, William Schweizer, Melanie Jay, Joan Combellick, Haipeng Sun, Izaskun Garcia-Mantrana, Fernando Gil Raga, Maria Carmen Collado, Juana I Rivera-Viñas, Maribel Campos-Rivera, Jean F Ruiz-Calderon, Rob Knight, Maria Gloria Dominguez-Bello | Med (New York, N.Y.) | 2021-06-17 |
| The Cocaine and Oxycodone Biobanks, Two Repositories from Genetically Diverse and Behaviorally Characterized Rats for the Study of Addiction. | Lieselot L G Carrette, Giordano de Guglielmo, Marsida Kallupi, Lisa Maturin, Molly Brennan, Brent Boomhower, Dana Conlisk, Sharona Sedighim, Lani Tieu, McKenzie J Fannon, Nathan Velarde, Angelica R Martinez, Jenni Kononoff, Adam Kimbrough, Sierra Simpson, Lauren C Smith, Kokila Shankar, Francisco J Ramirez, Apurva S Chitre, Bonnie Lin, Oksana Polesskaya, Leah C Solberg Woods, Abraham A Palmer, Olivier George | ENeuro | 2021-06-17 |
| Use of Autologous Bacteriotherapy to Treat Staphylococcus aureus in Patients With Atopic Dermatitis: A Randomized Double-blind Clinical Trial. | Teruaki Nakatsuji, Richard L Gallo, Faiza Shafiq, Yun Tong, Kimberly Chun, Anna M Butcher, Joyce Y Cheng, Tissa R Hata | JAMA Dermatology | 2021-06-16 |
| Host and gut microbial tryptophan metabolism and type 2 diabetes: an integrative analysis of host genetics, diet, gut microbiome and circulating metabolites in cohort studies. | Qibin Qi, Jun Li, Bing Yu, Jee-Young Moon, Jin C Chai, Jordi Merino, Jie Hu, Miguel Ruiz-Canela, Casey Rebholz, Zheng Wang, Mykhaylo Usyk, Guo-Chong Chen, Bianca C Porneala, Wenshuang Wang, Ngoc Quynh Nguyen, Elena V Feofanova, Megan L Grove, Thomas J Wang, Robert E Gerszten, Josée Dupuis, Jordi Salas-Salvadó, Wei Bao, David L Perkins, Martha L Daviglus, Bharat Thyagarajan, Jianwen Cai, Tao Wang, JoAnn E Manson, Miguel A Martínez-González, Elizabeth Selvin, Kathryn M Rexrode, Clary B Clish, Frank B Hu, James B Meigs, Rob Knight, Robert D Burk, Eric Boerwinkle, Robert C Kaplan | Gut | 2021-06-14 |
| Colesevelam Reduces Ethanol-Induced Liver Steatosis in Humanized Gnotobiotic Mice. | Noemí Cabré, Yi Duan, Cristina Llorente, Mary Conrad, Patrick Stern, Dennis Yamashita, Bernd Schnabl | Cells | 2021-06-14 |
| AI-guided discovery of the invariant host response to viral pandemics. | Debashis Sahoo, Gajanan D Katkar, Soni Khandelwal, Mahdi Behroozikhah, Amanraj Claire, Vanessa Castillo, Courtney Tindle, MacKenzie Fuller, Sahar Taheri, Thomas F Rogers, Nathan Beutler, Sydney I Ramirez, Stephen A Rawlings, Victor Pretorius, Davey M Smith, Dennis R Burton, Laura E Crotty Alexander, Jason Duran, Shane Crotty, Jennifer M Dan, Soumita Das, Pradipta Ghosh | EBioMedicine | 2021-06-11 |
| Clinical characteristics and risk factors for death among hospitalised children and adolescents with COVID-19 in Brazil: an analysis of a nationwide database. | Eduardo A Oliveira, Enrico A Colosimo, Ana Cristina Simões E Silva, Robert H Mak, Daniella B Martelli, Ludmila R Silva, Hercílio Martelli-Júnior, Maria Christina L Oliveira | The Lancet. Child & Adolescent Health | 2021-06-11 |
| Metformin inhibition of mitochondrial ATP and DNA synthesis abrogates NLRP3 inflammasome activation and pulmonary inflammation. | Hongxu Xian, Yuan Liu, Alexandra Rundberg Nilsson, Raphaella Gatchalian, Timothy R Crother, Warren G Tourtellotte, Yi Zhang, German R Aleman-Muench, Gavin Lewis, Weixuan Chen, Sarah Kang, Melissa Luevanos, Dorit Trudler, Stuart A Lipton, Pejman Soroosh, John Teijaro, Juan Carlos de la Torre, Moshe Arditi, Michael Karin, Elsa Sanchez-Lopez | Immunity | 2021-06-10 |
| Social network analysis and whole-genome sequencing to evaluate disease transmission in a large, dynamic population: A study of avian mycobacteriosis in zoo birds. | Carmel Witte, James H Fowler, Wayne Pfeiffer, Laura L Hungerford, Josephine Braun, Jennifer Burchell, Rebecca Papendick, Bruce A Rideout | PloS One | 2021-06-09 |
| A segmentation clock patterns cellular differentiation in a bacterial biofilm. | Kwang-Tao Chou, Dong-Yeon D Lee, Jian-Geng Chiou, Leticia Galera-Laporta, San Ly, Jordi Garcia-Ojalvo, Gürol M Süel | Cell | 2021-06-09 |
| SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment. | Clarisse Marotz, Pedro Belda-Ferre, Farhana Ali, Promi Das, Shi Huang, Kalen Cantrell, Lingjing Jiang, Cameron Martino, Rachel E Diner, Gibraan Rahman, Daniel McDonald, George Armstrong, Sho Kodera, Sonya Donato, Gertrude Ecklu-Mensah, Neil Gottel, Mariana C Salas Garcia, Leslie Y Chiang, Rodolfo A Salido, Justin P Shaffer, Mac Kenzie Bryant, Karenina Sanders, Greg Humphrey, Gail Ackermann, Niina Haiminen, Kristen L Beck, Ho-Cheol Kim, Anna Paola Carrieri, Laxmi Parida, Yoshiki Vázquez-Baeza, Francesca J Torriani, Rob Knight, Jack Gilbert, Daniel A Sweeney, Sarah M Allard | Microbiome | 2021-06-08 |
| Maternal milk microbiota and oligosaccharides contribute to the infant gut microbiota assembly. | Martin Frederik Laursen, Ceyda T Pekmez, Melanie Wange Larsson, Mads Vendelbo Lind, Chloe Yonemitsu, Anni Larnkjær, Christian Mølgaard, Lars Bode, Lars Ove Dragsted, Kim F Michaelsen, Tine Rask Licht, Martin Iain Bahl | ISME Communications | 2021-06-07 |
| Airborne transmission pathway for coastal water pollution. | Matthew A Pendergraft, Derek J Grimes, Sarah N Giddings, Falk Feddersen, Charlotte M Beall, Christopher Lee, Mitchell V Santander, Kimberly A Prather | PeerJ | 2021-06-07 |
| Assessment of patient recognition of coronavirus disease 2019 (COVID-19)-associated olfactory loss and recovery: a longitudinal study. | Divya P Prajapati, Bita Shahrvini, Mena Said, Shanmukha Srinivas, Adam S DeConde, Carol H Yan | International Forum Of Allergy & Rhinology | 2021-06-06 |
| Coevolutionary phage training leads to greater bacterial suppression and delays the evolution of phage resistance. | Joshua M Borin, Sarit Avrani, Jeffrey E Barrick, Katherine L Petrie, Justin R Meyer | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-06-04 |
| Mining genomes to illuminate the specialized chemistry of life. | Marnix H Medema, Tristan de Rond, Bradley S Moore | Nature Reviews. Genetics | 2021-06-03 |
| Biotechnology for secure biocontainment designs in an emerging bioeconomy. | Kathleen L Arnolds, Lukas R Dahlin, Lin Ding, Chao Wu, Jianping Yu, Wei Xiong, Cristal Zuniga, Yo Suzuki, Karsten Zengler, Jeffrey G Linger, Michael T Guarnieri | Current Opinion In Biotechnology | 2021-06-03 |
| Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers. | Qiyun Zhu, Qiangchuan Hou, Shi Huang, Qianying Ou, Dongxue Huo, Yoshiki Vázquez-Baeza, Chaoping Cen, Victor Cantu, Mehrbod Estaki, Haibo Chang, Pedro Belda-Ferre, Ho-Cheol Kim, Kaining Chen, Rob Knight, Jiachao Zhang | The ISME Journal | 2021-06-02 |
| Compositional Differences in the Oral Microbiome of E-cigarette Users. | Jessica Chopyk, Christine M Bojanowski, John Shin, Alex Moshensky, Ana Lucia Fuentes, Saniya S Bonde, Dagni Chuki, David T Pride, Laura E Crotty Alexander | Frontiers In Microbiology | 2021-05-31 |
| Individuals with substance use disorders have a distinct oral microbiome pattern. | Tomasz Kosciolek, Teresa A Victor, Rayus Kuplicki, Maret Rossi, Mehrbod Estaki, Gail Ackermann, , Rob Knight, Martin P Paulus | Brain, Behavior, & Immunity - Health | 2021-05-29 |
| Non-alcoholic Steatohepatitis and HCC in a Hyperphagic Mouse Accelerated by Western Diet. | Souradipta Ganguly, German Aleman Muench, Linshan Shang, Sara Brin Rosenthal, Gibraan Rahman, Ruoyu Wang, Yanhan Wang, Hyeok Choon Kwon, Anthony M Diomino, Tatiana Kisseleva, Pejman Soorosh, Mojgan Hosseini, Rob Knight, Bernd Schnabl, David A Brenner, Debanjan Dhar | Cellular And Molecular Gastroenterology And Hepatology | 2021-05-29 |
| Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery. | Bahar Behsaz, Edna Bode, Alexey Gurevich, Yan-Ni Shi, Florian Grundmann, Deepa Acharya, Andrés Mauricio Caraballo-Rodríguez, Amina Bouslimani, Morgan Panitchpakdi, Annabell Linck, Changhui Guan, Julia Oh, Pieter C Dorrestein, Helge B Bode, Pavel A Pevzner, Hosein Mohimani | Nature Communications | 2021-05-28 |
| COVID-19 Severity Potentially Modulated by Cardiovascular-Disease-Associated Immune Dysregulation. | Abby C Lee, Grant Castaneda, Wei Tse Li, Chengyu Chen, Neil Shende, Jaideep Chakladar, Pam R Taub, Eric Y Chang, Weg M Ongkeko | Viruses | 2021-05-28 |
| Transmission of SARS-CoV-2: still up in the air - Authors' reply. | Trisha Greenhalgh, Jose L Jimenez, Kimberly A Prather, Zeynep Tufeki, David Fisman, Robert Schooley | Lancet (London, England) | 2021-05-28 |
| Recurrent urinary tract infection: Association of clinical profiles with urobiome composition in women. | Lindsey A Burnett, Baylie R Hochstedler, Kelly Weldon, Alan J Wolfe, Linda Brubaker | Neurourology And Urodynamics | 2021-05-26 |
| Bromodomain protein BRD4 directs and sustains CD8 T cell differentiation during infection. | J Justin Milner, Clara Toma, Sara Quon, Kyla Omilusik, Nicole E Scharping, Anup Dey, Miguel Reina-Campos, Hongtuyet Nguyen, Adam J Getzler, Huitian Diao, Bingfei Yu, Arnaud Delpoux, Tomomi M Yoshida, Deyao Li, Jun Qi, Adam Vincek, Stephen M Hedrick, Takeshi Egawa, Ming-Ming Zhou, Shane Crotty, Keiko Ozato, Matthew E Pipkin, Ananda W Goldrath | The Journal Of Experimental Medicine | 2021-05-26 |
| Structure-based protein function prediction using graph convolutional networks. | Vladimir Gligorijević, P Douglas Renfrew, Tomasz Kosciolek, Julia Koehler Leman, Daniel Berenberg, Tommi Vatanen, Chris Chandler, Bryn C Taylor, Ian M Fisk, Hera Vlamakis, Ramnik J Xavier, Rob Knight, Kyunghyun Cho, Richard Bonneau | Nature Communications | 2021-05-26 |
| The quantitative metabolome is shaped by abiotic constraints. | Amir Akbari, James T Yurkovich, Daniel C Zielinski, Bernhard O Palsson | Nature Communications | 2021-05-26 |
| Kawasaki Disease Patient Stratification and Pathway Analysis Based on Host Transcriptomic and Proteomic Profiles. | Heather Jackson, Stephanie Menikou, Shea Hamilton, Andrew McArdle, Chisato Shimizu, Rachel Galassini, Honglei Huang, Jihoon Kim, Adriana Tremoulet, Adam Thorne, Roman Fischer, Marien I de Jonge, Taco Kuijpers, Victoria Wright, Jane C Burns, Climent Casals-Pascual, Jethro Herberg, Mike Levin, Myrsini Kaforou, On Behalf Of The Perform Consortium | International Journal Of Molecular Sciences | 2021-05-26 |
| Activatable Carbocyanine Dimers for Photoacoustic and Fluorescent Detection of Protease Activity. | Colman Moore, Raina M Borum, Yash Mantri, Ming Xu, Pavla Fajtová, Anthony J O'Donoghue, Jesse V Jokerst | ACS Sensors | 2021-05-26 |
| A phenotypically supervised single-cell analysis protocol to study within-cell-type heterogeneity of cultured mammalian cells. | Kevin Chen, Kivilcim Ozturk, Ted Liefeld, Michael Reich, Jill P Mesirov, Hannah Carter, Stephanie I Fraley | STAR Protocols | 2021-05-25 |
| Sequence determinants in the cathelicidin LL37 that promote inflammation via presentation of RNA to scavenger receptors. | Nikhil N Kulkarni, Alan M O'Neill, Tatsuya Dokoshi, Elizabeth W C Luo, Gerard C L Wong, Richard L Gallo | The Journal Of Biological Chemistry | 2021-05-25 |
| Associations of healthy food choices with gut microbiota profiles. | Kari K Koponen, Aaro Salosensaari, Matti O Ruuskanen, Aki S Havulinna, Satu Männistö, Pekka Jousilahti, Joonatan Palmu, Rodolfo Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Guillaume Meric, Susan Cheng, Michael Inouye, Mohit Jain, Teemu J Niiranen, Liisa M Valsta, Rob Knight, Veikko V Salomaa | The American Journal Of Clinical Nutrition | 2021-05-21 |
| Hypoxia-Inducible Factor 1 Alpha Is Dispensable for Host Defense of Group B Streptococcus Colonization and Infection. | Gregory R Lum, Vicki Mercado, Diede van Ens, Victor Nizet, Jacqueline M Kimmey, Kathryn A Patras | Journal Of Innate Immunity | 2021-05-21 |
| Asymmetric localization of the cell division machinery during sporulation. | Kanika Khanna, Javier Lopez Garrido, Joseph Sugie, Kit Pogliano, Elizabeth Villa | ELife | 2021-05-21 |
| SARS-CoV-2 human T cell epitopes: Adaptive immune response against COVID-19. | Alba Grifoni, John Sidney, Randi Vita, Bjoern Peters, Shane Crotty, Daniela Weiskopf, Alessandro Sette | Cell Host & Microbe | 2021-05-21 |
| Impact of Vaginal Estrogen on the Urobiome in Postmenopausal Women With Recurrent Urinary Tract Infection. | Carrie E Jung, Mehrbod Estaki, Jessica Chopyk, Bryn C Taylor, Antonio Gonzalez, Daniel McDonald, Jenny Shin, Kimberly Ferrante, Erika Wasenda, Quinn Lippmann, Rob Knight, David Pride, Emily S Lukacz | Female Pelvic Medicine & Reconstructive Surgery | 2021-05-19 |
| Cross-reactive serum and memory B-cell responses to spike protein in SARS-CoV-2 and endemic coronavirus infection. | Ge Song, Wan-Ting He, Sean Callaghan, Fabio Anzanello, Deli Huang, James Ricketts, Jonathan L Torres, Nathan Beutler, Linghang Peng, Sirena Vargas, Jon Cassell, Mara Parren, Linlin Yang, Caroline Ignacio, Davey M Smith, James E Voss, David Nemazee, Andrew B Ward, Thomas Rogers, Dennis R Burton, Raiees Andrabi | Nature Communications | 2021-05-19 |
| Are sialic acids involved in COVID-19 pathogenesis? | Chirag Dhar, Aniruddha Sasmal, Sandra Diaz, Andrea Verhagen, Hai Yu, Wanqing Li, Xi Chen, Ajit Varki | Glycobiology | 2021-05-14 |
| Challenges in benchmarking metagenomic profilers. | Zheng Sun, Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen, Anna Paola Carrieri, Yoshiki Vázquez-Baeza, Laxmi Parida, Ho-Cheol Kim, Rob Knight, Yang-Yu Liu | Nature Methods | 2021-05-13 |
| Dysregulation of Glycerophosphocholines in the Cutaneous Lesion Caused by in Experimental Murine Models. | Adwaita R Parab, Diane Thomas, Sharon Lostracco-Johnson, Jair L Siqueira-Neto, James H McKerrow, Pieter C Dorrestein, Laura-Isobel McCall | Pathogens (Basel, Switzerland) | 2021-05-13 |
| Impacts of the Marine Hatchery Built Environment, Water and Feed on Mucosal Microbiome Colonization Across Ontogeny in Yellowtail Kingfish, . | Jeremiah J Minich, Barbara Nowak, Abigail Elizur, Rob Knight, Stewart Fielder, Eric E Allen | Frontiers In Marine Science | 2021-05-13 |
| Phylogenetic analysis of the salinipostin γ-butyrolactone gene cluster uncovers new potential for bacterial signalling-molecule diversity. | Kaitlin E Creamer, Yuta Kudo, Bradley S Moore, Paul R Jensen | Microbial Genomics | 2021-05-12 |
| Taxonomic signatures of cause-specific mortality risk in human gut microbiome. | Aaro Salosensaari, Ville Laitinen, Aki S Havulinna, Guillaume Meric, Susan Cheng, Markus Perola, Liisa Valsta, Georg Alfthan, Michael Inouye, Jeramie D Watrous, Tao Long, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Mohit Jain, Pekka Jousilahti, Veikko Salomaa, Rob Knight, Leo Lahti, Teemu Niiranen | Nature Communications | 2021-05-11 |
| Intratumoral bacteria generate a new class of therapeutically relevant tumor antigens in melanoma. | Gregory D Sepich-Poore, Hannah Carter, Rob Knight | Cancer Cell | 2021-05-11 |
| 3D Visualization of Immune Cell Populations in HIV-Infected Tissues via Clearing, Immunostaining, Confocal, and Light Sheet Fluorescence Microscopy. | Tongyu Zhang, Auroni Gupta, Deborah Frederick, Laura Layman, Davey M Smith, Sara Gianella, Collin Kieffer | Journal Of Visualized Experiments : JoVE | 2021-05-06 |
| Insight into the function and evolution of the Wood-Ljungdahl pathway in Actinobacteria. | Jian-Yu Jiao, Li Fu, Zheng-Shuang Hua, Lan Liu, Nimaichand Salam, Peng-Fei Liu, Ai-Ping Lv, Geng Wu, Wen-Dong Xian, Qiyun Zhu, En-Min Zhou, Bao-Zhu Fang, Aharon Oren, Brian P Hedlund, Hong-Chen Jiang, Rob Knight, Lei Cheng, Wen-Jun Li | The ISME Journal | 2021-05-05 |
| METTL3 regulates viral m6A RNA modification and host cell innate immune responses during SARS-CoV-2 infection. | Na Li, Hui Hui, Bill Bray, Gwendolyn Michelle Gonzalez, Mark Zeller, Kristian G Anderson, Rob Knight, Davey Smith, Yinsheng Wang, Aaron F Carlin, Tariq M Rana | Cell Reports | 2021-05-03 |
| Presence of asymptomatic cytomegalovirus and Epstein--Barr virus DNA in blood of persons with HIV starting antiretroviral therapy is associated with non-AIDS clinical events. | Sara Gianella, Carlee Moser, Andrej Vitomirov, Ashley McKhann, Laura Layman, Brianna Scott, Gemma Caballero, Steven Lada, Ronald J Bosch, Martin Hoenigl, Nell Lurain, Alan Landay, Michael M Lederman, Peter W Hunt, Davey Smith | AIDS (London, England) | 2021-05-01 |
| Microbes and Geriatric Mental Health: Past, Present, and Future. | Eleonora D Vaccariello, Tanya T Nguyen | International Psychogeriatrics | 2021-04-30 |
| Gut microbiota through an evolutionary lens. | Rachel N Carmody, Amar Sarkar, Aspen T Reese | Science (New York, N.Y.) | 2021-04-30 |
| Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data. | Lingjing Jiang, Niina Haiminen, Anna-Paola Carrieri, Shi Huang, Yoshiki Vã Zquez-Baeza, Laxmi Parida, Ho-Cheol Kim, Austin D Swafford, Rob Knight, Loki Natarajan | Biometrics | 2021-04-29 |
| Unlocking capacities of viral genomics for the COVID-19 pandemic response. | Sergey Knyazev, Karishma Chhugani, Varuni Sarwal, Ram Ayyala, Harman Singh, Smruthi Karthikeyan, Dhrithi Deshpande, Zoia Comarova, Angela Lu, Yuri Porozov, Aiping Wu, Malak S Abedalthagafi, Shivashankar H Nagaraj, Adam L Smith, Pavel Skums, Jason Ladner, Tommy Tsan-Yuk Lam, Nicholas C Wu, Alex Zelikovsky, Rob Knight, Keith A Crandall, Serghei Mangul | ArXiv | 2021-04-28 |
| Infant Gut Microbiome Is Enriched with Bifidobacteria longumssp. infantisin Old Order Mennoniteswith Traditional Farming Lifestyle. | Antti E Seppo, Kevin Bu, Madina Jumabaeva, Juilee Thakar, RakinA Choudhury, Chloe Yonemitsu, Lars Bode, Camille A Martina, Maria Allen, Sabrina Tamburini, Enrica Piras, David S Wallach, R John Looney, Jose C Clemente, Kirsi M Järvinen | Allergy | 2021-04-27 |
| Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition. | Clarisse Marotz, Kellen J Cavagnero, Se Jin Song, Daniel McDonald, Stephen Wandro, Greg Humphrey, MacKenzie Bryant, Gail Ackermann, Edgar Diaz, Rob Knight | MSystems | 2021-04-27 |
| Grincamycins P-T: Rearranged Angucyclines from the Marine Sediment-Derived sp. CNZ-748 Inhibit Cell Lines of the Rare Cancer Pseudomyxoma Peritonei. | Zhuo Shang, Zachary E Ferris, Douglas Sweeney, Alexander B Chase, Chunhua Yuan, Yvonne Hui, Lukuan Hou, Ethan A Older, Dan Xue, Xiaoyu Tang, Weipeng Zhang, Prakash Nagarkatti, Mitzi Nagarkatti, Traci L Testerman, Paul R Jensen, Jie Li | Journal Of Natural Products | 2021-04-26 |
| Combined analysis of gut microbiota, diet and PNPLA3 polymorphism in biopsy-proven non-alcoholic fatty liver disease. | Sonja Lang, Anna Martin, Xinlian Zhang, Fedja Farowski, Hilmar Wisplinghoff, Maria J G T Vehreschild, Marcin Krawczyk, Angela Nowag, Anne Kretzschmar, Claus Scholz, Philipp Kasper, Christoph Roderburg, Raphael Mohr, Frank Lammert, Frank Tacke, Bernd Schnabl, Tobias Goeser, Hans-Michael Steffen, Münevver Demir | Liver International : Official Journal Of The International Association For The Study Of The Liver | 2021-04-25 |
| The purine nucleoside phosphorylase pnp-1 regulates epithelial cell resistance to infection in C. elegans. | Eillen Tecle, Crystal B Chhan, Latisha Franklin, Ryan S Underwood, Wendy Hanna-Rose, Emily R Troemel | PLoS Pathogens | 2021-04-20 |
| Adjuvanting a subunit COVID-19 vaccine to induce protective immunity. | Prabhu S Arunachalam, Alexandra C Walls, Nadia Golden, Caroline Atyeo, Stephanie Fischinger, Chunfeng Li, Pyone Aye, Mary Jane Navarro, Lilin Lai, Venkata Viswanadh Edara, Katharina Röltgen, Kenneth Rogers, Lisa Shirreff, Douglas E Ferrell, Samuel Wrenn, Deleah Pettie, John C Kraft, Marcos C Miranda, Elizabeth Kepl, Claire Sydeman, Natalie Brunette, Michael Murphy, Brooke Fiala, Lauren Carter, Alexander G White, Meera Trisal, Ching-Lin Hsieh, Kasi Russell-Lodrigue, Christopher Monjure, Jason Dufour, Skye Spencer, Lara Doyle-Meyer, Rudolph P Bohm, Nicholas J Maness, Chad Roy, Jessica A Plante, Kenneth S Plante, Alex Zhu, Matthew J Gorman, Sally Shin, Xiaoying Shen, Jane Fontenot, Shakti Gupta, Derek T O'Hagan, Robbert Van Der Most, Rino Rappuoli, Robert L Coffman, David Novack, Jason S McLellan, Shankar Subramaniam, David Montefiori, Scott D Boyd, JoAnne L Flynn, Galit Alter, Francois Villinger, Harry Kleanthous, Jay Rappaport, Mehul S Suthar, Neil P King, David Veesler, Bali Pulendran | Nature | 2021-04-19 |
| Risk factors and characteristics associated with persistent smell loss in coronavirus disease 2019 (COVID-19) patients. | Bita Shahrvini, Divya P Prajapati, Mena Said, Jacklyn Liu, Shanmukha Srinivas, Samuel Jayaraj, Valerie J Lund, Adam S DeConde, Matt Lechner, Carol H Yan | International Forum Of Allergy & Rhinology | 2021-04-17 |
| Uremic Toxins in Organ Crosstalk. | Jerome Lowenstein, Sanjay K Nigam | Frontiers In Medicine | 2021-04-16 |
| Ten scientific reasons in support of airborne transmission of SARS-CoV-2. | Trisha Greenhalgh, Jose L Jimenez, Kimberly A Prather, Zeynep Tufekci, David Fisman, Robert Schooley | Lancet (London, England) | 2021-04-15 |
| Urinary microbiota of women with recurrent urinary tract infection: collection and culture methods. | Baylie R Hochstedler, Lindsey Burnett, Travis K Price, Carrie Jung, Alan J Wolfe, Linda Brubaker | International Urogynecology Journal | 2021-04-14 |
| Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection. | Andre Mu, Daniel McDonald, Alan K Jarmusch, Cameron Martino, Caitriona Brennan, Mackenzie Bryant, Gregory C Humphrey, Julia Toronczak, Tara Schwartz, Dominic Nguyen, Gail Ackermann, Anthony D'Onofrio, Steffanie A Strathdee, Robert T Schooley, Pieter C Dorrestein, Rob Knight, Saima Aslam | Microbiome | 2021-04-14 |
| Neuropathic pain correlates with worsening cognition in people with human immunodeficiency virus. | Ronald J Ellis, Ned Sacktor, David B Clifford, Christina M Marra, Ann C Collier, Benjamin Gelman, Jessica Robinson-Papp, Scott L Letendre, Robert K Heaton, | Brain : A Journal Of Neurology | 2021-04-14 |
| Functional landscape of SARS-CoV-2 cellular restriction. | Laura Martin-Sancho, Mary K Lewinski, Lars Pache, Charlotte A Stoneham, Xin Yin, Mark E Becker, Dexter Pratt, Christopher Churas, Sara B Rosenthal, Sophie Liu, Stuart Weston, Paul D De Jesus, Alan M O'Neill, Anshu P Gounder, Courtney Nguyen, Yuan Pu, Heather M Curry, Aaron L Oom, Lisa Miorin, Ariel Rodriguez-Frandsen, Fan Zheng, Chunxiang Wu, Yong Xiong, Matthew Urbanowski, Megan L Shaw, Max W Chang, Christopher Benner, Thomas J Hope, Matthew B Frieman, Adolfo García-Sastre, Trey Ideker, Judd F Hultquist, John Guatelli, Sumit K Chanda | Molecular Cell | 2021-04-13 |
| Persistent Joint Pain Following Arthropod Virus Infections. | Karol Suchowiecki, St Patrick Reid, Gary L Simon, Gary S Firestein, Aileen Chang | Current Rheumatology Reports | 2021-04-13 |
| MrHAMER yields highly accurate single molecule viral sequences enabling analysis of intra-host evolution. | Christian M Gallardo, Shiyi Wang, Daniel J Montiel-Garcia, Susan J Little, Davey M Smith, Andrew L Routh, Bruce E Torbett | Nucleic Acids Research | 2021-04-13 |
| Structural Characterization of a Minimal Antibody against Human APOBEC3B. | Heng Tang, Özlem Demir, Fredy Kurniawan, William L Brown, Ke Shi, Nicholas H Moeller, Michael A Carpenter, Christopher Belica, Kayo Orellana, Guocheng Du, Aaron M LeBeau, Rommie E Amaro, Reuben S Harris, Hideki Aihara | Viruses | 2021-04-12 |
| Marinoterpins A-C: Rare Linear Merosesterterpenoids from Marine-Derived Actinomycete Bacteria of the Family Streptomycetaceae. | Min Cheol Kim, Jaclyn M Winter, Ratnakar N Asolkar, Chollaratt Boonlarppradab, Reiko Cullum, William Fenical | The Journal Of Organic Chemistry | 2021-04-12 |
| Genetic suppression of lethal mutations in fatty acid biosynthesis mediated by a secondary lipid synthase. | Marco N Allemann, Eric E Allen | Applied And Environmental Microbiology | 2021-04-09 |
| Influence of Intermittent Hypoxia/Hypercapnia on Atherosclerosis, Gut Microbiome, and Metabolome. | Jin Xue, Celeste Allaband, Dan Zhou, Orit Poulsen, Cameron Martino, Lingjing Jiang, Anupriya Tripathi, Emmanuel Elijah, Pieter C Dorrestein, Rob Knight, Amir Zarrinpar, Gabriel G Haddad | Frontiers In Physiology | 2021-04-08 |
| Children with Autism and Their Typically Developing Siblings Differ in Amplicon Sequence Variants and Predicted Functions of Stool-Associated Microbes. | Maude M David, Christine Tataru, Jena Daniels, Jessey Schwartz, Jessica Keating, Jarrad Hampton-Marcell, Neil Gottel, Jack A Gilbert, Dennis P Wall | MSystems | 2021-04-06 |
| Structure and dynamics of SARS-CoV-2 proofreading exoribonuclease ExoN. | Nicholas H Moeller, Ke Shi, Özlem Demir, Surajit Banerjee, Lulu Yin, Christopher Belica, Cameron Durfee, Rommie E Amaro, Hideki Aihara | BioRxiv : The Preprint Server For Biology | 2021-04-04 |
| Comparison of two nucleic acid amplification tests (NAATs) and two antigen tests for detection of SARS-CoV-2 from upper respiratory specimens. | Peiting Kuo, Susan Realegeno, David T Pride | Journal Of Clinical Virology Plus | 2021-04-03 |
| Differential T cell reactivity to endemic coronaviruses and SARS-CoV-2 in community and health care workers. | Ricardo da Silva Antunes, Suresh Pallikkuth, Erin Williams, Dawen Yu Esther, Jose Mateus, Lorenzo Quiambao, Eric Wang, Stephen A Rawlings, Daniel Stadlbauer, Kaijun Jiang, Fatima Amanat, David Arnold, David Andrews, Irma Fuego, Jennifer M Dan, Alba Grifoni, Daniela Weiskopf, Florian Krammer, Shane Crotty, Michael E Hoffer, Savita G Pahwa, Alessandro Sette | The Journal Of Infectious Diseases | 2021-04-02 |
| Targeting Biofilm of MDR by Phages Using a Catheter Model. | Chani Rakov, Shira Ben Porat, Sivan Alkalay-Oren, Ortal Yerushalmy, Mohanad Abdalrhman, Niv Gronovich, Lina Huang, David Pride, Shunit Coppenhagen-Glazer, Ran Nir-Paz, Ronen Hazan | Antibiotics (Basel, Switzerland) | 2021-04-02 |
| An Introduction to Next Generation Sequencing Bioinformatic Analysis in Gut Microbiome Studies. | Bei Gao, Liang Chi, Yixin Zhu, Xiaochun Shi, Pengcheng Tu, Bing Li, Jun Yin, Nan Gao, Weishou Shen, Bernd Schnabl | Biomolecules | 2021-04-02 |
| A Clinical-Stage Cysteine Protease Inhibitor blocks SARS-CoV-2 Infection of Human and Monkey Cells. | Drake M Mellott, Chien-Te Tseng, Aleksandra Drelich, Pavla Fajtová, Bala C Chenna, Demetrios H Kostomiris, Jason Hsu, Jiyun Zhu, Zane W Taylor, Klaudia I Kocurek, Vivian Tat, Ardala Katzfuss, Linfeng Li, Miriam A Giardini, Danielle Skinner, Ken Hirata, Michael C Yoon, Sungjun Beck, Aaron F Carlin, Alex E Clark, Laura Beretta, Daniel Maneval, Vivian Hook, Felix Frueh, Brett L Hurst, Hong Wang, Frank M Raushel, Anthony J O'Donoghue, Jair Lage de Siqueira-Neto, Thomas D Meek, James H McKerrow | ACS Chemical Biology | 2021-03-31 |
| Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States. | Nicole L Washington, Karthik Gangavarapu, Mark Zeller, Alexandre Bolze, Elizabeth T Cirulli, Kelly M Schiabor Barrett, Brendan B Larsen, Catelyn Anderson, Simon White, Tyler Cassens, Sharoni Jacobs, Geraint Levan, Jason Nguyen, Jimmy M Ramirez, Charlotte Rivera-Garcia, Efren Sandoval, Xueqing Wang, David Wong, Emily Spencer, Refugio Robles-Sikisaka, Ezra Kurzban, Laura D Hughes, Xianding Deng, Candace Wang, Venice Servellita, Holly Valentine, Peter De Hoff, Phoebe Seaver, Shashank Sathe, Kimberly Gietzen, Brad Sickler, Jay Antico, Kelly Hoon, Jingtao Liu, Aaron Harding, Omid Bakhtar, Tracy Basler, Brett Austin, Duncan MacCannell, Magnus Isaksson, Phillip G Febbo, David Becker, Marc Laurent, Eric McDonald, Gene W Yeo, Rob Knight, Louise C Laurent, Eileen de Feo, Michael Worobey, Charles Y Chiu, Marc A Suchard, James T Lu, William Lee, Kristian G Andersen | Cell | 2021-03-30 |
| Thousands of previously unknown phages discovered in whole-community human gut metagenomes. | Sean Benler, Natalya Yutin, Dmitry Antipov, Mikhail Rayko, Sergey Shmakov, Ayal B Gussow, Pavel Pevzner, Eugene V Koonin | Microbiome | 2021-03-29 |
| Outpatient Treatment of Severe Acute Respiratory Syndrome Coronavirus 2 Infection to Prevent Coronavirus Disease 2019 Progression. | Myron S Cohen, David A Wohl, William A Fischer, Davey M Smith, Joseph J Eron | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-03-28 |
| Effects of processed meat and drinking water nitrate on oral and fecal microbial populations in a controlled feeding study. | Rashmi Sinha, Ni Zhao, James J Goedert, Doratha A Byrd, Yunhu Wan, Xing Hua, Autumn G Hullings, Rob Knight, Simone van Breda, Karen Mathijs, Theo M de Kok, Mary H Ward, | Environmental Research | 2021-03-27 |
| The oncogene AAMDC links PI3K-AKT-mTOR signaling with metabolic reprograming in estrogen receptor-positive breast cancer. | Emily Golden, Rabab Rashwan, Eleanor A Woodward, Agustin Sgro, Edina Wang, Anabel Sorolla, Charlene Waryah, Wan Jun Tie, Elisabet Cuyàs, Magdalena Ratajska, Iwona Kardaś, Piotr Kozlowski, Elizabeth K M Johnstone, Heng B See, Ciara Duffy, Jeremy Parry, Kim A Lagerborg, Piotr Czapiewski, Javier A Menendez, Adam Gorczyński, Bartosz Wasag, Kevin D G Pfleger, Christina Curtis, Bum-Kyu Lee, Jonghwan Kim, Joseph Cursons, Nathan J Pavlos, Wojciech Biernat, Mohit Jain, Andrew J Woo, Andrew Redfern, Pilar Blancafort | Nature Communications | 2021-03-26 |
| The microbiome and human cancer. | Gregory D Sepich-Poore, Laurence Zitvogel, Ravid Straussman, Jeff Hasty, Jennifer A Wargo, Rob Knight | Science (New York, N.Y.) | 2021-03-26 |
| Reversible -Acetyl Migration within the Sialic Acid Side Chain and Its Influence on Protein Recognition. | Yang Ji, Aniruddha Sasmal, Wanqing Li, Lisa Oh, Saurabh Srivastava, Audra A Hargett, Brian R Wasik, Hai Yu, Sandra Diaz, Biswa Choudhury, Colin R Parrish, Darón I Freedberg, Lee-Ping Wang, Ajit Varki, Xi Chen | ACS Chemical Biology | 2021-03-26 |
| Validity of 2020 vancomycin consensus recommendations and further guidance for practical application. | Michael J Rybak, Jennifer Le, Thomas P Lodise, Donald P Levine, John S Bradley, Catherine Liu, Bruce A Mueller, Manjunath P Pai, Annie-Wong Beringer, Keith A Rodvold, Holly D Maples | American Journal Of Health-system Pharmacy : AJHP : Official Journal Of The American Society Of Health-System Pharmacists | 2021-03-26 |
| Comparison of Two Approaches for the Metataxonomic Analysis of the Human Milk Microbiome. | Lorena Ruiz, Claudio Alba, Cristina García-Carral, Esther A Jiménez, Kimberly A Lackey, Michelle K McGuire, Courtney L Meehan, James Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, Debela Gindola K, Gloria E Otoo, Rossina G Pareja, Lars Bode, Mark A McGuire, Janet E Williams, Juan M Rodríguez | Frontiers In Cellular And Infection Microbiology | 2021-03-25 |
| Association of Loneliness and Wisdom With Gut Microbial Diversity and Composition: An Exploratory Study. | Tanya T Nguyen, Xinlian Zhang, Tsung-Chin Wu, Jinyuan Liu, Collin Le, Xin M Tu, Rob Knight, Dilip V Jeste | Frontiers In Psychiatry | 2021-03-25 |
| Tandem Fluorescence Measurements of Organic Matter and Bacteria Released in Sea Spray Aerosols. | Mitchell V Santander, Brock A Mitts, Matthew A Pendergraft, Julie Dinasquet, Christopher Lee, Alexia N Moore, Lucia B Cancelada, Ke'La A Kimble, Francesca Malfatti, Kimberly A Prather | Environmental Science & Technology | 2021-03-23 |
| Renal and non-renal response of ABC and SLC transporters in chronic kidney disease. | Adriana M Torres, Ankur V Dnyanmote, Jeffry C Granados, Sanjay K Nigam | Expert Opinion On Drug Metabolism & Toxicology | 2021-03-22 |
| Coordinate regulation of systemic and kidney tryptophan metabolism by the drug transporters OAT1 and OAT3. | Jeffry C Granados, Anne Richelle, Jahir M Gutierrez, Patrick Zhang, Xinlian Zhang, Vibha Bhatnagar, Nathan E Lewis, Sanjay K Nigam | The Journal Of Biological Chemistry | 2021-03-21 |
| Driving to Safety: CRISPR-Based Genetic Approaches to Reducing Antibiotic Resistance. | Ethan Bier, Victor Nizet | Trends In Genetics : TIG | 2021-03-18 |
| Author Correction: Gut microbiome pattern reflects healthy ageing and predicts survival in humans. | Tomasz Wilmanski, Christian Diener, Noa Rappaport, Sushmita Patwardhan, Jack Wiedrick, Jodi Lapidus, John C Earls, Anat Zimmer, Gustavo Glusman, Max Robinson, James T Yurkovich, Deborah M Kado, Jane A Cauley, Joseph Zmuda, Nancy E Lane, Andrew T Magis, Jennifer C Lovejoy, Leroy Hood, Sean M Gibbons, Eric S Orwoll, Nathan D Price | Nature Metabolism | 2021-03-18 |
| Current Paradigms of Combination Therapy in Methicillin-Resistant Staphylococcus aureus (MRSA) Bacteremia: Does it Work, Which Combination, and For Which Patients? | Warren Rose, Michael Fantl, Matthew Geriak, Victor Nizet, George Sakoulas | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-03-16 |
| EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets. | Kalen Cantrell, Marcus W Fedarko, Gibraan Rahman, Daniel McDonald, Yimeng Yang, Thant Zaw, Antonio Gonzalez, Stefan Janssen, Mehrbod Estaki, Niina Haiminen, Kristen L Beck, Qiyun Zhu, Erfan Sayyari, James T Morton, George Armstrong, Anupriya Tripathi, Julia M Gauglitz, Clarisse Marotz, Nathaniel L Matteson, Cameron Martino, Jon G Sanders, Anna Paola Carrieri, Se Jin Song, Austin D Swafford, Pieter C Dorrestein, Kristian G Andersen, Laxmi Parida, Ho-Cheol Kim, Yoshiki Vázquez-Baeza, Rob Knight | MSystems | 2021-03-16 |
| A Cyanobacterial Component Required for Pilus Biogenesis Affects the Exoproteome. | Yevgeni Yegorov, Eleonora Sendersky, Shaul Zilberman, Elad Nagar, Hiba Waldman Ben-Asher, Eyal Shimoni, Ryan Simkovsky, Susan S Golden, Andy LiWang, Rakefet Schwarz | MBio | 2021-03-16 |
| SARS-CoV-2 Screening Among Symptom-Free Healthcare Workers. | Ryan T Demmer, Angela K Ulrich, Talia D Wiggen, Ali Strickland, Brianna M Naumchik, Shalini Kulasingam, Steven D Stovitz, Clarisse Marotz, Pedro Belda-Ferre, Greg Humphrey, Peter De Hoff, Louise Laurent, Susan Kline, Rob Knight | Infection Control And Hospital Epidemiology | 2021-03-12 |
| An 11-Year-old Male With X-linked Agammaglobulinemia and Persistent Abdominal Pain. | Natalie B Fettinger, John S Bradley, Nanda Ramchandar | The Pediatric Infectious Disease Journal | 2021-03-12 |
| Pharmacokinetics and Safety of Single-dose Tedizolid Phosphate in Children 2 to <12 Years of Age. | Antonio C Arrieta, Jocelyn Y Ang, Claudia Espinosa, Oleksandr Fofanov, Camilla Tøndel, Margaret Z Chou, Carisa S De Anda, Jason Y Kim, Dan Li, Philip Sabato, Pamela S Sears, John S Bradley | The Pediatric Infectious Disease Journal | 2021-03-12 |
| COVID-19 and older adults with bipolar disorder: Problems and solutions. | Osvaldo P Almeida, Esther Jimenez, Soham Rej, Lisa Eyler, Martha Sajatovic, Annemiek Dols | Bipolar Disorders | 2021-03-12 |
| Derlin rhomboid pseudoproteases employ substrate engagement and lipid distortion to enable the retrotranslocation of ERAD membrane substrates. | Anahita Nejatfard, Nicholas Wauer, Satarupa Bhaduri, Adam Conn, Saroj Gourkanti, Narinderbir Singh, Tiffany Kuo, Rachel Kandel, Rommie E Amaro, Sonya E Neal | Cell Reports | 2021-03-12 |
| Cardiac Rehab in the COVID Era and Beyond: mHealth and Other Novel Opportunities. | Elizabeth Epstein, Neeja Patel, Kathryn Maysent, Pam R Taub | Current Cardiology Reports | 2021-03-11 |
| Dietary factors, gut microbiota, and serum trimethylamine-N-oxide associated with cardiovascular disease in the Hispanic Community Health Study/Study of Latinos. | Zhendong Mei, Guo-Chong Chen, Zheng Wang, Mykhaylo Usyk, Bing Yu, Yoshiki Vazquez Baeza, Greg Humphrey, Rodolfo Salido Benitez, Jun Li, Jessica S Williams-Nguyen, Martha L Daviglus, Lifang Hou, Jianwen Cai, Yan Zheng, Rob Knight, Robert D Burk, Eric Boerwinkle, Robert C Kaplan, Qibin Qi | The American Journal Of Clinical Nutrition | 2021-03-11 |
| Conjugation to Enterobactin and Salmochelin S4 Enhances the Antimicrobial Activity and Selectivity of β-Lactam Antibiotics against Nontyphoidal . | Artur Sargun, Martina Sassone-Corsi, Tengfei Zheng, Manuela Raffatellu, Elizabeth M Nolan | ACS Infectious Diseases | 2021-03-10 |
| Time to Viral Rebound After Interruption of Modern Antiretroviral Therapies. | Jonathan Z Li, Evgenia Aga, Ronald J Bosch, Mark Pilkinton, Eugène Kroon, Lynsay MacLaren, Michael Keefer, Lawrence Fox, Liz Barr, Edward Acosta, Jintanat Ananworanich, Robert Coombs, John W Mellors, Alan L Landay, Bernard Macatangay, Steven Deeks, Rajesh T Gandhi, Davey M Smith | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-03-09 |
| Exploring the Composition and Functions of Plastic Microbiome Using Whole-Genome Sequencing. | Geetika Bhagwat, Qiyun Zhu, Wayne O'Connor, Suresh Subashchandrabose, Ian Grainge, Rob Knight, Thava Palanisami | Environmental Science & Technology | 2021-03-09 |
| Staphylococcus aureus Enters Hair Follicles Using Triacylglycerol Lipases Preserved through the Genus Staphylococcus. | Kouki Nakamura, Michael R Williams, Jakub M Kwiecinski, Alexander R Horswill, Richard L Gallo | The Journal Of Investigative Dermatology | 2021-03-09 |
| Increased Peripheral Blood Neutrophil Activation Phenotypes and Neutrophil Extracellular Trap Formation in Critically Ill Coronavirus Disease 2019 (COVID-19) Patients: A Case Series and Review of the Literature. | Jorge A Masso-Silva, Alexander Moshensky, Michael T Y Lam, Mazen F Odish, Arjun Patel, Le Xu, Emily Hansen, Samantha Trescott, Celina Nguyen, Roy Kim, Katherine Perofsky, Samantha Perera, Lauren Ma, Josephine Pham, Mark Rolfsen, Jarod Olay, John Shin, Jennifer M Dan, Robert K Abbott, Sydney Ramirez, Thomas H Alexander, Grace Y Lin, Ana Lucia Fuentes, Ira Advani, Deepti Gunge, Victor Pretorius, Atul Malhotra, Xin Sun, Jason Duran, Mark Hepokoski, Shane Crotty, Nicole G Coufal, Angela Meier, Laura E Crotty Alexander | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-03-05 |
| Disease-related mutations in PI3Kγ disrupt regulatory C-terminal dynamics and reveal a path to selective inhibitors. | Manoj K Rathinaswamy, Zied Gaieb, Kaelin D Fleming, Chiara Borsari, Noah J Harris, Brandon E Moeller, Matthias P Wymann, Rommie E Amaro, John E Burke | ELife | 2021-03-04 |
| Proton pump inhibitor use status does not modify the microbiome signature for cirrhosis. | Tae Gyu Oh, Susy M Kim, Annette R Atkins, Ruth T Yu, Michael Downes, Ronald M Evans, Rohit Loomba | Cell Metabolism | 2021-03-03 |
| High-Throughput Wastewater SARS-CoV-2 Detection Enables Forecasting of Community Infection Dynamics in San Diego County. | Smruthi Karthikeyan, Nancy Ronquillo, Pedro Belda-Ferre, Destiny Alvarado, Tara Javidi, Christopher A Longhurst, Rob Knight | MSystems | 2021-03-02 |
| Links between gut microbiome composition and fatty liver disease in a large population sample. | Matti O Ruuskanen, Fredrik Åberg, Ville Männistö, Aki S Havulinna, Guillaume Méric, Yang Liu, Rohit Loomba, Yoshiki Vázquez-Baeza, Anupriya Tripathi, Liisa M Valsta, Michael Inouye, Pekka Jousilahti, Veikko Salomaa, Mohit Jain, Rob Knight, Leo Lahti, Teemu J Niiranen | Gut Microbes | 2021-03-02 |
| Gut microbiota dysbiosis is associated with worse emotional states in HIV infection. | Josué Pérez-Santiago, María J Marquine, Debralee Cookson, Rafael Giraud-Colón, Robert K Heaton, Igor Grant, Ronald J Ellis, Scott L Letendre, Scott N Peterson | Journal Of Neurovirology | 2021-03-02 |
| Bcl6-Mediated Transcriptional Regulation of Follicular Helper T cells (T). | Jinyong Choi, Shane Crotty | Trends In Immunology | 2021-03-01 |
| Highly mutated antibodies capable of neutralizing N276 glycan-deficient HIV after a single immunization with an Env trimer. | Jeong Hyun Lee, Catherine Nakao, Michael Appel, Amber Le, Elise Landais, Oleksandr Kalyuzhniy, Xiaozhen Hu, Alessia Liguori, Tina-Marie Mullen, Bettina Groschel, Robert K Abbott, Devin Sok, William R Schief, Shane Crotty | Cell Reports | 2021-02-28 |
| Spatial variability of prokaryotic and viral abundances in the Kermadec and Atacama Trench regions. | Clemens Schauberger, Mathias Middelboe, Morten Larsen, Logan M Peoples, Douglas H Bartlett, Finn Kirpekar, Ashley A Rowden, Frank Wenzhöfer, Bo Thamdrup, Ronnie N Glud | Limnology And Oceanography | 2021-02-28 |
| Dissociation of DNA damage sensing by endoglycosidase HPSE. | Alex Agelidis, Rahul K Suryawanshi, Chandrashekhar D Patil, Anaamika Campeau, David J Gonzalez, Deepak Shukla | IScience | 2021-02-27 |
| Hitting the diagnostic sweet spot: Point-of-care SARS-CoV-2 salivary antigen testing with an off-the-shelf glucometer. | Naveen K Singh, Partha Ray, Aaron F Carlin, Celestine Magallanes, Sydney C Morgan, Louise C Laurent, Eliah S Aronoff-Spencer, Drew A Hall | Biosensors & Bioelectronics | 2021-02-26 |
| Associations of fecal microbial profiles with breast cancer and nonmalignant breast disease in the Ghana Breast Health Study. | Doratha A Byrd, Emily Vogtmann, Zeni Wu, Yongli Han, Yunhu Wan, Joe-Nat Clegg-Lamptey, Joel Yarney, Beatrice Wiafe-Addai, Seth Wiafe, Baffour Awuah, Daniel Ansong, Kofi Nyarko, Autumn G Hullings, Xing Hua, Thomas Ahearn, James J Goedert, Jianxin Shi, Rob Knight, Jonine D Figueroa, Louise A Brinton, Montserrat Garcia-Closas, Rashmi Sinha | International Journal Of Cancer | 2021-02-26 |
| Identification of an N-acetylneuraminic acid-presenting bacteria isolated from a human microbiome. | Zhen Han, Peter S Thuy-Boun, Wayne Pfeiffer, Vincent F Vartabedian, Ali Torkamani, John R Teijaro, Dennis W Wolan | Scientific Reports | 2021-02-26 |
| The Molecular Basis for Life in Extreme Environments. | Nozomi Ando, Blanca Barquera, Douglas H Bartlett, Eric Boyd, Audrey A Burnim, Amanda S Byer, Daniel Colman, Richard E Gillilan, Martin Gruebele, George Makhatadze, Catherine A Royer, Everett Shock, A Joshua Wand, Maxwell B Watkins | Annual Review Of Biophysics | 2021-02-26 |
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| Searching for host immune-microbiome mechanisms in obsessive-compulsive disorder: A narrative literature review and future directions. | Emily A Troyer, Jordan N Kohn, Gertrude Ecklu-Mensah, Gajender Aleti, David R Rosenberg, Suzi Hong | Neuroscience And Biobehavioral Reviews | 2021-02-24 |
| The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection. | Fatemeh Askarian, Satoshi Uchiyama, Helen Masson, Henrik Vinther Sørensen, Ole Golten, Anne Cathrine Bunæs, Sophanit Mekasha, Åsmund Kjendseth Røhr, Eirik Kommedal, Judith Anita Ludviksen, Magnus Ø Arntzen, Benjamin Schmidt, Raymond H Zurich, Nina M van Sorge, Vincent G H Eijsink, Ute Krengel, Tom Eirik Mollnes, Nathan E Lewis, Victor Nizet, Gustav Vaaje-Kolstad | Nature Communications | 2021-02-23 |
| Intestinal α1-2-Fucosylation Contributes to Obesity and Steatohepatitis in Mice. | Rongrong Zhou, Cristina Llorente, Jinling Cao, Livia S Zaramela, Suling Zeng, Bei Gao, Shang-Zhen Li, Ryan D Welch, Feng-Qing Huang, Lian-Wen Qi, Chuyue Pan, Yan Huang, Pengchen Zhou, Iris Beussen, Ying Zhang, Gregory Bryam, Oliver Fiehn, Lirui Wang, E-Hu Liu, Ruth T Yu, Michael Downes, Ronald M Evans, Karrie Goglin, Derrick E Fouts, David A Brenner, Lars Bode, Xuegong Fan, Karsten Zengler, Bernd Schnabl | Cellular And Molecular Gastroenterology And Hepatology | 2021-02-22 |
| Development of a human skin commensal microbe for bacteriotherapy of atopic dermatitis and use in a phase 1 randomized clinical trial. | Teruaki Nakatsuji, Tissa R Hata, Yun Tong, Joyce Y Cheng, Faiza Shafiq, Anna M Butcher, Secilia S Salem, Samantha L Brinton, Amanda K Rudman Spergel, Keli Johnson, Brett Jepson, Agustin Calatroni, Gloria David, Marco Ramirez-Gama, Patricia Taylor, Donald Y M Leung, Richard L Gallo | Nature Medicine | 2021-02-22 |
| RAMIC: Design of a randomized, double-blind, placebo-controlled trial to evaluate the efficacy of ramipril in patients with COVID-19. | Veeral Ajmera, Wesley K Thompson, Davey M Smith, Atul Malhotra, Ravindra L Mehta, Vaishal Tolia, Jeffrey Yin, Krishna Sriram, Paul A Insel, Summer Collier, Lisa Richards, Rohit Loomba | Contemporary Clinical Trials | 2021-02-22 |
| Carbohydrates great and small, from dietary fiber to sialic acids: How glycans influence the gut microbiome and affect human health. | Joanna K Coker, Oriane Moyne, Dmitry A Rodionov, Karsten Zengler | Gut Microbes | 2021-02-22 |
| Antimicrobial prescribing for treatment of serious infections caused by Staphylococcus aureus and methicillin-resistant Staphylococcus aureus in pediatrics: an expert review. | Sean N Avedissian, Nathanial J Rhodes, Christopher L Shaffer, Lan Tran, John S Bradley, Jennifer Le | Expert Review Of Anti-infective Therapy | 2021-02-21 |
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| Chemical interplay and complementary adaptative strategies toggle bacterial antagonism and co-existence. | Carlos Molina-Santiago, David Vela-Corcía, Daniel Petras, Luis Díaz-Martínez, Alicia Isabel Pérez-Lorente, Sara Sopeña-Torres, John Pearson, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein, Antonio de Vicente, Diego Romero | Cell Reports | 2021-02-18 |
| Gut microbiome pattern reflects healthy ageing and predicts survival in humans. | Tomasz Wilmanski, Christian Diener, Noa Rappaport, Sushmita Patwardhan, Jack Wiedrick, Jodi Lapidus, John C Earls, Anat Zimmer, Gustavo Glusman, Max Robinson, James T Yurkovich, Deborah M Kado, Jane A Cauley, Joseph Zmuda, Nancy E Lane, Andrew T Magis, Jennifer C Lovejoy, Leroy Hood, Sean M Gibbons, Eric S Orwoll, Nathan D Price | Nature Metabolism | 2021-02-18 |
| A community resource for paired genomic and metabolomic data mining. | Michelle A Schorn, Stefan Verhoeven, Lars Ridder, Florian Huber, Deepa D Acharya, Alexander A Aksenov, Gajender Aleti, Jamshid Amiri Moghaddam, Allegra T Aron, Saefuddin Aziz, Anelize Bauermeister, Katherine D Bauman, Martin Baunach, Christine Beemelmanns, J Michael Beman, María Victoria Berlanga-Clavero, Alex A Blacutt, Helge B Bode, Anne Boullie, Asker Brejnrod, Tim S Bugni, Alexandra Calteau, Liu Cao, Víctor J Carrión, Raquel Castelo-Branco, Shaurya Chanana, Alexander B Chase, Marc G Chevrette, Leticia V Costa-Lotufo, Jason M Crawford, Cameron R Currie, Bart Cuypers, Tam Dang, Tristan de Rond, Alyssa M Demko, Elke Dittmann, Chao Du, Christopher Drozd, Jean-Claude Dujardin, Rachel J Dutton, Anna Edlund, David P Fewer, Neha Garg, Julia M Gauglitz, Emily C Gentry, Lena Gerwick, Evgenia Glukhov, Harald Gross, Muriel Gugger, Dulce G Guillén Matus, Eric J N Helfrich, Benjamin-Florian Hempel, Jae-Seoun Hur, Marianna Iorio, Paul R Jensen, Kyo Bin Kang, Leonard Kaysser, Neil L Kelleher, Chung Sub Kim, Ki Hyun Kim, Irina Koester, Gabriele M König, Tiago Leao, Seoung Rak Lee, Yi-Yuan Lee, Xuanji Li, Jessica C Little, Katherine N Maloney, Daniel Männle, Christian Martin H, Andrew C McAvoy, Willam W Metcalf, Hosein Mohimani, Carlos Molina-Santiago, Bradley S Moore, Michael W Mullowney, Mitchell Muskat, Louis-Félix Nothias, Ellis C O'Neill, Elizabeth I Parkinson, Daniel Petras, Jörn Piel, Emily C Pierce, Karine Pires, Raphael Reher, Diego Romero, M Caroline Roper, Michael Rust, Hamada Saad, Carmen Saenz, Laura M Sanchez, Søren Johannes Sørensen, Margherita Sosio, Roderich D Süssmuth, Douglas Sweeney, Kapil Tahlan, Regan J Thomson, Nicholas J Tobias, Amaro E Trindade-Silva, Gilles P van Wezel, Mingxun Wang, Kelly C Weldon, Fan Zhang, Nadine Ziemert, Katherine R Duncan, Max Crüsemann, Simon Rogers, Pieter C Dorrestein, Marnix H Medema, Justin J J van der Hooft | Nature Chemical Biology | 2021-02-17 |
| Quantifying Live Microbial Load in Human Saliva Samples over Time Reveals Stable Composition and Dynamic Load. | Clarisse Marotz, James T Morton, Perris Navarro, Joanna Coker, Pedro Belda-Ferre, Rob Knight, Karsten Zengler | MSystems | 2021-02-16 |
| Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus. | St Elmo Wilken, Jonathan M Monk, Patrick A Leggieri, Christopher E Lawson, Thomas S Lankiewicz, Susanna Seppälä, Chris G Daum, Jerry Jenkins, Anna M Lipzen, Stephen J Mondo, Kerrie W Barry, Igor V Grigoriev, John K Henske, Michael K Theodorou, Bernhard O Palsson, Linda R Petzold, Michelle A O'Malley | MSystems | 2021-02-16 |
| Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features. | Natalya Yutin, Sean Benler, Sergei A Shmakov, Yuri I Wolf, Igor Tolstoy, Mike Rayko, Dmitry Antipov, Pavel A Pevzner, Eugene V Koonin | Nature Communications | 2021-02-16 |
| Tiny Earth: A Big Idea for STEM Education and Antibiotic Discovery. | Amanda Hurley, Marc G Chevrette, Deepa D Acharya, Gabriel L Lozano, Manuel Garavito, Jen Heinritz, Luis Balderrama, Mara Beebe, Martel L DenHartog, Kamiyah Corinaldi, Renee Engels, Alyssa Gutierrez, Orli Jona, Josephine H I Putnam, Brody Rhodes, Tiffany Tsang, Simon Hernandez, Carol Bascom-Slack, Jessamina E Blum, Paul A Price, Debra Davis, Joanna Klein, Joshua Pultorak, Nora L Sullivan, Nigel J Mouncey, Pieter C Dorrestein, Sarah Miller, Nichole A Broderick, Jo Handelsman | MBio | 2021-02-16 |
| Fungi-Bacteria Correlation in Alcoholic Hepatitis Patients. | Bei Gao, Xinlian Zhang, Bernd Schnabl | Toxins | 2021-02-14 |
| Seroprevalence of antibodies to SARS-CoV-2 in healthcare workers: a cross-sectional study. | Joseph E Ebinger, Gregory J Botwin, Christine M Albert, Mona Alotaibi, Moshe Arditi, Anders H Berg, Aleksandra Binek, Patrick Botting, Justyna Fert-Bober, Jane C Figueiredo, Jonathan D Grein, Wohaib Hasan, Mir Henglin, Shehnaz K Hussain, Mohit Jain, Sandy Joung, Michael Karin, Elizabeth H Kim, Dalin Li, Yunxian Liu, Eric Luong, Dermot P B McGovern, Akil Merchant, Noah Merin, Peggy B Miles, Margo Minissian, Trevor Trung Nguyen, Koen Raedschelders, Mohamad A Rashid, Celine E Riera, Richard V Riggs, Sonia Sharma, Sarah Sternbach, Nancy Sun, Warren G Tourtellotte, Jennifer E Van Eyk, Kimia Sobhani, Jonathan G Braun, Susan Cheng | BMJ Open | 2021-02-12 |
| Revealing Tissue-Specific SARS-CoV-2 Infection and Host Responses using Human Stem Cell-Derived Lung and Cerebral Organoids. | Shashi Kant Tiwari, Shaobo Wang, Davey Smith, Aaron F Carlin, Tariq M Rana | Stem Cell Reports | 2021-02-12 |
| Multipathogen Analysis of IgA and IgG Antigen Specificity for Selected Pathogens in Milk Produced by Women From Diverse Geographical Regions: The INSPIRE Study. | Michelle K McGuire, Arlo Z Randall, Antti E Seppo, Kirsi M Järvinen, Courtney L Meehan, Debela Gindola, Janet E Williams, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, James A Foster, Gloria E Otoo, Juan M Rodríguez, Rossina G Pareja, Lars Bode, Mark A McGuire, Joseph J Campo | Frontiers In Immunology | 2021-02-11 |
| Paresthesia Predicts Increased Risk of Distal Neuropathic Pain in Older People with HIV-Associated Sensory Polyneuropathy. | Monica M Diaz, John R Keltner, Alan N Simmons, Donald Franklin, Raeanne C Moore, David Clifford, Ann C Collier, Benjamin B Gelman, Ph D Christina Marra, J Allen McCutchan, Susan Morgello, Ned Sacktor, Brookie Best, Christine Fennema Notestine, Sara Gianella Weibel, Igor Grant, Thomas D Marcotte, Florin Vaida, Scott Letendre, Robert Heaton, Ronald J Ellis | Pain Medicine (Malden, Mass.) | 2021-02-11 |
| Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly. | Mahul Chakraborty, Arunachalam Ramaiah, Adriana Adolfi, Paige Halas, Bhagyashree Kaduskar, Luna Thanh Ngo, Suvratha Jayaprasad, Kiran Paul, Saurabh Whadgar, Subhashini Srinivasan, Suresh Subramani, Ethan Bier, Anthony A James, J J Emerson | BMC Biology | 2021-02-10 |
| Higher Comorbidity Burden Predicts Worsening Neurocognitive Trajectories in People with Human Immunodeficiency Virus. | Ronald J Ellis, Emily Paolillo, Rowan Saloner, Robert K Heaton | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-02-10 |
| IonoBiology: The functional dynamics of the intracellular metallome, with lessons from bacteria. | Leticia Galera-Laporta, Colin J Comerci, Jordi Garcia-Ojalvo, Gürol M Süel | Cell Systems | 2021-02-10 |
| Human Milk-Fed Piglets Have a Distinct Small Intestine and Circulatory Metabolome Profile Relative to That of Milk Formula-Fed Piglets. | Fernanda Rosa, Katelin S Matazel, Ahmed A Elolimy, Sean H Adams, Anne Bowlin, Keith D Williams, Lars Bode, Laxmi Yeruva | MSystems | 2021-02-09 |
| Functional Restoration of Bacteriomes and Viromes by Fecal Microbiota Transplantation. | Kosuke Fujimoto, Yasumasa Kimura, Jessica R Allegretti, Mako Yamamoto, Yao-Zhong Zhang, Kotoe Katayama, Georg Tremmel, Yunosuke Kawaguchi, Masaki Shimohigoshi, Tetsuya Hayashi, Miho Uematsu, Kiyoshi Yamaguchi, Yoichi Furukawa, Yutaka Akiyama, Rui Yamaguchi, Sheila E Crowe, Peter B Ernst, Satoru Miyano, Hiroshi Kiyono, Seiya Imoto, Satoshi Uematsu | Gastroenterology | 2021-02-09 |
| Emergence of an early SARS-CoV-2 epidemic in the United States. | Mark Zeller, Karthik Gangavarapu, Catelyn Anderson, Allison R Smither, John A Vanchiere, Rebecca Rose, Daniel J Snyder, Gytis Dudas, Alexander Watts, Nathaniel L Matteson, Refugio Robles-Sikisaka, Maximilian Marshall, Amy K Feehan, Gilberto Sabino-Santos, Antoinette R Bell-Kareem, Laura D Hughes, Manar Alkuzweny, Patricia Snarski, Julia Garcia-Diaz, Rona S Scott, Lilia I Melnik, Raphaälle Klitting, Michelle McGraw, Pedro Belda-Ferre, Peter DeHoff, Shashank Sathe, Clarisse Marotz, Nathan Grubaugh, David J Nolan, Arnaud C Drouin, Kaylynn J Genemaras, Karissa Chao, Sarah Topol, Emily Spencer, Laura Nicholson, Stefan Aigner, Gene W Yeo, Lauge Farnaes, Charlotte A Hobbs, Louise C Laurent, Rob Knight, Emma B Hodcroft, Kamran Khan, Dahlene N Fusco, Vaughn S Cooper, Phillipe Lemey, Lauren Gardner, Susanna L Lamers, Jeremy P Kamil, Robert F Garry, Marc A Suchard, Kristian G Andersen | MedRxiv : The Preprint Server For Health Sciences | 2021-02-08 |
| Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States. | Nicole L Washington, Karthik Gangavarapu, Mark Zeller, Alexandre Bolze, Elizabeth T Cirulli, Kelly M Schiabor Barrett, Brendan B Larsen, Catelyn Anderson, Simon White, Tyler Cassens, Sharoni Jacobs, Geraint Levan, Jason Nguyen, Jimmy M Ramirez, Charlotte Rivera-Garcia, Efren Sandoval, Xueqing Wang, David Wong, Emily Spencer, Refugio Robles-Sikisaka, Ezra Kurzban, Laura D Hughes, Xianding Deng, Candace Wang, Venice Servellita, Holly Valentine, Peter De Hoff, Phoebe Seaver, Shashank Sathe, Kimberly Gietzen, Brad Sickler, Jay Antico, Kelly Hoon, Jingtao Liu, Aaron Harding, Omid Bakhtar, Tracy Basler, Brett Austin, Magnus Isaksson, Phillip G Febbo, David Becker, Marc Laurent, Eric McDonald, Gene W Yeo, Rob Knight, Louise C Laurent, Eileen de Feo, Michael Worobey, Charles Chiu, Marc A Suchard, James T Lu, William Lee, Kristian G Andersen | MedRxiv : The Preprint Server For Health Sciences | 2021-02-07 |
| Whole genome sequencing identifies novel genetic mutations in patients with eczema herpeticum. | Lianghua Bin, Claire Malley, Patricia Taylor, Meher Preethi Boorgula, Sameer Chavan, Michelle Daya, Malaika Mathias, Gautam Shankar, Nicholas Rafaels, Candelaria Vergara, Joseph Potee, Monica Campbell, Jon M Hanifin, Eric Simpson, Lynda C Schneider, Richard L Gallo, Tissa Hata, Amy S Paller, Anna De Benedetto, Lisa A Beck, Peck Y Ong, Emma Guttman-Yassky, Brittany Richers, David Baraghoshi, Ingo Ruczinski, Kathleen C Barnes, Donald Y M Leung, Rasika A Mathias | Allergy | 2021-02-06 |
| The sum is greater than the parts: exploiting microbial communities to achieve complex functions. | Livia S Zaramela, Oriane Moyne, Manish Kumar, Cristal Zuniga, Juan D Tibocha-Bonilla, Karsten Zengler | Current Opinion In Biotechnology | 2021-02-06 |
| Change in Fibrosis 4 Index as Predictor of High Risk of Incident Hepatocellular Carcinoma After Eradication of Hepatitis C Virus. | Nobuharu Tamaki, Masayuki Kurosaki, Yutaka Yasui, Nami Mori, Keiji Tsuji, Chitomi Hasebe, Koji Joko, Takehiro Akahane, Koichiro Furuta, Haruhiko Kobashi, Hiroyuki Kimura, Hitoshi Yagisawa, Hiroyuki Marusawa, Masahiko Kondo, Yuji Kojima, Hideo Yoshida, Yasushi Uchida, Rohit Loomba, Namiki Izumi | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-02-05 |
| Building biorepositories in the midst of a pandemic. | Jennifer A Croker, Robin Patel, Kenneth S Campbell, Marietta Barton-Baxter, Shannon Wallet, Gary S Firestein, Robert P Kimberly, Olivier Elemento | Journal Of Clinical And Translational Science | 2021-02-05 |
| Breastfeed or be vaccinated-an unreasonable default recommendation. | Anne Merewood, Lars Bode, Riccardo Davanzo, Rafael Perez-Escamilla | Lancet (London, England) | 2021-02-04 |
| Current state of athalassohaline deep-sea hypersaline anoxic basin research-recommendations for future work and relevance to astrobiology. | Luke A Fisher, Alexandra Pontefract, Sanjoy M Som, Christopher E Carr, Benjamin Klempay, Britney E Schmidt, Jeff S Bowman, Douglas H Bartlett | Environmental Microbiology | 2021-02-04 |
| Moving Beyond the Momentum: Innovative Approaches to Clinical Trial Implementation. | Cathy Eng, Emerson Y Chen, Jane Rogers, Mark Lewis, Jonathan Strosberg, Ramya Thota, Smitha Krishnamurthi, Paul Oberstein, Rang Govindarajan, Gary Buchschacher, Sandip Patel, Davendra Sohal, Taymeyah Al-Toubah, Philip Philip, Arvind Dasari, Hagan Kennecke, Stacey Stein | JCO Oncology Practice | 2021-02-03 |
| Promoting and Protecting Human Milk and Breastfeeding in a COVID-19 World. | Diane L Spatz, Riccardo Davanzo, Janis A Müller, Rebecca Powell, Virginie Rigourd, Ann Yates, Donna T Geddes, Johannes B van Goudoever, Lars Bode | Frontiers In Pediatrics | 2021-02-03 |
| Decade-scale stability and change in a marine bivalve microbiome. | Alexander T Neu, Ian V Hughes, Eric E Allen, Kaustuv Roy | Molecular Ecology | 2021-02-02 |
| Apurinic/Apyrimidinic Endonuclease 1 Restricts the Internalization of Bacteria Into Human Intestinal Epithelial Cells Through the Inhibition of Rac1. | Gerco den Hartog, Lindsay D Butcher, Amber L Ablack, Laura A Pace, Jailal N G Ablack, Richard Xiong, Soumita Das, Thaddeus S Stappenbeck, Lars Eckmann, Peter B Ernst, Sheila E Crowe | Frontiers In Immunology | 2021-02-02 |
| Independent component analysis recovers consistent regulatory signals from disparate datasets. | Anand V Sastry, Alyssa Hu, David Heckmann, Saugat Poudel, Erol Kavvas, Bernhard O Palsson | PLoS Computational Biology | 2021-02-02 |
| Microbiota control of maternal behavior regulates early postnatal growth of offspring. | Yujung Michelle Lee, Andre Mu, Martina Wallace, Jivani M Gengatharan, Annalee J Furst, Lars Bode, Christian M Metallo, Janelle S Ayres | Science Advances | 2021-01-29 |
| A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities. | Justin P Shaffer, Clarisse Marotz, Pedro Belda-Ferre, Cameron Martino, Stephen Wandro, Mehrbod Estaki, Rodolfo A Salido, Carolina S Carpenter, Livia S Zaramela, Jeremiah J Minich, MacKenzie Bryant, Karenina Sanders, Serena Fraraccio, Gail Ackermann, Gregory Humphrey, Austin D Swafford, Sandrine Miller-Montgomery, Rob Knight | BioTechniques | 2021-01-29 |
| Identifying COVID-19 Cases and Social Groups at High Risk of Transmission: A Strategy to Reduce Community Spread. | Robert A Gunn, John Bellettiere, Richard S Garfein, Kanya C Long, Nancy J Binkin, Cheryl A M Anderson | Public Health Reports (Washington, D.C. : 1974) | 2021-01-28 |
| First report on prevalence of SARS-CoV-2 infection among health-care workers in Nicaragua. | Jorge A Huete-Pérez, Cristiana Cabezas-Robelo, Lucía Páiz-Medina, Carlos A Hernández-Álvarez, Carlos Quant-Durán, James H McKerrow | PloS One | 2021-01-27 |
| More than a Pore: Nonlytic Antimicrobial Functions of Complement and Bacterial Strategies for Evasion. | Elisabet Bjanes, Victor Nizet | Microbiology And Molecular Biology Reviews : MMBR | 2021-01-27 |
| Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases. | Alison Tarke, John Sidney, Conner K Kidd, Jennifer M Dan, Sydney I Ramirez, Esther Dawen Yu, Jose Mateus, Ricardo da Silva Antunes, Erin Moore, Paul Rubiro, Nils Methot, Elizabeth Phillips, Simon Mallal, April Frazier, Stephen A Rawlings, Jason A Greenbaum, Bjoern Peters, Davey M Smith, Shane Crotty, Daniela Weiskopf, Alba Grifoni, Alessandro Sette | Cell Reports. Medicine | 2021-01-26 |
| Absence of CCR2 reduces spontaneous intestinal tumorigenesis in the Apc mouse model. | Venkatakrishna Rao Jala, Sobha Rani Bodduluri, Sweta Ghosh, Zinal Chheda, Rajbir Singh, Michelle E Smith, Paula M Chilton, Christopher J Fleming, Steven Paul Mathis, Rajesh Kumar Sharma, Rob Knight, Jun Yan, Bodduluri Haribabu | International Journal Of Cancer | 2021-01-26 |
| Pangenome Analytics Reveal Two-Component Systems as Conserved Targets in ESKAPEE Pathogens. | Akanksha Rajput, Yara Seif, Kumari Sonal Choudhary, Christopher Dalldorf, Saugat Poudel, Jonathan M Monk, Bernhard O Palsson | MSystems | 2021-01-26 |
| Asymmetrizing an icosahedral virus capsid by hierarchical assembly of subunits with designed asymmetry. | Zhongchao Zhao, Joseph Che-Yen Wang, Mi Zhang, Nicholas A Lyktey, Martin F Jarrold, Stephen C Jacobson, Adam Zlotnick | Nature Communications | 2021-01-26 |
| Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. | Jeremiah J Minich, Farhana Ali, Clarisse Marotz, Pedro Belda-Ferre, Leslie Chiang, Justin P Shaffer, Carolina S Carpenter, Daniel McDonald, Jack Gilbert, Sarah M Allard, Eric E Allen, Rob Knight, Daniel A Sweeney, Austin D Swafford | Microbiome | 2021-01-22 |
| Metabolic differentiation and intercellular nurturing underpin bacterial endospore formation. | Eammon P Riley, Javier Lopez-Garrido, Joseph Sugie, Roland B Liu, Kit Pogliano | Science Advances | 2021-01-22 |
| Obesogenic Programming Effects during Lactation: A Narrative Review and Conceptual Model Focusing on Underlying Mechanisms and Promising Future Research Avenues. | Junilla K Larsen, Lars Bode | Nutrients | 2021-01-21 |
| Bacterial fitness landscapes stratify based on proteome allocation associated with discrete aero-types. | Ke Chen, Amitesh Anand, Connor Olson, Troy E Sandberg, Ye Gao, Nathan Mih, Bernhard O Palsson | PLoS Computational Biology | 2021-01-19 |
| Functional genomics and metabolomics advance the ethnobotany of the Samoan traditional medicine "matalafi". | Seeseei Molimau-Samasoni, Victoria Helen Woolner, Su'emalo Talie Foliga, Katharina Robichon, Vimal Patel, Sarah K Andreassend, Jeffrey P Sheridan, Tama Te Kawa, David Gresham, Darach Miller, Daniel J Sinclair, Anne C La Flamme, Alexey V Melnik, Allegra Aron, Pieter C Dorrestein, Paul H Atkinson, Robert A Keyzers, Andrew B Munkacsi | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-01-19 |
| Exploring the Impact of Ketodeoxynonulosonic Acid in Host-Pathogen Interactions Using Uptake and Surface Display by Nontypeable Haemophilus influenzae. | Sudeshna Saha, Alison Coady, Aniruddha Sasmal, Kunio Kawanishi, Biswa Choudhury, Hai Yu, Ricardo U Sorensen, Jaime Inostroza, Ian C Schoenhofen, Xi Chen, Anja Münster-Kühnel, Chihiro Sato, Ken Kitajima, Sanjay Ram, Victor Nizet, Ajit Varki | MBio | 2021-01-19 |
| Large-scale association analyses identify host factors influencing human gut microbiome composition. | Alexander Kurilshikov, Carolina Medina-Gomez, Rodrigo Bacigalupe, Djawad Radjabzadeh, Jun Wang, Ayse Demirkan, Caroline I Le Roy, Juan Antonio Raygoza Garay, Casey T Finnicum, Xingrong Liu, Daria V Zhernakova, Marc Jan Bonder, Tue H Hansen, Fabian Frost, Malte C Rühlemann, Williams Turpin, Jee-Young Moon, Han-Na Kim, Kreete Lüll, Elad Barkan, Shiraz A Shah, Myriam Fornage, Joanna Szopinska-Tokov, Zachary D Wallen, Dmitrii Borisevich, Lars Agreus, Anna Andreasson, Corinna Bang, Larbi Bedrani, Jordana T Bell, Hans Bisgaard, Michael Boehnke, Dorret I Boomsma, Robert D Burk, Annique Claringbould, Kenneth Croitoru, Gareth E Davies, Cornelia M van Duijn, Liesbeth Duijts, Gwen Falony, Jingyuan Fu, Adriaan van der Graaf, Torben Hansen, Georg Homuth, David A Hughes, Richard G Ijzerman, Matthew A Jackson, Vincent W V Jaddoe, Marie Joossens, Torben Jørgensen, Daniel Keszthelyi, Rob Knight, Markku Laakso, Matthias Laudes, Lenore J Launer, Wolfgang Lieb, Aldons J Lusis, Ad A M Masclee, Henriette A Moll, Zlatan Mujagic, Qi Qibin, Daphna Rothschild, Hocheol Shin, Søren J Sørensen, Claire J Steves, Jonathan Thorsen, Nicholas J Timpson, Raul Y Tito, Sara Vieira-Silva, Uwe Völker, Henry Völzke, Urmo Võsa, Kaitlin H Wade, Susanna Walter, Kyoko Watanabe, Stefan Weiss, Frank U Weiss, Omer Weissbrod, Harm-Jan Westra, Gonneke Willemsen, Haydeh Payami, Daisy M A E Jonkers, Alejandro Arias Vasquez, Eco J C de Geus, Katie A Meyer, Jakob Stokholm, Eran Segal, Elin Org, Cisca Wijmenga, Hyung-Lae Kim, Robert C Kaplan, Tim D Spector, Andre G Uitterlinden, Fernando Rivadeneira, Andre Franke, Markus M Lerch, Lude Franke, Serena Sanna, Mauro D'Amato, Oluf Pedersen, Andrew D Paterson, Robert Kraaij, Jeroen Raes, Alexandra Zhernakova | Nature Genetics | 2021-01-18 |
| Airborne Transmission of SARS-CoV-2: What We Know. | Jonathan M Samet, Kimberly Prather, Georges Benjamin, Seema Lakdawala, John-Martin Lowe, Arthur Reingold, John Volckens, Linsey Marr | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-01-18 |
| Microbiome Signatures in a Fast- and Slow-Progressing Gastric Cancer Murine Model and Their Contribution to Gastric Carcinogenesis. | Prerna Bali, Joanna Coker, Ivonne Lozano-Pope, Karsten Zengler, Marygorret Obonyo | Microorganisms | 2021-01-17 |
| Novel Models of Colonization and Disease Reveal Modest Contributions of M-Like (SCM) Protein. | Ingrid Cornax, Jacob Zulk, Joshua Olson, Marcus Fulde, Victor Nizet, Kathryn A Patras | Microorganisms | 2021-01-16 |
| Differential T cell reactivity to seasonal coronaviruses and SARS-CoV-2 in community and health care workers. | Ricardo da Silva Antunes, Suresh Pallikkuth, Erin Williams, Esther Dawen Yu, Jose Mateus, Lorenzo Quiambao, Eric Wang, Stephen A Rawlings, Daniel Stadlbauer, Kaijun Jiang, Fatima Amanat, David Arnold, David Andrews, Irma Fuego, Jennifer M Dan, Alba Grifoni, Daniela Weiskopf, Florian Krammer, Shane Crotty, Michael E Hoffer, Savita G Pahwa, Alessandro Sette | MedRxiv : The Preprint Server For Health Sciences | 2021-01-15 |
| New Developments in Microbiome in Alcohol-Associated and Nonalcoholic Fatty Liver Disease. | Phillipp Hartmann, Bernd Schnabl | Seminars In Liver Disease | 2021-01-14 |
| Enterobactin- and salmochelin-β-lactam conjugates induce cell morphologies consistent with inhibition of penicillin-binding proteins in uropathogenic CFT073. | Artur Sargun, Timothy C Johnstone, Hui Zhi, Manuela Raffatellu, Elizabeth M Nolan | Chemical Science | 2021-01-13 |
| A Novel N4-Like Bacteriophage Isolated from a Wastewater Source in South India with Activity against Several Multidrug-Resistant Clinical Pseudomonas aeruginosa Isolates. | Nitasha D Menon, Megha S Kumar, T G Satheesh Babu, Sucharita Bose, Gayathri Vijayakumar, Manasi Baswe, Meghna Chatterjee, Jovita Rowena D'Silva, Kavya Shetty, Jayalekshmi Haripriyan, Anil Kumar, Samitha Nair, Priyanka Somanath, Bipin G Nair, Victor Nizet, Geetha B Kumar | MSphere | 2021-01-13 |
| Adaptive immunity to SARS-CoV-2 and COVID-19. | Alessandro Sette, Shane Crotty | Cell | 2021-01-12 |
| Early detection of tumor cells in bone marrow and peripheral blood in a fast‑progressing gastric cancer model. | Prerna Bali, Ivonne Lozano-Pope, Collin Pachow, Marygorret Obonyo | International Journal Of Oncology | 2021-01-12 |
| Skin inflammation activates intestinal stromal fibroblasts and promotes colitis. | Tatsuya Dokoshi, Jason S Seidman, Kellen J Cavagnero, Fengwu Li, Marc C Liggins, Bryn C Taylor, Jocelyn Olvera, Rob Knight, John T Chang, Nita H Salzman, Richard L Gallo | The Journal Of Clinical Investigation | 2021-01-12 |
| Viral speciation through subcellular genetic isolation and virogenesis incompatibility. | Vorrapon Chaikeeratisak, Erica A Birkholz, Amy M Prichard, MacKennon E Egan, Avani Mylvara, Poochit Nonejuie, Katrina T Nguyen, Joseph Sugie, Justin R Meyer, Joe Pogliano | Nature Communications | 2021-01-12 |
| Exposure to Epstein Barr virus and cognitive functioning in individuals with schizophrenia. | Faith Dickerson, Emily Katsafanas, Andrea Origoni, Amalia Squire, Sunil Khushalani, Theresa Newman, Kelly Rowe, Cassie Stallings, Christina L G Savage, Kevin Sweeney, Tanya T Nguyen, Alan Breier, Donald Goff, Glen Ford, Lorraine Jones-Brando, Robert Yolken | Schizophrenia Research | 2021-01-12 |
| Ticagrelor Increases Platelet-Mediated Staphylococcus aureus Killing, Resulting in Clearance of Bacteremia. | Erlinda R Ulloa, Satoshi Uchiyama, Robert Gillespie, Victor Nizet, George Sakoulas | The Journal Of Infectious Diseases | 2021-01-11 |
| High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing. | Søren M Karst, Ryan M Ziels, Rasmus H Kirkegaard, Emil A Sørensen, Daniel McDonald, Qiyun Zhu, Rob Knight, Mads Albertsen | Nature Methods | 2021-01-11 |
| Gut Microbial Ecosystem in Parkinson Disease: New Clinicobiological Insights from Multi-Omics. | Ai Huey Tan, Chun Wie Chong, Shen-Yang Lim, Ivan Kok Seng Yap, Cindy Shuan Ju Teh, Mun Fai Loke, Sze-Looi Song, Jiun Yan Tan, Ban Hong Ang, Yong Qi Tan, Mee Teck Kho, Jeff Bowman, Sanjiv Mahadeva, Hoi Sen Yong, Anthony E Lang | Annals Of Neurology | 2021-01-11 |
| HiDeF: identifying persistent structures in multiscale 'omics data. | Fan Zheng, She Zhang, Christopher Churas, Dexter Pratt, Ivet Bahar, Trey Ideker | Genome Biology | 2021-01-07 |
| Immunological memory to SARS-CoV-2 assessed for up to 8 months after infection. | Jennifer M Dan, Jose Mateus, Yu Kato, Kathryn M Hastie, Esther Dawen Yu, Caterina E Faliti, Alba Grifoni, Sydney I Ramirez, Sonya Haupt, April Frazier, Catherine Nakao, Vamseedhar Rayaprolu, Stephen A Rawlings, Bjoern Peters, Florian Krammer, Viviana Simon, Erica Ollmann Saphire, Davey M Smith, Daniela Weiskopf, Alessandro Sette, Shane Crotty | Science (New York, N.Y.) | 2021-01-06 |
| Chronically elevated depressive symptoms interact with acute increases in inflammation to predict worse neurocognition among people with HIV. | Rowan Saloner, Emily W Paolillo, Robert K Heaton, David J Grelotti, Murray B Stein, Andrew H Miller, J Hampton Atkinson, Scott L Letendre, Ronald J Ellis, Igor Grant, Jennifer E Iudicello, David J Moore | Journal Of Neurovirology | 2021-01-06 |
| A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria. | Tiago Leão, Mingxun Wang, Nathan Moss, Ricardo da Silva, Jon Sanders, Sergey Nurk, Alexey Gurevich, Gregory Humphrey, Raphael Reher, Qiyun Zhu, Pedro Belda-Ferre, Evgenia Glukhov, Syrena Whitner, Kelsey L Alexander, Robert Rex, Pavel Pevzner, Pieter C Dorrestein, Rob Knight, Nuno Bandeira, William H Gerwick, Lena Gerwick | Marine Drugs | 2021-01-06 |
| Systems and synthetic biology to elucidate secondary metabolite biosynthetic gene clusters encoded in genomes. | Namil Lee, Soonkyu Hwang, Woori Kim, Yongjae Lee, Ji Hun Kim, Suhyung Cho, Hyun Uk Kim, Yeo Joon Yoon, Min-Kyu Oh, Bernhard O Palsson, Byung-Kwan Cho | Natural Product Reports | 2021-01-05 |
| Effects of Immunization With the Soil-Derived Bacterium on Stress Coping Behaviors and Cognitive Performance in a "Two Hit" Stressor Model. | Christine L Foxx, Jared D Heinze, Antonio González, Fernando Vargas, Michael V Baratta, Ahmed I Elsayed, Jessica R Stewart, Kelsey M Loupy, Mathew R Arnold, M C Flux, Saydie A Sago, Philip H Siebler, Lauren N Milton, Margaret W Lieb, James E Hassell, David G Smith, Kyo A K Lee, Sandra A Appiah, Evan J Schaefer, Morgan Panitchpakdi, Nicole C Sikora, Kelly C Weldon, Christopher E Stamper, Dominic Schmidt, David A Duggan, Yosan M Mengesha, Mikale Ogbaselassie, Kadi T Nguyen, Chloe A Gates, K'loni Schnabel, Linh Tran, Joslynn D Jones, Martha H Vitaterna, Fred W Turek, Monika Fleshner, Pieter C Dorrestein, Rob Knight, Kenneth P Wright, Christopher A Lowry | Frontiers In Physiology | 2021-01-05 |
| Microbiome for Mars: surveying microbiome connections to healthcare with implications for long-duration human spaceflight, virtual workshop, July 13, 2020. | Michael LaPelusa, Dorit Donoviel, Sergio E Branzini, Paul E Carlson, Stephanie Culler, Amrita K Cheema, Rima Kaddurah-Daouk, Denise Kelly, Isabelle de Cremoux, Rob Knight, Rosa Krajmalnik-Brown, Stephen L Mayo, Sarkis K Mazmanian, Emeran A Mayer, Joseph F Petrosino, Keith Garrison | Microbiome | 2021-01-04 |
| Reply to: Examining microbe-metabolite correlations by linear methods. | James T Morton, Daniel McDonald, Alexander A Aksenov, Louis Felix Nothias, James R Foulds, Robert A Quinn, Michelle H Badri, Tami L Swenson, Marc W Van Goethem, Trent R Northen, Yoshiki Vazquez-Baeza, Mingxun Wang, Nicholas A Bokulich, Aaron Watters, Se Jin Song, Richard Bonneau, Pieter C Dorrestein, Rob Knight | Nature Methods | 2021-01-04 |
| Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater. | Daniel Petras, Jeremiah J Minich, Lucia B Cancelada, Ralph R Torres, Emily Kunselman, Mingxun Wang, Margot E White, Eric E Allen, Kimberly A Prather, Lihini I Aluwihare, Pieter C Dorrestein | Chemosphere | 2021-01-02 |
| COVID-19 and Cancer Comorbidity: Therapeutic Opportunities and Challenges. | Anup S Pathania, Philip Prathipati, Bakrudeen Aa Abdul, Srinivas Chava, Santharam S Katta, Subash C Gupta, Pandu R Gangula, Manoj K Pandey, Donald L Durden, Siddappa N Byrareddy, Kishore B Challagundla | Theranostics | 2021-01-01 |
| COVID19 - Computational Chemists Meet the Moment. | Adrian J Mulholland, Rommie E Amaro | Journal Of Chemical Information And Modeling | 2020-12-31 |
| Pathophysiology of Inflammatory Bowel Diseases. | John T Chang | The New England Journal Of Medicine | 2020-12-31 |
| Site-Specific Conjugation of Cell Wall Polyrhamnose to Protein SpyAD Envisioning a Safe Universal Group A Streptococcal Vaccine. | Nina J Gao, Satoshi Uchiyama, Lucy Pill, Samira Dahesh, Joshua Olson, Leslie Bautista, Shilpa Maroju, Aym Berges, Janet Z Liu, Raymond H Zurich, Nina van Sorge, Jeff Fairman, Neeraj Kapoor, Victor Nizet | Infectious Microbes & Diseases | 2020-12-29 |
| Genomics Links Inflammation with Neurocognitive Impairment in Children Living with Human Immunodeficiency Virus type-1. | Pratima Rawat, Sean S Brummel, Kumud K Singh, Jihoon Kim, Kelly A Frazer, Sharon Nichols, George R Seage Iii, Paige L Williams, Russell B Van Dyke, Olivier Harismendy, Rodney N Trout, Stephen A Spector, | The Journal Of Infectious Diseases | 2020-12-29 |
| SARS-CoV-2 escape from a highly neutralizing COVID-19 convalescent plasma. | Emanuele Andreano, Giulia Piccini, Danilo Licastro, Lorenzo Casalino, Nicole V Johnson, Ida Paciello, Simeone Dal Monego, Elisa Pantano, Noemi Manganaro, Alessandro Manenti, Rachele Manna, Elisa Casa, Inesa Hyseni, Linda Benincasa, Emanuele Montomoli, Rommie E Amaro, Jason S McLellan, Rino Rappuoli | BioRxiv : The Preprint Server For Biology | 2020-12-28 |
| Data-driven noise modeling of digital DNA melting analysis enables prediction of sequence discriminating power. | Lennart Langouche, April Aralar, Mridu Sinha, Shelley M Lawrence, Stephanie I Fraley, Todd P Coleman | Bioinformatics (Oxford, England) | 2020-12-23 |
| Screening and characterization of polyhydroxyalkanoate granules, and phylogenetic analysis of polyhydroxyalkanoate synthase gene PhaC in cyanobacteria. | Karl Hong, Joris Beld, Tony D Davis, Michael D Burkart, Brian Palenik | Journal Of Phycology | 2020-12-22 |
| Natural Products with Potential to Treat RNA Virus Pathogens Including SARS-CoV-2. | Mitchell P Christy, Yoshinori Uekusa, Lena Gerwick, William H Gerwick | Journal Of Natural Products | 2020-12-22 |
| Application of the Relationship-Based Model to Engagement for Field Trials of Genetically Engineered Malaria Vectors. | Ana Kormos, Gregory C Lanzaro, Ethan Bier, George Dimopoulos, John M Marshall, João Pinto, Adionilde Aguiar Dos Santos, Affane Bacar, Herodes Sousa Pontes Sacramento Rompão, Anthony A James | The American Journal Of Tropical Medicine And Hygiene | 2020-12-21 |
| Immunological memory to SARS-CoV-2 assessed for up to eight months after infection. | Jennifer M Dan, Jose Mateus, Yu Kato, Kathryn M Hastie, Esther Dawen Yu, Caterina E Faliti, Alba Grifoni, Sydney I Ramirez, Sonya Haupt, April Frazier, Catherine Nakao, Vamseedhar Rayaprolu, Stephen A Rawlings, Bjoern Peters, Florian Krammer, Viviana Simon, Erica Ollmann Saphire, Davey M Smith, Daniela Weiskopf, Alessandro Sette, Shane Crotty | BioRxiv : The Preprint Server For Biology | 2020-12-18 |
| Coinfection and infection duration shape how pathogens affect the African buffalo gut microbiota. | Kate A Sabey, Se Jin Song, Anna Jolles, Rob Knight, Vanessa O Ezenwa | The ISME Journal | 2020-12-17 |
| Harnessing Iron Acquisition Machinery to Target Enterobacteriaceae. | Artur Sargun, Romana R Gerner, Manuela Raffatellu, Elizabeth M Nolan | The Journal Of Infectious Diseases | 2020-12-17 |
| Maternal diet alters human milk oligosaccharide composition with implications for the milk metagenome. | Maxim D Seferovic, Mahmoud Mohammad, Ryan M Pace, Melinda Engevik, James Versalovic, Lars Bode, Morey Haymond, Kjersti M Aagaard | Scientific Reports | 2020-12-16 |
| Human milk oligosaccharide DSLNT and gut microbiome in preterm infants predicts necrotising enterocolitis. | Andrea C Masi, Nicholas D Embleton, Christopher A Lamb, Gregory Young, Claire L Granger, Julia Najera, Daniel P Smith, Kristi L Hoffman, Joseph F Petrosino, Lars Bode, Janet E Berrington, Christopher J Stewart | Gut | 2020-12-16 |
| Genome-scale determination of 5´ and 3´ boundaries of RNA transcripts in Streptomyces genomes. | Yongjae Lee, Namil Lee, Soonkyu Hwang, Woori Kim, Yujin Jeong, Suhyung Cho, Bernhard O Palsson, Byung-Kwan Cho | Scientific Data | 2020-12-15 |
| Gut microbiome directs hepatocytes to recruit MDSC and promote cholangiocarcinoma. | Qianfei Zhang, Chi Ma, Yi Duan, Bernd Heinrich, Umberto Rosato, Laurence P Diggs, Lichun Ma, Soumen Roy, Qiong Fu, Zachary J Brown, Simon Wabitsch, Vishal Thovarai, Jianyang Fu, Dechun Feng, Benjamin Ruf, Linda L Cui, Varun Subramanyam, Karen M Frank, Sophie Wang, David E Kleiner, Thomas Ritz, Christian Rupp, Bin Gao, Thomas Longerich, Alexander Kroemer, Xin Wei Wang, Mathuros Ruchirawat, Firouzeh Korangy, Bernd Schnabl, Giorgio Trinchieri, Tim F Greten | Cancer Discovery | 2020-12-15 |
| Gut microbiome, liver immunology, and liver diseases. | Rui Wang, Ruqi Tang, Bo Li, Xiong Ma, Bernd Schnabl, Herbert Tilg | Cellular & Molecular Immunology | 2020-12-14 |
| The Commensal Microbe Veillonella as a Marker for Response to an FGF19 Analog in NASH. | Rohit Loomba, Lei Ling, Duy M Dinh, Alex M DePaoli, Hsiao D Lieu, Stephen A Harrison, Arun J Sanyal | Hepatology (Baltimore, Md.) | 2020-12-11 |
| Machine learning uncovers independently regulated modules in the Bacillus subtilis transcriptome. | Kevin Rychel, Anand V Sastry, Bernhard O Palsson | Nature Communications | 2020-12-11 |
| Gut dysbiosis as a driver in alcohol-induced liver injury. | Bradley Fairfield, Bernd Schnabl | JHEP Reports : Innovation In Hepatology | 2020-12-10 |
| Identification of a Novel Susceptibility Marker for SARS-CoV-2 Infection in Human Subjects and Risk Mitigation with a Clinically Approved JAK Inhibitor in Human/Mouse Cells. | Marianne R Spalinger, Rong Hai, Jiang Li, Alina N Santos, Tara M Nordgren, Michel L Tremblay, Lars Eckmann, Elaine Hanson, Michael Scharl, Xiwei Wu, Brigid S Boland, Declan F McCole | BioRxiv : The Preprint Server For Biology | 2020-12-09 |
| Effects of Extended Postmortem Interval on Microbial Communities in Organs of the Human Cadaver. | Holly Lutz, Alexandria Vangelatos, Neil Gottel, Antonio Osculati, Silvia Visona, Sheree J Finley, Jack A Gilbert, Gulnaz T Javan | Frontiers In Microbiology | 2020-12-08 |
| Neonatal Diet Impacts the Large Intestine Luminal Metabolome at Weaning and Post-Weaning in Piglets Fed Formula or Human Milk. | Fernanda Rosa, Katelin S Matazel, Anne K Bowlin, Keith D Williams, Ahmed A Elolimy, Sean H Adams, Lars Bode, Laxmi Yeruva | Frontiers In Immunology | 2020-12-07 |
| The Gut Microbiome, Aging, and Longevity: A Systematic Review. | Varsha D Badal, Eleonora D Vaccariello, Emily R Murray, Kasey E Yu, Rob Knight, Dilip V Jeste, Tanya T Nguyen | Nutrients | 2020-12-07 |
| Short chain fatty acids produced by Cutibacterium acnes inhibit biofilm formation by Staphylococcus epidermidis. | Kouki Nakamura, Alan M O'Neill, Michael R Williams, Laura Cau, Teruaki Nakatsuji, Alexander R Horswill, Richard L Gallo | Scientific Reports | 2020-12-04 |
| Understanding Microbial Community Dynamics in Up-Flow Bioreactors to Improve Mitigation Strategies for Oil Souring. | Avishek Dutta, Ben Smith, Thomas Goldman, Leanne Walker, Matthew Streets, Bob Eden, Reinhard Dirmeier, Jeff S Bowman | Frontiers In Microbiology | 2020-12-03 |
| Multiplexed CRISPR/CAS9-mediated engineering of pre-clinical mouse models bearing native human B cell receptors. | Xuesong Wang, Rashmi Ray, Sven Kratochvil, Eleonora Melzi, Ying-Cing Lin, Sophie Giguere, Liling Xu, John Warner, Diane Cheon, Alessia Liguori, Bettina Groschel, Nicole Phelps, Yumiko Adachi, Ryan Tingle, Lin Wu, Shane Crotty, Kathrin H Kirsch, Usha Nair, William R Schief, Facundo D Batista | The EMBO Journal | 2020-12-01 |
| Engineered Biomimetic Platelet Membrane-Coated Nanoparticles Block Cytotoxicity and Protect Against Lethal Systemic Infection. | Jwa-Kyung Kim, Satoshi Uchiyama, Hua Gong, Alexandra Stream, Liangfang Zhang, Victor Nizet | Engineering (Beijing, China) | 2020-12-01 |
| Erratum for Rivera-Hernandez et al., "An Experimental Group A Vaccine That Reduces Pharyngitis and Tonsillitis in a Nonhuman Primate Model". | Tania Rivera-Hernandez, Diane G Carnathan, Scott Jones, Amanda J Cork, Mark R Davies, Peter M Moyle, Istvan Toth, Michael R Batzloff, James McCarthy, Victor Nizet, David Goldblatt, Guido Silvestri, Mark J Walker | MBio | 2020-12-01 |
| A multiscale coarse-grained model of the SARS-CoV-2 virion. | Alvin Yu, Alexander J Pak, Peng He, Viviana Monje-Galvan, Lorenzo Casalino, Zied Gaieb, Abigail C Dommer, Rommie E Amaro, Gregory A Voth | Biophysical Journal | 2020-11-28 |
| Survival of the weakest in non-transitive asymmetric interactions among strains of E. coli. | Michael J Liao, Arianna Miano, Chloe B Nguyen, Lin Chao, Jeff Hasty | Nature Communications | 2020-11-27 |
| Role of Epigenetics in the Regulation of Immune Functions of the Skin. | Yu Sawada, Richard L Gallo | The Journal Of Investigative Dermatology | 2020-11-27 |
| Vitamin D metabolites and the gut microbiome in older men. | Robert L Thomas, Lingjing Jiang, John S Adams, Zhenjiang Zech Xu, Jian Shen, Stefan Janssen, Gail Ackermann, Dirk Vanderschueren, Steven Pauwels, Rob Knight, Eric S Orwoll, Deborah M Kado | Nature Communications | 2020-11-26 |
| Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules. | Jonathon L Baker, James T Morton, Márcia Dinis, Ruth Alvarez, Nini C Tran, Rob Knight, Anna Edlund | Genome Research | 2020-11-25 |
| Cell-free DNA (cfDNA) and Exosome Profiling from a Year-Long Human Spaceflight Reveals Circulating Biomarkers. | Daniela Bezdan, Kirill Grigorev, Cem Meydan, Fanny A Pelissier Vatter, Michele Cioffi, Varsha Rao, Matthew MacKay, Kiichi Nakahira, Philip Burnham, Ebrahim Afshinnekoo, Craig Westover, Daniel Butler, Chris Mozsary, Timothy Donahoe, Jonathan Foox, Tejaswini Mishra, Serena Lucotti, Brinda K Rana, Ari M Melnick, Haiying Zhang, Irina Matei, David Kelsen, Kenneth Yu, David C Lyden, Lynn Taylor, Susan M Bailey, Michael P Snyder, Francine E Garrett-Bakelman, Stephan Ossowski, Iwijn De Vlaminck, Christopher E Mason | IScience | 2020-11-25 |
| Hindering triple negative breast cancer progression by targeting endogenous interleukin-30 requires IFNγ signaling. | Carlo Sorrentino, Stefania Livia Ciummo, Luigi D'Antonio, Paola Lanuti, Scott I Abrams, Zhinan Yin, Li-Fan Lu, Emma Di Carlo | Clinical And Translational Medicine | 2020-11-24 |
| Microbiome of the Aerodigestive Tract in Health and Esophageal Disease. | Aws Hasan, Laith K Hasan, Bernd Schnabl, Madeline Greytak, Rena Yadlapati | Digestive Diseases And Sciences | 2020-11-24 |
| Expansion of Gamma-Butyrolactone Signaling Molecule Biosynthesis to Phosphotriester Natural Products. | Yuta Kudo, Takayoshi Awakawa, Yi-Ling Du, Peter A Jordan, Kaitlin E Creamer, Paul R Jensen, Roger G Linington, Katherine S Ryan, Bradley S Moore | ACS Chemical Biology | 2020-11-24 |
| Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra. | Kai Dührkop, Louis-Félix Nothias, Markus Fleischauer, Raphael Reher, Marcus Ludwig, Martin A Hoffmann, Daniel Petras, William H Gerwick, Juho Rousu, Pieter C Dorrestein, Sebastian Böcker | Nature Biotechnology | 2020-11-23 |
| Spatial and temporal variations in Synechococcus microdiversity in the Southern California coastal ecosystem. | Maitreyi Nagarkar, Maggie Wang, Bellineth Valencia, Brian Palenik | Environmental Microbiology | 2020-11-23 |
| Triclosan leads to dysregulation of the metabolic regulator FGF21 exacerbating high fat diet-induced nonalcoholic fatty liver disease. | Mei-Fei Yueh, Feng He, Chen Chen, Catherine Vu, Anupriya Tripathi, Rob Knight, Michael Karin, Shujuan Chen, Robert H Tukey | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-11-23 |
| AI-Driven Multiscale Simulations Illuminate Mechanisms of SARS-CoV-2 Spike Dynamics. | Lorenzo Casalino, Abigail Dommer, Zied Gaieb, Emilia P Barros, Terra Sztain, Surl-Hee Ahn, Anda Trifan, Alexander Brace, Anthony Bogetti, Heng Ma, Hyungro Lee, Matteo Turilli, Syma Khalid, Lillian Chong, Carlos Simmerling, David J Hardy, Julio D C Maia, James C Phillips, Thorsten Kurth, Abraham Stern, Lei Huang, John McCalpin, Mahidhar Tatineni, Tom Gibbs, John E Stone, Shantenu Jha, Arvind Ramanathan, Rommie E Amaro | BioRxiv : The Preprint Server For Biology | 2020-11-20 |
| Multiomics Analysis Provides Insight into the Laboratory Evolution of toward the Metabolic Usage of Fluorinated Indoles. | Federica Agostini, Ludwig Sinn, Daniel Petras, Christian J Schipp, Vladimir Kubyshkin, Allison Ann Berger, Pieter C Dorrestein, Juri Rappsilber, Nediljko Budisa, Beate Koksch | ACS Central Science | 2020-11-20 |
| "[It] is now my responsibility to fulfill that wish:" Clinical and rapid autopsy staff members' experiences and perceptions of HIV reservoir research at the end of life. | Kelly E Perry, Jeff Taylor, Hursch Patel, Sogol Stephanie Javadi, Kushagra Mathur, Andy Kaytes, Susanna Concha-Garcia, Susan Little, Davey Smith, Sara Gianella, Karine Dubé | PloS One | 2020-11-18 |
| Targeting the renin-angiotensin signaling pathway in COVID-19: Unanswered questions, opportunities, and challenges. | Krishna Sriram, Rohit Loomba, Paul A Insel | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-11-17 |
| Targeting pathobionts for the treatment of alcohol-associated liver disease. | Sonja Lang, Münevver Demir, Bernd Schnabl | Liver International : Official Journal Of The International Association For The Study Of The Liver | 2020-11-17 |
| Effective Human Immunodeficiency Virus Molecular Surveillance Requires Identification of Incident Cases of Infection. | Susan J Little, Tom Chen, Rui Wang, Christy Anderson, Sergei Kosakovsky Pond, Masato Nakazawa, William C Mathews, Victor DeGruttola, Davey M Smith | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2020-11-17 |
| Intersection of Polycystic Ovary Syndrome and the Gut Microbiome. | Maryan G Rizk, Varykina G Thackray | Journal Of The Endocrine Society | 2020-11-16 |
| Chemically informed analyses of metabolomics mass spectrometry data with Qemistree. | Anupriya Tripathi, Yoshiki Vázquez-Baeza, Julia M Gauglitz, Mingxun Wang, Kai Dührkop, Mélissa Nothias-Esposito, Deepa D Acharya, Madeleine Ernst, Justin J J van der Hooft, Qiyun Zhu, Daniel McDonald, Asker D Brejnrod, Antonio Gonzalez, Jo Handelsman, Markus Fleischauer, Marcus Ludwig, Sebastian Böcker, Louis-Félix Nothias, Rob Knight, Pieter C Dorrestein | Nature Chemical Biology | 2020-11-16 |
| Call for Original Research Papers for a Special Collection in : the Microbiome and Infection. | Manuela Raffatellu, Andreas J Bäumler | Infection And Immunity | 2020-11-16 |
| The Balance of Stromal BMP Signaling Mediated by GREM1 and ISLR Drives Colorectal Carcinogenesis. | Hiroki Kobayashi, Krystyna A Gieniec, Josephine A Wright, Tongtong Wang, Naoya Asai, Yasuyuki Mizutani, Tadashi Lida, Ryota Ando, Nobumi Suzuki, Tamsin R M Lannagan, Jia Q Ng, Akitoshi Hara, Yukihiro Shiraki, Shinji Mii, Mari Ichinose, Laura Vrbanac, Matthew J Lawrence, Tarik Sammour, Kay Uehara, Gareth Davies, Leszek Lisowski, Ian E Alexander, Yoku Hayakawa, Lisa M Butler, Andrew C W Zannettino, M Omar Din, Jeff Hasty, Alastair D Burt, Simon J Leedham, Anil K Rustgi, Siddhartha Mukherjee, Timothy C Wang, Atsushi Enomoto, Masahide Takahashi, Daniel L Worthley, Susan L Woods | Gastroenterology | 2020-11-14 |
| Sphingosine 1-Phosphate Receptor 2 Is Central to Maintaining Epidermal Barrier Homeostasis. | Satomi Igawa, Ayaka Ohzono, Phoebe Pham, Zhenping Wang, Teruaki Nakatsuji, Tatsuya Dokoshi, Anna Di Nardo | The Journal Of Investigative Dermatology | 2020-11-14 |
| The flexibility of ACE2 in the context of SARS-CoV-2 infection. | Emilia P Barros, Lorenzo Casalino, Zied Gaieb, Abigail C Dommer, Yuzhang Wang, Lucy Fallon, Lauren Raguette, Kellon Belfon, Carlos Simmerling, Rommie E Amaro | Biophysical Journal | 2020-11-13 |
| High-Quality Genome-Scale Models From Error-Prone, Long-Read Assemblies. | Jared T Broddrick, Richard Szubin, Charles J Norsigian, Jonathan M Monk, Bernhard O Palsson, Mary N Parenteau | Frontiers In Microbiology | 2020-11-12 |
| Fungal-bacterial interaction selects for quorum sensing mutants with increased production of natural antifungal compounds. | Andrea G Albarracín Orio, Daniel Petras, Romina A Tobares, Alexander A Aksenov, Mingxun Wang, Florencia Juncosa, Pamela Sayago, Alejandro J Moyano, Pieter C Dorrestein, Andrea M Smania | Communications Biology | 2020-11-12 |
| Bare Versus Hair: Do Pubic Hair Grooming Preferences Dictate the Urogenital Microbiome? | Julia Geynisman-Tan, Kimberly Kenton, Meera Tavathia, Alyson Yee, Jack A Gilbert, Sarah Collins, Christina Lewicky-Gaupp, Margaret Mueller | Female Pelvic Medicine & Reconstructive Surgery | 2020-11-11 |
| Elucidation of Regulatory Modes for Five Two-Component Systems in Escherichia coli Reveals Novel Relationships. | Kumari Sonal Choudhary, Julia A Kleinmanns, Katherine Decker, Anand V Sastry, Ye Gao, Richard Szubin, Yara Seif, Bernhard O Palsson | MSystems | 2020-11-10 |
| Comparative Circulation Dynamics of the Five Main HIV Types in China. | Bram Vrancken, Bin Zhao, Xingguang Li, Xiaoxu Han, Haizhou Liu, Jin Zhao, Ping Zhong, Yi Lin, Junjie Zai, Mingchen Liu, Davey M Smith, Simon Dellicour, Antoine Chaillon | Journal Of Virology | 2020-11-09 |
| Review of Cardiac Involvement in Multisystem Inflammatory Syndrome in Children. | Tarek Alsaied, Adriana H Tremoulet, Jane C Burns, Arwa Saidi, Audrey Dionne, Sean M Lang, Jane W Newburger, Sarah de Ferranti, Kevin G Friedman | Circulation | 2020-11-09 |
| Semicontinuous system for the production of recombinant mCherry protein in Chlamydomonas reinhardtii. | Cesar Andres Diaz Arias, Marcelo Chuei Matsudo, Livia Seno Ferreira-Camargo, João Vitor Dutra Molino, Stephen Patrick Mayfield, João Carlos Monteiro de Carvalho | Biotechnology Progress | 2020-11-09 |
| Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data. | Alexander A Aksenov, Ivan Laponogov, Zheng Zhang, Sophie L F Doran, Ilaria Belluomo, Dennis Veselkov, Wout Bittremieux, Louis Felix Nothias, Mélissa Nothias-Esposito, Katherine N Maloney, Biswapriya B Misra, Alexey V Melnik, Aleksandr Smirnov, Xiuxia Du, Kenneth L Jones, Kathleen Dorrestein, Morgan Panitchpakdi, Madeleine Ernst, Justin J J van der Hooft, Mabel Gonzalez, Chiara Carazzone, Adolfo Amézquita, Chris Callewaert, James T Morton, Robert A Quinn, Amina Bouslimani, Andrea Albarracín Orio, Daniel Petras, Andrea M Smania, Sneha P Couvillion, Meagan C Burnet, Carrie D Nicora, Erika Zink, Thomas O Metz, Viatcheslav Artaev, Elizabeth Humston-Fulmer, Rachel Gregor, Michael M Meijler, Itzhak Mizrahi, Stav Eyal, Brooke Anderson, Rachel Dutton, Raphaël Lugan, Pauline Le Boulch, Yann Guitton, Stephanie Prevost, Audrey Poirier, Gaud Dervilly, Bruno Le Bizec, Aaron Fait, Noga Sikron Persi, Chao Song, Kelem Gashu, Roxana Coras, Monica Guma, Julia Manasson, Jose U Scher, Dinesh Kumar Barupal, Saleh Alseekh, Alisdair R Fernie, Reza Mirnezami, Vasilis Vasiliou, Robin Schmid, Roman S Borisov, Larisa N Kulikova, Rob Knight, Mingxun Wang, George B Hanna, Pieter C Dorrestein, Kirill Veselkov | Nature Biotechnology | 2020-11-09 |
| Response of Horticultural Soil Microbiota to Different Fertilization Practices. | Iratxe Zarraonaindia, Xabier Simón Martínez-Goñi, Olaia Liñero, Marta Muñoz-Colmenero, Mikel Aguirre, David Abad, Igor Baroja-Careaga, Alberto de Diego, Jack A Gilbert, Andone Estonba | Plants (Basel, Switzerland) | 2020-11-06 |
| Alterations in Gut Microbiota Do Not Play a Causal Role in Diet-independent Weight Gain Caused by Ovariectomy. | Lillian Sau, Christine M Olmstead, Laura J Cui, Annie Chen, Reeya S Shah, Scott T Kelley, Varykina G Thackray | Journal Of The Endocrine Society | 2020-11-05 |
| Verrucosamide, a Cytotoxic 1,4-Thiazepane-Containing Thiodepsipeptide from a Marine-Derived Actinomycete. | Vimal Nair, Min Cheol Kim, James A Golen, Arnold L Rheingold, Gabriel A Castro, Paul R Jensen, William Fenical | Marine Drugs | 2020-11-05 |
| The gut mycobiome: a novel player in chronic liver diseases. | Lu Jiang, Peter Stärkel, Jian-Gao Fan, Derrick Eugene Fouts, Petra Bacher, Bernd Schnabl | Journal Of Gastroenterology | 2020-11-05 |
| Coronavirus, social distancing, and global geriatric mental health crisis: opportunities for promoting wisdom and resilience amid a pandemic. | Dilip V Jeste | International Psychogeriatrics | 2020-11-05 |
| A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis. | Tae Gyu Oh, Susy M Kim, Cyrielle Caussy, Ting Fu, Jian Guo, Shirin Bassirian, Seema Singh, Egbert V Madamba, Ricki Bettencourt, Lisa Richards, Ruth T Yu, Annette R Atkins, Tao Huan, David A Brenner, Claude B Sirlin, Michael Downes, Ronald M Evans, Rohit Loomba | Cell Metabolism | 2020-11-04 |
| Host variables confound gut microbiota studies of human disease. | Ivan Vujkovic-Cvijin, Jack Sklar, Lingjing Jiang, Loki Natarajan, Rob Knight, Yasmine Belkaid | Nature | 2020-11-04 |
| Efficient population modification gene-drive rescue system in the malaria mosquito Anopheles stephensi. | Adriana Adolfi, Valentino M Gantz, Nijole Jasinskiene, Hsu-Feng Lee, Kristy Hwang, Gerard Terradas, Emily A Bulger, Arunachalam Ramaiah, Jared B Bennett, J J Emerson, John M Marshall, Ethan Bier, Anthony A James | Nature Communications | 2020-11-03 |
| Discovery of novel secondary metabolites encoded in actinomycete genomes through coculture. | Ji Hun Kim, Namil Lee, Soonkyu Hwang, Woori Kim, Yongjae Lee, Suhyung Cho, Bernhard O Palsson, Byung-Kwan Cho | Journal Of Industrial Microbiology & Biotechnology | 2020-11-02 |
| Bacterial-fungal interactions revealed by genome-wide analysis of bacterial mutant fitness. | Emily C Pierce, Manon Morin, Jessica C Little, Roland B Liu, Joanna Tannous, Nancy P Keller, Kit Pogliano, Benjamin E Wolfe, Laura M Sanchez, Rachel J Dutton | Nature Microbiology | 2020-11-02 |
| High Prevalence of HIV-1 Drug Resistance and Dynamics of Transmission Among High-Risk Populations in Port-au-Prince, Haiti. | Frantz Jean Louis, Jean Wysler Domercant, Caroline Ignacio, Sara Gianella, Guethina Galbaud, Maureen Leonard, Davey M Smith, Antoine Chaillon | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2020-11-02 |
| Multiscale Simulations Examining Glycan Shield Effects on Drug Binding to Influenza Neuraminidase. | Christian Seitz, Lorenzo Casalino, Robert Konecny, Gary Huber, Rommie E Amaro, J Andrew McCammon | Biophysical Journal | 2020-10-31 |
| A cysteine protease inhibitor blocks SARS-CoV-2 infection of human and monkey cells. | Drake M Mellott, Chien-Te Tseng, Aleksandra Drelich, Pavla Fajtová, Bala C Chenna, Demetrios H Kostomiris, Jason Hsu, Jiyun Zhu, Zane W Taylor, Vivian Tat, Ardala Katzfuss, Linfeng Li, Miriam A Giardini, Danielle Skinner, Ken Hirata, Sungjun Beck, Aaron F Carlin, Alex E Clark, Laura Beretta, Daniel Maneval, Felix Frueh, Brett L Hurst, Hong Wang, Klaudia I Kocurek, Frank M Raushel, Anthony J O'Donoghue, Jair Lage de Siqueira-Neto, Thomas D Meek, James H McKerrow | BioRxiv : The Preprint Server For Biology | 2020-10-30 |
| Expanding magnetic organelle biogenesis in the domain Bacteria. | Wei Lin, Wensi Zhang, Greig A Paterson, Qiyun Zhu, Xiang Zhao, Rob Knight, Dennis A Bazylinski, Andrew P Roberts, Yongxin Pan | Microbiome | 2020-10-30 |
| Maintaining Patient Safety and Data Integrity of Nonalcoholic Steatohepatitis Clinical Trials During the Severe Acute Respiratory Syndrome-Coronavirus 2 Pandemic. | Naim Alkhouri, Anita Kohli, Rohit Loomba, Stephen A Harrison | Hepatology (Baltimore, Md.) | 2020-10-29 |
| Trajectories of Depressive Symptoms, Neurocognitive Function, and Viral Suppression With Antiretroviral Therapy Among Youth With HIV Over 36 months. | Jordan N Kohn, Matthew Shane Loop, Julie J Kim-Chang, Patricia A Garvie, John W Sleasman, Bernard Fischer, H Jonathon Rendina, Steven Paul Woods, Sharon L Nichols, Suzi Hong | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2020-10-28 |
| Exploration of Bacterial Bottlenecks and Streptococcus pneumoniae Pathogenesis by CRISPRi-Seq. | Xue Liu, Jacqueline M Kimmey, Laura Matarazzo, Vincent de Bakker, Laurye Van Maele, Jean-Claude Sirard, Victor Nizet, Jan-Willem Veening | Cell Host & Microbe | 2020-10-28 |
| RAAS Inhibitors and Risk of Covid-19. | Krishna Sriram, Rohit Loomba, Paul A Insel | The New England Journal Of Medicine | 2020-10-27 |
| Genetic elucidation of interconnected antibiotic pathways mediating maize innate immunity. | Yezhang Ding, Philipp R Weckwerth, Elly Poretsky, Katherine M Murphy, James Sims, Evan Saldivar, Shawn A Christensen, Si Nian Char, Bing Yang, Anh-Dao Tong, Zhouxin Shen, Karl A Kremling, Edward S Buckler, Tom Kono, David R Nelson, Jörg Bohlmann, Matthew G Bakker, Martha M Vaughan, Ahmed S Khalil, Mariam Betsiashvili, Keini Dressano, Tobias G Köllner, Steven P Briggs, Philipp Zerbe, Eric A Schmelz, Alisa Huffaker | Nature Plants | 2020-10-26 |
| Harmonising regulatory approval for antibiotics in children. | Phoebe C M Williams, John Bradley, Emmanuel Roilides, Linus Olson, Sheldon Kaplan, Irja Lutsar, Carlo Giaquinto, Daniel K Benjamin, Mike Sharland | The Lancet. Child & Adolescent Health | 2020-10-24 |
| Role of Carbon Monoxide in Host-Gut Microbiome Communication. | Christopher P Hopper, Ladie Kimberly De La Cruz, Kristin V Lyles, Lauren K Wareham, Jack A Gilbert, Zehava Eichenbaum, Marcin Magierowski, Robert K Poole, Jakob Wollborn, Binghe Wang | Chemical Reviews | 2020-10-22 |
| CAICE Studies: Insights from a Decade of Ocean-Atmosphere Experiments in the Laboratory. | Kathryn J Mayer, Jon S Sauer, Julie Dinasquet, Kimberly A Prather | Accounts Of Chemical Research | 2020-10-22 |
| Gut microbiome in Schizophrenia: Altered functional pathways related to immune modulation and atherosclerotic risk. | Tanya T Nguyen, Tomasz Kosciolek, Rebecca E Daly, Yoshiki Vázquez-Baeza, Austin Swafford, Rob Knight, Dilip V Jeste | Brain, Behavior, And Immunity | 2020-10-22 |
| Genetic Characterization of 89 Strains Isolated in Japan From 2011 to 2019. | Yujiro Hirose, Masaya Yamaguchi, Norihiko Takemoto, Tohru Miyoshi-Akiyama, Tomoko Sumitomo, Masanobu Nakata, Tadayoshi Ikebe, Tomoki Hanada, Takahiro Yamaguchi, Ryuji Kawahara, Rumi Okuno, Hitoshi Otsuka, Yuko Matsumoto, Yuji Terashima, Yu Kazawa, Noriko Nakanishi, Kaoru Uchida, Yumi Akiyama, Kaori Iwabuchi, Chikara Nakagawa, Kazunari Yamamoto, Victor Nizet, Shigetada Kawabata | Infectious Microbes & Diseases | 2020-10-21 |
| Systems biology analysis of the Clostridioides difficile core-genome contextualizes microenvironmental evolutionary pressures leading to genotypic and phenotypic divergence. | Charles J Norsigian, Heather A Danhof, Colleen K Brand, Numan Oezguen, Firas S Midani, Bernhard O Palsson, Tor C Savidge, Robert A Britton, Jennifer K Spinler, Jonathan M Monk | NPJ Systems Biology And Applications | 2020-10-20 |
| Introducing the Mangrove Microbiome Initiative: Identifying Microbial Research Priorities and Approaches To Better Understand, Protect, and Rehabilitate Mangrove Ecosystems. | Sarah M Allard, Matthew T Costa, Ashley N Bulseco, Véronique Helfer, Laetitia G E Wilkins, Christiane Hassenrück, Karsten Zengler, Martin Zimmer, Natalia Erazo, Jorge L Mazza Rodrigues, Norman Duke, Vânia M M Melo, Inka Vanwonterghem, Howard Junca, Huxley M Makonde, Diego Javier Jiménez, Tallita C L Tavares, Marco Fusi, Daniele Daffonchio, Carlos M Duarte, Raquel S Peixoto, Alexandre S Rosado, Jack A Gilbert, Jeff Bowman | MSystems | 2020-10-20 |
| Identifying the effect of vancomycin on health care-associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media. | Akanksha Rajput, Saugat Poudel, Hannah Tsunemoto, Michael Meehan, Richard Szubin, Connor A Olson, Yara Seif, Anne Lamsa, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M Monk, Pieter C Dorrestein, Rob Knight, Joe Pogliano, Victor Nizet, Adam M Feist, Bernhard O Palsson | GigaScience | 2020-10-20 |
| Dynamics and Dispersal of Local HIV Epidemics Within San Diego and Across The San Diego-Tijuana Border. | Bram Vrancken, Sanjay R Mehta, Santiago Ávila-Ríos, Claudia García-Morales, Daniela Tapia-Trejo, Gustavo Reyes-Terán, Samuel Navarro-Álvarez, Susan J Little, Martin Hoenigl, Heather A Pines, Thomas Patterson, Steffanie A Strathdee, Davey M Smith, Simon Dellicour, Antoine Chaillon | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2020-10-20 |
| Evaluation of IL-17D in Host Immunity to Group A Infection. | Allen Washington, Nissi Varki, J Andrés Valderrama, Victor Nizet, Jack D Bui | Journal Of Immunology (Baltimore, Md. : 1950) | 2020-10-19 |
| Expert Panel Review on Non-Alcoholic Fatty Liver Disease in Persons With HIV. | Jordan E Lake, Turner Overton, Susanna Naggie, Mark Sulkowski, Rohit Loomba, David E Kleiner, Jennifer C Price, Kara W Chew, Raymond T Chung, Kathleen E Corey | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2020-10-16 |
| Content and Performance of the MiniMUGA Genotyping Array: A New Tool To Improve Rigor and Reproducibility in Mouse Research. | John Sebastian Sigmon, Matthew W Blanchard, Ralph S Baric, Timothy A Bell, Jennifer Brennan, Gudrun A Brockmann, A Wesley Burks, J Mauro Calabrese, Kathleen M Caron, Richard E Cheney, Dominic Ciavatta, Frank Conlon, David B Darr, James Faber, Craig Franklin, Timothy R Gershon, Lisa Gralinski, Bin Gu, Christiann H Gaines, Robert S Hagan, Ernest G Heimsath, Mark T Heise, Pablo Hock, Folami Ideraabdullah, J Charles Jennette, Tal Kafri, Anwica Kashfeen, Mike Kulis, Vivek Kumar, Colton Linnertz, Alessandra Livraghi-Butrico, K C Kent Lloyd, Cathleen Lutz, Rachel M Lynch, Terry Magnuson, Glenn K Matsushima, Rachel McMullan, Darla R Miller, Karen L Mohlke, Sheryl S Moy, Caroline E Y Murphy, Maya Najarian, Lori O'Brien, Abraham A Palmer, Benjamin D Philpot, Scott H Randell, Laura Reinholdt, Yuyu Ren, Steve Rockwood, Allison R Rogala, Avani Saraswatula, Christopher M Sassetti, Jonathan C Schisler, Sarah A Schoenrock, Ginger D Shaw, John R Shorter, Clare M Smith, Celine L St Pierre, Lisa M Tarantino, David W Threadgill, William Valdar, Barbara J Vilen, Keegan Wardwell, Jason K Whitmire, Lucy Williams, Mark J Zylka, Martin T Ferris, Leonard McMillan, Fernando Pardo Manuel de Villena | Genetics | 2020-10-16 |
| A high-stringency blueprint of the human proteome. | Subash Adhikari, Edouard C Nice, Eric W Deutsch, Lydie Lane, Gilbert S Omenn, Stephen R Pennington, Young-Ki Paik, Christopher M Overall, Fernando J Corrales, Ileana M Cristea, Jennifer E Van Eyk, Mathias Uhlén, Cecilia Lindskog, Daniel W Chan, Amos Bairoch, James C Waddington, Joshua L Justice, Joshua LaBaer, Henry Rodriguez, Fuchu He, Markus Kostrzewa, Peipei Ping, Rebekah L Gundry, Peter Stewart, Sanjeeva Srivastava, Sudhir Srivastava, Fabio C S Nogueira, Gilberto B Domont, Yves Vandenbrouck, Maggie P Y Lam, Sara Wennersten, Juan Antonio Vizcaino, Marc Wilkins, Jochen M Schwenk, Emma Lundberg, Nuno Bandeira, Gyorgy Marko-Varga, Susan T Weintraub, Charles Pineau, Ulrike Kusebauch, Robert L Moritz, Seong Beom Ahn, Magnus Palmblad, Michael P Snyder, Ruedi Aebersold, Mark S Baker | Nature Communications | 2020-10-16 |
| Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. | David E Gordon, Joseph Hiatt, Mehdi Bouhaddou, Veronica V Rezelj, Svenja Ulferts, Hannes Braberg, Alexander S Jureka, Kirsten Obernier, Jeffrey Z Guo, Jyoti Batra, Robyn M Kaake, Andrew R Weckstein, Tristan W Owens, Meghna Gupta, Sergei Pourmal, Erron W Titus, Merve Cakir, Margaret Soucheray, Michael McGregor, Zeynep Cakir, Gwendolyn Jang, Matthew J O'Meara, Tia A Tummino, Ziyang Zhang, Helene Foussard, Ajda Rojc, Yuan Zhou, Dmitry Kuchenov, Ruth Hüttenhain, Jiewei Xu, Manon Eckhardt, Danielle L Swaney, Jacqueline M Fabius, Manisha Ummadi, Beril Tutuncuoglu, Ujjwal Rathore, Maya Modak, Paige Haas, Kelsey M Haas, Zun Zar Chi Naing, Ernst H Pulido, Ying Shi, Inigo Barrio-Hernandez, Danish Memon, Eirini Petsalaki, Alistair Dunham, Miguel Correa Marrero, David Burke, Cassandra Koh, Thomas Vallet, Jesus A Silvas, Caleigh M Azumaya, Christian Billesbølle, Axel F Brilot, Melody G Campbell, Amy Diallo, Miles Sasha Dickinson, Devan Diwanji, Nadia Herrera, Nick Hoppe, Huong T Kratochvil, Yanxin Liu, Gregory E Merz, Michelle Moritz, Henry C Nguyen, Carlos Nowotny, Cristina Puchades, Alexandrea N Rizo, Ursula Schulze-Gahmen, Amber M Smith, Ming Sun, Iris D Young, Jianhua Zhao, Daniel Asarnow, Justin Biel, Alisa Bowen, Julian R Braxton, Jen Chen, Cynthia M Chio, Un Seng Chio, Ishan Deshpande, Loan Doan, Bryan Faust, Sebastian Flores, Mingliang Jin, Kate Kim, Victor L Lam, Fei Li, Junrui Li, Yen-Li Li, Yang Li, Xi Liu, Megan Lo, Kyle E Lopez, Arthur A Melo, Frank R Moss, Phuong Nguyen, Joana Paulino, Komal Ishwar Pawar, Jessica K Peters, Thomas H Pospiech, Maliheh Safari, Smriti Sangwan, Kaitlin Schaefer, Paul V Thomas, Aye C Thwin, Raphael Trenker, Eric Tse, Tsz Kin Martin Tsui, Feng Wang, Natalie Whitis, Zanlin Yu, Kaihua Zhang, Yang Zhang, Fengbo Zhou, Daniel Saltzberg, , Anthony J Hodder, Amber S Shun-Shion, Daniel M Williams, Kris M White, Romel Rosales, Thomas Kehrer, Lisa Miorin, Elena Moreno, Arvind H Patel, Suzannah Rihn, Mir M Khalid, Albert Vallejo-Gracia, Parinaz Fozouni, Camille R Simoneau, Theodore L Roth, David Wu, Mohd Anisul Karim, Maya Ghoussaini, Ian Dunham, Francesco Berardi, Sebastian Weigang, Maxime Chazal, Jisoo Park, James Logue, Marisa McGrath, Stuart Weston, Robert Haupt, C James Hastie, Matthew Elliott, Fiona Brown, Kerry A Burness, Elaine Reid, Mark Dorward, Clare Johnson, Stuart G Wilkinson, Anna Geyer, Daniel M Giesel, Carla Baillie, Samantha Raggett, Hannah Leech, Rachel Toth, Nicola Goodman, Kathleen C Keough, Abigail L Lind, , Reyna J Klesh, Kafi R Hemphill, Jared Carlson-Stevermer, Jennifer Oki, Kevin Holden, Travis Maures, Katherine S Pollard, Andrej Sali, David A Agard, Yifan Cheng, James S Fraser, Adam Frost, Natalia Jura, Tanja Kortemme, Aashish Manglik, Daniel R Southworth, Robert M Stroud, Dario R Alessi, Paul Davies, Matthew B Frieman, Trey Ideker, Carmen Abate, Nolwenn Jouvenet, Georg Kochs, Brian Shoichet, Melanie Ott, Massimo Palmarini, Kevan M Shokat, Adolfo García-Sastre, Jeremy A Rassen, Robert Grosse, Oren S Rosenberg, Kliment A Verba, Christopher F Basler, Marco Vignuzzi, Andrew A Peden, Pedro Beltrao, Nevan J Krogan | Science (New York, N.Y.) | 2020-10-15 |
| Targeting the gut-liver-immune axis to treat cirrhosis. | Thomas Henry Tranah, Lindsey A Edwards, Bernd Schnabl, Debbie Lindsay Shawcross | Gut | 2020-10-15 |
| Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2020 Recommendations of the International Antiviral Society-USA Panel. | Michael S Saag, Rajesh T Gandhi, Jennifer F Hoy, Raphael J Landovitz, Melanie A Thompson, Paul E Sax, Davey M Smith, Constance A Benson, Susan P Buchbinder, Carlos Del Rio, Joseph J Eron, Gerd Fätkenheuer, Huldrych F Günthard, Jean-Michel Molina, Donna M Jacobsen, Paul A Volberding | JAMA | 2020-10-15 |
| Functional and Structural Insights into a Vif/PPP2R5 Complex Elucidated Using Patient HIV-1 Isolates and Computational Modeling. | Daniel J Salamango, Jennifer L McCann, Özlem Demir, Jordan T Becker, Jiayi Wang, Jairam R Lingappa, Nuri A Temiz, William L Brown, Rommie E Amaro, Reuben S Harris | Journal Of Virology | 2020-10-14 |
| TLR4 signaling and macrophage inflammatory responses are dampened by GIV/Girdin. | Lee Swanson, Gajanan D Katkar, Julian Tam, Rama F Pranadinata, Yogitha Chareddy, Jane Coates, Mahitha Shree Anandachar, Vanessa Castillo, Joshua Olson, Victor Nizet, Irina Kufareva, Soumita Das, Pradipta Ghosh | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-10-14 |
| Metabolites from Microbes Isolated from the Skin of the Panamanian Rocket Frog (Anura: Dendrobatidae). | Christian Martin H, Roberto Ibáñez, Louis-Félix Nothias, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein, Marcelino Gutiérrez | Metabolites | 2020-10-13 |
| Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV. | Bryn C Taylor, Kelly C Weldon, Ronald J Ellis, Donald Franklin, Daniel McDonald, Gregory Humphrey, MacKenzie Bryant, Julia Toronczak, Tara Schwartz, Jennifer Iudicello, Robert Heaton, Igor Grant, Sara Gianella, Scott Letendre, Austin Swafford, Pieter C Dorrestein, Rob Knight | MSystems | 2020-10-13 |
| Early-life gut dysbiosis linked to juvenile mortality in ostriches. | Elin Videvall, Se Jin Song, Hanna M Bensch, Maria Strandh, Anel Engelbrecht, Naomi Serfontein, Olof Hellgren, Adriaan Olivier, Schalk Cloete, Rob Knight, Charlie K Cornwallis | Microbiome | 2020-10-12 |
| Intestinal Virome in Patients With Alcoholic Hepatitis. | Lu Jiang, Sonja Lang, Yi Duan, Xinlian Zhang, Bei Gao, Jessica Chopyk, Leila K Schwanemann, Meritxell Ventura-Cots, Ramon Bataller, Francisco Bosques-Padilla, Elizabeth C Verna, Juan G Abraldes, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie L Shawcross, Samuel B Ho, Alexandre Louvet, Michael R Lucey, Philippe Mathurin, Guadalupe Garcia-Tsao, Tatiana Kisseleva, David A Brenner, Xin M Tu, Peter Stärkel, David Pride, Derrick E Fouts, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2020-10-10 |
| Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity. | Xin Fang, Yoshiki Vázquez-Baeza, Emmanuel Elijah, Fernando Vargas, Gail Ackermann, Gregory Humphrey, Rebecca Lau, Kelly C Weldon, Jon G Sanders, Morgan Panitchpakdi, Carolina Carpenter, Alan K Jarmusch, Jennifer Neill, Ara Miralles, Parambir Dulai, Siddharth Singh, Matthew Tsai, Austin D Swafford, Larry Smarr, David L Boyle, Bernhard O Palsson, John T Chang, Pieter C Dorrestein, William J Sandborn, Rob Knight, Brigid S Boland | Inflammatory Bowel Diseases | 2020-10-07 |
| Cross-reactive memory T cells and herd immunity to SARS-CoV-2. | Marc Lipsitch, Yonatan H Grad, Alessandro Sette, Shane Crotty | Nature Reviews. Immunology | 2020-10-06 |
| Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of Antibiotic. | Alison Vrbanac, Kathryn A Patras, Alan K Jarmusch, Robert H Mills, Samuel R Shing, Robert A Quinn, Fernando Vargas, David J Gonzalez, Pieter C Dorrestein, Rob Knight, Victor Nizet | MSystems | 2020-10-06 |
| Distinctive gene and protein characteristics of extremely piezophilic Colwellia. | Logan M Peoples, Than S Kyaw, Juan A Ugalde, Kelli K Mullane, Roger A Chastain, A Aristides Yayanos, Masataka Kusube, Barbara A Methé, Douglas H Bartlett | BMC Genomics | 2020-10-06 |
| Prophage exotoxins enhance colonization fitness in epidemic scarlet fever-causing Streptococcus pyogenes. | Stephan Brouwer, Timothy C Barnett, Diane Ly, Katherine J Kasper, David M P De Oliveira, Tania Rivera-Hernandez, Amanda J Cork, Liam McIntyre, Magnus G Jespersen, Johanna Richter, Benjamin L Schulz, Gordon Dougan, Victor Nizet, Kwok-Yung Yuen, Yuanhai You, John K McCormick, Martina L Sanderson-Smith, Mark R Davies, Mark J Walker | Nature Communications | 2020-10-06 |
| metaFlye: scalable long-read metagenome assembly using repeat graphs. | Mikhail Kolmogorov, Derek M Bickhart, Bahar Behsaz, Alexey Gurevich, Mikhail Rayko, Sung Bong Shin, Kristen Kuhn, Jeffrey Yuan, Evgeny Polevikov, Timothy P L Smith, Pavel A Pevzner | Nature Methods | 2020-10-05 |
| Airborne transmission of SARS-CoV-2. | Kimberly A Prather, Linsey C Marr, Robert T Schooley, Melissa A McDiarmid, Mary E Wilson, Donald K Milton | Science (New York, N.Y.) | 2020-10-05 |
| Cholesterol 25-Hydroxylase inhibits SARS-CoV-2 and other coronaviruses by depleting membrane cholesterol. | Shaobo Wang, Wanyu Li, Hui Hui, Shashi Kant Tiwari, Qiong Zhang, Ben A Croker, Stephen Rawlings, Davey Smith, Aaron F Carlin, Tariq M Rana | The EMBO Journal | 2020-10-05 |
| Fecal Microbiota Transplantation Is Highly Effective in Real-World Practice: Initial Results From the FMT National Registry. | Colleen R Kelly, Eugene F Yen, Ari M Grinspan, Stacy A Kahn, Ashish Atreja, James D Lewis, Thomas A Moore, David T Rubin, Alison M Kim, Sonya Serra, Yanina Nersesova, Lydia Fredell, Dea Hunsicker, Daniel McDonald, Rob Knight, Jessica R Allegretti, Joel Pekow, Imad Absah, Ronald Hsu, Jennifer Vincent, Sahil Khanna, Lyn Tangen, Carl V Crawford, Mark C Mattar, Lea Ann Chen, Monika Fischer, Razvan I Arsenescu, Paul Feuerstadt, Jonathan Goldstein, David Kerman, Adam C Ehrlich, Gary D Wu, Loren Laine | Gastroenterology | 2020-10-01 |
| Transcriptomic Analysis Reveals Common Adaptation Mechanisms Under Different Stresses for Moderately Piezophilic Bacteria. | Han Wang, Yu Zhang, Douglas H Bartlett, Xiang Xiao | Microbial Ecology | 2020-09-30 |
| A Distinct Microbiome Signature in Posttreatment Lyme Disease Patients. | Madeleine Morrissette, Norman Pitt, Antonio González, Philip Strandwitz, Mariaelena Caboni, Alison W Rebman, Rob Knight, Anthony D'Onofrio, John N Aucott, Mark J Soloski, Kim Lewis | MBio | 2020-09-29 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Journal Of Virology | 2020-09-29 |
| Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome. | Bryn C Taylor, Kelly C Weldon, Ronald J Ellis, Donald Franklin, Tobin Groth, Emily C Gentry, Anupriya Tripathi, Daniel McDonald, Gregory Humphrey, MacKenzie Bryant, Julia Toronczak, Tara Schwartz, Michelli F Oliveira, Robert Heaton, Igor Grant, Sara Gianella, Scott Letendre, Austin Swafford, Pieter C Dorrestein, Rob Knight | MSystems | 2020-09-29 |
| Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans. | Connie W Y Ha, Anthony Martin, Gregory D Sepich-Poore, Baochen Shi, Yizhou Wang, Kenneth Gouin, Gregory Humphrey, Karenina Sanders, Yasiru Ratnayake, Kelvin S L Chan, Gustaf Hendrick, J R Caldera, Christian Arias, Jacob E Moskowitz, Shannan J Ho Sui, Shaohong Yang, David Underhill, Matthew J Brady, Simon Knott, Kelly Kaihara, Michael J Steinbaugh, Huiying Li, Dermot P B McGovern, Rob Knight, Phillip Fleshner, Suzanne Devkota | Cell | 2020-09-28 |
| Androsamide, a Cyclic Tetrapeptide from a Marine sp., Suppresses Motility of Colorectal Cancer Cells. | Jihye Lee, Chathurika D B Gamage, Geum Jin Kim, Prima F Hillman, Chaeyoung Lee, Eun Young Lee, Hyukjae Choi, Hangun Kim, Sang-Jip Nam, William Fenical | Journal Of Natural Products | 2020-09-28 |
| Optimal Threshold of Controlled Attenuation Parameter for Detection of HIV-Associated NAFLD With Magnetic Resonance Imaging as the Reference Standard. | Veeral H Ajmera, Edward R Cachay, Christian B Ramers, Shirin Bassirian, Seema Singh, Richele Bettencourt, Lisa Richards, Gavin Hamilton, Michael Middleton, Katie Fowler, Claude Sirlin, Rohit Loomba | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2020-09-25 |
| Yeast homologs of human MCUR1 regulate mitochondrial proline metabolism. | Mohammad Zulkifli, John K Neff, Shrishiv A Timbalia, Natalie M Garza, Yingqi Chen, Jeramie D Watrous, Marta Murgia, Prachi P Trivedi, Steven K Anderson, Dhanendra Tomar, Roland Nilsson, Muniswamy Madesh, Mohit Jain, Vishal M Gohil | Nature Communications | 2020-09-25 |
| Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut microbiota. | Anton Lavrinienko, Eugene Tukalenko, Timothy A Mousseau, Luke R Thompson, Rob Knight, Tapio Mappes, Phillip C Watts | Scientific Data | 2020-09-23 |
| Nutrition and the Gut Microbiota in 10- to 18-Month-Old Children Living in Urban Slums of Mumbai, India. | Samantha L Huey, Lingjing Jiang, Marcus W Fedarko, Daniel McDonald, Cameron Martino, Farhana Ali, David G Russell, Shobha A Udipi, Aparna Thorat, Varsha Thakker, Padmini Ghugre, R D Potdar, Harsha Chopra, Kripa Rajagopalan, Jere D Haas, Julia L Finkelstein, Rob Knight, Saurabh Mehta | MSphere | 2020-09-23 |
| Cross-reactive serum and memory B cell responses to spike protein in SARS-CoV-2 and endemic coronavirus infection. | Ge Song, Wan-Ting He, Sean Callaghan, Fabio Anzanello, Deli Huang, James Ricketts, Jonathan L Torres, Nathan Beutler, Linghang Peng, Sirena Vargas, Jon Cassell, Mara Parren, Linlin Yang, Caroline Ignacio, Davey M Smith, James E Voss, David Nemazee, Andrew B Ward, Thomas Rogers, Dennis R Burton, Raiees Andrabi | BioRxiv : The Preprint Server For Biology | 2020-09-23 |
| The Bitome: digitized genomic features reveal fundamental genome organization. | Cameron R Lamoureux, Kumari Sonal Choudhary, Zachary A King, Troy E Sandberg, Ye Gao, Anand V Sastry, Patrick V Phaneuf, Donghui Choe, Byung-Kwan Cho, Bernhard O Palsson | Nucleic Acids Research | 2020-09-23 |
| The Pseudomonas aeruginosa protease LasB directly activates IL-1β. | Josh Sun, Doris L LaRock, Elaine A Skowronski, Jacqueline M Kimmey, Joshua Olson, Zhenze Jiang, Anthony J O'Donoghue, Victor Nizet, Christopher N LaRock | EBioMedicine | 2020-09-23 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Journal Of Clinical Microbiology | 2020-09-22 |
| CD8 T cells drive anorexia, dysbiosis, and blooms of a commensal with immunosuppressive potential after viral infection. | Lara Labarta-Bajo, Anna Gramalla-Schmitz, Romana R Gerner, Katelynn R Kazane, Gregory Humphrey, Tara Schwartz, Karenina Sanders, Austin Swafford, Rob Knight, Manuela Raffatellu, Elina I Zúñiga | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-09-21 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Antimicrobial Agents And Chemotherapy | 2020-09-21 |
| Reconstructing organisms in silico: genome-scale models and their emerging applications. | Xin Fang, Colton J Lloyd, Bernhard O Palsson | Nature Reviews. Microbiology | 2020-09-21 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Infection And Immunity | 2020-09-18 |
| Antigen-Specific Adaptive Immunity to SARS-CoV-2 in Acute COVID-19 and Associations with Age and Disease Severity. | Carolyn Rydyznski Moderbacher, Sydney I Ramirez, Jennifer M Dan, Alba Grifoni, Kathryn M Hastie, Daniela Weiskopf, Simon Belanger, Robert K Abbott, Christina Kim, Jinyong Choi, Yu Kato, Eleanor G Crotty, Cheryl Kim, Stephen A Rawlings, Jose Mateus, Long Ping Victor Tse, April Frazier, Ralph Baric, Bjoern Peters, Jason Greenbaum, Erica Ollmann Saphire, Davey M Smith, Alessandro Sette, Shane Crotty | Cell | 2020-09-16 |
| Biomolecular Simulations in the Time of COVID19, and After. | Rommie E Amaro, Adrian J Mulholland | Computing In Science & Engineering | 2020-09-15 |
| iModulonDB: a knowledgebase of microbial transcriptional regulation derived from machine learning. | Kevin Rychel, Katherine Decker, Anand V Sastry, Patrick V Phaneuf, Saugat Poudel, Bernhard O Palsson | Nucleic Acids Research | 2020-09-15 |
| HIV Care Prioritization Using Phylogenetic Branch Length. | Niema Moshiri, Davey M Smith, Siavash Mirarab | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2020-09-14 |
| MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets. | Meena Choi, Jeremy Carver, Cristina Chiva, Manuel Tzouros, Ting Huang, Tsung-Heng Tsai, Benjamin Pullman, Oliver M Bernhardt, Ruth Hüttenhain, Guo Ci Teo, Yasset Perez-Riverol, Jan Muntel, Maik Müller, Sandra Goetze, Maria Pavlou, Erik Verschueren, Bernd Wollscheid, Alexey I Nesvizhskii, Lukas Reiter, Tom Dunkley, Eduard Sabidó, Nuno Bandeira, Olga Vitek | Nature Methods | 2020-09-14 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Molecular And Cellular Biology | 2020-09-14 |
| Genetic examination of the marine bacterium Pseudoalteromonas luteoviolacea and effects of its metamorphosis-inducing factors. | Amanda T Alker, Nathalie Delherbe, Trevor N Purdy, Bradley S Moore, Nicholas J Shikuma | Environmental Microbiology | 2020-09-13 |
| Shining Light on the COVID-19 Pandemic: A Vitamin D Receptor Checkpoint in Defense of Unregulated Wound Healing. | Ronald M Evans, Scott M Lippman | Cell Metabolism | 2020-09-11 |
| From intestinal dysbiosis to alcohol-associated liver disease. | Beatriz Garcia Mendes, Bernd Schnabl | Clinical And Molecular Hepatology | 2020-09-11 |
| Complementary Genomic, Bioinformatics, and Chemical Approaches Facilitate the Absolute Structure Assignment of Ionostatin, a Linear Polyketide from a Rare Marine-Derived Actinomycete. | Min Cheol Kim, Jaclyn M Winter, Reiko Cullum, Zhifei Li, William Fenical | ACS Chemical Biology | 2020-09-09 |
| The microbiota in cirrhosis and its role in hepatic decompensation. | Jonel Trebicka, Jane Macnaughtan, Bernd Schnabl, Debbie L Shawcross, Jasmohan S Bajaj | Journal Of Hepatology | 2020-09-08 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Journal Of Bacteriology | 2020-09-08 |
| Restoration of fitness lost due to dysregulation of the pyruvate dehydrogenase complex is triggered by ribosomal binding site modifications. | Amitesh Anand, Connor A Olson, Anand V Sastry, Arjun Patel, Richard Szubin, Laurence Yang, Adam M Feist, Bernhard O Palsson | Cell Reports | 2020-09-08 |
| Recommendations for measuring HIV reservoir size in cure-directed clinical trials. | Mohamed Abdel-Mohsen, Douglas Richman, Robert F Siliciano, Michel C Nussenzweig, Bonnie J Howell, Javier Martinez-Picado, Nicolas Chomont, Katharine J Bar, Xu G Yu, Mathias Lichterfeld, Jose Alcami, Daria Hazuda, Frederic Bushman, Janet D Siliciano, Michael R Betts, Adam M Spivak, Vicente Planelles, Beatrice H Hahn, Davey M Smith, Ya-Chi Ho, Maria J Buzon, Christian Gaebler, Mirko Paiardini, Qingsheng Li, Jacob D Estes, Thomas J Hope, Jay Kostman, Karam Mounzer, Marina Caskey, Lawrence Fox, Ian Frank, James L Riley, Pablo Tebas, Luis J Montaner, | Nature Medicine | 2020-09-07 |
| Lactose-reduced infant formula with added corn syrup solids is associated with a distinct gut microbiota in Hispanic infants. | Roshonda B Jones, Paige K Berger, Jasmine F Plows, Tanya L Alderete, Joshua Millstein, Jennifer Fogel, Stanislav N Iablokov, Dmitry A Rodionov, Andrei L Osterman, Lars Bode, Michael I Goran | Gut Microbes | 2020-09-05 |
| ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy. | Chao Zhang, Celine Scornavacca, Erin K Molloy, Siavash Mirarab | Molecular Biology And Evolution | 2020-09-05 |
| Both HIV and Tat expression decrease prepulse inhibition with further impairment by methamphetamine. | T Jordan Walter, Jared W Young, Morgane Milienne-Petiot, D S Deben, Robert K Heaton, Scott Letendre, David J Grelotti, William Perry, Igor Grant, Arpi Minassian, | Progress In Neuro-psychopharmacology & Biological Psychiatry | 2020-09-04 |
| Lactobacillus commensals autochthonous to human milk have the hallmarks of potent probiotics. | Jasia Anjum, Shahid Nazir, Muhammad Tariq, Kim Barrett, Arsalan Zaidi | Microbiology (Reading, England) | 2020-09-04 |
| Cost-effectiveness analysis of pre-exposure prophylaxis for the prevention of HIV in men who have sex with men in South Korea: a mathematical modelling study. | Heun Choi, Jiyeon Suh, Woonji Lee, Jun Hyoung Kim, Jung Ho Kim, Hye Seong, Jin Young Ahn, Su Jin Jeong, Nam Su Ku, Yoon Soo Park, Joon Sup Yeom, Changsoo Kim, Hee-Dae Kwon, Davey M Smith, Jeehyun Lee, Jun Yong Choi | Scientific Reports | 2020-09-03 |
| Genome Mining, Microbial Interactions, and Molecular Networking Reveals New Dibromoalterochromides from Strains of of Coiba National Park-Panama. | Librada A Atencio, Cristopher A Boya P, Christian Martin H, Luis C Mejía, Pieter C Dorrestein, Marcelino Gutiérrez | Marine Drugs | 2020-09-03 |
| Suppression of local type I interferon by gut microbiota-derived butyrate impairs antitumor effects of ionizing radiation. | Kaiting Yang, Yuzhu Hou, Yuan Zhang, Hua Liang, Anukriti Sharma, Wenxin Zheng, Liangliang Wang, Rolando Torres, Ken Tatebe, Steven J Chmura, Sean P Pitroda, Jack A Gilbert, Yang-Xin Fu, Ralph R Weichselbaum | The Journal Of Experimental Medicine | 2020-09-03 |
| Genome-Wide Dynamic Evaluation of the UV-Induced DNA Damage Response. | Erica Silva, Manuel Michaca, Brenton Munson, Gordon J Bean, Philipp A Jaeger, Katherine Licon, Elizabeth A Winzeler, Trey Ideker | G3 (Bethesda, Md.) | 2020-09-02 |
| Chemical composition of material extractives influences microbial growth and dynamics on wetted wood materials. | Dan Zhao, Cesar Cardona, Neil Gottel, Valerie J Winton, Paul M Thomas, Daniel A Raba, Scott T Kelley, Christopher Henry, Jack A Gilbert, Brent Stephens | Scientific Reports | 2020-09-02 |
| Loneliness Versus Wisdom Amid Two Concurrent Pandemics of Loneliness. | Dilip V Jeste, Ellen E Lee | The American Journal Of Geriatric Psychiatry : Official Journal Of The American Association For Geriatric Psychiatry | 2020-09-02 |
| Discovery and Verification of Extracellular miRNA Biomarkers for Non-invasive Prediction of Pre-eclampsia in Asymptomatic Women. | Srimeenakshi Srinivasan, Ryan Treacy, Tiffany Herrero, Richelle Olsen, Trevor R Leonardo, Xuan Zhang, Peter DeHoff, Cuong To, Lara G Poling, Aileen Fernando, Sandra Leon-Garcia, Katharine Knepper, Vy Tran, Morgan Meads, Jennifer Tasarz, Aishwarya Vuppala, Soojin Park, Clara D Laurent, Tony Bui, Pike See Cheah, Rachael Tabitha Overcash, Gladys A Ramos, Hilary Roeder, Ionita Ghiran, Mana Parast, , Xandra O Breakefield, Amir J Lueth, Sharon R Rust, Max T Dufford, Angela C Fox, Durlin E Hickok, Julja Burchard, J Jay Boniface, Louise C Laurent | Cell Reports. Medicine | 2020-09-01 |
| B cells expressing authentic naive human VRC01-class BCRs can be recruited to germinal centers and affinity mature in multiple independent mouse models. | Deli Huang, Robert K Abbott, Colin Havenar-Daughton, Patrick D Skog, Rita Al-Kolla, Bettina Groschel, Tanya R Blane, Sergey Menis, Jenny Tuyet Tran, Theresa C Thinnes, Sabrina A Volpi, Alessia Liguori, Torben Schiffner, Sophia M Villegas, Oleksandr Kalyuzhniy, Mark Pintea, James E Voss, Nicole Phelps, Ryan Tingle, Alberto R Rodriguez, Greg Martin, Sergey Kupryianov, Allan deCamp, William R Schief, David Nemazee, Shane Crotty | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-09-01 |
| Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers. | David Heckmann, Anaamika Campeau, Colton J Lloyd, Patrick V Phaneuf, Ying Hefner, Marvic Carrillo-Terrazas, Adam M Feist, David J Gonzalez, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-09-01 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Applied And Environmental Microbiology | 2020-09-01 |
| Iron at the host-microbe interface. | Romana R Gerner, Sean-Paul Nuccio, Manuela Raffatellu | Molecular Aspects Of Medicine | 2020-09-01 |
| Context-aware dimensionality reduction deconvolutes gut microbial community dynamics. | Cameron Martino, Liat Shenhav, Clarisse A Marotz, George Armstrong, Daniel McDonald, Yoshiki Vázquez-Baeza, James T Morton, Lingjing Jiang, Maria Gloria Dominguez-Bello, Austin D Swafford, Eran Halperin, Rob Knight | Nature Biotechnology | 2020-08-31 |
| Exercise Training Reverses Gut Dysbiosis in Patients With Biopsy-Proven Nonalcoholic Steatohepatitis: A Proof of Concept Study. | Alexa Hughes, Jessica Dahmus, Gloriany Rivas, Breianna Hummer, Jeremy R Chen See, Justin R Wright, Regina Lamendella, Kathryn H Schmitz, Christopher Sciamanna, Mack Ruffin, Andrew D Patterson, Rohit Loomba, Jonathan G Stine | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2020-08-31 |
| A case of mistaken identity: of the orbit. | Allison J Chen, Lilangi S Ediriwickrema, Rohan Verma, Vera Vavinskaya, Solomon Shaftel, Adam S Deconde, Bobby S Korn, Don O Kikkawa, Catherine Y Liu | Orbit (Amsterdam, Netherlands) | 2020-08-30 |
| Quantitative profiling of built environment bacterial and fungal communities reveals dynamic material dependent growth patterns and microbial interactions. | Ying Xu, Ruby Tandon, Chrislyn Ancheta, Pablo Arroyo, Jack A Gilbert, Brent Stephens, Scott T Kelley | Indoor Air | 2020-08-28 |
| Multifaceted Effects of Antigen Valency on B Cell Response Composition and Differentiation In Vivo. | Yu Kato, Robert K Abbott, Brian L Freeman, Sonya Haupt, Bettina Groschel, Murillo Silva, Sergey Menis, Darrell J Irvine, William R Schief, Shane Crotty | Immunity | 2020-08-27 |
| Association of Body Mass Index with Fecal Microbial Diversity and Metabolites in the Northern Finland Birth Cohort. | Erikka Loftfield, Karl-Heinz Herzig, J Gregory Caporaso, Andriy Derkach, Yunhu Wan, Doratha A Byrd, Emily Vogtmann, Minna Männikkö, Ville Karhunen, Rob Knight, Marc J Gunter, Marjo-Riitta Järvelin, Rashmi Sinha | Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology | 2020-08-27 |
| HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers. | Shuling Ren, Daria A Gaykalova, Theresa Guo, Alexander V Favorov, Elana J Fertig, Pablo Tamayo, Juan Luis Callejas-Valera, Mike Allevato, Mara Gilardi, Jessica Santos, Takahito Fukusumi, Akihiro Sakai, Mizuo Ando, Sayed Sadat, Chao Liu, Guorong Xu, Kathleen M Fisch, Zhiyong Wang, Alfredo A Molinolo, J Silvio Gutkind, Trey Ideker, Wayne M Koch, Joseph A Califano | Oncogene | 2020-08-26 |
| Multidimensional Proteome Profiling of Blood-Brain Barrier Perturbation by Group B . | Anaamika Campeau, Robert H Mills, Marie Blanchette, Kaja Bajc, Mario Malfavon, Roeben N Munji, Liwen Deng, Bryan Hancock, Kathryn A Patras, Joshua Olson, Victor Nizet, Richard Daneman, Kelly Doran, David J Gonzalez | MSystems | 2020-08-25 |
| Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy. | Andrew Oliver, Brandon LaMere, Claudia Weihe, Stephen Wandro, Karen L Lindsay, Pathik D Wadhwa, David A Mills, David T Pride, Oliver Fiehn, Trent Northen, Markus de Raad, Huiying Li, Jennifer B H Martiny, Susan Lynch, Katrine Whiteson | MBio | 2020-08-25 |
| The Southern Bluefin Tuna Mucosal Microbiome Is Influenced by Husbandry Method, Net Pen Location, and Anti-parasite Treatment. | Jeremiah J Minich, Cecilia Power, Michaela Melanson, Rob Knight, Claire Webber, Kirsten Rough, Nathan J Bott, Barbara Nowak, Eric E Allen | Frontiers In Microbiology | 2020-08-24 |
| Fructose stimulated de novo lipogenesis is promoted by inflammation. | Jelena Todoric, Giuseppe Di Caro, Saskia Reibe, Darren C Henstridge, Courtney R Green, Alison Vrbanac, Fatih Ceteci, Claire Conche, Reginald McNulty, Shabnam Shalapour, Koji Taniguchi, Peter J Meikle, Jeramie D Watrous, Rafael Moranchel, Mahan Najhawan, Mohit Jain, Xiao Liu, Tatiana Kisseleva, Maria T Diaz-Meco, Jorge Moscat, Rob Knight, Florian R Greten, Lester F Lau, Christian M Metallo, Mark A Febbraio, Michael Karin | Nature Metabolism | 2020-08-24 |
| Feature-based molecular networking in the GNPS analysis environment. | Louis-Félix Nothias, Daniel Petras, Robin Schmid, Kai Dührkop, Johannes Rainer, Abinesh Sarvepalli, Ivan Protsyuk, Madeleine Ernst, Hiroshi Tsugawa, Markus Fleischauer, Fabian Aicheler, Alexander A Aksenov, Oliver Alka, Pierre-Marie Allard, Aiko Barsch, Xavier Cachet, Andres Mauricio Caraballo-Rodriguez, Ricardo R Da Silva, Tam Dang, Neha Garg, Julia M Gauglitz, Alexey Gurevich, Giorgis Isaac, Alan K Jarmusch, Zdeněk Kameník, Kyo Bin Kang, Nikolas Kessler, Irina Koester, Ansgar Korf, Audrey Le Gouellec, Marcus Ludwig, Christian Martin H, Laura-Isobel McCall, Jonathan McSayles, Sven W Meyer, Hosein Mohimani, Mustafa Morsy, Oriane Moyne, Steffen Neumann, Heiko Neuweger, Ngoc Hung Nguyen, Melissa Nothias-Esposito, Julien Paolini, Vanessa V Phelan, Tomáš Pluskal, Robert A Quinn, Simon Rogers, Bindesh Shrestha, Anupriya Tripathi, Justin J J van der Hooft, Fernando Vargas, Kelly C Weldon, Michael Witting, Heejung Yang, Zheng Zhang, Florian Zubeil, Oliver Kohlbacher, Sebastian Böcker, Theodore Alexandrov, Nuno Bandeira, Mingxun Wang, Pieter C Dorrestein | Nature Methods | 2020-08-24 |
| Evaluation for SARS-CoV-2 in Breast Milk From 18 Infected Women. | Christina Chambers, Paul Krogstad, Kerri Bertrand, Deisy Contreras, Nicole H Tobin, Lars Bode, Grace Aldrovandi | JAMA | 2020-08-22 |
| Sustained attention and vigilance deficits associated with HIV and a history of methamphetamine dependence. | Nina Pocuca, Jared W Young, David A MacQueen, Scott Letendre, Robert K Heaton, Mark A Geyer, William Perry, Igor Grant, Arpi Minassian, | Drug And Alcohol Dependence | 2020-08-22 |
| Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates. | Joana Damas, Graham M Hughes, Kathleen C Keough, Corrie A Painter, Nicole S Persky, Marco Corbo, Michael Hiller, Klaus-Peter Koepfli, Andreas R Pfenning, Huabin Zhao, Diane P Genereux, Ross Swofford, Katherine S Pollard, Oliver A Ryder, Martin T Nweeia, Kerstin Lindblad-Toh, Emma C Teeling, Elinor K Karlsson, Harris A Lewin | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-08-21 |
| Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. | Jeremiah Minich, Farhana Ali, Clarisse Marotz, Pedro Belda-Ferre, Leslie Chiang, Justin P Shaffer, Carolina S Carpenter, Daniel McDonald, Jack Gilbert, Sarah M Allard, Eric E Allen, Rob Knight, Daniel A Sweeney, Austin D Swafford | Research Square | 2020-08-18 |
| Microbe-Metabolite Associations Linked to the Rebounding Murine Gut Microbiome Postcolonization with Vancomycin-Resistant Enterococcus faecium. | Andre Mu, Glen P Carter, Lucy Li, Nicole S Isles, Alison F Vrbanac, James T Morton, Alan K Jarmusch, David P De Souza, Vinod K Narayana, Komal Kanojia, Brunda Nijagal, Malcolm J McConville, Rob Knight, Benjamin P Howden, Timothy P Stinear | MSystems | 2020-08-18 |
| N-glycolyl chondroitin synthesis using metabolically engineered E. coli. | Adeola E Awofiranye, Sultan N Baytas, Ke Xia, Abinaya Badri, Wenqin He, Ajit Varki, Mattheos Koffas, Robert J Linhardt | AMB Express | 2020-08-17 |
| ReDU: a framework to find and reanalyze public mass spectrometry data. | Alan K Jarmusch, Mingxun Wang, Christine M Aceves, Rohit S Advani, Shaden Aguirre, Alexander A Aksenov, Gajender Aleti, Allegra T Aron, Anelize Bauermeister, Sanjana Bolleddu, Amina Bouslimani, Andres Mauricio Caraballo Rodriguez, Rama Chaar, Roxana Coras, Emmanuel O Elijah, Madeleine Ernst, Julia M Gauglitz, Emily C Gentry, Makhai Husband, Scott A Jarmusch, Kenneth L Jones, Zdenek Kamenik, Audrey Le Gouellec, Aileen Lu, Laura-Isobel McCall, Kerry L McPhail, Michael J Meehan, Alexey V Melnik, Riya C Menezes, Yessica Alejandra Montoya Giraldo, Ngoc Hung Nguyen, Louis Felix Nothias, Mélissa Nothias-Esposito, Morgan Panitchpakdi, Daniel Petras, Robert A Quinn, Nicole Sikora, Justin J J van der Hooft, Fernando Vargas, Alison Vrbanac, Kelly C Weldon, Rob Knight, Nuno Bandeira, Pieter C Dorrestein | Nature Methods | 2020-08-17 |
| Ur-ine Old Age: Urinary Microbiome of Older Community Dwelling Women. | Alan J Wolfe, Linda Brubaker | Cell Host & Microbe | 2020-08-14 |
| Vaginal estrogen therapy is associated with increased Lactobacillus in the urine of postmenopausal women with overactive bladder symptoms. | Krystal Thomas-White, Susanne Taege, Roberto Limeira, Cynthia Brincat, Cara Joyce, Evann E Hilt, Laura Mac-Daniel, Katherine A Radek, Linda Brubaker, Elizabeth R Mueller, Alan J Wolfe | American Journal Of Obstetrics And Gynecology | 2020-08-11 |
| Genome-Scale Metabolic Model of pv. : An Approach to Elucidate Pathogenicity at the Metabolic Level. | David Botero, Jonathan Monk, María Juliana Rodríguez Cubillos, Andrés Rodríguez Cubillos, Mariana Restrepo, Vivian Bernal-Galeano, Alejandro Reyes, Andrés González Barrios, Bernhard Ø Palsson, Silvia Restrepo, Adriana Bernal | Frontiers In Genetics | 2020-08-11 |
| System-level understanding of gene expression and regulation for engineering secondary metabolite production in Streptomyces. | Yongjae Lee, Namil Lee, Soonkyu Hwang, Kangsan Kim, Woori Kim, Jihun Kim, Suhyung Cho, Bernhard O Palsson, Byung-Kwan Cho | Journal Of Industrial Microbiology & Biotechnology | 2020-08-10 |
| Synthetic cross-phyla gene replacement and evolutionary assimilation of major enzymes. | Troy E Sandberg, Richard Szubin, Patrick V Phaneuf, Bernhard O Palsson | Nature Ecology & Evolution | 2020-08-10 |
| No Evidence of SARS-CoV-2 Seminal Shedding Despite SARS-CoV-2 Persistence in the Upper Respiratory Tract. | Stephen A Rawlings, Caroline Ignacio, Magali Porrachia, Pinyi Du, Davey M Smith, Antoine Chaillon | Open Forum Infectious Diseases | 2020-08-07 |
| Active Microneedle Administration of Plant Virus Nanoparticles for Cancer Vaccination Improves Immunotherapeutic Efficacy. | Christine E Boone, Chao Wang, Miguel Angel Lopez-Ramirez, Veronique Beiss, Sourabh Shukla, Paul L Chariou, Daniel Kupor, Ricardo Rueda, Joseph Wang, Nicole F Steinmetz | ACS Applied Nano Materials | 2020-08-07 |
| Targeting HIV Env immunogens to B cell follicles in nonhuman primates through immune complex or protein nanoparticle formulations. | Jacob T Martin, Christopher A Cottrell, Aleksandar Antanasijevic, Diane G Carnathan, Benjamin J Cossette, Chiamaka A Enemuo, Etse H Gebru, Yury Choe, Federico Viviano, Stephanie Fischinger, Talar Tokatlian, Kimberly M Cirelli, George Ueda, Jeffrey Copps, Torben Schiffner, Sergey Menis, Galit Alter, William R Schief, Shane Crotty, Neil P King, David Baker, Guido Silvestri, Andrew B Ward, Darrell J Irvine | NPJ Vaccines | 2020-08-05 |
| Targeting HIV Env immunogens to B cell follicles in nonhuman primates through immune complex or protein nanoparticle formulations. | Jacob T Martin, Christopher A Cottrell, Aleksandar Antanasijevic, Diane G Carnathan, Benjamin J Cossette, Chiamaka A Enemuo, Etse H Gebru, Yury Choe, Federico Viviano, Stephanie Fischinger, Talar Tokatlian, Kimberly M Cirelli, George Ueda, Jeffrey Copps, Torben Schiffner, Sergey Menis, Galit Alter, William R Schief, Shane Crotty, Neil P King, David Baker, Guido Silvestri, Andrew B Ward, Darrell J Irvine | NPJ Vaccines | 2020-08-05 |
| Cutaneous innate immune tolerance is mediated by epigenetic control of MAP2K3 by HDAC8/9. | Yu Sawada, Teruaki Nakatsuji, Tatsuya Dokoshi, Nikhil Nitin Kulkarni, Marc C Liggins, George Sen, Richard L Gallo | Science Immunology | 2020-08-05 |
| Selective and cross-reactive SARS-CoV-2 T cell epitopes in unexposed humans. | Jose Mateus, Alba Grifoni, Alison Tarke, John Sidney, Sydney I Ramirez, Jennifer M Dan, Zoe C Burger, Stephen A Rawlings, Davey M Smith, Elizabeth Phillips, Simon Mallal, Marshall Lammers, Paul Rubiro, Lorenzo Quiambao, Aaron Sutherland, Esther Dawen Yu, Ricardo da Silva Antunes, Jason Greenbaum, April Frazier, Alena J Markmann, Lakshmanane Premkumar, Aravinda de Silva, Bjoern Peters, Shane Crotty, Alessandro Sette, Daniela Weiskopf | Science (New York, N.Y.) | 2020-08-04 |
| Linking metabolic phenotypes to pathogenic traits among "Candidatus Liberibacter asiaticus" and its hosts. | Cristal Zuñiga, Beth Peacock, Bo Liang, Greg McCollum, Sonia C Irigoyen, Diego Tec-Campos, Clarisse Marotz, Nien-Chen Weng, Alejandro Zepeda, Georgios Vidalakis, Kranthi K Mandadi, James Borneman, Karsten Zengler | NPJ Systems Biology And Applications | 2020-08-04 |
| Deficiency of Intestinal α1-2-Fucosylation Exacerbates Ethanol-Induced Liver Disease in Mice. | Rongrong Zhou, Cristina Llorente, Jinling Cao, Bei Gao, Yi Duan, Lu Jiang, Yanhan Wang, Vipin Kumar, Peter Stärkel, Lars Bode, Xuegong Fan, Bernd Schnabl | Alcoholism, Clinical And Experimental Research | 2020-08-02 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Microbiology Spectrum | 2020-08-02 |
| Women Physicians and the COVID-19 Pandemic. | Linda Brubaker | JAMA | 2020-08-01 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Journal Of Microbiology & Biology Education | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | MSystems | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | MSphere | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Microbiology And Molecular Biology Reviews : MMBR | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | MBio | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Microbiology Resource Announcements | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Clinical Microbiology Reviews | 2020-07-31 |
| Association of HIV serostatus and metabolic syndrome with neurobehavioral disturbances. | Caitlin N Pope, Jessica L Montoya, Elizabeth Vasquez, Josué Pérez-Santiago, Ronald Ellis, J Allen McCutchan, Dilip V Jeste, David J Moore, María J Marquine | Journal Of Neurovirology | 2020-07-30 |
| Synthetic microbial communities of heterotrophs and phototrophs facilitate sustainable growth. | Cristal Zuñiga, Tingting Li, Michael T Guarnieri, Jackson P Jenkins, Chien-Ting Li, Kerem Bingol, Young-Mo Kim, Michael J Betenbaugh, Karsten Zengler | Nature Communications | 2020-07-30 |
| Microbiome and Metagenome Analyses of a Closed Habitat during Human Occupation. | Ganesh Babu Malli Mohan, Ceth W Parker, Camilla Urbaniak, Nitin K Singh, Anthony Hood, Jeremiah J Minich, Rob Knight, Michelle Rucker, Kasthuri Venkateswaran | MSystems | 2020-07-28 |
| Marine microbial natural products: the evolution of a new field of science. | William Bill Fenical | The Journal Of Antibiotics | 2020-07-27 |
| Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity. | Patrick V Phaneuf, James T Yurkovich, David Heckmann, Muyao Wu, Troy E Sandberg, Zachary A King, Justin Tan, Bernhard O Palsson, Adam M Feist | BMC Genomics | 2020-07-25 |
| MicroRNAs and Their Targetomes in Tumor-Immune Communication. | Sunglim Cho, Jesse W Tai, Li-Fan Lu | Cancers | 2020-07-24 |
| Six novel species of the obligate marine actinobacterium , sp. nov., sp. nov., sp. nov., sp. nov., sp. nov. and sp. nov., and emended description of the genus . | Brenda Román-Ponce, Natalie Millán-Aguiñaga, Dulce Guillen-Matus, Alexander B Chase, Joape G M Ginigini, Katy Soapi, Klaus D Feussner, Paul R Jensen, Martha E Trujillo | International Journal Of Systematic And Evolutionary Microbiology | 2020-07-23 |
| Facing the Change Together: Reflections of Coping and Resilience From American Geriatric Psychiatrists During COVID-19. | Carmen Black Parker, Malcolm P Forbes, Ipsit V Vahia, Brent P Forester, Dilip V Jeste, Charles F Reynolds | The American Journal Of Geriatric Psychiatry : Official Journal Of The American Association For Geriatric Psychiatry | 2020-07-23 |
| Facing the change together: reflections of coping and resilience from American geriatric psychiatrists during COVID-19. | Carmen Black Parker, Malcolm P Forbes, Ipsit V Vahia, Brent P Forester, Dilip V Jeste, Charles F Reynolds | International Psychogeriatrics | 2020-07-23 |
| Biomarkers for the Discrimination of Acute Kawasaki Disease From Infections in Childhood. | Judith Zandstra, Annemarie van de Geer, Michael W T Tanck, Diana van Stijn-Bringas Dimitriades, Cathelijn E M Aarts, Sanne M Dietz, Robin van Bruggen, Nina A Schweintzger, Werner Zenz, Marieke Emonts, Dace Zavadska, Marko Pokorn, Effua Usuf, Henriette A Moll, Luregn J Schlapbach, Enitan D Carrol, Stephane Paulus, Maria Tsolia, Colin Fink, Shunmay Yeung, Chisato Shimizu, Adriana Tremoulet, Rachel Galassini, Victoria J Wright, Federico Martinón-Torres, Jethro Herberg, Jane Burns, Michael Levin, Taco W Kuijpers, | Frontiers In Pediatrics | 2020-07-22 |
| Independent component analysis of E. coli's transcriptome reveals the cellular processes that respond to heterologous gene expression. | Justin Tan, Anand V Sastry, Karoline S Fremming, Sara P Bjørn, Alexandra Hoffmeyer, Sangwoo Seo, Bjørn G Voldborg, Bernhard O Palsson | Metabolic Engineering | 2020-07-22 |
| Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals. | Joonatan Palmu, Aaro Salosensaari, Aki S Havulinna, Susan Cheng, Michael Inouye, Mohit Jain, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Erkki Vartiainen, Tiina Laatikainen, Pekka Jousilahti, Veikko Salomaa, Rob Knight, Leo Lahti, Teemu J Niiranen | Journal Of The American Heart Association | 2020-07-21 |
| Virulence as a Side Effect of Interspecies Interaction in Coral Pathogens. | Esther Rubio-Portillo, Ana B Martin-Cuadrado, Andrés M Caraballo-Rodríguez, Forest Rohwer, Pieter C Dorrestein, Josefa Antón | MBio | 2020-07-21 |
| T4 Pili Promote Colonization and Immune Evasion Phenotypes of Nonencapsulated M4 Streptococcus pyogenes. | Yi-Hsuan Chen, Shao-Hui Li, Yao-Cheng Yang, Shu-Hao Hsu, Victor Nizet, Yung-Chi Chang | MBio | 2020-07-21 |
| Changes in the fecal bacterial microbiota associated with disease severity in alcoholic hepatitis patients. | Sonja Lang, Bradley Fairfied, Bei Gao, Yi Duan, Xinlian Zhang, Derrick E Fouts, Bernd Schnabl | Gut Microbes | 2020-07-20 |
| Antibiotics and Innate Immunity: A Cooperative Effort Toward the Successful Treatment of Infections. | Andrew Berti, Warren Rose, Victor Nizet, George Sakoulas | Open Forum Infectious Diseases | 2020-07-20 |
| In Reply: Navigating personal risk in rhinologic surgery during the COVID-19 pandemic. | Adam S DeConde, Carol H Yan, Robert P DeConde | International Forum Of Allergy & Rhinology | 2020-07-19 |
| Pathogen Interference: Targeting Virulence Factors to Tackle Intracellular Microbes. | Michael H Lee, Sean-Paul Nuccio, Manuela Raffatellu | Cell Chemical Biology | 2020-07-18 |
| Evolutionary stalling and a limit on the power of natural selection to improve a cellular module. | Sandeep Venkataram, Ross Monasky, Shohreh H Sikaroodi, Sergey Kryazhimskiy, Betul Kacar | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-07-17 |
| Transcriptomic Profiling Identifies Novel Hepatic and Intestinal Genes Following Chronic Plus Binge Ethanol Feeding in Mice. | Lu Jiang, Huikuan Chu, Bei Gao, Sonja Lang, Yanhan Wang, Yi Duan, Bernd Schnabl | Digestive Diseases And Sciences | 2020-07-15 |
| Redefining fundamental concepts of transcription initiation in bacteria. | Citlalli Mejía-Almonte, Stephen J W Busby, Joseph T Wade, Jacques van Helden, Adam P Arkin, Gary D Stormo, Karen Eilbeck, Bernhard O Palsson, James E Galagan, Julio Collado-Vides | Nature Reviews. Genetics | 2020-07-14 |
| Telomere-to-telomere assembly of a complete human X chromosome. | Karen H Miga, Sergey Koren, Arang Rhie, Mitchell R Vollger, Ariel Gershman, Andrey Bzikadze, Shelise Brooks, Edmund Howe, David Porubsky, Glennis A Logsdon, Valerie A Schneider, Tamara Potapova, Jonathan Wood, William Chow, Joel Armstrong, Jeanne Fredrickson, Evgenia Pak, Kristof Tigyi, Milinn Kremitzki, Christopher Markovic, Valerie Maduro, Amalia Dutra, Gerard G Bouffard, Alexander M Chang, Nancy F Hansen, Amy B Wilfert, Françoise Thibaud-Nissen, Anthony D Schmitt, Jon-Matthew Belton, Siddarth Selvaraj, Megan Y Dennis, Daniela C Soto, Ruta Sahasrabudhe, Gulhan Kaya, Josh Quick, Nicholas J Loman, Nadine Holmes, Matthew Loose, Urvashi Surti, Rosa Ana Risques, Tina A Graves Lindsay, Robert Fulton, Ira Hall, Benedict Paten, Kerstin Howe, Winston Timp, Alice Young, James C Mullikin, Pavel A Pevzner, Jennifer L Gerton, Beth A Sullivan, Evan E Eichler, Adam M Phillippy | Nature | 2020-07-14 |
| Shaping an Endospore: Architectural Transformations During Sporulation. | Kanika Khanna, Javier Lopez-Garrido, Kit Pogliano | Annual Review Of Microbiology | 2020-07-13 |
| Breastmilk Feeding Practices Are Associated with the Co-Occurrence of Bacteria in Mothers' Milk and the Infant Gut: the CHILD Cohort Study. | Kelsey Fehr, Shirin Moossavi, Hind Sbihi, Rozlyn C T Boutin, Lars Bode, Bianca Robertson, Chloe Yonemitsu, Catherine J Field, Allan B Becker, Piushkumar J Mandhane, Malcolm R Sears, Ehsan Khafipour, Theo J Moraes, Padmaja Subbarao, B Brett Finlay, Stuart E Turvey, Meghan B Azad | Cell Host & Microbe | 2020-07-10 |
| Metagenome Data on Intestinal Phage-Bacteria Associations Aids the Development of Phage Therapy against Pathobionts. | Kosuke Fujimoto, Yasumasa Kimura, Masaki Shimohigoshi, Takeshi Satoh, Shintaro Sato, Georg Tremmel, Miho Uematsu, Yunosuke Kawaguchi, Yuki Usui, Yoshiko Nakano, Tetsuya Hayashi, Koji Kashima, Yoshikazu Yuki, Kiyoshi Yamaguchi, Yoichi Furukawa, Masanori Kakuta, Yutaka Akiyama, Rui Yamaguchi, Sheila E Crowe, Peter B Ernst, Satoru Miyano, Hiroshi Kiyono, Seiya Imoto, Satoshi Uematsu | Cell Host & Microbe | 2020-07-10 |
| Pre-existing immunity to SARS-CoV-2: the knowns and unknowns. | Alessandro Sette, Shane Crotty | Nature Reviews. Immunology | 2020-07-09 |
| Intestinal Virome Signature Associated With Severity of Nonalcoholic Fatty Liver Disease. | Sonja Lang, Münevver Demir, Anna Martin, Lu Jiang, Xinlian Zhang, Yi Duan, Bei Gao, Hilmar Wisplinghoff, Philipp Kasper, Christoph Roderburg, Frank Tacke, Hans-Michael Steffen, Tobias Goeser, Juan G Abraldes, Xin M Tu, Rohit Loomba, Peter Stärkel, David Pride, Derrick E Fouts, Bernd Schnabl | Gastroenterology | 2020-07-09 |
| Impact of insertion sequences on convergent evolution of Shigella species. | Jane Hawkey, Jonathan M Monk, Helen Billman-Jacobe, Bernhard Palsson, Kathryn E Holt | PLoS Genetics | 2020-07-09 |
| Daptomycin for Pediatric Gram-Positive Acute Hematogenous Osteomyelitis. | John S Bradley, Antonio C Arrieta, Valeri A Digtyar, Myra W Popejoy, Anjana Grandhi, Paula Bokesch, Ellie Hershberger, Mary Beth Dorr, Christopher M Tan, Yoshihiko Murata, Dominik J Wolf, Mekki Bensaci | The Pediatric Infectious Disease Journal | 2020-07-09 |
| Microbial Products and Metabolites Contributing to Alcohol-Related Liver Disease. | Bei Gao, Atoosa Emami, Shilpa Nath, Bernd Schnabl | Molecular Nutrition & Food Research | 2020-07-07 |
| Site-Directed Mutagenesis of Large Biosynthetic Gene Clusters Oligonucleotide Recombineering and CRISPR/Cas9 Targeting. | Jia Jia Zhang, Bradley S Moore | ACS Synthetic Biology | 2020-07-06 |
| Distance, diffusion and the role of social media in a time of COVID contagion. | Sara Moukarzel, Miguel Del Fresno, Lars Bode, Alan J Daly | Maternal & Child Nutrition | 2020-07-06 |
| Repurposed drugs block toxin-driven platelet clearance by the hepatic Ashwell-Morell receptor to clear bacteremia. | Josh Sun, Satoshi Uchiyama, Joshua Olson, Yosuke Morodomi, Ingrid Cornax, Nao Ando, Yohei Kohno, May M T Kyaw, Bernice Aguilar, Nina M Haste, Sachiko Kanaji, Taisuke Kanaji, Warren E Rose, George Sakoulas, Jamey D Marth, Victor Nizet | Science Translational Medicine | 2020-07-05 |
| Staphylococcus epidermidis protease EcpA can be a deleterious component of the skin microbiome in atopic dermatitis. | Laura Cau, Michael R Williams, Anna M Butcher, Teruaki Nakatsuji, Jeffrey S Kavanaugh, Joyce Y Cheng, Faiza Shafiq, Kyle Higbee, Tissa R Hata, Alexander R Horswill, Richard L Gallo | The Journal Of Allergy And Clinical Immunology | 2020-07-04 |
| Detection of Neisseria gonorrhoeae from Joint Aspirate by Metagenomic Sequencing in Disseminated Gonococcal Infection. | Betial Asmerom, Ian Drobish, Britanny Winckler, Leslie Chiang, Lauge Farnaes, Julia Beauchamp-Walters, John S Bradley, Nanda Ramchandar | Journal Of The Pediatric Infectious Diseases Society | 2020-07-03 |
| Revealing 29 sets of independently modulated genes in , their regulators, and role in key physiological response. | Saugat Poudel, Hannah Tsunemoto, Yara Seif, Anand V Sastry, Richard Szubin, Sibei Xu, Henrique Machado, Connor A Olson, Amitesh Anand, Joe Pogliano, Victor Nizet, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-07-02 |
| A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis. | Tae Gyu Oh, Susy M Kim, Cyrielle Caussy, Ting Fu, Jian Guo, Shirin Bassirian, Seema Singh, Egbert V Madamba, Ricki Bettencourt, Lisa Richards, Ruth T Yu, Annette R Atkins, Tao Huan, David A Brenner, Claude B Sirlin, Michael Downes, Ronald M Evans, Rohit Loomba | Cell Metabolism | 2020-06-30 |
| Reply. | Ashraf S Harahsheh, Nagib Dahdah, Jane W Newburger, Michael A Portman, Robert Tulloh, Brian W McCrindle, Rolando Cimaz, Jane C Burns | The Journal Of Pediatrics | 2020-06-30 |
| Inflammation in Mental Disorders: Is the Microbiota the Missing Link? | Sophie Ouabbou, Ying He, Keith Butler, Ming Tsuang | Neuroscience Bulletin | 2020-06-27 |
| Translating gene drive science to promote linguistic diversity in community and stakeholder engagement. | Cynthia Cheung, Stephanie Gamez, Rebeca Carballar-Lejarazú, Victor Ferman, Váleri N Vásquez, Gerard Terradas, Judy Ishikawa, Cynthia E Schairer, Ethan Bier, John M Marshall, Anthony A James, Omar S Akbari, Cinnamon S Bloss | Global Public Health | 2020-06-26 |
| Synoviocyte-targeted therapy synergizes with TNF inhibition in arthritis reversal. | Mattias N D Svensson, Martina Zoccheddu, Shen Yang, Gyrid Nygaard, Christian Secchi, Karen M Doody, Kamil Slowikowski, Fumitaka Mizoguchi, Frances Humby, Rebecca Hands, Eugenio Santelli, Cristiano Sacchetti, Kuninobu Wakabayashi, Dennis J Wu, Christopher Barback, Rizi Ai, Wei Wang, Gary P Sims, Piotr Mydel, Tsuyoshi Kasama, David L Boyle, Francesco Galimi, David Vera, Michel L Tremblay, Soumya Raychaudhuri, Michael B Brenner, Gary S Firestein, Costantino Pitzalis, Anna-Karin H Ekwall, Stephanie M Stanford, Nunzio Bottini | Science Advances | 2020-06-26 |
| Intestinal permeability, microbial translocation, changes in duodenal and fecal microbiota, and their associations with alcoholic liver disease progression in humans. | Luca Maccioni, Bei Gao, Sophie Leclercq, Boris Pirlot, Yves Horsmans, Philippe De Timary, Isabelle Leclercq, Derrick Fouts, Bernd Schnabl, Peter Stärkel | Gut Microbes | 2020-06-26 |
| Sierra Nevada mountain lake microbial communities are structured by temperature, resources and geographic location. | Marika A Schulhof, Andrew E Allen, Eric E Allen, Natalie Mladenov, John P McCrow, Natalie T Jones, Jessica Blanton, Hamanda B Cavalheri, Drishti Kaul, Celia C Symons, Jonathan B Shurin | Molecular Ecology | 2020-06-24 |
| In-Hospital Use of Statins Is Associated with a Reduced Risk of Mortality among Individuals with COVID-19. | Xiao-Jing Zhang, Juan-Juan Qin, Xu Cheng, Lijun Shen, Yan-Ci Zhao, Yufeng Yuan, Fang Lei, Ming-Ming Chen, Huilin Yang, Liangjie Bai, Xiaohui Song, Lijin Lin, Meng Xia, Feng Zhou, Jianghua Zhou, Zhi-Gang She, Lihua Zhu, Xinliang Ma, Qingbo Xu, Ping Ye, Guohua Chen, Liming Liu, Weiming Mao, Youqin Yan, Bing Xiao, Zhigang Lu, Gang Peng, Mingyu Liu, Jun Yang, Luyu Yang, Changjiang Zhang, Haofeng Lu, Xigang Xia, Daihong Wang, Xiaofeng Liao, Xiang Wei, Bing-Hong Zhang, Xin Zhang, Juan Yang, Guang-Nian Zhao, Peng Zhang, Peter P Liu, Rohit Loomba, Yan-Xiao Ji, Jiahong Xia, Yibin Wang, Jingjing Cai, Jiao Guo, Hongliang Li | Cell Metabolism | 2020-06-24 |
| A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes. | Sheila Podell, Jessica M Blanton, Aaron Oliver, Michelle A Schorn, Vinayak Agarwal, Jason S Biggs, Bradley S Moore, Eric E Allen | Microbiome | 2020-06-23 |
| High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy. | Ruma Raghuvanshi, Karla Vasco, Yoshiki Vázquez-Baeza, Lingjing Jiang, James T Morton, Danxun Li, Antonio Gonzalez, Lindsay DeRight Goldasich, Gregory Humphrey, Gail Ackermann, Austin D Swafford, Douglas Conrad, Rob Knight, Pieter C Dorrestein, Robert A Quinn | MSystems | 2020-06-23 |
| Bcl-6 is the nexus transcription factor of T follicular helper cells via repressor-of-repressor circuits. | Jinyong Choi, Huitian Diao, Caterina E Faliti, Jacquelyn Truong, Meghan Rossi, Simon Bélanger, Bingfei Yu, Ananda W Goldrath, Matthew E Pipkin, Shane Crotty | Nature Immunology | 2020-06-22 |
| Rationale and design of the Kidney Precision Medicine Project. | Ian H de Boer, Charles E Alpers, Evren U Azeloglu, Ulysses G J Balis, Jonathan M Barasch, Laura Barisoni, Kristina N Blank, Andrew S Bomback, Keith Brown, Pierre C Dagher, Ashveena L Dighe, Michael T Eadon, Tarek M El-Achkar, Joseph P Gaut, Nir Hacohen, Yongqun He, Jeffrey B Hodgin, Sanjay Jain, John A Kellum, Krzysztof Kiryluk, Richard Knight, Zoltan G Laszik, Chrysta Lienczewski, Laura H Mariani, Robyn L McClelland, Steven Menez, Dennis G Moledina, Sean D Mooney, John F O'Toole, Paul M Palevsky, Chirag R Parikh, Emilio D Poggio, Sylvia E Rosas, Matthew R Rosengart, Minnie M Sarwal, Jennifer A Schaub, John R Sedor, Kumar Sharma, Becky Steck, Robert D Toto, Olga G Troyanskaya, Katherine R Tuttle, Miguel A Vazquez, Sushrut S Waikar, Kayleen Williams, Francis Perry Wilson, Kun Zhang, Ravi Iyengar, Matthias Kretzler, Jonathan Himmelfarb, | Kidney International | 2020-06-22 |
| Fermentable fiber-induced hepatocellular carcinoma in mice recapitulates gene signatures found in human liver cancer. | Darshan Shimoga Chandrashekar, Rachel M Golonka, Beng San Yeoh, David J Gonzalez, Mathias Heikenwälder, Andrew T Gerwirtz, Sooryanarayana Varambally, Matam Vijay-Kumar | PloS One | 2020-06-19 |
| Functional Microbiomics Reveals Alterations of the Gut Microbiome and Host Co-Metabolism in Patients With Alcoholic Hepatitis. | Bei Gao, Yi Duan, Sonja Lang, Dinesh Barupal, Tsung-Chin Wu, Luis Valdiviez, Bryan Roberts, Ying Yng Choy, Tong Shen, Gregory Byram, Ying Zhang, Sili Fan, Benjamin Wancewicz, Yan Shao, Kevin Vervier, Yanhan Wang, Rongrong Zhou, Lu Jiang, Shilpa Nath, Rohit Loomba, Juan G Abraldes, Ramon Bataller, Xin M Tu, Peter Stärkel, Trevor D Lawley, Oliver Fiehn, Bernd Schnabl | Hepatology Communications | 2020-06-19 |
| Modulating the quantity of HIV Env-specific CD4 T cell help promotes rare B cell responses in germinal centers. | Jeong Hyun Lee, Joyce K Hu, Erik Georgeson, Catherine Nakao, Bettina Groschel, Thamotharampillai Dileepan, Marc K Jenkins, Gregory Seumois, Pandurangan Vijayanand, William R Schief, Shane Crotty | The Journal Of Experimental Medicine | 2020-06-17 |
| Streptococcus pyogenes upregulates arginine catabolism to exert its pathogenesis on the skin surface. | Yujiro Hirose, Masaya Yamaguchi, Tomoko Sumitomo, Masanobu Nakata, Tomoki Hanada, Daisuke Okuzaki, Daisuke Motooka, Yasushi Mori, Hiroshi Kawasaki, Alison Coady, Satoshi Uchiyama, Masanobu Hiraoka, Raymond H Zurich, Masayuki Amagai, Victor Nizet, Shigetada Kawabata | Cell Reports | 2020-06-17 |
| Harnessing Activin A Adjuvanticity to Promote Antibody Responses to BG505 HIV Envelope Trimers. | Diane G Carnathan, Kirti Kaushik, Ali H Ellebedy, Chiamaka A Enemuo, Etse H Gebru, Pallavi Dhadvai, Mohammed Ata Ur Rasheed, Matthias G Pauthner, Gabriel Ozorowski, Rafi Ahmed, Dennis R Burton, Andrew B Ward, Guido Silvestri, Shane Crotty, Michela Locci | Frontiers In Immunology | 2020-06-16 |
| Evaluation of SARS-CoV-2 in Breastmilk from 18 Infected Women. | Christina D Chambers, Paul Krogstad, Kerri Bertrand, Deisy Contreras, Nicole H Tobin, Lars Bode, Grace M Aldrovandi | MedRxiv : The Preprint Server For Health Sciences | 2020-06-16 |
| Isolation of potent SARS-CoV-2 neutralizing antibodies and protection from disease in a small animal model. | Thomas F Rogers, Fangzhu Zhao, Deli Huang, Nathan Beutler, Alison Burns, Wan-Ting He, Oliver Limbo, Chloe Smith, Ge Song, Jordan Woehl, Linlin Yang, Robert K Abbott, Sean Callaghan, Elijah Garcia, Jonathan Hurtado, Mara Parren, Linghang Peng, Sydney Ramirez, James Ricketts, Michael J Ricciardi, Stephen A Rawlings, Nicholas C Wu, Meng Yuan, Davey M Smith, David Nemazee, John R Teijaro, James E Voss, Ian A Wilson, Raiees Andrabi, Bryan Briney, Elise Landais, Devin Sok, Joseph G Jardine, Dennis R Burton | Science (New York, N.Y.) | 2020-06-15 |
| Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information. | Zhoutao Chen, Long Pham, Tsai-Chin Wu, Guoya Mo, Yu Xia, Peter L Chang, Devin Porter, Tan Phan, Huu Che, Hao Tran, Vikas Bansal, Justin Shaffer, Pedro Belda-Ferre, Greg Humphrey, Rob Knight, Pavel Pevzner, Son Pham, Yong Wang, Ming Lei | Genome Research | 2020-06-15 |
| CBASS Immunity Uses CARF-Related Effectors to Sense 3'-5'- and 2'-5'-Linked Cyclic Oligonucleotide Signals and Protect Bacteria from Phage Infection. | Brianna Lowey, Aaron T Whiteley, Alexander F A Keszei, Benjamin R Morehouse, Ian T Mathews, Sadie P Antine, Victor J Cabrera, Dmitry Kashin, Percy Niemann, Mohit Jain, Frank Schwede, John J Mekalanos, Sichen Shao, Amy S Y Lee, Philip J Kranzusch | Cell | 2020-06-15 |
| The selective PPAR-delta agonist seladelpar reduces ethanol-induced liver disease by restoring gut barrier function and bile acid homeostasis in mice. | Huikuan Chu, Lu Jiang, Bei Gao, Nagsen Gautam, Jawaher A Alamoudi, Sonja Lang, Yanhan Wang, Yi Duan, Yazen Alnouti, Edward E Cable, Bernd Schnabl | Translational Research : The Journal Of Laboratory And Clinical Medicine | 2020-06-15 |
| Shielding and Beyond: The Roles of Glycans in SARS-CoV-2 Spike Protein. | Lorenzo Casalino, Zied Gaieb, Jory A Goldsmith, Christy K Hjorth, Abigail C Dommer, Aoife M Harbison, Carl A Fogarty, Emilia P Barros, Bryn C Taylor, Jason S McLellan, Elisa Fadda, Rommie E Amaro | BioRxiv : The Preprint Server For Biology | 2020-06-11 |
| Efficacy of Antigonococcal CMP-Nonulosonate Therapeutics Require Cathelicidins. | Sunita Gulati, Ian C Schoenhofen, Theresa Lindhout-Djukic, Lisa A Lewis, Iesha Y Moustafa, Sudeshna Saha, Bo Zheng, Nancy Nowak, Peter A Rice, Ajit Varki, Sanjay Ram | The Journal Of Infectious Diseases | 2020-06-10 |
| Clinical Characteristics of 58 Children With a Pediatric Inflammatory Multisystem Syndrome Temporally Associated With SARS-CoV-2. | Elizabeth Whittaker, Alasdair Bamford, Julia Kenny, Myrsini Kaforou, Christine E Jones, Priyen Shah, Padmanabhan Ramnarayan, Alain Fraisse, Owen Miller, Patrick Davies, Filip Kucera, Joe Brierley, Marilyn McDougall, Michael Carter, Adriana Tremoulet, Chisato Shimizu, Jethro Herberg, Jane C Burns, Hermione Lyall, Michael Levin, | JAMA | 2020-06-09 |
| Persistent Smell Loss Following Undetectable SARS-CoV-2. | Carol H Yan, Divya P Prajapati, Michele L Ritter, Adam S DeConde | Otolaryngology--head And Neck Surgery : Official Journal Of American Academy Of Otolaryngology-Head And Neck Surgery | 2020-06-09 |
| Bacterial communities associated with cell phones and shoes. | David A Coil, Russell Y Neches, Jenna M Lang, Guillaume Jospin, Wendy E Brown, Darlene Cavalier, Jarrad Hampton-Marcell, Jack A Gilbert, Jonathan A Eisen | PeerJ | 2020-06-09 |
| Spatial Compartmentalization of the Microbiome between the Lumen and Crypts Is Lost in the Murine Cecum following the Process of Surgery, Including Overnight Fasting and Exposure to Antibiotics. | Alexander Zaborin, Beatriz Penalver Bernabe, Robert Keskey, Naseer Sangwan, Sanjiv Hyoju, Neil Gottel, Jack A Gilbert, Olga Zaborina, John C Alverdy | MSystems | 2020-06-09 |
| Reply to: Self-reported olfactory loss in COVID-19: is it really a favorable prognostic factor? | Carol H Yan, Farhoud Faraji, Adam S DeConde | International Forum Of Allergy & Rhinology | 2020-06-08 |
| Temporal variations in bacterial community diversity and composition throughout intensive care unit renovations. | Jessica Chopyk, Kevan Akrami, Tovia Bavly, Ji H Shin, Leila K Schwanemann, Melissa Ly, Richa Kalia, Ying Xu, Scott T Kelley, Atul Malhotra, Francesca J Torriani, Daniel A Sweeney, David T Pride | Microbiome | 2020-06-08 |
| Tuning the Innate Immune Response to Cyclic Dinucleotides by Using Atomic Mutagenesis. | Yao Li, Andrea Fin, Alexander R Rovira, Yichi Su, Andrew B Dippel, Jonathan Andrés Valderrama, Angelica M Riestra, Victor Nizet, Ming C Hammond, Yitzhak Tor | Chembiochem : A European Journal Of Chemical Biology | 2020-06-08 |
| Self-reported olfactory loss associates with outpatient clinical course in COVID-19. | Carol H Yan, Farhoud Faraji, Divya P Prajapati, Benjamin T Ostrander, Adam S DeConde | International Forum Of Allergy & Rhinology | 2020-06-07 |
| Microbial Synthesis of Human-Hormone Melatonin at Gram Scales. | Hao Luo, Konstantin Schneider, Ulla Christensen, Yang Lei, Markus Herrgard, Bernhard Ø Palsson | ACS Synthetic Biology | 2020-06-05 |
| Human milk fungi: environmental determinants and inter-kingdom associations with milk bacteria in the CHILD Cohort Study. | Shirin Moossavi, Kelsey Fehr, Hooman Derakhshani, Hind Sbihi, Bianca Robertson, Lars Bode, Jeffrey Brook, Stuart E Turvey, Theo J Moraes, Allan B Becker, Piushkumar J Mandhane, Malcolm R Sears, Ehsan Khafipour, Padmaja Subbarao, Meghan B Azad | BMC Microbiology | 2020-06-05 |
| Comparative Genomics Determines Strain-Dependent Secondary Metabolite Production in Strains. | Woori Kim, Namil Lee, Soonkyu Hwang, Yongjae Lee, Jihun Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | Biomolecules | 2020-06-05 |
| Earth microbial co-occurrence network reveals interconnection pattern across microbiomes. | Bin Ma, Yiling Wang, Shudi Ye, Shan Liu, Erinne Stirling, Jack A Gilbert, Karoline Faust, Rob Knight, Janet K Jansson, Cesar Cardona, Lisa Röttjers, Jianming Xu | Microbiome | 2020-06-04 |
| Paroxetine Administration Affects Microbiota and Bile Acid Levels in Mice. | Frederik Dethloff, Fernando Vargas, Emmanuel Elijah, Robert Quinn, Dong Ik Park, David P Herzog, Marianne B Müller, Emily C Gentry, Rob Knight, Antonio Gonzalez, Pieter C Dorrestein, Christoph W Turck | Frontiers In Psychiatry | 2020-06-04 |
| Microbial Ecology of Atlantic Salmon (Salmo salar) Hatcheries: Impacts of the Built Environment on Fish Mucosal Microbiota. | Jeremiah J Minich, Greg D Poore, Khattapan Jantawongsri, Colin Johnston, Kate Bowie, John Bowman, Rob Knight, Barbara Nowak, Eric E Allen | Applied And Environmental Microbiology | 2020-06-02 |
| Comparative Genomics and Metabolomics in the Genus . | Daniel Männle, Shaun M K McKinnie, Shrikant S Mantri, Katharina Steinke, Zeyin Lu, Bradley S Moore, Nadine Ziemert, Leonard Kaysser | MSystems | 2020-06-02 |
| Predicting COVID-19 Incidence Using Anosmia and Other COVID-19 Symptomatology: Preliminary Analysis Using Google and Twitter. | Bharat A Panuganti, Aria Jafari, Bridget MacDonald, Adam S DeConde | Otolaryngology--head And Neck Surgery : Official Journal Of American Academy Of Otolaryngology-Head And Neck Surgery | 2020-06-02 |
| Association of chemosensory dysfunction and COVID-19 in patients presenting with influenza-like symptoms. | Carol H Yan, Farhoud Faraji, Divya P Prajapati, Christine E Boone, Adam S DeConde | International Forum Of Allergy & Rhinology | 2020-06-01 |
| A multiomic analysis of in situ coral-turf algal interactions. | Ty N F Roach, Mark Little, Milou G I Arts, Joel Huckeba, Andreas F Haas, Emma E George, Robert A Quinn, Ana G Cobián-Güemes, Douglas S Naliboff, Cynthia B Silveira, Mark J A Vermeij, Linda Wegley Kelly, Pieter C Dorrestein, Forest Rohwer | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-06-01 |
| SARS-CoV-2 and human milk: What is the evidence? | Kimberly A Lackey, Ryan M Pace, Janet E Williams, Lars Bode, Sharon M Donovan, Kirsi M Järvinen, Antti E Seppo, Daniel J Raiten, Courtney L Meehan, Mark A McGuire, Michelle K McGuire | Maternal & Child Nutrition | 2020-05-30 |
| Detecting personal microbiota signatures at artificial crime scenes. | Jarrad T Hampton-Marcell, Peter Larsen, Tifani Anton, Lauren Cralle, Naseer Sangwan, Simon Lax, Neil Gottel, Mariana Salas-Garcia, Candace Young, George Duncan, Jose V Lopez, Jack A Gilbert | Forensic Science International | 2020-05-30 |
| Modeling of nitrogen fixation and polymer production in the heterotrophic diazotroph DJ. | Diego Tec Campos, Cristal Zuñiga, Anurag Passi, John Del Toro, Juan D Tibocha-Bonilla, Alejandro Zepeda, Michael J Betenbaugh, Karsten Zengler | Metabolic Engineering Communications | 2020-05-30 |
| Targeted Depletion of Bacteria from Mixed Populations by Programmable Adhesion with Antagonistic Competitor Cells. | See-Yeun Ting, Esteban Martínez-García, Shuo Huang, Savannah K Bertolli, Katherine A Kelly, Kevin J Cutler, Elizabeth D Su, Hui Zhi, Qing Tang, Matthew C Radey, Manuela Raffatellu, S Brook Peterson, Víctor de Lorenzo, Joseph D Mougous | Cell Host & Microbe | 2020-05-28 |
| Developmental Immaturity of Siglec Receptor Expression on Neonatal Alveolar Macrophages Predisposes to Severe Group B Streptococcal Infection. | Sean J Lund, Kathryn A Patras, Jacqueline M Kimmey, Asami Yamamura, Lindsay D Butcher, Pamela G B Del Rosario, Gilberto E Hernandez, Alyssa M McCoy, Omar Lakhdari, Victor Nizet, Lawrence S Prince | IScience | 2020-05-28 |
| Permissive microbiome characterizes human subjects with a neurovascular disease cavernous angioma. | Sean P Polster, Anukriti Sharma, Ceylan Tanes, Alan T Tang, Patricia Mericko, Ying Cao, Julián Carrión-Penagos, Romuald Girard, Janne Koskimäki, Dongdong Zhang, Agnieszka Stadnik, Sharbel G Romanos, Seán B Lyne, Robert Shenkar, Kimberly Yan, Cornelia Lee, Amy Akers, Leslie Morrison, Myranda Robinson, Atif Zafar, Kyle Bittinger, Helen Kim, Jack A Gilbert, Mark L Kahn, Le Shen, Issam A Awad | Nature Communications | 2020-05-27 |
| Reducing transmission of SARS-CoV-2. | Kimberly A Prather, Chia C Wang, Robert T Schooley | Science (New York, N.Y.) | 2020-05-27 |
| Improving Quantitative Power in Digital PCR through Digital High-Resolution Melting. | April Aralar, Yixu Yuan, Kevin Chen, Yunshu Geng, Daniel Ortiz Velez, Mridu Sinha, Shelley M Lawrence, Stephanie I Fraley | Journal Of Clinical Microbiology | 2020-05-26 |
| A biochemically-interpretable machine learning classifier for microbial GWAS. | Erol S Kavvas, Laurence Yang, Jonathan M Monk, David Heckmann, Bernhard O Palsson | Nature Communications | 2020-05-22 |
| A genetic interaction map centered on cohesin reveals auxiliary factors involved in sister chromatid cohesion in . | Su Ming Sun, Amandine Batté, Mireille Elmer, Sophie C van der Horst, Tibor van Welsem, Gordon Bean, Trey Ideker, Fred van Leeuwen, Haico van Attikum | Journal Of Cell Science | 2020-05-22 |
| Interfacing gene circuits with microelectronics through engineered population dynamics. | M Omar Din, Aida Martin, Ivan Razinkov, Nicholas Csicsery, Jeff Hasty | Science Advances | 2020-05-22 |
| All major cholesterol-dependent cytolysins use glycans as cellular receptors. | Lucy K Shewell, Christopher J Day, Freda E-C Jen, Thomas Haselhorst, John M Atack, Josephine F Reijneveld, Arun Everest-Dass, David B A James, Kristina M Boguslawski, Stephan Brouwer, Christine M Gillen, Zhenyao Luo, Bostjan Kobe, Victor Nizet, Mark von Itzstein, Mark J Walker, Adrienne W Paton, James C Paton, Victor J Torres, Michael P Jennings | Science Advances | 2020-05-22 |
| Depletion of the Microbiome Alters the Recruitment of Neuronal Ensembles of Oxycodone Intoxication and Withdrawal. | Sierra Simpson, Adam Kimbrough, Brent Boomhower, Rio McLellan, Marcella Hughes, Kokila Shankar, Giordano de Guglielmo, Olivier George | ENeuro | 2020-05-21 |
| Engineering of multiple trypsin/chymotrypsin sites in Cry3A to enhance its activity against Monochamus alternatus Hope larvae. | Yajie Guo, Yafang Wang, Anthony J O'Donoghue, Zhenze Jiang, Rebeca Carballar-Lejarazú, Guanghong Liang, Xia Hu, Rong Wang, Lei Xu, Xiong Guan, Feiping Zhang, Songqing Wu | Pest Management Science | 2020-05-20 |
| Temporal, Environmental, and Biological Drivers of the Mucosal Microbiome in a Wild Marine Fish, Scomber japonicus. | Jeremiah J Minich, Semar Petrus, Julius D Michael, Todd P Michael, Rob Knight, Eric E Allen | MSphere | 2020-05-20 |
| Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals. | Alba Grifoni, Daniela Weiskopf, Sydney I Ramirez, Jose Mateus, Jennifer M Dan, Carolyn Rydyznski Moderbacher, Stephen A Rawlings, Aaron Sutherland, Lakshmanane Premkumar, Ramesh S Jadi, Daniel Marrama, Aravinda M de Silva, April Frazier, Aaron F Carlin, Jason A Greenbaum, Bjoern Peters, Florian Krammer, Davey M Smith, Shane Crotty, Alessandro Sette | Cell | 2020-05-20 |
| An anti-inflammatory isoflavone from soybean inoculated with a marine fungus C23-3. | Jing-Ming Yang, Ya-Yue Liu, Wen-Cong Yang, Xiao-Xiang Ma, Ying-Ying Nie, Evgenia Glukhov, Lena Gerwick, William H Gerwick, Xiao-Ling Lei, Yi Zhang | Bioscience, Biotechnology, And Biochemistry | 2020-05-20 |
| Therapeutic CMP-Nonulosonates against Multidrug-Resistant . | Sunita Gulati, Ian C Schoenhofen, Theresa Lindhout-Djukic, Melissa J Schur, Corinna S Landig, Sudeshna Saha, Lingquan Deng, Lisa A Lewis, Bo Zheng, Ajit Varki, Sanjay Ram | Journal Of Immunology (Baltimore, Md. : 1950) | 2020-05-20 |
| A protein kinase A-regulated network encodes short- and long-lived cellular memories. | Yanfei Jiang, Zohreh AkhavanAghdam, Yutian Li, Brian M Zid, Nan Hao | Science Signaling | 2020-05-19 |
| Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0. | Francesco Asnicar, Andrew Maltez Thomas, Francesco Beghini, Claudia Mengoni, Serena Manara, Paolo Manghi, Qiyun Zhu, Mattia Bolzan, Fabio Cumbo, Uyen May, Jon G Sanders, Moreno Zolfo, Evguenia Kopylova, Edoardo Pasolli, Rob Knight, Siavash Mirarab, Curtis Huttenhower, Nicola Segata | Nature Communications | 2020-05-19 |
| Opportunistic Invasive Infection by Group A Streptococcus During Anti-Interleukin-6 Immunotherapy. | Shyra Wilde, Katherine L Olivares, Victor Nizet, Hal M Hoffman, Suhas Radhakrishna, Christopher N LaRock | The Journal Of Infectious Diseases | 2020-05-18 |
| A Nitric Oxide-Releasing Topical Medication as a Potential Treatment Option for Atopic Dermatitis through Antimicrobial and Anti-Inflammatory Activity. | Emma Guttman-Yassky, Richard L Gallo, Ana B Pavel, Teruaki Nakatsuji, Randall Li, Ning Zhang, Elizabeth Messersmith, Tomoko Maeda-Chubachi | The Journal Of Investigative Dermatology | 2020-05-16 |
| Rapid isolation of potent SARS-CoV-2 neutralizing antibodies and protection in a small animal model. | Thomas F Rogers, Fangzhu Zhao, Deli Huang, Nathan Beutler, Alison Burns, Wan-Ting He, Oliver Limbo, Chloe Smith, Ge Song, Jordan Woehl, Linlin Yang, Robert K Abbott, Sean Callaghan, Elijah Garcia, Jonathan Hurtado, Mara Parren, Linghang Peng, James Ricketts, Michael J Ricciardi, Stephen A Rawlings, Davey M Smith, David Nemazee, John R Teijaro, James E Voss, Raiees Andrabi, Bryan Briney, Elise Landais, Devin Sok, Joseph G Jardine, Dennis R Burton | BioRxiv : The Preprint Server For Biology | 2020-05-15 |
| Key clinical research priorities for the pediatric community during the COVID-19 pandemic. | Gary J Noel, Jonathan M Davis, Octavio Ramilo, John S Bradley, Edward Connor | Pediatric Research | 2020-05-15 |
| Author Correction: A Engineered immunogen binding to alum adjuvant enhances humoral immunity. | Tyson J Moyer, Yu Kato, Wuhbet Abraham, Jason Y H Chang, Daniel W Kulp, Nicki Watson, Hannah L Turner, Sergey Menis, Robert K Abbott, Jinal N Bhiman, Mariane B Melo, Hayley A Simon, Sara Herrera-De la Mata, Shu Liang, Gregory Seumois, Yash Agarwal, Na Li, Dennis R Burton, Andrew B Ward, William R Schief, Shane Crotty, Darrell J Irvine | Nature Medicine | 2020-05-15 |
| Dynamic resource allocation drives growth under nitrogen starvation in eukaryotes. | Juan D Tibocha-Bonilla, Manish Kumar, Anne Richelle, Rubén D Godoy-Silva, Karsten Zengler, Cristal Zuñiga | NPJ Systems Biology And Applications | 2020-05-15 |
| Frequency of Dosing of Cephalexin for Oral Step-Down Therapy of Pediatric Osteoarticular Infections Caused by Methicillin-Sensitive Staphylococcus Aureus. | Nanda Ramchandar, John Arnold, Chris Cannavino, John S Bradley | The Pediatric Infectious Disease Journal | 2020-05-14 |
| Mersaquinone, A New Tetracene Derivative from the Marine-Derived sp. EG1 Exhibiting Activity against Methicillin-Resistant (MRSA). | Min Cheol Kim, Reiko Cullum, Ali M S Hebishy, Hala A Mohamed, Ahmed H I Faraag, Nehad M Salah, Mohamed S Abdelfattah, William Fenical | Antibiotics (Basel, Switzerland) | 2020-05-14 |
| Reproducible molecular networking of untargeted mass spectrometry data using GNPS. | Allegra T Aron, Emily C Gentry, Kerry L McPhail, Louis-Félix Nothias, Mélissa Nothias-Esposito, Amina Bouslimani, Daniel Petras, Julia M Gauglitz, Nicole Sikora, Fernando Vargas, Justin J J van der Hooft, Madeleine Ernst, Kyo Bin Kang, Christine M Aceves, Andrés Mauricio Caraballo-Rodríguez, Irina Koester, Kelly C Weldon, Samuel Bertrand, Catherine Roullier, Kunyang Sun, Richard M Tehan, Cristopher A Boya P, Martin H Christian, Marcelino Gutiérrez, Aldo Moreno Ulloa, Javier Andres Tejeda Mora, Randy Mojica-Flores, Johant Lakey-Beitia, Victor Vásquez-Chaves, Yilue Zhang, Angela I Calderón, Nicole Tayler, Robert A Keyzers, Fidele Tugizimana, Nombuso Ndlovu, Alexander A Aksenov, Alan K Jarmusch, Robin Schmid, Andrew W Truman, Nuno Bandeira, Mingxun Wang, Pieter C Dorrestein | Nature Protocols | 2020-05-13 |
| Presentation of the Julius M. Friedenwald Medal to Gail A. Hecht, MD, MS. | David W Hecht, Kim E Barrett | Gastroenterology | 2020-05-11 |
| T cell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers. | Prabhu S Arunachalam, Tysheena P Charles, Vineet Joag, Venkata S Bollimpelli, Madeleine K D Scott, Florian Wimmers, Samantha L Burton, Celia C Labranche, Caroline Petitdemange, Sailaja Gangadhara, Tiffany M Styles, Clare F Quarnstrom, Korey A Walter, Thomas J Ketas, Traci Legere, Pradeep Babu Jagadeesh Reddy, Sudhir Pai Kasturi, Anthony Tsai, Bertrand Z Yeung, Shakti Gupta, Mark Tomai, John Vasilakos, George M Shaw, Chil-Yong Kang, John P Moore, Shankar Subramaniam, Purvesh Khatri, David Montefiori, Pamela A Kozlowski, Cynthia A Derdeyn, Eric Hunter, David Masopust, Rama R Amara, Bali Pulendran | Nature Medicine | 2020-05-11 |
| Exposure of to Environmental Stress and Clinically Used Antibiotics Reveals Common Proteome Response among Pathogenic Mycobacteria. | Rajoana Rojony, Lia Danelishvili, Anaamika Campeau, Jacob M Wozniak, David J Gonzalez, Luiz E Bermudez | Microorganisms | 2020-05-09 |
| Sex-dependent associations between addiction-related behaviors and the microbiome in outbred rats. | Veronica L Peterson, Jerry B Richards, Paul J Meyer, Raul Cabrera-Rubio, Jordan A Tripi, Christopher P King, Oksana Polesskaya, Amelie Baud, Apurva S Chitre, Thomaz F S Bastiaanssen, Leah Solberg Woods, Fiona Crispie, Timothy G Dinan, Paul D Cotter, Abraham A Palmer, John F Cryan | EBioMedicine | 2020-05-08 |
| Transcriptome and translatome profiles of Streptomyces species in different growth phases. | Woori Kim, Soonkyu Hwang, Namil Lee, Yongjae Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | Scientific Data | 2020-05-08 |
| Comparison of metal-bound and unbound structures of aminopeptidase B proteins from Escherichia coli and Yersinia pestis. | George Minasov, Matthew R Lam, Monica Rosas-Lemus, Joanna Sławek, Magdalena Woinska, Ivan G Shabalin, Ludmilla Shuvalova, Bernhard Ø Palsson, Adam Godzik, Wladek Minor, Karla J F Satchell | Protein Science : A Publication Of The Protein Society | 2020-05-08 |
| Microbiome profile associated with malignant pleural effusion. | Samira Shojaee, Anukriti Sharma, Neil Gottel, Trinidad Sanchez, Jack A Gilbert, Najib M Rahman | PloS One | 2020-05-08 |
| Executive Summary: Therapeutic Monitoring of Vancomycin for Serious Methicillin-Resistant Staphylococcus aureus Infections: A Revised Consensus Guideline and Review of the American Society of Health-System Pharmacists, the Infectious Diseases Society of America, the Pediatric Infectious Diseases Society, and the Society of Infectious Diseases Pharmacists. | Michael J Rybak, Jennifer Le, Thomas Lodise, Donald Levine, John Bradley, Catherine Liu, Bruce Mueller, Manjunath Pai, Annie Wong-Beringer, John C Rotschafer, Keith Rodvold, Holly D Maples, Benjamin M Lomaestro | Journal Of The Pediatric Infectious Diseases Society | 2020-05-06 |
| Bladder bacterial diversity differs in continent and incontinent women: a cross-sectional study. | Travis K Price, Huaiying Lin, Xiang Gao, Krystal J Thomas-White, Evann E Hilt, Elizabeth R Mueller, Alan J Wolfe, Qunfeng Dong, Linda Brubaker | American Journal Of Obstetrics And Gynecology | 2020-05-05 |
| Missed or delayed diagnosis of Kawasaki disease during the 2019 novel coronavirus disease (COVID-19) pandemic. | Ashraf S Harahsheh, Nagib Dahdah, Jane W Newburger, Michael A Portman, Maryam Piram, Robert Tulloh, Brian W McCrindle, Sarah D de Ferranti, Rolando Cimaz, Dongngan T Truong, Jane C Burns | The Journal Of Pediatrics | 2020-05-03 |
| An update on the role of the microbiome in non-alcoholic fatty liver disease pathogenesis, diagnosis, and treatment. | Marialena Mouzaki, Rohit Loomba | Current Treatment Options In Gastroenterology | 2020-05-02 |
| A Community Letter Regarding Sharing Biomolecular Simulation Data for COVID-19. | Rommie E Amaro, Adrian J Mulholland | Journal Of Chemical Information And Modeling | 2020-05-01 |
| A SARS-CoV-2 protein interaction map reveals targets for drug repurposing. | David E Gordon, Gwendolyn M Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Kris M White, Matthew J O'Meara, Veronica V Rezelj, Jeffrey Z Guo, Danielle L Swaney, Tia A Tummino, Ruth Hüttenhain, Robyn M Kaake, Alicia L Richards, Beril Tutuncuoglu, Helene Foussard, Jyoti Batra, Kelsey Haas, Maya Modak, Minkyu Kim, Paige Haas, Benjamin J Polacco, Hannes Braberg, Jacqueline M Fabius, Manon Eckhardt, Margaret Soucheray, Melanie J Bennett, Merve Cakir, Michael J McGregor, Qiongyu Li, Bjoern Meyer, Ferdinand Roesch, Thomas Vallet, Alice Mac Kain, Lisa Miorin, Elena Moreno, Zun Zar Chi Naing, Yuan Zhou, Shiming Peng, Ying Shi, Ziyang Zhang, Wenqi Shen, Ilsa T Kirby, James E Melnyk, John S Chorba, Kevin Lou, Shizhong A Dai, Inigo Barrio-Hernandez, Danish Memon, Claudia Hernandez-Armenta, Jiankun Lyu, Christopher J P Mathy, Tina Perica, Kala Bharath Pilla, Sai J Ganesan, Daniel J Saltzberg, Ramachandran Rakesh, Xi Liu, Sara B Rosenthal, Lorenzo Calviello, Srivats Venkataramanan, Jose Liboy-Lugo, Yizhu Lin, Xi-Ping Huang, YongFeng Liu, Stephanie A Wankowicz, Markus Bohn, Maliheh Safari, Fatima S Ugur, Cassandra Koh, Nastaran Sadat Savar, Quang Dinh Tran, Djoshkun Shengjuler, Sabrina J Fletcher, Michael C O'Neal, Yiming Cai, Jason C J Chang, David J Broadhurst, Saker Klippsten, Phillip P Sharp, Nicole A Wenzell, Duygu Kuzuoglu-Ozturk, Hao-Yuan Wang, Raphael Trenker, Janet M Young, Devin A Cavero, Joseph Hiatt, Theodore L Roth, Ujjwal Rathore, Advait Subramanian, Julia Noack, Mathieu Hubert, Robert M Stroud, Alan D Frankel, Oren S Rosenberg, Kliment A Verba, David A Agard, Melanie Ott, Michael Emerman, Natalia Jura, Mark von Zastrow, Eric Verdin, Alan Ashworth, Olivier Schwartz, Christophe d'Enfert, Shaeri Mukherjee, Matt Jacobson, Harmit S Malik, Danica G Fujimori, Trey Ideker, Charles S Craik, Stephen N Floor, James S Fraser, John D Gross, Andrej Sali, Bryan L Roth, Davide Ruggero, Jack Taunton, Tanja Kortemme, Pedro Beltrao, Marco Vignuzzi, Adolfo García-Sastre, Kevan M Shokat, Brian K Shoichet, Nevan J Krogan | Nature | 2020-04-30 |
| QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data. | Mehrbod Estaki, Lingjing Jiang, Nicholas A Bokulich, Daniel McDonald, Antonio González, Tomasz Kosciolek, Cameron Martino, Qiyun Zhu, Amanda Birmingham, Yoshiki Vázquez-Baeza, Matthew R Dillon, Evan Bolyen, J Gregory Caporaso, Rob Knight | Current Protocols In Bioinformatics | 2020-04-29 |
| Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes. | Nathan Mih, Jonathan M Monk, Xin Fang, Edward Catoiu, David Heckmann, Laurence Yang, Bernhard O Palsson | BMC Bioinformatics | 2020-04-29 |
| Visualizing 'omic feature rankings and log-ratios using Qurro. | Marcus W Fedarko, Cameron Martino, James T Morton, Antonio González, Gibraan Rahman, Clarisse A Marotz, Jeremiah J Minich, Eric E Allen, Rob Knight | NAR Genomics And Bioinformatics | 2020-04-28 |
| A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria. | Jordan E Bisanz, Paola Soto-Perez, Cecilia Noecker, Alexander A Aksenov, Kathy N Lam, Grace E Kenney, Elizabeth N Bess, Henry J Haiser, Than S Kyaw, Feiqiao B Yu, Vayu M Rekdal, Connie W Y Ha, Suzanne Devkota, Emily P Balskus, Pieter C Dorrestein, Emma Allen-Vercoe, Peter J Turnbaugh | Cell Host & Microbe | 2020-04-28 |
| Encoding Membrane-Potential-Based Memory within a Microbial Community. | Chih-Yu Yang, Maja Bialecka-Fornal, Colleen Weatherwax, Joseph W Larkin, Arthur Prindle, Jintao Liu, Jordi Garcia-Ojalvo, Gürol M Süel | Cell Systems | 2020-04-27 |
| Detection of Nucleocapsid Antibody to SARS-CoV-2 is More Sensitive than Antibody to Spike Protein in COVID-19 Patients. | Peter D Burbelo, Francis X Riedo, Chihiro Morishima, Stephen Rawlings, Davey Smith, Sanchita Das, Jeffrey R Strich, Daniel S Chertow, Richard T Davey, Jeffrey I Cohen | MedRxiv : The Preprint Server For Health Sciences | 2020-04-24 |
| Functional Microbial Responses to Alcohol Abstinence in Patients With Alcohol Use Disorder. | Bei Gao, Atoosa Emami, Rongrong Zhou, Sonja Lang, Yi Duan, Yanhan Wang, Lu Jiang, Rohit Loomba, David A Brenner, Peter Stärkel, Bernd Schnabl | Frontiers In Physiology | 2020-04-24 |
| Active Delivery of VLPs Promotes Anti-Tumor Activity in a Mouse Ovarian Tumor Model. | Chao Wang, Berta Esteban Fernández de Ávila, Rodolfo Mundaca-Uribe, Miguel Angel Lopez-Ramirez, Doris E Ramírez-Herrera, Sourabh Shukla, Nicole F Steinmetz, Joseph Wang | Small (Weinheim An Der Bergstrasse, Germany) | 2020-04-24 |
| One-Day Construction of Multiplex Arrays to Harness Natural CRISPR-Cas Systems. | Robert M Cooper, Jeff Hasty | ACS Synthetic Biology | 2020-04-22 |
| Host Cathelicidin Exacerbates Group B Urinary Tract Infection. | Kathryn A Patras, Alison Coady, Priyanka Babu, Samuel R Shing, Albert D Ha, Emma Rooholfada, Stephanie L Brandt, Matthew Geriak, Richard L Gallo, Victor Nizet | MSphere | 2020-04-22 |
| Complete Genome Sequence of Strains FMAS_KW1, FMAS_KW2 and FMAS_AW1 Isolated from Leptospirosis Patients from Karawanalla and Awissawella, Sri Lanka. | Indika Senevirathna, Dinesha Jayasundara, Joshua P Lefler, Kira L Chaiboonm, Janith Warnasekara, Suneth Agampodi, Michael A Matthias, Joseph M Vinetz | Journal Of Genomics | 2020-04-22 |
| Implication of gut microbiota in the association between infant antibiotic exposure and childhood obesity and adiposity accumulation. | Ling-Wei Chen, Jia Xu, Shu E Soh, Izzuddin M Aris, Mya-Thway Tint, Peter D Gluckman, Kok Hian Tan, Lynette Pei-Chi Shek, Yap-Seng Chong, Fabian Yap, Keith M Godfrey, Jack A Gilbert, Neerja Karnani, Yung Seng Lee | International Journal Of Obesity (2005) | 2020-04-22 |
| Temporal Dynamics of the Adult Female Lower Urinary Tract Microbiota. | Travis K Price, Birte Wolff, Thomas Halverson, Roberto Limeira, Linda Brubaker, Qunfeng Dong, Elizabeth R Mueller, Alan J Wolfe | MBio | 2020-04-21 |
| Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates. | Joana Damas, Graham M Hughes, Kathleen C Keough, Corrie A Painter, Nicole S Persky, Marco Corbo, Michael Hiller, Klaus-Peter Koepfli, Andreas R Pfenning, Huabin Zhao, Diane P Genereux, Ross Swofford, Katherine S Pollard, Oliver A Ryder, Martin T Nweeia, Kerstin Lindblad-Toh, Emma C Teeling, Elinor K Karlsson, Harris A Lewin | BioRxiv : The Preprint Server For Biology | 2020-04-18 |
| Modified Sialic Acids on Mucus and Erythrocytes Inhibit Influenza A Virus Hemagglutinin and Neuraminidase Functions. | Karen N Barnard, Brynn K Alford-Lawrence, David W Buchholz, Brian R Wasik, Justin R LaClair, Hai Yu, Rebekah Honce, Stefan Ruhl, Petar Pajic, Erin K Daugherity, Xi Chen, Stacey L Schultz-Cherry, Hector C Aguilar, Ajit Varki, Colin R Parrish | Journal Of Virology | 2020-04-16 |
| Have incidence rates of liver cancer peaked in the United States? | Jessica L Petrick, Andrea A Florio, Rohit Loomba, Katherine A McGlynn | Cancer | 2020-04-15 |
| Epithelial transport in digestive diseases: mice, monolayers, and mechanisms. | Kim E Barrett | American Journal Of Physiology. Cell Physiology | 2020-04-15 |
| Sensitivity in Detection of Antibodies to Nucleocapsid and Spike Proteins of Severe Acute Respiratory Syndrome Coronavirus 2 in Patients With Coronavirus Disease 2019. | Peter D Burbelo, Francis X Riedo, Chihiro Morishima, Stephen Rawlings, Davey Smith, Sanchita Das, Jeffrey R Strich, Daniel S Chertow, Richard T Davey, Jeffrey I Cohen | The Journal Of Infectious Diseases | 2020-04-14 |
| How Neutrophils Meet Their End. | Shelley M Lawrence, Ross Corriden, Victor Nizet | Trends In Immunology | 2020-04-14 |
| Are we facing a crashing wave of neuropsychiatric sequelae of COVID-19? Neuropsychiatric symptoms and potential immunologic mechanisms. | Emily A Troyer, Jordan N Kohn, Suzi Hong | Brain, Behavior, And Immunity | 2020-04-13 |
| Genetically engineered control of phenotypic structure in microbial colonies. | Philip Bittihn, Andriy Didovyk, Lev S Tsimring, Jeff Hasty | Nature Microbiology | 2020-04-13 |
| Enhanced Characterization of Drug Metabolism and the Influence of the Intestinal Microbiome: A Pharmacokinetic, Microbiome, and Untargeted Metabolomics Study. | Alan K Jarmusch, Alison Vrbanac, Jeremiah D Momper, Joseph D Ma, Maher Alhaja, Marlon Liyanage, Rob Knight, Pieter C Dorrestein, Shirley M Tsunoda | Clinical And Translational Science | 2020-04-13 |
| SARS-CoV-2 and human milk: what is the evidence? | Kimberly A Lackey, Ryan M Pace, Janet E Williams, Lars Bode, Sharon M Donovan, Kirsi M Järvinen, Antti E Seppo, Daniel J Raiten, Courtney L Meehan, Mark A McGuire, Michelle K McGuire | MedRxiv : The Preprint Server For Health Sciences | 2020-04-11 |
| Clinical Best Practice Advice for Hepatology and Liver Transplant Providers During the COVID-19 Pandemic: AASLD Expert Panel Consensus Statement. | Oren K Fix, Bilal Hameed, Robert J Fontana, Ryan M Kwok, Brendan M McGuire, David C Mulligan, Daniel S Pratt, Mark W Russo, Michael L Schilsky, Elizabeth C Verna, Rohit Loomba, David E Cohen, Jorge A Bezerra, K Rajender Reddy, Raymond T Chung | Hepatology (Baltimore, Md.) | 2020-04-11 |
| The Systems Biology of Drug Metabolizing Enzymes and Transporters: Relevance to Quantitative Systems Pharmacology. | Sanjay K Nigam, Kevin T Bush, Vibha Bhatnagar, Samuel M Poloyac, Jeremiah D Momper | Clinical Pharmacology And Therapeutics | 2020-04-11 |
| Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing. | Christian Lieven, Moritz E Beber, Brett G Olivier, Frank T Bergmann, Meric Ataman, Parizad Babaei, Jennifer A Bartell, Lars M Blank, Siddharth Chauhan, Kevin Correia, Christian Diener, Andreas Dräger, Birgitta E Ebert, Janaka N Edirisinghe, José P Faria, Adam M Feist, Georgios Fengos, Ronan M T Fleming, Beatriz García-Jiménez, Vassily Hatzimanikatis, Wout van Helvoirt, Christopher S Henry, Henning Hermjakob, Markus J Herrgård, Ali Kaafarani, Hyun Uk Kim, Zachary King, Steffen Klamt, Edda Klipp, Jasper J Koehorst, Matthias König, Meiyappan Lakshmanan, Dong-Yup Lee, Sang Yup Lee, Sunjae Lee, Nathan E Lewis, Filipe Liu, Hongwu Ma, Daniel Machado, Radhakrishnan Mahadevan, Paulo Maia, Adil Mardinoglu, Gregory L Medlock, Jonathan M Monk, Jens Nielsen, Lars Keld Nielsen, Juan Nogales, Intawat Nookaew, Bernhard O Palsson, Jason A Papin, Kiran R Patil, Mark Poolman, Nathan D Price, Osbaldo Resendis-Antonio, Anne Richelle, Isabel Rocha, Benjamín J Sánchez, Peter J Schaap, Rahuman S Malik Sheriff, Saeed Shoaie, Nikolaus Sonnenschein, Bas Teusink, Paulo Vilaça, Jon Olav Vik, Judith A H Wodke, Joana C Xavier, Qianqian Yuan, Maksim Zakhartsev, Cheng Zhang | Nature Biotechnology | 2020-04-09 |
| Gut-derived uremic toxin handling in vivo requires OAT-mediated tubular secretion in chronic kidney disease. | Kevin T Bush, Prabhleen Singh, Sanjay K Nigam | JCI Insight | 2020-04-09 |
| USPSTF 2020 Recommendations on Screening for Asymptomatic Bacterial Vaginosis in Pregnancy. | Amanda L Lewis, Louise C Laurent | JAMA | 2020-04-08 |
| Computational Approach to Identifying Universal Macrophage Biomarkers. | Dharanidhar Dang, Sahar Taheri, Soumita Das, Pradipta Ghosh, Lawrence S Prince, Debashis Sahoo | Frontiers In Physiology | 2020-04-08 |
| Nonlinear Biosynthetic Assembly of Alpiniamide by a Hybrid /-AT PKS-NRPS. | Renata Sigrist, Hanna Luhavaya, Shaun M K McKinnie, Amanda Ferreira da Silva, Igor D Jurberg, Bradley S Moore, Luciana Gonzaga de Oliveira | ACS Chemical Biology | 2020-04-06 |
| The circadian clock and darkness control natural competence in cyanobacteria. | Arnaud Taton, Christian Erikson, Yiling Yang, Benjamin E Rubin, Scott A Rifkin, James W Golden, Susan S Golden | Nature Communications | 2020-04-03 |
| High-Throughput Screening of Kawasaki Disease Sera for Antiviral Antibodies. | Daniel Quiat, Tomasz Kula, Chisato Shimizu, John T Kanegaye, Adriana H Tremoulet, Zachary Pitkowsky, MaryBeth Son, Jane W Newburger, Stephen J Elledge, Jane C Burns | The Journal Of Infectious Diseases | 2020-04-02 |
| Gut Microbiota-Derived Propionate Regulates the Expression of Reg3 Mucosal Lectins and Ameliorates Experimental Colitis in Mice. | Danica Bajic, Adrian Niemann, Anna-Katharina Hillmer, Raquel Mejias-Luque, Sena Bluemel, Melissa Docampo, Maja C Funk, Elena Tonin, Michael Boutros, Bernd Schnabl, Dirk H Busch, Tsuyoshi Miki, Roland M Schmid, Marcel R M van den Brink, Markus Gerhard, Christoph K Stein-Thoeringer | Journal Of Crohn's & Colitis | 2020-04-01 |
| Palstimolide A: A Complex Polyhydroxy Macrolide with Antiparasitic Activity. | Lena Keller, Jair L Siqueira-Neto, Julia M Souza, Korina Eribez, Gregory M LaMonte, Jennifer E Smith, William H Gerwick | Molecules (Basel, Switzerland) | 2020-03-31 |
| Genetic Determinants Enabling Medium-Dependent Adaptation to Nafcillin in Methicillin-Resistant Staphylococcus aureus. | Michael J Salazar, Henrique Machado, Nicholas A Dillon, Hannah Tsunemoto, Richard Szubin, Samira Dahesh, Joseph Pogliano, George Sakoulas, Bernhard O Palsson, Victor Nizet, Adam M Feist | MSystems | 2020-03-31 |
| Executive Summary: Therapeutic Monitoring of Vancomycin for Serious Methicillin-Resistant Staphylococcus aureus Infections: A Revised Consensus Guideline and Review of the American Society of Health-System Pharmacists, the Infectious Diseases Society of America, the Pediatric Infectious Diseases Society, and the Society of Infectious Diseases Pharmacists. | Michael J Rybak, Jennifer Le, Thomas P Lodise, Donald P Levine, John S Bradley, Catherine Liu, Bruce A Mueller, Manjunath P Pai, Annie Wong-Beringer, John C Rotschafer, Keith A Rodvold, Holly D Maples, Benjamin M Lomaestro | Pharmacotherapy | 2020-03-29 |
| Two cases of type-a meningitis within the same week in the same hospital are phylogenetically unrelated but recently exchanged capsule genes. | Yves Terrat, Lauge Farnaes, John Bradley, Nicolas Tromas, B Jesse Shapiro | Microbial Genomics | 2020-03-26 |
| High Protein Intake Is Associated With Histological Disease Activity in Patients With NAFLD. | Sonja Lang, Anna Martin, Fedja Farowski, Hilmar Wisplinghoff, Maria J G T Vehreschild, Jinyuan Liu, Marcin Krawczyk, Angela Nowag, Anne Kretzschmar, Jens Herweg, Bernd Schnabl, Xin M Tu, Frank Lammert, Tobias Goeser, Frank Tacke, Kathrin Heinzer, Philipp Kasper, Hans-Michael Steffen, Münevver Demir | Hepatology Communications | 2020-03-26 |
| COVID-19, Mental Health and Aging: A Need for New Knowledge to Bridge Science and Service. | Ipsit V Vahia, Dan G Blazer, Gwenn S Smith, Jordan F Karp, David C Steffens, Brent P Forester, Rajesh Tampi, Marc Agronin, Dilip V Jeste, Charles F Reynolds | The American Journal Of Geriatric Psychiatry : Official Journal Of The American Association For Geriatric Psychiatry | 2020-03-25 |
| An atlas of human metabolism. | Jonathan L Robinson, Pınar Kocabaş, Hao Wang, Pierre-Etienne Cholley, Daniel Cook, Avlant Nilsson, Mihail Anton, Raphael Ferreira, Iván Domenzain, Virinchi Billa, Angelo Limeta, Alex Hedin, Johan Gustafsson, Eduard J Kerkhoven, L Thomas Svensson, Bernhard O Palsson, Adil Mardinoglu, Lena Hansson, Mathias Uhlén, Jens Nielsen | Science Signaling | 2020-03-24 |
| Fermentable fibers induce rapid macro- and micronutrient depletion in Toll-like receptor 5-deficient mice. | Rachel M Golonka, Beng San Yeoh, Yaqi Li, Piu Saha, Ahmed A Abokor, Xi Cheng, Xia Xiao, Darshan Shimoga Chandrashekar, Sooryanarayana Varambally, David J Gonzalez, A Catharine Ross, Matam Vijay-Kumar | American Journal Of Physiology. Gastrointestinal And Liver Physiology | 2020-03-23 |
| A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing. | David E Gordon, Gwendolyn M Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Matthew J O'Meara, Jeffrey Z Guo, Danielle L Swaney, Tia A Tummino, Ruth Hüttenhain, Robyn M Kaake, Alicia L Richards, Beril Tutuncuoglu, Helene Foussard, Jyoti Batra, Kelsey Haas, Maya Modak, Minkyu Kim, Paige Haas, Benjamin J Polacco, Hannes Braberg, Jacqueline M Fabius, Manon Eckhardt, Margaret Soucheray, Melanie J Bennett, Merve Cakir, Michael J McGregor, Qiongyu Li, Zun Zar Chi Naing, Yuan Zhou, Shiming Peng, Ilsa T Kirby, James E Melnyk, John S Chorba, Kevin Lou, Shizhong A Dai, Wenqi Shen, Ying Shi, Ziyang Zhang, Inigo Barrio-Hernandez, Danish Memon, Claudia Hernandez-Armenta, Christopher J P Mathy, Tina Perica, Kala B Pilla, Sai J Ganesan, Daniel J Saltzberg, Rakesh Ramachandran, Xi Liu, Sara B Rosenthal, Lorenzo Calviello, Srivats Venkataramanan, Yizhu Lin, Stephanie A Wankowicz, Markus Bohn, Raphael Trenker, Janet M Young, Devin Cavero, Joe Hiatt, Theo Roth, Ujjwal Rathore, Advait Subramanian, Julia Noack, Mathieu Hubert, Ferdinand Roesch, Thomas Vallet, Björn Meyer, Kris M White, Lisa Miorin, David Agard, Michael Emerman, Davide Ruggero, Adolfo García-Sastre, Natalia Jura, Mark von Zastrow, Jack Taunton, Olivier Schwartz, Marco Vignuzzi, Christophe d'Enfert, Shaeri Mukherjee, Matt Jacobson, Harmit S Malik, Danica G Fujimori, Trey Ideker, Charles S Craik, Stephen Floor, James S Fraser, John Gross, Andrej Sali, Tanja Kortemme, Pedro Beltrao, Kevan Shokat, Brian K Shoichet, Nevan J Krogan | BioRxiv : The Preprint Server For Biology | 2020-03-22 |
| Tracing the transmission dynamics of HIV-1 CRF55_01B. | Junjie Zai, Haizhou Liu, Zhenzhen Lu, Antoine Chaillon, Davey Smith, Yi Li, Xingguang Li | Scientific Reports | 2020-03-20 |
| A cullin-RING ubiquitin ligase promotes thermotolerance as part of the intracellular pathogen response in . | Johan Panek, Spencer S Gang, Kirthi C Reddy, Robert J Luallen, Amitkumar Fulzele, Eric J Bennett, Emily R Troemel | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-03-19 |
| Alcoholic-Hepatitis, Links to Brain and Microbiome: Mechanisms, Clinical and Experimental Research. | Manuela G Neuman, Helmut Karl Seitz, Samuel W French, Stephen Malnick, Heidekazu Tsukamoto, Lawrence B Cohen, Paula Hoffman, Boris Tabakoff, Michael Fasullo, Laura E Nagy, Pamela L Tuma, Bernd Schnabl, Sebastian Mueller, Jennifer L Groebner, French A Barbara, Jia Yue, Afifiyan Nikko, Mendoza Alejandro, Tillman Brittany, Vitocruz Edward, Kylie Harrall, Laura Saba, Opris Mihai | Biomedicines | 2020-03-18 |
| Multiple-Disease Detection and Classification across Cohorts via Microbiome Search. | Xiaoquan Su, Gongchao Jing, Zheng Sun, Lu Liu, Zhenjiang Xu, Daniel McDonald, Zengbin Wang, Honglei Wang, Antonio Gonzalez, Yufeng Zhang, Shi Huang, Gavin Huttley, Rob Knight, Jian Xu | MSystems | 2020-03-17 |
| Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome. | Bryn C Taylor, Franck Lejzerowicz, Marion Poirel, Justin P Shaffer, Lingjing Jiang, Alexander Aksenov, Nicole Litwin, Gregory Humphrey, Cameron Martino, Sandrine Miller-Montgomery, Pieter C Dorrestein, Patrick Veiga, Se Jin Song, Daniel McDonald, Muriel Derrien, Rob Knight | MSystems | 2020-03-17 |
| Persistent chikungunya arthritis in Roraima, Brazil. | Ramão Luciano Nogueira Hayd, Maony Rodrigues Moreno, Felipe Naveca, Richard Amdur, Karol Suchowiecki, Hugh Watson, Gary S Firestein, Gary Simon, Aileen Y Chang | Clinical Rheumatology | 2020-03-13 |
| Old In Vitro Antimicrobial Breakpoints Are Misleading Stewardship Efforts, Delaying Adoption of Innovative Therapies, and Harming Patients. | Paul G Ambrose, Sujata M Bhavnani, David R Andes, John S Bradley, Robert K Flamm, Jason M Pogue, Ronald N Jones | Open Forum Infectious Diseases | 2020-03-13 |
| Therapeutic Monitoring of Vancomycin for Serious Methicillin-resistant Staphylococcus aureus Infections: A Revised Consensus Guideline and Review by the American Society of Health-system Pharmacists, the Infectious Diseases Society of America, the Pediatric Infectious Diseases Society, and the Society of Infectious Diseases Pharmacists. | Michael J Rybak, Jennifer Le, Thomas P Lodise, Donald P Levine, John S Bradley, Catherine Liu, Bruce A Mueller, Manjunath P Pai, Annie Wong-Beringer, John C Rotschafer, Keith A Rodvold, Holly D Maples, Benjamin Lomaestro | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2020-03-12 |
| Mortality Risk Profiling of Staphylococcus aureus Bacteremia by Multi-omic Serum Analysis Reveals Early Predictive and Pathogenic Signatures. | Jacob M Wozniak, Robert H Mills, Joshua Olson, J R Caldera, Gregory D Sepich-Poore, Marvic Carrillo-Terrazas, Chih-Ming Tsai, Fernando Vargas, Rob Knight, Pieter C Dorrestein, George Y Liu, Victor Nizet, George Sakoulas, Warren Rose, David J Gonzalez | Cell | 2020-03-12 |
| Interleukin-17 Inhibition in Spondyloarthritis Is Associated With Subclinical Gut Microbiome Perturbations and a Distinctive Interleukin-25-Driven Intestinal Inflammation. | Julia Manasson, David S Wallach, Giuliana Guggino, Matthew Stapylton, Michelle H Badri, Gary Solomon, Soumya M Reddy, Roxana Coras, Alexander A Aksenov, Drew R Jones, Parvathy V Girija, Andrea L Neimann, Adriana Heguy, Leopoldo N Segal, Pieter C Dorrestein, Richard Bonneau, Monica Guma, Francesco Ciccia, Carles Ubeda, Jose C Clemente, Jose U Scher | Arthritis & Rheumatology (Hoboken, N.J.) | 2020-03-12 |
| Microbiome analyses of blood and tissues suggest cancer diagnostic approach. | Gregory D Poore, Evguenia Kopylova, Qiyun Zhu, Carolina Carpenter, Serena Fraraccio, Stephen Wandro, Tomasz Kosciolek, Stefan Janssen, Jessica Metcalf, Se Jin Song, Jad Kanbar, Sandrine Miller-Montgomery, Robert Heaton, Rana Mckay, Sandip Pravin Patel, Austin D Swafford, Rob Knight | Nature | 2020-03-11 |
| Siglecs at the Host-Pathogen Interface. | Yung-Chi Chang, Victor Nizet | Advances In Experimental Medicine And Biology | 2020-03-11 |
| Extending the Salinilactone Family. | Christian Schlawis, Tim Harig, Stephanie Ehlers, Dulce G Guillen-Matus, Kaitlin E Creamer, Paul R Jensen, Stefan Schulz | Chembiochem : A European Journal Of Chemical Biology | 2020-03-10 |
| Metabolome-Informed Microbiome Analysis Refines Metadata Classifications and Reveals Unexpected Medication Transfer in Captive Cheetahs. | Julia M Gauglitz, James T Morton, Anupriya Tripathi, Shalisa Hansen, Michele Gaffney, Carolina Carpenter, Kelly C Weldon, Riya Shah, Amy Parampil, Andrea L Fidgett, Austin D Swafford, Rob Knight, Pieter C Dorrestein | MSystems | 2020-03-10 |
| Directed Metabolic Pathway Evolution Enables Functional Pterin-Dependent Aromatic-Amino-Acid Hydroxylation in . | Hao Luo, Lei Yang, Se Hyeuk Kim, Tune Wulff, Adam M Feist, Markus Herrgard, Bernhard Ø Palsson | ACS Synthetic Biology | 2020-03-09 |
| Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice. | Gregory P Donaldson, Wen-Chi Chou, Abigail L Manson, Peter Rogov, Thomas Abeel, James Bochicchio, Dawn Ciulla, Alexandre Melnikov, Peter B Ernst, Hiutung Chu, Georgia Giannoukos, Ashlee M Earl, Sarkis K Mazmanian | Nature Microbiology | 2020-03-09 |
| Chance and necessity in the pleiotropic consequences of adaptation for budding yeast. | Elizabeth R Jerison, Alex N Nguyen Ba, Michael M Desai, Sergey Kryazhimskiy | Nature Ecology & Evolution | 2020-03-09 |
| Understanding the mother-breastmilk-infant "triad". | Lars Bode, Arjun S Raman, Simon H Murch, Nigel C Rollins, Jeffrey I Gordon | Science (New York, N.Y.) | 2020-03-07 |
| Systems Biology Analysis Reveals Eight SLC22 Transporter Subgroups, Including OATs, OCTs, and OCTNs. | Darcy C Engelhart, Jeffry C Granados, Da Shi, Milton H Saier Jr, Michael E Baker, Ruben Abagyan, Sanjay K Nigam | International Journal Of Molecular Sciences | 2020-03-05 |
| Metabolic and genetic basis for auxotrophies in Gram-negative species. | Yara Seif, Kumari Sonal Choudhary, Ying Hefner, Amitesh Anand, Laurence Yang, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-03-04 |
| MEMOTE for standardized genome-scale metabolic model testing. | Christian Lieven, Moritz E Beber, Brett G Olivier, Frank T Bergmann, Meric Ataman, Parizad Babaei, Jennifer A Bartell, Lars M Blank, Siddharth Chauhan, Kevin Correia, Christian Diener, Andreas Dräger, Birgitta E Ebert, Janaka N Edirisinghe, José P Faria, Adam M Feist, Georgios Fengos, Ronan M T Fleming, Beatriz García-Jiménez, Vassily Hatzimanikatis, Wout van Helvoirt, Christopher S Henry, Henning Hermjakob, Markus J Herrgård, Ali Kaafarani, Hyun Uk Kim, Zachary King, Steffen Klamt, Edda Klipp, Jasper J Koehorst, Matthias König, Meiyappan Lakshmanan, Dong-Yup Lee, Sang Yup Lee, Sunjae Lee, Nathan E Lewis, Filipe Liu, Hongwu Ma, Daniel Machado, Radhakrishnan Mahadevan, Paulo Maia, Adil Mardinoglu, Gregory L Medlock, Jonathan M Monk, Jens Nielsen, Lars Keld Nielsen, Juan Nogales, Intawat Nookaew, Bernhard O Palsson, Jason A Papin, Kiran R Patil, Mark Poolman, Nathan D Price, Osbaldo Resendis-Antonio, Anne Richelle, Isabel Rocha, Benjamín J Sánchez, Peter J Schaap, Rahuman S Malik Sheriff, Saeed Shoaie, Nikolaus Sonnenschein, Bas Teusink, Paulo Vilaça, Jon Olav Vik, Judith A H Wodke, Joana C Xavier, Qianqian Yuan, Maksim Zakhartsev, Cheng Zhang | Nature Biotechnology | 2020-03-04 |
| Inducible cell-to-cell signaling for tunable dynamics in microbial communities. | Arianna Miano, Michael J Liao, Jeff Hasty | Nature Communications | 2020-03-04 |
| Reconstruction and Validation of a Genome-Scale Metabolic Model of (iCJ415), a Human Commensal and Opportunistic Pathogen. | Christian S Jensen, Charles J Norsigian, Xin Fang, Xiaohui C Nielsen, Jens Jørgen Christensen, Bernhard O Palsson, Jonathan M Monk | Frontiers In Genetics | 2020-03-03 |
| Expression of Heterologous Gene Improves Glutathione (GSH)-Dependent Antioxidant System and Maintenance of Cellular Redox Status in PCC 7942. | Young-Saeng Kim, Seong-Im Park, Jin-Ju Kim, Joseph S Boyd, Joris Beld, Arnaud Taton, Kyoung-In Lee, Il-Sup Kim, James W Golden, Ho-Sung Yoon | Frontiers In Plant Science | 2020-03-03 |
| Longitudinal survey of microbiome associated with particulate matter in a megacity. | Nan Qin, Peng Liang, Chunyan Wu, Guanqun Wang, Qian Xu, Xiao Xiong, Tingting Wang, Moreno Zolfo, Nicola Segata, Huanlong Qin, Rob Knight, Jack A Gilbert, Ting F Zhu | Genome Biology | 2020-03-03 |
| Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing. | Farnaz Fouladi, Maximilian J Bailey, William B Patterson, Michael Sioda, Ivory C Blakley, Anthony A Fodor, Roshonda B Jones, Zhanghua Chen, Jeniffer S Kim, Frederick Lurmann, Cameron Martino, Rob Knight, Frank D Gilliland, Tanya L Alderete | Environment International | 2020-03-02 |
| Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens. | Jason C Hyun, Erol S Kavvas, Jonathan M Monk, Bernhard O Palsson | PLoS Computational Biology | 2020-03-02 |
| Diet-induced obesity promotes infection by impairment of the innate antimicrobial defense function of dermal adipocyte progenitors. | Ling-Juan Zhang, Christian F Guerrero-Juarez, Stella X Chen, Xiaowei Zhang, Meimei Yin, Fengwu Li, Shuai Wu, Joyce Chen, Min Li, Yingzi Liu, Shang I B Jiang, Tissa Hata, Maksim V Plikus, Richard L Gallo | Science Translational Medicine | 2020-03-02 |
| Role of peribrachial fat as a key determinant of brachial artery dilatation for successful arteriovenous fistula maturation in hemodialysis patients. | Hyung Seok Lee, Mi Jin Park, Sam Youl Yoon, Narae Joo, Young Rim Song, Hyung Jik Kim, Sung Gyun Kim, Victor Nizet, Jwa-Kyung Kim | Scientific Reports | 2020-03-02 |
| Dietary prebiotics alter novel microbial dependent fecal metabolites that improve sleep. | Robert S Thompson, Fernando Vargas, Pieter C Dorrestein, Maciej Chichlowski, Brian M Berg, Monika Fleshner | Scientific Reports | 2020-03-02 |
| SHOGUN: a modular, accurate and scalable framework for microbiome quantification. | Benjamin Hillmann, Gabriel A Al-Ghalith, Robin R Shields-Cutler, Qiyun Zhu, Rob Knight, Dan Knights | Bioinformatics (Oxford, England) | 2020-02-27 |
| Global chemical effects of the microbiome include new bile-acid conjugations. | Robert A Quinn, Alexey V Melnik, Alison Vrbanac, Ting Fu, Kathryn A Patras, Mitchell P Christy, Zsolt Bodai, Pedro Belda-Ferre, Anupriya Tripathi, Lawton K Chung, Michael Downes, Ryan D Welch, Melissa Quinn, Greg Humphrey, Morgan Panitchpakdi, Kelly C Weldon, Alexander Aksenov, Ricardo da Silva, Julian Avila-Pacheco, Clary Clish, Sena Bae, Himel Mallick, Eric A Franzosa, Jason Lloyd-Price, Robert Bussell, Taren Thron, Andrew T Nelson, Mingxun Wang, Eric Leszczynski, Fernando Vargas, Julia M Gauglitz, Michael J Meehan, Emily Gentry, Timothy D Arthur, Alexis C Komor, Orit Poulsen, Brigid S Boland, John T Chang, William J Sandborn, Meerana Lim, Neha Garg, Julie C Lumeng, Ramnik J Xavier, Barbara I Kazmierczak, Ruchi Jain, Marie Egan, Kyung E Rhee, David Ferguson, Manuela Raffatellu, Hera Vlamakis, Gabriel G Haddad, Dionicio Siegel, Curtis Huttenhower, Sarkis K Mazmanian, Ronald M Evans, Victor Nizet, Rob Knight, Pieter C Dorrestein | Nature | 2020-02-26 |
| Fecal Viral Community Responses to High-Fat Diet in Mice. | Anjelique Schulfer, Tasha M Santiago-Rodriguez, Melissa Ly, Joshua M Borin, Jessica Chopyk, Martin J Blaser, David T Pride | MSphere | 2020-02-26 |
| Author Correction: Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity. | Robert C Kaplan, Zheng Wang, Mykhaylo Usyk, Daniela Sotres-Alvarez, Martha L Daviglus, Neil Schneiderman, Gregory A Talavera, Marc D Gellman, Bharat Thyagarajan, Jee-Young Moon, Yoshiki Vázquez-Baeza, Daniel McDonald, Jessica S Williams-Nguyen, Michael C Wu, Kari E North, Justin Shaffer, Christopher C Sollecito, Qibin Qi, Carmen R Isasi, Tao Wang, Rob Knight, Robert D Burk | Genome Biology | 2020-02-25 |
| Heterogeneity and clonal relationships of adaptive immune cells in ulcerative colitis revealed by single-cell analyses. | Brigid S Boland, Zhaoren He, Matthew S Tsai, Jocelyn G Olvera, Kyla D Omilusik, Han G Duong, Eleanor S Kim, Abigail E Limary, Wenhao Jin, J Justin Milner, Bingfei Yu, Shefali A Patel, Tiani L Louis, Tiffani Tysl, Nadia S Kurd, Alexandra Bortnick, Lauren K Quezada, Jad N Kanbar, Ara Miralles, Danny Huylebroeck, Mark A Valasek, Parambir S Dulai, Siddharth Singh, Li-Fan Lu, Jack D Bui, Cornelis Murre, William J Sandborn, Ananda W Goldrath, Gene W Yeo, John T Chang | Science Immunology | 2020-02-25 |
| Phase 2 Study of the Safety, Pharmacokinetics and Efficacy of Ceftaroline Fosamil in Neonates and Very Young Infants With Late-onset Sepsis. | John S Bradley, Gregory G Stone, Phylinda L S Chan, Susan R Raber, Todd Riccobene, Veronica Mas Casullo, Jean Li Yan, Victoria M Hendrick, Jennifer Hammond, Heidi K Leister-Tebbe | The Pediatric Infectious Disease Journal | 2020-02-25 |
| Microbial Colonization of Germ-Free Mice Restores Neointimal Hyperplasia Development After Arterial Injury. | Edmund B Chen, Katherine E Shapiro, Kelly Wun, Thomas Kuntz, Betty R Theriault, Michael J Nooromid, Vanessa A Leone, Katharine G Harris, Qun Jiang, Melanie Spedale, Liqun Xiong, Jack A Gilbert, Eugene B Chang, Karen J Ho | Journal Of The American Heart Association | 2020-02-24 |
| A Convolutional Neural Network-Based Approach for the Rapid Annotation of Molecularly Diverse Natural Products. | Raphael Reher, Hyun Woo Kim, Chen Zhang, Huanru Henry Mao, Mingxun Wang, Louis-Félix Nothias, Andres Mauricio Caraballo-Rodriguez, Evgenia Glukhov, Bahar Teke, Tiago Leao, Kelsey L Alexander, Brendan M Duggan, Ezra L Van Everbroeck, Pieter C Dorrestein, Garrison W Cottrell, William H Gerwick | Journal Of The American Chemical Society | 2020-02-21 |
| Host engulfment pathway controls inflammation in inflammatory bowel disease. | Ibrahim M Sayed, Katherine Suarez, Eileen Lim, Sujay Singh, Matheus Pereira, Stella-Rita Ibeawuchi, Gajanan Katkar, Ying Dunkel, Yash Mittal, Ranajoy Chattopadhyay, Monica Guma, Brigid S Boland, Parambir S Dulai, William J Sandborn, Pradipta Ghosh, Soumita Das | The FEBS Journal | 2020-02-20 |
| Repeated sleep disruption in mice leads to persistent shifts in the fecal microbiome and metabolome. | Samuel J Bowers, Fernando Vargas, Antonio González, Shannon He, Peng Jiang, Pieter C Dorrestein, Rob Knight, Kenneth P Wright, Christopher A Lowry, Monika Fleshner, Martha H Vitaterna, Fred W Turek | PloS One | 2020-02-20 |
| Multi-Omic Profiling of Sponges Reveals Diverse Metabolomic and Microbiome Architectures that Are Non-overlapping with Ecological Neighbors. | Ipsita Mohanty, Sheila Podell, Jason S Biggs, Neha Garg, Eric E Allen, Vinayak Agarwal | Marine Drugs | 2020-02-19 |
| Corrigendum: What's Normal? Microbiomes in Human Milk and Infant Feces Are Related to Each Other but Vary Geographically: The INSPIRE Study. | Kimberly A Lackey, Janet E Williams, Courtney L Meehan, Jessica A Zachek, Elizabeth D Benda, William J Price, James A Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, Debela Gindola K, Linda J Kvist, Gloria E Otoo, Cristina García-Carral, Esther Jiménez, Lorena Ruiz, Juan M Rodríguez, Rossina G Pareja, Lars Bode, Mark A McGuire, Michelle K McGuire | Frontiers In Nutrition | 2020-02-19 |
| Mesoscale All-Atom Influenza Virus Simulations Suggest New Substrate Binding Mechanism. | Jacob D Durrant, Sarah E Kochanek, Lorenzo Casalino, Pek U Ieong, Abigail C Dommer, Rommie E Amaro | ACS Central Science | 2020-02-19 |
| Emerging Priorities for Microbiome Research. | Chad M Cullen, Kawalpreet K Aneja, Sinem Beyhan, Clara E Cho, Stephen Woloszynek, Matteo Convertino, Sophie J McCoy, Yanyan Zhang, Matthew Z Anderson, David Alvarez-Ponce, Ekaterina Smirnova, Lisa Karstens, Pieter C Dorrestein, Hongzhe Li, Ananya Sen Gupta, Kevin Cheung, Jennifer Gloeckner Powers, Zhengqiao Zhao, Gail L Rosen | Frontiers In Microbiology | 2020-02-19 |
| Gut microbiome heritability is nearly universal but environmentally contingent. | Laura Grieneisen, Mauna Dasari, Trevor J Gould, Johannes R Björk, Jean-Christophe Grenier, Vania Yotova, David Jansen, Neil Gottel, Jacob B Gordon, Niki H Learn, Laurence R Gesquiere, Tim L Wango, Raphael S Mututua, J Kinyua Warutere, Long'ida Siodi, Jack A Gilbert, Luis B Barreiro, Susan C Alberts, Jenny Tung, Elizabeth A Archie, Ran Blekhman | Science (New York, N.Y.) | 2020-02-18 |
| Attention/Working Memory, Learning and Memory in Adult Cameroonians: Normative Data, Effects of HIV Infection and Viral Genotype. | Georgette D Kanmogne, Julius Y Fonsah, Anya Umlauf, Jacob Moul, Roland F Doh, Anne M Kengne, Bin Tang, Claude T Tagny, Emilienne Nchindap, Léopoldine Kenmogne, Donald Franklin, Dora M Njamnshi, Dora Mbanya, Alfred K Njamnshi, Robert K Heaton | Journal Of The International Neuropsychological Society : JINS | 2020-02-18 |
| Ecosystem effects of the world's largest invasive animal. | Jonathan B Shurin, Nelson Aranguren-Riaño, Daniel Duque Negro, David Echeverri Lopez, Natalie T Jones, Oscar Laverde-R, Alexander Neu, Adriana Pedroza Ramos | Ecology | 2020-02-18 |
| Engineered immunogen binding to alum adjuvant enhances humoral immunity. | Tyson J Moyer, Yu Kato, Wuhbet Abraham, Jason Y H Chang, Daniel W Kulp, Nicki Watson, Hannah L Turner, Sergey Menis, Robert K Abbott, Jinal N Bhiman, Mariane B Melo, Hayley A Simon, Sara Herrera-De la Mata, Shu Liang, Gregory Seumois, Yash Agarwal, Na Li, Dennis R Burton, Andrew B Ward, William R Schief, Shane Crotty, Darrell J Irvine | Nature Medicine | 2020-02-17 |
| Advances in non-invasive assessment of hepatic fibrosis. | Rohit Loomba, Leon A Adams | Gut | 2020-02-17 |
| Precision medicine in perinatal depression in light of the human microbiome. | Beatriz Peñalver Bernabé, Pauline M Maki, Shannon M Dowty, Mariana Salas, Lauren Cralle, Zainab Shah, Jack A Gilbert | Psychopharmacology | 2020-02-17 |
| Shared genetic risk between eating disorder- and substance-use-related phenotypes: Evidence from genome-wide association studies. | Melissa A Munn-Chernoff, Emma C Johnson, Yi-Ling Chou, Jonathan R I Coleman, Laura M Thornton, Raymond K Walters, Zeynep Yilmaz, Jessica H Baker, Christopher Hübel, Scott Gordon, Sarah E Medland, Hunna J Watson, Héléna A Gaspar, Julien Bryois, Anke Hinney, Virpi M Leppä, Manuel Mattheisen, Stephan Ripke, Shuyang Yao, Paola Giusti-Rodríguez, Ken B Hanscombe, Roger A H Adan, Lars Alfredsson, Tetsuya Ando, Ole A Andreassen, Wade H Berrettini, Ilka Boehm, Claudette Boni, Vesna Boraska Perica, Katharina Buehren, Roland Burghardt, Matteo Cassina, Sven Cichon, Maurizio Clementi, Roger D Cone, Philippe Courtet, Scott Crow, James J Crowley, Unna N Danner, Oliver S P Davis, Martina de Zwaan, George Dedoussis, Daniela Degortes, Janiece E DeSocio, Danielle M Dick, Dimitris Dikeos, Christian Dina, Monika Dmitrzak-Weglarz, Elisa Docampo, Laramie E Duncan, Karin Egberts, Stefan Ehrlich, Geòrgia Escaramís, Tõnu Esko, Xavier Estivill, Anne Farmer, Angela Favaro, Fernando Fernández-Aranda, Manfred M Fichter, Krista Fischer, Manuel Föcker, Lenka Foretova, Andreas J Forstner, Monica Forzan, Christopher S Franklin, Steven Gallinger, Ina Giegling, Johanna Giuranna, Fragiskos Gonidakis, Philip Gorwood, Monica Gratacos Mayora, Sébastien Guillaume, Yiran Guo, Hakon Hakonarson, Konstantinos Hatzikotoulas, Joanna Hauser, Johannes Hebebrand, Sietske G Helder, Stefan Herms, Beate Herpertz-Dahlmann, Wolfgang Herzog, Laura M Huckins, James I Hudson, Hartmut Imgart, Hidetoshi Inoko, Vladimir Janout, Susana Jiménez-Murcia, Antonio Julià, Gursharan Kalsi, Deborah Kaminská, Leila Karhunen, Andreas Karwautz, Martien J H Kas, James L Kennedy, Anna Keski-Rahkonen, Kirsty Kiezebrink, Youl-Ri Kim, Kelly L Klump, Gun Peggy S Knudsen, Maria C La Via, Stephanie Le Hellard, Robert D Levitan, Dong Li, Lisa Lilenfeld, Bochao Danae Lin, Jolanta Lissowska, Jurjen Luykx, Pierre J Magistretti, Mario Maj, Katrin Mannik, Sara Marsal, Christian R Marshall, Morten Mattingsdal, Sara McDevitt, Peter McGuffin, Andres Metspalu, Ingrid Meulenbelt, Nadia Micali, Karen Mitchell, Alessio Maria Monteleone, Palmiero Monteleone, Benedetta Nacmias, Marie Navratilova, Ioanna Ntalla, Julie K O'Toole, Roel A Ophoff, Leonid Padyukov, Aarno Palotie, Jacques Pantel, Hana Papezova, Dalila Pinto, Raquel Rabionet, Anu Raevuori, Nicolas Ramoz, Ted Reichborn-Kjennerud, Valdo Ricca, Samuli Ripatti, Franziska Ritschel, Marion Roberts, Alessandro Rotondo, Dan Rujescu, Filip Rybakowski, Paolo Santonastaso, André Scherag, Stephen W Scherer, Ulrike Schmidt, Nicholas J Schork, Alexandra Schosser, Jochen Seitz, Lenka Slachtova, P Eline Slagboom, Margarita C T Slof-Op't Landt, Agnieszka Slopien, Sandro Sorbi, Beata Świątkowska, Jin P Szatkiewicz, Ioanna Tachmazidou, Elena Tenconi, Alfonso Tortorella, Federica Tozzi, Janet Treasure, Artemis Tsitsika, Marta Tyszkiewicz-Nwafor, Konstantinos Tziouvas, Annemarie A van Elburg, Eric F van Furth, Gudrun Wagner, Esther Walton, Elisabeth Widen, Eleftheria Zeggini, Stephanie Zerwas, Stephan Zipfel, Andrew W Bergen, Joseph M Boden, Harry Brandt, Steven Crawford, Katherine A Halmi, L John Horwood, Craig Johnson, Allan S Kaplan, Walter H Kaye, James Mitchell, Catherine M Olsen, John F Pearson, Nancy L Pedersen, Michael Strober, Thomas Werge, David C Whiteman, D Blake Woodside, Jakob Grove, Anjali K Henders, Janne T Larsen, Richard Parker, Liselotte V Petersen, Jennifer Jordan, Martin A Kennedy, Andreas Birgegård, Paul Lichtenstein, Claes Norring, Mikael Landén, Preben Bo Mortensen, Renato Polimanti, Jeanette N McClintick, Amy E Adkins, Fazil Aliev, Silviu-Alin Bacanu, Anthony Batzler, Sarah Bertelsen, Joanna M Biernacka, Tim B Bigdeli, Li-Shiun Chen, Toni-Kim Clarke, Franziska Degenhardt, Anna R Docherty, Alexis C Edwards, Jerome C Foo, Louis Fox, Josef Frank, Laura M Hack, Annette M Hartmann, Sarah M Hartz, Stefanie Heilmann-Heimbach, Colin Hodgkinson, Per Hoffmann, Jouke-Jan Hottenga, Bettina Konte, Jari Lahti, Marius Lahti-Pulkkinen, Dongbing Lai, Lannie Ligthart, Anu Loukola, Brion S Maher, Hamdi Mbarek, Andrew M McIntosh, Matthew B McQueen, Jacquelyn L Meyers, Yuri Milaneschi, Teemu Palviainen, Roseann E Peterson, Euijung Ryu, Nancy L Saccone, Jessica E Salvatore, Sandra Sanchez-Roige, Melanie Schwandt, Richard Sherva, Fabian Streit, Jana Strohmaier, Nathaniel Thomas, Jen-Chyong Wang, Bradley T Webb, Robbee Wedow, Leah Wetherill, Amanda G Wills, Hang Zhou, Jason D Boardman, Danfeng Chen, Doo-Sup Choi, William E Copeland, Robert C Culverhouse, Norbert Dahmen, Louisa Degenhardt, Benjamin W Domingue, Mark A Frye, Wolfgang Gäebel, Caroline Hayward, Marcus Ising, Margaret Keyes, Falk Kiefer, Gabriele Koller, John Kramer, Samuel Kuperman, Susanne Lucae, Michael T Lynskey, Wolfgang Maier, Karl Mann, Satu Männistö, Bertram Müller-Myhsok, Alison D Murray, John I Nurnberger, Ulrich Preuss, Katri Räikkönen, Maureen D Reynolds, Monika Ridinger, Norbert Scherbaum, Marc A Schuckit, Michael Soyka, Jens Treutlein, Stephanie H Witt, Norbert Wodarz, Peter Zill, Daniel E Adkins, Dorret I Boomsma, Laura J Bierut, Sandra A Brown, Kathleen K Bucholz, E Jane Costello, Harriet de Wit, Nancy Diazgranados, Johan G Eriksson, Lindsay A Farrer, Tatiana M Foroud, Nathan A Gillespie, Alison M Goate, David Goldman, Richard A Grucza, Dana B Hancock, Kathleen Mullan Harris, Victor Hesselbrock, John K Hewitt, Christian J Hopfer, William G Iacono, Eric O Johnson, Victor M Karpyak, Kenneth S Kendler, Henry R Kranzler, Kenneth Krauter, Penelope A Lind, Matt McGue, James MacKillop, Pamela A F Madden, Hermine H Maes, Patrik K E Magnusson, Elliot C Nelson, Markus M Nöthen, Abraham A Palmer, Brenda W J H Penninx, Bernice Porjesz, John P Rice, Marcella Rietschel, Brien P Riley, Richard J Rose, Pei-Hong Shen, Judy Silberg, Michael C Stallings, Ralph E Tarter, Michael M Vanyukov, Scott Vrieze, Tamara L Wall, John B Whitfield, Hongyu Zhao, Benjamin M Neale, Tracey D Wade, Andrew C Heath, Grant W Montgomery, Nicholas G Martin, Patrick F Sullivan, Jaakko Kaprio, Gerome Breen, Joel Gelernter, Howard J Edenberg, Cynthia M Bulik, Arpana Agrawal | Addiction Biology | 2020-02-16 |
| Differing salivary microbiome diversity, community and diurnal rhythmicity in association with affective state and peripheral inflammation in adults. | Jordan N Kohn, Tomasz Kosciolek, Clarisse Marotz, Gajender Aleti, Robert N Guay-Ross, Seong-Hun Hong, Shalisa Hansen, Austin Swafford, Rob Knight, Suzi Hong | Brain, Behavior, And Immunity | 2020-02-14 |
| Thirty complete Streptomyces genome sequences for mining novel secondary metabolite biosynthetic gene clusters. | Namil Lee, Woori Kim, Soonkyu Hwang, Yongjae Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | Scientific Data | 2020-02-13 |
| Circadian Rhythms in the Pathogenesis and Treatment of Fatty Liver Disease. | Anand R Saran, Shravan Dave, Amir Zarrinpar | Gastroenterology | 2020-02-13 |
| Human Skin, Oral, and Gut Microbiomes Predict Chronological Age. | Shi Huang, Niina Haiminen, Anna-Paola Carrieri, Rebecca Hu, Lingjing Jiang, Laxmi Parida, Baylee Russell, Celeste Allaband, Amir Zarrinpar, Yoshiki Vázquez-Baeza, Pedro Belda-Ferre, Hongwei Zhou, Ho-Cheol Kim, Austin D Swafford, Rob Knight, Zhenjiang Zech Xu | MSystems | 2020-02-11 |
| A gut bacterial amyloid promotes α-synuclein aggregation and motor impairment in mice. | Timothy R Sampson, Collin Challis, Neha Jain, Anastasiya Moiseyenko, Mark S Ladinsky, Gauri G Shastri, Taren Thron, Brittany D Needham, Istvan Horvath, Justine W Debelius, Stefan Janssen, Rob Knight, Pernilla Wittung-Stafshede, Viviana Gradinaru, Matthew Chapman, Sarkis K Mazmanian | ELife | 2020-02-11 |
| Cathelicidin preserves intestinal barrier function in polymicrobial sepsis. | Jeffery Ho, Hung Chan, Yonghao Liang, Xiaodong Liu, Lin Zhang, Qing Li, Yuchen Zhang, Judeng Zeng, Felix N Ugwu, Idy H T Ho, Wei Hu, Johnny C W Yau, Sunny H Wong, Wai Tat Wong, Lowell Ling, Chi H Cho, Richard L Gallo, Tony Gin, Gary Tse, Jun Yu, Matthew T V Chan, Czarina C H Leung, William K K Wu | Critical Care (London, England) | 2020-02-10 |
| Cruel to Be Kind: Epithelial, Microbial, and Immune Cell Interactions in Gastrointestinal Cancers. | Shabnam Shalapour, Michael Karin | Annual Review Of Immunology | 2020-02-10 |
| De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences. | Nikolaos Vakirlis, Omer Acar, Brian Hsu, Nelson Castilho Coelho, S Branden Van Oss, Aaron Wacholder, Kate Medetgul-Ernar, Ray W Bowman, Cameron P Hines, John Iannotta, Saurin Bipin Parikh, Aoife McLysaght, Carlos J Camacho, Allyson F O'Donnell, Trey Ideker, Anne-Ruxandra Carvunis | Nature Communications | 2020-02-07 |
| Patterns of Oral Microbiota Diversity in Adults and Children: A Crowdsourced Population Study. | Zachary M Burcham, Nicole L Garneau, Sarah S Comstock, Robin M Tucker, Rob Knight, Jessica L Metcalf, | Scientific Reports | 2020-02-07 |
| 3M-052, a synthetic TLR-7/8 agonist, induces durable HIV-1 envelope-specific plasma cells and humoral immunity in nonhuman primates. | Sudhir Pai Kasturi, Mohammed Ata Ur Rasheed, Colin Havenar-Daughton, Mathew Pham, Traci Legere, Zarpheen Jinnah Sher, Yevgeny Kovalenkov, Sanjeev Gumber, Jessica Y Huang, Raphael Gottardo, William Fulp, Alicia Sato, Sheetal Sawant, Sherry Stanfield-Oakley, Nicole Yates, Celia LaBranche, S Munir Alam, Georgia Tomaras, Guido Ferrari, David Montefiori, Jens Wrammert, Francois Villinger, Mark Tomai, John Vasilakos, Christopher B Fox, Steven G Reed, Barton F Haynes, Shane Crotty, Rafi Ahmed, Bali Pulendran | Science Immunology | 2020-01-30 |
| HIV/HCV therapy with ledipasvir/sofosbuvir after randomized switch to emtricitabine-tenofovir alafenamide-based single-tablet regimens. | Gregory D Huhn, Moti Ramgopal, Mamta K Jain, Federico Hinestrosa, David M Asmuth, Jihad Slim, Deborah Goldstein, Shauna Applin, Julie H Ryu, Shuping Jiang, Stephanie Cox, Moupali Das, Thai Nguyen-Cleary, David Piontkowsky, Bill Guyer, Lorenzo Rossaro, Richard H Haubrich | PloS One | 2020-01-29 |
| Onion-like Multifunctional Microtrap Vehicles for Attraction-Trapping-Destruction of Biological Threats. | Fernando Soto, Daniel Kupor, Miguel Angel Lopez-Ramirez, Fanan Wei, Emil Karshalev, Songsong Tang, Farshad Tehrani, Joseph Wang | Angewandte Chemie (International Ed. In English) | 2020-01-29 |
| Tutuilamides A-C: Vinyl-Chloride-Containing Cyclodepsipeptides from Marine Cyanobacteria with Potent Elastase Inhibitory Properties. | Lena Keller, Kirley Marques Canuto, Chenxi Liu, Brian M Suzuki, Jehad Almaliti, Asfandyar Sikandar, C Benjamin Naman, Evgenia Glukhov, Danmeng Luo, Brendan M Duggan, Hendrik Luesch, Jesko Koehnke, Anthony J O'Donoghue, William H Gerwick | ACS Chemical Biology | 2020-01-28 |
| Organ-level protein networks as a reference for the host effects of the microbiome. | Robert H Mills, Jacob M Wozniak, Alison Vrbanac, Anaamika Campeau, Benoit Chassaing, Andrew Gewirtz, Rob Knight, David J Gonzalez | Genome Research | 2020-01-28 |
| Iron competition triggers antibiotic biosynthesis in Streptomyces coelicolor during coculture with Myxococcus xanthus. | Namil Lee, Woori Kim, Jinkyoo Chung, Yongjae Lee, Suhyung Cho, Kyoung-Soon Jang, Sun Chang Kim, Bernhard Palsson, Byung-Kwan Cho | The ISME Journal | 2020-01-28 |
| STATR: A simple analysis pipeline of Ribo-Seq in bacteria. | Donghui Choe, Bernhard Palsson, Byung-Kwan Cho | Journal Of Microbiology (Seoul, Korea) | 2020-01-28 |
| Experimental approaches to tracking mobile genetic elements in microbial communities. | Christina C Saak, Cong B Dinh, Rachel J Dutton | FEMS Microbiology Reviews | 2020-01-24 |
| Genome-scale transcriptional dynamics and environmental biosensing. | Garrett Graham, Nicholas Csicsery, Elizabeth Stasiowski, Gregoire Thouvenin, William H Mather, Michael Ferry, Scott Cookson, Jeff Hasty | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-01-23 |
| Cytolysin-positive Enterococcus faecalis is not increased in patients with non-alcoholic steatohepatitis. | Sonja Lang, Münevver Demir, Yi Duan, Anna Martin, Bernd Schnabl | Liver International : Official Journal Of The International Association For The Study Of The Liver | 2020-01-23 |
| Identification of a Human Skin Commensal Bacterium that Selectively Kills Cutibacterium acnes. | Alan M O'Neill, Teruaki Nakatsuji, Asumi Hayachi, Michael R Williams, Robert H Mills, David J Gonzalez, Richard L Gallo | The Journal Of Investigative Dermatology | 2020-01-23 |
| Comparative Analysis of Gut Microbiota Following Changes in Training Volume Among Swimmers. | Jarrad Timothy Hampton-Marcell, Tifani W Eshoo, Marc D Cook, Jack A Gilbert, Craig A Horswill, Rachel Poretsky | International Journal Of Sports Medicine | 2020-01-23 |
| Dynamic post-translational modification profiling of -infected primary macrophages. | Jonathan M Budzik, Danielle L Swaney, David Jimenez-Morales, Jeffrey R Johnson, Nicholas E Garelis, Teresa Repasy, Allison W Roberts, Lauren M Popov, Trevor J Parry, Dexter Pratt, Trey Ideker, Nevan J Krogan, Jeffery S Cox | ELife | 2020-01-17 |
| Reinvigorating NIH Grant Peer Review. | Shane Crotty, Catherine Blish, Ken Cadwell, Hongbo Chi, Ananda Goldrath, Douglas Green, Susan M Kaech, Matthew Krummel, Marion Pepper, Carla V Rothlin, E John Wherry, | Immunity | 2020-01-16 |
| A dual role for hepatocyte-intrinsic canonical NF-κB signaling in virus control. | Sukumar Namineni, Tracy O'Connor, Suzanne Faure-Dupuy, Pål Johansen, Tobias Riedl, Kaijing Liu, Haifeng Xu, Indrabahadur Singh, Prashant Shinde, Fanghui Li, Aleksandra Pandyra, Piyush Sharma, Marc Ringelhan, Andreas Muschaweckh, Katharina Borst, Patrick Blank, Sandra Lampl, Katharina Neuhaus, David Durantel, Rayan Farhat, Achim Weber, Daniela Lenggenhager, Thomas M Kündig, Peter Staeheli, Ulrike Protzer, Dirk Wohlleber, Bernhard Holzmann, Marco Binder, Kai Breuhahn, Lisa Mareike Assmus, Jacob Nattermann, Zeinab Abdullah, Maude Rolland, Emmanuel Dejardin, Philipp A Lang, Karl S Lang, Michael Karin, Julie Lucifora, Ulrich Kalinke, Percy A Knolle, Mathias Heikenwalder | Journal Of Hepatology | 2020-01-15 |
| Macrofilaricidal Benzimidazole-Benzoxaborole Hybrids as an Approach to the Treatment of River Blindness: Part 1. Amide Linked Analogs. | Tsutomu Akama, Yvonne R Freund, Pamela W Berry, David S Carter, Eric E Easom, Kurt Jarnagin, Christopher S Lunde, Jacob J Plattner, Fernando Rock, Rianna Stefanakis, Chelsea Fischer, Christina A Bulman, Kee Chong Lim, Brian M Suzuki, Nancy Tricoche, Abdelmoneim Mansour, Utami DiCosty, Scott McCall, Ben Carson, John W McCall, James McKerrow, Marc P Hübner, Sabine Specht, Achim Hoerauf, Sara Lustigman, Judy A Sakanari, Robert T Jacobs | ACS Infectious Diseases | 2020-01-14 |
| Guanitoxin, re-naming a cyanobacterial organophosphate toxin. | Marli Fátima Fiore, Stella Thomaz de Lima, Wayne W Carmichael, Shaun M K McKinnie, Jonathan R Chekan, Bradley S Moore | Harmful Algae | 2020-01-14 |
| Flower-like patterns in multi-species bacterial colonies. | Liyang Xiong, Yuansheng Cao, Robert Cooper, Wouter-Jan Rappel, Jeff Hasty, Lev Tsimring | ELife | 2020-01-14 |
| Microbial communities from Arctic marine sediments respond slowly to methane addition during ex situ enrichments. | Scott Klasek, Marta E Torres, Douglas H Bartlett, Madeline Tyler, Wei-Li Hong, Frederick Colwell | Environmental Microbiology | 2020-01-13 |
| Scaffold and Parasite Hopping: Discovery of New Protozoal Proliferation Inhibitors. | Baljinder Singh, Jean A Bernatchez, Laura-Isobel McCall, Claudia M Calvet, Jasmin Ackermann, Julia M Souza, Diane Thomas, Everton M Silva, Kelly A Bachovchin, Dana M Klug, Hitesh B Jalani, Seema Bag, Melissa J Buskes, Susan E Leed, Norma E Roncal, Erica C Penn, Jessey Erath, Ana Rodriguez, Richard J Sciotti, Robert F Campbell, James McKerrow, Jair L Siqueira-Neto, Lori Ferrins, Michael P Pollastri | ACS Medicinal Chemistry Letters | 2020-01-10 |
| Microbial Diversity in Clinical Microbiome Studies: Sample Size and Statistical Power Considerations. | Climent Casals-Pascual, Antonio González, Yoshiki Vázquez-Baeza, Se Jin Song, Lingjing Jiang, Rob Knight | Gastroenterology | 2020-01-10 |
| Cariogenic Produces Tetramic Acid Strain-Specific Antibiotics That Impair Commensal Colonization. | Xiaoyu Tang, Yuta Kudo, Jonathon L Baker, Sandra LaBonte, Peter A Jordan, Shaun M K McKinnie, Jian Guo, Tao Huan, Bradley S Moore, Anna Edlund | ACS Infectious Diseases | 2020-01-10 |
| HORMA Domain Proteins and a Trip13-like ATPase Regulate Bacterial cGAS-like Enzymes to Mediate Bacteriophage Immunity. | Qiaozhen Ye, Rebecca K Lau, Ian T Mathews, Erica A Birkholz, Jeramie D Watrous, Camillia S Azimi, Joe Pogliano, Mohit Jain, Kevin D Corbett | Molecular Cell | 2020-01-10 |
| Structure and Mechanism of a Cyclic Trinucleotide-Activated Bacterial Endonuclease Mediating Bacteriophage Immunity. | Rebecca K Lau, Qiaozhen Ye, Erica A Birkholz, Kyle R Berg, Lucas Patel, Ian T Mathews, Jeramie D Watrous, Kaori Ego, Aaron T Whiteley, Brianna Lowey, John J Mekalanos, Philip J Kranzusch, Mohit Jain, Joe Pogliano, Kevin D Corbett | Molecular Cell | 2020-01-10 |
| The Fungal Pathogen Promotes Bladder Colonization of Group B . | Samuel R Shing, Anissa R Ramos, Kathryn A Patras, Angelica M Riestra, Sinead McCabe, Victor Nizet, Alison Coady | Frontiers In Cellular And Infection Microbiology | 2020-01-10 |
| Bacteriophage lambda overcomes a perturbation in its host-viral genetic network through mutualism and evolution of life history traits. | Animesh Gupta, Anechelle N Soto, Sarah J Medina, Katherine L Petrie, Justin R Meyer | Evolution; International Journal Of Organic Evolution | 2020-01-09 |
| Upon microbial challenge, human neutrophils undergo rapid changes in nuclear architecture and chromatin folding to orchestrate an immediate inflammatory gene program. | Matthew Denholtz, Yina Zhu, Zhaoren He, Hanbin Lu, Takeshi Isoda, Simon Döhrmann, Victor Nizet, Cornelis Murre | Genes & Development | 2020-01-09 |
| Breastmilk Lipids and Oligosaccharides Influence Branched Short-Chain Fatty Acid Concentrations in Infants with Excessive Weight Gain. | Ceyda Tugba Pekmez, Melanie Wange Larsson, Mads Vendelbo Lind, Natalia Vazquez Manjarrez, Chloe Yonemitsu, Anni Larnkjaer, Lars Bode, Christian Mølgaard, Kim F Michaelsen, Lars Ove Dragsted | Molecular Nutrition & Food Research | 2020-01-07 |
| Ceftolozane/Tazobactam in Neonates and Young Infants: The Challenges of Collecting Pharmacokinetics and Safety Data in This Vulnerable Patient Population. | Jocelyn Y Ang, Antonio Arrieta, John S Bradley, Zufei Zhang, Brian Yu, Matthew L Rizk, Matthew G Johnson, Elizabeth G Rhee | American Journal Of Perinatology | 2020-01-07 |
| Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats. | Se Jin Song, Jon G Sanders, Frédéric Delsuc, Jessica Metcalf, Katherine Amato, Michael W Taylor, Florent Mazel, Holly L Lutz, Kevin Winker, Gary R Graves, Gregory Humphrey, Jack A Gilbert, Shannon J Hackett, Kevin P White, Heather R Skeen, Sarah M Kurtis, Jack Withrow, Thomas Braile, Matthew Miller, Kevin G McCracken, James M Maley, Vanessa O Ezenwa, Allison Williams, Jessica M Blanton, Valerie J McKenzie, Rob Knight | MBio | 2020-01-07 |
| The Caenorhabditis elegans RIG-I Homolog DRH-1 Mediates the Intracellular Pathogen Response upon Viral Infection. | Jessica N Sowa, Hongbing Jiang, Lakshmi Somasundaram, Eillen Tecle, Guorong Xu, David Wang, Emily R Troemel | Journal Of Virology | 2020-01-06 |
| Mass spectrometry searches using MASST. | Mingxun Wang, Alan K Jarmusch, Fernando Vargas, Alexander A Aksenov, Julia M Gauglitz, Kelly Weldon, Daniel Petras, Ricardo da Silva, Robert Quinn, Alexey V Melnik, Justin J J van der Hooft, Andrés Mauricio Caraballo-Rodríguez, Louis Felix Nothias, Christine M Aceves, Morgan Panitchpakdi, Elizabeth Brown, Francesca Di Ottavio, Nicole Sikora, Emmanuel O Elijah, Lara Labarta-Bajo, Emily C Gentry, Shabnam Shalapour, Kathleen E Kyle, Sara P Puckett, Jeramie D Watrous, Carolina S Carpenter, Amina Bouslimani, Madeleine Ernst, Austin D Swafford, Elina I Zúñiga, Marcy J Balunas, Jonathan L Klassen, Rohit Loomba, Rob Knight, Nuno Bandeira, Pieter C Dorrestein | Nature Biotechnology | 2020-01-03 |
| miR-155 promotes T reg cell development by safeguarding medullary thymic epithelial cell maturation. | Jiayi Dong, Lindsey M Warner, Ling-Li Lin, Mei-Chi Chen, Ryan M O'Connell, Li-Fan Lu | The Journal Of Experimental Medicine | 2019-12-31 |
| Single-Cell Transcriptomics Reveal a Correlation between Genome Architecture and Gene Family Evolution in Ciliates. | Ying Yan, Xyrus X Maurer-Alcalá, Rob Knight, Sergei L Kosakovsky Pond, Laura A Katz | MBio | 2019-12-24 |
| Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B. | Ke Shi, Özlem Demir, Michael A Carpenter, Surajit Banerjee, Daniel A Harki, Rommie E Amaro, Reuben S Harris, Hideki Aihara | FASEB BioAdvances | 2019-12-24 |
| The emergence of microbiome centres. | Jennifer B H Martiny, Katrine L Whiteson, Brendan J M Bohannan, Lawrence A David, Nicole A Hynson, Margaret McFall-Ngai, John F Rawls, Thomas M Schmidt, Zaid Abdo, Martin J Blaser, Seth Bordenstein, Christian Bréchot, Carolee T Bull, Pieter Dorrestein, Jonathan A Eisen, Ferran Garcia-Pichel, Jack Gilbert, Kirsten S Hofmockel, Mary L Holtz, Rob Knight, David B Mark Welch, Daniel McDonald, Barbara Methé, Nigel J Mouncey, Noel T Mueller, Catherine A Pfister, Lita Proctor, Joel L Sachs | Nature Microbiology | 2019-12-21 |
| Systems-level analysis of NalD mutation, a recurrent driver of rapid drug resistance in acute Pseudomonas aeruginosa infection. | Jinyuan Yan, Henri Estanbouli, Chen Liao, Wook Kim, Jonathan M Monk, Rayees Rahman, Mini Kamboj, Bernhard O Palsson, Weigang Qiu, Joao B Xavier | PLoS Computational Biology | 2019-12-20 |
| Microbial biogeography and ecology of the mouth and implications for periodontal diseases. | Diana M Proctor, Katie M Shelef, Antonio Gonzalez, Clara L Davis, Les Dethlefsen, Adam R Burns, Peter M Loomer, Gary C Armitage, Mark I Ryder, Meredith E Millman, Rob Knight, Susan P Holmes, David A Relman | Periodontology 2000 | 2019-12-19 |
| Enzyme-powered Janus platelet cell robots for active and targeted drug delivery. | Songsong Tang, Fangyu Zhang, Hua Gong, Fanan Wei, Jia Zhuang, Emil Karshalev, Berta Esteban-Fernández de Ávila, Chuying Huang, Zhidong Zhou, Zhengxing Li, Lu Yin, Haifeng Dong, Ronnie H Fang, Xueji Zhang, Liangfang Zhang, Joseph Wang | Science Robotics | 2019-12-18 |
| De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments. | Bahar Behsaz, Hosein Mohimani, Alexey Gurevich, Andrey Prjibelski, Mark Fisher, Fernando Vargas, Larry Smarr, Pieter C Dorrestein, Joshua S Mylne, Pavel A Pevzner | Cell Systems | 2019-12-18 |
| Azithromycin Exerts Bactericidal Activity and Enhances Innate Immune Mediated Killing of MDR . | Erlinda R Ulloa, Armin Kousha, Hannah Tsunemoto, Joe Pogliano, Carmelo Licitra, John J LiPuma, George Sakoulas, Victor Nizet, Monika Kumaraswamy | Infectious Microbes & Diseases | 2019-12-17 |
| Structure of galactarate dehydratase, a new fold in an enolase involved in bacterial fitness after antibiotic treatment. | Monica Rosas-Lemus, George Minasov, Ludmilla Shuvalova, Zdzislaw Wawrzak, Olga Kiryukhina, Nathan Mih, Lukasz Jaroszewski, Bernhard Palsson, Adam Godzik, Karla J F Satchell | Protein Science : A Publication Of The Protein Society | 2019-12-17 |
| Profiling the effect of nafcillin on HA-MRSA D712 using bacteriological and physiological media. | Akanksha Rajput, Saugat Poudel, Hannah Tsunemoto, Michael Meehan, Richard Szubin, Connor A Olson, Anne Lamsa, Yara Seif, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M Monk, Pieter C Dorrestein, Rob Knight, Victor Nizet, Bernhard O Palsson, Adam M Feist, Joe Pogliano | Scientific Data | 2019-12-17 |
| A bacterial gene-drive system efficiently edits and inactivates a high copy number antibiotic resistance locus. | J Andrés Valderrama, Surashree S Kulkarni, Victor Nizet, Ethan Bier | Nature Communications | 2019-12-16 |
| MiR-23~27~24-mediated control of humoral immunity reveals a TOX-driven regulatory circuit in follicular helper T cell differentiation. | Cheng-Jang Wu, Sunglim Cho, Hsi-Yuan Huang, Chun-Hao Lu, Jasmin Russ, Leilani O Cruz, Flavia Franco da Cunha, Mei-Chi Chen, Ling-Li Lin, Lindsey M Warner, Hsin-Kai Liao, Daniel T Utzschneider, Sara Quon, Jacqueline Berner, Niels Olsen Saraiva Camara, Dietmar Zehn, Juan Carlos Izpisua Belmonte, Li-Chen Chen, Shiang-Fu Huang, Ming-Ling Kuo, Li-Fan Lu | Science Advances | 2019-12-11 |
| The Microbiome and Its Potential for Pharmacology. | Aries Chavira, Pedro Belda-Ferre, Tomasz Kosciolek, Farhana Ali, Pieter C Dorrestein, Rob Knight | Handbook Of Experimental Pharmacology | 2019-12-11 |
| Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli. | Bin Du, Laurence Yang, Colton J Lloyd, Xin Fang, Bernhard O Palsson | PLoS Computational Biology | 2019-12-06 |
| Immune Dysregulation in the Tonsillar Microenvironment of Periodic Fever, Aphthous Stomatitis, Pharyngitis, Adenitis (PFAPA) Syndrome. | Irene Luu, Anukriti Sharma, Marisela Guaderrama, Michelle Peru, Javan Nation, Nathan Page, Daniela Carvalho, Anthony Magit, Wen Jiang, Shelby Leuin, Morgan Bliss, Marcella Bothwell, Matthew Brigger, Donald Kearns, Robert Newbury, Seth Pransky, Jack A Gilbert, Lori Broderick | Journal Of Clinical Immunology | 2019-12-05 |
| Siglec-14 Enhances NLRP3-Inflammasome Activation in Macrophages. | Chih-Ming Tsai, Angelica M Riestra, Syed Raza Ali, Jerry J Fong, Janet Z Liu, Gillian Hughes, Ajit Varki, Victor Nizet | Journal Of Innate Immunity | 2019-12-05 |
| The Escherichia coli transcriptome mostly consists of independently regulated modules. | Anand V Sastry, Ye Gao, Richard Szubin, Ying Hefner, Sibei Xu, Donghyuk Kim, Kumari Sonal Choudhary, Laurence Yang, Zachary A King, Bernhard O Palsson | Nature Communications | 2019-12-04 |
| Type I IFNs and CD8 T cells increase intestinal barrier permeability after chronic viral infection. | Lara Labarta-Bajo, Steven P Nilsen, Gregory Humphrey, Tara Schwartz, Karenina Sanders, Austin Swafford, Rob Knight, Jerrold R Turner, Elina I Zúñiga | The Journal Of Experimental Medicine | 2019-12-03 |
| Statistics of correlated percolation in a bacterial community. | Xiaoling Zhai, Joseph W Larkin, Kaito Kikuchi, Samuel E Redford, Ushasi Roy, Gürol M Süel, Andrew Mugler | PLoS Computational Biology | 2019-12-02 |
| Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea. | Qiyun Zhu, Uyen Mai, Wayne Pfeiffer, Stefan Janssen, Francesco Asnicar, Jon G Sanders, Pedro Belda-Ferre, Gabriel A Al-Ghalith, Evguenia Kopylova, Daniel McDonald, Tomasz Kosciolek, John B Yin, Shi Huang, Nimaichand Salam, Jian-Yu Jiao, Zijun Wu, Zhenjiang Z Xu, Kalen Cantrell, Yimeng Yang, Erfan Sayyari, Maryam Rabiee, James T Morton, Sheila Podell, Dan Knights, Wen-Jun Li, Curtis Huttenhower, Nicola Segata, Larry Smarr, Siavash Mirarab, Rob Knight | Nature Communications | 2019-12-02 |
| Gadoxetate-enhanced Abbreviated MRI for Hepatocellular Carcinoma Surveillance: Preliminary Experience. | Ryan L Brunsing, Dennis H Chen, Alexandra Schlein, Tanya Wolfson, Anthony Gamst, Adrija Mamidipalli, Naik Vietti Violi, Robert M Marks, Bachir Taouli, Rohit Loomba, Yuko Kono, Claude B Sirlin | Radiology. Imaging Cancer | 2019-11-29 |
| A Novel Mouse Model of Acute-on-Chronic Cholestatic Alcoholic Liver Disease: A Systems Biology Comparison With Human Alcoholic Hepatitis. | Shinji Furuya, Josepmaria Argemi, Takeki Uehara, Yuuki Katou, Derrick E Fouts, Bernd Schnabl, Laurent Dubuquoy, Abha Belorkar, Rajanikanth Vadigepalli, Hiroshi Kono, Ramon Bataller, Ivan Rusyn | Alcoholism, Clinical And Experimental Research | 2019-11-28 |
| Investigating bifidobacteria and human milk oligosaccharide composition of lactating mothers. | Gabriele Andrea Lugli, Sabrina Duranti, Christian Milani, Leonardo Mancabelli, Francesca Turroni, Giulia Alessandri, Giulia Longhi, Rosaria Anzalone, Alice Viappinai, Chiara Tarracchini, Sergio Bernasconi, Chloe Yonemitsu, Lars Bode, Michael I Goran, Maria Cristina Ossiprandi, Douwe van Sinderen, Marco Ventura | FEMS Microbiology Ecology | 2019-11-27 |
| Nod-like receptors are critical for gut-brain axis signalling in mice. | Matteo M Pusceddu, Mariana Barboza, Ciara E Keogh, Melinda Schneider, Patricia Stokes, Jessica A Sladek, Hyun Jung D Kim, Cristina Torres-Fuentes, Lily R Goldfild, Shane E Gillis, Ingrid Brust-Mascher, Gonzalo Rabasa, Kyle A Wong, Carlito Lebrilla, Mariana X Byndloss, Charles Maisonneuve, Andreas J Bäumler, Dana J Philpott, Richard L Ferrero, Kim E Barrett, Colin Reardon, Mélanie G Gareau | The Journal Of Physiology | 2019-11-27 |
| Urinary tract infection in pediatrics: an overview. | Ana Cristina Simões E Silva, Eduardo A Oliveira, Robert H Mak | Jornal De Pediatria | 2019-11-26 |
| A mouse model for vitamin D-induced human cathelicidin antimicrobial peptide gene expression. | Malcolm B Lowry, Chunxiao Guo, Yang Zhang, Mary L Fantacone, Isabelle E Logan, Yan Campbell, Weijian Zhang, Mai Le, Arup K Indra, Gitali Ganguli-Indra, Jingwei Xie, Richard L Gallo, H Phillip Koeffler, Adrian F Gombart | The Journal Of Steroid Biochemistry And Molecular Biology | 2019-11-26 |
| Better executive function is independently associated with full HIV suppression during combination therapy. | Albert M Anderson, Josué Pérez-Santiago, Ziduo Zheng, Eugene Huang, Donald Franklin, Jennifer Iudicello, David J Moore, Ronald J Ellis, Robert K Heaton, Scott L Letendre | AIDS (London, England) | 2019-11-26 |
| Adaptive evolution reveals a tradeoff between growth rate and oxidative stress during naphthoquinone-based aerobic respiration. | Amitesh Anand, Ke Chen, Laurence Yang, Anand V Sastry, Connor A Olson, Saugat Poudel, Yara Seif, Ying Hefner, Patrick V Phaneuf, Sibei Xu, Richard Szubin, Adam M Feist, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2019-11-25 |
| PD-L1:CD80 Cis-Heterodimer Triggers the Co-stimulatory Receptor CD28 While Repressing the Inhibitory PD-1 and CTLA-4 Pathways. | Yunlong Zhao, Calvin K Lee, Chia-Hao Lin, Rodrigo B Gassen, Xiaozheng Xu, Zhe Huang, Changchun Xiao, Cristina Bonorino, Li-Fan Lu, Jack D Bui, Enfu Hui | Immunity | 2019-11-19 |
| Reproducibility, stability, and accuracy of microbial profiles by fecal sample collection method in three distinct populations. | Doratha A Byrd, Jun Chen, Emily Vogtmann, Autumn Hullings, Se Jin Song, Amnon Amir, Muhammad G Kibriya, Habibul Ahsan, Yu Chen, Heidi Nelson, Rob Knight, Jianxin Shi, Nicholas Chia, Rashmi Sinha | PloS One | 2019-11-18 |
| The Future of Microbiome-Based Therapeutics in Clinical Applications. | Anukriti Sharma, Promi Das, Mary Buschmann, Jack A Gilbert | Clinical Pharmacology And Therapeutics | 2019-11-15 |
| Safety, Tolerability, and Effects of Sodium Bicarbonate Inhalation in Cystic Fibrosis. | Carla Cristina Souza Gomez, Paloma Lopes Francisco Parazzi, Karl Jan Clinckspoor, Renan Marrichi Mauch, Francisco Benedito Teixeira Pessine, Carlos Emilio Levy, Andressa Oliveira Peixoto, Maria Ângela Gonçalves Oliveira Ribeiro, Antônio Fernando Ribeiro, Douglas Conrad, Paul Marquis Quinton, Fernando Augusto Lima Marson, José Dirceu Ribeiro | Clinical Drug Investigation | 2019-11-14 |
| Quantitative analysis of subsp proteome in response to antibiotics and during exposure to different environmental conditions. | Rajoana Rojony, Matthew Martin, Anaamika Campeau, Jacob M Wozniak, David J Gonzalez, Pankaj Jaiswal, L Danelishvili, Luiz E Bermudez | Clinical Proteomics | 2019-11-13 |
| Bacteriophage targeting of gut bacterium attenuates alcoholic liver disease. | Yi Duan, Cristina Llorente, Sonja Lang, Katharina Brandl, Huikuan Chu, Lu Jiang, Richard C White, Thomas H Clarke, Kevin Nguyen, Manolito Torralba, Yan Shao, Jinyuan Liu, Adriana Hernandez-Morales, Lauren Lessor, Imran R Rahman, Yukiko Miyamoto, Melissa Ly, Bei Gao, Weizhong Sun, Roman Kiesel, Felix Hutmacher, Suhan Lee, Meritxell Ventura-Cots, Francisco Bosques-Padilla, Elizabeth C Verna, Juan G Abraldes, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie L Shawcross, Samuel B Ho, Alexandre Louvet, Michael R Lucey, Philippe Mathurin, Guadalupe Garcia-Tsao, Ramon Bataller, Xin M Tu, Lars Eckmann, Wilfred A van der Donk, Ry Young, Trevor D Lawley, Peter Stärkel, David Pride, Derrick E Fouts, Bernd Schnabl | Nature | 2019-11-13 |
| Ecology and Host Identity Outweigh Evolutionary History in Shaping the Bat Microbiome. | Holly L Lutz, Elliot W Jackson, Paul W Webala, Waswa S Babyesiza, Julian C Kerbis Peterhans, Terrence C Demos, Bruce D Patterson, Jack A Gilbert | MSystems | 2019-11-12 |
| High-quality genome-scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities. | Juan Nogales, Joshua Mueller, Steinn Gudmundsson, Francisco J Canalejo, Estrella Duque, Jonathan Monk, Adam M Feist, Juan Luis Ramos, Wei Niu, Bernhard O Palsson | Environmental Microbiology | 2019-11-11 |
| Comparative Genomics and Metabolomics Analyses of Clavulanic Acid-Producing Species Provides Insight Into Specialized Metabolism. | Nader F AbuSara, Brandon M Piercey, Marcus A Moore, Arshad Ali Shaikh, Louis-Félix Nothias, Santosh K Srivastava, Pablo Cruz-Morales, Pieter C Dorrestein, Francisco Barona-Gómez, Kapil Tahlan | Frontiers In Microbiology | 2019-11-08 |
| Author Correction: Environmental stimuli drive a transition from cooperation to competition in synthetic phototrophic communities. | Cristal Zuñiga, Chien-Ting Li, Geng Yu, Mahmoud M Al-Bassam, Tingting Li, Liqun Jiang, Livia S Zaramela, Michael Guarnieri, Michael J Betenbaugh, Karsten Zengler | Nature Microbiology | 2019-11-07 |
| Learning representations of microbe-metabolite interactions. | James T Morton, Alexander A Aksenov, Louis Felix Nothias, James R Foulds, Robert A Quinn, Michelle H Badri, Tami L Swenson, Marc W Van Goethem, Trent R Northen, Yoshiki Vazquez-Baeza, Mingxun Wang, Nicholas A Bokulich, Aaron Watters, Se Jin Song, Richard Bonneau, Pieter C Dorrestein, Rob Knight | Nature Methods | 2019-11-04 |
| Home chemical and microbial transitions across urbanization. | Laura-Isobel McCall, Chris Callewaert, Qiyun Zhu, Se Jin Song, Amina Bouslimani, Jeremiah J Minich, Madeleine Ernst, Jean F Ruiz-Calderon, Humberto Cavallin, Henrique S Pereira, Atila Novoselac, Jean Hernandez, Rafael Rios, OraLee H Branch, Martin J Blaser, Luciana C Paulino, Pieter C Dorrestein, Rob Knight, Maria G Dominguez-Bello | Nature Microbiology | 2019-11-04 |
| Erythrocyte-Coated Nanoparticles Block Cytotoxic Effects of Group B β-Hemolysin/Cytolysin. | Jenny Koo, Tamara Escajadillo, Liangfang Zhang, Victor Nizet, Shelley M Lawrence | Frontiers In Pediatrics | 2019-11-01 |
| Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity. | Robert C Kaplan, Zheng Wang, Mykhaylo Usyk, Daniela Sotres-Alvarez, Martha L Daviglus, Neil Schneiderman, Gregory A Talavera, Marc D Gellman, Bharat Thyagarajan, Jee-Young Moon, Yoshiki Vázquez-Baeza, Daniel McDonald, Jessica S Williams-Nguyen, Michael C Wu, Kari E North, Justin Shaffer, Christopher C Sollecito, Qibin Qi, Carmen R Isasi, Tao Wang, Rob Knight, Robert D Burk | Genome Biology | 2019-11-01 |
| A generalized HIV vaccine design strategy for priming of broadly neutralizing antibody responses. | Jon M Steichen, Ying-Cing Lin, Colin Havenar-Daughton, Simone Pecetta, Gabriel Ozorowski, Jordan R Willis, Laura Toy, Devin Sok, Alessia Liguori, Sven Kratochvil, Jonathan L Torres, Oleksandr Kalyuzhniy, Eleonora Melzi, Daniel W Kulp, Sebastian Raemisch, Xiaozhen Hu, Steffen M Bernard, Erik Georgeson, Nicole Phelps, Yumiko Adachi, Michael Kubitz, Elise Landais, Jeffrey Umotoy, Amanda Robinson, Bryan Briney, Ian A Wilson, Dennis R Burton, Andrew B Ward, Shane Crotty, Facundo D Batista, William R Schief | Science (New York, N.Y.) | 2019-10-31 |
| Cost-Effectiveness Analysis of Screening for Hepatitis B Virus Infection in Patients With Solid Tumors Before Initiating Chemotherapy. | Gauree G Konijeti, Sirisha Grandhe, Monica Tincopa, Jill A Lane, Mark G Shrime, Siddharth Singh, Rohit Loomba | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2019-10-31 |
| Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads. | Jon G Sanders, Sergey Nurk, Rodolfo A Salido, Jeremiah Minich, Zhenjiang Z Xu, Qiyun Zhu, Cameron Martino, Marcus Fedarko, Timothy D Arthur, Feng Chen, Brigid S Boland, Greg C Humphrey, Caitriona Brennan, Karenina Sanders, James Gaffney, Kristen Jepsen, Mahdieh Khosroheidari, Cliff Green, Marlon Liyanage, Jason W Dang, Vanessa V Phelan, Robert A Quinn, Anton Bankevich, John T Chang, Tariq M Rana, Douglas J Conrad, William J Sandborn, Larry Smarr, Pieter C Dorrestein, Pavel A Pevzner, Rob Knight | Genome Biology | 2019-10-31 |
| Neighborhoods to Nucleotides - Advances and gaps for an obesity disparities systems epidemiology model. | Marta M Jankowska, Kyle Gaulton, Rob Knight, Kevin Patrick, Dorothy D Sears | Current Epidemiology Reports | 2019-10-30 |
| Interplay of Staphylococcal and Host Proteases Promotes Skin Barrier Disruption in Netherton Syndrome. | Michael R Williams, Laura Cau, Yichen Wang, Drishti Kaul, James A Sanford, Livia S Zaramela, Shadi Khalil, Anna M Butcher, Karsten Zengler, Alexander R Horswill, Christopher L Dupont, Alain Hovnanian, Richard L Gallo | Cell Reports | 2019-10-29 |
| OxyR Is a Convergent Target for Mutations Acquired during Adaptation to Oxidative Stress-Prone Metabolic States. | Amitesh Anand, Ke Chen, Edward Catoiu, Anand V Sastry, Connor A Olson, Troy E Sandberg, Yara Seif, Sibei Xu, Richard Szubin, Laurence Yang, Adam M Feist, Bernhard O Palsson | Molecular Biology And Evolution | 2019-10-28 |
| Western Diet Promotes Intestinal Colonization by Collagenolytic Microbes and Promotes Tumor Formation After Colorectal Surgery. | Sara Gaines, Jasper B van Praagh, Ashley J Williamson, Richard A Jacobson, Sanjiv Hyoju, Alexander Zaborin, Jun Mao, Hyun Y Koo, Lindsay Alpert, Marc Bissonnette, Ralph Weichselbaum, Jack Gilbert, Eugene Chang, Neil Hyman, Olga Zaborina, Benjamin D Shogan, John C Alverdy | Gastroenterology | 2019-10-23 |
| Reply to Kalil et al., "Is Daptomycin plus Ceftaroline Associated with Better Clinical Outcomes than Standard of Care Monotherapy for Staphylococcus aureus Bacteremia?" | George Sakoulas, Matthew Geriak, Fadi Haddad, Warren Rose, Kerry LaPlante, Marcus Zervos, Ravina Kullar, Victor Nizet | Antimicrobial Agents And Chemotherapy | 2019-10-22 |
| Pass-back chain extension expands multimodular assembly line biosynthesis. | Jia Jia Zhang, Xiaoyu Tang, Tao Huan, Avena C Ross, Bradley S Moore | Nature Chemical Biology | 2019-10-21 |
| Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0. | Eric W Deutsch, Lydie Lane, Christopher M Overall, Nuno Bandeira, Mark S Baker, Charles Pineau, Robert L Moritz, Fernando Corrales, Sandra Orchard, Jennifer E Van Eyk, Young-Ki Paik, Susan T Weintraub, Yves Vandenbrouck, Gilbert S Omenn | Journal Of Proteome Research | 2019-10-21 |
| Adaptive laboratory evolution of under acid stress. | Bin Du, Connor A Olson, Anand V Sastry, Xin Fang, Patrick V Phaneuf, Ke Chen, Muyao Wu, Richard Szubin, Sibei Xu, Ye Gao, Ying Hefner, Adam M Feist, Bernhard O Palsson | Microbiology (Reading, England) | 2019-10-18 |
| Protocol for community-created public MS/MS reference spectra within the Global Natural Products Social Molecular Networking infrastructure. | Fernando Vargas, Kelly C Weldon, Nicole Sikora, Mingxun Wang, Zheng Zhang, Emily C Gentry, Morgan W Panitchpakdi, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein, Alan K Jarmusch | Rapid Communications In Mass Spectrometry : RCM | 2019-10-17 |
| Strain-Specific Metabolic Requirements Revealed by a Defined Minimal Medium for Systems Analyses of . | Henrique Machado, Liam L Weng, Nicholas Dillon, Yara Seif, Michelle Holland, Jonathan E Pekar, Jonathan M Monk, Victor Nizet, Bernhard O Palsson, Adam M Feist | Applied And Environmental Microbiology | 2019-10-16 |
| MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities. | Liu Cao, Alexey Gurevich, Kelsey L Alexander, C Benjamin Naman, Tiago Leão, Evgenia Glukhov, Tal Luzzatto-Knaan, Fernando Vargas, Robby Quinn, Amina Bouslimani, Louis Felix Nothias, Nitin K Singh, Jon G Sanders, Rodolfo A S Benitez, Luke R Thompson, Md-Nafiz Hamid, James T Morton, Alla Mikheenko, Alexander Shlemov, Anton Korobeynikov, Iddo Friedberg, Rob Knight, Kasthuri Venkateswaran, William H Gerwick, Lena Gerwick, Pieter C Dorrestein, Pavel A Pevzner, Hosein Mohimani | Cell Systems | 2019-10-16 |
| miRNA-Microbiota Interaction in Gut Homeostasis and Colorectal Cancer. | Jiayi Dong, Jesse W Tai, Li-Fan Lu | Trends In Cancer | 2019-10-14 |
| Ultrahigh-Density Screens for Genome-Wide Yeast EMAPs in a Single Plate. | Katherine Licon, John Paul Shen, Brenton P Munson, Manuel Michaca, Cole Fassino, Luke Fassino, Jason F Kreisberg, Trey Ideker | Methods In Molecular Biology (Clifton, N.J.) | 2019-10-12 |
| Proteomic atlas of organ vasculopathies triggered by Staphylococcus aureus sepsis. | Alejandro Gómez Toledo, Gregory Golden, Alexandre Rosa Campos, Hector Cuello, James Sorrentino, Nathan Lewis, Nissi Varki, Victor Nizet, Jeffrey W Smith, Jeffrey D Esko | Nature Communications | 2019-10-11 |
| Species abundance information improves sequence taxonomy classification accuracy. | Benjamin D Kaehler, Nicholas A Bokulich, Daniel McDonald, Rob Knight, J Gregory Caporaso, Gavin A Huttley | Nature Communications | 2019-10-11 |
| The Candida albicans exotoxin candidalysin promotes alcohol-associated liver disease. | Huikuan Chu, Yi Duan, Sonja Lang, Lu Jiang, Yanhan Wang, Cristina Llorente, Jinyuan Liu, Selene Mogavero, Francisco Bosques-Padilla, Juan G Abraldes, Victor Vargas, Xin M Tu, Ling Yang, Xiaohua Hou, Bernhard Hube, Peter Stärkel, Bernd Schnabl | Journal Of Hepatology | 2019-10-10 |
| Letter: probiotics? Yes, but which ones? Authors' reply. | Saumya Jayakumar, Rohit Loomba | Alimentary Pharmacology & Therapeutics | 2019-10-09 |
| Increases in compulsivity, inflammation, and neural injury in HIV transgenic rats with escalated methamphetamine self-administration under extended-access conditions. | Giordano de Guglielmo, Yu Fu, Jihuan Chen, Estefania Larrosa, Ivy Hoang, Tomoya Kawamura, Irene Lorrai, Barry Zorman, Joseph Bryant, Olivier George, Pavel Sumazin, Celine Lefebvre, Vez Repunte-Canonigo, Pietro Paolo Sanna | Brain Research | 2019-10-09 |
| Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny. | Katherine R Amato, Elizabeth K Mallott, Daniel McDonald, Nathaniel J Dominy, Tony Goldberg, Joanna E Lambert, Larissa Swedell, Jessica L Metcalf, Andres Gomez, Gillian A O Britton, Rebecca M Stumpf, Steven R Leigh, Rob Knight | Genome Biology | 2019-10-08 |
| Metaviral SPAdes: assembly of viruses from metagenomic data. | Dmitry Antipov, Mikhail Raiko, Alla Lapidus, Pavel A Pevzner | Bioinformatics (Oxford, England) | 2019-10-08 |
| Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom. | Sarah R Smith, Chris L Dupont, James K McCarthy, Jared T Broddrick, Miroslav Oborník, Aleš Horák, Zoltán Füssy, Jaromír Cihlář, Sabrina Kleessen, Hong Zheng, John P McCrow, Kim K Hixson, Wagner L Araújo, Adriano Nunes-Nesi, Alisdair Fernie, Zoran Nikoloski, Bernhard O Palsson, Andrew E Allen | Nature Communications | 2019-10-07 |
| Environmental stimuli drive a transition from cooperation to competition in synthetic phototrophic communities. | Cristal Zuñiga, Chien-Ting Li, Geng Yu, Mahmoud M Al-Bassam, Tingting Li, Liqun Jiang, Livia S Zaramela, Michael Guarnieri, Michael J Betenbaugh, Karsten Zengler | Nature Microbiology | 2019-10-07 |
| Wirelessly observed therapy compared to directly observed therapy to confirm and support tuberculosis treatment adherence: A randomized controlled trial. | Sara H Browne, Anya Umlauf, Amanda J Tucker, Julie Low, Kathleen Moser, Jonathan Gonzalez Garcia, Charles A Peloquin, Terrence Blaschke, Florin Vaida, Constance A Benson | PLoS Medicine | 2019-10-04 |
| Discovery of New Inhibitors of Hepatitis C Virus NS3/4A Protease and Its D168A Mutant. | Ittipat Meewan, Xingquan Zhang, Suchismita Roy, Carlo Ballatore, Anthony J O'Donoghue, Robert T Schooley, Ruben Abagyan | ACS Omega | 2019-10-02 |
| Letrozole treatment of pubertal female mice results in activational effects on reproduction, metabolism and the gut microbiome. | Pablo Arroyo, Bryan S Ho, Lillian Sau, Scott T Kelley, Varykina G Thackray | PloS One | 2019-09-30 |
| Voices in methods development. | Polina Anikeeva, Edward Boyden, Clifford Brangwynne, Ibrahim I Cissé, Oliver Fiehn, Petra Fromme, Anne-Claude Gingras, Casey S Greene, Edith Heard, Stefan W Hell, Elizabeth Hillman, Grant Jay Jensen, Rachel Karchin, Laura L Kiessling, Benjamin P Kleinstiver, Rob Knight, Philipp Kukura, Madeline A Lancaster, Nicholas Loman, Loren Looger, Emma Lundberg, Qingming Luo, Atsushi Miyawaki, Eugene W Myers, Garry P Nolan, Paola Picotti, Wolf Reik, Markus Sauer, Alex K Shalek, Jay Shendure, Nikolai Slavov, Amos Tanay, Olga Troyanskaya, David van Valen, Hong-Wei Wang, Chengqi Yi, Peng Yin, Magdalena Zernicka-Goetz, Xiaowei Zhuang | Nature Methods | 2019-09-29 |
| Utilizing genome-scale models to optimize nutrient supply for sustained algal growth and lipid productivity. | Chien-Ting Li, Jacob Yelsky, Yiqun Chen, Cristal Zuñiga, Richard Eng, Liqun Jiang, Alison Shapiro, Kai-Wen Huang, Karsten Zengler, Michael J Betenbaugh | NPJ Systems Biology And Applications | 2019-09-24 |
| Altered Gut Microbiota and Host Metabolite Profiles in Women With Human Immunodeficiency Virus. | Zheng Wang, Mykhaylo Usyk, Christopher C Sollecito, Yunping Qiu, Jessica Williams-Nguyen, Simin Hua, Ana Gradissimo, Tao Wang, Xiaonan Xue, Irwin J Kurland, Klaus Ley, Alan L Landay, Kathryn Anastos, Rob Knight, Robert C Kaplan, Robert D Burk, Qibin Qi | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2019-09-24 |
| Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis. | Alexey V Melnik, Yoshiki Vázquez-Baeza, Alexander A Aksenov, Embriette Hyde, Andrew C McAvoy, Mingxun Wang, Ricardo R da Silva, Ivan Protsyuk, Jason V Wu, Amina Bouslimani, Yan Wei Lim, Tal Luzzatto-Knaan, William Comstock, Robert A Quinn, Richard Wong, Greg Humphrey, Gail Ackermann, Timothy Spivey, Sharon S Brouha, Nuno Bandeira, Grace Y Lin, Forest Rohwer, Douglas J Conrad, Theodore Alexandrov, Rob Knight, Pieter C Dorrestein, Neha Garg | MSystems | 2019-09-24 |
| Acoustic Nanomotors for Detection of Human Papillomavirus-Associated Head and Neck Cancer. | Jesse R Qualliotine, Gulcin Bolat, Mara Beltrán-Gastélum, Berta Esteban-Fernández de Ávila, Joseph Wang, Joseph A Califano | Otolaryngology--head And Neck Surgery : Official Journal Of American Academy Of Otolaryngology-Head And Neck Surgery | 2019-09-24 |
| Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates. | Livia S Zaramela, Cameron Martino, Frederico Alisson-Silva, Steven D Rees, Sandra L Diaz, Léa Chuzel, Mehul B Ganatra, Christopher H Taron, Patrick Secrest, Cristal Zuñiga, Jianbo Huang, Dionicio Siegel, Geoffrey Chang, Ajit Varki, Karsten Zengler | Nature Microbiology | 2019-09-23 |
| Grindr Users Take More Risks, but Are More Open to Human Immunodeficiency Virus (HIV) Pre-exposure Prophylaxis: Could This Dating App Provide a Platform for HIV Prevention Outreach? | Martin Hoenigl, Susan J Little, David Grelotti, Britt Skaathun, Gabriel A Wagner, Nadir Weibel, Jamila K Stockman, Davey M Smith | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2019-09-20 |
| Computationally Designed Peptides for Zika Virus Detection: An Incremental Construction Approach. | Marcello Mascini, Emre Dikici, Marta Robles Mañueco, Julio A Perez-Erviti, Sapna K Deo, Dario Compagnone, Joseph Wang, José M Pingarrón, Sylvia Daunert | Biomolecules | 2019-09-17 |
| Multiple genes recruited from hormone pathways partition maize diterpenoid defences. | Yezhang Ding, Katherine M Murphy, Elly Poretsky, Sibongile Mafu, Bing Yang, Si Nian Char, Shawn A Christensen, Evan Saldivar, Mengxi Wu, Qiang Wang, Lexiang Ji, Robert J Schmitz, Karl A Kremling, Edward S Buckler, Zhouxin Shen, Steven P Briggs, Jörg Bohlmann, Andrew Sher, Gabriel Castro-Falcon, Chambers C Hughes, Alisa Huffaker, Philipp Zerbe, Eric A Schmelz | Nature Plants | 2019-09-16 |
| Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome. | Carrie E Jung, Jessica Chopyk, Ji Hyun Shin, Emily S Lukacz, Linda Brubaker, Leila K Schwanemann, Rob Knight, Alan J Wolfe, David T Pride | Scientific Reports | 2019-09-16 |
| Molecular Docking of Broad-Spectrum Antibodies on Hemagglutinins of Influenza A Virus. | Khanh Pb Le, Phuc-Chau Do, Rommie E Amaro, Ly Le | Evolutionary Bioinformatics Online | 2019-09-16 |
| Macrocyclic colibactin induces DNA double-strand breaks via copper-mediated oxidative cleavage. | Zhong-Rui Li, Jie Li, Wenlong Cai, Jennifer Y H Lai, Shaun M K McKinnie, Wei-Peng Zhang, Bradley S Moore, Wenjun Zhang, Pei-Yuan Qian | Nature Chemistry | 2019-09-16 |
| The effect of legume supplementation on the gut microbiota in rural Malawian infants aged 6 to 12 months. | M Isabel Ordiz, Stefan Janssen, Greg Humphrey, Gail Ackermann, Kevin Stephenson, Sophia Agapova, Oscar Divala, Yankho Kaimila, Ken Maleta, Caroline Zhong, Rob Knight, Indi Trehan, Phillip I Tarr, Brigida Rusconi, Mark J Manary | The American Journal Of Clinical Nutrition | 2019-09-14 |
| TADA: phylogenetic augmentation of microbiome samples enhances phenotype classification. | Erfan Sayyari, Ban Kawas, Siavash Mirarab | Bioinformatics (Oxford, England) | 2019-09-13 |
| Response to Comment on "A commensal strain of protects against skin neoplasia" by Nakatsuji . | Teruaki Nakatsuji, William Fenical, Richard L Gallo | Science Advances | 2019-09-11 |
| Modification of RSF1010-Based Broad-Host-Range Plasmids for Improved Conjugation and Cyanobacterial Bioprospecting. | Bryan Bishé, Arnaud Taton, James W Golden | IScience | 2019-09-10 |
| The Virome of Cerebrospinal Fluid: Viruses Where We Once Thought There Were None. | Chandrabali Ghose, Melissa Ly, Leila K Schwanemann, Ji Hyun Shin, Katayoon Atab, Jeremy J Barr, Mark Little, Robert T Schooley, Jessica Chopyk, David T Pride | Frontiers In Microbiology | 2019-09-06 |
| Challenges in the construction of knowledge bases for human microbiome-disease associations. | Varsha Dave Badal, Dustin Wright, Yannis Katsis, Ho-Cheol Kim, Austin D Swafford, Rob Knight, Chun-Nan Hsu | Microbiome | 2019-09-05 |
| Expanding the scope and scale of microbiome research. | Rob Knight, Ruth E Ley, Jeroen Raes, Elizabeth A Grice | Genome Biology | 2019-09-05 |
| Gut microbiome in serious mental illnesses: A systematic review and critical evaluation. | Tanya T Nguyen, Hugh Hathaway, Tomasz Kosciolek, Rob Knight, Dilip V Jeste | Schizophrenia Research | 2019-09-05 |
| Sialic acid-binding immunoglobulin-like lectins (Siglecs) detect self-associated molecular patterns to regulate immune responses. | Heinz Läubli, Ajit Varki | Cellular And Molecular Life Sciences : CMLS | 2019-09-04 |
| The Origin, Succession, and Predicted Metabolism of Bacterial Communities Associated with Leaf Decomposition. | Sara L Jackrel, Jack A Gilbert, J Timothy Wootton | MBio | 2019-09-03 |
| Microbial Exchange via Fomites and Implications for Human Health. | Brent Stephens, Parham Azimi, Megan S Thoemmes, Mohammad Heidarinejad, Joseph G Allen, Jack A Gilbert | Current Pollution Reports | 2019-08-31 |
| Comparing Analytical Methods for the Gut Microbiome and Aging: Gut Microbial Communities and Body Weight in the Osteoporotic Fractures in Men (MrOS) Study. | Michelle Shardell, Neeta Parimi, Lisa Langsetmo, Toshiko Tanaka, Lingjing Jiang, Eric Orwoll, James M Shikany, Deborah M Kado, Peggy M Cawthon | The Journals Of Gerontology. Series A, Biological Sciences And Medical Sciences | 2019-08-30 |
| Cytotoxic Microcolin Lipopeptides from the Marine Cyanobacterium . | Hao-Bing Yu, Evgenia Glukhov, Yueying Li, Arihiro Iwasaki, Lena Gerwick, Pieter C Dorrestein, Bing-Hua Jiao, William H Gerwick | Journal Of Natural Products | 2019-08-30 |
| Author Correction: Immune-orthogonal orthologues of AAV capsids and of Cas9 circumvent the immune response to the administration of gene therapy. | Ana M Moreno, Nathan Palmer, Fernando Alemán, Genghao Chen, Andrew Pla, Ning Jiang, Wei Leong Chew, Mansun Law, Prashant Mali | Nature Biomedical Engineering | 2019-08-29 |
| Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons. | Baozhan Wang, Wei Qin, Yi Ren, Xue Zhou, Man-Young Jung, Ping Han, Emiley A Eloe-Fadrosh, Meng Li, Yue Zheng, Lu Lu, Xin Yan, Junbin Ji, Yang Liu, Linmeng Liu, Cheryl Heiner, Richard Hall, Willm Martens-Habbena, Craig W Herbold, Sung-Keun Rhee, Douglas H Bartlett, Li Huang, Anitra E Ingalls, Michael Wagner, David A Stahl, Zhongjun Jia | The ISME Journal | 2019-08-28 |
| Systems Biology and Pangenome of O-Antigens. | Yara Seif, Jonathan M Monk, Henrique Machado, Erol Kavvas, Bernhard O Palsson | MBio | 2019-08-27 |
| Precise in vivo genome editing via single homology arm donor mediated intron-targeting gene integration for genetic disease correction. | Keiichiro Suzuki, Mako Yamamoto, Reyna Hernandez-Benitez, Zhe Li, Christopher Wei, Rupa Devi Soligalla, Emi Aizawa, Fumiyuki Hatanaka, Masakazu Kurita, Pradeep Reddy, Alejandro Ocampo, Tomoaki Hishida, Masahiro Sakurai, Amy N Nemeth, Estrella Nuñez Delicado, Josep M Campistol, Pierre Magistretti, Pedro Guillen, Concepcion Rodriguez Esteban, Jianhui Gong, Yilin Yuan, Ying Gu, Guang-Hui Liu, Carlos López-Otín, Jun Wu, Kun Zhang, Juan Carlos Izpisua Belmonte | Cell Research | 2019-08-23 |
| TreeCluster: Clustering biological sequences using phylogenetic trees. | Metin Balaban, Niema Moshiri, Uyen Mai, Xingfan Jia, Siavash Mirarab | PloS One | 2019-08-22 |
| Functional and Proteomic Analysis of Virulence Upon Loss of Its Native Cas9 Nuclease. | Nina J Gao, Mahmoud M Al-Bassam, Saugat Poudel, Jacob M Wozniak, David J Gonzalez, Joshua Olson, Karsten Zengler, Victor Nizet, J Andrés Valderrama | Frontiers In Microbiology | 2019-08-22 |
| Antigen-Specific Mucosal Immunity Regulates Development of Intestinal Bacteria-Mediated Diseases. | Kosuke Fujimoto, Yunosuke Kawaguchi, Masaki Shimohigoshi, Yoshiyuki Gotoh, Yoshiko Nakano, Yuki Usui, Tetsuya Hayashi, Yasumasa Kimura, Miho Uematsu, Takuya Yamamoto, Yukihiro Akeda, Joon Haeng Rhee, Yoshikazu Yuki, Ken J Ishii, Sheila E Crowe, Peter B Ernst, Hiroshi Kiyono, Satoshi Uematsu | Gastroenterology | 2019-08-21 |
| A Microbiome-Based Index for Assessing Skin Health and Treatment Effects for Atopic Dermatitis in Children. | Zheng Sun, Shi Huang, Pengfei Zhu, Feng Yue, Helen Zhao, Ming Yang, Yueqing Niu, Gongchao Jing, Xiaoquan Su, Huiying Li, Chris Callewaert, Rob Knight, Jiquan Liu, Ed Smith, Karl Wei, Jian Xu | MSystems | 2019-08-20 |
| Intestinal Fungal Dysbiosis and Systemic Immune Response to Fungi in Patients With Alcoholic Hepatitis. | Sonja Lang, Yi Duan, Jinyuan Liu, Manolito G Torralba, Claire Kuelbs, Meritxell Ventura-Cots, Juan G Abraldes, Francisco Bosques-Padilla, Elizabeth C Verna, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie Shawcross, Michael R Lucey, Alexandre Louvet, Philippe Mathurin, Guadalupe Garcia-Tsao, Samuel B Ho, Xin M Tu, Ramon Bataller, Peter Stärkel, Derrick E Fouts, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2019-08-20 |
| Inactivation of a Mismatch-Repair System Diversifies Genotypic Landscape of During Adaptive Laboratory Evolution. | Minjeong Kang, Kangsan Kim, Donghui Choe, Suhyung Cho, Sun Chang Kim, Bernhard Palsson, Byung-Kwan Cho | Frontiers In Microbiology | 2019-08-16 |
| Invasive Pneumococcal Disease in Children's Hospitals: 2014-2017. | Sheldon L Kaplan, William J Barson, Philana Ling Lin, José R Romero, John S Bradley, Tina Q Tan, Pia S Pannaraj, Laurence B Givner, Kristina G Hulten | Pediatrics | 2019-08-16 |
| Retinoids Enhance the Expression of Cathelicidin Antimicrobial Peptide during Reactive Dermal Adipogenesis. | Marc C Liggins, Fengwu Li, Ling-Juan Zhang, Tatsuya Dokoshi, Richard L Gallo | Journal Of Immunology (Baltimore, Md. : 1950) | 2019-08-16 |
| A Network of SLC and ABC Transporter and DME Genes Involved in Remote Sensing and Signaling in the Gut-Liver-Kidney Axis. | Sara Brin Rosenthal, Kevin T Bush, Sanjay K Nigam | Scientific Reports | 2019-08-15 |
| Defining the relationship between vaginal and urinary microbiomes. | Yuko M Komesu, Darrell L Dinwiddie, Holly E Richter, Emily S Lukacz, Vivian W Sung, Nazema Y Siddiqui, Halina M Zyczynski, Beri Ridgeway, Rebecca G Rogers, Lily A Arya, Donna Mazloomdoost, Josh Levy, Benjamin Carper, Marie G Gantz, | American Journal Of Obstetrics And Gynecology | 2019-08-14 |
| Antibodies to Enteroviruses in Cerebrospinal Fluid of Patients with Acute Flaccid Myelitis. | Nischay Mishra, Terry Fei Fan Ng, Rachel L Marine, Komal Jain, James Ng, Riddhi Thakkar, Adrian Caciula, Adam Price, Joel A Garcia, Jane C Burns, Kiran T Thakur, Kimbell L Hetzler, Janell A Routh, Jennifer L Konopka-Anstadt, W Allan Nix, Rafal Tokarz, Thomas Briese, M Steven Oberste, W Ian Lipkin | MBio | 2019-08-13 |
| Age and Mothers: Potent Influences of Children's Skin Microbiota. | Ting Zhu, Xing Liu, Fan-Qi Kong, Yuan-Yuan Duan, Alyson L Yee, Madeline Kim, Carlos Galzote, Jack A Gilbert, Zhe-Xue Quan | The Journal Of Investigative Dermatology | 2019-08-13 |
| Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. | Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Gabriel A Al-Ghalith, Harriet Alexander, Eric J Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E Bisanz, Kyle Bittinger, Asker Brejnrod, Colin J Brislawn, C Titus Brown, Benjamin J Callahan, Andrés Mauricio Caraballo-Rodríguez, John Chase, Emily K Cope, Ricardo Da Silva, Christian Diener, Pieter C Dorrestein, Gavin M Douglas, Daniel M Durall, Claire Duvallet, Christian F Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M Gauglitz, Sean M Gibbons, Deanna L Gibson, Antonio Gonzalez, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin A Huttley, Stefan Janssen, Alan K Jarmusch, Lingjing Jiang, Benjamin D Kaehler, Kyo Bin Kang, Christopher R Keefe, Paul Keim, Scott T Kelley, Dan Knights, Irina Koester, Tomasz Kosciolek, Jorden Kreps, Morgan G I Langille, Joslynn Lee, Ruth Ley, Yong-Xin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J McIver, Alexey V Melnik, Jessica L Metcalf, Sydney C Morgan, Jamie T Morton, Ahmad Turan Naimey, Jose A Navas-Molina, Louis Felix Nothias, Stephanie B Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary Lai Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam Rivers, Michael S Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R Spear, Austin D Swafford, Luke R Thompson, Pedro J Torres, Pauline Trinh, Anupriya Tripathi, Peter J Turnbaugh, Sabah Ul-Hasan, Justin J J van der Hooft, Fernando Vargas, Yoshiki Vázquez-Baeza, Emily Vogtmann, Max von Hippel, William Walters, Yunhu Wan, Mingxun Wang, Jonathan Warren, Kyle C Weber, Charles H D Williamson, Amy D Willis, Zhenjiang Zech Xu, Jesse R Zaneveld, Yilong Zhang, Qiyun Zhu, Rob Knight, J Gregory Caporaso | Nature Biotechnology | 2019-08-11 |
| The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology. | Troy E Sandberg, Michael J Salazar, Liam L Weng, Bernhard O Palsson, Adam M Feist | Metabolic Engineering | 2019-08-08 |
| Helicobacter pylori Infection. Reply. | Sheila E Crowe | The New England Journal Of Medicine | 2019-08-08 |
| Perspective: Dietary Biomarkers of Intake and Exposure-Exploration with Omics Approaches. | Padma Maruvada, Johanna W Lampe, David S Wishart, Dinesh Barupal, Deirdra N Chester, Dylan Dodd, Yannick Djoumbou-Feunang, Pieter C Dorrestein, Lars O Dragsted, John Draper, Linda C Duffy, Johanna T Dwyer, Nancy J Emenaker, Oliver Fiehn, Robert E Gerszten, Frank B Hu, Robert W Karp, David M Klurfeld, Maren R Laughlin, A Roger Little, Christopher J Lynch, Steven C Moore, Holly L Nicastro, Diane M O'Brien, José M Ordovás, Stavroula K Osganian, Mary Playdon, Ross Prentice, Daniel Raftery, Nichole Reisdorph, Helen M Roche, Sharon A Ross, Shengmin Sang, Augustin Scalbert, Pothur R Srinivas, Steven H Zeisel | Advances In Nutrition (Bethesda, Md.) | 2019-08-07 |
| Reply to Sun et al., "Identifying Composition Novelty in Microbiome Studies: Improvement of Prediction Accuracy". | Xiaoquan Su, Gongchao Jing, Daniel McDonald, Honglei Wang, Zengbin Wang, Antonio Gonzalez, Zheng Sun, Shi Huang, Jose Navas, Rob Knight, Jian Xu | MBio | 2019-08-06 |
| Heterogenous Populations of Tissue-Resident CD8 T Cells Are Generated in Response to Infection and Malignancy. | J Justin Milner, Clara Toma, Zhaoren He, Nadia S Kurd, Quynh P Nguyen, Bryan McDonald, Lauren Quezada, Christella E Widjaja, Deborah A Witherden, John T Crowl, Laura A Shaw, Gene W Yeo, John T Chang, Kyla D Omilusik, Ananda W Goldrath | Immunity | 2019-08-04 |
| Photopiperazines A-D, Photosensitive Interconverting Diketopiperazines with Significant and Selective Activity against U87 Glioblastoma Cells, from a Rare, Marine-Derived Actinomycete of the Family Streptomycetaceae. | Min Cheol Kim, Reiko Cullum, Henrique Machado, Alexander J Smith, Inho Yang, Jeffrey J Rodvold, William Fenical | Journal Of Natural Products | 2019-08-01 |
| Targeting Interleukin(IL)-30/IL-27p28 signaling in cancer stem-like cells and host environment synergistically inhibits prostate cancer growth and improves survival. | Carlo Sorrentino, Zhinan Yin, Stefania Ciummo, Paola Lanuti, Li-Fan Lu, Marco Marchisio, Matteo Bellone, Emma Di Carlo | Journal For Immunotherapy Of Cancer | 2019-07-31 |
| Molecular characterization and functional analysis of the Schistosoma mekongi Ca-dependent cysteine protease (calpain). | Salisa Chaimon, Yanin Limpanont, Onrapak Reamtong, Sumate Ampawong, Orawan Phuphisut, Phiraphol Chusongsang, Jiraporn Ruangsittichai, Usa Boonyuen, Dorn Watthanakulpanich, Anthony J O'Donoghue, Conor R Caffrey, Poom Adisakwattana | Parasites & Vectors | 2019-07-30 |
| Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages. | Julia M Gauglitz, Christine M Aceves, Alexander A Aksenov, Gajender Aleti, Jehad Almaliti, Amina Bouslimani, Elizabeth A Brown, Anaamika Campeau, Andrés Mauricio Caraballo-Rodríguez, Rama Chaar, Ricardo R da Silva, Alyssa M Demko, Francesca Di Ottavio, Emmanuel Elijah, Madeleine Ernst, L Paige Ferguson, Xavier Holmes, Alan K Jarmusch, Lingjing Jiang, Kyo Bin Kang, Irina Koester, Brian Kwan, Jie Li, Yueying Li, Alexey V Melnik, Carlos Molina-Santiago, Bohan Ni, Aaron L Oom, Morgan W Panitchpakdi, Daniel Petras, Robert Quinn, Nicole Sikora, Katharina Spengler, Bahar Teke, Anupriya Tripathi, Sabah Ul-Hasan, Justin J J van der Hooft, Fernando Vargas, Alison Vrbanac, Anthony Q Vu, Steven C Wang, Kelly Weldon, Kayla Wilson, Jacob M Wozniak, Michael Yoon, Nuno Bandeira, Pieter C Dorrestein | Food Chemistry | 2019-07-30 |
| Microbial Similarity between Students in a Common Dormitory Environment Reveals the Forensic Potential of Individual Microbial Signatures. | Miles Richardson, Neil Gottel, Jack A Gilbert, Simon Lax | MBio | 2019-07-30 |
| Postoperative urinary tract infection after urogynecologic surgery: timing and uropathogens. | Carrie E Jung, Linda Brubaker | International Urogynecology Journal | 2019-07-29 |
| Long-lasting analgesia via targeted in situ repression of Na1.7 in mice. | Ana M Moreno, Fernando Alemán, Glaucilene F Catroli, Matthew Hunt, Michael Hu, Amir Dailamy, Andrew Pla, Sarah A Woller, Nathan Palmer, Udit Parekh, Daniella McDonald, Amanda J Roberts, Vanessa Goodwill, Ian Dryden, Robert F Hevner, Lauriane Delay, Gilson Gonçalves Dos Santos, Tony L Yaksh, Prashant Mali | Science Translational Medicine | 2019-07-28 |
| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. | Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Gabriel A Al-Ghalith, Harriet Alexander, Eric J Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E Bisanz, Kyle Bittinger, Asker Brejnrod, Colin J Brislawn, C Titus Brown, Benjamin J Callahan, Andrés Mauricio Caraballo-Rodríguez, John Chase, Emily K Cope, Ricardo Da Silva, Christian Diener, Pieter C Dorrestein, Gavin M Douglas, Daniel M Durall, Claire Duvallet, Christian F Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M Gauglitz, Sean M Gibbons, Deanna L Gibson, Antonio Gonzalez, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin A Huttley, Stefan Janssen, Alan K Jarmusch, Lingjing Jiang, Benjamin D Kaehler, Kyo Bin Kang, Christopher R Keefe, Paul Keim, Scott T Kelley, Dan Knights, Irina Koester, Tomasz Kosciolek, Jorden Kreps, Morgan G I Langille, Joslynn Lee, Ruth Ley, Yong-Xin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J McIver, Alexey V Melnik, Jessica L Metcalf, Sydney C Morgan, Jamie T Morton, Ahmad Turan Naimey, Jose A Navas-Molina, Louis Felix Nothias, Stephanie B Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary Lai Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam Rivers, Michael S Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R Spear, Austin D Swafford, Luke R Thompson, Pedro J Torres, Pauline Trinh, Anupriya Tripathi, Peter J Turnbaugh, Sabah Ul-Hasan, Justin J J van der Hooft, Fernando Vargas, Yoshiki Vázquez-Baeza, Emily Vogtmann, Max von Hippel, William Walters, Yunhu Wan, Mingxun Wang, Jonathan Warren, Kyle C Weber, Charles H D Williamson, Amy D Willis, Zhenjiang Zech Xu, Jesse R Zaneveld, Yilong Zhang, Qiyun Zhu, Rob Knight, J Gregory Caporaso | Nature Biotechnology | 2019-07-26 |
| Surprising synergy of dual translation inhibition vs. Acinetobacter baumannii and other multidrug-resistant bacterial pathogens. | Nicholas Dillon, Michelle Holland, Hannah Tsunemoto, Bryan Hancock, Ingrid Cornax, Joe Pogliano, George Sakoulas, Victor Nizet | EBioMedicine | 2019-07-25 |
| Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks. | Adam Rule, Amanda Birmingham, Cristal Zuniga, Ilkay Altintas, Shih-Cheng Huang, Rob Knight, Niema Moshiri, Mai H Nguyen, Sara Brin Rosenthal, Fernando Pérez, Peter W Rose | PLoS Computational Biology | 2019-07-25 |
| Modelling approaches for studying the microbiome. | Manish Kumar, Boyang Ji, Karsten Zengler, Jens Nielsen | Nature Microbiology | 2019-07-23 |
| Immune-orthogonal orthologues of AAV capsids and of Cas9 circumvent the immune response to the administration of gene therapy. | Ana M Moreno, Nathan Palmer, Fernando Alemán, Genghao Chen, Andrew Pla, Ning Jiang, Wei Leong Chew, Mansun Law, Prashant Mali | Nature Biomedical Engineering | 2019-07-22 |
| Author Correction: Farm-like indoor microbiota in non-farm homes protects children from asthma development. | Pirkka V Kirjavainen, Anne M Karvonen, Rachel I Adams, Martin Täubel, Marjut Roponen, Pauli Tuoresmäki, Georg Loss, Balamuralikrishna Jayaprakash, Martin Depner, Markus Johannes Ege, Harald Renz, Petra Ina Pfefferle, Bianca Schaub, Roger Lauener, Anne Hyvärinen, Rob Knight, Dick J J Heederik, Erika von Mutius, Juha Pekkanen | Nature Medicine | 2019-07-19 |
| Human Milk Oligosaccharide Composition Is Associated With Excessive Weight Gain During Exclusive Breastfeeding-An Explorative Study. | Melanie W Larsson, Mads V Lind, Rikke Pilmann Laursen, Chloe Yonemitsu, Anni Larnkjær, Christian Mølgaard, Kim F Michaelsen, Lars Bode | Frontiers In Pediatrics | 2019-07-18 |
| Safety and Efficacy of Ceftazidime-Avibactam Plus Metronidazole in the Treatment of Children ≥3 Months to <18 Years With Complicated Intra-Abdominal Infection: Results From a Phase 2, Randomized, Controlled Trial. | John S Bradley, Helen Broadhurst, Karen Cheng, Maria Mendez, Paul Newell, Martin Prchlik, Gregory G Stone, Angela K Talley, Margaret Tawadrous, Dalia Wajsbrot, Katrina Yates, Antonina Zuzova, Annie Gardner | The Pediatric Infectious Disease Journal | 2019-07-16 |
| MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools. | Madeleine Ernst, Kyo Bin Kang, Andrés Mauricio Caraballo-Rodríguez, Louis-Felix Nothias, Joe Wandy, Christopher Chen, Mingxun Wang, Simon Rogers, Marnix H Medema, Pieter C Dorrestein, Justin J J van der Hooft | Metabolites | 2019-07-16 |
| Inflammasome inhibition blocks cardiac glycoside cell toxicity. | Doris L LaRock, Jenna S Sands, Ethan Ettouati, Marine Richard, Paul J Bushway, Eric D Adler, Victor Nizet, Christopher N LaRock | The Journal Of Biological Chemistry | 2019-07-12 |
| Meroindenon and Merochlorins E and F, Antibacterial Meroterpenoids from a Marine-Derived Sediment Bacterium of the Genus . | Min-Ji Ryu, Sunghoon Hwang, Sojeong Kim, Inho Yang, Dong-Chan Oh, Sang-Jip Nam, William Fenical | Organic Letters | 2019-07-12 |
| The molecular architecture of engulfment during sporulation. | Kanika Khanna, Javier Lopez-Garrido, Ziyi Zhao, Reika Watanabe, Yuan Yuan, Joseph Sugie, Kit Pogliano, Elizabeth Villa | ELife | 2019-07-08 |
| Inhibition of Pathogen Adhesion by Bacterial Outer Membrane-Coated Nanoparticles. | Yue Zhang, Yijie Chen, Christopher Lo, Jia Zhuang, Pavimol Angsantikul, Qiangzhe Zhang, Xiaoli Wei, Zhidong Zhou, Marygorret Obonyo, Ronnie H Fang, Weiwei Gao, Liangfang Zhang | Angewandte Chemie (International Ed. In English) | 2019-07-04 |
| Cellular responses to reactive oxygen species are predicted from molecular mechanisms. | Laurence Yang, Nathan Mih, Amitesh Anand, Joon Ho Park, Justin Tan, James T Yurkovich, Jonathan M Monk, Colton J Lloyd, Troy E Sandberg, Sang Woo Seo, Donghyuk Kim, Anand V Sastry, Patrick Phaneuf, Ye Gao, Jared T Broddrick, Ke Chen, David Heckmann, Richard Szubin, Ying Hefner, Adam M Feist, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2019-07-03 |
| Hyaluronan Degradation by Cemip Regulates Host Defense against Staphylococcus aureus Skin Infection. | Tatsuya Dokoshi, Ling-Juan Zhang, Fengwu Li, Teruaki Nakatsuji, Anna Butcher, Hiroyuki Yoshida, Masayuki Shimoda, Yasunori Okada, Richard L Gallo | Cell Reports | 2019-07-03 |
| Associations between fungal and bacterial microbiota of airways and asthma endotypes. | Anukriti Sharma, Bharathi Laxman, Edward T Naureckas, D Kyle Hogarth, Anne I Sperling, Julian Solway, Carole Ober, Jack A Gilbert, Steven R White | The Journal Of Allergy And Clinical Immunology | 2019-07-03 |
| Assessing Specialized Metabolite Diversity in the Cosmopolitan Plant Genus L. | Madeleine Ernst, Louis-Félix Nothias, Justin J J van der Hooft, Ricardo R Silva, C Haris Saslis-Lagoudakis, Olwen M Grace, Karen Martinez-Swatson, Gustavo Hassemer, Luís A Funez, Henrik T Simonsen, Marnix H Medema, Dan Staerk, Niclas Nilsson, Paola Lovato, Pieter C Dorrestein, Nina Rønsted | Frontiers In Plant Science | 2019-07-02 |
| Associations of the Fecal Microbial Proteome Composition and Proneness to Diet-induced Obesity. | Hao Q Tran, Robert H Mills, Nicole V Peters, Mary K Holder, Geert J de Vries, Rob Knight, Benoit Chassaing, David J Gonzalez, Andrew T Gewirtz | Molecular & Cellular Proteomics : MCP | 2019-07-01 |
| Chronic Joint Pain 3 Years after Chikungunya Virus Infection Largely Characterized by Relapsing-remitting Symptoms. | Sarah R Tritsch, Liliana Encinales, Nelly Pacheco, Andres Cadena, Carlos Cure, Elizabeth McMahon, Hugh Watson, Alexandra Porras Ramirez, Alejandro Rico Mendoza, Guangzhao Li, Kunal Khurana, Juan Jose Jaller-Raad, Stella Mejia Castillo, Onaldo Barrios Taborda, Juan Jose Jaller-Char, Lil Avendaño Echavez, Dennys Jiménez, Andres Gonzalez Coba, Magda Alarcon Gomez, Dores Ariza Orozco, Eyda Bravo, Victor Martinez, Brenda Guerra, Gary Simon, Gary S Firestein, Aileen Y Chang | The Journal Of Rheumatology | 2019-07-01 |
| Quantitative analysis of the yeast pheromone pathway. | James P Shellhammer, Amy E Pomeroy, Yang Li, Lorena Dujmusic, Timothy C Elston, Nan Hao, Henrik G Dohlman | Yeast (Chichester, England) | 2019-06-27 |
| A antibiotic modulates human skin microbiota composition in hair follicles. | Jan Claesen, Jennifer B Spagnolo, Stephany Flores Ramos, Kenji L Kurita, Allyson L Byrd, Alexander A Aksenov, Alexey V Melnik, Weng R Wong, Shuo Wang, Ryan D Hernandez, Mohamed S Donia, Pieter C Dorrestein, Heidi H Kong, Julia A Segre, Roger G Linington, Michael A Fischbach, Katherine P Lemon | Science Translational Medicine | 2019-06-27 |
| Surfactant Charge Modulates Structure and Stability of Lipase-Embedded Monolayers at Marine-Relevant Aerosol Surfaces. | Man Luo, Abigail C Dommer, Jamie M Schiffer, Donald J Rez, Andrew R Mitchell, Rommie E Amaro, Vicki H Grassian | Langmuir : The ACS Journal Of Surfaces And Colloids | 2019-06-25 |
| redbiom: a Rapid Sample Discovery and Feature Characterization System. | Daniel McDonald, Benjamin Kaehler, Antonio Gonzalez, Jeff DeReus, Gail Ackermann, Clarisse Marotz, Gavin Huttley, Rob Knight | MSystems | 2019-06-25 |
| IL-4Rα Blockade by Dupilumab Decreases Staphylococcus aureus Colonization and Increases Microbial Diversity in Atopic Dermatitis. | Chris Callewaert, Teruaki Nakatsuji, Rob Knight, Tomasz Kosciolek, Alison Vrbanac, Paul Kotol, Marius Ardeleanu, Thomas Hultsch, Emma Guttman-Yassky, Robert Bissonnette, Jonathan I Silverberg, James Krueger, Alan Menter, Neil M H Graham, Gianluca Pirozzi, Jennifer D Hamilton, Richard L Gallo | The Journal Of Investigative Dermatology | 2019-06-25 |
| Quantifying and Understanding Well-to-Well Contamination in Microbiome Research. | Jeremiah J Minich, Jon G Sanders, Amnon Amir, Greg Humphrey, Jack A Gilbert, Rob Knight | MSystems | 2019-06-25 |
| Treatment of Multidrug-Resistant Vancomycin-Resistant Enterococcus faecium Hardware-Associated Vertebral Osteomyelitis with Oritavancin plus Ampicillin. | Samira Dahesh, Brian Wong, Victor Nizet, George Sakoulas, Truc T Tran, Samuel L Aitken | Antimicrobial Agents And Chemotherapy | 2019-06-24 |
| EcoFABs: advancing microbiome science through standardized fabricated ecosystems. | Karsten Zengler, Kirsten Hofmockel, Nitin S Baliga, Scott W Behie, Hans C Bernstein, James B Brown, José R Dinneny, Sheri A Floge, Samuel P Forry, Matthias Hess, Scott A Jackson, Christer Jansson, Stephen R Lindemann, Jennifer Pett-Ridge, Costas Maranas, Ophelia S Venturelli, Matthew D Wallenstein, Elizabeth A Shank, Trent R Northen | Nature Methods | 2019-06-23 |
| Insights into the evolving role of the gut microbiome in nonalcoholic fatty liver disease: rationale and prospects for therapeutic intervention. | Marialena Mouzaki, Rohit Loomba | Therapeutic Advances In Gastroenterology | 2019-06-23 |
| Proliferative memory SAMHD1low CD4+ T cells harbour high levels of HIV-1 with compartmentalized viral populations. | Lylia Hani, Antoine Chaillon, Marie-Laure Nere, Nicolas Ruffin, Joudy Alameddine, Maud Salmona, José-Luiz Lopez Zaragoza, Davey M Smith, Olivier Schwartz, Jean-Daniel Lelièvre, Constance Delaugerre, Yves Lévy, Nabila Seddiki | PLoS Pathogens | 2019-06-20 |
| Establishing microbial composition measurement standards with reference frames. | James T Morton, Clarisse Marotz, Alex Washburne, Justin Silverman, Livia S Zaramela, Anna Edlund, Karsten Zengler, Rob Knight | Nature Communications | 2019-06-20 |
| MRI Assessment of Treatment Response in HIV-associated NAFLD: A Randomized Trial of a Stearoyl-Coenzyme-A-Desaturase-1 Inhibitor (ARRIVE Trial). | Veeral H Ajmera, Edward Cachay, Christian Ramers, Irine Vodkin, Shirin Bassirian, Seema Singh, Neeraj Mangla, Richele Bettencourt, Jeannette L Aldous, Daniel Park, Daniel Lee, Jennifer Blanchard, Adrija Mamidipalli, Andrew Boehringer, Saima Aslam, Olof Dahlqvist Leinhard, Lisa Richards, Claude Sirlin, Rohit Loomba | Hepatology (Baltimore, Md.) | 2019-06-18 |
| An Atlas of Human Glycosylation Pathways Enables Display of the Human Glycome by Gene Engineered Cells. | Yoshiki Narimatsu, Hiren J Joshi, Rebecca Nason, Julie Van Coillie, Richard Karlsson, Lingbo Sun, Zilu Ye, Yen-Hsi Chen, Katrine T Schjoldager, Catharina Steentoft, Sanae Furukawa, Barbara A Bensing, Paul M Sullam, Andrew J Thompson, James C Paulson, Christian Büll, Gosse J Adema, Ulla Mandel, Lars Hansen, Eric Paul Bennett, Ajit Varki, Sergey Y Vakhrushev, Zhang Yang, Henrik Clausen | Molecular Cell | 2019-06-18 |
| Higher-fitness yeast genotypes are less robust to deleterious mutations. | Milo S Johnson, Alena Martsul, Sergey Kryazhimskiy, Michael M Desai | Science (New York, N.Y.) | 2019-06-18 |
| Farm-like indoor microbiota in non-farm homes protects children from asthma development. | Pirkka V Kirjavainen, Anne M Karvonen, Rachel I Adams, Martin Täubel, Marjut Roponen, Pauli Tuoresmäki, Georg Loss, Balamuralikrishna Jayaprakash, Martin Depner, Markus Johannes Ege, Harald Renz, Petra Ina Pfefferle, Bianca Schaub, Roger Lauener, Anne Hyvärinen, Rob Knight, Dick J J Heederik, Erika von Mutius, Juha Pekkanen | Nature Medicine | 2019-06-17 |
| Red Sea SAR11 and Single-Cell Genomes Reflect Globally Distributed Pangenomes. | Luke R Thompson, Mohamed F Haroon, Ahmed A Shibl, Matt J Cahill, David K Ngugi, Gareth J Williams, James T Morton, Rob Knight, Kelly D Goodwin, Ulrich Stingl | Applied And Environmental Microbiology | 2019-06-17 |
| Principles of rhythmicity emerging from cyanobacteria. | Susan S Golden | The European Journal Of Neuroscience | 2019-06-17 |
| The impact of skin care products on skin chemistry and microbiome dynamics. | Amina Bouslimani, Ricardo da Silva, Tomasz Kosciolek, Stefan Janssen, Chris Callewaert, Amnon Amir, Kathleen Dorrestein, Alexey V Melnik, Livia S Zaramela, Ji-Nu Kim, Gregory Humphrey, Tara Schwartz, Karenina Sanders, Caitriona Brennan, Tal Luzzatto-Knaan, Gail Ackermann, Daniel McDonald, Karsten Zengler, Rob Knight, Pieter C Dorrestein | BMC Biology | 2019-06-12 |
| Multiantigenic Nanotoxoids for Antivirulence Vaccination against Antibiotic-Resistant Gram-Negative Bacteria. | Xiaoli Wei, Danni Ran, Anaamika Campeau, Crystal Xiao, Jiarong Zhou, Diana Dehaini, Yao Jiang, Ashley V Kroll, Qiangzhe Zhang, Weiwei Gao, David J Gonzalez, Ronnie H Fang, Liangfang Zhang | Nano Letters | 2019-06-11 |
| Ground beef microbiome changes with antimicrobial decontamination interventions and product storage. | Margaret D Weinroth, Brianna C Britton, Kathryn R McCullough, Jennifer N Martin, Ifigenia Geornaras, Rob Knight, Keith E Belk, Jessica L Metcalf | PloS One | 2019-06-05 |
| Investigation of Premyrsinane and Myrsinane Esters in Euphorbia cupanii and Euphobia pithyusa with MS2LDA and Combinatorial Molecular Network Annotation Propagation. | Mélissa Nothias-Esposito, Louis Felix Nothias, Ricardo R Da Silva, Pascal Retailleau, Zheng Zhang, Pieter Leyssen, Fanny Roussi, David Touboul, Julien Paolini, Pieter C Dorrestein, Marc Litaudon | Journal Of Natural Products | 2019-06-05 |
| Is there convergence of gut microbes in blood-feeding vertebrates? | Se Jin Song, Jon G Sanders, Daniel T Baldassarre, Jaime A Chaves, Nicholas S Johnson, Antoinette J Piaggio, Matthew J Stuckey, Eva Nováková, Jessica L Metcalf, Bruno B Chomel, Alvaro Aguilar-Setién, Rob Knight, Valerie J McKenzie | Philosophical Transactions Of The Royal Society Of London. Series B, Biological Sciences | 2019-06-03 |
| BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs. | Dmitry Meleshko, Hosein Mohimani, Vittorio Tracanna, Iman Hajirasouliha, Marnix H Medema, Anton Korobeynikov, Pavel A Pevzner | Genome Research | 2019-06-03 |
| Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism. | Chuankai Cheng, Edward J O'Brien, Douglas McCloskey, Jose Utrilla, Connor Olson, Ryan A LaCroix, Troy E Sandberg, Adam M Feist, Bernhard O Palsson, Zachary A King | PLoS Computational Biology | 2019-06-03 |
| Concurrent measurement of microbiome and allergens in the air of bedrooms of allergy disease patients in the Chicago area. | Miles Richardson, Neil Gottel, Jack A Gilbert, Julian Gordon, Prasanthi Gandhi, Rachel Reboulet, Jarrad T Hampton-Marcell | Microbiome | 2019-06-03 |
| Detecting genetic interactions using parallel evolution in experimental populations. | Kaitlin J Fisher, Sergey Kryazhimskiy, Gregory I Lang | Philosophical Transactions Of The Royal Society Of London. Series B, Biological Sciences | 2019-06-03 |
| Review article: emerging role of the gut microbiome in the progression of nonalcoholic fatty liver disease and potential therapeutic implications. | Saumya Jayakumar, Rohit Loomba | Alimentary Pharmacology & Therapeutics | 2019-05-31 |
| TOX and TOX2 transcription factors cooperate with NR4A transcription factors to impose CD8 T cell exhaustion. | Hyungseok Seo, Joyce Chen, Edahí González-Avalos, Daniela Samaniego-Castruita, Arundhoti Das, Yueqiang H Wang, Isaac F López-Moyado, Romain O Georges, Wade Zhang, Atsushi Onodera, Cheng-Jang Wu, Li-Fan Lu, Patrick G Hogan, Avinash Bhandoola, Anjana Rao | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2019-05-31 |
| CRTAM Shapes the Gut Microbiota and Enhances the Severity of Infection. | Araceli Perez-Lopez, Sean-Paul Nuccio, Irina Ushach, Robert A Edwards, Rachna Pahu, Steven Silva, Albert Zlotnik, Manuela Raffatellu | Journal Of Immunology (Baltimore, Md. : 1950) | 2019-05-29 |
| Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases. | Jason Lloyd-Price, Cesar Arze, Ashwin N Ananthakrishnan, Melanie Schirmer, Julian Avila-Pacheco, Tiffany W Poon, Elizabeth Andrews, Nadim J Ajami, Kevin S Bonham, Colin J Brislawn, David Casero, Holly Courtney, Antonio Gonzalez, Thomas G Graeber, A Brantley Hall, Kathleen Lake, Carol J Landers, Himel Mallick, Damian R Plichta, Mahadev Prasad, Gholamali Rahnavard, Jenny Sauk, Dmitry Shungin, Yoshiki Vázquez-Baeza, Richard A White, , Jonathan Braun, Lee A Denson, Janet K Jansson, Rob Knight, Subra Kugathasan, Dermot P B McGovern, Joseph F Petrosino, Thaddeus S Stappenbeck, Harland S Winter, Clary B Clish, Eric A Franzosa, Hera Vlamakis, Ramnik J Xavier, Curtis Huttenhower | Nature | 2019-05-29 |
| Nature's Combinatorial Biosynthesis Produces Vatiamides A-F. | Nathan A Moss, Grant Seiler, Tiago F Leão, Gabriel Castro-Falcón, Lena Gerwick, Chambers C Hughes, William H Gerwick | Angewandte Chemie (International Ed. In English) | 2019-05-28 |
| Community ecology as a framework for human microbiome research. | Jack A Gilbert, Susan V Lynch | Nature Medicine | 2019-05-27 |
| Comparative Genome-Scale Metabolic Modeling of Metallo-Beta-Lactamase-Producing Multidrug-Resistant Clinical Isolates. | Charles J Norsigian, Heba Attia, Richard Szubin, Aymen S Yassin, Bernhard Ø Palsson, Ramy K Aziz, Jonathan M Monk | Frontiers In Cellular And Infection Microbiology | 2019-05-24 |
| Comparison of Three Nucleic Acid Amplification Tests and Culture for Detection of Group B from Enrichment Broth. | Ji H Shin, David T Pride | Journal Of Clinical Microbiology | 2019-05-24 |
| Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary. | Clarisse Marotz, Anukriti Sharma, Greg Humphrey, Neil Gottel, Christopher Daum, Jack A Gilbert, Emiley Eloe-Fadrosh, Rob Knight | BioTechniques | 2019-05-24 |
| Bacterial Tetrabromopyrrole Debrominase Shares a Reductive Dehalogenation Strategy with Human Thyroid Deiodinase. | Jonathan R Chekan, Ga Young Lee, Abrahim El Gamal, Trevor N Purdy, K N Houk, Bradley S Moore | Biochemistry | 2019-05-22 |
| Cognitive Trajectory Phenotypes in Human Immunodeficiency Virus-Infected Patients. | Raha M Dastgheyb, Ned Sacktor, Donald Franklin, Scott Letendre, Thomas Marcotte, Robert Heaton, Igor Grant, Justin C McArthur, Leah H Rubin, Norman J Haughey | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2019-05-21 |
| Cefazolin and Ertapenem Salvage Therapy Rapidly Clears Persistent Methicillin-Susceptible Staphylococcus aureus Bacteremia. | Erlinda R Ulloa, Kavindra V Singh, Matthew Geriak, Fadi Haddad, Barbara E Murray, Victor Nizet, George Sakoulas | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2019-05-20 |
| Gut microbiota in wild and captive Guizhou snub-nosed monkeys, Rhinopithecus brelichi. | Vanessa L Hale, Chia L Tan, Kefeng Niu, Yeqin Yang, Qikun Zhang, Rob Knight, Katherine R Amato | American Journal Of Primatology | 2019-05-20 |
| Relationship between human leukocyte antigen alleles and risk of Kaposi's sarcoma in Cameroon. | Elena M Cornejo Castro, Brian J Morrison, Vickie A Marshall, Nazzarena Labo, Wendell J Miley, Nathan Clements, George Nelson, Paul Ndom, Kristen Stolka, Jennifer J Hemingway-Foday, Mahamat Abassora, Xiaojiang Gao, Jennifer S Smith, Mary Carrington, Denise Whitby | Genes And Immunity | 2019-05-20 |
| Primary transcriptome and translatome analysis determines transcriptional and translational regulatory elements encoded in the Streptomyces clavuligerus genome. | Soonkyu Hwang, Namil Lee, Yujin Jeong, Yongjae Lee, Woori Kim, Suhyung Cho, Bernhard O Palsson, Byung-Kwan Cho | Nucleic Acids Research | 2019-05-17 |
| Synthetic Biology Tools for Novel Secondary Metabolite Discovery in . | Namil Lee, Soonkyu Hwang, Yongjae Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | Journal Of Microbiology And Biotechnology | 2019-05-17 |
| Integrated Analysis of Human Milk Microbiota With Oligosaccharides and Fatty Acids in the CHILD Cohort. | Shirin Moossavi, Faisal Atakora, Kozeta Miliku, Shadi Sepehri, Bianca Robertson, Qing Ling Duan, Allan B Becker, Piushkumar J Mandhane, Stuart E Turvey, Theo J Moraes, Diana L Lefebvre, Malcolm R Sears, Padmaja Subbarao, Catherine J Field, Lars Bode, Ehsan Khafipour, Meghan B Azad | Frontiers In Nutrition | 2019-05-16 |
| Sex-specific effects of microbiome perturbations on cerebral Aβ amyloidosis and microglia phenotypes. | Hemraj B Dodiya, Thomas Kuntz, Shabana M Shaik, Caroline Baufeld, Jeffrey Leibowitz, Xulun Zhang, Neil Gottel, Xiaoqiong Zhang, Oleg Butovsky, Jack A Gilbert, Sangram S Sisodia | The Journal Of Experimental Medicine | 2019-05-16 |
| Malaria vector species in Amazonian Peru co-occur in larval habitats but have distinct larval microbial communities. | Catharine Prussing, Marlon P Saavedra, Sara A Bickersmith, Freddy Alava, Mitchel Guzmán, Edgar Manrique, Gabriel Carrasco-Escobar, Marta Moreno, Dionicia Gamboa, Joseph M Vinetz, Jan E Conn | PLoS Neglected Tropical Diseases | 2019-05-15 |
| Comparative Genomics of Cyanobacterial Symbionts Reveals Distinct, Specialized Metabolism in Tropical Sponges. | Michelle A Schorn, Peter A Jordan, Sheila Podell, Jessica M Blanton, Vinayak Agarwal, Jason S Biggs, Eric E Allen, Bradley S Moore | MBio | 2019-05-14 |
| Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults. | Jacobo de la Cuesta-Zuluaga, Scott T Kelley, Yingfeng Chen, Juan S Escobar, Noel T Mueller, Ruth E Ley, Daniel McDonald, Shi Huang, Austin D Swafford, Rob Knight, Varykina G Thackray | MSystems | 2019-05-14 |
| Lipocalin 2: A New Antimicrobial in Mast Cells. | Yu-Ling Chang, Zhenping Wang, Satomi Igawa, Jae Eun Choi, Tyler Werbel, Anna Di Nardo | International Journal Of Molecular Sciences | 2019-05-14 |
| A Simple Microbiome in the European Common Cuttlefish, . | Holly L Lutz, S Tabita Ramírez-Puebla, Lisa Abbo, Amber Durand, Cathleen Schlundt, Neil R Gottel, Alexandra K Sjaarda, Roger T Hanlon, Jack A Gilbert, Jessica L Mark Welch | MSystems | 2019-05-14 |
| Major shifts in gut microbiota during development and its relationship to growth in ostriches. | Elin Videvall, Se Jin Song, Hanna M Bensch, Maria Strandh, Anel Engelbrecht, Naomi Serfontein, Olof Hellgren, Adriaan Olivier, Schalk Cloete, Rob Knight, Charlie K Cornwallis | Molecular Ecology | 2019-05-11 |
| Slow Delivery Immunization Enhances HIV Neutralizing Antibody and Germinal Center Responses via Modulation of Immunodominance. | Kimberly M Cirelli, Diane G Carnathan, Bartek Nogal, Jacob T Martin, Oscar L Rodriguez, Amit A Upadhyay, Chiamaka A Enemuo, Etse H Gebru, Yury Choe, Federico Viviano, Catherine Nakao, Matthias G Pauthner, Samantha Reiss, Christopher A Cottrell, Melissa L Smith, Raiza Bastidas, William Gibson, Amber N Wolabaugh, Mariane B Melo, Benjamin Cossette, Venkatesh Kumar, Nirav B Patel, Talar Tokatlian, Sergey Menis, Daniel W Kulp, Dennis R Burton, Ben Murrell, William R Schief, Steven E Bosinger, Andrew B Ward, Corey T Watson, Guido Silvestri, Darrell J Irvine, Shane Crotty | Cell | 2019-05-09 |
| A White-Box Machine Learning Approach for Revealing Antibiotic Mechanisms of Action. | Jason H Yang, Sarah N Wright, Meagan Hamblin, Douglas McCloskey, Miguel A Alcantar, Lars Schrübbers, Allison J Lopatkin, Sangeeta Satish, Amir Nili, Bernhard O Palsson, Graham C Walker, James J Collins | Cell | 2019-05-09 |
| Increased LIGHT expression and activation of non-canonical NF-κB are observed in gastric lesions of MyD88-deficient mice upon Helicobacter felis infection. | Raquel Mejías-Luque, Ivonne Lozano-Pope, Andreas Wanisch, Matthias Heikenwälder, Markus Gerhard, Marygorret Obonyo | Scientific Reports | 2019-05-07 |
| Transcriptional responses to DNA damage. | Erica Silva, Trey Ideker | DNA Repair | 2019-05-07 |
| A programmable fate decision landscape underlies single-cell aging in yeast. | Yang Li, Yanfei Jiang, Julie Paxman, Richard O'Laughlin, Stephen Klepin, Yuelian Zhu, Lorraine Pillus, Lev S Tsimring, Jeff Hasty, Nan Hao | Science (New York, N.Y.) | 2019-05-07 |
| Nontypeable Has Evolved Preferential Use of Acetylneuraminic Acid as a Host Adaptation. | Preston S K Ng, Christopher J Day, John M Atack, Lauren E Hartley-Tassell, Linda E Winter, Tal Marshanski, Vered Padler-Karavani, Ajit Varki, Stephen J Barenkamp, Michael A Apicella, Michael P Jennings | MBio | 2019-05-07 |
| Pharmacomicrobiomics: The Holy Grail to Variability in Drug Response? | Anukriti Sharma, Mary M Buschmann, Jack A Gilbert | Clinical Pharmacology And Therapeutics | 2019-05-07 |
| Augmentation of Urinary Lactoferrin Enhances Host Innate Immune Clearance of Uropathogenic Escherichia coli. | Kathryn A Patras, Albert D Ha, Emma Rooholfada, Joshua Olson, Satish P Ramachandra Rao, Ann E Lin, Victor Nizet | Journal Of Innate Immunity | 2019-05-03 |
| Exploring the piezotolerant/piezophilic microbial community and genomic basis of piezotolerance within the deep subsurface Deccan traps. | Avishek Dutta, Logan M Peoples, Abhishek Gupta, Douglas H Bartlett, Pinaki Sar | Extremophiles : Life Under Extreme Conditions | 2019-05-02 |
| Longitudinal homogenization of the microbiome between both occupants and the built environment in a cohort of United States Air Force Cadets. | Anukriti Sharma, Miles Richardson, Lauren Cralle, Christopher E Stamper, Juan P Maestre, Kelly A Stearns-Yoder, Teodor T Postolache, Katherine L Bates, Kerry A Kinney, Lisa A Brenner, Christopher A Lowry, Jack A Gilbert, Andrew J Hoisington | Microbiome | 2019-05-02 |
| An Experimental Group A Vaccine That Reduces Pharyngitis and Tonsillitis in a Nonhuman Primate Model. | Tania Rivera-Hernandez, Diane G Carnathan, Scott Jones, Amanda J Cork, Mark R Davies, Peter M Moyle, Istvan Toth, Michael R Batzloff, James McCarthy, Victor Nizet, David Goldblatt, Guido Silvestri, Mark J Walker | MBio | 2019-04-30 |
| Absence of Neu5Gc and Presence of Anti-Neu5Gc Antibodies in Humans-An Evolutionary Perspective. | Meghan O Altman, Pascal Gagneux | Frontiers In Immunology | 2019-04-30 |
| Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems. | Anupriya Tripathi, Zhenjiang Zech Xu, Jin Xue, Orit Poulsen, Antonio Gonzalez, Gregory Humphrey, Michael J Meehan, Alexey V Melnik, Gail Ackermann, Dan Zhou, Atul Malhotra, Gabriel G Haddad, Pieter C Dorrestein, Rob Knight | MSystems | 2019-04-30 |
| Topological and functional comparison of community detection algorithms in biological networks. | Sara Rahiminejad, Mano R Maurya, Shankar Subramaniam | BMC Bioinformatics | 2019-04-27 |
| Characterization of CA-MRSA TCH1516 exposed to nafcillin in bacteriological and physiological media. | Saugat Poudel, Hannah Tsunemoto, Michael Meehan, Richard Szubin, Connor A Olson, Anne Lamsa, Yara Seif, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M Monk, Pieter C Dorrestein, Joseph Pogliano, Rob Knight, Victor Nizet, Bernhard O Palsson, Adam M Feist | Scientific Data | 2019-04-26 |
| Clinical Data on Daptomycin plus Ceftaroline versus Standard of Care Monotherapy in the Treatment of Methicillin-Resistant Staphylococcus aureus Bacteremia. | Matthew Geriak, Fadi Haddad, Khulood Rizvi, Warren Rose, Ravina Kullar, Kerry LaPlante, Marie Yu, Logan Vasina, Krista Ouellette, Marcus Zervos, Victor Nizet, George Sakoulas | Antimicrobial Agents And Chemotherapy | 2019-04-25 |
| Metabolic basis of brain-like electrical signalling in bacterial communities. | Rosa Martinez-Corral, Jintao Liu, Arthur Prindle, Gürol M Süel, Jordi Garcia-Ojalvo | Philosophical Transactions Of The Royal Society Of London. Series B, Biological Sciences | 2019-04-23 |
| Natural variation in the roles of C. elegans autophagy components during microsporidia infection. | Keir M Balla, Vladimir Lažetić, Emily R Troemel | PloS One | 2019-04-23 |
| The extracellular matrix protects Bacillus subtilis colonies from Pseudomonas invasion and modulates plant co-colonization. | Carlos Molina-Santiago, John R Pearson, Yurena Navarro, María Victoria Berlanga-Clavero, Andrés Mauricio Caraballo-Rodriguez, Daniel Petras, María Luisa García-Martín, Gaelle Lamon, Birgit Haberstein, Francisco M Cazorla, Antonio de Vicente, Antoine Loquet, Pieter C Dorrestein, Diego Romero | Nature Communications | 2019-04-23 |
| Household composition and the infant fecal microbiome: The INSPIRE study. | Avery A Lane, Michelle K McGuire, Mark A McGuire, Janet E Williams, Kimberly A Lackey, Edward H Hagen, Abhishek Kaul, Debela Gindola, Dubale Gebeyehu, Katherine E Flores, James A Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, Linda J Kvist, Gloria E Otoo, Juan M Rodríguez, Lorena Ruiz, Rossina G Pareja, Lars Bode, William J Price, Courtney L Meehan | American Journal Of Physical Anthropology | 2019-04-22 |
| BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data. | Jean-Christophe Lachance, Colton J Lloyd, Jonathan M Monk, Laurence Yang, Anand V Sastry, Yara Seif, Bernhard O Palsson, Sébastien Rodrigue, Adam M Feist, Zachary A King, Pierre-Étienne Jacques | PLoS Computational Biology | 2019-04-22 |
| Microbiota-Produced -Formyl Peptide fMLF Promotes Obesity-Induced Glucose Intolerance. | Joshua Wollam, Matthew Riopel, Yong-Jiang Xu, Andrew M F Johnson, Jachelle M Ofrecio, Wei Ying, Dalila El Ouarrat, Luisa S Chan, Andrew W Han, Nadir A Mahmood, Caitlin N Ryan, Yun Sok Lee, Jeramie D Watrous, Mahendra D Chordia, Dongfeng Pan, Mohit Jain, Jerrold M Olefsky | Diabetes | 2019-04-22 |
| Should We Divide Crohn's Disease Into Ileum-Dominant and Isolated Colonic Diseases? | Parambir S Dulai, Siddharth Singh, Niels Vande Casteele, Brigid S Boland, Jesus Rivera-Nieves, Peter B Ernst, Lars Eckmann, Kim E Barrett, John T Chang, William J Sandborn | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2019-04-19 |
| Interleukin (IL)-1β and IL-10 Host Responses in Patients With Staphylococcus aureus Bacteremia Determined by Antimicrobial Therapy. | Cecilia F Volk, Sarah Burgdorf, Graham Edwardson, Victor Nizet, George Sakoulas, Warren E Rose | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2019-04-18 |
| What's Normal? Microbiomes in Human Milk and Infant Feces Are Related to Each Other but Vary Geographically: The INSPIRE Study. | Kimberly A Lackey, Janet E Williams, Courtney L Meehan, Jessica A Zachek, Elizabeth D Benda, William J Price, James A Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, Debela Gindola K, Linda J Kvist, Gloria E Otoo, Cristina García-Carral, Esther Jiménez, Lorena Ruiz, Juan M Rodríguez, Rossina G Pareja, Lars Bode, Mark A McGuire, Michelle K McGuire | Frontiers In Nutrition | 2019-04-17 |
| Rapid Germinal Center and Antibody Responses in Non-human Primates after a Single Nanoparticle Vaccine Immunization. | Colin Havenar-Daughton, Diane G Carnathan, Archana V Boopathy, Amit A Upadhyay, Ben Murrell, Samantha M Reiss, Chiamaka A Enemuo, Etse H Gebru, Yury Choe, Pallavi Dhadvai, Federico Viviano, Kirti Kaushik, Jinal N Bhiman, Bryan Briney, Dennis R Burton, Steven E Bosinger, William R Schief, Darrell J Irvine, Guido Silvestri, Shane Crotty | Cell Reports | 2019-04-16 |
| Welcome and Opening Remarks. | Lars Bode, William D Rhine | Breastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine | 2019-04-16 |
| BLANKA: an Algorithm for Blank Subtraction in Mass Spectrometry of Complex Biological Samples. | Jessica L Cleary, Gordon T Luu, Emily C Pierce, Rachel J Dutton, Laura M Sanchez | Journal Of The American Society For Mass Spectrometry | 2019-04-16 |
| Microbial and metabolic succession on common building materials under high humidity conditions. | Simon Lax, Cesar Cardona, Dan Zhao, Valerie J Winton, Gabriel Goodney, Peng Gao, Neil Gottel, Erica M Hartmann, Chris Henry, Paul M Thomas, Scott T Kelley, Brent Stephens, Jack A Gilbert | Nature Communications | 2019-04-16 |
| Cystic Fibrosis Rapid Response: Translating Multi-omics Data into Clinically Relevant Information. | Ana Georgina Cobián Güemes, Yan Wei Lim, Robert A Quinn, Douglas J Conrad, Sean Benler, Heather Maughan, Rob Edwards, Thomas Brettin, Vito Adrian Cantú, Daniel Cuevas, Rohaum Hamidi, Pieter Dorrestein, Forest Rohwer | MBio | 2019-04-16 |
| Identification of the Bacterial Biosynthetic Gene Clusters of the Oral Microbiome Illuminates the Unexplored Social Language of Bacteria during Health and Disease. | Gajender Aleti, Jonathon L Baker, Xiaoyu Tang, Ruth Alvarez, Márcia Dinis, Nini C Tran, Alexey V Melnik, Cuncong Zhong, Madeleine Ernst, Pieter C Dorrestein, Anna Edlund | MBio | 2019-04-16 |
| Intestinal and hepatic microbiota changes associated with chronic ethanol administration in mice. | Sena Bluemel, Lirui Wang, Claire Kuelbs, Kelvin Moncera, Manolito Torralba, Harinder Singh, Derrick E Fouts, Bernd Schnabl | Gut Microbes | 2019-04-14 |
| Diel population and functional synchrony of microbial communities on coral reefs. | Linda Wegley Kelly, Craig E Nelson, Andreas F Haas, Douglas S Naliboff, Sandi Calhoun, Craig A Carlson, Robert A Edwards, Michael D Fox, Mark Hatay, Maggie D Johnson, Emily L A Kelly, Yan Wei Lim, Saichetana Macherla, Zachary A Quinlan, Genivaldo Gueiros Z Silva, Mark J A Vermeij, Brian Zgliczynski, Stuart A Sandin, Jennifer E Smith, Forest Rohwer | Nature Communications | 2019-04-12 |
| The Intestinal Microbiome, Plasma Metabolome, and Liver Transcriptome: A Conspiracy Driving Hepatic Steatosis. | Wajahat Z Mehal, Rohit Loomba | Hepatology (Baltimore, Md.) | 2019-04-11 |
| The urgent need for microbiology literacy in society. | Kenneth Timmis, Ricardo Cavicchioli, José Luis Garcia, Balbina Nogales, Max Chavarría, Lisa Stein, Terry J McGenity, Nicole Webster, Brajesh K Singh, Jo Handelsman, Victor de Lorenzo, Carla Pruzzo, James Timmis, Juan Luis Ramos Martín, Willy Verstraete, Mike Jetten, Antoine Danchin, Wei Huang, Jack Gilbert, Rup Lal, Helena Santos, Sang Yup Lee, Angela Sessitsch, Paola Bonfante, Lone Gram, Raymond T P Lin, Eliora Ron, Z Ceren Karahan, Jan Roelof van der Meer, Seza Artunkal, Dieter Jahn, Lucy Harper | Environmental Microbiology | 2019-04-11 |
| Mechanism of Action of Methotrexate Against Zika Virus. | Sungjun Beck, Zhe Zhu, Michelli F Oliveira, Davey M Smith, Jeremy N Rich, Jean A Bernatchez, Jair L Siqueira-Neto | Viruses | 2019-04-10 |
| Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces. | Aleksandra Checinska Sielaff, Camilla Urbaniak, Ganesh Babu Malli Mohan, Victor G Stepanov, Quyen Tran, Jason M Wood, Jeremiah Minich, Daniel McDonald, Teresa Mayer, Rob Knight, Fathi Karouia, George E Fox, Kasthuri Venkateswaran | Microbiome | 2019-04-08 |
| Enzyme promiscuity shapes adaptation to novel growth substrates. | Gabriela I Guzmán, Troy E Sandberg, Ryan A LaCroix, Ákos Nyerges, Henrietta Papp, Markus de Raad, Zachary A King, Ying Hefner, Trent R Northen, Richard A Notebaart, Csaba Pál, Bernhard O Palsson, Balázs Papp, Adam M Feist | Molecular Systems Biology | 2019-04-08 |
| The Extracellular RNA Communication Consortium: Establishing Foundational Knowledge and Technologies for Extracellular RNA Research. | Saumya Das, , K Mark Ansel, Markus Bitzer, Xandra O Breakefield, Alain Charest, David J Galas, Mark B Gerstein, Mihir Gupta, Aleksandar Milosavljevic, Michael T McManus, Tushar Patel, Robert L Raffai, Joel Rozowsky, Matthew E Roth, Julie A Saugstad, Kendall Van Keuren-Jensen, Alissa M Weaver, Louise C Laurent | Cell | 2019-04-06 |
| Inhibition of Human Neutrophil Extracellular Trap (NET) Production by Propofol and Lipid Emulsion. | Angela Meier, Jason Chien, Laura Hobohm, Kathryn Ann Patras, Victor Nizet, Ross Corriden | Frontiers In Pharmacology | 2019-04-05 |
| A Multiscale Map of the Stem Cell State in Pancreatic Adenocarcinoma. | Nikki K Lytle, L Paige Ferguson, Nirakar Rajbhandari, Kathryn Gilroy, Raymond G Fox, Anagha Deshpande, Christian M Schürch, Michael Hamilton, Neil Robertson, Wei Lin, Pawan Noel, Martin Wartenberg, Inti Zlobec, Micha Eichmann, José A Galván, Eva Karamitopoulou, Tami Gilderman, Lourdes Adriana Esparza, Yutaka Shima, Philipp Spahn, Randall French, Nathan E Lewis, Kathleen M Fisch, Roman Sasik, Sara Brin Rosenthal, Marcie Kritzik, Daniel Von Hoff, Haiyong Han, Trey Ideker, Aniruddha J Deshpande, Andrew M Lowy, Peter D Adams, Tannishtha Reya | Cell | 2019-04-04 |
| Detection of Natural Products and Their Producers in Ocean Sediments. | Robert N Tuttle, Alyssa M Demko, Nastassia V Patin, Clifford A Kapono, Mohamed S Donia, Pieter Dorrestein, Paul R Jensen | Applied And Environmental Microbiology | 2019-04-04 |
| Primary Incidence of Hepatitis C Virus Infection Among HIV-Infected Men Who Have Sex With Men in San Diego, 2000-2015. | Antoine Chaillon, Xiaoying Sun, Edward R Cachay, David Looney, David Wyles, Richard S Garfein, Thomas C S Martin, Sonia Jain, Sanjay R Mehta, Davey M Smith, Susan J Little, Natasha K Martin | Open Forum Infectious Diseases | 2019-04-03 |
| Human Influenza A Virus Hemagglutinin Glycan Evolution Follows a Temporal Pattern to a Glycan Limit. | Meghan O Altman, Matthew Angel, Ivan Košík, Nídia S Trovão, Seth J Zost, James S Gibbs, Lorenzo Casalino, Rommie E Amaro, Scott E Hensley, Martha I Nelson, Jonathan W Yewdell | MBio | 2019-04-02 |
| A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease. | Cyrielle Caussy, Anupriya Tripathi, Greg Humphrey, Shirin Bassirian, Seema Singh, Claire Faulkner, Ricki Bettencourt, Emily Rizo, Lisa Richards, Zhenjiang Z Xu, Michael R Downes, Ronald M Evans, David A Brenner, Claude B Sirlin, Rob Knight, Rohit Loomba | Nature Communications | 2019-03-29 |
| A microcin processing peptidase-like protein of the cyanobacterium Synechococcus elongatus is essential for secretion of biofilm-promoting proteins. | Rami Parnasa, Eleonora Sendersky, Ryan Simkovsky, Hiba Waldman Ben-Asher, Susan S Golden, Rakefet Schwarz | Environmental Microbiology Reports | 2019-03-29 |
| The long noncoding RNA regulates inflammatory gene expression. | Qiong Zhang, Ti-Chun Chao, Veena S Patil, Yue Qin, Shashi Kant Tiwari, Joshua Chiou, Alexander Dobin, Chih-Ming Tsai, Zhonghan Li, Jason Dang, Shagun Gupta, Kevin Urdahl, Victor Nizet, Thomas R Gingeras, Kyle J Gaulton, Tariq M Rana | The EMBO Journal | 2019-03-27 |
| Diversity and composition of intertidal gastropod microbiomes across a major marine biogeographic boundary. | Alexander T Neu, Eric E Allen, Kaustuv Roy | Environmental Microbiology Reports | 2019-03-27 |
| Mast cell recruitment is modulated by the hairless skin microbiome. | Chia-Chi Wu, Ji-Nu Kim, Zhenping Wang, Yu-Ling Chang, Karsten Zengler, Anna Di Nardo | The Journal Of Allergy And Clinical Immunology | 2019-03-27 |
| A non-randomized trial to assess the safety, tolerability, and pharmacokinetics of posaconazole oral suspension in immunocompromised children with neutropenia. | Antonio C Arrieta, Lillian Sung, John S Bradley, C Michel Zwaan, Davis Gates, Hetty Waskin, Patricia Carmelitano, Andreas H Groll, Thomas Lehrnbecher, Eric Mangin, Amita Joshi, Nicholas A Kartsonis, Thomas J Walsh, Amanda Paschke | PloS One | 2019-03-26 |
| Dual actions of group B capsular sialic acid provide resistance to platelet-mediated antimicrobial killing. | Satoshi Uchiyama, Josh Sun, Kyoko Fukahori, Nao Ando, Mengyou Wu, Flavio Schwarz, Shoib S Siddiqui, Ajit Varki, Jamey D Marth, Victor Nizet | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2019-03-25 |
| Direct cloning and heterologous expression of natural product biosynthetic gene clusters by transformation-associated recombination. | Jia Jia Zhang, Kazuya Yamanaka, Xiaoyu Tang, Bradley S Moore | Methods In Enzymology | 2019-03-21 |
| Infection. | Sheila E Crowe | The New England Journal Of Medicine | 2019-03-21 |
| Association of dietary patterns with the gut microbiota in older, community-dwelling men. | James M Shikany, Ryan T Demmer, Abigail J Johnson, Nora F Fino, Katie Meyer, Kristine E Ensrud, Nancy E Lane, Eric S Orwoll, Deborah M Kado, Joseph M Zmuda, Lisa Langsetmo, | The American Journal Of Clinical Nutrition | 2019-03-20 |
| A Threshold Model for T-Cell Activation in the Era of Checkpoint Blockade Immunotherapy. | Kripa Guram, Sangwoo S Kim, Victoria Wu, P Dominick Sanders, Sandip Patel, Stephen P Schoenberger, Ezra E W Cohen, Si-Yi Chen, Andrew B Sharabi | Frontiers In Immunology | 2019-03-18 |
| Synthesis, bioactivity, and enzymatic modification of antibacterial thiotetromycin derivatives. | Marlene L Rothe, Jie Li, Ernesto Garibay, Bradley S Moore, Shaun M K McKinnie | Organic & Biomolecular Chemistry | 2019-03-15 |
| Effects of comorbidity burden and age on brain integrity in HIV. | Rowan Saloner, Robert K Heaton, Laura M Campbell, Anna Chen, Donald Franklin, Ronald J Ellis, Ann C Collier, Christina Marra, David B Clifford, Benjamin Gelman, Ned Sacktor, Susan Morgello, J Allen McCutchan, Scott Letendre, Igor Grant, Christine Fennema-Notestine, | AIDS (London, England) | 2019-03-15 |
| An Efficient Combination Immunotherapy for Primary Liver Cancer by Harmonized Activation of Innate and Adaptive Immunity in Mice. | Liang Wen, Bing Xin, Panyisha Wu, Chia-Hao Lin, Chuanhui Peng, Gaowei Wang, Jin Lee, Li-Fan Lu, Gen-Sheng Feng | Hepatology (Baltimore, Md.) | 2019-03-13 |
| Letrozole treatment of adult female mice results in a similar reproductive phenotype but distinct changes in metabolism and the gut microbiome compared to pubertal mice. | Pedro J Torres, Danalea V Skarra, Bryan S Ho, Lillian Sau, Arya R Anvar, Scott T Kelley, Varykina G Thackray | BMC Microbiology | 2019-03-12 |
| Minimal cells, maximal knowledge. | Jean-Christophe Lachance, Sébastien Rodrigue, Bernhard O Palsson | ELife | 2019-03-12 |
| CCL28 Is Involved in Mucosal IgA Responses, Olfaction, and Resistance to Enteric Infections. | Amanda M Burkhardt, Araceli Perez-Lopez, Irina Ushach, Jovani Catalan-Dibene, Sean-Paul Nuccio, Lawton K Chung, Marcela Hernandez-Ruiz, Christina Carnevale, Manuela Raffatellu, Albert Zlotnik | Journal Of Interferon & Cytokine Research : The Official Journal Of The International Society For Interferon And Cytokine Research | 2019-03-11 |
| Coupling S-adenosylmethionine-dependent methylation to growth: Design and uses. | Hao Luo, Anne Sofie L Hansen, Lei Yang, Konstantin Schneider, Mette Kristensen, Ulla Christensen, Hanne B Christensen, Bin Du, Emre Özdemir, Adam M Feist, Jay D Keasling, Michael K Jensen, Markus J Herrgård, Bernhard O Palsson | PLoS Biology | 2019-03-11 |
| Magnesium Flux Modulates Ribosomes to Increase Bacterial Survival. | Dong-Yeon D Lee, Leticia Galera-Laporta, Maja Bialecka-Fornal, Eun Chae Moon, Zhouxin Shen, Steven P Briggs, Jordi Garcia-Ojalvo, Gürol M Süel | Cell | 2019-03-07 |
| Refactoring the Cryptic Streptophenazine Biosynthetic Gene Cluster Unites Phenazine, Polyketide, and Nonribosomal Peptide Biochemistry. | Katherine D Bauman, Jie Li, Kazuya Murata, Simone M Mantovani, Samira Dahesh, Victor Nizet, Hanna Luhavaya, Bradley S Moore | Cell Chemical Biology | 2019-03-07 |
| Predicting proteome allocation, overflow metabolism, and metal requirements in a model acetogen. | Joanne K Liu, Colton Lloyd, Mahmoud M Al-Bassam, Ali Ebrahim, Ji-Nu Kim, Connor Olson, Alexander Aksenov, Pieter Dorrestein, Karsten Zengler | PLoS Computational Biology | 2019-03-07 |
| Divergent Aging of Isogenic Yeast Cells Revealed through Single-Cell Phenotypic Dynamics. | Meng Jin, Yang Li, Richard O'Laughlin, Philip Bittihn, Lorraine Pillus, Lev S Tsimring, Jeff Hasty, Nan Hao | Cell Systems | 2019-03-06 |
| Homophilic protein interactions facilitate bacterial aggregation and IgG-dependent complex formation by the Streptococcus canis M protein SCM. | Andreas Nerlich, Antje-Maria Lapschies, Thomas P Kohler, Ingrid Cornax, Inga Eichhorn, Oliver Goldmann, Petra Krienke, Simone Bergmann, Victor Nizet, Sven Hammerschmidt, Manfred Rohde, Marcus Fulde | Virulence | 2019-03-05 |
| Intestinal Microbiota Mediates the Susceptibility to Polymicrobial Sepsis-Induced Liver Injury by Granisetron Generation in Mice. | Shenhai Gong, Zhengzheng Yan, Zhanguo Liu, Mengwei Niu, Heng Fang, Na Li, Chenyang Huang, Lei Li, Guiming Chen, Haihua Luo, Xiaojiao Chen, Hongwei Zhou, Jingjuan Hu, Wei Yang, Qiaobing Huang, Bernd Schnabl, Ping Chang, Timothy R Billiar, Yong Jiang, Peng Chen | Hepatology (Baltimore, Md.) | 2019-03-05 |
| Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites. | Xuanji Li, Asker Daniel Brejnrod, Madeleine Ernst, Martin Rykær, Jakob Herschend, Nanna Mee Coops Olsen, Pieter C Dorrestein, Christopher Rensing, Søren Johannes Sørensen | Environment International | 2019-03-04 |
| The genetic basis for adaptation of model-designed syntrophic co-cultures. | Colton J Lloyd, Zachary A King, Troy E Sandberg, Ying Hefner, Connor A Olson, Patrick V Phaneuf, Edward J O'Brien, Jon G Sanders, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory Humphrey, Rob Knight, Adam M Feist | PLoS Computational Biology | 2019-03-01 |
| Enokitake Mushroom-like Standing Gold Nanowires toward Wearable Noninvasive Bimodal Glucose and Strain Sensing. | Qingfeng Zhai, Shu Gong, Yan Wang, Quanxia Lyu, Yiyi Liu, Yunzhi Ling, Joseph Wang, George P Simon, Wenlong Cheng | ACS Applied Materials & Interfaces | 2019-02-28 |
| Viscosin-like lipopeptides from frog skin bacteria inhibit Aspergillus fumigatus and Batrachochytrium dendrobatidis detected by imaging mass spectrometry and molecular networking. | Christian Martin H, Roberto Ibáñez, Louis-Félix Nothias, Cristopher A Boya P, Laura K Reinert, Louise A Rollins-Smith, Pieter C Dorrestein, Marcelino Gutiérrez | Scientific Reports | 2019-02-28 |
| Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month. | Nina Iszatt, Stefan Janssen, Virissa Lenters, Cecilie Dahl, Hein Stigum, Rob Knight, Siddhartha Mandal, Shyamal Peddada, Antonio González, Tore Midtvedt, Merete Eggesbø | Microbiome | 2019-02-27 |
| Suppression of the gut microbiome ameliorates age-related arterial dysfunction and oxidative stress in mice. | Vienna E Brunt, Rachel A Gioscia-Ryan, James J Richey, Melanie C Zigler, Lauren M Cuevas, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Micah L Battson, Andrew T Smithson, Andrew D Gilley, Gail Ackermann, Andrew P Neilson, Tiffany Weir, Kevin P Davy, Rob Knight, Douglas R Seals | The Journal Of Physiology | 2019-02-27 |
| Salinipeptins: Integrated Genomic and Chemical Approaches Reveal Unusual d-Amino Acid-Containing Ribosomally Synthesized and Post-Translationally Modified Peptides (RiPPs) from a Great Salt Lake Streptomyces sp. | Zhuo Shang, Jaclyn M Winter, Christopher A Kauffman, Inho Yang, William Fenical | ACS Chemical Biology | 2019-02-26 |
| Adaptive laboratory evolution of a genome-reduced Escherichia coli. | Donghui Choe, Jun Hyoung Lee, Minseob Yoo, Soonkyu Hwang, Bong Hyun Sung, Suhyung Cho, Bernhard Palsson, Sun Chang Kim, Byung-Kwan Cho | Nature Communications | 2019-02-25 |
| Wearable biosensors for healthcare monitoring. | Jayoung Kim, Alan S Campbell, Berta Esteban-Fernández de Ávila, Joseph Wang | Nature Biotechnology | 2019-02-25 |
| Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0. | Laurent Heirendt, Sylvain Arreckx, Thomas Pfau, Sebastián N Mendoza, Anne Richelle, Almut Heinken, Hulda S Haraldsdóttir, Jacek Wachowiak, Sarah M Keating, Vanja Vlasov, Stefania Magnusdóttir, Chiam Yu Ng, German Preciat, Alise Žagare, Siu H J Chan, Maike K Aurich, Catherine M Clancy, Jennifer Modamio, John T Sauls, Alberto Noronha, Aarash Bordbar, Benjamin Cousins, Diana C El Assal, Luis V Valcarcel, Iñigo Apaolaza, Susan Ghaderi, Masoud Ahookhosh, Marouen Ben Guebila, Andrejs Kostromins, Nicolas Sompairac, Hoai M Le, Ding Ma, Yuekai Sun, Lin Wang, James T Yurkovich, Miguel A P Oliveira, Phan T Vuong, Lemmer P El Assal, Inna Kuperstein, Andrei Zinovyev, H Scott Hinton, William A Bryant, Francisco J Aragón Artacho, Francisco J Planes, Egils Stalidzans, Alejandro Maass, Santosh Vempala, Michael Hucka, Michael A Saunders, Costas D Maranas, Nathan E Lewis, Thomas Sauter, Bernhard Ø Palsson, Ines Thiele, Ronan M T Fleming | Nature Protocols | 2019-02-23 |
| Human Keratinocytes Use Sphingosine 1-Phosphate and its Receptors to Communicate Staphylococcus aureus Invasion and Activate Host Defense. | Satomi Igawa, Jae Eun Choi, Zhenping Wang, Yu-Ling Chang, Chia-Chi Wu, Tyler Werbel, Akemi Ishida-Yamamoto, Anna Di Nardo | The Journal Of Investigative Dermatology | 2019-02-23 |
| Diversity and distribution of the bmp gene cluster and its Polybrominated products in the genus Pseudoalteromonas. | Julia Busch, Vinayak Agarwal, Michelle Schorn, Henrique Machado, Bradley S Moore, Greg W Rouse, Lone Gram, Paul R Jensen | Environmental Microbiology | 2019-02-22 |
| Mass Spectrometry Uncovers the Role of Surfactin as an Interspecies Recruitment Factor. | Tal Luzzatto-Knaan, Alexey V Melnik, Pieter C Dorrestein | ACS Chemical Biology | 2019-02-22 |
| Docking simulation and antibiotic discovery targeting the MlaC protein in Gram-negative bacteria. | Yu-Ming M Huang, Jason Munguia, Yinglong Miao, Victor Nizet, J Andrew McCammon | Chemical Biology & Drug Design | 2019-02-19 |
| Engineering the microbiome for animal health and conservation. | Se Jin Song, Douglas C Woodhams, Cameron Martino, Celeste Allaband, Andre Mu, Sandrine Javorschi-Miller-Montgomery, Jan S Suchodolski, Rob Knight | Experimental Biology And Medicine (Maywood, N.J.) | 2019-02-18 |
| Role of the intestinal microbiome in liver fibrosis development and new treatment strategies. | Rongrong Zhou, Xuegong Fan, Bernd Schnabl | Translational Research : The Journal Of Laboratory And Clinical Medicine | 2019-02-16 |
| Gut microbiota in liver disease: too much is harmful, nothing at all is not helpful either. | Phillipp Hartmann, Huikuan Chu, Yi Duan, Bernd Schnabl | American Journal Of Physiology. Gastrointestinal And Liver Physiology | 2019-02-15 |
| Modular epistasis and the compensatory evolution of gene deletion mutants. | José I Rojas Echenique, Sergey Kryazhimskiy, Alex N Nguyen Ba, Michael M Desai | PLoS Genetics | 2019-02-15 |
| Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome. | Robert A Quinn, Sandeep Adem, Robert H Mills, William Comstock, Lindsay DeRight Goldasich, Gregory Humphrey, Alexander A Aksenov, Alexei V Melnik, Ricardo da Silva, Gail Ackermann, Nuno Bandeira, David J Gonzalez, Doug Conrad, Anthony J O'Donoghue, Rob Knight, Pieter C Dorrestein | Microbiome | 2019-02-13 |
| Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease. | Robert H Mills, Yoshiki Vázquez-Baeza, Qiyun Zhu, Lingjing Jiang, James Gaffney, Greg Humphrey, Larry Smarr, Rob Knight, David J Gonzalez | MSystems | 2019-02-12 |
| A Novel Sparse Compositional Technique Reveals Microbial Perturbations. | Cameron Martino, James T Morton, Clarisse A Marotz, Luke R Thompson, Anupriya Tripathi, Rob Knight, Karsten Zengler | MSystems | 2019-02-12 |
| Reply to Moossavi and Azad, "Quantifying and Interpreting the Association between Early-Life Gut Microbiota Composition and Childhood Obesity". | Maggie A Stanislawski, Dana Dabelea, Brandie D Wagner, Nina Iszatt, Cecilie Dahl, Marci K Sontag, Rob Knight, Catherine A Lozupone, Merete Eggesbø | MBio | 2019-02-12 |
| Short-Chain Fatty Acids from Activate Both a Canonical and Epigenetic Inflammatory Response in Human Sebocytes. | James A Sanford, Alan M O'Neill, Christos C Zouboulis, Richard L Gallo | Journal Of Immunology (Baltimore, Md. : 1950) | 2019-02-08 |
| Uraemic syndrome of chronic kidney disease: altered remote sensing and signalling. | Sanjay K Nigam, Kevin T Bush | Nature Reviews. Nephrology | 2019-02-08 |
| Interrogation of Milk-Driven Changes to the Proteome of Intestinal Epithelial Cells by Integrated Proteomics and Glycomics. | Sinead T Morrin, Rebecca A Owens, Marie Le Berre, Jared Q Gerlach, Lokesh Joshi, Lars Bode, Jane A Irwin, Rita M Hickey | Journal Of Agricultural And Food Chemistry | 2019-02-06 |
| Anaerobic degradation of hexadecane and phenanthrene coupled to sulfate reduction by enriched consortia from northern Gulf of Mexico seafloor sediment. | Boryoung Shin, Minjae Kim, Karsten Zengler, Kuk-Jeong Chin, Will A Overholt, Lisa M Gieg, Konstantinos T Konstantinidis, Joel E Kostka | Scientific Reports | 2019-02-04 |
| Community-acquired pneumonia in children: cell-free plasma sequencing for diagnosis and management. | Lauge Farnaes, Julianne Wilke, Kathleen Ryan Loker, John S Bradley, Christopher R Cannavino, David K Hong, Alice Pong, Jennifer Foley, Nicole G Coufal | Diagnostic Microbiology And Infectious Disease | 2019-02-02 |
| Saccharoquinoline, a Cytotoxic Alkaloidal Meroterpenoid from Marine-Derived Bacterium sp. | Tu Cam Le, Eun Ju Lee, Jihye Lee, Ahreum Hong, Chae-Yoon Yim, Inho Yang, Hyukjae Choi, Jungwook Chin, Sung Jin Cho, Jaeyoung Ko, Hayoung Hwang, Sang-Jip Nam, William Fenical | Marine Drugs | 2019-02-02 |
| Cerebrospinal fluid viral escape in aviremic HIV-infected patients receiving antiretroviral therapy: prevalence, risk factors and neurocognitive effects. | Ignacio Pérez-Valero, Ronald Ellis, Robert Heaton, Reena Deutsch, Donald Franklin, David B Clifford, Ann Collier, Benjamin Gelman, Christina Marra, John Allen McCutchan, Allison Navis, Ned Sacktor, David Simpson, Igor Grant, Scott Letendre | AIDS (London, England) | 2019-02-01 |
| Quantitative Multiplex Substrate Profiling of Peptidases by Mass Spectrometry. | John D Lapek, Zhenze Jiang, Jacob M Wozniak, Elena Arutyunova, Steven C Wang, M Joanne Lemieux, David J Gonzalez, Anthony J O'Donoghue | Molecular & Cellular Proteomics : MCP | 2019-01-31 |
| Calour: an Interactive, Microbe-Centric Analysis Tool. | Zhenjiang Zech Xu, Amnon Amir, Jon Sanders, Qiyun Zhu, James T Morton, Molly C Bletz, Anupriya Tripathi, Shi Huang, Daniel McDonald, Lingjing Jiang, Rob Knight | MSystems | 2019-01-29 |
| Lugdunomycin, an Angucycline-Derived Molecule with Unprecedented Chemical Architecture. | Changsheng Wu, Helga U van der Heul, Alexey V Melnik, Jens Lübben, Pieter C Dorrestein, Adriaan J Minnaard, Young Hae Choi, Gilles P van Wezel | Angewandte Chemie (International Ed. In English) | 2019-01-29 |
| Pseudogene repair driven by selection pressure applied in experimental evolution. | Amitesh Anand, Connor A Olson, Laurence Yang, Anand V Sastry, Edward Catoiu, Kumari Sonal Choudhary, Patrick V Phaneuf, Troy E Sandberg, Sibei Xu, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O Palsson | Nature Microbiology | 2019-01-28 |
| Bovine colostrum-driven modulation of intestinal epithelial cells for increased commensal colonisation. | Sinead T Morrin, Jonathan A Lane, Mariarosaria Marotta, Lars Bode, Stephen D Carrington, Jane A Irwin, Rita M Hickey | Applied Microbiology And Biotechnology | 2019-01-26 |
| The y-ome defines the 35% of Escherichia coli genes that lack experimental evidence of function. | Sankha Ghatak, Zachary A King, Anand Sastry, Bernhard O Palsson | Nucleic Acids Research | 2019-01-26 |
| Glucose 6-phosphate dehydrogenase 6-phosphogluconolactonase: characterization of the Plasmodium vivax enzyme and inhibitor studies. | Kristina Haeussler, Isabell Berneburg, Esther Jortzik, Julia Hahn, Mahsa Rahbari, Norma Schulz, Janina Preuss, Viktor A Zapol'skii, Lars Bode, Anthony B Pinkerton, Dieter E Kaufmann, Stefan Rahlfs, Katja Becker | Malaria Journal | 2019-01-25 |
| Insights into Thiotemplated Pyrrole Biosynthesis Gained from the Crystal Structure of Flavin-Dependent Oxidase in Complex with Carrier Protein. | Hem R Thapa, John M Robbins, Bradley S Moore, Vinayak Agarwal | Biochemistry | 2019-01-23 |
| Challenges in Quantifying Cytosine Methylation in the HIV Provirus. | Sarah A LaMere, Antoine Chaillon, Christina Huynh, Davey M Smith, Sara Gianella | MBio | 2019-01-22 |
| Exposure to a Healthy Gut Microbiome Protects Against Reproductive and Metabolic Dysregulation in a PCOS Mouse Model. | Pedro J Torres, Bryan S Ho, Pablo Arroyo, Lillian Sau, Annie Chen, Scott T Kelley, Varykina G Thackray | Endocrinology | 2019-01-22 |
| Role of the microbiome in human development. | Maria Gloria Dominguez-Bello, Filipa Godoy-Vitorino, Rob Knight, Martin J Blaser | Gut | 2019-01-22 |
| Dilute bleach baths used for treatment of atopic dermatitis are not antimicrobial in vitro. | Yu Sawada, Yun Tong, Mariam Barangi, Tissa Hata, Michael R Williams, Teruaki Nakatsuji, Richard L Gallo | The Journal Of Allergy And Clinical Immunology | 2019-01-21 |
| Essential metabolism for a minimal cell. | Marian Breuer, Tyler M Earnest, Chuck Merryman, Kim S Wise, Lijie Sun, Michaela R Lynott, Clyde A Hutchison, Hamilton O Smith, John D Lapek, David J Gonzalez, Valérie de Crécy-Lagard, Drago Haas, Andrew D Hanson, Piyush Labhsetwar, John I Glass, Zaida Luthey-Schulten | ELife | 2019-01-18 |
| Barriers to Minimizing Respiratory Viral Testing in Bronchiolitis: Physician Perceptions on Testing Practices. | Maria Z Huang, Kyung E Rhee, Lauren Gist, Erin S Fisher | Hospital Pediatrics | 2019-01-15 |
| Antagonistic paralogs control a switch between growth and pathogen resistance in C. elegans. | Kirthi C Reddy, Tal Dror, Ryan S Underwood, Guled A Osman, Corrina R Elder, Christopher A Desjardins, Christina A Cuomo, Michalis Barkoulas, Emily R Troemel | PLoS Pathogens | 2019-01-14 |
| Crystal structure of a Thermus aquaticus diversity-generating retroelement variable protein. | Sumit Handa, Kharissa L Shaw, Partho Ghosh | PloS One | 2019-01-10 |
| The etiology and management of recurrent urinary tract infections in postmenopausal women. | Carrie Jung, Linda Brubaker | Climacteric : The Journal Of The International Menopause Society | 2019-01-09 |
| DynamicME: dynamic simulation and refinement of integrated models of metabolism and protein expression. | Laurence Yang, Ali Ebrahim, Colton J Lloyd, Michael A Saunders, Bernhard O Palsson | BMC Systems Biology | 2019-01-09 |
| A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types. | Yara Seif, Jonathan M Monk, Nathan Mih, Hannah Tsunemoto, Saugat Poudel, Cristal Zuniga, Jared Broddrick, Karsten Zengler, Bernhard O Palsson | PLoS Computational Biology | 2019-01-09 |
| To NET or not to NET:current opinions and state of the science regarding the formation of neutrophil extracellular traps. | Sebastian Boeltz, Poorya Amini, Hans-Joachim Anders, Felipe Andrade, Rostyslav Bilyy, Simon Chatfield, Iwona Cichon, Danielle M Clancy, Jyaysi Desai, Tetiana Dumych, Nishant Dwivedi, Rachael Ann Gordon, Jonas Hahn, Andrés Hidalgo, Markus H Hoffmann, Mariana J Kaplan, Jason S Knight, Elzbieta Kolaczkowska, Paul Kubes, Moritz Leppkes, Angelo A Manfredi, Seamus J Martin, Christian Maueröder, Norma Maugeri, Ioannis Mitroulis, Luis E Munoz, Daigo Nakazawa, Indira Neeli, Victor Nizet, Elmar Pieterse, Marko Z Radic, Christiane Reinwald, Konstantinos Ritis, Patrizia Rovere-Querini, Michal Santocki, Christine Schauer, Georg Schett, Mark Jay Shlomchik, Hans-Uwe Simon, Panagiotis Skendros, Darko Stojkov, Peter Vandenabeele, Tom Vanden Berghe, Johan van der Vlag, Ljubomir Vitkov, Maren von Köckritz-Blickwede, Shida Yousefi, Alexander Zarbock, Martin Herrmann | Cell Death And Differentiation | 2019-01-08 |
| Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi. | Jason M Peters, Byoung-Mo Koo, Ramiro Patino, Gary E Heussler, Cameron C Hearne, Jiuxin Qu, Yuki F Inclan, John S Hawkins, Candy H S Lu, Melanie R Silvis, M Michael Harden, Hendrik Osadnik, Joseph E Peters, Joanne N Engel, Rachel J Dutton, Alan D Grossman, Carol A Gross, Oren S Rosenberg | Nature Microbiology | 2019-01-07 |
| Probiotic fengycins dis(Agr)ee with Staphylococcus aureus colonization. | Lawton K Chung, Manuela Raffatellu | Cell Research | 2019-01-05 |
| A longitudinal systems immunologic investigation of acute Zika virus infection in an individual infected while traveling to Caracas, Venezuela. | Aaron F Carlin, Jinsheng Wen, Edward A Vizcarra, Melanie McCauley, Antoine Chaillon, Kevan Akrami, Cheryl Kim, Annie Elong Ngono, Maria Luz Lara-Marquez, Davey M Smith, Christopher K Glass, Robert T Schooley, Christopher Benner, Sujan Shresta | PLoS Neglected Tropical Diseases | 2018-12-31 |
| A Blueprint for Systems Biology. | Trey Ideker, Leroy Hood | Clinical Chemistry | 2018-12-28 |
| Age-Related Loss of Innate Immune Antimicrobial Function of Dermal Fat Is Mediated by Transforming Growth Factor Beta. | Ling-Juan Zhang, Stella Xiang Chen, Christian F Guerrero-Juarez, Fengwu Li, Yun Tong, Yuqiong Liang, Marc Liggins, Xu Chen, Hao Chen, Min Li, Tissa Hata, Ye Zheng, Maksim V Plikus, Richard L Gallo | Immunity | 2018-12-26 |
| Inpatient Mortality After Endoscopic Sinus Surgery for Invasive Fungal Rhinosinusitis. | Brittany N Burton, Aria Jafari, Betial Asmerom, Matthew W Swisher, Rodney A Gabriel, Adam DeConde | The Annals Of Otology, Rhinology, And Laryngology | 2018-12-25 |
| Flavin-based metabolic cycles are integral features of growth and division in single yeast cells. | Bridget L Baumgartner, Richard O'Laughlin, Meng Jin, Lev S Tsimring, Nan Hao, Jeff Hasty | Scientific Reports | 2018-12-21 |
| Identification of Microbial Dark Matter in Antarctic Environments. | Jeff S Bowman | Frontiers In Microbiology | 2018-12-19 |
| Reframing gene essentiality in terms of adaptive flexibility. | Gabriela I Guzmán, Connor A Olson, Ying Hefner, Patrick V Phaneuf, Edward Catoiu, Lais B Crepaldi, Lucas Goldschmidt Micas, Bernhard O Palsson, Adam M Feist | BMC Systems Biology | 2018-12-17 |
| Sea Spray Aerosol: Where Marine Biology Meets Atmospheric Chemistry. | Jamie M Schiffer, Liora E Mael, Kimberly A Prather, Rommie E Amaro, Vicki H Grassian | ACS Central Science | 2018-12-14 |
| Total Enzyme Syntheses of Napyradiomycins A1 and B1. | Shaun M K McKinnie, Zachary D Miles, Peter A Jordan, Takayoshi Awakawa, Henry P Pepper, Lauren A M Murray, Jonathan H George, Bradley S Moore | Journal Of The American Chemical Society | 2018-12-14 |
| Phototaxis in a wild isolate of the cyanobacterium . | Yiling Yang, Vinson Lam, Marie Adomako, Ryan Simkovsky, Annik Jakob, Nathan C Rockwell, Susan E Cohen, Arnaud Taton, Jingtong Wang, J Clark Lagarias, Annegret Wilde, David R Nobles, Jerry J Brand, Susan S Golden | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2018-12-14 |
| Genetic Network Analysis to Assess the Risk of Human Immunodeficiency Virus Transmission Among Men Who Have Sex With Men Seeking Partners on the Internet. | Thomas C S Martin, Antoine Chaillon, Susannah K Graves, Timothy Lin, Sara Gianella, Davey M Smith, Susan J Little, Martin Hoenigl | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2018-12-13 |
| Gut Microbial Divergence between Two Populations of the Hadal Amphipod Hirondellea gigas. | Weipeng Zhang, Hiromi Kayama Watanabe, Wei Ding, Yi Lan, Ren-Mao Tian, Jin Sun, Chong Chen, Lin Cai, Yongxin Li, Kazumasa Oguri, Takashi Toyofuku, Hiroshi Kitazato, Jeffrey C Drazen, Douglas Bartlett, Pei-Yuan Qian | Applied And Environmental Microbiology | 2018-12-13 |
| Effects of HIV on executive function and verbal fluency in Cameroon. | Georgette D Kanmogne, Julius Y Fonsah, Bin Tang, Roland F Doh, Anne M Kengne, Anya Umlauf, Claude T Tagny, Emilienne Nchindap, Léopoldine Kenmogne, Donald Franklin, Dora M Njamnshi, Dora Mbanya, Alfred K Njamnshi, Robert K Heaton | Scientific Reports | 2018-12-12 |
| Peripheral Blood Mitochondrial DNA Copy Number Obtained From Genome-Wide Genotype Data Is Associated With Neurocognitive Impairment in Persons With Chronic HIV Infection. | Todd Hulgan, Asha R Kallianpur, Yan Guo, Jill S Barnholtz-Sloan, Haley Gittleman, Todd T Brown, Ronald Ellis, Scott Letendre, Robert K Heaton, David C Samuels, | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2018-12-12 |
| Cognitive Impairment in Zambians With HIV Infection and Pulmonary Tuberculosis. | Knut A Hestad, Jonathan Chinyama, Menon J Anitha, Mary S Ngoma, J Allen McCutchan, Donald R Franklin, Robert K Heaton | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2018-12-12 |
| Vaccine-Induced Protection from Homologous Tier 2 SHIV Challenge in Nonhuman Primates Depends on Serum-Neutralizing Antibody Titers. | Matthias G Pauthner, Joseph P Nkolola, Colin Havenar-Daughton, Ben Murrell, Samantha M Reiss, Raiza Bastidas, Jérémie Prévost, Rebecca Nedellec, Benjamin von Bredow, Peter Abbink, Christopher A Cottrell, Daniel W Kulp, Talar Tokatlian, Bartek Nogal, Matteo Bianchi, Hui Li, Jeong Hyun Lee, Salvatore T Butera, David T Evans, Lars Hangartner, Andrés Finzi, Ian A Wilson, Richard T Wyatt, Darrell J Irvine, William R Schief, Andrew B Ward, Rogier W Sanders, Shane Crotty, George M Shaw, Dan H Barouch, Dennis R Burton | Immunity | 2018-12-11 |
| The role of the skin microbiome in atopic dermatitis. | Teruaki Nakatsuji, Richard L Gallo | Annals Of Allergy, Asthma & Immunology : Official Publication Of The American College Of Allergy, Asthma, & Immunology | 2018-12-11 |
| Modeling genome-wide enzyme evolution predicts strong epistasis underlying catalytic turnover rates. | David Heckmann, Daniel C Zielinski, Bernhard O Palsson | Nature Communications | 2018-12-10 |
| GABA-modulating bacteria of the human gut microbiota. | Philip Strandwitz, Ki Hyun Kim, Darya Terekhova, Joanne K Liu, Anukriti Sharma, Jennifer Levering, Daniel McDonald, David Dietrich, Timothy R Ramadhar, Asama Lekbua, Nader Mroue, Conor Liston, Eric J Stewart, Marc J Dubin, Karsten Zengler, Rob Knight, Jack A Gilbert, Jon Clardy, Kim Lewis | Nature Microbiology | 2018-12-10 |
| Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models. | David Heckmann, Colton J Lloyd, Nathan Mih, Yuanchi Ha, Daniel C Zielinski, Zachary B Haiman, Abdelmoneim Amer Desouki, Martin J Lercher, Bernhard O Palsson | Nature Communications | 2018-12-07 |
| Impact of Anesthetics on Human Neutrophil Function. | Angela Meier, Victor Nizet | Anesthesia And Analgesia | 2018-12-07 |
| Group A Streptococcal S Protein Utilizes Red Blood Cells as Immune Camouflage and Is a Critical Determinant for Immune Evasion. | Igor H Wierzbicki, Anaamika Campeau, Diana Dehaini, Maya Holay, Xiaoli Wei, Trever Greene, Man Ying, Jenna S Sands, Anne Lamsa, Elina Zuniga, Kit Pogliano, Ronnie H Fang, Christopher N LaRock, Liangfang Zhang, David J Gonzalez | Cell Reports | 2018-12-05 |
| Urobiome updates: advances in urinary microbiome research. | Alan J Wolfe, Linda Brubaker | Nature Reviews. Urology | 2018-12-05 |
| A Hard Day's Night: Cyanobacteria in Diel Cycles. | David G Welkie, Benjamin E Rubin, Spencer Diamond, Rachel D Hood, David F Savage, Susan S Golden | Trends In Microbiology | 2018-12-05 |
| Ketoreductase Domain Dysfunction Expands Chemodiversity: Malyngamide Biosynthesis in the Cyanobacterium Okeania hirsuta. | Nathan A Moss, Tiago Leão, Michael R Rankin, Tyler M McCullough, Pingping Qu, Anton Korobeynikov, Janet L Smith, Lena Gerwick, William H Gerwick | ACS Chemical Biology | 2018-12-03 |
| Erratum to: The sponge microbiome project. | Lucas Moitinho-Silva, Shaun Nielsen, Amnon Amir, Antonio Gonzalez, Gail L Ackermann, Carlo Cerrano, Carmen Astudillo-Garcia, Cole Easson, Detmer Sipkema, Fang Liu, Georg Steinert, Giorgos Kotoulas, Grace P McCormack, Guofang Feng, James J Bell, Jan Vicente, Johannes R Björk, Jose M Montoya, Julie B Olson, Julie Reveillaud, Laura Steindler, Mari-Carmen Pineda, Maria V Marra, Micha Ilan, Michael W Taylor, Paraskevi Polymenakou, Patrick M Erwin, Peter J Schupp, Rachel L Simister, Rob Knight, Robert W Thacker, Rodrigo Costa, Russell T Hill, Susanna Lopez-Legentil, Thanos Dailianis, Timothy Ravasi, Ute Hentschel, Zhiyong Li, Nicole S Webster, Torsten Thomas | GigaScience | 2018-12-01 |
| Sex, Microbes, and Polycystic Ovary Syndrome. | Varykina G Thackray | Trends In Endocrinology And Metabolism: TEM | 2018-11-29 |
| Baseline Genotype Testing to Assess Drug Resistance Before Beginning HIV Treatment-Reply. | Michael S Saag, Huldrych F Günthard, Davey M Smith | JAMA | 2018-11-28 |
| Neolymphostin A Is a Covalent Phosphoinositide 3-Kinase (PI3K)/Mammalian Target of Rapamycin (mTOR) Dual Inhibitor That Employs an Unusual Electrophilic Vinylogous Ester. | Gabriel Castro-Falcón, Grant S Seiler, Özlem Demir, Manoj K Rathinaswamy, David Hamelin, Reece M Hoffmann, Stefanie L Makowski, Anne-Catrin Letzel, Seth J Field, John E Burke, Rommie E Amaro, Chambers C Hughes | Journal Of Medicinal Chemistry | 2018-11-28 |
| Human milk oligosaccharides, milk microbiome and infant gut microbiome modulate neonatal rotavirus infection. | Sasirekha Ramani, Christopher J Stewart, Daniel R Laucirica, Nadim J Ajami, Bianca Robertson, Chloe A Autran, Dhairyasheel Shinge, Sandya Rani, Sasirekha Anandan, Liya Hu, Josephine C Ferreon, Kurien A Kuruvilla, Joseph F Petrosino, B V Venkataram Prasad, Lars Bode, Gagandeep Kang, Mary K Estes | Nature Communications | 2018-11-27 |
| Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations. | Raphael Eisenhofer, Jeremiah J Minich, Clarisse Marotz, Alan Cooper, Rob Knight, Laura S Weyrich | Trends In Microbiology | 2018-11-26 |
| Next steps in studying the human microbiome and health in prospective studies, Bethesda, MD, May 16-17, 2017. | Rashmi Sinha, Habibul Ahsan, Martin Blaser, J Gregory Caporaso, Joseph Russell Carmical, Andrew T Chan, Anthony Fodor, Mitchell H Gail, Curtis C Harris, Kathy Helzlsouer, Curtis Huttenhower, Rob Knight, Heidi H Kong, Gabriel Y Lai, Diane Leigh Smith Hutchinson, Loic Le Marchand, Hongzhe Li, Michael J Orlich, Jianxin Shi, Ann Truelove, Mukesh Verma, Emily Vogtmann, Owen White, Walter Willett, Wei Zheng, Somdat Mahabir, Christian Abnet | Microbiome | 2018-11-26 |
| The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus. | Alison Vrbanac, Angelica M Riestra, Alison Coady, Rob Knight, Victor Nizet, Kathryn A Patras | BMC Microbiology | 2018-11-26 |
| Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines. | Clotilde Théry, Kenneth W Witwer, Elena Aikawa, Maria Jose Alcaraz, Johnathon D Anderson, Ramaroson Andriantsitohaina, Anna Antoniou, Tanina Arab, Fabienne Archer, Georgia K Atkin-Smith, D Craig Ayre, Jean-Marie Bach, Daniel Bachurski, Hossein Baharvand, Leonora Balaj, Shawn Baldacchino, Natalie N Bauer, Amy A Baxter, Mary Bebawy, Carla Beckham, Apolonija Bedina Zavec, Abderrahim Benmoussa, Anna C Berardi, Paolo Bergese, Ewa Bielska, Cherie Blenkiron, Sylwia Bobis-Wozowicz, Eric Boilard, Wilfrid Boireau, Antonella Bongiovanni, Francesc E Borràs, Steffi Bosch, Chantal M Boulanger, Xandra Breakefield, Andrew M Breglio, Meadhbh Á Brennan, David R Brigstock, Alain Brisson, Marike Ld Broekman, Jacqueline F Bromberg, Paulina Bryl-Górecka, Shilpa Buch, Amy H Buck, Dylan Burger, Sara Busatto, Dominik 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| The microbiome in patients with atopic dermatitis. | Amy S Paller, Heidi H Kong, Patrick Seed, Shruti Naik, Tiffany C Scharschmidt, Richard L Gallo, Thomas Luger, Alan D Irvine | The Journal Of Allergy And Clinical Immunology | 2018-11-23 |
| Tamm-Horsfall Protein Protects the Urinary Tract against . | Alison Coady, Anissa R Ramos, Joshua Olson, Victor Nizet, Kathryn A Patras | Infection And Immunity | 2018-11-20 |
| Bacteria engineered to produce IL-22 in intestine induce expression of REG3G to reduce ethanol-induced liver disease in mice. | Tim Hendrikx, Yi Duan, Yanhan Wang, Jee-Hwan Oh, Laura M Alexander, Wendy Huang, Peter Stärkel, Samuel B Ho, Bei Gao, Oliver Fiehn, Patrick Emond, Harry Sokol, Jan-Peter van Pijkeren, Bernd Schnabl | Gut | 2018-11-17 |
| Rapid Inhibition Profiling Identifies a Keystone Target in the Nucleotide Biosynthesis Pathway. | Christine E Peters, Anne Lamsa, Roland B Liu, Diana Quach, Joseph Sugie, Lauren Brumage, Joe Pogliano, Javier Lopez-Garrido, Kit Pogliano | ACS Chemical Biology | 2018-11-15 |
| Revealing Key Determinants of Clonal Variation in Transgene Expression in Recombinant CHO Cells Using Targeted Genome Editing. | Jae Seong Lee, Jin Hyoung Park, Tae Kwang Ha, Mojtaba Samoudi, Nathan E Lewis, Bernhard O Palsson, Helene Faustrup Kildegaard, Gyun Min Lee | ACS Synthetic Biology | 2018-11-14 |
| Rock-paper-scissors: Engineered population dynamics increase genetic stability. | Michael J Liao, M Omar Din, Lev Tsimring, Jeff Hasty | Science (New York, N.Y.) | 2018-11-14 |
| Brief Report: Body Mass Index and Cognitive Function Among HIV-1-Infected Individuals in China, India, and Nigeria. | Jibreel Jumare, Samer S El-Kamary, Laurence Magder, Laura Hungerford, Anya Umlauf, Donald Franklin, Manisha Ghate, Alashʼle Abimiku, Man Charurat, Scott Letendre, Ronald J Ellis, Sanjay Mehendale, William A Blattner, Walter Royal, Thomas D Marcotte, Robert K Heaton, Igor Grant, John A McCutchan | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2018-11-14 |
| Evaluating the Information Content of Shallow Shotgun Metagenomics. | Benjamin Hillmann, Gabriel A Al-Ghalith, Robin R Shields-Cutler, Qiyun Zhu, Daryl M Gohl, Kenneth B Beckman, Rob Knight, Dan Knights | MSystems | 2018-11-13 |
| Identifying and Predicting Novelty in Microbiome Studies. | Xiaoquan Su, Gongchao Jing, Daniel McDonald, Honglei Wang, Zengbin Wang, Antonio Gonzalez, Zheng Sun, Shi Huang, Jose Navas, Rob Knight, Jian Xu | MBio | 2018-11-13 |
| Predicting the metabolic capabilities of Synechococcus elongatus PCC 7942 adapted to different light regimes. | Jared T Broddrick, David G Welkie, Denis Jallet, Susan S Golden, Graham Peers, Bernhard O Palsson | Metabolic Engineering | 2018-11-13 |
| A Computational Assay that Explores the Hemagglutinin/Neuraminidase Functional Balance Reveals the Neuraminidase Secondary Site as a Novel Anti-Influenza Target. | Rommie E Amaro, Pek U Ieong, Gary Huber, Abigail Dommer, Alasdair C Steven, Robin M Bush, Jacob D Durrant, Lane W Votapka | ACS Central Science | 2018-11-09 |
| Sugar-stimulated CO sequestration by the green microalga Chlorella vulgaris. | Weiqi Fu, Steinn Gudmundsson, Kristine Wichuk, Sirus Palsson, Bernhard O Palsson, Kourosh Salehi-Ashtiani, Sigurður Brynjólfsson | The Science Of The Total Environment | 2018-11-09 |
| Trace Evidence Potential in Postmortem Skin Microbiomes: From Death Scene to Morgue. | Whitney A Kodama, Zhenjiang Xu, Jessica L Metcalf, Se Jin Song, Nicholas Harrison, Rob Knight, David O Carter, Christopher B Happy | Journal Of Forensic Sciences | 2018-11-08 |
| Trait-like vulnerability of higher-order cognition and ability to maintain wakefulness during combined sleep restriction and circadian misalignment. | Kate E Sprecher, Hannah K Ritchie, Tina M Burke, Christopher M Depner, Alexandra N Smits, Pieter C Dorrestein, Monika Fleshner, Rob Knight, Christopher A Lowry, Fred W Turek, Martha H Vitaterna, Kenneth P Wright | Sleep | 2018-11-08 |
| TLR Activation Alters Bone Marrow-Derived Macrophage Differentiation. | Gertrude O Oppong-Nonterah, Omar Lakhdari, Asami Yamamura, Hal M Hoffman, Lawrence S Prince | Journal Of Innate Immunity | 2018-11-08 |
| High-Throughput Miniaturized 16S rRNA Amplicon Library Preparation Reduces Costs while Preserving Microbiome Integrity. | Jeremiah J Minich, Greg Humphrey, Rodolfo A S Benitez, Jon Sanders, Austin Swafford, Eric E Allen, Rob Knight | MSystems | 2018-11-06 |
| Multiple Sclerosis-Associated Changes in the Composition and Immune Functions of Spore-Forming Bacteria. | Egle Cekanaviciute, Anne-Katrin Pröbstel, Anna Thomann, Tessel F Runia, Patrizia Casaccia, Ilana Katz Sand, Elizabeth Crabtree, Sneha Singh, John Morrissey, Patrick Barba, Refujia Gomez, Rob Knight, Sarkis Mazmanian, Jennifer Graves, Bruce A C Cree, Scott S Zamvil, Sergio E Baranzini | MSystems | 2018-11-06 |
| A Rapid and Low-Cost Pathogen Detection Platform by Using a Molecular Agglutination Assay. | Tsung-Feng Wu, Yu-Chen Chen, Wei-Chung Wang, Yen-Chi Fang, Scott Fukuoka, David T Pride, On Shun Pak | ACS Central Science | 2018-11-05 |
| Antimicrobial proteins: intestinal guards to protect against liver disease. | Tim Hendrikx, Bernd Schnabl | Journal Of Gastroenterology | 2018-11-03 |
| Enhanced topical delivery of non-complexed molecular iodine for Methicillin-resistant Staphylococcus aureus decolonization. | Satoshi Uchiyama, Samira Dahesh, Victor Nizet, Jack Kessler | International Journal Of Pharmaceutics | 2018-11-02 |
| AACR White Paper: Shaping the Future of Cancer Prevention - A Roadmap for Advancing Science and Public Health. | Scott M Lippman, Cory Abate-Shen, Karen L Colbert Maresso, Graham A Colditz, Andrew J Dannenberg, Nancy E Davidson, Mary L Disis, Raymond N DuBois, Eva Szabo, Anna R Giuliano, William N Hait, J Jack Lee, Thomas W Kensler, Barnett S Kramer, Paul Limburg, Anirban Maitra, Maria Elena Martinez, Timothy R Rebbeck, Kathryn H Schmitz, Eduardo Vilar, Ernest T Hawk | Cancer Prevention Research (Philadelphia, Pa.) | 2018-11-02 |
| Ethylene signaling regulates natural variation in the abundance of antifungal acetylated diferuloylsucroses and Fusarium graminearum resistance in maize seedling roots. | Shaoqun Zhou, Ying K Zhang, Karl A Kremling, Yezhang Ding, John S Bennett, Justin S Bae, Dean K Kim, Hayley H Ackerman, Michael V Kolomiets, Eric A Schmelz, Frank C Schroeder, Edward S Buckler, Georg Jander | The New Phytologist | 2018-11-02 |
| Trichomonas vaginalis Induces NLRP3 Inflammasome Activation and Pyroptotic Cell Death in Human Macrophages. | Angelica Montenegro Riestra, J Andrés Valderrama, Kathryn A Patras, Sharon D Booth, Xing Yen Quek, Chih-Ming Tsai, Victor Nizet | Journal Of Innate Immunity | 2018-11-02 |
| Host-parasite interactions: an interview with Emily Troemel. | Emily Troemel | BMC Biology | 2018-11-01 |
| Striped UniFrac: enabling microbiome analysis at unprecedented scale. | Daniel McDonald, Yoshiki Vázquez-Baeza, David Koslicki, Jason McClelland, Nicolai Reeve, Zhenjiang Xu, Antonio Gonzalez, Rob Knight | Nature Methods | 2018-11-01 |
| Metagenomics-Based, Strain-Level Analysis of From a Time-Series of Microbiome Samples From a Crohn's Disease Patient. | Xin Fang, Jonathan M Monk, Sergey Nurk, Margarita Akseshina, Qiyun Zhu, Christopher Gemmell, Connor Gianetto-Hill, Nelly Leung, Richard Szubin, Jon Sanders, Paul L Beck, Weizhong Li, William J Sandborn, Scott D Gray-Owen, Rob Knight, Emma Allen-Vercoe, Bernhard O Palsson, Larry Smarr | Frontiers In Microbiology | 2018-10-30 |
| Species-level functional profiling of metagenomes and metatranscriptomes. | Eric A Franzosa, Lauren J McIver, Gholamali Rahnavard, Luke R Thompson, Melanie Schirmer, George Weingart, Karen Schwarzberg Lipson, Rob Knight, J Gregory Caporaso, Nicola Segata, Curtis Huttenhower | Nature Methods | 2018-10-30 |
| Microfluidics-Based Analysis of Contact-dependent Bacterial Interactions. | Robert Cooper, Lev Tsimring, Jeff Hasty | Bio-protocol | 2018-10-30 |
| Inflammation Relates to Poorer Complex Motor Performance Among Adults Living With HIV on Suppressive Antiretroviral Therapy. | Jessica L Montoya, Laura M Campbell, Emily W Paolillo, Ronald J Ellis, Scott L Letendre, Dilip V Jeste, David J Moore | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2018-10-27 |
| Optimization of carbon and energy utilization through differential translational efficiency. | Mahmoud M Al-Bassam, Ji-Nu Kim, Livia S Zaramela, Benjamin P Kellman, Cristal Zuniga, Jacob M Wozniak, David J Gonzalez, Karsten Zengler | Nature Communications | 2018-10-26 |
| Disease-modifying therapies alter gut microbial composition in MS. | Ilana Katz Sand, Yunjiao Zhu, Achilles Ntranos, Jose C Clemente, Egle Cekanaviciute, Rachel Brandstadter, Elizabeth Crabtree-Hartman, Sneha Singh, Yadira Bencosme, Justine Debelius, Rob Knight, Bruce A C Cree, Sergio E Baranzini, Patrizia Casaccia | Neurology(R) Neuroimmunology & Neuroinflammation | 2018-10-26 |
| Nitrosopyridine Probe To Detect Polyketide Natural Products with Conjugated Alkenes: Discovery of Novodaryamide and Nocarditriene. | Gabriel Castro-Falcón, Natalie Millán-Aguiñaga, Catherine Roullier, Paul R Jensen, Chambers C Hughes | ACS Chemical Biology | 2018-10-26 |
| Comparison of Multiplex Gastrointestinal Pathogen Panel and Conventional Stool Testing for Evaluation of Diarrhea in Patients with Inflammatory Bowel Diseases. | Waseem Ahmad, Nghia H Nguyen, Brigid S Boland, Parambir S Dulai, David T Pride, Daniel Bouland, William J Sandborn, Siddharth Singh | Digestive Diseases And Sciences | 2018-10-25 |
| Gut Microbiota in the First 2 Years of Life and the Association with Body Mass Index at Age 12 in a Norwegian Birth Cohort. | Maggie A Stanislawski, Dana Dabelea, Brandie D Wagner, Nina Iszatt, Cecilie Dahl, Marci K Sontag, Rob Knight, Catherine A Lozupone, Merete Eggesbø | MBio | 2018-10-23 |
| Exploring the separation power of mixed-modal resins for purification of recombinant osteopontin from clarified Escherichia coli lysates. | Shengchun Guo, Ayswarya Ravi, Stephen Mayfield, Zivko L Nikolov | Biotechnology Progress | 2018-10-23 |
| A comprehensive understanding of the gut mucosal immune system in allergic inflammation. | Daisuke Tokuhara, Yosuke Kurashima, Mariko Kamioka, Toshinori Nakayama, Peter Ernst, Hiroshi Kiyono | Allergology International : Official Journal Of The Japanese Society Of Allergology | 2018-10-23 |
| The Cytokine Profile in Acute Chikungunya Infection is Predictive of Chronic Arthritis 20 Months Post Infection. | Aileen Y Chang, Sarah Tritsch, St Patrick Reid, Karen Martins, Liliana Encinales, Nelly Pacheco, Richard L Amdur, Alexandra Porras-Ramirez, Alejandro Rico-Mendoza, Guangzhao Li, Jin Peng, Gary S Firestein, Gary L Simon, Jeff M Bethony | Diseases (Basel, Switzerland) | 2018-10-20 |
| Detection of Epidemic Scarlet Fever Group A Streptococcus in Australia. | Mark J Walker, Stephan Brouwer, Brian M Forde, Kate A Worthing, Liam McIntyre, Lana Sundac, Sam Maloney, Leah W Roberts, Timothy C Barnett, Johanna Richter, Amanda J Cork, Adam D Irwin, Yuanhai You, Jianzhong Zhang, Gordon Dougan, Kwok Y Yuen, Victor Nizet, Scott A Beatson, Keith Grimwood, Mark R Davies | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2018-10-19 |
| The chemical cue tetrabromopyrrole induces rapid cellular stress and mortality in phytoplankton. | Kristen E Whalen, Christopher Kirby, Russell M Nicholson, Mia O'Reilly, Bradley S Moore, Elizabeth L Harvey | Scientific Reports | 2018-10-19 |
| Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance. | Erol S Kavvas, Edward Catoiu, Nathan Mih, James T Yurkovich, Yara Seif, Nicholas Dillon, David Heckmann, Amitesh Anand, Laurence Yang, Victor Nizet, Jonathan M Monk, Bernhard O Palsson | Nature Communications | 2018-10-17 |
| Editorial overview: Current Opinion in Microbiology 2018 Special issue 'Microbial systems biology, vol. 45'. | Terry Hwa, Uwe Sauer | Current Opinion In Microbiology | 2018-10-17 |
| Enzyme promiscuity drives branched-chain fatty acid synthesis in adipose tissues. | Martina Wallace, Courtney R Green, Lindsay S Roberts, Yujung Michelle Lee, Justin L McCarville, Joan Sanchez-Gurmaches, Noah Meurs, Jivani M Gengatharan, Justin D Hover, Susan A Phillips, Theodore P Ciaraldi, David A Guertin, Pedro Cabrales, Janelle S Ayres, Daniel K Nomura, Rohit Loomba, Christian M Metallo | Nature Chemical Biology | 2018-10-16 |
| Streptococcal Lancefield polysaccharides are critical cell wall determinants for human Group IIA secreted phospholipase A2 to exert its bactericidal effects. | Vincent P van Hensbergen, Elin Movert, Vincent de Maat, Christian Lüchtenborg, Yoann Le Breton, Gérard Lambeau, Christine Payré, Anna Henningham, Victor Nizet, Jos A G van Strijp, Britta Brügger, Fredric Carlsson, Kevin S McIver, Nina M van Sorge | PLoS Pathogens | 2018-10-15 |
| Structural Elucidation of Trace Components Combining GC/MS, GC/IR, DFT-Calculation and Synthesis-Salinilactones, Unprecedented Bicyclic Lactones from Salinispora Bacteria. | Christian Schlawis, Simone Kern, Yuta Kudo, Jörg Grunenberg, Bradley S Moore, Stefan Schulz | Angewandte Chemie (International Ed. In English) | 2018-10-15 |
| Differential Activation of Hepatic Invariant NKT Cell Subsets Plays a Key Role in Progression of Nonalcoholic Steatohepatitis. | Igor Maricic, Idania Marrero, Akiko Eguchi, Ryota Nakamura, Casey D Johnson, Suryasarathi Dasgupta, Carolyn D Hernandez, Phirum Sam Nguyen, Austin D Swafford, Rob Knight, Ariel E Feldstein, Rohit Loomba, Vipin Kumar | Journal Of Immunology (Baltimore, Md. : 1950) | 2018-10-15 |
| Avibactam Sensitizes Carbapenem-Resistant NDM-1-Producing Klebsiella pneumoniae to Innate Immune Clearance. | Erlinda R Ulloa, Nicholas Dillon, Hannah Tsunemoto, Joe Pogliano, George Sakoulas, Victor Nizet | The Journal Of Infectious Diseases | 2018-10-11 |
| Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow. | Elizabeth Brunk, Roger L Chang, Jing Xia, Hooman Hefzi, James T Yurkovich, Donghyuk Kim, Evan Buckmiller, Harris H Wang, Byung-Kwan Cho, Chen Yang, Bernhard O Palsson, George M Church, Nathan E Lewis | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2018-10-09 |
| Reply to: "Finding fibroblast growth factor 19 during cholestasis: Does x mark the spot? | Katharina Brandl, Phillipp Hartmann, Lily J Jih, Donald P Pizzo, Bernd Schnabl | Journal Of Hepatology | 2018-10-06 |
| Preserving microbial diversity. | Maria G Dominguez Bello, Rob Knight, Jack A Gilbert, Martin J Blaser | Science (New York, N.Y.) | 2018-10-06 |
| Pangenomic comparison of globally distributed Poribacteria associated with sponge hosts and marine particles. | Sheila Podell, Jessica M Blanton, Alexander Neu, Vinayak Agarwal, Jason S Biggs, Bradley S Moore, Eric E Allen | The ISME Journal | 2018-10-05 |
| White matter damage, neuroinflammation, and neuronal integrity in HAND. | Aljoharah Alakkas, Ronald J Ellis, Caitlin Wei-Ming Watson, Anya Umlauf, Robert K Heaton, Scott Letendre, Ann Collier, Christina Marra, David B Clifford, Benjamin Gelman, Ned Sacktor, Susan Morgello, David Simpson, J Allen McCutchan, Asha Kallianpur, Sara Gianella, Thomas Marcotte, Igor Grant, Christine Fennema-Notestine, | Journal Of Neurovirology | 2018-10-05 |
| Integrative genomic analysis of mouse and human hepatocellular carcinoma. | Michelle Dow, Rachel M Pyke, Brian Y Tsui, Ludmil B Alexandrov, Hayato Nakagawa, Koji Taniguchi, Ekihiro Seki, Olivier Harismendy, Shabnam Shalapour, Michael Karin, Hannah Carter, Joan Font-Burgada | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2018-10-04 |
| Infants Are Exposed to Human Milk Oligosaccharides Already . | Audra Wise, Bianca Robertson, Biswa Choudhury, Samuli Rautava, Erika Isolauri, Seppo Salminen, Lars Bode | Frontiers In Pediatrics | 2018-10-02 |
| Host-microbiome interactions and recent progress into understanding the biology of acne vulgaris. | Alan M O'Neill, Richard L Gallo | Microbiome | 2018-10-02 |
| Dereplication of microbial metabolites through database search of mass spectra. | Hosein Mohimani, Alexey Gurevich, Alexander Shlemov, Alla Mikheenko, Anton Korobeynikov, Liu Cao, Egor Shcherbin, Louis-Felix Nothias, Pieter C Dorrestein, Pavel A Pevzner | Nature Communications | 2018-10-02 |
| Qiita: rapid, web-enabled microbiome meta-analysis. | Antonio Gonzalez, Jose A Navas-Molina, Tomasz Kosciolek, Daniel McDonald, Yoshiki Vázquez-Baeza, Gail Ackermann, Jeff DeReus, Stefan Janssen, Austin D Swafford, Stephanie B Orchanian, Jon G Sanders, Joshua Shorenstein, Hannes Holste, Semar Petrus, Adam Robbins-Pianka, Colin J Brislawn, Mingxun Wang, Jai Ram Rideout, Evan Bolyen, Matthew Dillon, J Gregory Caporaso, Pieter C Dorrestein, Rob Knight | Nature Methods | 2018-10-01 |
| Microbiome as a therapeutic target in alcohol-related liver disease. | Shiv K Sarin, Apurva Pande, Bernd Schnabl | Journal Of Hepatology | 2018-09-30 |
| Urinary microbes and postoperative urinary tract infection risk in urogynecologic surgical patients. | Krystal J Thomas-White, Xiang Gao, Huaiying Lin, Cynthia S Fok, Kathryn Ghanayem, Elizabeth R Mueller, Qunfeng Dong, Linda Brubaker, Alan J Wolfe | International Urogynecology Journal | 2018-09-28 |
| Comparison of Oral Collection Methods for Studies of Microbiota. | Emily Vogtmann, Jun Chen, Muhammad G Kibriya, Amnon Amir, Jianxin Shi, Yu Chen, Tariqul Islam, Mahbubul Eunes, Alauddin Ahmed, Jabun Naher, Anisur Rahman, Bhaswati Barmon, Rob Knight, Nicholas Chia, Habibul Ahsan, Christian C Abnet, Rashmi Sinha | Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology | 2018-09-27 |
| Author Correction: Regional variation limits applications of healthy gut microbiome reference ranges and disease models. | Yan He, Wei Wu, Hui-Min Zheng, Pan Li, Daniel McDonald, Hua-Fang Sheng, Mu-Xuan Chen, Zi-Hui Chen, Gui-Yuan Ji, Zhong-Dai-Xi Zheng, Prabhakar Mujagond, Xiao-Jiao Chen, Zu-Hua Rong, Peng Chen, Li-Yi Lyu, Xian Wang, Chong-Bin Wu, Nan Yu, Yan-Jun Xu, Jia Yin, Jeroen Raes, Rob Knight, Wen-Jun Ma, Hong-Wei Zhou | Nature Medicine | 2018-09-27 |
| ProteoStorm: An Ultrafast Metaproteomics Database Search Framework. | Doruk Beyter, Miin S Lin, Yanbao Yu, Rembert Pieper, Vineet Bafna | Cell Systems | 2018-09-26 |
| Differences in gut microbiome composition between persons with chronic schizophrenia and healthy comparison subjects. | Tanya T Nguyen, Tomasz Kosciolek, Yadira Maldonado, Rebecca E Daly, Averria Sirkin Martin, Daniel McDonald, Rob Knight, Dilip V Jeste | Schizophrenia Research | 2018-09-26 |
| Niche partitioning of a pathogenic microbiome driven by chemical gradients. | Robert A Quinn, William Comstock, Tianyu Zhang, James T Morton, Ricardo da Silva, Alda Tran, Alexander Aksenov, Louis-Felix Nothias, Daniel Wangpraseurt, Alexey V Melnik, Gail Ackermann, Douglas Conrad, Isaac Klapper, Rob Knight, Pieter C Dorrestein | Science Advances | 2018-09-26 |
| Siglec-7 engagement by GBS β-protein suppresses pyroptotic cell death of natural killer cells. | Jerry J Fong, Chih-Ming Tsai, Sudeshna Saha, Victor Nizet, Ajit Varki, Jack D Bui | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2018-09-25 |
| Enzymatic glucose/oxygen biofuel cells: Use of oxygen-rich cathodes for operation under severe oxygen-deficit conditions. | Itthipon Jeerapan, Juliane R Sempionatto, Jung-Min You, Joseph Wang | Biosensors & Bioelectronics | 2018-09-19 |
| Evolution of gene knockout strains of E. coli reveal regulatory architectures governed by metabolism. | Douglas McCloskey, Sibei Xu, Troy E Sandberg, Elizabeth Brunk, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O Palsson | Nature Communications | 2018-09-18 |
| Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians. | Celeste Allaband, Daniel McDonald, Yoshiki Vázquez-Baeza, Jeremiah J Minich, Anupriya Tripathi, David A Brenner, Rohit Loomba, Larry Smarr, William J Sandborn, Bernd Schnabl, Pieter Dorrestein, Amir Zarrinpar, Rob Knight | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2018-09-18 |
| Multiple Optimal Phenotypes Overcome Redox and Glycolytic Intermediate Metabolite Imbalances in Escherichia coli pgi Knockout Evolutions. | Douglas McCloskey, Sibei Xu, Troy E Sandberg, Elizabeth Brunk, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O Palsson | Applied And Environmental Microbiology | 2018-09-17 |
| Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits. | Yara Seif, Erol Kavvas, Jean-Christophe Lachance, James T Yurkovich, Sean-Paul Nuccio, Xin Fang, Edward Catoiu, Manuela Raffatellu, Bernhard O Palsson, Jonathan M Monk | Nature Communications | 2018-09-14 |
| Changes in the genetic requirements for microbial interactions with increasing community complexity. | Manon Morin, Emily C Pierce, Rachel J Dutton | ELife | 2018-09-13 |
| Elevated A20 promotes TNF-induced and RIPK1-dependent intestinal epithelial cell death. | Ricard Garcia-Carbonell, Jerry Wong, Ju Youn Kim, Lisa Abernathy Close, Brigid S Boland, Thomas L Wong, Philip A Harris, Samuel B Ho, Soumita Das, Peter B Ernst, Roman Sasik, William J Sandborn, John Bertin, Pete J Gough, John T Chang, Michelle Kelliher, David Boone, Monica Guma, Michael Karin | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2018-09-12 |
| Gain-of-function experiments with bacteriophage lambda uncover residues under diversifying selection in nature. | Rohan Maddamsetti, Daniel T Johnson, Stephanie J Spielman, Katherine L Petrie, Debora S Marks, Justin R Meyer | Evolution; International Journal Of Organic Evolution | 2018-09-11 |
| Complex Network of NKT Cell Subsets Controls Immune Homeostasis in Liver and Gut. | Idania Marrero, Igor Maricic, Ariel E Feldstein, Rohit Loomba, Bernd Schnabl, Jesus Rivera-Nieves, Lars Eckmann, Vipin Kumar | Frontiers In Immunology | 2018-09-11 |
| Determinants of Oligonucleotide Selectivity of APOBEC3B. | Jeffrey R Wagner, Özlem Demir, Michael A Carpenter, Hideki Aihara, Daniel A Harki, Reuben S Harris, Rommie E Amaro | Journal Of Chemical Information And Modeling | 2018-09-10 |
| Transient and asymptomatic meningitis in human immunodeficiency virus-1 subtype C: a case study of genetic compartmentalization and biomarker dynamics. | Sergio M de Almeida, Michelli F Oliveira, Antoine Chaillon, Indianara Rotta, Clea E Ribeiro, Ana Paula de Pereira, Davey Smith, Scott Letendre, Ronald J Ellis | Journal Of Neurovirology | 2018-09-07 |
| Emerging Role of the Gut Microbiome in Nonalcoholic Fatty Liver Disease: From Composition to Function. | Suzanne R Sharpton, Veeral Ajmera, Rohit Loomba | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2018-09-07 |
| Discovery of Half-life of Circulating Hepatitis B Surface Antigen in Patients With Chronic Hepatitis B Infection Using Heavy Water Labeling. | Rohit Loomba, Martin Decaris, Kelvin W Li, Mahalakshmi Shankaran, Hussein Mohammed, Marcy Matthews, Lisa M Richards, Phirum Nguyen, Emily Rizo, Barbara Andrews, Robin Soto, Thomas Angel, Vithika Suri, Kathryn M Kitrinos, Dwight Barnes, Gregg Czerwieniec, Kathy Brendza, G Mani Subramanian, Anuj Gaggar, Marc K Hellerstein | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2018-09-06 |
| Advances in metabolic modeling of oleaginous microalgae. | Juan D Tibocha-Bonilla, Cristal Zuñiga, Rubén D Godoy-Silva, Karsten Zengler | Biotechnology For Biofuels | 2018-09-05 |
| The nonlesional skin surface distinguishes atopic dermatitis with food allergy as a unique endotype. | Donald Y M Leung, Agustin Calatroni, Livia S Zaramela, Petra K LeBeau, Nathan Dyjack, Kanwaljit Brar, Gloria David, Keli Johnson, Susan Leung, Marco Ramirez-Gama, Bo Liang, Cydney Rios, Michael T Montgomery, Brittany N Richers, Clifton F Hall, Kathryn A Norquest, John Jung, Irina Bronova, Simion Kreimer, C Conover Talbot, Debra Crumrine, Robert N Cole, Peter Elias, Karsten Zengler, Max A Seibold, Evgeny Berdyshev, Elena Goleva | Science Translational Medicine | 2018-08-31 |
| Microbial effects of livestock manure fertilization on freshwater aquaculture ponds rearing tilapia (Oreochromis shiranus) and North African catfish (Clarias gariepinus). | Jeremiah J Minich, Qiyun Zhu, Zhenjiang Zech Xu, Amnon Amir, Maxon Ngochera, Moses Simwaka, Eric E Allen, Hastings Zidana, Rob Knight | MicrobiologyOpen | 2018-08-31 |
| Gut microbiome, microbial metabolites and the development of NAFLD. | Cyrielle Caussy, Rohit Loomba | Nature Reviews. Gastroenterology & Hepatology | 2018-08-31 |
| Small metabolites, possible big changes: a microbiota-centered view of non-alcoholic fatty liver disease. | Huikuan Chu, Yi Duan, Ling Yang, Bernd Schnabl | Gut | 2018-08-31 |
| Pharmacokinetics and Safety of Single Intravenous Doses of Ceftolozane/Tazobactam in Children With Proven or Suspected Gram-Negative Infection. | John S Bradley, Jocelyn Y Ang, Antonio C Arrieta, Kajal B Larson, Matthew L Rizk, Luzelena Caro, Shan Yang, Brian Yu, Matthew G Johnson, Elizabeth G Rhee | The Pediatric Infectious Disease Journal | 2018-08-29 |
| Pumilacidins from the Octocoral-Associated sp. DT001 Display Anti-Proliferative Effects in . | Daniel Torres-Mendoza, Lorena M Coronado, Laura M Pineda, Héctor M Guzmán, Pieter C Dorrestein, Carmenza Spadafora, Marcelino Gutiérrez | Molecules (Basel, Switzerland) | 2018-08-29 |
| Reply. | Aileen Y Chang, Jeffrey M Bethony, Gary L Simon, Liliana Encinales, Gary S Firestein | Arthritis & Rheumatology (Hoboken, N.J.) | 2018-08-27 |
| TCF1 and LEF1 Control Treg Competitive Survival and Tfr Development to Prevent Autoimmune Diseases. | Bi-Huei Yang, Ke Wang, Shuo Wan, Yan Liang, Xiaomei Yuan, Yi Dong, Sunglim Cho, Wanqing Xu, Kristen Jepsen, Gen-Sheng Feng, Li-Fan Lu, Hai-Hui Xue, Wenxian Fu | Cell Reports | 2018-08-27 |
| Regional variation limits applications of healthy gut microbiome reference ranges and disease models. | Yan He, Wei Wu, Hui-Min Zheng, Pan Li, Daniel McDonald, Hua-Fang Sheng, Mu-Xuan Chen, Zi-Hui Chen, Gui-Yuan Ji, Zhong-Dai-Xi Zheng, Prabhakar Mujagond, Xiao-Jiao Chen, Zu-Hua Rong, Peng Chen, Li-Yi Lyu, Xian Wang, Chong-Bin Wu, Nan Yu, Yan-Jun Xu, Jia Yin, Jeroen Raes, Rob Knight, Wen-Jun Ma, Hong-Wei Zhou | Nature Medicine | 2018-08-27 |
| A Commensal Dipeptidyl Aminopeptidase with Specificity for N-Terminal Glycine Degrades Human-Produced Antimicrobial Peptides in Vitro. | Janice H Xu, Zhenze Jiang, Angelo Solania, Sandip Chatterjee, Brian Suzuki, Christopher B Lietz, Vivian Y H Hook, Anthony J O'Donoghue, Dennis W Wolan | ACS Chemical Biology | 2018-08-23 |
| Bistable emergence of oscillations in growing biofilms. | Rosa Martinez-Corral, Jintao Liu, Gürol M Süel, Jordi Garcia-Ojalvo | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2018-08-20 |
| Integration of Genomic Data with NMR Analysis Enables Assignment of the Full Stereostructure of Neaumycin B, a Potent Inhibitor of Glioblastoma from a Marine-Derived Micromonospora. | Min Cheol Kim, Henrique Machado, Kyoung Hwa Jang, Lynnie Trzoss, Paul R Jensen, William Fenical | Journal Of The American Chemical Society | 2018-08-20 |
| Links between environment, diet, and the hunter-gatherer microbiome. | Gabriela K Fragiadakis, Samuel A Smits, Erica D Sonnenburg, William Van Treuren, Gregor Reid, Rob Knight, Alphaxard Manjurano, John Changalucha, Maria Gloria Dominguez-Bello, Jeff Leach, Justin L Sonnenburg | Gut Microbes | 2018-08-17 |
| Urinary symptoms are associated with certain urinary microbes in urogynecologic surgical patients. | Cynthia S Fok, Xiang Gao, Huaiying Lin, Krystal J Thomas-White, Elizabeth R Mueller, Alan J Wolfe, Qunfeng Dong, Linda Brubaker | International Urogynecology Journal | 2018-08-16 |
| Leaky resistance and the conditions for the existence of lytic bacteriophage. | Waqas N Chaudhry, Maroš Pleška, Nilang N Shah, Howard Weiss, Ingrid C McCall, Justin R Meyer, Animesh Gupta, Călin C Guet, Bruce R Levin | PLoS Biology | 2018-08-16 |
| A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0. | Alberto Santos-Zavaleta, Mishael Sánchez-Pérez, Heladia Salgado, David A Velázquez-Ramírez, Socorro Gama-Castro, Víctor H Tierrafría, Stephen J W Busby, Patricia Aquino, Xin Fang, Bernhard O Palsson, James E Galagan, Julio Collado-Vides | BMC Biology | 2018-08-16 |
| Distinctive Archaeal Composition of an Artisanal Crystallizer Pond and Functional Insights Into Salt-Saturated Hypersaline Environment Adaptation. | Alvaro M Plominsky, Carlos Henríquez-Castillo, Nathalie Delherbe, Sheila Podell, Salvador Ramirez-Flandes, Juan A Ugalde, Juan F Santibañez, Ger van den Engh, Kurt Hanselmann, Osvaldo Ulloa, Rodrigo De la Iglesia, Eric E Allen, Nicole Trefault | Frontiers In Microbiology | 2018-08-14 |
| True Versus False Bacteremia in Infants and Children Less Than 3 Years of Age. | Elizabeth Mannino Avila, Erin Stucky Fisher, Kyung Rhee | Pediatric Emergency Care | 2018-08-13 |
| Engineering Salinispora tropica for heterologous expression of natural product biosynthetic gene clusters. | Jia Jia Zhang, Bradley S Moore, Xiaoyu Tang | Applied Microbiology And Biotechnology | 2018-08-13 |
| Percentage of ingested sodium excreted in 24-hour urine collections: A systematic review and meta-analysis. | Aaron M Lucko, Chelsea Doktorchik, Mark Woodward, Mary Cogswell, Bruce Neal, Doreen Rabi, Cheryl Anderson, Feng J He, Graham A MacGregor, Mary L'Abbe, JoAnne Arcand, Paul K Whelton, Rachael McLean, Norm R C Campbell, | Journal Of Clinical Hypertension (Greenwich, Conn.) | 2018-08-12 |
| Influenza Vaccination Can Broadly Activate the HIV Reservoir During Antiretroviral Therapy. | Aaron Christensen-Quick, Antoine Chaillon, Christina Yek, Fabio Zanini, Parris Jordan, Caroline Ignacio, Gemma Caballero, Sara Gianella, Davey Smith | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2018-08-08 |
| Learning from bacterial competition in the host to develop antimicrobials. | Manuela Raffatellu | Nature Medicine | 2018-08-06 |
| Cell-Like Micromotors. | Berta Esteban-Fernández de Ávila, Weiwei Gao, Emil Karshalev, Liangfang Zhang, Joseph Wang | Accounts Of Chemical Research | 2018-08-03 |
| Twisted Tales: Insights into Genome Diversity of Ciliates Using Single-Cell 'Omics. | Xyrus X Maurer-Alcalá, Ying Yan, Olivia A Pilling, Rob Knight, Laura A Katz | Genome Biology And Evolution | 2018-08-01 |
| Roles for ClpXP in regulating the circadian clock in . | Susan E Cohen, Briana M McKnight, Susan S Golden | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2018-07-30 |
| Are microbiome studies ready for hypothesis-driven research? | Anupriya Tripathi, Clarisse Marotz, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Se Jin Song, Amina Bouslimani, Daniel McDonald, Qiyun Zhu, Jon G Sanders, Larry Smarr, Pieter C Dorrestein, Rob Knight | Current Opinion In Microbiology | 2018-07-27 |
| Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2018 Recommendations of the International Antiviral Society-USA Panel. | Michael S Saag, Constance A Benson, Rajesh T Gandhi, Jennifer F Hoy, Raphael J Landovitz, Michael J Mugavero, Paul E Sax, Davey M Smith, Melanie A Thompson, Susan P Buchbinder, Carlos Del Rio, Joseph J Eron, Gerd Fätkenheuer, Huldrych F Günthard, Jean-Michel Molina, Donna M Jacobsen, Paul A Volberding | JAMA | 2018-07-26 |
| Signal Percolation within a Bacterial Community. | Joseph W Larkin, Xiaoling Zhai, Kaito Kikuchi, Samuel E Redford, Arthur Prindle, Jintao Liu, Sacha Greenfield, Aleksandra M Walczak, Jordi Garcia-Ojalvo, Andrew Mugler, Gürol M Süel | Cell Systems | 2018-07-25 |
| Joint Analysis of Long and Short Reads Enables Accurate Estimates of Microbiome Complexity. | Anton Bankevich, Pavel A Pevzner | Cell Systems | 2018-07-25 |
| New mitochondrial DNA synthesis enables NLRP3 inflammasome activation. | Zhenyu Zhong, Shuang Liang, Elsa Sanchez-Lopez, Feng He, Shabnam Shalapour, Xue-Jia Lin, Jerry Wong, Siyuan Ding, Ekihiro Seki, Bernd Schnabl, Andrea L Hevener, Harry B Greenberg, Tatiana Kisseleva, Michael Karin | Nature | 2018-07-25 |
| The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight. | Francine E Garrett-Bakelman, Manjula Darshi, Stefan J Green, Ruben C Gur, Ling Lin, Brandon R Macias, Miles J McKenna, Cem Meydan, Tejaswini Mishra, Jad Nasrini, Brian D Piening, Lindsay F Rizzardi, Kumar Sharma, Jamila H Siamwala, Lynn Taylor, Martha Hotz Vitaterna, Maryam Afkarian, Ebrahim Afshinnekoo, Sara Ahadi, Aditya Ambati, Maneesh Arya, Daniela Bezdan, Colin M Callahan, Songjie Chen, Augustine M K Choi, George E Chlipala, Kévin Contrepois, Marisa Covington, Brian E Crucian, Immaculata De Vivo, David F Dinges, Douglas J Ebert, Jason I Feinberg, Jorge A Gandara, Kerry A George, John Goutsias, George S Grills, Alan R Hargens, Martina Heer, Ryan P Hillary, Andrew N Hoofnagle, Vivian Y H Hook, Garrett Jenkinson, Peng Jiang, Ali Keshavarzian, Steven S Laurie, Brittany Lee-McMullen, Sarah B Lumpkins, Matthew MacKay, Mark G Maienschein-Cline, Ari M Melnick, Tyler M Moore, Kiichi Nakahira, Hemal H Patel, Robert Pietrzyk, Varsha Rao, Rintaro Saito, Denis N Salins, Jan M Schilling, Dorothy D Sears, Caroline K Sheridan, Michael B Stenger, Rakel Tryggvadottir, Alexander E Urban, Tomas Vaisar, Benjamin Van Espen, Jing Zhang, Michael G Ziegler, Sara R Zwart, John B Charles, Craig E Kundrot, Graham B I Scott, Susan M Bailey, Mathias Basner, Andrew P Feinberg, Stuart M C Lee, Christopher E Mason, Emmanuel Mignot, Brinda K Rana, Scott M Smith, Michael P Snyder, Fred W Turek | Science (New York, N.Y.) | 2018-07-24 |
| Willingness to participate in HIV research at the end of life (EOL). | Katya Prakash, Sara Gianella, Karine Dubé, Jeff Taylor, GaYoung Lee, Davey M Smith | PloS One | 2018-07-23 |
| A Novel Sialylation Site on Neisseria gonorrhoeae Lipooligosaccharide Links Heptose II Lactose Expression with Pathogenicity. | Sanjay Ram, Sunita Gulati, Lisa A Lewis, Srinjoy Chakraborti, Bo Zheng, Rosane B DeOliveira, George W Reed, Andrew D Cox, Jianjun Li, Frank St Michael, Jacek Stupak, Xiao-Hong Su, Sudeshna Saha, Corinna S Landig, Ajit Varki, Peter A Rice | Infection And Immunity | 2018-07-23 |
| Skin commensal bacteria Staphylococcus epidermidis promote survival of melanocytes bearing UVB-induced DNA damage, while bacteria Propionibacterium acnes inhibit survival of melanocytes by increasing apoptosis. | Zhenping Wang, Jae-Eun Choi, Chia-Chi Wu, Anna Di Nardo | Photodermatology, Photoimmunology & Photomedicine | 2018-07-23 |
| Development of a cyanobacterial heterologous polyketide production platform. | Julia Roulet, Arnaud Taton, James W Golden, Ana Arabolaza, Michael D Burkart, Hugo Gramajo | Metabolic Engineering | 2018-07-21 |
| Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism. | Amir Zarrinpar, Amandine Chaix, Zhenjiang Z Xu, Max W Chang, Clarisse A Marotz, Alan Saghatelian, Rob Knight, Satchidananda Panda | Nature Communications | 2018-07-20 |
| Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota. | Zheng-Shuang Hua, Yan-Ni Qu, Qiyun Zhu, En-Min Zhou, Yan-Ling Qi, Yi-Rui Yin, Yang-Zhi Rao, Ye Tian, Yu-Xian Li, Lan Liu, Cindy J Castelle, Brian P Hedlund, Wen-Sheng Shu, Rob Knight, Wen-Jun Li | Nature Communications | 2018-07-19 |
| Need for Laboratory Ecosystems To Unravel the Structures and Functions of Soil Microbial Communities Mediated by Chemistry. | Kateryna Zhalnina, Karsten Zengler, Dianne Newman, Trent R Northen | MBio | 2018-07-17 |
| Differential cell-intrinsic regulations of germinal center B and T cells by miR-146a and miR-146b. | Sunglim Cho, Hyang-Mi Lee, I-Shing Yu, Youn Soo Choi, Hsi-Yuan Huang, Somaye Sadat Hashemifar, Ling-Li Lin, Mei-Chi Chen, Nikita D Afanasiev, Aly Azeem Khan, Shu-Wha Lin, Alexander Y Rudensky, Shane Crotty, Li-Fan Lu | Nature Communications | 2018-07-16 |
| Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes. | Katherine R Amato, Jon G Sanders, Se Jin Song, Michael Nute, Jessica L Metcalf, Luke R Thompson, James T Morton, Amnon Amir, Valerie J McKenzie, Gregory Humphrey, Grant Gogul, James Gaffney, Andrea L Baden, Gillian A O Britton, Frank P Cuozzo, Anthony Di Fiore, Nathaniel J Dominy, Tony L Goldberg, Andres Gomez, Martin M Kowalewski, Rebecca J Lewis, Andres Link, Michelle L Sauther, Stacey Tecot, Bryan A White, Karen E Nelson, Rebecca M Stumpf, Rob Knight, Steven R Leigh | The ISME Journal | 2018-07-11 |
| Genome-wide fitness assessment during diurnal growth reveals an expanded role of the cyanobacterial circadian clock protein KaiA. | David G Welkie, Benjamin E Rubin, Yong-Gang Chang, Spencer Diamond, Scott A Rifkin, Andy LiWang, Susan S Golden | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2018-07-10 |
| Environmental radiation alters the gut microbiome of the bank vole Myodes glareolus. | Anton Lavrinienko, Tapio Mappes, Eugene Tukalenko, Timothy A Mousseau, Anders P Møller, Rob Knight, James T Morton, Luke R Thompson, Phillip C Watts | The ISME Journal | 2018-07-09 |
| Composition and Variation of the Human Milk Microbiota Are Influenced by Maternal and Early-Life Factors. | Shirin Moossavi, Shadi Sepehri, Bianca Robertson, Lars Bode, Sue Goruk, Catherine J Field, Lisa M Lix, Russell J de Souza, Allan B Becker, Piushkumar J Mandhane, Stuart E Turvey, Padmaja Subbarao, Theo J Moraes, Diana L Lefebvre, Malcolm R Sears, Ehsan Khafipour, Meghan B Azad | Cell Host & Microbe | 2018-07-08 |
| Author Correction: Inflammation-induced IgA cells dismantle anti-liver cancer immunity. | Shabnam Shalapour, Xue-Jia Lin, Ingmar N Bastian, John Brain, Alastair D Burt, Alexander A Aksenov, Alison F Vrbanac, Weihua Li, Andres Perkins, Takaji Matsutani, Zhenyu Zhong, Debanjan Dhar, Jose A Navas-Molina, Jun Xu, Rohit Loomba, Michael Downes, Ruth T Yu, Ronald M Evans, Pieter C Dorrestein, Rob Knight, Christopher Benner, Quentin M Anstee, Michael Karin | Nature | 2018-07-06 |
| 1α,25-dihydroxyvitamin D-eluting nanofibrous dressings induce endogenous antimicrobial peptide expression. | Jiang Jiang, Yang Zhang, Arup K Indra, Gitali Ganguli-Indra, Mai N Le, Hongjun Wang, Ronald R Hollins, Debra A Reilly, Mark A Carlson, Richard L Gallo, Adrian F Gombart, Jingwei Xie | Nanomedicine (London, England) | 2018-07-04 |
| Immunological Effects of Human Milk Oligosaccharides. | Vassilis Triantis, Lars Bode, R J Joost van Neerven | Frontiers In Pediatrics | 2018-07-02 |
| The Anti-Inflammatory Activities of Propionibacterium acnes CAMP Factor-Targeted Acne Vaccines. | Yanhan Wang, Tissa R Hata, Yun Larry Tong, Ming-Shan Kao, Christos C Zouboulis, Richard L Gallo, Chun-Ming Huang | The Journal Of Investigative Dermatology | 2018-06-30 |
| The Control of HIV After Antiretroviral Medication Pause (CHAMP) Study: Posttreatment Controllers Identified From 14 Clinical Studies. | Golnaz Namazi, Jesse M Fajnzylber, Evgenia Aga, Ronald J Bosch, Edward P Acosta, Radwa Sharaf, Wendy Hartogensis, Jeffrey M Jacobson, Elizabeth Connick, Paul Volberding, Daniel Skiest, David Margolis, Michael C Sneller, Susan J Little, Sara Gianella, Davey M Smith, Daniel R Kuritzkes, Roy M Gulick, John W Mellors, Vikram Mehraj, Rajesh T Gandhi, Ronald Mitsuyasu, Robert T Schooley, Keith Henry, Pablo Tebas, Steven G Deeks, Tae-Wook Chun, Ann C Collier, Jean-Pierre Routy, Frederick M Hecht, Bruce D Walker, Jonathan Z Li | The Journal Of Infectious Diseases | 2018-06-29 |
| Ancient Diet: Gut Microbiota, Immunity, and Health. | Kaitlyn Shondelmyer, Rob Knight, Anusha Sanivarapu, Shuji Ogino, Jairam K P Vanamala | The Yale Journal Of Biology And Medicine | 2018-06-28 |
| Large-scale replicated field study of maize rhizosphere identifies heritable microbes. | William A Walters, Zhao Jin, Nicholas Youngblut, Jason G Wallace, Jessica Sutter, Wei Zhang, Antonio González-Peña, Jason Peiffer, Omry Koren, Qiaojuan Shi, Rob Knight, Tijana Glavina Del Rio, Susannah G Tringe, Edward S Buckler, Jeffery L Dangl, Ruth E Ley | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2018-06-25 |
| Experimental Infection of by the Group II Intermediate Pathogen, . | Carla Fernandez, Aristea A Lubar, Joseph M Vinetz, Michael A Matthias | The American Journal Of Tropical Medicine And Hygiene | 2018-06-21 |
| Genomic Comparison Among Global Isolates of Serovars Copenhageni and Icterohaemorrhagiae Identified Natural Genetic Variation Caused by an Indel. | Luciane A Santos, Haritha Adhikarla, Xiting Yan, Zheng Wang, Derrick E Fouts, Joseph M Vinetz, Luiz C J Alcantara, Rudy A Hartskeerl, Marga G A Goris, Mathieu Picardeau, Mitermayer G Reis, Jeffrey P Townsend, Hongyu Zhao, Albert I Ko, Elsio A Wunder | Frontiers In Cellular And Infection Microbiology | 2018-06-19 |
| Accelerated Aging and Clearance of Host Anti-inflammatory Enzymes by Discrete Pathogens Fuels Sepsis. | Won Ho Yang, Douglas M Heithoff, Peter V Aziz, Benjamin Haslund-Gourley, Julia S Westman, Sonoko Narisawa, Anthony B Pinkerton, José Luis Millán, Victor Nizet, Michael J Mahan, Jamey D Marth | Cell Host & Microbe | 2018-06-18 |
| Human evolutionary loss of epithelial Neu5Gc expression and species-specific susceptibility to cholera. | Frederico Alisson-Silva, Janet Z Liu, Sandra L Diaz, Lingquan Deng, Mélanie G Gareau, Ronald Marchelletta, Xi Chen, Victor Nizet, Nissi Varki, Kim E Barrett, Ajit Varki | PLoS Pathogens | 2018-06-18 |
| The urinary microbiome in women with mixed urinary incontinence compared to similarly aged controls. | Yuko M Komesu, Holly E Richter, Benjamin Carper, Darrell L Dinwiddie, Emily S Lukacz, Nazema Y Siddiqui, Vivian W Sung, Halina M Zyczynski, Beri Ridgeway, Rebecca G Rogers, Lily A Arya, Donna Mazloomdoost, Marie G Gantz, | International Urogynecology Journal | 2018-06-16 |
| FAVITES: simultaneous simulation of transmission networks, phylogenetic trees and sequences. | Niema Moshiri, Manon Ragonnet-Cronin, Joel O Wertheim, Siavash Mirarab | Bioinformatics (Oxford, England) | 2018-06-15 |
| Adaptive laboratory evolution resolves energy depletion to maintain high aromatic metabolite phenotypes in Escherichia coli strains lacking the Phosphotransferase System. | Douglas McCloskey, Sibei Xu, Troy E Sandberg, Elizabeth Brunk, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O Palsson | Metabolic Engineering | 2018-06-15 |
| Temporal dynamics of eukaryotic microbial diversity at a coastal Pacific site. | Maitreyi Nagarkar, Peter D Countway, Yeong Du Yoo, Emy Daniels, Nicole J Poulton, Brian Palenik | The ISME Journal | 2018-06-13 |
| ALEdb 1.0: a database of mutations from adaptive laboratory evolution experimentation. | Patrick V Phaneuf, Dennis Gosting, Bernhard O Palsson, Adam M Feist | Nucleic Acids Research | 2018-06-12 |
| Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa. | Xin Fang, Jonathan M Monk, Nathan Mih, Bin Du, Anand V Sastry, Erol Kavvas, Yara Seif, Larry Smarr, Bernhard O Palsson | BMC Systems Biology | 2018-06-11 |
| Bacterioplankton drawdown of coral mass-spawned organic matter. | Ryan Guillemette, Ryo Kaneko, Jessica Blanton, Jasmine Tan, Matthias Witt, Samantha Hamilton, Eric E Allen, Mónica Medina, Koji Hamasaki, Boris P Koch, Farooq Azam | The ISME Journal | 2018-06-08 |
| Finger-Based Printed Sensors Integrated on a Glove for On-Site Screening Of Pseudomonas aeruginosa Virulence Factors. | Bianca Ciui, Mihaela Tertiş, Andreea Cernat, Robert Săndulescu, Joseph Wang, Cecilia Cristea | Analytical Chemistry | 2018-06-08 |
| The role of inter-species interactions in Salinispora specialized metabolism. | Nastassia V Patin, Dimitrios J Floros, Chambers C Hughes, Pieter C Dorrestein, Paul R Jensen | Microbiology (Reading, England) | 2018-06-07 |
| Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome. | Anupriya Tripathi, Alexey V Melnik, Jin Xue, Orit Poulsen, Michael J Meehan, Gregory Humphrey, Lingjing Jiang, Gail Ackermann, Daniel McDonald, Dan Zhou, Rob Knight, Pieter C Dorrestein, Gabriel G Haddad | MSystems | 2018-06-05 |
| Recurrent group A tonsillitis is an immunosusceptibility disease involving antibody deficiency and aberrant T cells. | Jennifer M Dan, Colin Havenar-Daughton, Kayla Kendric, Rita Al-Kolla, Kirti Kaushik, Sandy L Rosales, Ericka L Anderson, Christopher N LaRock, Pandurangan Vijayanand, Grégory Seumois, David Layfield, Ramsey I Cutress, Christian H Ottensmeier, Cecilia S Lindestam Arlehamn, Alessandro Sette, Victor Nizet, Marcella Bothwell, Matthew Brigger, Shane Crotty | Science Translational Medicine | 2018-06-04 |
| Ethanolamine ameliorates mitochondrial dysfunction in cardiolipin-deficient yeast cells. | Writoban Basu Ball, Charli D Baker, John K Neff, Gabriel L Apfel, Kim A Lagerborg, Gašper Žun, Uroš Petrovič, Mohit Jain, Vishal M Gohil | The Journal Of Biological Chemistry | 2018-06-04 |
| The gut microbiome of nonhuman primates: Lessons in ecology and evolution. | Jonathan B Clayton, Andres Gomez, Katherine Amato, Dan Knights, Dominic A Travis, Ran Blekhman, Rob Knight, Steven Leigh, Rebecca Stumpf, Tiffany Wolf, Kenneth E Glander, Francis Cabana, Timothy J Johnson | American Journal Of Primatology | 2018-06-04 |
| Developmental regulation of kidney and liver solute carrier and ATP-binding cassette drug transporters and drug metabolizing enzymes: the role of remote organ communication. | Jeremiah D Momper, Sanjay K Nigam | Expert Opinion On Drug Metabolism & Toxicology | 2018-06-04 |
| New insights into the pathogenesis and treatment of non-viral hepatocellular carcinoma: a balancing act between immunosuppression and immunosurveillance. | Michael Karin | Precision Clinical Medicine | 2018-06-04 |
| Gut microbiome and magnetic resonance spectroscopy study of subjects at ultra-high risk for psychosis may support the membrane hypothesis. | Ying He, Tomasz Kosciolek, Jinsong Tang, Yao Zhou, Zongchang Li, Xiaoqian Ma, Qiyun Zhu, Ning Yuan, Liu Yuan, Chunwang Li, Ke Jin, Rob Knight, Ming T Tsuang, Xiaogang Chen | European Psychiatry : The Journal Of The Association Of European Psychiatrists | 2018-06-02 |
| Shared and Distinct Features of Human Milk and Infant Stool Viromes. | Pia S Pannaraj, Melissa Ly, Chiara Cerini, Monica Saavedra, Grace M Aldrovandi, Abdul A Saboory, Kevin M Johnson, David T Pride | Frontiers In Microbiology | 2018-06-01 |
| The systems biology of uric acid transporters: the role of remote sensing and signaling. | Sanjay K Nigam, Vibha Bhatnagar | Current Opinion In Nephrology And Hypertension | 2018-05-31 |
| Whole blood transcriptional profiles as a prognostic tool in complete and incomplete Kawasaki Disease. | Preeti Jaggi, Asuncion Mejias, Zhaohui Xu, Han Yin, Melissa Moore-Clingenpeel, Bennett Smith, Jane C Burns, Adriana H Tremoulet, Alejandro Jordan-Villegas, Damien Chaussabel, Karen Texter, Virginia Pascual, Octavio Ramilo | PloS One | 2018-05-29 |
| Best practices for analysing microbiomes. | Rob Knight, Alison Vrbanac, Bryn C Taylor, Alexander Aksenov, Chris Callewaert, Justine Debelius, Antonio Gonzalez, Tomasz Kosciolek, Laura-Isobel McCall, Daniel McDonald, Alexey V Melnik, James T Morton, Jose Navas, Robert A Quinn, Jon G Sanders, Austin D Swafford, Luke R Thompson, Anupriya Tripathi, Zhenjiang Z Xu, Jesse R Zaneveld, Qiyun Zhu, J Gregory Caporaso, Pieter C Dorrestein | Nature Reviews. Microbiology | 2018-05-26 |
| Decontaminating surfaces with atomized disinfectants generated by a novel thickness-mode lithium niobate device. | Monika Kumaraswamy, Sean Collignon, Carter Do, Janie Kim, Victor Nizet, James Friend | Applied Microbiology And Biotechnology | 2018-05-26 |
| Adaptation to the coupling of glycolysis to toxic methylglyoxal production in tpiA deletion strains of Escherichia coli requires synchronized and counterintuitive genetic changes. | Douglas McCloskey, Sibei Xu, Troy E Sandberg, Elizabeth Brunk, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O Palsson | Metabolic Engineering | 2018-05-26 |
| The Two-Component System AgrAC Displays Four Distinct Genomic Arrangements That Delineate Genomic Virulence Factor Signatures. | Kumari S Choudhary, Nathan Mih, Jonathan Monk, Erol Kavvas, James T Yurkovich, George Sakoulas, Bernhard O Palsson | Frontiers In Microbiology | 2018-05-25 |
| Methods for phylogenetic analysis of microbiome data. | Alex D Washburne, James T Morton, Jon Sanders, Daniel McDonald, Qiyun Zhu, Angela M Oliverio, Rob Knight | Nature Microbiology | 2018-05-24 |
| SHMT2 and the BRCC36/BRISC deubiquitinase regulate HIV-1 Tat K63-ubiquitylation and destruction by autophagy. | Muyu Xu, James J Moresco, Max Chang, Amey Mukim, Davey Smith, Jolene K Diedrich, John R Yates, Katherine A Jones | PLoS Pathogens | 2018-05-23 |
| Corrigendum: The Effect of Hydrostatic Pressure on Enrichments of Hydrocarbon Degrading Microbes From the Gulf of Mexico Following the Deepwater Horizon Oil Spill. | Angeliki Marietou, Roger Chastain, Felix Beulig, Alberto Scoma, Terry C Hazen, Douglas H Bartlett | Frontiers In Microbiology | 2018-05-23 |
| Publisher Correction: The gut-liver axis and the intersection with the microbiome. | Anupriya Tripathi, Justine Debelius, David A Brenner, Michael Karin, Rohit Loomba, Bernd Schnabl, Rob Knight | Nature Reviews. Gastroenterology & Hepatology | 2018-05-23 |
| Preface. | Bradley S Moore | Methods In Enzymology | 2018-05-22 |
| Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm. | Jennifer M Michaud, Luke R Thompson, Drishti Kaul, Josh L Espinoza, R Alexander Richter, Zhenjiang Zech Xu, Christopher Lee, Kevin M Pham, Charlotte M Beall, Francesca Malfatti, Farooq Azam, Rob Knight, Michael D Burkart, Christopher L Dupont, Kimberly A Prather | Nature Communications | 2018-05-22 |
| Link between gut-microbiome derived metabolite and shared gene-effects with hepatic steatosis and fibrosis in NAFLD. | Cyrielle Caussy, Cynthia Hsu, Min-Tzu Lo, Amy Liu, Ricki Bettencourt, Veeral H Ajmera, Shirin Bassirian, Jonathan Hooker, Ethan Sy, Lisa Richards, Nicholas Schork, Bernd Schnabl, David A Brenner, Claude B Sirlin, Chi-Hua Chen, Rohit Loomba, | Hepatology (Baltimore, Md.) | 2018-05-20 |
| An internally quenched peptide as a new model substrate for rhomboid intramembrane proteases. | Elena Arutyunova, Zhenze Jiang, Jian Yang, Ayodeji N Kulepa, Howard S Young, Steven Verhelst, Anthony J O'Donoghue, M Joanne Lemieux | Biological Chemistry | 2018-05-17 |
| A Worm's Gut Feelings: Neuronal Muscarinic and Epithelial Canonical Wnt Pathways Promote Antimicrobial Defense. | Romana R Gerner, Manuela Raffatellu | Immunity | 2018-05-17 |
| Group A M1T1 Intracellular Infection of Primary Tonsil Epithelial Cells Dampens Levels of Secreted IL-8 Through the Action of SpyCEP. | Amelia T Soderholm, Timothy C Barnett, Othmar Korn, Tania Rivera-Hernandez, Lisa M Seymour, Benjamin L Schulz, Victor Nizet, Christine A Wells, Matthew J Sweet, Mark J Walker | Frontiers In Cellular And Infection Microbiology | 2018-05-17 |
| Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin. | Nicholas A Bokulich, Benjamin D Kaehler, Jai Ram Rideout, Matthew Dillon, Evan Bolyen, Rob Knight, Gavin A Huttley, J Gregory Caporaso | Microbiome | 2018-05-17 |
| ChIP-exo interrogation of Crp, DNA, and RNAP holoenzyme interactions. | Haythem Latif, Stephen Federowicz, Ali Ebrahim, Janna Tarasova, Richard Szubin, Jose Utrilla, Karsten Zengler, Bernhard O Palsson | PloS One | 2018-05-17 |
| Defining Host Responses during Systemic Bacterial Infection through Construction of a Murine Organ Proteome Atlas. | John D Lapek, Robert H Mills, Jacob M Wozniak, Anaamika Campeau, Ronnie H Fang, Xiaoli Wei, Kirsten van de Groep, Araceli Perez-Lopez, Nina M van Sorge, Manuela Raffatellu, Rob Knight, Liangfang Zhang, David J Gonzalez | Cell Systems | 2018-05-16 |
| Dot1 promotes H2B ubiquitination by a methyltransferase-independent mechanism. | Tibor van Welsem, Tessy Korthout, Reggy Ekkebus, Dominique Morais, Thom M Molenaar, Kirsten van Harten, Deepani W Poramba-Liyanage, Su Ming Sun, Tineke L Lenstra, Rohith Srivas, Trey Ideker, Frank C P Holstege, Haico van Attikum, Farid El Oualid, Huib Ovaa, Iris J E Stulemeijer, Hanneke Vlaming, Fred van Leeuwen | Nucleic Acids Research | 2018-05-16 |
| American Gut: an Open Platform for Citizen Science Microbiome Research. | Daniel McDonald, Embriette Hyde, Justine W Debelius, James T Morton, Antonio Gonzalez, Gail Ackermann, Alexander A Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen, Lindsay DeRight Goldasich, Pieter C Dorrestein, Robert R Dunn, Ashkaan K Fahimipour, James Gaffney, Jack A Gilbert, Grant Gogul, Jessica L Green, Philip Hugenholtz, Greg Humphrey, Curtis Huttenhower, Matthew A Jackson, Stefan Janssen, Dilip V Jeste, Lingjing Jiang, Scott T Kelley, Dan Knights, Tomasz Kosciolek, Joshua Ladau, Jeff Leach, Clarisse Marotz, Dmitry Meleshko, Alexey V Melnik, Jessica L Metcalf, Hosein Mohimani, Emmanuel Montassier, Jose Navas-Molina, Tanya T Nguyen, Shyamal Peddada, Pavel Pevzner, Katherine S Pollard, Gholamali Rahnavard, Adam Robbins-Pianka, Naseer Sangwan, Joshua Shorenstein, Larry Smarr, Se Jin Song, Timothy Spector, Austin D Swafford, Varykina G Thackray, Luke R Thompson, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Alison Vrbanac, Paul Wischmeyer, Elaine Wolfe, Qiyun Zhu, , Rob Knight | MSystems | 2018-05-15 |
| The gut-liver axis and the intersection with the microbiome. | Anupriya Tripathi, Justine Debelius, David A Brenner, Michael Karin, Rohit Loomba, Bernd Schnabl, Rob Knight | Nature Reviews. Gastroenterology & Hepatology | 2018-05-12 |
| Viral Capsid Trafficking along Treadmilling Tubulin Filaments in Bacteria. | Vorrapon Chaikeeratisak, Kanika Khanna, Katrina T Nguyen, Joseph Sugie, MacKennon E Egan, Marcella L Erb, Anastasia Vavilina, Poochit Nonejuie, Eliza Nieweglowska, Kit Pogliano, David A Agard, Elizabeth Villa, Joe Pogliano | Cell | 2018-05-11 |
| Antiviral treatment of childhood influenza: an update. | Amaran Moodley, John S Bradley, David W Kimberlin | Current Opinion In Pediatrics | 2018-05-11 |
| Coating nanoparticles with gastric epithelial cell membrane for targeted antibiotic delivery against infection. | Pavimol Angsantikul, Soracha Thamphiwatana, Qiangzhe Zhang, Kevin Spiekermann, Jia Zhuang, Ronnie H Fang, Weiwei Gao, Marygorret Obonyo, Liangfang Zhang | Advanced Therapeutics | 2018-05-08 |
| Biosynthesis of t-Butyl in Apratoxin A: Functional Analysis and Architecture of a PKS Loading Module. | Meredith A Skiba, Andrew P Sikkema, Nathan A Moss, Andrew N Lowell, Min Su, Rebecca M Sturgis, Lena Gerwick, William H Gerwick, David H Sherman, Janet L Smith | ACS Chemical Biology | 2018-05-08 |
| Stabilization of Hypoxia-Inducible Factor-1 Alpha Augments the Therapeutic Capacity of Bone Marrow-Derived Mesenchymal Stem Cells in Experimental Pneumonia. | Naveen Gupta, Victor Nizet | Frontiers In Medicine | 2018-05-04 |
| Characterization of PdCP1, a serine carboxypeptidase from Pseudogymnoascus destructans, the causal agent of White-nose Syndrome. | Chapman Beekman, Zhenze Jiang, Brian M Suzuki, Jonathan M Palmer, Daniel L Lindner, Anthony J O'Donoghue, Giselle M Knudsen, Richard J Bennett | Biological Chemistry | 2018-05-01 |
| Collection, Culturing, and Genome Analyses of Tropical Marine Filamentous Benthic Cyanobacteria. | Nathan A Moss, Tiago Leao, Evgenia Glukhov, Lena Gerwick, William H Gerwick | Methods In Enzymology | 2018-04-27 |
| Exposure to toxic metals triggers unique responses from the rat gut microbiota. | Joshua B Richardson, Blair C R Dancy, Cassandra L Horton, Young S Lee, Michael S Madejczyk, Zhenjiang Zech Xu, Gail Ackermann, Gregory Humphrey, Gustavo Palacios, Rob Knight, John A Lewis | Scientific Reports | 2018-04-26 |
| The Effect of Hydrostatic Pressure on Enrichments of Hydrocarbon Degrading Microbes From the Gulf of Mexico Following the Deepwater Horizon Oil Spill. | Angeliki Marietou, Roger Chastain, Felix Beulig, Alberto Scoma, Terry C Hazen, Douglas H Bartlett | Frontiers In Microbiology | 2018-04-26 |
| Human Milk Oligosaccharide Concentrations Are Associated with Multiple Fixed and Modifiable Maternal Characteristics, Environmental Factors, and Feeding Practices. | Meghan B Azad, Bianca Robertson, Faisal Atakora, Allan B Becker, Padmaja Subbarao, Theo J Moraes, Piushkumar J Mandhane, Stuart E Turvey, Diana L Lefebvre, Malcolm R Sears, Lars Bode | The Journal Of Nutrition | 2018-04-25 |
| In Situ Gene Therapy via AAV-CRISPR-Cas9-Mediated Targeted Gene Regulation. | Ana M Moreno, Xin Fu, Jie Zhu, Dhruva Katrekar, Yu-Ru V Shih, John Marlett, Jessica Cabotaje, Jasmine Tat, John Naughton, Leszek Lisowski, Shyni Varghese, Kang Zhang, Prashant Mali | Molecular Therapy : The Journal Of The American Society Of Gene Therapy | 2018-04-25 |
| SmSP2: A serine protease secreted by the blood fluke pathogen Schistosoma mansoni with anti-hemostatic properties. | Adrian Leontovyč, Lenka Ulrychová, Anthony J O'Donoghue, Jiří Vondrášek, Lucie Marešová, Martin Hubálek, Pavla Fajtová, Marta Chanová, Zhenze Jiang, Charles S Craik, Conor R Caffrey, Michael Mareš, Jan Dvořák, Martin Horn | PLoS Neglected Tropical Diseases | 2018-04-20 |
| Growth of HIV-1 Molecular Transmission Clusters in New York City. | Joel O Wertheim, Ben Murrell, Sanjay R Mehta, Lisa A Forgione, Sergei L Kosakovsky Pond, Davey M Smith, Lucia V Torian | The Journal Of Infectious Diseases | 2018-04-20 |
| Of mice, men and immunity: a case for evolutionary systems biology. | Peter B Ernst, Anne-Ruxandra Carvunis | Nature Immunology | 2018-04-20 |
| Organohalogens Naturally Biosynthesized in Marine Environments and Produced as Disinfection Byproducts Alter Sarco/Endoplasmic Reticulum Ca Dynamics. | Jing Zheng, Shaun M K McKinnie, Abrahim El Gamal, Wei Feng, Yao Dong, Vinayak Agarwal, William Fenical, Abdhesh Kumar, Zhengyu Cao, Bradley S Moore, Isaac N Pessah | Environmental Science & Technology | 2018-04-20 |
| Propagating annotations of molecular networks using in silico fragmentation. | Ricardo R da Silva, Mingxun Wang, Louis-Félix Nothias, Justin J J van der Hooft, Andrés Mauricio Caraballo-Rodríguez, Evan Fox, Marcy J Balunas, Jonathan L Klassen, Norberto Peporine Lopes, Pieter C Dorrestein | PLoS Computational Biology | 2018-04-18 |
| Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information. | Stefan Janssen, Daniel McDonald, Antonio Gonzalez, Jose A Navas-Molina, Lingjing Jiang, Zhenjiang Zech Xu, Kevin Winker, Deborah M Kado, Eric Orwoll, Mark Manary, Siavash Mirarab, Rob Knight | MSystems | 2018-04-17 |
| Metabolic potential and in situ transcriptomic profiles of previously uncharacterized key microbial groups involved in coupled carbon, nitrogen and sulfur cycling in anoxic marine zones. | Alvaro M Plominsky, Nicole Trefault, Sheila Podell, Jessica M Blanton, Rodrigo De la Iglesia, Eric E Allen, Peter von Dassow, Osvaldo Ulloa | Environmental Microbiology | 2018-04-16 |
| Modulation of the intestinal bile acid/farnesoid X receptor/fibroblast growth factor 15 axis improves alcoholic liver disease in mice. | Phillipp Hartmann, Katrin Hochrath, Angela Horvath, Peng Chen, Caroline T Seebauer, Cristina Llorente, Lirui Wang, Yazen Alnouti, Derrick E Fouts, Peter Stärkel, Rohit Loomba, Sally Coulter, Christopher Liddle, Ruth T Yu, Lei Ling, Stephen J Rossi, Alex M DePaoli, Michael Downes, Ronald M Evans, David A Brenner, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2018-04-16 |
| Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655. | Ye Gao, James T Yurkovich, Sang Woo Seo, Ilyas Kabimoldayev, Andreas Dräger, Ke Chen, Anand V Sastry, Xin Fang, Nathan Mih, Laurence Yang, Johannes Eichner, Byung-Kwan Cho, Donghyuk Kim, Bernhard O Palsson | Nucleic Acids Research | 2018-04-13 |
| A High-Resolution Digital DNA Melting Platform for Robust Sequence Profiling and Enhanced Genotype Discrimination. | Mridu Sinha, Hannah Mack, Todd P Coleman, Stephanie I Fraley | SLAS Technology | 2018-04-13 |
| Herd Immunity Likely Protected the Men Who Have Sex With Men in the Recent Hepatitis A Outbreak in San Diego, California. | Davey Smith, Christina Huynh, Adam J Moore, Andrew Frick, Christy Anderson, Magali Porrachia, Brianna Scott, Sarah Stous, Robert Schooley, Susan Little, AsherLev T Santos | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2018-04-12 |
| Dysregulation of serum bile acids and FGF19 in alcoholic hepatitis. | Katharina Brandl, Phillipp Hartmann, Lily J Jih, Donald P Pizzo, Josepmaria Argemi, Meritxell Ventura-Cots, Sally Coulter, Christopher Liddle, Lei Ling, Stephen J Rossi, Alex M DePaoli, Rohit Loomba, Wajahat Z Mehal, Derrick E Fouts, Michael R Lucey, Francisco Bosques-Padilla, Philippe Mathurin, Alexander Louvet, Guadalupe Garcia-Tsao, Elizabeth C Verna, Juan G Abraldes, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie Shawcross, Peter Stärkel, Samuel B Ho, Ramon Bataller, Bernd Schnabl | Journal Of Hepatology | 2018-04-12 |
| Diversity of the midstream urine microbiome in adults with chronic kidney disease. | Holly Kramer, Gina Kuffel, Krystal Thomas-White, Alan J Wolfe, Kavitha Vellanki, David J Leehey, Vinod K Bansal, Linda Brubaker, Robert Flanigan, Julia Koval, Anuradha Wadhwa, Michael J Zilliox | International Urology And Nephrology | 2018-04-12 |
| Disruption of in Head and Neck Cancer Promotes Favorable Chemotherapeutic Responses Linked to Hypomethylation. | Nam Bui, Justin K Huang, Ana Bojorquez-Gomez, Katherine Licon, Kyle S Sanchez, Sean N Tang, Alex N Beckett, Tina Wang, Wei Zhang, John Paul Shen, Jason F Kreisberg, Trey Ideker | Molecular Cancer Therapeutics | 2018-04-10 |
| Genome Reduction in Species within the Gut of an Amphipod from the Ocean's Deepest Point. | Weipeng Zhang, Ren-Mao Tian, Jin Sun, Salim Bougouffa, Wei Ding, Lin Cai, Yi Lan, Haoya Tong, Yongxin Li, Alan J Jamieson, Vladimir B Bajic, Jeffrey C Drazen, Douglas Bartlett, Pei-Yuan Qian | MSystems | 2018-04-10 |
| Earth Microbiome Project and Global Systems Biology. | Jack A Gilbert, Janet K Jansson, Rob Knight | MSystems | 2018-04-10 |
| Wnt5A Signaling Promotes Defense Against Bacterial Pathogens by Activating a Host Autophagy Circuit. | Suborno Jati, Suman Kundu, Arijit Chakraborty, Sushil Kumar Mahata, Victor Nizet, Malini Sen | Frontiers In Immunology | 2018-04-09 |
| Hopanoid-producing bacteria in the Red Sea include the major marine nitrite oxidizers. | Jenan J Kharbush, Luke R Thompson, Mohamed Fauzi Haroon, Rob Knight, Lihini I Aluwihare | FEMS Microbiology Ecology | 2018-04-09 |
| Quorum sensing between bacterial species on the skin protects against epidermal injury in atopic dermatitis. | Michael R Williams, Stephen K Costa, Livia S Zaramela, Shadi Khalil, Daniel A Todd, Heather L Winter, James A Sanford, Alan M O'Neill, Marc C Liggins, Teruaki Nakatsuji, Nadja B Cech, Ambrose L Cheung, Karsten Zengler, Alexander R Horswill, Richard L Gallo | Science Translational Medicine | 2018-04-09 |
| Human Milk Oligosaccharides at the Interface of Maternal-Infant Health. | Lars Bode | Breastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine | 2018-04-07 |
| Integrated Approaches to Analyze Big Data in the Perinatal/Neonatal Space. | Rob Knight | Breastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine | 2018-04-07 |
| Characterization and Application of Marine Microbial Omega-3 Polyunsaturated Fatty Acid Synthesis. | Marco N Allemann, Eric E Allen | Methods In Enzymology | 2018-04-06 |
| The substrate-binding cap of the UDP-diacylglucosamine pyrophosphatase LpxH is highly flexible, enabling facile substrate binding and product release. | Thomas E Bohl, Pek Ieong, John K Lee, Thomas Lee, Jayakanth Kankanala, Ke Shi, Özlem Demir, Kayo Kurahashi, Rommie E Amaro, Zhengqiang Wang, Hideki Aihara | The Journal Of Biological Chemistry | 2018-04-06 |
| Restoring mitochondrial calcium uniporter expression in diabetic mouse heart improves mitochondrial calcium handling and cardiac function. | Jorge Suarez, Federico Cividini, Brian T Scott, Kim Lehmann, Julieta Diaz-Juarez, Tanja Diemer, Anzhi Dai, Jorge A Suarez, Mohit Jain, Wolfgang H Dillmann | The Journal Of Biological Chemistry | 2018-04-06 |
| Vertically distinct microbial communities in the Mariana and Kermadec trenches. | Logan M Peoples, Sierra Donaldson, Oladayo Osuntokun, Qing Xia, Alex Nelson, Jessica Blanton, Eric E Allen, Matthew J Church, Douglas H Bartlett | PloS One | 2018-04-05 |
| Genome Sequence of the Oleaginous Green Alga, UTEX 395. | Michael T Guarnieri, Jennifer Levering, Calvin A Henard, Jeffrey L Boore, Michael J Betenbaugh, Karsten Zengler, Eric P Knoshaug | Frontiers In Bioengineering And Biotechnology | 2018-04-05 |
| Antigen-specific antibody Fc glycosylation enhances humoral immunity via the recruitment of complement. | Giuseppe Lofano, Matthew J Gorman, Ashraf S Yousif, Wen-Han Yu, Julie M Fox, Anne-Sophie Dugast, Margaret E Ackerman, Todd J Suscovich, Joshua Weiner, Dan Barouch, Hendrik Streeck, Susan Little, Davey Smith, Douglas Richman, Douglas Lauffenburger, Bruce D Walker, Michael S Diamond, Galit Alter | Science Immunology | 2018-04-03 |
| Characterization and Biochemical Assays of Streptomyces Vanadium-Dependent Chloroperoxidases. | Shaun M K McKinnie, Zachary D Miles, Bradley S Moore | Methods In Enzymology | 2018-04-02 |
| High-throughput interaction screens illuminate the role of c-di-AMP in cyanobacterial nighttime survival. | Benjamin E Rubin, TuAnh Ngoc Huynh, David G Welkie, Spencer Diamond, Ryan Simkovsky, Emily C Pierce, Arnaud Taton, Laura C Lowe, Jenny J Lee, Scott A Rifkin, Joshua J Woodward, Susan S Golden | PLoS Genetics | 2018-04-02 |
| The social network of microorganisms - how auxotrophies shape complex communities. | Karsten Zengler, Livia S Zaramela | Nature Reviews. Microbiology | 2018-03-31 |
| Template-assisted synthesis of adenine-mutagenized cDNA by a retroelement protein complex. | Sumit Handa, Yong Jiang, Sijia Tao, Robert Foreman, Raymond F Schinazi, Jeff F Miller, Partho Ghosh | Nucleic Acids Research | 2018-03-22 |
| Rational engineering of synthetic microbial systems: from single cells to consortia. | Philip Bittihn, M Omar Din, Lev S Tsimring, Jeff Hasty | Current Opinion In Microbiology | 2018-03-22 |
| High-Level dCas9 Expression Induces Abnormal Cell Morphology in Escherichia coli. | Suhyung Cho, Donghui Choe, Eunju Lee, Sun Chang Kim, Bernhard Palsson, Byung-Kwan Cho | ACS Synthetic Biology | 2018-03-21 |
| BALDR: a computational pipeline for paired heavy and light chain immunoglobulin reconstruction in single-cell RNA-seq data. | Amit A Upadhyay, Robert C Kauffman, Amber N Wolabaugh, Alice Cho, Nirav B Patel, Samantha M Reiss, Colin Havenar-Daughton, Reem A Dawoud, Gregory K Tharp, Iñaki Sanz, Bali Pulendran, Shane Crotty, F Eun-Hyung Lee, Jens Wrammert, Steven E Bosinger | Genome Medicine | 2018-03-20 |
| AIBP protects against metabolic abnormalities and atherosclerosis. | Dina A Schneider, Soo-Ho Choi, Colin Agatisa-Boyle, Laurence Zhu, Jungsu Kim, Jennifer Pattison, Dorothy D Sears, Philip L S M Gordts, Longhou Fang, Yury I Miller | Journal Of Lipid Research | 2018-03-20 |
| Characterization of murine antibody responses to vaccinia virus envelope protein A14 reveals an immunodominant antigen lacking of effective neutralization targets. | Xiangzhi Meng, Thomas Kaever, Bo Yan, Paula Traktman, Dirk M Zajonc, Bjoern Peters, Shane Crotty, Yan Xiang | Virology | 2018-03-17 |
| Houston Consensus Conference on Testing for Helicobacter pylori Infection in the United States. | Hashem B El-Serag, John Y Kao, Fasiha Kanwal, Mark Gilger, Frank LoVecchio, Steven F Moss, Sheila E Crowe, Adam Elfant, Thomas Haas, Ronald J Hapke, David Y Graham | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2018-03-17 |
| Developing Plasmodium vivax Resources for Liver Stage Study in the Peruvian Amazon Region. | Pamela Orjuela-Sanchez, Zaira Hellen Villa, Marta Moreno, Carlos Tong-Rios, Stephan Meister, Gregory M LaMonte, Brice Campo, Joseph M Vinetz, Elizabeth A Winzeler | ACS Infectious Diseases | 2018-03-15 |
| KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples. | Jeremiah J Minich, Qiyun Zhu, Stefan Janssen, Ryan Hendrickson, Amnon Amir, Russ Vetter, John Hyde, Megan M Doty, Kristina Stillwell, James Benardini, Jae H Kim, Eric E Allen, Kasthuri Venkateswaran, Rob Knight | MSystems | 2018-03-13 |
| Humanized Exposures of a β-Lactam-β-Lactamase Inhibitor, Tazobactam, versus Non-β-Lactam-β-Lactamase Inhibitor, Avibactam, with or without Colistin, against Acinetobacter baumannii in Murine Thigh and Lung Infection Models. | Marguerite L Monogue, George Sakoulas, Victor Nizet, David P Nicolau | Pharmacology | 2018-03-13 |
| Experimental Chagas disease-induced perturbations of the fecal microbiome and metabolome. | Laura-Isobel McCall, Anupriya Tripathi, Fernando Vargas, Rob Knight, Pieter C Dorrestein, Jair L Siqueira-Neto | PLoS Neglected Tropical Diseases | 2018-03-12 |
| Samholides, Swinholide-Related Metabolites from a Marine Cyanobacterium cf. Phormidium sp. | Yiwen Tao, Pinglin Li, Daojing Zhang, Evgenia Glukhov, Lena Gerwick, Chen Zhang, Thomas F Murray, William H Gerwick | The Journal Of Organic Chemistry | 2018-03-08 |
| Gut microbiota mediates diurnal variation of acetaminophen induced acute liver injury in mice. | Shenhai Gong, Tian Lan, Liyan Zeng, Haihua Luo, Xiaoyu Yang, Na Li, Xiaojiao Chen, Zhanguo Liu, Rui Li, Sanda Win, Shuwen Liu, Hongwei Zhou, Bernd Schnabl, Yong Jiang, Neil Kaplowitz, Peng Chen | Journal Of Hepatology | 2018-03-08 |
| Chikungunya Arthritis Mechanisms in the Americas: A Cross-Sectional Analysis of Chikungunya Arthritis Patients Twenty-Two Months After Infection Demonstrating No Detectable Viral Persistence in Synovial Fluid. | Aileen Y Chang, Karen A O Martins, Liliana Encinales, St Patrick Reid, Marlon Acuña, Carlos Encinales, Christian B Matranga, Nelly Pacheco, Carlos Cure, Bhavarth Shukla, Teofilo Ruiz Arteta, Richard Amdur, Lisa H Cazares, Melissa Gregory, Michael D Ward, Alexandra Porras, Alejandro Rico Mendoza, Lian Dong, Tara Kenny, Ernie Brueggemann, Lydia G Downey, Priyanka Kamalapathy, Paola Lichtenberger, Orlando Falls, Gary L Simon, Jeffrey M Bethony, Gary S Firestein | Arthritis & Rheumatology (Hoboken, N.J.) | 2018-03-07 |
| Neurocognitive impairment with hepatitis C and HIV co-infection in Southern Brazil. | Sérgio Monteiro de Almeida, Ana Paula de Pereira, Maria Lucia Alves Pedroso, Clea E Ribeiro, Indianara Rotta, Bin Tang, Anya Umlauf, Donald Franklin, Rowan G Saloner, Maria Geny Ribas Batista, Scott Letendre, Robert K Heaton, Ronald J Ellis, Mariana Cherner, | Journal Of Neurovirology | 2018-03-07 |
| Group B Streptococcus Biofilm Regulatory Protein A Contributes to Bacterial Physiology and Innate Immune Resistance. | Kathryn A Patras, Jaclyn Derieux, Mahmoud M Al-Bassam, Nichole Adiletta, Alison Vrbanac, John D Lapek, Karsten Zengler, David J Gonzalez, Victor Nizet | The Journal Of Infectious Diseases | 2018-03-06 |
| The Role of Ion Transporters in the Pathophysiology of Infectious Diarrhea. | Soumita Das, Rashini Jayaratne, Kim E Barrett | Cellular And Molecular Gastroenterology And Hepatology | 2018-03-05 |
| Frequency of Chronic Joint Pain Following Chikungunya Virus Infection: A Colombian Cohort Study. | Aileen Y Chang, Liliana Encinales, Alexandra Porras, Nelly Pacheco, St Patrick Reid, Karen A O Martins, Shamila Pacheco, Eyda Bravo, Marianda Navarno, Alejandro Rico Mendoza, Richard Amdur, Priyanka Kamalapathy, Gary S Firestein, Jeffrey M Bethony, Gary L Simon | Arthritis & Rheumatology (Hoboken, N.J.) | 2018-03-02 |
| Bioactivity-Based Molecular Networking for the Discovery of Drug Leads in Natural Product Bioassay-Guided Fractionation. | Louis-Félix Nothias, Mélissa Nothias-Esposito, Ricardo da Silva, Mingxun Wang, Ivan Protsyuk, Zheng Zhang, Abi Sarvepalli, Pieter Leyssen, David Touboul, Jean Costa, Julien Paolini, Theodore Alexandrov, Marc Litaudon, Pieter C Dorrestein | Journal Of Natural Products | 2018-03-02 |
| Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions. | Erol S Kavvas, Yara Seif, James T Yurkovich, Charles Norsigian, Saugat Poudel, William W Greenwald, Sankha Ghatak, Bernhard O Palsson, Jonathan M Monk | BMC Systems Biology | 2018-03-02 |
| The Role of Intestinal C-type Regenerating Islet Derived-3 Lectins for Nonalcoholic Steatohepatitis. | Sena Bluemel, Lirui Wang, Cameron Martino, Suhan Lee, Yanhan Wang, Brandon Williams, Angela Horvath, Vanessa Stadlbauer, Karsten Zengler, Bernd Schnabl | Hepatology Communications | 2018-02-28 |
| Emerging Technologies for Molecular Diagnosis of Sepsis. | Mridu Sinha, Julietta Jupe, Hannah Mack, Todd P Coleman, Shelley M Lawrence, Stephanie I Fraley | Clinical Microbiology Reviews | 2018-02-28 |
| A commensal strain of protects against skin neoplasia. | Teruaki Nakatsuji, Tiffany H Chen, Anna M Butcher, Lynnie L Trzoss, Sang-Jip Nam, Karina T Shirakawa, Wei Zhou, Julia Oh, Michael Otto, William Fenical, Richard L Gallo | Science Advances | 2018-02-28 |
| Creating a 3D microbial and chemical snapshot of a human habitat. | Clifford A Kapono, James T Morton, Amina Bouslimani, Alexey V Melnik, Kayla Orlinsky, Tal Luzzatto Knaan, Neha Garg, Yoshiki Vázquez-Baeza, Ivan Protsyuk, Stefan Janssen, Qiyun Zhu, Theodore Alexandrov, Larry Smarr, Rob Knight, Pieter C Dorrestein | Scientific Reports | 2018-02-27 |
| Improving saliva shotgun metagenomics by chemical host DNA depletion. | Clarisse A Marotz, Jon G Sanders, Cristal Zuniga, Livia S Zaramela, Rob Knight, Karsten Zengler | Microbiome | 2018-02-27 |
| An apoplastic peptide activates salicylic acid signalling in maize. | Sebastian Ziemann, Karina van der Linde, Urs Lahrmann, Beyda Acar, Farnusch Kaschani, Tom Colby, Markus Kaiser, Yezhang Ding, Eric Schmelz, Alisa Huffaker, Nicholas Holton, Cyril Zipfel, Gunther Doehlemann | Nature Plants | 2018-02-26 |
| Oligonucleotide conjugated multi-functional adeno-associated viruses. | Dhruva Katrekar, Ana M Moreno, Genghao Chen, Atharv Worlikar, Prashant Mali | Scientific Reports | 2018-02-26 |
| Discovery, Biosynthesis and Stress-Related Accumulation of Dolabradiene-Derived Defenses in Maize. | Sibongile Mafu, Yezhang Ding, Katherine M Murphy, Omar Yaacoobi, J Bennett Addison, Qiang Wang, Zhouxin Shen, Steven P Briggs, Jörg Bohlmann, Gabriel Castro-Falcon, Chambers C Hughes, Mariam Betsiashvili, Alisa Huffaker, Eric A Schmelz, Philipp Zerbe | Plant Physiology | 2018-02-23 |
| Epitopes for neutralizing antibodies induced by HIV-1 envelope glycoprotein BG505 SOSIP trimers in rabbits and macaques. | P J Klasse, Thomas J Ketas, Christopher A Cottrell, Gabriel Ozorowski, Gargi Debnath, Diawoye Camara, Erik Francomano, Pavel Pugach, Rajesh P Ringe, Celia C LaBranche, Marit J van Gils, Christine A Bricault, Dan H Barouch, Shane Crotty, Guido Silvestri, Sudhir Kasturi, Bali Pulendran, Ian A Wilson, David C Montefiori, Rogier W Sanders, Andrew B Ward, John P Moore | PLoS Pathogens | 2018-02-23 |
| Induction of autophagy by PI3K/MTOR and PI3K/MTOR/BRD4 inhibitors suppresses HIV-1 replication. | Grant R Campbell, Rachel S Bruckman, Shayna D Herns, Shweta Joshi, Donald L Durden, Stephen A Spector | The Journal Of Biological Chemistry | 2018-02-23 |
| Group B Streptococcal Maternal Colonization and Neonatal Disease: Molecular Mechanisms and Preventative Approaches. | Kathryn A Patras, Victor Nizet | Frontiers In Pediatrics | 2018-02-22 |
| Clove Bud Oil Modulates Pathogenicity Phenotypes of the Opportunistic Human Pathogen Pseudomonas aeruginosa. | Jayalekshmi Haripriyan, Athira Omanakuttan, Nitasha D Menon, Muralidharan Vanuopadath, Sudarslal Sadasivan Nair, Ross Corriden, Bipin G Nair, Victor Nizet, Geetha B Kumar | Scientific Reports | 2018-02-21 |
| Feeding and grazing impact by the bloom-forming euglenophyte Eutreptiella eupharyngea on marine eubacteria and cyanobacteria. | Yeong Du Yoo, Kyeong Ah Seong, Hyung Seop Kim, Hae Jin Jeong, Eun Young Yoon, Jaeyeon Park, Jong Im Kim, Woongghi Shin, Brian Palenik | Harmful Algae | 2018-02-21 |
| Bacterial community changes in an industrial algae production system. | Scott P Fulbright, Adam Robbins-Pianka, Donna Berg-Lyons, Rob Knight, Kenneth F Reardon, Stephen T Chisholm | Algal Research | 2018-02-21 |
| Gut microbiota, fatty liver disease, and hepatocellular carcinoma. | Huikuan Chu, Brandon Williams, Bernd Schnabl | Liver Research | 2018-02-21 |
| Fluvirucin B6, a new macrolactam isolated from a marine-derived actinomycete of the genus Nocardiopsis. | Alain S Leutou, Inho Yang, Tu Cam Le, Dongyup Hahn, Kyung-Min Lim, Sang-Jip Nam, William Fenical | The Journal Of Antibiotics | 2018-02-21 |
| Membrane-Derived Vesicles Promote Bacterial Virulence and Confer Protective Immunity in Murine Infection Models. | Fatemeh Askarian, John D Lapek, Mitesh Dongre, Chih-Ming Tsai, Monika Kumaraswamy, Armin Kousha, J Andrés Valderrama, Judith A Ludviksen, Jorunn P Cavanagh, Satoshi Uchiyama, Tom E Mollnes, David J Gonzalez, Sun N Wai, Victor Nizet, Mona Johannessen | Frontiers In Microbiology | 2018-02-20 |
| Autophagy and innate immunity: Insights from invertebrate model organisms. | Cheng-Ju Kuo, Malene Hansen, Emily Troemel | Autophagy | 2018-02-17 |
| Identification of the S-transferase like superfamily bacillithiol transferases encoded by Bacillus subtilis. | Varahenage R Perera, John D Lapek, Gerald L Newton, David J Gonzalez, Kit Pogliano | PloS One | 2018-02-16 |
| Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models. | Aeriel Belk, Zhenjiang Zech Xu, David O Carter, Aaron Lynne, Sibyl Bucheli, Rob Knight, Jessica L Metcalf | Genes | 2018-02-16 |
| Coprolites reveal ecological interactions lost with the extinction of New Zealand birds. | Alexander P Boast, Laura S Weyrich, Jamie R Wood, Jessica L Metcalf, Rob Knight, Alan Cooper | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2018-02-15 |
| Broad-Spectrum Neutralization of Pore-Forming Toxins with Human Erythrocyte Membrane-Coated Nanosponges. | Yijie Chen, Mengchun Chen, Yue Zhang, Joo Hee Lee, Tamara Escajadillo, Hua Gong, Ronnie H Fang, Weiwei Gao, Victor Nizet, Liangfang Zhang | Advanced Healthcare Materials | 2018-02-13 |
| Structure, function, and mechanism of the core circadian clock in cyanobacteria. | Jeffrey A Swan, Susan S Golden, Andy LiWang, Carrie L Partch | The Journal Of Biological Chemistry | 2018-02-13 |
| G.I. pros: Antimicrobial defense in the gastrointestinal tract. | Lawton K Chung, Manuela Raffatellu | Seminars In Cell & Developmental Biology | 2018-02-12 |
| Spatiotemporally regulated proteolysis to dissect the role of vegetative proteins during Bacillus subtilis sporulation: cell-specific requirement of σ and σ. | Eammon P Riley, Aude Trinquier, Madeline L Reilly, Marine Durchon, Varahenage R Perera, Kit Pogliano, Javier Lopez-Garrido | Molecular Microbiology | 2018-02-12 |
| Expanding our Understanding of the Role of the Microbiome in Health and Disease. | Rob Knight | Archives Of Medical Research | 2018-02-09 |
| The Ontogeny of a Neutrophil: Mechanisms of Granulopoiesis and Homeostasis. | Shelley M Lawrence, Ross Corriden, Victor Nizet | Microbiology And Molecular Biology Reviews : MMBR | 2018-02-07 |
| Leaf-Encapsulated Vaccines: Agroinfiltration and Transient Expression of the Antigen B in Radish Leaves. | Pei-Feng Liu, Yanhan Wang, Robert G Ulrich, Christopher W Simmons, Jean S VanderGheynst, Richard L Gallo, Chun-Ming Huang | Journal Of Immunology Research | 2018-02-07 |
| Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice. | Gil Sharon, Nikki Jamie Cruz, Dae-Wook Kang, Michael J Gandal, Bo Wang, Young-Mo Kim, Erika M Zink, Cameron P Casey, Bryn C Taylor, Christianne J Lane, Lisa M Bramer, Nancy G Isern, David W Hoyt, Cecilia Noecker, Michael J Sweredoski, Annie Moradian, Elhanan Borenstein, Janet K Jansson, Rob Knight, Thomas O Metz, Carlos Lois, Daniel H Geschwind, Rosa Krajmalnik-Brown, Sarkis K Mazmanian | Cell | 2018-02-06 |
| Genome-scale analysis of Methicillin-resistant Staphylococcus aureus USA300 reveals a tradeoff between pathogenesis and drug resistance. | Donghui Choe, Richard Szubin, Samira Dahesh, Suhyung Cho, Victor Nizet, Bernhard Palsson, Byung-Kwan Cho | Scientific Reports | 2018-02-02 |
| Overview and systematic review of studies of microbiome in schizophrenia and bipolar disorder. | Tanya T Nguyen, Tomasz Kosciolek, Lisa T Eyler, Rob Knight, Dilip V Jeste | Journal Of Psychiatric Research | 2018-01-31 |
| Tundrenone: An Atypical Secondary Metabolite from Bacteria with Highly Restricted Primary Metabolism. | Aaron W Puri, Emily Mevers, Timothy R Ramadhar, Daniel Petras, Darren Liu, Jörn Piel, Pieter C Dorrestein, E Peter Greenberg, Mary E Lidstrom, Jon Clardy | Journal Of The American Chemical Society | 2018-01-30 |
| Virulence Role of the GlcNAc Side Chain of the Lancefield Cell Wall Carbohydrate Antigen in Non-M1-Serotype Group A . | Anna Henningham, Mark R Davies, Satoshi Uchiyama, Nina M van Sorge, Sean Lund, Kelsey T Chen, Mark J Walker, Jason N Cole, Victor Nizet | MBio | 2018-01-30 |
| Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction. | Youlian Zhou, Zhenjiang Zech Xu, Yan He, Yunsheng Yang, Le Liu, Qianyun Lin, Yuqiang Nie, Mingsong Li, Fachao Zhi, Side Liu, Amnon Amir, Antonio González, Anupriya Tripathi, Minhu Chen, Gary D Wu, Rob Knight, Hongwei Zhou, Ye Chen | MSystems | 2018-01-30 |
| Modeling the multi-scale mechanisms of macromolecular resource allocation. | Laurence Yang, James T Yurkovich, Zachary A King, Bernhard O Palsson | Current Opinion In Microbiology | 2018-01-24 |
| Biosynthesis of Orthogonal Molecules Using Ferredoxin and Ferredoxin-NADP Reductase Systems Enables Genetically Encoded PhyB Optogenetics. | Phillip Kyriakakis, Marianne Catanho, Nicole Hoffner, Walter Thavarajah, Vincent J Hu, Syh-Shiuan Chao, Athena Hsu, Vivian Pham, Ladan Naghavian, Lara E Dozier, Gentry N Patrick, Todd P Coleman | ACS Synthetic Biology | 2018-01-24 |
| The human naive B cell repertoire contains distinct subclasses for a germline-targeting HIV-1 vaccine immunogen. | Colin Havenar-Daughton, Anita Sarkar, Daniel W Kulp, Laura Toy, Xiaozhen Hu, Isaiah Deresa, Oleksandr Kalyuzhniy, Kirti Kaushik, Amit A Upadhyay, Sergey Menis, Elise Landais, Liwei Cao, Jolene K Diedrich, Sonu Kumar, Torben Schiffner, Samantha M Reiss, Grégory Seumois, John R Yates, James C Paulson, Steven E Bosinger, Ian A Wilson, William R Schief, Shane Crotty | Science Translational Medicine | 2018-01-23 |
| Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018. | Lorenzo Galluzzi, Ilio Vitale, Stuart A Aaronson, John M Abrams, Dieter Adam, Patrizia Agostinis, Emad S Alnemri, Lucia Altucci, Ivano Amelio, David W Andrews, Margherita Annicchiarico-Petruzzelli, Alexey V Antonov, Eli Arama, Eric H Baehrecke, Nickolai A Barlev, Nicolas G Bazan, Francesca Bernassola, Mathieu J M Bertrand, Katiuscia Bianchi, Mikhail V Blagosklonny, Klas Blomgren, Christoph Borner, Patricia Boya, Catherine Brenner, Michelangelo Campanella, Eleonora Candi, Didac Carmona-Gutierrez, Francesco Cecconi, Francis K-M Chan, Navdeep S Chandel, Emily H Cheng, Jerry E Chipuk, John A Cidlowski, Aaron Ciechanover, Gerald M Cohen, Marcus Conrad, Juan R Cubillos-Ruiz, Peter E Czabotar, Vincenzo D'Angiolella, Ted M Dawson, Valina L Dawson, Vincenzo De Laurenzi, Ruggero De Maria, Klaus-Michael Debatin, Ralph J DeBerardinis, Mohanish Deshmukh, Nicola Di Daniele, Francesco Di Virgilio, Vishva M Dixit, Scott J Dixon, Colin S Duckett, Brian D Dynlacht, Wafik S El-Deiry, John W Elrod, Gian Maria Fimia, Simone Fulda, Ana J García-Sáez, Abhishek D Garg, Carmen Garrido, Evripidis Gavathiotis, Pierre Golstein, Eyal Gottlieb, Douglas R Green, Lloyd A Greene, Hinrich Gronemeyer, Atan Gross, Gyorgy Hajnoczky, J Marie Hardwick, Isaac S Harris, Michael O Hengartner, Claudio Hetz, Hidenori Ichijo, Marja Jäättelä, Bertrand Joseph, Philipp J Jost, Philippe P Juin, William J Kaiser, Michael Karin, Thomas Kaufmann, Oliver Kepp, Adi Kimchi, Richard N Kitsis, Daniel J Klionsky, Richard A Knight, Sharad Kumar, Sam W Lee, John J Lemasters, Beth Levine, Andreas Linkermann, Stuart A Lipton, Richard A Lockshin, Carlos López-Otín, Scott W Lowe, Tom Luedde, Enrico Lugli, Marion MacFarlane, Frank Madeo, Michal Malewicz, Walter Malorni, Gwenola Manic, Jean-Christophe Marine, Seamus J Martin, Jean-Claude Martinou, Jan Paul Medema, Patrick Mehlen, Pascal Meier, Sonia Melino, Edward A Miao, Jeffery D Molkentin, Ute M Moll, Cristina Muñoz-Pinedo, Shigekazu Nagata, Gabriel Nuñez, Andrew Oberst, Moshe Oren, Michael Overholtzer, Michele Pagano, Theocharis Panaretakis, Manolis Pasparakis, Josef M Penninger, David M Pereira, Shazib Pervaiz, Marcus E Peter, Mauro Piacentini, Paolo Pinton, Jochen H M Prehn, Hamsa Puthalakath, Gabriel A Rabinovich, Markus Rehm, Rosario Rizzuto, Cecilia M P Rodrigues, David C Rubinsztein, Thomas Rudel, Kevin M Ryan, Emre Sayan, Luca Scorrano, Feng Shao, Yufang Shi, John Silke, Hans-Uwe Simon, Antonella Sistigu, Brent R Stockwell, Andreas Strasser, Gyorgy Szabadkai, Stephen W G Tait, Daolin Tang, Nektarios Tavernarakis, Andrew Thorburn, Yoshihide Tsujimoto, Boris Turk, Tom Vanden Berghe, Peter Vandenabeele, Matthew G Vander Heiden, Andreas Villunger, Herbert W Virgin, Karen H Vousden, Domagoj Vucic, Erwin F Wagner, Henning Walczak, David Wallach, Ying Wang, James A Wells, Will Wood, Junying Yuan, Zahra Zakeri, Boris Zhivotovsky, Laurence Zitvogel, Gerry Melino, Guido Kroemer | Cell Death And Differentiation | 2018-01-23 |
| Innate Immune Interactions between and Host Neutrophils. | Janet Z Liu, Syed R Ali, Ethan Bier, Victor Nizet | Frontiers In Cellular And Infection Microbiology | 2018-01-22 |
| Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra. | Alexey Gurevich, Alla Mikheenko, Alexander Shlemov, Anton Korobeynikov, Hosein Mohimani, Pavel A Pevzner | Nature Microbiology | 2018-01-22 |
| NF-κB, inflammation, immunity and cancer: coming of age. | Koji Taniguchi, Michael Karin | Nature Reviews. Immunology | 2018-01-22 |
| Intestinal dysbiosis and permeability: the yin and yang in alcohol dependence and alcoholic liver disease. | Peter Stärkel, Sophie Leclercq, Philippe de Timary, Bernd Schnabl | Clinical Science (London, England : 1979) | 2018-01-19 |
| Genetic risk, dysbiosis, and treatment stratification using host genome and gut microbiome in inflammatory bowel disease. | Ahmed Moustafa, Weizhong Li, Ericka L Anderson, Emily H M Wong, Parambir S Dulai, William J Sandborn, William Biggs, Shibu Yooseph, Marcus B Jones, J Craig Venter, Karen E Nelson, John T Chang, Amalio Telenti, Brigid S Boland | Clinical And Translational Gastroenterology | 2018-01-18 |
| Hybrid biomembrane-functionalized nanorobots for concurrent removal of pathogenic bacteria and toxins. | Berta Esteban-Fernández de Ávila, Pavimol Angsantikul, Doris E Ramírez-Herrera, Fernando Soto, Hazhir Teymourian, Diana Dehaini, Yijie Chen, Liangfang Zhang, Joseph Wang | Science Robotics | 2018-01-18 |
| HIV, Hepatitis B Virus, and Hepatitis C Virus Prevalence Among High-Risk Populations in South India. | Thongadi Ramesh Dinesha, Jayaseelan Boobalan, Sathasivam Sivamalar, Sunil S Solomon, Selvamuthu Poongulali, Ambrose Pradeep, Kailapuri G Murugavel, Pachamuthu Balakrishnan, Davey M Smith, Shanmugam Saravanan | AIDS Research And Human Retroviruses | 2018-01-17 |
| Size, Composition, and Evolution of HIV DNA Populations during Early Antiretroviral Therapy and Intensification with Maraviroc. | Antoine Chaillon, Sara Gianella, Steven M Lada, Josué Perez-Santiago, Parris Jordan, Caroline Ignacio, Maile Karris, Douglas D Richman, Sanjay R Mehta, Susan J Little, Joel O Wertheim, Davey M Smith | Journal Of Virology | 2018-01-17 |
| Bastimolide B, an Antimalarial 24-Membered Marine Macrolide Possessing a tert-Butyl Group. | Chang-Lun Shao, Xiao-Feng Mou, Fei Cao, Carmenza Spadafora, Evgenia Glukhov, Lena Gerwick, Chang-Yun Wang, William H Gerwick | Journal Of Natural Products | 2018-01-12 |
| Listeria monocytogenes endocarditis: case report, review of the literature, and laboratory evaluation of potential novel antibiotic synergies. | Monika Kumaraswamy, Carter Do, George Sakoulas, Poochit Nonejuie, Guan Woei Tseng, Helen King, Joshua Fierer, Joe Pogliano, Victor Nizet | International Journal Of Antimicrobial Agents | 2018-01-11 |
| MHC class I loaded ligands from breast cancer cell lines: A potential HLA-I-typed antigen collection. | Dmitri V Rozanov, Nikita D Rozanov, Kami E Chiotti, Ashok Reddy, Phillip A Wilmarth, Larry L David, Seung W Cha, Sunghee Woo, Pavel Pevzner, Vineet Bafna, Gregory G Burrows, Juha K Rantala, Trevor Levin, Pavana Anur, Katie Johnson-Camacho, Shaadi Tabatabaei, Daniel J Munson, Tullia C Bruno, Jill E Slansky, John W Kappler, Naoto Hirano, Sebastian Boegel, Bernard A Fox, Colt Egelston, Diana L Simons, Grecia Jimenez, Peter P Lee, Joe W Gray, Paul T Spellman | Journal Of Proteomics | 2018-01-10 |
| Biosynthesis of the Antibiotic Bicyclomycin in Soil and Pathogenic Bacteria. | Jonathan R Chekan, Bradley S Moore | Biochemistry | 2018-01-09 |
| Exploration of the Germline Genome of the Ciliate through Single-Cell Omics (Transcriptomics and Genomics). | Xyrus X Maurer-Alcalá, Rob Knight, Laura A Katz | MBio | 2018-01-09 |
| The SLC22 Transporter Family: A Paradigm for the Impact of Drug Transporters on Metabolic Pathways, Signaling, and Disease. | Sanjay K Nigam | Annual Review Of Pharmacology And Toxicology | 2018-01-09 |
| Metabolic capability and in situ activity of microorganisms in an oil reservoir. | Yi-Fan Liu, Daniela Domingos Galzerani, Serge Maurice Mbadinga, Livia S Zaramela, Ji-Dong Gu, Bo-Zhong Mu, Karsten Zengler | Microbiome | 2018-01-05 |
| Tauroursodeoxycholic acid inhibits intestinal inflammation and barrier disruption in mice with non-alcoholic fatty liver disease. | Weijun Wang, Jinfang Zhao, Wenfang Gui, Dan Sun, Haijiang Dai, Li Xiao, Huikuan Chu, Fan Du, Qingjing Zhu, Bernd Schnabl, Kai Huang, Ling Yang, Xiaohua Hou | British Journal Of Pharmacology | 2018-01-03 |
| Homospermidine Lipids: A Compound Class Specifically Formed during Fruiting Body Formation of Myxococcus xanthus DK1622. | Michael Hoffmann, David Auerbach, Fabian Panter, Thomas Hoffmann, Pieter C Dorrestein, Rolf Müller | ACS Chemical Biology | 2017-12-28 |
| CYP51 is an essential drug target for the treatment of primary amoebic meningoencephalitis (PAM). | Anjan Debnath, Claudia M Calvet, Gareth Jennings, Wenxu Zhou, Alexander Aksenov, Madeline R Luth, Ruben Abagyan, W David Nes, James H McKerrow, Larissa M Podust | PLoS Neglected Tropical Diseases | 2017-12-28 |
| The human microbiome in evolution. | Emily R Davenport, Jon G Sanders, Se Jin Song, Katherine R Amato, Andrew G Clark, Rob Knight | BMC Biology | 2017-12-27 |
| Precursor Frequency and Affinity Determine B Cell Competitive Fitness in Germinal Centers, Tested with Germline-Targeting HIV Vaccine Immunogens. | Robert K Abbott, Jeong Hyun Lee, Sergey Menis, Patrick Skog, Meghan Rossi, Takayuki Ota, Daniel W Kulp, Deepika Bhullar, Oleksandr Kalyuzhniy, Colin Havenar-Daughton, William R Schief, David Nemazee, Shane Crotty | Immunity | 2017-12-26 |
| Urine trouble: should we think differently about UTI? | Travis K Price, Evann E Hilt, Tanaka J Dune, Elizabeth R Mueller, Alan J Wolfe, Linda Brubaker | International Urogynecology Journal | 2017-12-26 |
| Chorioamnionitis, IL-17A, and fetal origins of neurologic disease. | Shelley M Lawrence, James L Wynn | American Journal Of Reproductive Immunology (New York, N.Y. : 1989) | 2017-12-22 |
| 3D molecular cartography using LC-MS facilitated by Optimus and 'ili software. | Ivan Protsyuk, Alexey V Melnik, Louis-Felix Nothias, Luca Rappez, Prasad Phapale, Alexander A Aksenov, Amina Bouslimani, Sergey Ryazanov, Pieter C Dorrestein, Theodore Alexandrov | Nature Protocols | 2017-12-21 |
| Fungal and herbivore elicitation of the novel maize sesquiterpenoid, zealexin A4, is attenuated by elevated CO. | Shawn A Christensen, Alisa Huffaker, James Sims, Charles T Hunter, Anna Block, Martha M Vaughan, Denis Willett, Maritza Romero, J Erik Mylroie, W Paul Williams, Eric A Schmelz | Planta | 2017-12-21 |
| Unravelling the specificity and mechanism of sialic acid recognition by the gut symbiont Ruminococcus gnavus. | C David Owen, Louise E Tailford, Serena Monaco, Tanja Šuligoj, Laura Vaux, Romane Lallement, Zahra Khedri, Hai Yu, Karine Lecointe, John Walshaw, Sandra Tribolo, Marc Horrex, Andrew Bell, Xi Chen, Gary L Taylor, Ajit Varki, Jesus Angulo, Nathalie Juge | Nature Communications | 2017-12-19 |
| Fungal-induced protein hyperacetylation in maize identified by acetylome profiling. | Justin W Walley, Zhouxin Shen, Maxwell R McReynolds, Eric A Schmelz, Steven P Briggs | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2017-12-19 |
| Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in . | Christopher P Long, Jacqueline E Gonzalez, Adam M Feist, Bernhard O Palsson, Maciek R Antoniewicz | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2017-12-18 |
| Synergy between Ursolic and Oleanolic Acids from Vitellaria paradoxa Leaf Extract and β-Lactams against Methicillin-Resistant Staphylococcus aureus: In Vitro and In Vivo Activity and Underlying Mechanisms. | Lucy Catteau, Nathalie T Reichmann, Joshua Olson, Mariana G Pinho, Victor Nizet, Françoise Van Bambeke, Joëlle Quetin-Leclercq | Molecules (Basel, Switzerland) | 2017-12-16 |
| Temporal variation in HIV-specific IgG subclass antibodies during acute infection differentiates spontaneous controllers from chronic progressors. | Saheli Sadanand, Jishnu Das, Amy W Chung, Matthew K Schoen, Sophie Lane, Todd J Suscovich, Hendrik Streeck, Davey M Smith, Susan J Little, Douglas A Lauffenburger, Douglas D Richman, Galit Alter | AIDS (London, England) | 2017-12-15 |
| IL-17 in neonatal health and disease. | Shelley M Lawrence, Jessica Lauren Ruoss, James L Wynn | American Journal Of Reproductive Immunology (New York, N.Y. : 1989) | 2017-12-15 |
| Mucosal Mesenchymal Cells: Secondary Barrier and Peripheral Educator for the Gut Immune System. | Yosuke Kurashima, Daiki Yamamoto, Sean Nelson, Satoshi Uematsu, Peter B Ernst, Toshinori Nakayama, Hiroshi Kiyono | Frontiers In Immunology | 2017-12-13 |
| Skin Commensal Malassezia globosa Secreted Protease Attenuates Staphylococcus aureus Biofilm Formation. | Hao Li, Bee Na Goh, Wooi Keong Teh, Zhenze Jiang, Joleen Pei Zhen Goh, Amelia Goh, Guangxi Wu, Shawn S Hoon, Manfred Raida, Andrea Camattari, Liang Yang, Anthony J O'Donoghue, Thomas L Dawson | The Journal Of Investigative Dermatology | 2017-12-12 |
| Publisher Correction: Gastric acid suppression promotes alcoholic liver disease by inducing overgrowth of intestinal Enterococcus. | Cristina Llorente, Peter Jepsen, Tatsuo Inamine, Lirui Wang, Sena Bluemel, Hui J Wang, Rohit Loomba, Jasmohan S Bajaj, Mitchell L Schubert, Masoumeh Sikaroodi, Patrick M Gillevet, Jun Xu, Tatiana Kisseleva, Samuel B Ho, Jessica DePew, Xin Du, Henrik T Sørensen, Hendrik Vilstrup, Karen E Nelson, David A Brenner, Derrick E Fouts, Bernd Schnabl | Nature Communications | 2017-12-12 |
| Conformational Switch Regulates the DNA Cytosine Deaminase Activity of Human APOBEC3B. | Ke Shi, Özlem Demir, Michael A Carpenter, Jeff Wagner, Kayo Kurahashi, Reuben S Harris, Rommie E Amaro, Hideki Aihara | Scientific Reports | 2017-12-12 |
| Group A Streptococcus encounters with host macrophages. | J Andrés Valderrama, Victor Nizet | Future Microbiology | 2017-12-11 |
| Comparative transcriptomics as a guide to natural product discovery and biosynthetic gene cluster functionality. | Gregory C A Amos, Takayoshi Awakawa, Robert N Tuttle, Anne-Catrin Letzel, Min Cheol Kim, Yuta Kudo, William Fenical, Bradley Moore, Paul R Jensen | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2017-12-11 |
| Runx3 programs CD8 T cell residency in non-lymphoid tissues and tumours. | J Justin Milner, Clara Toma, Bingfei Yu, Kai Zhang, Kyla Omilusik, Anthony T Phan, Dapeng Wang, Adam J Getzler, Toan Nguyen, Shane Crotty, Wei Wang, Matthew E Pipkin, Ananda W Goldrath | Nature | 2017-12-06 |
| Social behaviour and gut microbiota in red-bellied lemurs (Eulemur rubriventer): In search of the role of immunity in the evolution of sociality. | Aura Raulo, Lasse Ruokolainen, Avery Lane, Katherine Amato, Rob Knight, Steven Leigh, Rebecca Stumpf, Bryan White, Karen E Nelson, Andrea L Baden, Stacey R Tecot | The Journal Of Animal Ecology | 2017-12-05 |
| Comparison of lipopolysaccharides composition of two different strains of Helicobacter pylori. | Kristy Leker, Ivonne Lozano-Pope, Keya Bandyopadhyay, Biswa P Choudhury, Marygorret Obonyo | BMC Microbiology | 2017-12-04 |
| Multimodal Treatment of Rhinocerebral Mucormycosis in a Pediatric Patient With Relapsed Pre-B Acute Lymphoblastic Leukemia. | Zephyr D Dworsky, John S Bradley, Matthew T Brigger, Alice L Pong, Dennis John Kuo | The Pediatric Infectious Disease Journal | 2017-12-01 |
| Antibiotic-Induced Changes to the Host Metabolic Environment Inhibit Drug Efficacy and Alter Immune Function. | Jason H Yang, Prerna Bhargava, Douglas McCloskey, Ning Mao, Bernhard O Palsson, James J Collins | Cell Host & Microbe | 2017-11-30 |
| Isolation and structure elucidation of lipopeptide antibiotic taromycin B from the activated taromycin biosynthetic gene cluster. | Kirk A Reynolds, Hanna Luhavaya, Jie Li, Samira Dahesh, Victor Nizet, Kazuya Yamanaka, Bradley S Moore | The Journal Of Antibiotics | 2017-11-29 |
| Biomimetic Platelet-Camouflaged Nanorobots for Binding and Isolation of Biological Threats. | Jinxing Li, Pavimol Angsantikul, Wenjuan Liu, Berta Esteban-Fernández de Ávila, Xiaocong Chang, Elodie Sandraz, Yuyan Liang, Siyu Zhu, Yue Zhang, Chuanrui Chen, Weiwei Gao, Liangfang Zhang, Joseph Wang | Advanced Materials (Deerfield Beach, Fla.) | 2017-11-28 |
| Omics-based natural product discovery and the lexicon of genome mining. | Henrique Machado, Robert N Tuttle, Paul R Jensen | Current Opinion In Microbiology | 2017-11-23 |
| The Transcription Factor Runx3 Establishes Chromatin Accessibility of cis-Regulatory Landscapes that Drive Memory Cytotoxic T Lymphocyte Formation. | Dapeng Wang, Huitian Diao, Adam J Getzler, Walter Rogal, Megan A Frederick, Justin Milner, Bingfei Yu, Shane Crotty, Ananda W Goldrath, Matthew E Pipkin | Immunity | 2017-11-22 |
| Structure-based design of native-like HIV-1 envelope trimers to silence non-neutralizing epitopes and eliminate CD4 binding. | Daniel W Kulp, Jon M Steichen, Matthias Pauthner, Xiaozhen Hu, Torben Schiffner, Alessia Liguori, Christopher A Cottrell, Colin Havenar-Daughton, Gabriel Ozorowski, Erik Georgeson, Oleksandr Kalyuzhniy, Jordan R Willis, Michael Kubitz, Yumiko Adachi, Samantha M Reiss, Mia Shin, Natalia de Val, Andrew B Ward, Shane Crotty, Dennis R Burton, William R Schief | Nature Communications | 2017-11-21 |
| Discrete False-Discovery Rate Improves Identification of Differentially Abundant Microbes. | Lingjing Jiang, Amnon Amir, James T Morton, Ruth Heller, Ery Arias-Castro, Rob Knight | MSystems | 2017-11-21 |
| Higher Anti-Cytomegalovirus Immunoglobulin G Concentrations Are Associated With Worse Neurocognitive Performance During Suppressive Antiretroviral Therapy. | Scott Letendre, Ajay Bharti, Ignacio Perez-Valero, Barbara Hanson, Donald Franklin, Steven Paul Woods, Sara Gianella, Michelli Faria de Oliveira, Robert K Heaton, Igor Grant, Alan L Landay, Nell Lurain, | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2017-11-20 |
| Check your microbiota when taking the drug. | Katrin Hochrath, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2017-11-15 |
| A Mononuclear Iron-Dependent Methyltransferase Catalyzes Initial Steps in Assembly of the Apratoxin A Polyketide Starter Unit. | Meredith A Skiba, Andrew P Sikkema, Nathan A Moss, Collin L Tran, Rebecca M Sturgis, Lena Gerwick, William H Gerwick, David H Sherman, Janet L Smith | ACS Chemical Biology | 2017-11-14 |
| Evaluating the impact of domestication and captivity on the horse gut microbiome. | Jessica L Metcalf, Se Jin Song, James T Morton, Sophie Weiss, Andaine Seguin-Orlando, Frédéric Joly, Claudia Feh, Pierre Taberlet, Eric Coissac, Amnon Amir, Eske Willerslev, Rob Knight, Valerie McKenzie, Ludovic Orlando | Scientific Reports | 2017-11-14 |
| A Red Algal Bourbonane Sesquiterpene Synthase Defined by Microgram-Scale NMR-Coupled Crystalline Sponge X-ray Diffraction Analysis. | Roland D Kersten, Shoukou Lee, Daishi Fujita, Tomáš Pluskal, Susan Kram, Jennifer E Smith, Takahiro Iwai, Joseph P Noel, Makoto Fujita, Jing-Ke Weng | Journal Of The American Chemical Society | 2017-11-14 |
| Staphylococcus aureus: Master Manipulator of the Skin. | Michael R Williams, Teruaki Nakatsuji, Richard L Gallo | Cell Host & Microbe | 2017-11-10 |
| Structure-function characterization of three human antibodies targeting the vaccinia virus adhesion molecule D8. | Michael H Matho, Andrew Schlossman, Iuliia M Gilchuk, Greg Miller, Zbigniew Mikulski, Matthias Hupfer, Jing Wang, Aruna Bitra, Xiangzhi Meng, Yan Xiang, Tom Kaever, Tzanko Doukov, Klaus Ley, Shane Crotty, Bjoern Peters, Linda C Hsieh-Wilson, James E Crowe, Dirk M Zajonc | The Journal Of Biological Chemistry | 2017-11-09 |
| Mitogen-activated protein kinase (MAPK) dynamics determine cell fate in the yeast mating response. | Yang Li, Julie Roberts, Zohreh AkhavanAghdam, Nan Hao | The Journal Of Biological Chemistry | 2017-11-09 |
| Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity. | Shabnam Shalapour, Xue-Jia Lin, Ingmar N Bastian, John Brain, Alastair D Burt, Alexander A Aksenov, Alison F Vrbanac, Weihua Li, Andres Perkins, Takaji Matsutani, Zhenyu Zhong, Debanjan Dhar, Jose A Navas-Molina, Jun Xu, Rohit Loomba, Michael Downes, Ruth T Yu, Ronald M Evans, Pieter C Dorrestein, Rob Knight, Christopher Benner, Quentin M Anstee, Michael Karin | Nature | 2017-11-08 |
| The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota. | Christian Milani, Sabrina Duranti, Francesca Bottacini, Eoghan Casey, Francesca Turroni, Jennifer Mahony, Clara Belzer, Susana Delgado Palacio, Silvia Arboleya Montes, Leonardo Mancabelli, Gabriele Andrea Lugli, Juan Miguel Rodriguez, Lars Bode, Willem de Vos, Miguel Gueimonde, Abelardo Margolles, Douwe van Sinderen, Marco Ventura | Microbiology And Molecular Biology Reviews : MMBR | 2017-11-08 |
| Guidelines for Genome-Scale Analysis of Biological Rhythms. | Michael E Hughes, Katherine C Abruzzi, Ravi Allada, Ron Anafi, Alaaddin Bulak Arpat, Gad Asher, Pierre Baldi, Charissa de Bekker, Deborah Bell-Pedersen, Justin Blau, Steve Brown, M Fernanda Ceriani, Zheng Chen, Joanna C Chiu, Juergen Cox, Alexander M Crowell, Jason P DeBruyne, Derk-Jan Dijk, Luciano DiTacchio, Francis J Doyle, Giles E Duffield, Jay C Dunlap, Kristin Eckel-Mahan, Karyn A Esser, Garret A FitzGerald, Daniel B Forger, Lauren J Francey, Ying-Hui Fu, Frédéric Gachon, David Gatfield, Paul de Goede, Susan S Golden, Carla Green, John Harer, Stacey Harmer, Jeff Haspel, Michael H Hastings, Hanspeter Herzel, Erik D Herzog, Christy Hoffmann, Christian Hong, Jacob J Hughey, Jennifer M Hurley, Horacio O de la Iglesia, Carl Johnson, Steve A Kay, Nobuya Koike, Karl Kornacker, Achim Kramer, Katja Lamia, Tanya Leise, Scott A Lewis, Jiajia Li, Xiaodong Li, Andrew C Liu, Jennifer J Loros, Tami A Martino, Jerome S Menet, Martha Merrow, Andrew J Millar, Todd Mockler, Felix Naef, Emi Nagoshi, Michael N Nitabach, Maria Olmedo, Dmitri A Nusinow, Louis J Ptáček, David Rand, Akhilesh B Reddy, Maria S Robles, Till Roenneberg, Michael Rosbash, Marc D Ruben, Samuel S C Rund, Aziz Sancar, Paolo Sassone-Corsi, Amita Sehgal, Scott Sherrill-Mix, Debra J Skene, Kai-Florian Storch, Joseph S Takahashi, Hiroki R Ueda, Han Wang, Charles Weitz, Pål O Westermark, Herman Wijnen, Ying Xu, Gang Wu, Seung-Hee Yoo, Michael Young, Eric Erquan Zhang, Tomasz Zielinski, John B Hogenesch | Journal Of Biological Rhythms | 2017-11-03 |
| An Intracellular Pathogen Response Pathway Promotes Proteostasis in C. elegans. | Kirthi C Reddy, Tal Dror, Jessica N Sowa, Johan Panek, Kevin Chen, Efrem S Lim, David Wang, Emily R Troemel | Current Biology : CB | 2017-11-02 |
| A communal catalogue reveals Earth's multiscale microbial diversity. | Luke R Thompson, Jon G Sanders, Daniel McDonald, Amnon Amir, Joshua Ladau, Kenneth J Locey, Robert J Prill, Anupriya Tripathi, Sean M Gibbons, Gail Ackermann, Jose A Navas-Molina, Stefan Janssen, Evguenia Kopylova, Yoshiki Vázquez-Baeza, Antonio González, James T Morton, Siavash Mirarab, Zhenjiang Zech Xu, Lingjing Jiang, Mohamed F Haroon, Jad Kanbar, Qiyun Zhu, Se Jin Song, Tomasz Kosciolek, Nicholas A Bokulich, Joshua Lefler, Colin J Brislawn, Gregory Humphrey, Sarah M Owens, Jarrad Hampton-Marcell, Donna Berg-Lyons, Valerie McKenzie, Noah Fierer, Jed A Fuhrman, Aaron Clauset, Rick L Stevens, Ashley Shade, Katherine S Pollard, Kelly D Goodwin, Janet K Jansson, Jack A Gilbert, Rob Knight, | Nature | 2017-11-01 |
| Inter-species population dynamics enhance microbial horizontal gene transfer and spread of antibiotic resistance. | Robert M Cooper, Lev Tsimring, Jeff Hasty | ELife | 2017-11-01 |
| MHC-I Genotype Restricts the Oncogenic Mutational Landscape. | Rachel Marty, Saghar Kaabinejadian, David Rossell, Michael J Slifker, Joris van de Haar, Hatice Billur Engin, Nicola de Prisco, Trey Ideker, William H Hildebrand, Joan Font-Burgada, Hannah Carter | Cell | 2017-10-26 |
| Urinary Incontinence in Women: A Review. | Emily S Lukacz, Yahir Santiago-Lastra, Michael E Albo, Linda Brubaker | JAMA | 2017-10-26 |
| Immunoglobulin A and liver diseases. | Tatsuo Inamine, Bernd Schnabl | Journal Of Gastroenterology | 2017-10-26 |
| Gut microbiome of mothers delivering prematurely shows reduced diversity and lower relative abundance of Bifidobacterium and Streptococcus. | Cecilie Dahl, Maggie Stanislawski, Nina Iszatt, Siddhartha Mandal, Catherine Lozupone, Jose C Clemente, Rob Knight, Hein Stigum, Merete Eggesbø | PloS One | 2017-10-25 |
| Guiding longitudinal sampling in IBD cohorts. | Yoshiki Vázquez-Baeza, Antonio Gonzalez, Zhenjiang Zech Xu, Alex Washburne, Hans H Herfarth, R Balfour Sartor, Rob Knight | Gut | 2017-10-21 |
| SCH79797 improves outcomes in experimental bacterial pneumonia by boosting neutrophil killing and direct antibiotic activity. | Naveen Gupta, Roland Liu, Stephanie Shin, Ranjeet Sinha, Joseph Pogliano, Kit Pogliano, John H Griffin, Victor Nizet, Ross Corriden | The Journal Of Antimicrobial Chemotherapy | 2017-10-19 |
| Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung. | Neha Garg, Mingxun Wang, Embriette Hyde, Ricardo R da Silva, Alexey V Melnik, Ivan Protsyuk, Amina Bouslimani, Yan Wei Lim, Richard Wong, Greg Humphrey, Gail Ackermann, Timothy Spivey, Sharon S Brouha, Nuno Bandeira, Grace Y Lin, Forest Rohwer, Douglas J Conrad, Theodore Alexandrov, Rob Knight, Pieter C Dorrestein | Cell Host & Microbe | 2017-10-19 |
| Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome. | Tanja V Maier, Marianna Lucio, Lang Ho Lee, Nathan C VerBerkmoes, Colin J Brislawn, Jörg Bernhardt, Regina Lamendella, Jason E McDermott, Nathalie Bergeron, Silke S Heinzmann, James T Morton, Antonio González, Gail Ackermann, Rob Knight, Katharina Riedel, Ronald M Krauss, Philippe Schmitt-Kopplin, Janet K Jansson | MBio | 2017-10-17 |
| Staphylococcus aureus modulation of innate immune responses through Toll-like (TLR), (NOD)-like (NLR) and C-type lectin (CLR) receptors. | Fatemeh Askarian, Theresa Wagner, Mona Johannessen, Victor Nizet | FEMS Microbiology Reviews | 2017-10-16 |
| Gastric acid suppression promotes alcoholic liver disease by inducing overgrowth of intestinal Enterococcus. | Cristina Llorente, Peter Jepsen, Tatsuo Inamine, Lirui Wang, Sena Bluemel, Hui J Wang, Rohit Loomba, Jasmohan S Bajaj, Mitchell L Schubert, Masoumeh Sikaroodi, Patrick M Gillevet, Jun Xu, Tatiana Kisseleva, Samuel B Ho, Jessica DePew, Xin Du, Henrik T Sørensen, Hendrik Vilstrup, Karen E Nelson, David A Brenner, Derrick E Fouts, Bernd Schnabl | Nature Communications | 2017-10-16 |
| ELMO1 Regulates Autophagy Induction and Bacterial Clearance During Enteric Infection. | Arup Sarkar, Courtney Tindle, Rama F Pranadinata, Sharon Reed, Lars Eckmann, Thaddeus S Stappenbeck, Peter B Ernst, Soumita Das | The Journal Of Infectious Diseases | 2017-10-14 |
| No Substantial Evidence for Sexual Transmission of Minority HIV Drug Resistance Mutations in Men Who Have Sex with Men. | Antoine Chaillon, Masato Nakazawa, Joel O Wertheim, Susan J Little, Davey M Smith, Sanjay R Mehta, Sara Gianella | Journal Of Virology | 2017-10-13 |
| ViFi: accurate detection of viral integration and mRNA fusion reveals indiscriminate and unregulated transcription in proximal genomic regions in cervical cancer. | Nam-Phuong D Nguyen, Viraj Deshpande, Jens Luebeck, Paul S Mischel, Vineet Bafna | Nucleic Acids Research | 2017-10-13 |
| Global shortage of neonatal and paediatric antibiotic trials: rapid review. | Georgina Thompson, Charlotte I Barker, Laura Folgori, Julia A Bielicki, John S Bradley, Irja Lutsar, Mike Sharland | BMJ Open | 2017-10-13 |
| Meta-mass shift chemical profiling of metabolomes from coral reefs. | Aaron C Hartmann, Daniel Petras, Robert A Quinn, Ivan Protsyuk, Frederick I Archer, Emma Ransome, Gareth J Williams, Barbara A Bailey, Mark J A Vermeij, Theodore Alexandrov, Pieter C Dorrestein, Forest L Rohwer | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2017-10-12 |
| Total Synthesis and Biological Assessment of Novel Albicidins Discovered by Mass Spectrometric Networking. | Leonard von Eckardstein, Daniel Petras, Tam Dang, Stéphane Cociancich, Souhir Sabri, Stefan Grätz, Dennis Kerwat, Maria Seidel, Alexander Pesic, Pieter C Dorrestein, Monique Royer, John B Weston, Roderich D Süssmuth | Chemistry (Weinheim An Der Bergstrasse, Germany) | 2017-10-12 |
| Destabilizing mutations encode nongenetic variation that drives evolutionary innovation. | Katherine L Petrie, Nathan D Palmer, Daniel T Johnson, Sarah J Medina, Stephanie J Yan, Victor Li, Alita R Burmeister, Justin R Meyer | Science (New York, N.Y.) | 2017-10-12 |
| iML1515, a knowledgebase that computes Escherichia coli traits. | Jonathan M Monk, Colton J Lloyd, Elizabeth Brunk, Nathan Mih, Anand Sastry, Zachary King, Rikiya Takeuchi, Wataru Nomura, Zhen Zhang, Hirotada Mori, Adam M Feist, Bernhard O Palsson | Nature Biotechnology | 2017-10-12 |
| An NF-κB-microRNA regulatory network tunes macrophage inflammatory responses. | Mati Mann, Arnav Mehta, Jimmy L Zhao, Kevin Lee, Georgi K Marinov, Yvette Garcia-Flores, Li-Fan Lu, Alexander Y Rudensky, David Baltimore | Nature Communications | 2017-10-11 |
| Thermosensitivity of growth is determined by chaperone-mediated proteome reallocation. | Ke Chen, Ye Gao, Nathan Mih, Edward J O'Brien, Laurence Yang, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2017-10-10 |
| Perinatal Bisphenol A Exposure Induces Chronic Inflammation in Rabbit Offspring via Modulation of Gut Bacteria and Their Metabolites. | Lavanya Reddivari, D N Rao Veeramachaneni, William A Walters, Catherine Lozupone, Jennifer Palmer, M K Kurundu Hewage, Rohil Bhatnagar, Amnon Amir, Mary J Kennett, Rob Knight, Jairam K P Vanamala | MSystems | 2017-10-10 |
| Evolution of host adaptation in the Salmonella typhoid toxin. | Xiang Gao, Lingquan Deng, Gabrielle Stack, Hai Yu, Xi Chen, Yuko Naito-Matsui, Ajit Varki, Jorge E Galán | Nature Microbiology | 2017-10-09 |
| Dramatic Differences in Gut Bacterial Densities Correlate with Diet and Habitat in Rainforest Ants. | Jon G Sanders, Piotr Lukasik, Megan E Frederickson, Jacob A Russell, Ryuichi Koga, Rob Knight, Naomi E Pierce | Integrative And Comparative Biology | 2017-10-07 |
| The Effects of Captivity on the Mammalian Gut Microbiome. | Valerie J McKenzie, Se Jin Song, Frédéric Delsuc, Tiffany L Prest, Angela M Oliverio, Timothy M Korpita, Alexandra Alexiev, Katherine R Amato, Jessica L Metcalf, Martin Kowalewski, Nico L Avenant, Andres Link, Anthony Di Fiore, Andaine Seguin-Orlando, Claudia Feh, Ludovic Orlando, Joseph R Mendelson, Jon Sanders, Rob Knight | Integrative And Comparative Biology | 2017-10-07 |
| Multigenerational silencing dynamics control cell aging. | Yang Li, Meng Jin, Richard O'Laughlin, Philip Bittihn, Lev S Tsimring, Lorraine Pillus, Jeff Hasty, Nan Hao | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2017-10-03 |
| Impacts of the Human Gut Microbiome on Therapeutics. | Yoshiki Vázquez-Baeza, Chris Callewaert, Justine Debelius, Embriette Hyde, Clarisse Marotz, James T Morton, Austin Swafford, Alison Vrbanac, Pieter C Dorrestein, Rob Knight | Annual Review Of Pharmacology And Toxicology | 2017-10-02 |
| Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium. | Rashmi Sinha, Galeb Abu-Ali, Emily Vogtmann, Anthony A Fodor, Boyu Ren, Amnon Amir, Emma Schwager, Jonathan Crabtree, Siyuan Ma, , Christian C Abnet, Rob Knight, Owen White, Curtis Huttenhower | Nature Biotechnology | 2017-10-02 |
| Commercial hybrids and mutant genotypes reveal complex protective roles for inducible terpenoid defenses in maize. | Shawn A Christensen, James Sims, Martha M Vaughan, Charles Hunter, Anna Block, Denis Willett, Hans T Alborn, Alisa Huffaker, Eric A Schmelz | Journal Of Experimental Botany | 2017-09-30 |
| Gut Microbial Diversity in Women With Polycystic Ovary Syndrome Correlates With Hyperandrogenism. | Pedro J Torres, Martyna Siakowska, Beata Banaszewska, Leszek Pawelczyk, Antoni J Duleba, Scott T Kelley, Varykina G Thackray | The Journal Of Clinical Endocrinology And Metabolism | 2017-09-28 |
| Asymmetric Alkene and Arene Halofunctionalization Reactions in Meroterpenoid Biosynthesis. | Bradley S Moore | Synlett : Accounts And Rapid Communications In Synthetic Organic Chemistry | 2017-09-27 |
| Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring. | Christopher P Long, Jacqueline E Gonzalez, Adam M Feist, Bernhard O Palsson, Maciek R Antoniewicz | Metabolic Engineering | 2017-09-23 |
| Summary of the 2016 Alcohol and Immunology Research Interest Group (AIRIG) meeting. | Lisbeth A Boule, Cynthia Ju, Marisela Agudelo, Tiyash Parira, Abigail Cannon, Booker Davis, Jonathan Eby, Gail Cresci, Derrick R Samuelson, Pradeep Shukla, Waddah A Alrefai, Suhas Sureshchandra, Subhash C Pandey, Bernd Schnabl, Brenda J Curtis, Todd A Wyatt, Mashkoor A Choudhry, Elizabeth J Kovacs | Alcohol (Fayetteville, N.Y.) | 2017-09-23 |
| Mass Spectrometry-Based Chemical Cartography of a Cardiac Parasitic Infection. | Laura-Isobel McCall, James T Morton, Jean A Bernatchez, Jair Lage de Siqueira-Neto, Rob Knight, Pieter C Dorrestein, James H McKerrow | Analytical Chemistry | 2017-09-22 |
| Development and Use of Personalized Bacteriophage-Based Therapeutic Cocktails To Treat a Patient with a Disseminated Resistant Acinetobacter baumannii Infection. | Robert T Schooley, Biswajit Biswas, Jason J Gill, Adriana Hernandez-Morales, Jacob Lancaster, Lauren Lessor, Jeremy J Barr, Sharon L Reed, Forest Rohwer, Sean Benler, Anca M Segall, Randy Taplitz, Davey M Smith, Kim Kerr, Monika Kumaraswamy, Victor Nizet, Leo Lin, Melanie D McCauley, Steffanie A Strathdee, Constance A Benson, Robert K Pope, Brian M Leroux, Andrew C Picel, Alfred J Mateczun, Katherine E Cilwa, James M Regeimbal, Luis A Estrella, David M Wolfe, Matthew S Henry, Javier Quinones, Scott Salka, Kimberly A Bishop-Lilly, Ry Young, Theron Hamilton | Antimicrobial Agents And Chemotherapy | 2017-09-22 |
| Expanding Single Particle Mass Spectrometer Analyses for the Identification of Microbe Signatures in Sea Spray Aerosol. | Camille M Sultana, Hashim Al-Mashat, Kimberly A Prather | Analytical Chemistry | 2017-09-22 |
| Modeling neuro-immune interactions during Zika virus infection. | Pinar Mesci, Angela Macia, Christopher N LaRock, Leon Tejwani, Isabella R Fernandes, Nicole A Suarez, Paolo M de A Zanotto, Patricia C B Beltrão-Braga, Victor Nizet, Alysson R Muotri | Human Molecular Genetics | 2017-09-21 |
| Denitrification potential of the eastern oyster microbiome using a 16S rRNA gene based metabolic inference approach. | Ann Arfken, Bongkeun Song, Jeff S Bowman, Michael Piehler | PloS One | 2017-09-21 |
| International chicken trade and increased risk for introducing or reintroducing highly pathogenic avian influenza A (H5N1) to uninfected countries. | Jennifer M Radin, Richard A Shaffer, Suzanne P Lindsay, Maria Rosario G Araneta, Rema Raman, James H Fowler | Infectious Disease Modelling | 2017-09-21 |
| Extensive orf infection in a toddler with associated id reaction. | Ellen S Haddock, Carol E Cheng, John S Bradley, Christopher H Hsu, Hui Zhao, Whitni B Davidson, Victoria R Barrio | Pediatric Dermatology | 2017-09-21 |
| Selinene Volatiles Are Essential Precursors for Maize Defense Promoting Fungal Pathogen Resistance. | Yezhang Ding, Alisa Huffaker, Tobias G Köllner, Philipp Weckwerth, Christelle A M Robert, Joseph L Spencer, Alexander E Lipka, Eric A Schmelz | Plant Physiology | 2017-09-20 |
| Strains, functions and dynamics in the expanded Human Microbiome Project. | Jason Lloyd-Price, Anup Mahurkar, Gholamali Rahnavard, Jonathan Crabtree, Joshua Orvis, A Brantley Hall, Arthur Brady, Heather H Creasy, Carrie McCracken, Michelle G Giglio, Daniel McDonald, Eric A Franzosa, Rob Knight, Owen White, Curtis Huttenhower | Nature | 2017-09-20 |
| Elucidation of complexity and prediction of interactions in microbial communities. | Cristal Zuñiga, Livia Zaramela, Karsten Zengler | Microbial Biotechnology | 2017-09-19 |
| Environmentally Friendly Procedure Based on Supercritical Fluid Chromatography and Tandem Mass Spectrometry Molecular Networking for the Discovery of Potent Antiviral Compounds from Euphorbia semiperfoliata. | Louis-Félix Nothias, Stéphanie Boutet-Mercey, Xavier Cachet, Erick De La Torre, Laurent Laboureur, Jean-François Gallard, Pascal Retailleau, Alain Brunelle, Pieter C Dorrestein, Jean Costa, Luis M Bedoya, Fanny Roussi, Pieter Leyssen, José Alcami, Julien Paolini, Marc Litaudon, David Touboul | Journal Of Natural Products | 2017-09-19 |
| miR-25/93 mediates hypoxia-induced immunosuppression by repressing cGAS. | Min-Zu Wu, Wei-Chung Cheng, Su-Feng Chen, Shin Nieh, Carolyn O'Connor, Chia-Lin Liu, Wen-Wei Tsai, Cheng-Jang Wu, Lorena Martin, Yaoh-Shiang Lin, Kou-Juey Wu, Li-Fan Lu, Juan Carlos Izpisua Belmonte | Nature Cell Biology | 2017-09-18 |
| Rapid, actionable diagnosis of urban epidemic leptospirosis using a pathogenic Leptospira lipL32-based real-time PCR assay. | Irina N Riediger, Robyn A Stoddard, Guilherme S Ribeiro, Sueli M Nakatani, Suzana D R Moreira, Irene Skraba, Alexander W Biondo, Mitermayer G Reis, Alex R Hoffmaster, Joseph M Vinetz, Albert I Ko, Elsio A Wunder | PLoS Neglected Tropical Diseases | 2017-09-15 |
| MicroRNA in Immune Regulation. | Cheng-Jang Wu, Li-Fan Lu | Current Topics In Microbiology And Immunology | 2017-09-14 |
| Pharmacokinetics of single-dose ceftaroline fosamil in children with cystic fibrosis. | Jennifer Le, John S Bradley, Sara Hingtgen, Shannon Skochko, Nanette Black, Ronald N Jones, Meerana Lim, Edmund V Capparelli | Pediatric Pulmonology | 2017-09-14 |
| Erratum to: Diet Versus Phylogeny: a Comparison of Gut Microbiota in Captive Colobine Monkey Species. | Vanessa L Hale, Chia L Tan, Kefeng Niu, Yeqin Yang, Rob Knight, Qikun Zhang, Duoying Cui, Katherine R Amato | Microbial Ecology | 2017-09-13 |
| Conditional Gene-Targeting in Mice: Problems and Solutions. | Burkhard Becher, Ari Waisman, Li-Fan Lu | Immunity | 2017-09-12 |
| Systematic Gene-to-Phenotype Arrays: A High-Throughput Technique for Molecular Phenotyping. | Philipp A Jaeger, Lilia Ornelas, Cameron McElfresh, Lily R Wong, Randolph Y Hampton, Trey Ideker | Molecular Cell | 2017-09-11 |
| Gut bacteria from multiple sclerosis patients modulate human T cells and exacerbate symptoms in mouse models. | Egle Cekanaviciute, Bryan B Yoo, Tessel F Runia, Justine W Debelius, Sneha Singh, Charlotte A Nelson, Rachel Kanner, Yadira Bencosme, Yun Kyung Lee, Stephen L Hauser, Elizabeth Crabtree-Hartman, Ilana Katz Sand, Mar Gacias, Yunjiao Zhu, Patrizia Casaccia, Bruce A C Cree, Rob Knight, Sarkis K Mazmanian, Sergio E Baranzini | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2017-09-11 |
| Urinary Symptoms and Their Associations With Urinary Tract Infections in Urogynecologic Patients. | Tanaka J Dune, Travis K Price, Evann E Hilt, Krystal J Thomas-White, Stephanie Kliethermes, Cynthia Brincat, Linda Brubaker, Paul Schreckenberger, Alan J Wolfe, Elizabeth R Mueller | Obstetrics And Gynecology | 2017-09-09 |
| Diversity-generating retroelements: natural variation, classification and evolution inferred from a large-scale genomic survey. | Li Wu, Mari Gingery, Michael Abebe, Diego Arambula, Elizabeth Czornyj, Sumit Handa, Hamza Khan, Minghsun Liu, Mechthild Pohlschroder, Kharissa L Shaw, Amy Du, Huatao Guo, Partho Ghosh, Jeff F Miller, Steven Zimmerly | Nucleic Acids Research | 2017-09-09 |
| International Consensus Statement on Allergy and Rhinology: Allergic Rhinitis. | Sarah K Wise, Sandra Y Lin, Elina Toskala, Richard R Orlandi, Cezmi A Akdis, Jeremiah A Alt, Antoine Azar, Fuad M Baroody, Claus Bachert, G Walter Canonica, Thomas Chacko, Cemal Cingi, Giorgio Ciprandi, Jacquelynne Corey, Linda S Cox, Peter Socrates Creticos, Adnan Custovic, Cecelia Damask, Adam DeConde, John M DelGaudio, Charles S Ebert, Jean Anderson Eloy, Carrie E Flanagan, Wytske J Fokkens, Christine Franzese, Jan Gosepath, Ashleigh Halderman, Robert G Hamilton, Hans Jürgen Hoffman, Jens M Hohlfeld, Steven M Houser, Peter H Hwang, Cristoforo Incorvaia, Deborah Jarvis, Ayesha N Khalid, Maritta Kilpeläinen, Todd T Kingdom, Helene Krouse, Desiree Larenas-Linnemann, Adrienne M Laury, Stella E Lee, Joshua M Levy, Amber U Luong, Bradley F Marple, Edward D McCoul, K Christopher McMains, Erik Melén, James W Mims, Gianna Moscato, Joaquim Mullol, Harold S Nelson, Monica Patadia, Ruby Pawankar, Oliver Pfaar, Michael P Platt, William Reisacher, Carmen Rondón, Luke Rudmik, Matthew Ryan, Joaquin Sastre, Rodney J Schlosser, Russell A Settipane, Hemant P Sharma, Aziz Sheikh, Timothy L Smith, Pongsakorn Tantilipikorn, Jody R Tversky, Maria C Veling, De Yun Wang, Marit Westman, Magnus Wickman, Mark Zacharek | International Forum Of Allergy & Rhinology | 2017-09-07 |
| Differences in Neurocognitive Impairment Among HIV-Infected Latinos in the United States. | María J Marquine, Anne Heaton, Neco Johnson, Monica Rivera-Mindt, Mariana Cherner, Cinnamon Bloss, Todd Hulgan, Anya Umlauf, David J Moore, Pariya Fazeli, Susan Morgello, Donald Franklin, Scott Letendre, Ron Ellis, Ann C Collier, Christina M Marra, David B Clifford, Benjamin B Gelman, Ned Sacktor, David Simpson, J Allen McCutchan, Igor Grant, Robert K Heaton | Journal Of The International Neuropsychological Society : JINS | 2017-09-06 |
| Randomized controlled trial on the impact of early-life intervention with bifidobacteria on the healthy infant fecal microbiota and metabolome. | Monika Bazanella, Tanja V Maier, Thomas Clavel, Ilias Lagkouvardos, Marianna Lucio, Maria X Maldonado-Gòmez, Chloe Autran, Jens Walter, Lars Bode, Philippe Schmitt-Kopplin, Dirk Haller | The American Journal Of Clinical Nutrition | 2017-09-06 |
| Distribution of O-Acetylated Sialic Acids among Target Host Tissues for Influenza Virus. | Brian R Wasik, Karen N Barnard, Robert J Ossiboff, Zahra Khedri, Kurtis H Feng, Hai Yu, Xi Chen, Daniel R Perez, Ajit Varki, Colin R Parrish | MSphere | 2017-09-06 |
| Evidence that Human Skin Microbiome Dysbiosis Promotes Atopic Dermatitis. | Michael R Williams, Richard L Gallo | The Journal Of Investigative Dermatology | 2017-09-06 |
| Broad-Host-Range Expression Reveals Native and Host Regulatory Elements That Influence Heterologous Antibiotic Production in Gram-Negative Bacteria. | Jia Jia Zhang, Xiaoyu Tang, Michelle Zhang, Darlene Nguyen, Bradley S Moore | MBio | 2017-09-05 |
| Global transcriptional regulatory network for robustly connects gene expression to transcription factor activities. | Xin Fang, Anand Sastry, Nathan Mih, Donghyuk Kim, Justin Tan, James T Yurkovich, Colton J Lloyd, Ye Gao, Laurence Yang, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2017-09-05 |
| Enzymatic C-H Oxidation-Amidation Cascade in the Production of Natural and Unnatural Thiotetronate Antibiotics with Potentiated Bioactivity. | Jie Li, Xiaoyu Tang, Takayoshi Awakawa, Bradley S Moore | Angewandte Chemie (International Ed. In English) | 2017-09-01 |
| Variation, Indispensability, and Masking in the M protein. | Partho Ghosh | Trends In Microbiology | 2017-08-31 |
| The Microbiome and the Liver. | Bernd Schnabl | Gastroenterology & Hepatology | 2017-08-29 |
| The Mla pathway is critical for Pseudomonas aeruginosa resistance to outer membrane permeabilization and host innate immune clearance. | Jason Munguia, Doris L LaRock, Hannah Tsunemoto, Joshua Olson, Ingrid Cornax, Joseph Pogliano, Victor Nizet | Journal Of Molecular Medicine (Berlin, Germany) | 2017-08-26 |
| Influenza NS1 directly modulates Hedgehog signaling during infection. | Margery G Smelkinson, Annabel Guichard, John R Teijaro, Meghana Malur, Maria Eugenia Loureiro, Prashant Jain, Sundar Ganesan, Elina I Zúñiga, Robert M Krug, Michael B Oldstone, Ethan Bier | PLoS Pathogens | 2017-08-24 |
| Genetic influences on the human oral microbiome. | Brittany A Demmitt, Robin P Corley, Brooke M Huibregtse, Matthew C Keller, John K Hewitt, Matthew B McQueen, Rob Knight, Ivy McDermott, Kenneth S Krauter | BMC Genomics | 2017-08-24 |
| Plant elicitor peptides promote plant defences against nematodes in soybean. | Min Woo Lee, Alisa Huffaker, Devany Crippen, Robert T Robbins, Fiona L Goggin | Molecular Plant Pathology | 2017-08-22 |
| Tamm-Horsfall glycoprotein engages human Siglec-9 to modulate neutrophil activation in the urinary tract. | Kathryn A Patras, Alison Coady, Joshua Olson, Syed Raza Ali, Satish P RamachandraRao, Satish Kumar, Ajit Varki, Victor Nizet | Immunology And Cell Biology | 2017-08-22 |
| Rapid and Scalable Preparation of Bacterial Lysates for Cell-Free Gene Expression. | Andriy Didovyk, Taishi Tonooka, Lev Tsimring, Jeff Hasty | ACS Synthetic Biology | 2017-08-21 |
| NOT Gate Genetic Circuits to Control Gene Expression in Cyanobacteria. | Arnaud Taton, Amy T Ma, Mizuho Ota, Susan S Golden, James W Golden | ACS Synthetic Biology | 2017-08-21 |
| Dysregulated Microbial Fermentation of Soluble Fiber Induces Cholestatic Liver Cancer. | Vishal Singh, Beng San Yeoh, Benoit Chassaing, Xia Xiao, Piu Saha, Rodrigo Aguilera Olvera, John D Lapek, Limin Zhang, Wei-Bei Wang, Sijie Hao, Michael D Flythe, David J Gonzalez, Patrice D Cani, Jose R Conejo-Garcia, Na Xiong, Mary J Kennett, Bina Joe, Andrew D Patterson, Andrew T Gewirtz, Matam Vijay-Kumar | Cell | 2017-08-20 |
| Mechanisms to Evade the Phagocyte Respiratory Burst Arose by Convergent Evolution in Typhoidal Salmonella Serovars. | Hirotaka Hiyoshi, Tamding Wangdi, Gabriel Lock, Cheng Saechao, Manuela Raffatellu, Brian A Cobb, Andreas J Bäumler | Cell Reports | 2017-08-19 |
| Arylthiazole antibiotics targeting intracellular methicillin-resistant Staphylococcus aureus (MRSA) that interfere with bacterial cell wall synthesis. | Islam Eid, Mohamed M Elsebaei, Haroon Mohammad, Mohamed Hagras, Christine E Peters, Youssef A Hegazy, Bruce Cooper, Joe Pogliano, Kit Pogliano, Hamada S Abulkhair, Mohamed N Seleem, Abdelrahman S Mayhoub | European Journal Of Medicinal Chemistry | 2017-08-18 |
| Genetic variation in adaptability and pleiotropy in budding yeast. | Elizabeth R Jerison, Sergey Kryazhimskiy, James Kameron Mitchell, Joshua S Bloom, Leonid Kruglyak, Michael M Desai | ELife | 2017-08-17 |
| Micromotor-enabled active drug delivery for in vivo treatment of stomach infection. | Berta Esteban-Fernández de Ávila, Pavimol Angsantikul, Jinxing Li, Miguel Angel Lopez-Ramirez, Doris E Ramírez-Herrera, Soracha Thamphiwatana, Chuanrui Chen, Jorge Delezuk, Richard Samakapiruk, Valentin Ramez, Marygorret Obonyo, Liangfang Zhang, Joseph Wang | Nature Communications | 2017-08-16 |
| Function-related replacement of bacterial siderophore pathways. | Hilke Bruns, Max Crüsemann, Anne-Catrin Letzel, Mohammad Alanjary, James O McInerney, Paul R Jensen, Stefan Schulz, Bradley S Moore, Nadine Ziemert | The ISME Journal | 2017-08-15 |
| Genomic insights into specialized metabolism in the marine actinomycete Salinispora. | Anne-Catrin Letzel, Jing Li, Gregory C A Amos, Natalie Millán-Aguiñaga, Joape Ginigini, Usama R Abdelmohsen, Susana P Gaudêncio, Nadine Ziemert, Bradley S Moore, Paul R Jensen | Environmental Microbiology | 2017-08-14 |
| Personalized Risk Index for Neurocognitive Decline Among People With Well-Controlled HIV Infection. | Tracy Yuen, Marie-Josée Brouillette, Lesley K Fellows, Ronald J Ellis, Scott Letendre, Robert Heaton, Nancy Mayo, | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2017-08-11 |
| Intrasubtype B HIV-1 Superinfection Correlates with Delayed Neutralizing Antibody Response. | Gabriel A Wagner, Elise Landais, Gemma Caballero, Pham Phung, Sergei L Kosakovsky Pond, Pascal Poignard, Douglas D Richman, Susan J Little, Davey M Smith | Journal Of Virology | 2017-08-10 |
| Bacteriological profiling of diphenylureas as a novel class of antibiotics against methicillin-resistant Staphylococcus aureus. | Haroon Mohammad, Waleed Younis, Hany G Ezzat, Christine E Peters, Ahmed AbdelKhalek, Bruce Cooper, Kit Pogliano, Joe Pogliano, Abdelrahman S Mayhoub, Mohamed N Seleem | PloS One | 2017-08-10 |
| Leukotriene B-receptor-1 mediated host response shapes gut microbiota and controls colon tumor progression. | Venkatakrishna R Jala, Paramahamsa Maturu, Sobha R Bodduluri, Elangovan Krishnan, Steven Mathis, Krishnaprasad Subbarao, Min Wang, Alfred B Jenson, Mary L Proctor, Eric C Rouchka, Rob Knight, Bodduluri Haribabu | Oncoimmunology | 2017-08-10 |
| Discovery and Synthesis of Caracolamide A, an Ion Channel Modulating Dichlorovinylidene Containing Phenethylamide from a Panamanian Marine Cyanobacterium cf. Symploca Species. | C Benjamin Naman, Jehad Almaliti, Lorene Armstrong, Eduardo J Caro-Díaz, Marsha L Pierce, Evgenia Glukhov, Amanda Fenner, Carmenza Spadafora, Hosana M Debonsi, Pieter C Dorrestein, Thomas F Murray, William H Gerwick | Journal Of Natural Products | 2017-08-07 |
| Group A streptococcal M protein activates the NLRP3 inflammasome. | J Andrés Valderrama, Angelica M Riestra, Nina J Gao, Christopher N LaRock, Naveen Gupta, Syed Raza Ali, Hal M Hoffman, Partho Ghosh, Victor Nizet | Nature Microbiology | 2017-08-07 |
| Edible Electrochemistry: Food Materials Based Electrochemical Sensors. | Jayoung Kim, Itthipon Jeerapan, Bianca Ciui, Martin C Hartel, Aida Martin, Joseph Wang | Advanced Healthcare Materials | 2017-08-07 |
| Recurrent infection progressively disables host protection against intestinal inflammation. | Won Ho Yang, Douglas M Heithoff, Peter V Aziz, Markus Sperandio, Victor Nizet, Michael J Mahan, Jamey D Marth | Science (New York, N.Y.) | 2017-08-04 |
| Saccharomonopyrones A-C, New α-Pyrones from a Marine Sediment-Derived Bacterium Saccharomonospora sp. CNQ-490. | Chae-Yoon Yim, Tu Cam Le, Tae Gu Lee, Inho Yang, Hansol Choi, Jusung Lee, Kyung-Yun Kang, Jin Sil Lee, Kyung-Min Lim, Sung-Tae Yee, Heonjoong Kang, Sang-Jip Nam, William Fenical | Marine Drugs | 2017-08-03 |
| Telavancin for refractory MRSA bacteraemia in intermittent haemodialysis recipients. | Nicholas S Britt, Samad Tirmizi, David J Ritchie, Jeffrey E Topal, Dayna McManus, Victor Nizet, Ed Casabar, George Sakoulas | The Journal Of Antimicrobial Chemotherapy | 2017-08-02 |
| Intravenous Zanamivir in Hospitalized Patients With Influenza. | John S Bradley, Jeffrey L Blumer, José R Romero, Marian G Michaels, Flor M Munoz, David W Kimberlin, Barbara Pahud, Roberta L DeBiasi, Go Yamamoto, Grace Roberts, Mohammad Hossain, Denise Shortino, Phillip J Yates, Bryan Adams, Amanda Peppercorn | Pediatrics | 2017-08-02 |
| The drug transporter OAT3 (SLC22A8) and endogenous metabolite communication via the gut-liver-kidney axis. | Kevin T Bush, Wei Wu, Christina Lun, Sanjay K Nigam | The Journal Of Biological Chemistry | 2017-08-01 |
| PUMA gene delivery to synoviocytes reduces inflammation and degeneration of arthritic joints. | Saw-See Hong, Hubert Marotte, Guillaume Courbon, Gary S Firestein, Pierre Boulanger, Pierre Miossec | Nature Communications | 2017-07-27 |
| Are humans prone to autoimmunity? Implications from evolutionary changes in hominin sialic acid biology. | Ajit Varki | Journal Of Autoimmunity | 2017-07-26 |
| Development of a Potent Inhibitor of the Plasmodium Proteasome with Reduced Mammalian Toxicity. | Gregory M LaMonte, Jehad Almaliti, Betsaida Bibo-Verdugo, Lena Keller, Bing Yu Zou, Jennifer Yang, Yevgeniya Antonova-Koch, Pamela Orjuela-Sanchez, Colleen A Boyle, Edgar Vigil, Lawrence Wang, Gregory M Goldgof, Lena Gerwick, Anthony J O'Donoghue, Elizabeth A Winzeler, William H Gerwick, Sabine Ottilie | Journal Of Medicinal Chemistry | 2017-07-25 |
| Bacterial density rather than diversity correlates with hatching success across different avian species. | Juan Manuel Peralta-Sánchez, Antonio Manuel Martín-Platero, Laura Wegener-Parfrey, Manuel Martínez-Bueno, Sonia Rodríguez-Ruano, José Antonio Navas-Molina, Yoshiki Vázquez-Baeza, David Martín-Gálvez, Manuel Martín-Vivaldi, Juan Diego Ibáñez-Álamo, Rob Knight, Juan José Soler | FEMS Microbiology Ecology | 2017-07-25 |
| Identification of putative unique immunogenic ZIKV and DENV1-4 peptides for diagnostic cellular based tests. | Aaron L Oom, Davey Smith, Kevan Akrami | Scientific Reports | 2017-07-24 |
| Reconstructing the regulatory circuit of cell fate determination in yeast mating response. | Bin Shao, Haiyu Yuan, Rongfei Zhang, Xuan Wang, Shuwen Zhang, Qi Ouyang, Nan Hao, Chunxiong Luo | PLoS Computational Biology | 2017-07-24 |
| Diet Versus Phylogeny: a Comparison of Gut Microbiota in Captive Colobine Monkey Species. | Vanessa L Hale, Chia L Tan, Kefeng Niu, Yeqin Yang, Rob Knight, Qikun Zhang, Duoying Cui, Katherine R Amato | Microbial Ecology | 2017-07-22 |
| Germinal center enhancement by extended antigen availability. | Kimberly M Cirelli, Shane Crotty | Current Opinion In Immunology | 2017-07-21 |
| Erratum for Linz et al., "Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes". | Alexandra M Linz, Benjamin C Crary, Ashley Shade, Sarah Owens, Jack A Gilbert, Rob Knight, Katherine D McMahon | MSphere | 2017-07-19 |
| Evolution of organismal stoichiometry in a long-term experiment with . | Caroline B Turner, Brian D Wade, Justin R Meyer, Brooke A Sommerfeld, Richard E Lenski | Royal Society Open Science | 2017-07-19 |
| Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules. | Anna Edlund, Neha Garg, Hosein Mohimani, Alexey Gurevich, Xuesong He, Wenyuan Shi, Pieter C Dorrestein, Jeffrey S McLean | MSystems | 2017-07-18 |
| A Red Blood Cell Membrane-Camouflaged Nanoparticle Counteracts Streptolysin -Mediated Virulence Phenotypes of Invasive Group A . | Tamara Escajadillo, Joshua Olson, Brian T Luk, Liangfang Zhang, Victor Nizet | Frontiers In Pharmacology | 2017-07-18 |
| Imaging mass spectrometry and MS/MS molecular networking reveals chemical interactions among cuticular bacteria and pathogenic fungi associated with fungus-growing ants. | Cristopher A Boya P, Hermógenes Fernández-Marín, Luis C Mejía, Carmenza Spadafora, Pieter C Dorrestein, Marcelino Gutiérrez | Scientific Reports | 2017-07-17 |
| Metabolic Effects of Intermittent Fasting. | Ruth E Patterson, Dorothy D Sears | Annual Review Of Nutrition | 2017-07-17 |
| Molecular inter-kingdom interactions of endophytes isolated from Lychnophora ericoides. | Andrés M Caraballo-Rodríguez, Pieter C Dorrestein, Monica T Pupo | Scientific Reports | 2017-07-14 |
| Opportunities and Challenges for Environmental Exposure Assessment in Population-Based Studies. | Chirag J Patel, Jacqueline Kerr, Duncan C Thomas, Bhramar Mukherjee, Beate Ritz, Nilanjan Chatterjee, Marta Jankowska, Juliette Madan, Margaret R Karagas, Kimberly A McAllister, Leah E Mechanic, M Daniele Fallin, Christine Ladd-Acosta, Ian A Blair, Susan L Teitelbaum, Christopher I Amos | Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology | 2017-07-14 |
| The Dfm1 Derlin Is Required for ERAD Retrotranslocation of Integral Membrane Proteins. | Sonya Neal, Philipp A Jaeger, Sascha H Duttke, Christopher Benner, Christopher K Glass, Trey Ideker, Randolph Y Hampton | Molecular Cell | 2017-07-14 |
| Impact of Public Safety Policies on Human Immunodeficiency Virus Transmission Dynamics in Tijuana, Mexico. | Sanjay R Mehta, Antoine Chaillon, Tommi L Gaines, Patricia E Gonzalez-Zuniga, Jamila K Stockman, Horatio Almanza-Reyes, Jose Roman Chavez, Alicia Vera, Karla D Wagner, Thomas L Patterson, Brianna Scott, Davey M Smith, Steffanie A Strathdee | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2017-07-13 |
| The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study. | Sian M J Hemmings, Stefanie Malan-Müller, Leigh L van den Heuvel, Brittany A Demmitt, Maggie A Stanislawski, David G Smith, Adam D Bohr, Christopher E Stamper, Embriette R Hyde, James T Morton, Clarisse A Marotz, Philip H Siebler, Maarten Braspenning, Wim Van Criekinge, Andrew J Hoisington, Lisa A Brenner, Teodor T Postolache, Matthew B McQueen, Kenneth S Krauter, Rob Knight, Soraya Seedat, Christopher A Lowry | Psychosomatic Medicine | 2017-07-13 |
| Type 4 pili are dispensable for biofilm development in the cyanobacterium Synechococcus elongatus. | Elad Nagar, Shaul Zilberman, Eleonora Sendersky, Ryan Simkovsky, Eyal Shimoni, Diana Gershtein, Moshe Herzberg, Susan S Golden, Rakefet Schwarz | Environmental Microbiology | 2017-07-13 |
| The Microbiome and Big Data. | Jose A Navas-Molina, Embriette R Hyde, Jon Sanders, Rob Knight | Current Opinion In Systems Biology | 2017-07-11 |
| Synchronized DNA cycling across a bacterial population. | Leo Baumgart, William Mather, Jeff Hasty | Nature Genetics | 2017-07-10 |
| Key Role for the Organic Anion Transporters, OAT1 and OAT3, in the in vivo Handling of Uremic Toxins and Solutes. | Wei Wu, Kevin T Bush, Sanjay K Nigam | Scientific Reports | 2017-07-10 |
| Chromosome Translocation Inflates Bacillus Forespores and Impacts Cellular Morphology. | Javier Lopez-Garrido, Nikola Ojkic, Kanika Khanna, Felix R Wagner, Elizabeth Villa, Robert G Endres, Kit Pogliano | Cell | 2017-07-07 |
| Intermittent Hypoxia and Hypercapnia Accelerate Atherosclerosis, Partially via Trimethylamine-Oxide. | Jin Xue, Dan Zhou, Orit Poulsen, Toshihiro Imamura, Yu-Hsin Hsiao, Travis H Smith, Atul Malhotra, Pieter Dorrestein, Rob Knight, Gabriel G Haddad | American Journal Of Respiratory Cell And Molecular Biology | 2017-07-06 |
| Coupling Targeted and Untargeted Mass Spectrometry for Metabolome-Microbiome-Wide Association Studies of Human Fecal Samples. | Alexey V Melnik, Ricardo R da Silva, Embriette R Hyde, Alexander A Aksenov, Fernando Vargas, Amina Bouslimani, Ivan Protsyuk, Alan K Jarmusch, Anupriya Tripathi, Theodore Alexandrov, Rob Knight, Pieter C Dorrestein | Analytical Chemistry | 2017-07-06 |
| The Accidental Orthodoxy of Drs. Mueller and Hinton. | Victor Nizet | EBioMedicine | 2017-07-04 |
| SnapShot: Electrochemical Communication in Biofilms. | Dong-Yeon D Lee, Arthur Prindle, Jintao Liu, Gürol M Süel | Cell | 2017-07-01 |
| What's Normal? Immune Profiling of Human Milk from Healthy Women Living in Different Geographical and Socioeconomic Settings. | Lorena Ruiz, Irene Espinosa-Martos, Cristina García-Carral, Susana Manzano, Michelle K McGuire, Courtney L Meehan, Mark A McGuire, Janet E Williams, James Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Linda J Kvist, Gloria E Otoo, Kimberly A Lackey, Katherine Flores, Rossina G Pareja, Lars Bode, Juan M Rodríguez | Frontiers In Immunology | 2017-06-30 |
| Enhanced biomass and oxidative stress tolerance of Synechococcus elongatus PCC 7942 overexpressing the DHAR gene from Brassica juncea. | Young-Saeng Kim, Il-Sup Kim, Joseph S Boyd, Arnaud Taton, James W Golden, Ho-Sung Yoon | Biotechnology Letters | 2017-06-30 |
| Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes. | Alexandra M Linz, Benjamin C Crary, Ashley Shade, Sarah Owens, Jack A Gilbert, Rob Knight, Katherine D McMahon | MSphere | 2017-06-28 |
| The Importance of Human Immunodeficiency Virus Research for Transgender and Gender-Nonbinary Individuals. | Sara Gianella, J Sonya Haw, Jill Blumenthal, Brooke Sullivan, Davey Smith | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2017-06-28 |
| Interaction of primary mast cells with Borrelia burgdorferi (sensu stricto): role in transmission and dissemination in C57BL/6 mice. | Quentin Bernard, Zhenping Wang, Anna Di Nardo, Nathalie Boulanger | Parasites & Vectors | 2017-06-27 |
| Extensive horizontal gene transfer in cheese-associated bacteria. | Kevin S Bonham, Benjamin E Wolfe, Rachel J Dutton | ELife | 2017-06-23 |
| Development of ELISAs for diagnosis of acute typhoid fever in Nigerian children. | Jiin Felgner, Aarti Jain, Rie Nakajima, Li Liang, Algis Jasinskas, Eduardo Gotuzzo, Joseph M Vinetz, Fabio Miyajima, Munir Pirmohamed, Fatimah Hassan-Hanga, Dominic Umoru, Binta Wudil Jibir, Safiya Gambo, Kudirat Olateju, Philip L Felgner, Stephen Obaro, D Huw Davies | PLoS Neglected Tropical Diseases | 2017-06-22 |
| The metabolic potential of the single cell genomes obtained from the Challenger Deep, Mariana Trench within the candidate superphylum Parcubacteria (OD1). | Rosa León-Zayas, Logan Peoples, Jennifer F Biddle, Sheila Podell, Mark Novotny, James Cameron, Roger S Lasken, Douglas H Bartlett | Environmental Microbiology | 2017-06-22 |
| Coupled feedback loops control the stimulus-dependent dynamics of the yeast transcription factor Msn2. | Yanfei Jiang, Zohreh AkhavanAghdam, Lev S Tsimring, Nan Hao | The Journal Of Biological Chemistry | 2017-06-21 |
| Multi-omics Analysis of Periodontal Pocket Microbial Communities Pre- and Posttreatment. | Katy J Califf, Karen Schwarzberg-Lipson, Neha Garg, Sean M Gibbons, J Gregory Caporaso, Jørgen Slots, Chloe Cohen, Pieter C Dorrestein, Scott T Kelley | MSystems | 2017-06-20 |
| Laboratory Evolution to Alternating Substrate Environments Yields Distinct Phenotypic and Genetic Adaptive Strategies. | Troy E Sandberg, Colton J Lloyd, Bernhard O Palsson, Adam M Feist | Applied And Environmental Microbiology | 2017-06-16 |
| Cathelicidin-deficient mice exhibit increased survival and upregulation of key inflammatory response genes following cecal ligation and puncture. | Patricia Severino, Suely Kubo Ariga, Hermes Vieira Barbeiro, Thais Martins de Lima, Elisangela de Paula Silva, Denise Frediani Barbeiro, Marcel Cerqueira César Machado, Victor Nizet, Fabiano Pinheiro da Silva | Journal Of Molecular Medicine (Berlin, Germany) | 2017-06-16 |
| Phylogenomic Insight into Salinispora (Bacteria, Actinobacteria) Species Designations. | Natalie Millán-Aguiñaga, Krystle L Chavarria, Juan A Ugalde, Anne-Catrin Letzel, Greg W Rouse, Paul R Jensen | Scientific Reports | 2017-06-15 |
| DNA Backbone Sulfur-Modification Expands Microbial Growth Range under Multiple Stresses by its anti-oxidation function. | Yan Yang, Guanpeng Xu, Jingdan Liang, Ying He, Lei Xiong, Hui Li, Douglas Bartlett, Zixin Deng, Zhijun Wang, Xiang Xiao | Scientific Reports | 2017-06-14 |
| Relationships Among Microbial Communities, Maternal Cells, Oligosaccharides, and Macronutrients in Human Milk. | Janet E Williams, William J Price, Bahman Shafii, Katherine M Yahvah, Lars Bode, Mark A McGuire, Michelle K McGuire | Journal Of Human Lactation : Official Journal Of International Lactation Consultant Association | 2017-06-13 |
| Foundational and Translational Research Opportunities to Improve Plant Health. | Richard Michelmore, Gitta Coaker, Rebecca Bart, Gwyn Beattie, Andrew Bent, Toby Bruce, Duncan Cameron, Jeffery Dangl, Savithramma Dinesh-Kumar, Rob Edwards, Sebastian Eves-van den Akker, Walter Gassmann, Jean T Greenberg, Linda Hanley-Bowdoin, Richard J Harrison, Jagger Harvey, Ping He, Alisa Huffaker, Scot Hulbert, Roger Innes, Jonathan D G Jones, Isgouhi Kaloshian, Sophien Kamoun, Fumiaki Katagiri, Jan Leach, Wenbo Ma, John McDowell, June Medford, Blake Meyers, Rebecca Nelson, Richard Oliver, Yiping Qi, Diane Saunders, Michael Shaw, Christine Smart, Prasanta Subudhi, Lesley Torrance, Bret Tyler, Barbara Valent, John Walsh | Molecular Plant-microbe Interactions : MPMI | 2017-06-12 |
| Quantitative Temporal Viromics of an Inducible HIV-1 Model Yields Insight to Global Host Targets and Phospho-Dynamics Associated with Protein Vpr. | John D Lapek, Mary K Lewinski, Jacob M Wozniak, John Guatelli, David J Gonzalez | Molecular & Cellular Proteomics : MCP | 2017-06-12 |
| A stabilized microbial ecosystem of self-limiting bacteria using synthetic quorum-regulated lysis. | Spencer R Scott, M Omar Din, Philip Bittihn, Liyang Xiong, Lev S Tsimring, Jeff Hasty | Nature Microbiology | 2017-06-12 |
| Reply to Wang and Chen: An ancient origin of magnetotactic bacteria. | Wei Lin, Greig A Paterson, Qiyun Zhu, Yinzhao Wang, Evguenia Kopylova, Ying Li, Rob Knight, Dennis A Bazylinski, Rixiang Zhu, Joseph L Kirschvink, Yongxin Pan | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2017-06-12 |
| Evidence for fungal and chemodenitrification based NO flux from nitrogen impacted coastal sediments. | Scott D Wankel, Wiebke Ziebis, Carolyn Buchwald, Chawalit Charoenpong, Dirk de Beer, Jane Dentinger, Zhenjiang Xu, Karsten Zengler | Nature Communications | 2017-06-05 |
| DNA extraction for streamlined metagenomics of diverse environmental samples. | Clarisse Marotz, Amnon Amir, Greg Humphrey, James Gaffney, Grant Gogul, Rob Knight | BioTechniques | 2017-06-01 |
| Significant Impacts of Increasing Aridity on the Arid Soil Microbiome. | Julia W Neilson, Katy Califf, Cesar Cardona, Audrey Copeland, Will van Treuren, Karen L Josephson, Rob Knight, Jack A Gilbert, Jay Quade, J Gregory Caporaso, Raina M Maier | MSystems | 2017-05-30 |
| Seasonal changes in phosphorus competition and allelopathy of a benthic microbial assembly facilitate prevention of cyanobacterial blooms. | Yonghong Wu, Fengwu Wang, Xi Xiao, Junzhuo Liu, Chenxi Wu, Hong Chen, Philip Kerr, Jonathan Shurin | Environmental Microbiology | 2017-05-26 |
| Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655. | Sang Woo Seo, Ye Gao, Donghyuk Kim, Richard Szubin, Jina Yang, Byung-Kwan Cho, Bernhard O Palsson | Scientific Reports | 2017-05-19 |
| Changes in microbial ecology after fecal microbiota transplantation for recurrent C. difficile infection affected by underlying inflammatory bowel disease. | Sahil Khanna, Yoshiki Vazquez-Baeza, Antonio González, Sophie Weiss, Bradley Schmidt, David A Muñiz-Pedrogo, John F Rainey, Patricia Kammer, Heidi Nelson, Michael Sadowsky, Alexander Khoruts, Stefan L Farrugia, Rob Knight, Darrell S Pardi, Purna C Kashyap | Microbiome | 2017-05-15 |
| An Elegan(t) Screen for Drug-Microbe Interactions. | Alison Vrbanac, Justine W Debelius, Lingjing Jiang, James T Morton, Pieter Dorrestein, Rob Knight | Cell Host & Microbe | 2017-05-12 |
| Lodopyridones B and C from a marine sediment-derived bacterium Saccharomonospora sp. | Tu Cam Le, Chae-Yoon Yim, Songhee Park, Nikita Katila, Inho Yang, Myoung Chong Song, Yeo Joon Yoon, Dong-Young Choi, Hyukjae Choi, Sang-Jip Nam, William Fenical | Bioorganic & Medicinal Chemistry Letters | 2017-05-12 |
| Minimization of the Thiolactomycin Biosynthetic Pathway Reveals that the Cytochrome P450 Enzyme TlmF Is Required for Five-Membered Thiolactone Ring Formation. | Xiaoyu Tang, Jie Li, Bradley S Moore | Chembiochem : A European Journal Of Chemical Biology | 2017-05-11 |
| A Thiazole Orange Derivative Targeting the Bacterial Protein FtsZ Shows Potent Antibacterial Activity. | Ning Sun, Yu-Jing Lu, Fung-Yi Chan, Ruo-Lan Du, Yuan-Yuan Zheng, Kun Zhang, Lok-Yan So, Ruben Abagyan, Chao Zhuo, Yun-Chung Leung, Kwok-Yin Wong | Frontiers In Microbiology | 2017-05-11 |
| Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae. | Tal Luzzatto-Knaan, Neha Garg, Mingxun Wang, Evgenia Glukhov, Yao Peng, Gail Ackermann, Amnon Amir, Brendan M Duggan, Sergey Ryazanov, Lena Gerwick, Rob Knight, Theodore Alexandrov, Nuno Bandeira, William H Gerwick, Pieter C Dorrestein | ELife | 2017-05-11 |
| Metabolic Phenotypes of Response to Vaccination in Humans. | Shuzhao Li, Nicole L Sullivan, Nadine Rouphael, Tianwei Yu, Sophia Banton, Mohan S Maddur, Megan McCausland, Christopher Chiu, Jennifer Canniff, Sheri Dubey, Ken Liu, ViLinh Tran, Thomas Hagan, Sai Duraisingham, Andreas Wieland, Aneesh K Mehta, Jennifer A Whitaker, Shankar Subramaniam, Dean P Jones, Alessandro Sette, Kalpit Vora, Adriana Weinberg, Mark J Mulligan, Helder I Nakaya, Myron Levin, Rafi Ahmed, Bali Pulendran | Cell | 2017-05-11 |
| Active Interaction Mapping as a tool to elucidate hierarchical functions of biological processes. | Jean-Claude Farré, Michael Kramer, Trey Ideker, Suresh Subramani | Autophagy | 2017-05-09 |
| The WinCF Model - An Inexpensive and Tractable Microcosm of a Mucus Plugged Bronchiole to Study the Microbiology of Lung Infections. | William J Comstock, Edwin Huh, Reiley Weekes, Connor Watson, Tianyang Xu, Pieter C Dorrestein, Robert A Quinn | Journal Of Visualized Experiments : JoVE | 2017-05-08 |
| Development of an animal model of progressive vaccinia in nu/nu mice and the use of bioluminescence imaging for assessment of the efficacy of monoclonal antibodies against vaccinial B5 and L1 proteins. | Marina Zaitseva, Antonia Thomas, Clement A Meseda, Charles Y K Cheung, Claudia G Diaz, Yan Xiang, Shane Crotty, Hana Golding | Antiviral Research | 2017-05-08 |
| Colwellia marinimaniae sp. nov., a hyperpiezophilic species isolated from an amphipod within the Challenger Deep, Mariana Trench. | Masataka Kusube, Than S Kyaw, Kumiko Tanikawa, Roger A Chastain, Kevin M Hardy, James Cameron, Douglas H Bartlett | International Journal Of Systematic And Evolutionary Microbiology | 2017-05-05 |
| Magnitude and Kinetics of Decrease in Liver Stiffness After Antiviral Therapy in Patients With Chronic Hepatitis C: A Systematic Review and Meta-analysis. | Siddharth Singh, Antonio Facciorusso, Rohit Loomba, Yngve T Falck-Ytter | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2017-05-04 |
| Comparison of Fecal Collection Methods for Microbiota Studies in Bangladesh. | Emily Vogtmann, Jun Chen, Muhammad G Kibriya, Yu Chen, Tariqul Islam, Mahbubul Eunes, Alauddin Ahmed, Jabun Naher, Anisur Rahman, Amnon Amir, Jianxin Shi, Christian C Abnet, Heidi Nelson, Rob Knight, Nicholas Chia, Habibul Ahsan, Rashmi Sinha | Applied And Environmental Microbiology | 2017-05-01 |
| Systems biology guided by XCMS Online metabolomics. | Tao Huan, Erica M Forsberg, Duane Rinehart, Caroline H Johnson, Julijana Ivanisevic, H Paul Benton, Mingliang Fang, Aries Aisporna, Brian Hilmers, Farris L Poole, Michael P Thorgersen, Michael W W Adams, Gregory Krantz, Matthew W Fields, Paul D Robbins, Laura J Niedernhofer, Trey Ideker, Erica L Majumder, Judy D Wall, Nicholas J W Rattray, Royston Goodacre, Luke L Lairson, Gary Siuzdak | Nature Methods | 2017-04-28 |
| The Female Urinary Microbiota/Microbiome: Clinical and Research Implications. | Linda Brubaker, Alan J Wolfe | Rambam Maimonides Medical Journal | 2017-04-28 |
| Substrate Profiling and High Resolution Co-complex Crystal Structure of a Secreted C11 Protease Conserved across Commensal Bacteria. | Emily J Roncase, Clara Moon, Sandip Chatterjee, Gonzalo E González-Páez, Charles S Craik, Anthony J O'Donoghue, Dennis W Wolan | ACS Chemical Biology | 2017-04-27 |
| HIV Envelope Glycoform Heterogeneity and Localized Diversity Govern the Initiation and Maturation of a V2 Apex Broadly Neutralizing Antibody Lineage. | Elise Landais, Ben Murrell, Bryan Briney, Sasha Murrell, Kimmo Rantalainen, Zachary T Berndsen, Alejandra Ramos, Lalinda Wickramasinghe, Melissa Laird Smith, Kemal Eren, Natalia de Val, Mengyu Wu, Audrey Cappelletti, Jeffrey Umotoy, Yolanda Lie, Terri Wrin, Paul Algate, Po-Ying Chan-Hui, Etienne Karita, , , Andrew B Ward, Ian A Wilson, Dennis R Burton, Davey Smith, Sergei L Kosakovsky Pond, Pascal Poignard | Immunity | 2017-04-19 |
| Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania. | Samuel A Smits, Jeff Leach, Erica D Sonnenburg, Carlos G Gonzalez, Joshua S Lichtman, Gregor Reid, Rob Knight, Alphaxard Manjurano, John Changalucha, Joshua E Elias, Maria Gloria Dominguez-Bello, Justin L Sonnenburg | Science (New York, N.Y.) | 2017-04-19 |
| Human milk oligosaccharides inhibit growth of group B . | Ann E Lin, Chloe A Autran, Alexandra Szyszka, Tamara Escajadillo, Mia Huang, Kamil Godula, Anthony R Prudden, Geert-Jan Boons, Amanda L Lewis, Kelly S Doran, Victor Nizet, Lars Bode | The Journal Of Biological Chemistry | 2017-04-17 |
| Reply to Comment on "Terrestrial Scavenging of Marine Mammals: Cross-Ecosystem Contaminant Transfer and Potential Risks to Endangered California Condors (Gymnogyps californianus)". | Myra E Finkelstein, Victoria J Bakker, Holly Copeland, Joe Burnett, Jennie Jones Scherbinski, Joseph Brandt, Carolyn M Kurle | Environmental Science & Technology | 2017-04-12 |
| A Novel miR-24-TCF1 Axis in Modulating Effector T Cell Responses. | Sunglim Cho, Cheng-Jang Wu, Duc T Nguyen, Ling-Li Lin, Mei-Chi Chen, Aly Azeem Khan, Bi-Huei Yang, Wenxian Fu, Li-Fan Lu | Journal Of Immunology (Baltimore, Md. : 1950) | 2017-04-12 |
| Correction for Gonzalez et al., "Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort". | Antonio Gonzalez, Embriette Hyde, Naseer Sangwan, Jack A Gilbert, Erik Viirre, Rob Knight | MSystems | 2017-04-11 |
| Human Skin Is the Largest Epithelial Surface for Interaction with Microbes. | Richard L Gallo | The Journal Of Investigative Dermatology | 2017-04-08 |
| Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics. | Aarash Bordbar, James T Yurkovich, Giuseppe Paglia, Ottar Rolfsson, Ólafur E Sigurjónsson, Bernhard O Palsson | Scientific Reports | 2017-04-07 |
| Coupling between distant biofilms and emergence of nutrient time-sharing. | Jintao Liu, Rosa Martinez-Corral, Arthur Prindle, Dong-Yeon D Lee, Joseph Larkin, Marçal Gabalda-Sagarra, Jordi Garcia-Ojalvo, Gürol M Süel | Science (New York, N.Y.) | 2017-04-06 |
| The sponge microbiome project. | Lucas Moitinho-Silva, Shaun Nielsen, Amnon Amir, Antonio Gonzalez, Gail L Ackermann, Carlo Cerrano, Carmen Astudillo-Garcia, Cole Easson, Detmer Sipkema, Fang Liu, Georg Steinert, Giorgos Kotoulas, Grace P McCormack, Guofang Feng, James J Bell, Jan Vicente, Johannes R Björk, Jose M Montoya, Julie B Olson, Julie Reveillaud, Laura Steindler, Mari-Carmen Pineda, Maria V Marra, Micha Ilan, Michael W Taylor, Paraskevi Polymenakou, Patrick M Erwin, Peter J Schupp, Rachel L Simister, Rob Knight, Robert W Thacker, Rodrigo Costa, Russell T Hill, Susanna Lopez-Legentil, Thanos Dailianis, Timothy Ravasi, Ute Hentschel, Zhiyong Li, Nicole S Webster, Torsten Thomas | GigaScience | 2017-04-05 |
| Expanding the Chemical Repertoire of the Endophyte Streptomyces albospinus RLe7 Reveals Amphotericin B as an Inducer of a Fungal Phenotype. | Fernanda Oliveira Chagas, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein, Mônica Tallarico Pupo | Journal Of Natural Products | 2017-04-04 |
| Mosquito Microbiome Dynamics, a Background for Prevalence and Seasonality of West Nile Virus. | Eva Novakova, Douglas C Woodhams, Sonia M Rodríguez-Ruano, Robert M Brucker, Jonathan W Leff, Amin Maharaj, Amnon Amir, Rob Knight, James Scott | Frontiers In Microbiology | 2017-04-04 |
| Retroelement-guided protein diversification abounds in vast lineages of Bacteria and Archaea. | Blair G Paul, David Burstein, Cindy J Castelle, Sumit Handa, Diego Arambula, Elizabeth Czornyj, Brian C Thomas, Partho Ghosh, Jeff F Miller, Jillian F Banfield, David L Valentine | Nature Microbiology | 2017-04-03 |
| A Model for Designing Adaptive Laboratory Evolution Experiments. | Ryan A LaCroix, Bernhard O Palsson, Adam M Feist | Applied And Environmental Microbiology | 2017-03-31 |
| Cerebrospinal fluid cell-free mitochondrial DNA is associated with HIV replication, iron transport, and mild HIV-associated neurocognitive impairment. | Sanjay R Mehta, Josué Pérez-Santiago, Todd Hulgan, Tyler R C Day, Jill Barnholtz-Sloan, Haley Gittleman, Scott Letendre, Ronald Ellis, Robert Heaton, Stephanie Patton, Jesse D Suben, Donald Franklin, Debralee Rosario, David B Clifford, Ann C Collier, Christina M Marra, Benjamin B Gelman, Justin McArthur, Allen McCutchan, Susan Morgello, David Simpson, James Connor, Igor Grant, Asha Kallianpur | Journal Of Neuroinflammation | 2017-03-31 |
| Plasma dickkopf-related protein 1, an antagonist of the Wnt pathway, is associated with HIV-associated neurocognitive impairment. | Chunjiang Yu, Melanie Seaton, Scott Letendre, Robert Heaton, Lena Al-Harthi | AIDS (London, England) | 2017-03-31 |
| Microbiome Tools for Forensic Science. | Jessica L Metcalf, Zhenjiang Z Xu, Amina Bouslimani, Pieter Dorrestein, David O Carter, Rob Knight | Trends In Biotechnology | 2017-03-30 |
| Mass Spectrometry Based Molecular 3D-Cartography of Plant Metabolites. | Dimitrios J Floros, Daniel Petras, Clifford A Kapono, Alexey V Melnik, Tie-Jun Ling, Rob Knight, Pieter C Dorrestein | Frontiers In Plant Science | 2017-03-29 |
| Short Communication: HIV-1 Transmission Networks Across South Korea. | Mi Young Ahn, Joel O Wertheim, Woo Joo Kim, Shin-Woo Kim, Jin Soo Lee, Hea Won Ann, Yongduk Jeon, Jin Young Ahn, Je Eun Song, Dong Hyun Oh, Yong Chan Kim, Eun Jin Kim, In Young Jung, Moo Hyun Kim, Wooyoung Jeong, Su Jin Jeong, Nam Su Ku, June Myung Kim, Davey M Smith, Jun Yong Choi | AIDS Research And Human Retroviruses | 2017-03-27 |
| Elicitation of Robust Tier 2 Neutralizing Antibody Responses in Nonhuman Primates by HIV Envelope Trimer Immunization Using Optimized Approaches. | Matthias Pauthner, Colin Havenar-Daughton, Devin Sok, Joseph P Nkolola, Raiza Bastidas, Archana V Boopathy, Diane G Carnathan, Abishek Chandrashekar, Kimberly M Cirelli, Christopher A Cottrell, Alexey M Eroshkin, Javier Guenaga, Kirti Kaushik, Daniel W Kulp, Jinyan Liu, Laura E McCoy, Aaron L Oom, Gabriel Ozorowski, Kai W Post, Shailendra K Sharma, Jon M Steichen, Steven W de Taeye, Talar Tokatlian, Alba Torrents de la Peña, Salvatore T Butera, Celia C LaBranche, David C Montefiori, Guido Silvestri, Ian A Wilson, Darrell J Irvine, Rogier W Sanders, William R Schief, Andrew B Ward, Richard T Wyatt, Dan H Barouch, Shane Crotty, Dennis R Burton | Immunity | 2017-03-24 |
| PCR-Independent Method of Transformation-Associated Recombination Reveals the Cosmomycin Biosynthetic Gene Cluster in an Ocean Streptomycete. | Charles B Larson, Max Crüsemann, Bradley S Moore | Journal Of Natural Products | 2017-03-23 |
| Skin microbiome and mast cells. | Satomi Igawa, Anna Di Nardo | Translational Research : The Journal Of Laboratory And Clinical Medicine | 2017-03-23 |
| Environmental reservoirs of pathogenic mycobacteria across the Ethiopian biogeographical landscape. | Hayley C King, Tanya Khera-Butler, Phillip James, Brian B Oakley, Girume Erenso, Abraham Aseffa, Rob Knight, Elizabeth M Wellington, Orin Courtenay | PloS One | 2017-03-23 |
| Ecological implications of hypoxia-triggered shifts in secondary metabolism. | Kelley A Gallagher, Greg Wanger, Jane Henderson, Mark Llorente, Chambers C Hughes, Paul R Jensen | Environmental Microbiology | 2017-03-21 |
| Transcriptional characterization of Vibrio fischeri during colonization of juvenile Euprymna scolopes. | Luke R Thompson, Kiel Nikolakakis, Shu Pan, Jennifer Reed, Rob Knight, Edward G Ruby | Environmental Microbiology | 2017-03-21 |
| Metagenomic discovery of polybrominated diphenyl ether biosynthesis by marine sponges. | Vinayak Agarwal, Jessica M Blanton, Sheila Podell, Arnaud Taton, Michelle A Schorn, Julia Busch, Zhenjian Lin, Eric W Schmidt, Paul R Jensen, Valerie J Paul, Jason S Biggs, James W Golden, Eric E Allen, Bradley S Moore | Nature Chemical Biology | 2017-03-20 |
| The Microbiome and Human Biology. | Rob Knight, Chris Callewaert, Clarisse Marotz, Embriette R Hyde, Justine W Debelius, Daniel McDonald, Mitchell L Sogin | Annual Review Of Genomics And Human Genetics | 2017-03-20 |
| Structural basis of the day-night transition in a bacterial circadian clock. | Roger Tseng, Nicolette F Goularte, Archana Chavan, Jansen Luu, Susan E Cohen, Yong-Gang Chang, Joel Heisler, Sheng Li, Alicia K Michael, Sarvind Tripathi, Susan S Golden, Andy LiWang, Carrie L Partch | Science (New York, N.Y.) | 2017-03-16 |
| Phenylthiazole Antibacterial Agents Targeting Cell Wall Synthesis Exhibit Potent Activity in Vitro and in Vivo against Vancomycin-Resistant Enterococci. | Haroon Mohammad, Waleed Younis, Lu Chen, Christine E Peters, Joe Pogliano, Kit Pogliano, Bruce Cooper, Jianan Zhang, Abdelrahman Mayhoub, Eric Oldfield, Mark Cushman, Mohamed N Seleem | Journal Of Medicinal Chemistry | 2017-03-15 |
| Bacterial subversion of cAMP signalling inhibits cathelicidin expression, which is required for innate resistance to Mycobacterium tuberculosis. | Shashank Gupta, Kathryn Winglee, Richard Gallo, William R Bishai | The Journal Of Pathology | 2017-03-15 |
| Epigenetic landscapes reveal transcription factors that regulate CD8 T cell differentiation. | Bingfei Yu, Kai Zhang, J Justin Milner, Clara Toma, Runqiang Chen, James P Scott-Browne, Renata M Pereira, Shane Crotty, John T Chang, Matthew E Pipkin, Wei Wang, Ananda W Goldrath | Nature Immunology | 2017-03-13 |
| Pharmacological Targeting of the Host-Pathogen Interaction: Alternatives to Classical Antibiotics to Combat Drug-Resistant Superbugs. | Jason Munguia, Victor Nizet | Trends In Pharmacological Sciences | 2017-03-08 |
| Whole-genome analysis of mycobacteria from birds at the San Diego Zoo. | Wayne Pfeiffer, Josephine Braun, Jennifer Burchell, Carmel L Witte, Bruce A Rideout | PloS One | 2017-03-07 |
| Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping. | Amnon Amir, Daniel McDonald, Jose A Navas-Molina, Justine Debelius, James T Morton, Embriette Hyde, Adam Robbins-Pianka, Rob Knight | MSystems | 2017-03-07 |
| Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns. | Amnon Amir, Daniel McDonald, Jose A Navas-Molina, Evguenia Kopylova, James T Morton, Zhenjiang Zech Xu, Eric P Kightley, Luke R Thompson, Embriette R Hyde, Antonio Gonzalez, Rob Knight | MSystems | 2017-03-07 |
| Comparative genomics uncovers the prolific and distinctive metabolic potential of the cyanobacterial genus . | Tiago Leao, Guilherme Castelão, Anton Korobeynikov, Emily A Monroe, Sheila Podell, Evgenia Glukhov, Eric E Allen, William H Gerwick, Lena Gerwick | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2017-03-06 |
| Electrostatic Interactions as Mediators in the Allosteric Activation of Protein Kinase A RIα. | Emília P Barros, Robert D Malmstrom, Kimya Nourbakhsh, Jason C Del Rio, Alexandr P Kornev, Susan S Taylor, Rommie E Amaro | Biochemistry | 2017-03-06 |
| Intestinal microbiota and nonalcoholic steatohepatitis. | Katharina Brandl, Bernd Schnabl | Current Opinion In Gastroenterology | 2017-03-04 |
| Normalization and microbial differential abundance strategies depend upon data characteristics. | Sophie Weiss, Zhenjiang Zech Xu, Shyamal Peddada, Amnon Amir, Kyle Bittinger, Antonio Gonzalez, Catherine Lozupone, Jesse R Zaneveld, Yoshiki Vázquez-Baeza, Amanda Birmingham, Embriette R Hyde, Rob Knight | Microbiome | 2017-03-03 |
| Neurobehavioral Disturbances During Acute and Early HIV Infection. | Rujvi Kamat, Katie L Doyle, Jennifer E Iudicello, Erin E Morgan, Sheldon Morris, Davey M Smith, Susan J Little, Igor Grant, Steven Paul Woods, | Cognitive And Behavioral Neurology : Official Journal Of The Society For Behavioral And Cognitive Neurology | 2017-03-01 |
| Dynamic of CSF and serum biomarkers in HIV-1 subtype C encephalitis with CNS genetic compartmentalization-case study. | Sergio M de Almeida, Indianara Rotta, Clea E Ribeiro, Michelli F Oliveira, Antoine Chaillon, Ana Paula de Pereira, Ana Paula Cunha, Marise Zonta, Joao França Bents, Sonia M Raboni, Davey Smith, Scott Letendre, Ronald J Ellis | Journal Of Neurovirology | 2017-02-28 |
| Lyophilized visually readable loop-mediated isothermal reverse transcriptase nucleic acid amplification test for detection Ebola Zaire RNA. | Christoph Carter, Kevan Akrami, Drew Hall, Davey Smith, Eliah Aronoff-Spencer | Journal Of Virological Methods | 2017-02-24 |
| Gut-liver axis at the frontier of host-microbial interactions. | Katharina Brandl, Vipin Kumar, Lars Eckmann | American Journal Of Physiology. Gastrointestinal And Liver Physiology | 2017-02-23 |
| Evidence To Support Continuation of Statin Therapy in Patients with Staphylococcus aureus Bacteremia. | Aisling R Caffrey, Tristan T Timbrook, Eunsun Noh, George Sakoulas, Steven M Opal, Victor Nizet, Kerry L LaPlante | Antimicrobial Agents And Chemotherapy | 2017-02-23 |
| Depressive symptoms in HIV-infected and seronegative control subjects in Cameroon: Effect of age, education and gender. | Georgette D Kanmogne, Fang Qiu, Félicien E Ntone, Julius Y Fonsah, Dora M Njamnshi, Callixte T Kuate, Roland F Doh, Anne M Kengne, Claude T Tagny, Emilienne Nchindap, Léopoldine Kenmogne, Dora Mbanya, Mariana Cherner, Robert K Heaton, Alfred K Njamnshi | PloS One | 2017-02-23 |
| Spatiotemporal dynamics of HIV-1 transmission in France (1999-2014) and impact of targeted prevention strategies. | Antoine Chaillon, Asma Essat, Pierre Frange, Davey M Smith, Constance Delaugerre, Francis Barin, Jade Ghosn, Gilles Pialoux, Olivier Robineau, Christine Rouzioux, Cécile Goujard, Laurence Meyer, Marie-Laure Chaix, | Retrovirology | 2017-02-21 |
| Group A Streptococcal M1 Protein Provides Resistance against the Antimicrobial Activity of Histones. | Simon Döhrmann, Christopher N LaRock, Ericka L Anderson, Jason N Cole, Brinda Ryali, Chelsea Stewart, Poochit Nonejuie, Joe Pogliano, Ross Corriden, Partho Ghosh, Victor Nizet | Scientific Reports | 2017-02-21 |
| Uncovering the Horseshoe Effect in Microbial Analyses. | James T Morton, Liam Toran, Anna Edlund, Jessica L Metcalf, Christian Lauber, Rob Knight | MSystems | 2017-02-21 |
| Hepatitis B Reactivation Associated With Immune Suppressive and Biological Modifier Therapies: Current Concepts, Management Strategies, and Future Directions. | Rohit Loomba, T Jake Liang | Gastroenterology | 2017-02-20 |
| Oxidative Stress Resulting From Infection Contributes to Gastric Carcinogenesis. | Lindsay D Butcher, Gerco den Hartog, Peter B Ernst, Sheila E Crowe | Cellular And Molecular Gastroenterology And Hepatology | 2017-02-20 |
| Targeting proteasomes in infectious organisms to combat disease. | Betsaida Bibo-Verdugo, Zhenze Jiang, Conor R Caffrey, Anthony J O'Donoghue | The FEBS Journal | 2017-02-16 |
| Effect of myeloid differentiation primary response gene 88 on expression profiles of genes during the development and progression of Helicobacter-induced gastric cancer. | Ivonne Lozano-Pope, Arnika Sharma, Michael Matthias, Kelly S Doran, Marygorret Obonyo | BMC Cancer | 2017-02-15 |
| Daptomycin for Complicated Skin Infections: A Randomized Trial. | John Bradley, Chad Glasser, Hernando Patino, Sandra R Arnold, Antonio Arrieta, Blaise Congeni, Robert S Daum, Tsoline Kojaoghlanian, Minjung Yoon, Diane Anastasiou, Dominik J Wolf, Paula Bokesch | Pediatrics | 2017-02-15 |
| Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome. | Erin M Hill-Burns, Justine W Debelius, James T Morton, William T Wissemann, Matthew R Lewis, Zachary D Wallen, Shyamal D Peddada, Stewart A Factor, Eric Molho, Cyrus P Zabetian, Rob Knight, Haydeh Payami | Movement Disorders : Official Journal Of The Movement Disorder Society | 2017-02-14 |
| Origin of microbial biomineralization and magnetotaxis during the Archean. | Wei Lin, Greig A Paterson, Qiyun Zhu, Yinzhao Wang, Evguenia Kopylova, Ying Li, Rob Knight, Dennis A Bazylinski, Rixiang Zhu, Joseph L Kirschvink, Yongxin Pan | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2017-02-13 |
| Dynamics of the human gut microbiome in inflammatory bowel disease. | Jonas Halfvarson, Colin J Brislawn, Regina Lamendella, Yoshiki Vázquez-Baeza, William A Walters, Lisa M Bramer, Mauro D'Amato, Ferdinando Bonfiglio, Daniel McDonald, Antonio Gonzalez, Erin E McClure, Mitchell F Dunklebarger, Rob Knight, Janet K Jansson | Nature Microbiology | 2017-02-13 |
| AICAR ameliorates high-fat diet-associated pathophysiology in mouse and ex vivo models, independent of adiponectin. | Emma Börgeson, Ville Wallenius, Gulam H Syed, Manjula Darshi, Juan Lantero Rodriguez, Christina Biörserud, Malin Ragnmark Ek, Per Björklund, Marianne Quiding-Järbrink, Lars Fändriks, Catherine Godson, Kumar Sharma | Diabetologia | 2017-02-10 |
| High-throughput single-cell analysis for the proteomic dynamics study of the yeast osmotic stress response. | Rongfei Zhang, Haiyu Yuan, Shujing Wang, Qi Ouyang, Yong Chen, Nan Hao, Chunxiong Luo | Scientific Reports | 2017-02-09 |
| Massively parallel digital high resolution melt for rapid and absolutely quantitative sequence profiling. | Daniel Ortiz Velez, Hannah Mack, Julietta Jupe, Sinead Hawker, Ninad Kulkarni, Behnam Hedayatnia, Yang Zhang, Shelley Lawrence, Stephanie I Fraley | Scientific Reports | 2017-02-08 |
| Microbiome precision editing: Using PEG as a selective fermentation initiator against methicillin-resistant Staphylococcus aureus. | Ming-Shan Kao, Stephen Huang, Wei-Lin Chang, Ming-Fa Hsieh, Chun-Jen Huang, Richard L Gallo, Chun-Ming Huang | Biotechnology Journal | 2017-02-08 |
| Selective Whole-Genome Amplification Is a Robust Method That Enables Scalable Whole-Genome Sequencing of Plasmodium vivax from Unprocessed Clinical Samples. | Annie N Cowell, Dorothy E Loy, Sesh A Sundararaman, Hugo Valdivia, Kathleen Fisch, Andres G Lescano, G Christian Baldeviano, Salomon Durand, Vince Gerbasi, Colin J Sutherland, Debbie Nolder, Joseph M Vinetz, Beatrice H Hahn, Elizabeth A Winzeler | MBio | 2017-02-07 |
| Thy-1 interaction with Fas in lipid rafts regulates fibroblast apoptosis and lung injury resolution. | Xiaoqiu Liu, Simon S Wong, Carmen A Taype, Jeeyeon Kim, Tzu-Pin Shentu, Celia R Espinoza, J Cameron Finley, John E Bradley, Brian P Head, Hemal H Patel, Emma J Mah, James S Hagood | Laboratory Investigation; A Journal Of Technical Methods And Pathology | 2017-02-06 |
| SAMP-ending down sepsis. | Alison Coady, Victor Nizet | Annals Of Translational Medicine | 2017-02-03 |
| Loss of CMAH during Human Evolution Primed the Monocyte-Macrophage Lineage toward a More Inflammatory and Phagocytic State. | Jonathan J Okerblom, Flavio Schwarz, Josh Olson, William Fletes, Syed Raza Ali, Paul T Martin, Christopher K Glass, Victor Nizet, Ajit Varki | Journal Of Immunology (Baltimore, Md. : 1950) | 2017-02-01 |
| Effects of Actinomycete Secondary Metabolites on Sediment Microbial Communities. | Nastassia V Patin, Michelle Schorn, Kristen Aguinaldo, Tommie Lincecum, Bradley S Moore, Paul R Jensen | Applied And Environmental Microbiology | 2017-02-01 |
| Tfh cells and HIV bnAbs, an immunodominance model of the HIV neutralizing antibody generation problem. | Colin Havenar-Daughton, Jeong Hyun Lee, Shane Crotty | Immunological Reviews | 2017-01-31 |
| The differential ability of asparagine and glutamine in promoting the closed/active enzyme conformation rationalizes the Wolinella succinogenes L-asparaginase substrate specificity. | Hien Anh Nguyen, Donald L Durden, Arnon Lavie | Scientific Reports | 2017-01-31 |
| Chitosan-based water-propelled micromotors with strong antibacterial activity. | Jorge A M Delezuk, Doris E Ramírez-Herrera, Berta Esteban-Fernández de Ávila, Joseph Wang | Nanoscale | 2017-01-31 |
| YAP-IL-6ST autoregulatory loop activated on APC loss controls colonic tumorigenesis. | Koji Taniguchi, Toshiro Moroishi, Petrus R de Jong, Michal Krawczyk, Britta Moyo Grebbin, Huiyan Luo, Rui-Hua Xu, Nicole Golob-Schwarzl, Caroline Schweiger, Kepeng Wang, Giuseppe Di Caro, Ying Feng, Eric R Fearon, Eyal Raz, Lukas Kenner, Henner F Farin, Kun-Liang Guan, Johannes Haybaeck, Christian Datz, Kang Zhang, Michael Karin | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2017-01-27 |
| Copper toxicity response influences mesotrophic Synechococcus community structure. | Rhona K Stuart, Randelle Bundy, Kristen Buck, Majid Ghassemain, Kathy Barbeau, Brian Palenik | Environmental Microbiology | 2017-01-26 |
| Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy. | Michael H Kramer, Jean-Claude Farré, Koyel Mitra, Michael Ku Yu, Keiichiro Ono, Barry Demchak, Katherine Licon, Mitchell Flagg, Rama Balakrishnan, J Michael Cherry, Suresh Subramani, Trey Ideker | Molecular Cell | 2017-01-26 |
| Patterns in Gut Microbiota Similarity Associated with Degree of Sociality among Sex Classes of a Neotropical Primate. | Katherine R Amato, Sarie Van Belle, Anthony Di Fiore, Alejandro Estrada, Rebecca Stumpf, Bryan White, Karen E Nelson, Rob Knight, Steven R Leigh | Microbial Ecology | 2017-01-26 |
| Blood Group Antigen Recognition via the Group A Streptococcal M Protein Mediates Host Colonization. | David M P De Oliveira, Lauren Hartley-Tassell, Arun Everest-Dass, Christopher J Day, Rebecca A Dabbs, Thomas Ve, Bostjan Kobe, Victor Nizet, Nicolle H Packer, Mark J Walker, Michael P Jennings, Martina L Sanderson-Smith | MBio | 2017-01-24 |
| Classical β-Lactamase Inhibitors Potentiate the Activity of Daptomycin against Methicillin-Resistant Staphylococcus aureus and Colistin against Acinetobacter baumannii. | George Sakoulas, Warren Rose, Andrew Berti, Joshua Olson, Jason Munguia, Poochit Nonejuie, Eleanna Sakoulas, Michael J Rybak, Joseph Pogliano, Victor Nizet | Antimicrobial Agents And Chemotherapy | 2017-01-24 |
| Paired Siglec receptors generate opposite inflammatory responses to a human-specific pathogen. | Flavio Schwarz, Corinna S Landig, Shoib Siddiqui, Ismael Secundino, Joshua Olson, Nissi Varki, Victor Nizet, Ajit Varki | The EMBO Journal | 2017-01-18 |
| Balance Trees Reveal Microbial Niche Differentiation. | James T Morton, Jon Sanders, Robert A Quinn, Daniel McDonald, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Jose A Navas-Molina, Se Jin Song, Jessica L Metcalf, Embriette R Hyde, Manuel Lladser, Pieter C Dorrestein, Rob Knight | MSystems | 2017-01-17 |
| Influence of the microbiota on host physiology - moving beyond the gut. | Kim E Barrett, Gary D Wu | The Journal Of Physiology | 2017-01-14 |
| Bringing the Dynamic Microbiome to Life with Animations. | Yoshiki Vázquez-Baeza, Antonio Gonzalez, Larry Smarr, Daniel McDonald, James T Morton, Jose A Navas-Molina, Rob Knight | Cell Host & Microbe | 2017-01-13 |
| Species-Independent Attraction to Biofilms through Electrical Signaling. | Jacqueline Humphries, Liyang Xiong, Jintao Liu, Arthur Prindle, Fang Yuan, Heidi A Arjes, Lev Tsimring, Gürol M Süel | Cell | 2017-01-12 |
| Suppression of Beneficial Mutations in Dynamic Microbial Populations. | Philip Bittihn, Jeff Hasty, Lev S Tsimring | Physical Review Letters | 2017-01-12 |
| Fatty Acid Biosynthesis Pathways in . | Aleksandr Demidenko, Ilya R Akberdin, Marco Allemann, Eric E Allen, Marina G Kalyuzhnaya | Frontiers In Microbiology | 2017-01-10 |
| Whole-Genome Sequencing of Invasion-Resistant Cells Identifies Laminin α2 as a Host Factor for Bacterial Invasion. | Xander M van Wijk, Simon Döhrmann, Björn M Hallström, Shangzhong Li, Bjørn G Voldborg, Brandon X Meng, Karen K McKee, Toin H van Kuppevelt, Peter D Yurchenco, Bernhard O Palsson, Nathan E Lewis, Victor Nizet, Jeffrey D Esko | MBio | 2017-01-10 |
| Dietary Prebiotics and Bioactive Milk Fractions Improve NREM Sleep, Enhance REM Sleep Rebound and Attenuate the Stress-Induced Decrease in Diurnal Temperature and Gut Microbial Alpha Diversity. | Robert S Thompson, Rachel Roller, Agnieszka Mika, Benjamin N Greenwood, Rob Knight, Maciej Chichlowski, Brian M Berg, Monika Fleshner | Frontiers In Behavioral Neuroscience | 2017-01-10 |
| Redox crisis underlies conditional light-dark lethality in cyanobacterial mutants that lack the circadian regulator, RpaA. | Spencer Diamond, Benjamin E Rubin, Ryan K Shultzaberger, You Chen, Chase D Barber, Susan S Golden | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2017-01-10 |
| Potent Inhibition of Monoamine Oxidase B by a Piloquinone from Marine-Derived sp. CNQ-027. | Hyun Woo Lee, Hansol Choi, Sang-Jip Nam, William Fenical, Hoon Kim | Journal Of Microbiology And Biotechnology | 2017-01-10 |
| Advances in Engineering the Fly Genome with the CRISPR-Cas System. | Ethan Bier, Melissa M Harrison, Kate M O'Connor-Giles, Jill Wildonger | Genetics | 2017-01-09 |
| Social and Genetic Networks of HIV-1 Transmission in New York City. | Joel O Wertheim, Sergei L Kosakovsky Pond, Lisa A Forgione, Sanjay R Mehta, Ben Murrell, Sharmila Shah, Davey M Smith, Konrad Scheffler, Lucia V Torian | PLoS Pathogens | 2017-01-09 |
| Identification of microsporidia host-exposed proteins reveals a repertoire of rapidly evolving proteins. | Aaron W Reinke, Keir M Balla, Eric J Bennett, Emily R Troemel | Nature Communications | 2017-01-09 |
| Measuring Success in Global Health Training: Data From 14 Years of a Postdoctoral Fellowship in Infectious Diseases and Tropical Medicine. | Joseph D Tucker, Molly A Hughes, Ravi V Durvasula, Joseph M Vinetz, Victoria P McGovern, Rhonda Schultz, Claire Panosian Dunavan, Mary E Wilson, Danny A Milner, Regina C LaRocque, Stephen B Calderwood, Richard L Guerrant, Peter F Weller, Terrie E Taylor | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2017-01-09 |
| Molecular Features of the V1-V4 Coding Region of Sexually Transmitted Human Immunodeficiency Virus Type 1. | Jun Yong Choi, Sergei L Kosakovsky Pond, Christy M Anderson, Douglas D Richman, Davey M Smith | The Journal Of Infectious Diseases | 2017-01-03 |
| Early Antiretroviral Therapy Is Associated with Lower HIV DNA Molecular Diversity and Lower Inflammation in Cerebrospinal Fluid but Does Not Prevent the Establishment of Compartmentalized HIV DNA Populations. | Michelli F Oliveira, Antoine Chaillon, Masato Nakazawa, Milenka Vargas, Scott L Letendre, Matthew C Strain, Ronald J Ellis, Sheldon Morris, Susan J Little, Davey M Smith, Sara Gianella | PLoS Pathogens | 2017-01-03 |
| Serine-Aspartate Repeat Protein D Increases Staphylococcus aureus Virulence and Survival in Blood. | Fatemeh Askarian, Satoshi Uchiyama, J Andrés Valderrama, Clement Ajayi, Johanna U E Sollid, Nina M van Sorge, Victor Nizet, Jos A G van Strijp, Mona Johannessen | Infection And Immunity | 2016-12-29 |
| Calcium Enhances Bile Salt-Dependent Virulence Activation in Vibrio cholerae. | Amanda J Hay, Menghua Yang, Xiaoyun Xia, Zhi Liu, Justin Hammons, William Fenical, Jun Zhu | Infection And Immunity | 2016-12-29 |
| Phase I Clinical Trial Results of Auranofin, a Novel Antiparasitic Agent. | Edmund V Capparelli, Robin Bricker-Ford, M John Rogers, James H McKerrow, Sharon L Reed | Antimicrobial Agents And Chemotherapy | 2016-12-27 |
| Collective Resistance in Microbial Communities by Intracellular Antibiotic Deactivation. | Robin A Sorg, Leo Lin, G Sander van Doorn, Moritz Sorg, Joshua Olson, Victor Nizet, Jan-Willem Veening | PLoS Biology | 2016-12-27 |
| Human Milk Oligosaccharides and the Preterm Infant: A Journey in Sickness and in Health. | Sara Moukarzel, Lars Bode | Clinics In Perinatology | 2016-12-27 |
| Etravirine and Rilpivirine Drug Resistance Among HIV-1 Subtype C Infected Children Failing Non-Nucleoside Reverse Transcriptase Inhibitor-Based Regimens in South India. | Shanmugam Saravanan, Bagavathi Kausalya, Selvamurthi Gomathi, Sathasivam Sivamalar, Balakrishnan Pachamuthu, Poongulali Selvamuthu, Amrose Pradeep, Solomon Sunil, Sarvode N Mothi, Davey M Smith, Rami Kantor | AIDS Research And Human Retroviruses | 2016-12-23 |
| Rapid Chagas Disease Drug Target Discovery Using Directed Evolution in Drug-Sensitive Yeast. | Sabine Ottilie, Gregory M Goldgof, Claudia Magalhaes Calvet, Gareth K Jennings, Greg LaMonte, Jake Schenken, Edgar Vigil, Prianka Kumar, Laura-Isobel McCall, Eduardo Soares Constantino Lopes, Felicia Gunawan, Jennifer Yang, Yo Suzuki, Jair L Siqueira-Neto, James H McKerrow, Rommie E Amaro, Larissa M Podust, Jacob D Durrant, Elizabeth A Winzeler | ACS Chemical Biology | 2016-12-23 |
| Spatial Molecular Architecture of the Microbial Community of a Lichen. | Neha Garg, Yi Zeng, Anna Edlund, Alexey V Melnik, Laura M Sanchez, Hosein Mohimani, Alexey Gurevich, Vivian Miao, Stefan Schiffler, Yan Wei Lim, Tal Luzzatto-Knaan, Shengxin Cai, Forest Rohwer, Pavel A Pevzner, Robert H Cichewicz, Theodore Alexandrov, Pieter C Dorrestein | MSystems | 2016-12-20 |
| Bidirectional Communication between Liver and Gut during Alcoholic Liver Disease. | Peter Stärkel, Bernd Schnabl | Seminars In Liver Disease | 2016-12-20 |
| Intestinal adaptation in proximal and distal segments: Two epithelial responses diverge after intestinal separation. | Kathy A Schall, Kathleen A Holoyda, Mubina Isani, Christopher Schlieve, Tasha Salisbury, Thien Khuu, Justine W Debelius, Rex A Moats, Harvey A Pollack, Ching-Ling Lien, Kathryn Fowler, Xiaogang Hou, Rob Knight, Tracy C Grikscheit | Surgery | 2016-12-20 |
| Diets high in resistant starch increase plasma levels of trimethylamine-N-oxide, a gut microbiome metabolite associated with CVD risk. | Nathalie Bergeron, Paul T Williams, Regina Lamendella, Nastaran Faghihnia, Alyssa Grube, Xinmin Li, Zeneng Wang, Rob Knight, Janet K Jansson, Stanley L Hazen, Ronald M Krauss | The British Journal Of Nutrition | 2016-12-20 |
| Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B. | Ke Shi, Michael A Carpenter, Surajit Banerjee, Nadine M Shaban, Kayo Kurahashi, Daniel J Salamango, Jennifer L McCann, Gabriel J Starrett, Justin V Duffy, Özlem Demir, Rommie E Amaro, Daniel A Harki, Reuben S Harris, Hideki Aihara | Nature Structural & Molecular Biology | 2016-12-19 |
| Vulvodynia: What We Know and Where We Should Be Going. | Logan M Havemann, David R Cool, Pascal Gagneux, Michael P Markey, Jerome L Yaklic, Rose A Maxwell, Ashvin Iyer, Steven R Lindheim | Journal Of Lower Genital Tract Disease | 2016-12-17 |
| Identification of Two New HIV-1 Circulating Recombinant Forms (CRF87_cpx and CRF88_BC) from Reported Unique Recombinant Forms in Asia. | Yihong Hu, Zhenzhou Wan, Yan-Heng Zhou, Davey Smith, Yong-Tang Zheng, Chiyu Zhang | AIDS Research And Human Retroviruses | 2016-12-13 |
| Literature mining supports a next-generation modeling approach to predict cellular byproduct secretion. | Zachary A King, Edward J O'Brien, Adam M Feist, Bernhard O Palsson | Metabolic Engineering | 2016-12-13 |
| A Large Collection of Novel Nematode-Infecting Microsporidia and Their Diverse Interactions with Caenorhabditis elegans and Other Related Nematodes. | Gaotian Zhang, Martin Sachse, Marie-Christine Prevost, Robert J Luallen, Emily R Troemel, Marie-Anne Félix | PLoS Pathogens | 2016-12-12 |
| A Chemical Biology Solution to Problems with Studying Biologically Important but Unstable 9-O-Acetyl Sialic Acids. | Zahra Khedri, An Xiao, Hai Yu, Corinna Susanne Landig, Wanqing Li, Sandra Diaz, Brian R Wasik, Colin R Parrish, Lee-Ping Wang, Ajit Varki, Xi Chen | ACS Chemical Biology | 2016-12-12 |
| Assembly of long error-prone reads using de Bruijn graphs. | Yu Lin, Jeffrey Yuan, Mikhail Kolmogorov, Max W Shen, Mark Chaisson, Pavel A Pevzner | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2016-12-12 |
| Use of plankton-derived vitamin B1 precursors, especially thiazole-related precursor, by key marine picoeukaryotic phytoplankton. | Ryan W Paerl, Francois-Yves Bouget, Jean-Claude Lozano, Valérie Vergé, Philippe Schatt, Eric E Allen, Brian Palenik, Farooq Azam | The ISME Journal | 2016-12-09 |
| Antibiotic discovery is a walk in the park. | Louis-Félix Nothias, Rob Knight, Pieter C Dorrestein | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2016-12-09 |
| Machine learning in computational biology to accelerate high-throughput protein expression. | Anand Sastry, Jonathan Monk, Hanna Tegel, Mathias Uhlen, Bernhard O Palsson, Johan Rockberg, Elizabeth Brunk | Bioinformatics (Oxford, England) | 2016-12-08 |
| The Selective Estrogen Receptor Modulator Raloxifene Inhibits Neutrophil Extracellular Trap Formation. | Roxana Flores, Simon Döhrmann, Christina Schaal, Abdul Hakkim, Victor Nizet, Ross Corriden | Frontiers In Immunology | 2016-12-07 |
| Rapidly evolving homing CRISPR barcodes. | Reza Kalhor, Prashant Mali, George M Church | Nature Methods | 2016-12-05 |
| Transmission of viruses via our microbiomes. | Melissa Ly, Marcus B Jones, Shira R Abeles, Tasha M Santiago-Rodriguez, Jonathan Gao, Ivan C Chan, Chandrabali Ghose, David T Pride | Microbiome | 2016-12-02 |
| Ecological networking of cystic fibrosis lung infections. | Robert A Quinn, Katrine Whiteson, Yan Wei Lim, Jiangchao Zhao, Douglas Conrad, John J LiPuma, Forest Rohwer, Stefanie Widder | NPJ Biofilms And Microbiomes | 2016-12-02 |
| Unique attributes of cyanobacterial metabolism revealed by improved genome-scale metabolic modeling and essential gene analysis. | Jared T Broddrick, Benjamin E Rubin, David G Welkie, Niu Du, Nathan Mih, Spencer Diamond, Jenny J Lee, Susan S Golden, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2016-12-01 |
| The Critical and Multifunctional Roles of Antimicrobial Peptides in Dermatology. | Toshiya Takahashi, Richard L Gallo | Dermatologic Clinics | 2016-11-29 |
| Classification of Chronic Rhinosinusitis-Working Toward Personalized Diagnosis. | Adam S DeConde, Timothy L Smith | Otolaryngologic Clinics Of North America | 2016-11-28 |
| Ecological speciation of bacteriophage lambda in allopatry and sympatry. | Justin R Meyer, Devin T Dobias, Sarah J Medina, Lisa Servilio, Animesh Gupta, Richard E Lenski | Science (New York, N.Y.) | 2016-11-24 |
| Natural products as mediators of disease. | Neha Garg, Tal Luzzatto-Knaan, Alexey V Melnik, Andrés Mauricio Caraballo-Rodríguez, Dimitrios J Floros, Daniel Petras, Rachel Gregor, Pieter C Dorrestein, Vanessa V Phelan | Natural Product Reports | 2016-11-22 |
| Evasion of Neutrophil Extracellular Traps by Respiratory Pathogens. | Daniel M L Storisteanu, Joanna M Pocock, Andrew S Cowburn, Jatinder K Juss, Angalee Nadesalingam, Victor Nizet, Edwin R Chilvers | American Journal Of Respiratory Cell And Molecular Biology | 2016-11-18 |
| Principles of proteome allocation are revealed using proteomic data and genome-scale models. | Laurence Yang, James T Yurkovich, Colton J Lloyd, Ali Ebrahim, Michael A Saunders, Bernhard O Palsson | Scientific Reports | 2016-11-18 |
| Cell-wall remodeling drives engulfment during sporulation. | Nikola Ojkic, Javier López-Garrido, Kit Pogliano, Robert G Endres | ELife | 2016-11-17 |
| Family-wide Structural Characterization and Genomic Comparisons Decode the Diversity-oriented Biosynthesis of Thalassospiramides by Marine Proteobacteria. | Weipeng Zhang, Liang Lu, Qiliang Lai, Beika Zhu, Zhongrui Li, Ying Xu, Zongze Shao, Karl Herrup, Bradley S Moore, Avena C Ross, Pei-Yuan Qian | The Journal Of Biological Chemistry | 2016-11-14 |
| Lifestyle chemistries from phones for individual profiling. | Amina Bouslimani, Alexey V Melnik, Zhenjiang Xu, Amnon Amir, Ricardo R da Silva, Mingxun Wang, Nuno Bandeira, Theodore Alexandrov, Rob Knight, Pieter C Dorrestein | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2016-11-14 |
| Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. | Robert M Bowers, Nikos C Kyrpides, Ramunas Stepanauskas, Miranda Harmon-Smith, Devin Doud, T B K Reddy, Frederik Schulz, Jessica Jarett, Adam R Rivers, Emiley A Eloe-Fadrosh, Susannah G Tringe, Natalia N Ivanova, Alex Copeland, Alicia Clum, Eric D Becraft, Rex R Malmstrom, Bruce Birren, Mircea Podar, Peer Bork, George M Weinstock, George M Garrity, Jeremy A Dodsworth, Shibu Yooseph, Granger Sutton, Frank O Glöckner, Jack A Gilbert, William C Nelson, Steven J Hallam, Sean P Jungbluth, Thijs J G Ettema, Scott Tighe, Konstantinos T Konstantinidis, Wen-Tso Liu, Brett J Baker, Thomas Rattei, Jonathan A Eisen, Brian Hedlund, Katherine D McMahon, Noah Fierer, Rob Knight, Rob Finn, Guy Cochrane, Ilene Karsch-Mizrachi, Gene W Tyson, Christian Rinke, , Alla Lapidus, Folker Meyer, Pelin Yilmaz, Donovan H Parks, A M Eren, Lynn Schriml, Jillian F Banfield, Philip Hugenholtz, Tanja Woyke | Nature Biotechnology | 2016-11-10 |
| Improving Detection of HIV-Associated Cognitive Impairment: Comparison of the International HIV Dementia Scale and a Brief Screening Battery. | Sérgio Monteiro de Almeida, Rujvi Kamat, Mariana Cherner, Anya Umlauf, Clea E Ribeiro, Ana Paula de Pereira, Donald Franklin, Robert K Heaton, Ronald J Ellis | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2016-11-10 |
| Targeting Inflammation in Cancer Prevention and Therapy. | Jelena Todoric, Laura Antonucci, Michael Karin | Cancer Prevention Research (Philadelphia, Pa.) | 2016-11-10 |
| A Precision Microbiome Approach Using Sucrose for Selective Augmentation of Staphylococcus epidermidis Fermentation against Propionibacterium acnes. | Yanhan Wang, Ming-Shan Kao, Jinghua Yu, Stephen Huang, Shinta Marito, Richard L Gallo, Chun-Ming Huang | International Journal Of Molecular Sciences | 2016-11-09 |
| The aldehyde dehydrogenase, AldA, is essential for L-1,2-propanediol utilization in laboratory-evolved Escherichia coli. | Ramy K Aziz, Jonathan M Monk, Kathleen A Andrews, Jenny Nhan, Valerie L Khaw, Hesper Wong, Bernhard O Palsson, Pep Charusanti | Microbiological Research | 2016-11-04 |
| Blood-CSF barrier and compartmentalization of CNS cellular immune response in HIV infection. | Sérgio M de Almeida, Indianara Rotta, Clea E Ribeiro, Davey Smith, Ruiyi Wang, Jennifer Judicello, Michael Potter, Florin Vaida, Scott Letendre, Ronald J Ellis, | Journal Of Neuroimmunology | 2016-11-03 |
| PD-1-PD-L1 immune-checkpoint blockade in B-cell lymphomas. | Aaron Goodman, Sandip P Patel, Razelle Kurzrock | Nature Reviews. Clinical Oncology | 2016-11-02 |
| De Novo MS/MS Sequencing of Native Human Antibodies. | Adrian Guthals, Yutian Gan, Laura Murray, Yongmei Chen, Jeremy Stinson, Gerald Nakamura, Jennie R Lill, Wendy Sandoval, Nuno Bandeira | Journal Of Proteome Research | 2016-11-02 |
| Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides. | Don D Nguyen, Alexey V Melnik, Nobuhiro Koyama, Xiaowen Lu, Michelle Schorn, Jinshu Fang, Kristen Aguinaldo, Tommie L Lincecum, Maarten G K Ghequire, Victor J Carrion, Tina L Cheng, Brendan M Duggan, Jacob G Malone, Tim H Mauchline, Laura M Sanchez, A Marm Kilpatrick, Jos M Raaijmakers, René De Mot, Bradley S Moore, Marnix H Medema, Pieter C Dorrestein | Nature Microbiology | 2016-10-31 |
| FRT - FONDATION RENE TOURAINE: An International Foundation For Dermatology. | Thomas C G Bosch, Karsten Zengler, Shruti Naik, Tilo Biedermann, Heidi H Kong, Karin Loser, Holger Brüggeman, Chris Calleawert, Jo Lambert, Tom Van de Wiele | Experimental Dermatology | 2016-10-30 |
| Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRP. | Donghyuk Kim, Sang Woo Seo, Ye Gao, Hojung Nam, Gabriela I Guzman, Byung-Kwan Cho, Bernhard O Palsson | Nucleic Acids Research | 2016-10-28 |
| Latent Toxoplasma Infection and Higher Toxoplasma gondii Immunoglobulin G Levels Are Associated With Worse Neurocognitive Functioning in HIV-Infected Adults. | Ajay R Bharti, Allen McCutchan, Reena Deutsch, Davey M Smith, Ronald J Ellis, Mariana Cherner, Steven P Woods, Robert K Heaton, Igor Grant, Scott L Letendre | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2016-10-28 |
| Sequencing rare marine actinomycete genomes reveals high density of unique natural product biosynthetic gene clusters. | Michelle A Schorn, Mohammad M Alanjary, Kristen Aguinaldo, Anton Korobeynikov, Sheila Podell, Nastassia Patin, Tommie Lincecum, Paul R Jensen, Nadine Ziemert, Bradley S Moore | Microbiology (Reading, England) | 2016-10-27 |
| HIV-associated neurocognitive disorder is associated with HIV-1 dual infection. | Gabriel A Wagner, Antoine Chaillon, Siqi Liu, Donald R Franklin, Gemma Caballero, Sergei L Kosakovsky Pond, Florin Vaida, Robert K Heaton, Scott L Letendre, Igor Grant, Douglas D Richman, Davey M Smith | AIDS (London, England) | 2016-10-27 |
| Multi-omic data integration enables discovery of hidden biological regularities. | Ali Ebrahim, Elizabeth Brunk, Justin Tan, Edward J O'Brien, Donghyuk Kim, Richard Szubin, Joshua A Lerman, Anna Lechner, Anand Sastry, Aarash Bordbar, Adam M Feist, Bernhard O Palsson | Nature Communications | 2016-10-26 |
| Prevalence and Correlates of Persistent HIV-1 RNA in Cerebrospinal Fluid During Antiretroviral Therapy. | Albert M Anderson, Jose A Muñoz-Moreno, Daniel R McClernon, Ronald J Ellis, Debra Cookson, David B Clifford, Ann C Collier, Benjamin B Gelman, Christina M Marra, Justin C McArthur, J Allen McCutchan, Susan Morgello, Ned Sacktor, David M Simpson, Donald R Franklin, Robert K Heaton, Igor Grant, Scott L Letendre, | The Journal Of Infectious Diseases | 2016-10-26 |
| Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats. | Daniel Petras, Louis-Félix Nothias, Robert A Quinn, Theodore Alexandrov, Nuno Bandeira, Amina Bouslimani, Gabriel Castro-Falcón, Liangyu Chen, Tam Dang, Dimitrios J Floros, Vivian Hook, Neha Garg, Nicole Hoffner, Yike Jiang, Clifford A Kapono, Irina Koester, Rob Knight, Christopher A Leber, Tie-Jun Ling, Tal Luzzatto-Knaan, Laura-Isobel McCall, Aaron P McGrath, Michael J Meehan, Jonathan K Merritt, Robert H Mills, Jamie Morton, Sonia Podvin, Ivan Protsyuk, Trevor Purdy, Kendall Satterfield, Stephen Searles, Sahil Shah, Sarah Shires, Dana Steffen, Margot White, Jelena Todoric, Robert Tuttle, Aneta Wojnicz, Valerie Sapp, Fernando Vargas, Jin Yang, Chao Zhang, Pieter C Dorrestein | Analytical Chemistry | 2016-10-24 |
| Cefazolin and Ertapenem, a Synergistic Combination Used To Clear Persistent Staphylococcus aureus Bacteremia. | George Sakoulas, Joshua Olson, Juwon Yim, Niedita B Singh, Monika Kumaraswamy, Diana T Quach, Michael J Rybak, Joseph Pogliano, Victor Nizet | Antimicrobial Agents And Chemotherapy | 2016-10-21 |
| Host-Microsporidia Interactions in Caenorhabditis elegans, a Model Nematode Host. | Emily R Troemel | Microbiology Spectrum | 2016-10-21 |
| Can research at the end of life be a useful tool to advance HIV cure? | Sara Gianella, Jeff Taylor, Timothy R Brown, Andy Kaytes, Cristian L Achim, David J Moore, Susan J Little, Ronald J Ellis, Davey M Smith | AIDS (London, England) | 2016-10-19 |
| Tiny microbes, enormous impacts: what matters in gut microbiome studies? | Justine Debelius, Se Jin Song, Yoshiki Vazquez-Baeza, Zhenjiang Zech Xu, Antonio Gonzalez, Rob Knight | Genome Biology | 2016-10-19 |
| Fat and vitamin intakes during pregnancy have stronger relations with a pro-inflammatory maternal microbiota than does carbohydrate intake. | Siddhartha Mandal, Keith M Godfrey, Daniel McDonald, Will V Treuren, Jørgen V Bjørnholt, Tore Midtvedt, Birgitte Moen, Knut Rudi, Rob Knight, Anne Lise Brantsæter, Shyamal D Peddada, Merete Eggesbø | Microbiome | 2016-10-19 |
| Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort. | Antonio Gonzalez, Embriette Hyde, Naseer Sangwan, Jack A Gilbert, Erik Viirre, Rob Knight | MSystems | 2016-10-18 |
| mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking. | Nicholas A Bokulich, Jai Ram Rideout, William G Mercurio, Arron Shiffer, Benjamin Wolfe, Corinne F Maurice, Rachel J Dutton, Peter J Turnbaugh, Rob Knight, J Gregory Caporaso | MSystems | 2016-10-18 |
| Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. | Erik K Kastman, Noelani Kamelamela, Josh W Norville, Casey M Cosetta, Rachel J Dutton, Benjamin E Wolfe | MBio | 2016-10-18 |
| Staphylococcus aureus Induces Increased Serine Protease Activity in Keratinocytes. | Michael R Williams, Teruaki Nakatsuji, James A Sanford, Alison F Vrbanac, Richard L Gallo | The Journal Of Investigative Dermatology | 2016-10-17 |
| RNA Editing TUTase 1: structural foundation of substrate recognition, complex interactions and drug targeting. | Lional Rajappa-Titu, Takuma Suematsu, Paola Munoz-Tello, Marius Long, Özlem Demir, Kevin J Cheng, Jason R Stagno, Hartmut Luecke, Rommie E Amaro, Inna Aphasizheva, Ruslan Aphasizhev, Stéphane Thore | Nucleic Acids Research | 2016-10-15 |
| Genetic Loss of Immunoglobulin A Does Not Influence Development of Alcoholic Steatohepatitis in Mice. | Tatsuo Inamine, An-Ming Yang, Lirui Wang, Kuei-Chuan Lee, Cristina Llorente, Bernd Schnabl | Alcoholism, Clinical And Experimental Research | 2016-10-14 |
| Skin microbiome promotes mast cell maturation by triggering stem cell factor production in keratinocytes. | Zhenping Wang, Nicholas Mascarenhas, Lars Eckmann, Yukiko Miyamoto, Xiaojun Sun, Toshiaki Kawakami, Anna Di Nardo | The Journal Of Allergy And Clinical Immunology | 2016-10-14 |
| Self-replicating shuttle vectors based on pANS, a small endogenous plasmid of the unicellular cyanobacterium Synechococcus elongatus PCC 7942. | You Chen, Arnaud Taton, Michaela Go, Ross E London, Lindsey M Pieper, Susan S Golden, James W Golden | Microbiology (Reading, England) | 2016-10-14 |
| Methodology for a vaginal and urinary microbiome study in women with mixed urinary incontinence. | Yuko M Komesu, Holly E Richter, Darrell L Dinwiddie, Nazema Y Siddiqui, Vivian W Sung, Emily S Lukacz, Beri Ridgeway, Lily A Arya, Halina M Zyczynski, Rebecca G Rogers, Marie Gantz | International Urogynecology Journal | 2016-10-13 |
| Assembly of a nucleus-like structure during viral replication in bacteria. | Vorrapon Chaikeeratisak, Katrina Nguyen, Kanika Khanna, Axel F Brilot, Marcella L Erb, Joanna K C Coker, Anastasia Vavilina, Gerald L Newton, Robert Buschauer, Kit Pogliano, Elizabeth Villa, David A Agard, Joe Pogliano | Science (New York, N.Y.) | 2016-10-13 |
| Sustained antigen availability during germinal center initiation enhances antibody responses to vaccination. | Hok Hei Tam, Mariane B Melo, Myungsun Kang, Jeisa M Pelet, Vera M Ruda, Maria H Foley, Joyce K Hu, Sudha Kumari, Jordan Crampton, Alexis D Baldeon, Rogier W Sanders, John P Moore, Shane Crotty, Robert Langer, Daniel G Anderson, Arup K Chakraborty, Darrell J Irvine | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2016-10-04 |
| (1→3)-β-d-Glucan: A Biomarker for Microbial Translocation in Individuals with Acute or Early HIV Infection? | Martin Hoenigl, Josué Pérez-Santiago, Masato Nakazawa, Michelli Faria de Oliveira, Yonglong Zhang, Malcolm A Finkelman, Scott Letendre, Davey Smith, Sara Gianella | Frontiers In Immunology | 2016-10-03 |
| Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks. | Yoshiki Vázquez-Baeza, Embriette R Hyde, Jan S Suchodolski, Rob Knight | Nature Microbiology | 2016-10-03 |
| Human milk oligosaccharides and development of cow's milk allergy in infants. | Antti E Seppo, Chloe A Autran, Lars Bode, Kirsi M Järvinen | The Journal Of Allergy And Clinical Immunology | 2016-10-01 |
| Dynamic control of gene regulatory logic by seemingly redundant transcription factors. | Zohreh AkhavanAghdam, Joydeb Sinha, Omar P Tabbaa, Nan Hao | ELife | 2016-09-30 |
| Treating Obesity and Metabolic Syndrome with Fecal Microbiota Transplantation. | Clarisse A Marotz, Amir Zarrinpar | The Yale Journal Of Biology And Medicine | 2016-09-30 |
| Synthetic Mucus Nanobarriers for Identification of Glycan-Dependent Primary Influenza A Infection Inhibitors. | Miriam Cohen, Hooman P Senaati, Christopher J Fisher, Mia L Huang, Pascal Gagneux, Kamil Godula | ACS Central Science | 2016-09-29 |
| Enzymatic Reductive Dehalogenation Controls the Biosynthesis of Marine Bacterial Pyrroles. | Abrahim El Gamal, Vinayak Agarwal, Imran Rahman, Bradley S Moore | Journal Of The American Chemical Society | 2016-09-29 |
| Precision medicine in alcoholic and nonalcoholic fatty liver disease via modulating the gut microbiota. | Sena Bluemel, Brandon Williams, Rob Knight, Bernd Schnabl | American Journal Of Physiology. Gastrointestinal And Liver Physiology | 2016-09-29 |
| Population PK Modeling and Target Attainment Simulations to Support Dosing of Ceftaroline Fosamil in Pediatric Patients With Acute Bacterial Skin and Skin Structure Infections and Community-Acquired Bacterial Pneumonia. | Todd A Riccobene, Tatiana Khariton, William Knebel, Shampa Das, James Li, Alena Jandourek, Timothy J Carrothers, John S Bradley | Journal Of Clinical Pharmacology | 2016-09-27 |
| Culturing: Looking it up in our gut. | Clarisse Marotz, Rob Knight | Nature Microbiology | 2016-09-27 |
| Discovery of a Mosaic-Like Biosynthetic Assembly Line with a Decarboxylative Off-Loading Mechanism through a Combination of Genome Mining and Imaging. | Mahsa Mir Mohseni, Thomas Höver, Lena Barra, Marcel Kaiser, Pieter C Dorrestein, Jeroen S Dickschat, Till F Schäberle | Angewandte Chemie (International Ed. In English) | 2016-09-26 |
| Effects of field conditions on fecal microbiota. | Vanessa L Hale, Chia L Tan, Kefeng Niu, Yeqin Yang, Duoying Cui, Hongxia Zhao, Rob Knight, Katherine R Amato | Journal Of Microbiological Methods | 2016-09-26 |
| Heritable components of the human fecal microbiome are associated with visceral fat. | Michelle Beaumont, Julia K Goodrich, Matthew A Jackson, Idil Yet, Emily R Davenport, Sara Vieira-Silva, Justine Debelius, Tess Pallister, Massimo Mangino, Jeroen Raes, Rob Knight, Andrew G Clark, Ruth E Ley, Tim D Spector, Jordana T Bell | Genome Biology | 2016-09-26 |
| FBB: a fast Bayesian-bound tool to calibrate RNA-seq aligners. | Irene Rodriguez-Lujan, Jeff Hasty, Ramón Huerta | Bioinformatics (Oxford, England) | 2016-09-23 |
| Multi-omics Quantification of Species Variation of Escherichia coli Links Molecular Features with Strain Phenotypes. | Jonathan M Monk, Anna Koza, Miguel A Campodonico, Daniel Machado, Jose Miguel Seoane, Bernhard O Palsson, Markus J Herrgård, Adam M Feist | Cell Systems | 2016-09-22 |
| Enteric Micromotor Can Selectively Position and Spontaneously Propel in the Gastrointestinal Tract. | Jinxing Li, Soracha Thamphiwatana, Wenjuan Liu, Berta Esteban-Fernández de Ávila, Pavimol Angsantikul, Elodie Sandraz, Jianxing Wang, Tailin Xu, Fernando Soto, Valentin Ramez, Xiaolei Wang, Weiwei Gao, Liangfang Zhang, Joseph Wang | ACS Nano | 2016-09-22 |
| Overcoming the limited availability of human milk oligosaccharides: challenges and opportunities for research and application. | Lars Bode, Nikhat Contractor, Daniela Barile, Nicola Pohl, Anthony R Prudden, Geert-Jan Boons, Yong-Su Jin, Stefan Jennewein | Nutrition Reviews | 2016-09-17 |
| Leveraging premalignant biology for immune-based cancer prevention. | Avrum Spira, Mary L Disis, John T Schiller, Eduardo Vilar, Timothy R Rebbeck, Rafael Bejar, Trey Ideker, Janine Arts, Matthew B Yurgelun, Jill P Mesirov, Anjana Rao, Judy Garber, Elizabeth M Jaffee, Scott M Lippman | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2016-09-16 |
| Microsporidia Intracellular Development Relies on Myc Interaction Network Transcription Factors in the Host. | Michael R Botts, Lianne B Cohen, Christopher S Probert, Fengting Wu, Emily R Troemel | G3 (Bethesda, Md.) | 2016-09-08 |
| Multi-species Identification of Polymorphic Peptide Variants via Propagation in Spectral Networks. | Seungjin Na, Samuel H Payne, Nuno Bandeira | Molecular & Cellular Proteomics : MCP | 2016-09-08 |
| Asymptomatic CMV Replication During Early Human Immunodeficiency Virus (HIV) Infection Is Associated With Lower CD4/CD8 Ratio During HIV Treatment. | Davey M Smith, Masato Nakazawa, Michael L Freeman, Christy M Anderson, Michelli F Oliveira, Susan J Little, Sara Gianella | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2016-09-06 |
| Coupled Biosynthesis of Volatiles and Salinosporamide A in Salinispora tropica. | Ulrike Groenhagen, Ana Ligia Leandrini De Oliveira, Elisha Fielding, Bradley S Moore, Stefan Schulz | Chembiochem : A European Journal Of Chemical Biology | 2016-09-06 |
| Streptococcus pneumoniae Senses a Human-like Sialic Acid Profile via the Response Regulator CiaR. | Karina Hentrich, Jonas Löfling, Anuj Pathak, Victor Nizet, Ajit Varki, Birgitta Henriques-Normark | Cell Host & Microbe | 2016-09-01 |
| Conservation of the C-type lectin fold for accommodating massive sequence variation in archaeal diversity-generating retroelements. | Sumit Handa, Blair G Paul, Jeffery F Miller, David L Valentine, Partho Ghosh | BMC Structural Biology | 2016-08-31 |
| Extreme Dysbiosis of the Microbiome in Critical Illness. | Daniel McDonald, Gail Ackermann, Ludmila Khailova, Christine Baird, Daren Heyland, Rosemary Kozar, Margot Lemieux, Karrie Derenski, Judy King, Christine Vis-Kampen, Rob Knight, Paul E Wischmeyer | MSphere | 2016-08-31 |
| First description of two new HIV-1 recombinant forms CRF82_cpx and CRF83_cpx among drug users in Northern Myanmar. | Xin Chen, Mei Ye, Lin Duo, Wei Pang, Davey Smith, Chiyu Zhang, Yong-Tang Zheng | Virulence | 2016-08-30 |
| A novel uncultured heterotrophic bacterial associate of the cyanobacterium Moorea producens JHB. | Susie L Cummings, Debby Barbé, Tiago Ferreira Leao, Anton Korobeynikov, Niclas Engene, Evgenia Glukhov, William H Gerwick, Lena Gerwick | BMC Microbiology | 2016-08-30 |
| Anatomy of the β-branching enzyme of polyketide biosynthesis and its interaction with an acyl-ACP substrate. | Finn P Maloney, Lena Gerwick, William H Gerwick, David H Sherman, Janet L Smith | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2016-08-29 |
| Complete Genome Sequence of a Cylindrospermopsin-Producing Cyanobacterium, Cylindrospermopsis raciborskii CS505, Containing a Circular Chromosome and a Single Extrachromosomal Element. | Juan J Fuentes-Valdés, Alvaro M Plominsky, Eric E Allen, Javier Tamames, Mónica Vásquez | Genome Announcements | 2016-08-25 |
| Small secreted proteins enable biofilm development in the cyanobacterium Synechococcus elongatus. | Rami Parnasa, Elad Nagar, Eleonora Sendersky, Ziv Reich, Ryan Simkovsky, Susan Golden, Rakefet Schwarz | Scientific Reports | 2016-08-25 |
| A Combined Computational and Genetic Approach Uncovers Network Interactions of the Cyanobacterial Circadian Clock. | Joseph S Boyd, Ryan R Cheng, Mark L Paddock, Cigdem Sancar, Faruck Morcos, Susan S Golden | Journal Of Bacteriology | 2016-08-25 |
| Precancer Atlas to Drive Precision Prevention Trials. | Avrum Spira, Matthew B Yurgelun, Ludmil Alexandrov, Anjana Rao, Rafael Bejar, Kornelia Polyak, Marios Giannakis, Ali Shilatifard, Olivera J Finn, Madhav Dhodapkar, Neil E Kay, Esteban Braggio, Eduardo Vilar, Sarah A Mazzilli, Timothy R Rebbeck, Judy E Garber, Victor E Velculescu, Mary L Disis, Douglas C Wallace, Scott M Lippman | Cancer Research | 2016-08-24 |
| Diagnostic Test Accuracy of a 2-Transcript Host RNA Signature for Discriminating Bacterial vs Viral Infection in Febrile Children. | Jethro A Herberg, Myrsini Kaforou, Victoria J Wright, Hannah Shailes, Hariklia Eleftherohorinou, Clive J Hoggart, Miriam Cebey-López, Michael J Carter, Victoria A Janes, Stuart Gormley, Chisato Shimizu, Adriana H Tremoulet, Anouk M Barendregt, Antonio Salas, John Kanegaye, Andrew J Pollard, Saul N Faust, Sanjay Patel, Taco Kuijpers, Federico Martinón-Torres, Jane C Burns, Lachlan J M Coin, Michael Levin, | JAMA | 2016-08-24 |
| HIV Trafficking Between Blood and Semen During Early Untreated HIV Infection. | Antoine Chaillon, Davey M Smith, Christophe Vanpouille, Andrea Lisco, Parris Jordan, Gemma Caballero, Milenka Vargas, Sara Gianella, Sanjay R Mehta | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2016-08-23 |
| Cell-to-cell spread of microsporidia causes Caenorhabditis elegans organs to form syncytia. | Keir M Balla, Robert J Luallen, Malina A Bakowski, Emily R Troemel | Nature Microbiology | 2016-08-22 |
| Divergent biosynthesis yields a cytotoxic aminomalonate-containing precolibactin. | Zhong-Rui Li, Jie Li, Jin-Ping Gu, Jennifer Y H Lai, Brendan M Duggan, Wei-Peng Zhang, Zhi-Long Li, Yong-Xin Li, Rong-Biao Tong, Ying Xu, Dong-Hai Lin, Bradley S Moore, Pei-Yuan Qian | Nature Chemical Biology | 2016-08-22 |
| IL-1β is an innate immune sensor of microbial proteolysis. | Christopher N LaRock, Jordan Todd, Doris L LaRock, Joshua Olson, Anthony J O'Donoghue, Avril A B Robertson, Matthew A Cooper, Hal M Hoffman, Victor Nizet | Science Immunology | 2016-08-19 |
| Comparison of Collection Methods for Fecal Samples for Discovery Metabolomics in Epidemiologic Studies. | Erikka Loftfield, Emily Vogtmann, Joshua N Sampson, Steven C Moore, Heidi Nelson, Rob Knight, Nicholas Chia, Rashmi Sinha | Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology | 2016-08-19 |
| Prevalence and genetic diversity of Blastocystis in family units living in the United States. | Pauline D Scanlan, Rob Knight, Se Jin Song, Gail Ackermann, Paul D Cotter | Infection, Genetics And Evolution : Journal Of Molecular Epidemiology And Evolutionary Genetics In Infectious Diseases | 2016-08-18 |
| First Appearance of HIV-1 CRF07_BC and CRF08_BC Outside China. | Xin Chen, Mei Ye, Wei Pang, Davey M Smith, Chiyu Zhang, Yong-Tang Zheng | AIDS Research And Human Retroviruses | 2016-08-16 |
| Ectopic Tertiary Lymphoid Tissue in Inflammatory Bowel Disease: Protective or Provocateur? | Eóin N McNamee, Jesús Rivera-Nieves | Frontiers In Immunology | 2016-08-16 |
| HIV- and AIDS-associated neurocognitive functioning in Zambia - a perspective based on differences between the genders. | Norma Kabuba, J Anitha Menon, Donald R Franklin, Robert K Heaton, Knut A Hestad | Neuropsychiatric Disease And Treatment | 2016-08-11 |
| Coiled-coil destabilizing residues in the group A Streptococcus M1 protein are required for functional interaction. | Chelsea M Stewart, Cosmo Z Buffalo, J Andrés Valderrama, Anna Henningham, Jason N Cole, Victor Nizet, Partho Ghosh | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2016-08-10 |
| Terrestrial Scavenging of Marine Mammals: Cross-Ecosystem Contaminant Transfer and Potential Risks to Endangered California Condors (Gymnogyps californianus). | Carolyn M Kurle, Victoria J Bakker, Holly Copeland, Joe Burnett, Jennie Jones Scherbinski, Joseph Brandt, Myra E Finkelstein | Environmental Science & Technology | 2016-08-08 |
| p62/SQSTM1-Dr. Jekyll and Mr. Hyde that prevents oxidative stress but promotes liver cancer. | Koji Taniguchi, Shinichiro Yamachika, Feng He, Michael Karin | FEBS Letters | 2016-08-06 |
| Direct Probing of Germinal Center Responses Reveals Immunological Features and Bottlenecks for Neutralizing Antibody Responses to HIV Env Trimer. | Colin Havenar-Daughton, Diane G Carnathan, Alba Torrents de la Peña, Matthias Pauthner, Bryan Briney, Samantha M Reiss, Jennifer S Wood, Kirti Kaushik, Marit J van Gils, Sandy L Rosales, Patricia van der Woude, Michela Locci, Khoa M Le, Steven W de Taeye, Devin Sok, Ata Ur Rasheed Mohammed, Jessica Huang, Sanjeev Gumber, AnaPatricia Garcia, Sudhir P Kasturi, Bali Pulendran, John P Moore, Rafi Ahmed, Grégory Seumois, Dennis R Burton, Rogier W Sanders, Guido Silvestri, Shane Crotty | Cell Reports | 2016-08-05 |
| Evaluation of the urinary microbiota of women with uncomplicated stress urinary incontinence. | Krystal J Thomas-White, Stephanie Kliethermes, Leslie Rickey, Emily S Lukacz, Holly E Richter, Pamela Moalli, Philippe Zimmern, Peggy Norton, John W Kusek, Alan J Wolfe, Linda Brubaker, | American Journal Of Obstetrics And Gynecology | 2016-08-04 |
| A Co-Drug of Butyric Acid Derived from Fermentation Metabolites of the Human Skin Microbiome Stimulates Adipogenic Differentiation of Adipose-Derived Stem Cells: Implications in Tissue Augmentation. | Yanhan Wang, Lingjuan Zhang, Jinghua Yu, Stephen Huang, Zhenping Wang, Kimberly Ann Chun, Tammy Ling Lee, Ying-Tung Chen, Richard L Gallo, Chun-Ming Huang | The Journal Of Investigative Dermatology | 2016-08-04 |
| Compartmentalized HIV rebound in the central nervous system after interruption of antiretroviral therapy. | Sara Gianella, Sergei L Kosakovsky Pond, Michelli F Oliveira, Konrad Scheffler, Matt C Strain, Antonio De la Torre, Scott Letendre, Davey M Smith, Ronald J Ellis | Virus Evolution | 2016-08-03 |
| Longitudinal Metagenomic Analysis of Hospital Air Identifies Clinically Relevant Microbes. | Paula King, Long K Pham, Shannon Waltz, Dan Sphar, Robert T Yamamoto, Douglas Conrad, Randy Taplitz, Francesca Torriani, R Allyn Forsyth | PloS One | 2016-08-02 |
| A miR-155-Peli1-c-Rel pathway controls the generation and function of T follicular helper cells. | Wen-Hsien Liu, Seung Goo Kang, Zhe Huang, Cheng-Jang Wu, Hyun Yong Jin, Christian J Maine, Yi Liu, Jovan Shepherd, Mohsen Sabouri-Ghomi, Alicia Gonzalez-Martin, Shunbin Xu, Alexander Hoffmann, Ye Zheng, Li-Fan Lu, Nengming Xiao, Guo Fu, Changchun Xiao | The Journal Of Experimental Medicine | 2016-08-01 |
| Natural Products and the Gene Cluster Revolution. | Paul R Jensen | Trends In Microbiology | 2016-08-01 |
| Microbial diversity in individuals and their household contacts following typical antibiotic courses. | Shira R Abeles, Marcus B Jones, Tasha M Santiago-Rodriguez, Melissa Ly, Niels Klitgord, Shibu Yooseph, Karen E Nelson, David T Pride | Microbiome | 2016-07-30 |
| Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond. | Wesley C Van Voorhis, John H Adams, Roberto Adelfio, Vida Ahyong, Myles H Akabas, Pietro Alano, Aintzane Alday, Yesmalie Alemán Resto, Aishah Alsibaee, Ainhoa Alzualde, Katherine T Andrews, Simon V Avery, Vicky M Avery, Lawrence Ayong, Mark Baker, Stephen Baker, Choukri Ben Mamoun, Sangeeta Bhatia, Quentin Bickle, Lotfi Bounaadja, Tana Bowling, Jürgen Bosch, Lauren E Boucher, Fabrice F Boyom, Jose Brea, Marian Brennan, Audrey Burton, Conor R Caffrey, Grazia Camarda, Manuela Carrasquilla, Dee Carter, Maria Belen Cassera, Ken Chih-Chien Cheng, Worathad Chindaudomsate, Anthony Chubb, Beatrice L Colon, Daisy D Colón-López, Yolanda Corbett, Gregory J Crowther, Noemi Cowan, Sarah D'Alessandro, Na Le Dang, Michael Delves, Joseph L DeRisi, Alan Y Du, Sandra Duffy, Shimaa Abd El-Salam El-Sayed, Michael T Ferdig, José A Fernández Robledo, David A Fidock, Isabelle Florent, Patrick V T Fokou, Ani Galstian, Francisco Javier Gamo, Suzanne Gokool, Ben Gold, Todd Golub, Gregory M Goldgof, Rajarshi Guha, W Armand Guiguemde, Nil Gural, R Kiplin Guy, Michael A E Hansen, Kirsten K Hanson, Andrew Hemphill, Rob Hooft van Huijsduijnen, Takaaki Horii, Paul Horrocks, Tyler B Hughes, Christopher Huston, Ikuo Igarashi, Katrin Ingram-Sieber, Maurice A Itoe, Ajit Jadhav, Amornrat Naranuntarat Jensen, Laran T Jensen, Rays H Y Jiang, Annette Kaiser, Jennifer Keiser, Thomas Ketas, Sebastien Kicka, Sunyoung Kim, Kiaran Kirk, Vidya P Kumar, Dennis E Kyle, Maria Jose Lafuente, Scott Landfear, Nathan Lee, Sukjun Lee, Adele M Lehane, Fengwu Li, David Little, Liqiong Liu, Manuel Llinás, Maria I Loza, Aristea Lubar, Leonardo Lucantoni, Isabelle Lucet, Louis Maes, Dalu Mancama, Nuha R Mansour, Sandra March, Sheena McGowan, Iset Medina Vera, Stephan Meister, Luke Mercer, Jordi Mestres, Alvine N Mfopa, Raj N Misra, Seunghyun Moon, John P Moore, Francielly Morais Rodrigues da Costa, Joachim Müller, Arantza Muriana, Stephen Nakazawa Hewitt, Bakela Nare, Carl Nathan, Nathalie Narraidoo, Sujeevi Nawaratna, Kayode K Ojo, Diana Ortiz, Gordana Panic, George Papadatos, Silvia Parapini, Kailash Patra, Ngoc Pham, Sarah Prats, David M Plouffe, Sally-Ann Poulsen, Anupam Pradhan, Celia Quevedo, Ronald J Quinn, Christopher A Rice, Mohamed Abdo Rizk, Andrea Ruecker, Robert St Onge, Rafaela Salgado Ferreira, Jasmeet Samra, Natalie G Robinett, Ulrich Schlecht, Marjorie Schmitt, Filipe Silva Villela, Francesco Silvestrini, Robert Sinden, Dennis A Smith, Thierry Soldati, Andreas Spitzmüller, Serge Maximilian Stamm, David J Sullivan, William Sullivan, Sundari Suresh, Brian M Suzuki, Yo Suzuki, S Joshua Swamidass, Donatella Taramelli, Lauve R Y Tchokouaha, Anjo Theron, David Thomas, Kathryn F Tonissen, Simon Townson, Abhai K Tripathi, Valentin Trofimov, Kenneth O Udenze, Imran Ullah, Cindy Vallieres, Edgar Vigil, Joseph M Vinetz, Phat Voong Vinh, Hoan Vu, Nao-Aki Watanabe, Kate Weatherby, Pamela M White, Andrew F Wilks, Elizabeth A Winzeler, Edward Wojcik, Melanie Wree, Wesley Wu, Naoaki Yokoyama, Paul H A Zollo, Nada Abla, Benjamin Blasco, Jeremy Burrows, Benoît Laleu, Didier Leroy, Thomas Spangenberg, Timothy Wells, Paul A Willis | PLoS Pathogens | 2016-07-28 |
| Conquering Neutrophils. | Simon Döhrmann, Jason N Cole, Victor Nizet | PLoS Pathogens | 2016-07-28 |
| Bacterial colonization and succession in a newly opened hospital. | Simon Lax, Naseer Sangwan, Daniel Smith, Peter Larsen, Kim M Handley, Miles Richardson, Kristina Guyton, Monika Krezalek, Benjamin D Shogan, Jennifer Defazio, Irma Flemming, Baddr Shakhsheer, Stephen Weber, Emily Landon, Sylvia Garcia-Houchins, Jeffrey Siegel, John Alverdy, Rob Knight, Brent Stephens, Jack A Gilbert | Science Translational Medicine | 2016-07-26 |
| Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. | Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha Baranova, Shawn R Campagna, Rui Chen, John Choiniere, Stephen P Dearth, Wu-Chun Feng, Lynnette Ferguson, Geoffrey Fox, Dmitrij Frishman, Robert Grossman, Allison Heath, Roger Higdon, Mara H Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander Kel, Joseph W Kemnitz, Isaac S Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo, Amanda May, George Mias, Matthew Monroe, Elizabeth Montague, Sean Mooney, Alexey Nesvizhskii, Santosh Noronha, Gilbert Omenn, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V Smith, Todd Smith, Michael Snyder, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo, Peter Uetz, Kenneth Verheggen, Brynn H Voy, Louise Warnich, Steven W Wilhelm, Gregory Yandl | Big Data | 2016-07-23 |
| A Network of Conserved Synthetic Lethal Interactions for Exploration of Precision Cancer Therapy. | Rohith Srivas, John Paul Shen, Chih Cheng Yang, Su Ming Sun, Jianfeng Li, Andrew M Gross, James Jensen, Katherine Licon, Ana Bojorquez-Gomez, Kristin Klepper, Justin Huang, Daniel Pekin, Jia L Xu, Huwate Yeerna, Vignesh Sivaganesh, Leonie Kollenstart, Haico van Attikum, Pedro Aza-Blanc, Robert W Sobol, Trey Ideker | Molecular Cell | 2016-07-21 |
| The Microbiota, Immunoregulation, and Mental Health: Implications for Public Health. | Christopher A Lowry, David G Smith, Philip H Siebler, Dominic Schmidt, Christopher E Stamper, James E Hassell, Paula S Yamashita, James H Fox, Stefan O Reber, Lisa A Brenner, Andrew J Hoisington, Teodor T Postolache, Kerry A Kinney, Dante Marciani, Mark Hernandez, Sian M J Hemmings, Stefanie Malan-Muller, Kenneth P Wright, Rob Knight, Charles L Raison, Graham A W Rook | Current Environmental Health Reports | 2016-07-21 |
| Synchronized cycles of bacterial lysis for in vivo delivery. | M Omar Din, Tal Danino, Arthur Prindle, Matt Skalak, Jangir Selimkhanov, Kaitlin Allen, Ellixis Julio, Eta Atolia, Lev S Tsimring, Sangeeta N Bhatia, Jeff Hasty | Nature | 2016-07-20 |
| An Organic Anion Transporter 1 (OAT1)-centered Metabolic Network. | Henry C Liu, Neema Jamshidi, Yuchen Chen, Satish A Eraly, Sai Yee Cho, Vibha Bhatnagar, Wei Wu, Kevin T Bush, Ruben Abagyan, Bernhard O Palsson, Sanjay K Nigam | The Journal Of Biological Chemistry | 2016-07-20 |
| Standard vaccines increase HIV-1 transcription during antiretroviral therapy. | Christina Yek, Sara Gianella, Montserrat Plana, Pedro Castro, Konrad Scheffler, Felipe García, Marta Massanella, Davey M Smith | AIDS (London, England) | 2016-07-19 |
| Alterations in neonatal neutrophil function attributable to increased immature forms. | Marjorie Makoni, Jeffrey Eckert, H Anne Pereira, Victor Nizet, Shelley M Lawrence | Early Human Development | 2016-07-16 |
| Design of Selective Substrates and Activity-Based Probes for Hydrolase Important for Pathogenesis 1 (HIP1) from Mycobacterium tuberculosis. | Christian S Lentz, Alvaro A Ordonez, Paulina Kasperkiewicz, Florencia La Greca, Anthony J O'Donoghue, Christopher J Schulze, James C Powers, Charles S Craik, Marcin Drag, Sanjay K Jain, Matthew Bogyo | ACS Infectious Diseases | 2016-07-15 |
| Fast-Track Clearance of Bacteria from the Liver. | Cristina Llorente, Bernd Schnabl | Cell Host & Microbe | 2016-07-15 |
| Metagenomic covariation along densely sampled environmental gradients in the Red Sea. | Luke R Thompson, Gareth J Williams, Mohamed F Haroon, Ahmed Shibl, Peter Larsen, Joshua Shorenstein, Rob Knight, Ulrich Stingl | The ISME Journal | 2016-07-15 |
| Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2016 Recommendations of the International Antiviral Society-USA Panel. | Huldrych F Günthard, Michael S Saag, Constance A Benson, Carlos del Rio, Joseph J Eron, Joel E Gallant, Jennifer F Hoy, Michael J Mugavero, Paul E Sax, Melanie A Thompson, Rajesh T Gandhi, Raphael J Landovitz, Davey M Smith, Donna M Jacobsen, Paul A Volberding | JAMA | 2016-07-13 |
| Microbiology of death. | Jessica L Metcalf, David O Carter, Rob Knight | Current Biology : CB | 2016-07-13 |
| Human risk of diseases associated with red meat intake: Analysis of current theories and proposed role for metabolic incorporation of a non-human sialic acid. | Frederico Alisson-Silva, Kunio Kawanishi, Ajit Varki | Molecular Aspects Of Medicine | 2016-07-12 |
| Biomarkers of chemotaxis and inflammation in cerebrospinal fluid and serum in individuals with HIV-1 subtype C versus B. | Sergio M de Almeida, Indianara Rotta, Yanxin Jiang, Xiao Li, Sonia M Raboni, Clea E Ribeiro, Davey Smith, Michael Potter, Florin Vaida, Scott Letendre, Ronald J Ellis, | Journal Of Neurovirology | 2016-07-11 |
| Rapid Sequencing of Complete Genes from Primary HIV-1 Samples. | Melissa Laird Smith, Ben Murrell, Kemal Eren, Caroline Ignacio, Elise Landais, Steven Weaver, Pham Phung, Colleen Ludka, Lance Hepler, Gemma Caballero, Tristan Pollner, Yan Guo, Douglas Richman, , Pascal Poignard, Ellen E Paxinos, Sergei L Kosakovsky Pond, Davey M Smith | Virus Evolution | 2016-07-08 |
| Host coevolution alters the adaptive landscape of a virus. | Alita R Burmeister, Richard E Lenski, Justin R Meyer | Proceedings. Biological Sciences | 2016-07-07 |
| Model of the Ankyrin and SOCS Box Protein, ASB9, E3 Ligase Reveals a Mechanism for Dynamic Ubiquitin Transfer. | Jamie M Schiffer, Robert D Malmstrom, Jonathan Parnell, Cesar Ramirez-Sarmiento, Javiera Reyes, Rommie E Amaro, Elizabeth A Komives | Structure (London, England : 1993) | 2016-07-07 |
| Staphylococcus aureus Exploits Epidermal Barrier Defects in Atopic Dermatitis to Trigger Cytokine Expression. | Teruaki Nakatsuji, Tiffany H Chen, Aimee M Two, Kimberly A Chun, Saisindhu Narala, Raif S Geha, Tissa R Hata, Richard L Gallo | The Journal Of Investigative Dermatology | 2016-07-02 |
| Microbiota and Alcoholic Liver Disease. | Peng Chen, Yukiko Miyamoto, Magdalena Mazagova, Kuei-Chuan Lee, Lars Eckmann, Bernd Schnabl | Alcoholism, Clinical And Experimental Research | 2016-07-01 |
| The Cutaneous Microbiome and Aspects of Skin Antimicrobial Defense System Resist Acute Treatment with Topical Skin Cleansers. | Aimee M Two, Teruaki Nakatsuji, Paul F Kotol, Evangelia Arvanitidou, Laurence Du-Thumm, Tissa R Hata, Richard L Gallo | The Journal Of Investigative Dermatology | 2016-07-01 |
| Antimicrobials from human skin commensal bacteria protect against and are deficient in atopic dermatitis. | Teruaki Nakatsuji, Tiffany H Chen, Saisindhu Narala, Kimberly A Chun, Aimee M Two, Tong Yun, Faiza Shafiq, Paul F Kotol, Amina Bouslimani, Alexey V Melnik, Haythem Latif, Ji-Nu Kim, Alexandre Lockhart, Keli Artis, Gloria David, Patricia Taylor, Joanne Streib, Pieter C Dorrestein, Alex Grier, Steven R Gill, Karsten Zengler, Tissa R Hata, Donald Y M Leung, Richard L Gallo | Science Translational Medicine | 2016-06-30 |
| Discovery of a Natural Microsporidian Pathogen with a Broad Tissue Tropism in Caenorhabditis elegans. | Robert J Luallen, Aaron W Reinke, Linda Tong, Michael R Botts, Marie-Anne Félix, Emily R Troemel | PLoS Pathogens | 2016-06-30 |
| Harmonisation in study design and outcomes in paediatric antibiotic clinical trials: a systematic review. | Laura Folgori, Julia Bielicki, Beatriz Ruiz, Mark A Turner, John S Bradley, Daniel K Benjamin, Theoklis E Zaoutis, Irja Lutsar, Carlo Giaquinto, Paolo Rossi, Mike Sharland | The Lancet. Infectious Diseases | 2016-06-30 |
| The dynamics of the HIV epidemic among men who have sex with men (MSM) from 2005 to 2012 in Shenzhen, China. | Jin Zhao, Lin Chen, Antoine Chaillon, Chenli Zheng, Wende Cai, Zhengrong Yang, Guilian Li, Yongxia Gan, Xiaohui Wang, Yihong Hu, Ping Zhong, Chiyu Zhang, Davey M Smith | Scientific Reports | 2016-06-29 |
| Evolutionary inactivation of a sialidase in group B Streptococcus. | Masaya Yamaguchi, Yujiro Hirose, Masanobu Nakata, Satoshi Uchiyama, Yuka Yamaguchi, Kana Goto, Tomoko Sumitomo, Amanda L Lewis, Shigetada Kawabata, Victor Nizet | Scientific Reports | 2016-06-29 |
| Inhibition of HDAC8 and HDAC9 by microbial short-chain fatty acids breaks immune tolerance of the epidermis to TLR ligands. | James A Sanford, Ling-Juan Zhang, Michael R Williams, Jon A Gangoiti, Chun-Ming Huang, Richard L Gallo | Science Immunology | 2016-06-29 |
| The skin microbiome is different in pediatric versus adult atopic dermatitis. | Baochen Shi, Nathanael J Bangayan, Emily Curd, Patricia A Taylor, Richard L Gallo, Donald Y M Leung, Huiying Li | The Journal Of Allergy And Clinical Immunology | 2016-06-29 |
| Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease. | Timothy R Sampson, Justine W Debelius, Taren Thron, Stefan Janssen, Gauri G Shastri, Zehra Esra Ilhan, Collin Challis, Catherine E Schretter, Sandra Rocha, Viviana Gradinaru, Marie-Francoise Chesselet, Ali Keshavarzian, Kathleen M Shannon, Rosa Krajmalnik-Brown, Pernilla Wittung-Stafshede, Rob Knight, Sarkis K Mazmanian | Cell | 2016-06-29 |
| Gut Microbiome-Based Metagenomic Signature for Non-invasive Detection of Advanced Fibrosis in Human Nonalcoholic Fatty Liver Disease. | Rohit Loomba, Victor Seguritan, Weizhong Li, Tao Long, Niels Klitgord, Archana Bhatt, Parambir Singh Dulai, Cyrielle Caussy, Richele Bettencourt, Sarah K Highlander, Marcus B Jones, Claude B Sirlin, Bernd Schnabl, Lauren Brinkac, Nicholas Schork, Chi-Hua Chen, David A Brenner, William Biggs, Shibu Yooseph, J Craig Venter, Karen E Nelson | Cell Metabolism | 2016-06-28 |
| Quantification and Classification of E. coli Proteome Utilization and Unused Protein Costs across Environments. | Edward J O'Brien, Jose Utrilla, Bernhard O Palsson | PLoS Computational Biology | 2016-06-28 |
| Real-Time PCR Reveals Rapid Dissemination of Leptospira interrogans after Intraperitoneal and Conjunctival Inoculation of Hamsters. | Elsio A Wunder, Claudio P Figueira, Gisele R Santos, Kristel Lourdault, Michael A Matthias, Joseph M Vinetz, Eduardo Ramos, David A Haake, Mathieu Picardeau, Mitermayer G Dos Reis, Albert I Ko | Infection And Immunity | 2016-06-23 |
| Longitudinal Viral Dynamics in Semen During Early HIV Infection. | Sheldon R Morris, Mitchell Zhao, Davey M Smith, Milenka V Vargas, Susan J Little, Sara Gianella | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2016-06-22 |
| Increased Endovascular Staphylococcus aureus Inoculum Is the Link Between Elevated Serum Interleukin 10 Concentrations and Mortality in Patients With Bacteremia. | Warren E Rose, Sanjay K Shukla, Andrew D Berti, Mary S Hayney, Kelsey M Henriquez, Andrea Ranzoni, Matthew A Cooper, Richard A Proctor, Victor Nizet, George Sakoulas | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2016-06-22 |
| Cytokine-Independent Detection of Antigen-Specific Germinal Center T Follicular Helper Cells in Immunized Nonhuman Primates Using a Live Cell Activation-Induced Marker Technique. | Colin Havenar-Daughton, Samantha M Reiss, Diane G Carnathan, Jennifer E Wu, Kayla Kendric, Alba Torrents de la Peña, Sudhir Pai Kasturi, Jennifer M Dan, Marcella Bothwell, Rogier W Sanders, Bali Pulendran, Guido Silvestri, Shane Crotty | Journal Of Immunology (Baltimore, Md. : 1950) | 2016-06-22 |
| Role of the microbiome, probiotics, and 'dysbiosis therapy' in critical illness. | Paul E Wischmeyer, Daniel McDonald, Rob Knight | Current Opinion In Critical Care | 2016-06-22 |
| Component Analysis of Multipurpose Contact Lens Solutions To Enhance Activity against Pseudomonas aeruginosa and Staphylococcus aureus. | Leo Lin, Janie Kim, Hope Chen, Regis Kowalski, Victor Nizet | Antimicrobial Agents And Chemotherapy | 2016-06-20 |
| The mPEG-PCL Copolymer for Selective Fermentation of Staphylococcus lugdunensis Against Candida parapsilosis in the Human Microbiome. | Ming-Shan Kao, Yanhan Wang, Shinta Marito, Stephen Huang, Wan-Zhen Lin, Jon A Gangoiti, Bruce A Barshop, Choi Hyun, Woan-Ruah Lee, James A Sanford, Richard L Gallo, Yuping Ran, Wan-Tzu Chen, Chun-Jen Huang, Ming-Fa Hsieh, Chun-Ming Huang | Journal Of Microbial & Biochemical Technology | 2016-06-19 |
| Diversity, structure and convergent evolution of the global sponge microbiome. | Torsten Thomas, Lucas Moitinho-Silva, Miguel Lurgi, Johannes R Björk, Cole Easson, Carmen Astudillo-García, Julie B Olson, Patrick M Erwin, Susanna López-Legentil, Heidi Luter, Andia Chaves-Fonnegra, Rodrigo Costa, Peter J Schupp, Laura Steindler, Dirk Erpenbeck, Jack Gilbert, Rob Knight, Gail Ackermann, Jose Victor Lopez, Michael W Taylor, Robert W Thacker, Jose M Montoya, Ute Hentschel, Nicole S Webster | Nature Communications | 2016-06-16 |
| Nasal commensal Staphylococcus epidermidis counteracts influenza virus. | Hui-Wen Chen, Pei-Feng Liu, Yu-Tsueng Liu, Sherwin Kuo, Xing-Quan Zhang, Robert T Schooley, Holger Rohde, Richard L Gallo, Chun-Ming Huang | Scientific Reports | 2016-06-16 |
| The unique chemistry and biology of the piericidins. | Xuefeng Zhou, William Fenical | The Journal Of Antibiotics | 2016-06-15 |
| Differing Efficacies of Lead Group A Streptococcal Vaccine Candidates and Full-Length M Protein in Cutaneous and Invasive Disease Models. | Tania Rivera-Hernandez, Manisha Pandey, Anna Henningham, Jason Cole, Biswa Choudhury, Amanda J Cork, Christine M Gillen, Khairunnisa Abdul Ghaffar, Nicholas P West, Guido Silvestri, Michael F Good, Peter M Moyle, Istvan Toth, Victor Nizet, Michael R Batzloff, Mark J Walker | MBio | 2016-06-14 |
| Rapid Inhibition Profiling in Bacillus subtilis to Identify the Mechanism of Action of New Antimicrobials. | Anne Lamsa, Javier Lopez-Garrido, Diana Quach, Eammon P Riley, Joe Pogliano, Kit Pogliano | ACS Chemical Biology | 2016-06-14 |
| Comparative chemical genomics reveal that the spiroindolone antimalarial KAE609 (Cipargamin) is a P-type ATPase inhibitor. | Gregory M Goldgof, Jacob D Durrant, Sabine Ottilie, Edgar Vigil, Kenneth E Allen, Felicia Gunawan, Maxim Kostylev, Kiersten A Henderson, Jennifer Yang, Jake Schenken, Gregory M LaMonte, Micah J Manary, Ayako Murao, Marie Nachon, Rebecca Stanhope, Maximo Prescott, Case W McNamara, Carolyn W Slayman, Rommie E Amaro, Yo Suzuki, Elizabeth A Winzeler | Scientific Reports | 2016-06-13 |
| Increased Intrathecal Immune Activation in Virally Suppressed HIV-1 Infected Patients with Neurocognitive Impairment. | Arvid Edén, Thomas D Marcotte, Robert K Heaton, Staffan Nilsson, Henrik Zetterberg, Dietmar Fuchs, Donald Franklin, Richard W Price, Igor Grant, Scott L Letendre, Magnus Gisslén | PloS One | 2016-06-13 |
| The pediatric intestinal mucosal microbiome remains altered after clinical resolution of inflammatory and ischemic disease. | Minna M Wieck, Justine W Debelius, Ryan G Spurrier, Andrew Trecartin, Rob Knight, Tracy C Grikscheit | Surgery | 2016-06-11 |
| Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity. | Emanuele Bosi, Jonathan M Monk, Ramy K Aziz, Marco Fondi, Victor Nizet, Bernhard Ø Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2016-06-10 |
| Use of Western Neuropsychological Test Battery in Detecting HIV-Associated Neurocognitive Disorders (HAND) in Zambia. | Norma Kabuba, J Anitha Menon, Donald R Franklin, Robert K Heaton, Knut A Hestad | AIDS And Behavior | 2016-06-10 |
| Acute-on-chronic liver failure in cirrhosis. | Vicente Arroyo, Richard Moreau, Patrick S Kamath, Rajiv Jalan, Pere Ginès, Frederik Nevens, Javier Fernández, Uyen To, Guadalupe García-Tsao, Bernd Schnabl | Nature Reviews. Disease Primers | 2016-06-09 |
| Endogenous and exogenous control of gastrointestinal epithelial function: building on the legacy of Bayliss and Starling. | Kim E Barrett | The Journal Of Physiology | 2016-06-09 |
| Characterizing the multiplicity of HIV founder variants during sexual transmission among MSM. | Antoine Chaillon, Sara Gianella, Susan J Little, Gemma Caballero, Francis Barin, Sergei Kosakovsky Pond, Douglas D Richman, Davey M Smith, Sanjay R Mehta | Virus Evolution | 2016-06-08 |
| Complex Relationships Between Food, Diet, and the Microbiome. | Laura A Pace, Sheila E Crowe | Gastroenterology Clinics Of North America | 2016-06-05 |
| Status Report from the Scientific Panel on Antibiotic Use in Dermatology of the American Acne and Rosacea Society: Part 3: Current Perspectives on Skin and Soft Tissue Infections with Emphasis on Methicillin-resistant Staphylococcus aureus, Commonly Encountered Scenarios when Antibiotic Use May Not Be Needed, and Concluding Remarks on Rational Use of Antibiotics in Dermatology. | James Q Del Rosso, Ted Rosen, Diane Thiboutot, Guy F Webster, Richard L Gallo, James J Leyden, Clay Walker, George Zhanel, Lawrence Eichenfield | The Journal Of Clinical And Aesthetic Dermatology | 2016-06-01 |
| Interleukin-17A Contributes to the Control of Streptococcus pyogenes Colonization and Inflammation of the Female Genital Tract. | Alison J Carey, Jason B Weinberg, Suzanne R Dawid, Carola Venturini, Alfred K Lam, Victor Nizet, Michael G Caparon, Mark J Walker, Michael E Watson, Glen C Ulett | Scientific Reports | 2016-05-31 |
| Location, Location, Location: Five Facts about Tissue Tropism and Pathogenesis. | Laura-Isobel McCall, Jair L Siqueira-Neto, James H McKerrow | PLoS Pathogens | 2016-05-26 |
| Actinoquinolines A and B, anti-inflammatory quinoline alkaloids from a marine-derived Streptomyces sp., strain CNP975. | Hossam M Hassan, Chollaratt Boonlarppradab, William Fenical | The Journal Of Antibiotics | 2016-05-25 |
| Efficient Synergistic Single-Cell Genome Assembly. | Narjes S Movahedi, Mallory Embree, Harish Nagarajan, Karsten Zengler, Hamidreza Chitsaz | Frontiers In Bioengineering And Biotechnology | 2016-05-23 |
| Id2 reinforces TH1 differentiation and inhibits E2A to repress TFH differentiation. | Laura A Shaw, Simon Bélanger, Kyla D Omilusik, Sunglim Cho, James P Scott-Browne, J Philip Nance, John Goulding, Anna Lasorella, Li-Fan Lu, Shane Crotty, Ananda W Goldrath | Nature Immunology | 2016-05-23 |
| Iron-chelating agent desferrioxamine stimulates formation of neutrophil extracellular traps (NETs) in human blood-derived neutrophils. | Lena Völlger, Kathryn Akong-Moore, Linda Cox, Oliver Goldmann, Yanming Wang, Simon T Schäfer, Hassan Y Naim, Victor Nizet, Maren von Köckritz-Blickwede | Bioscience Reports | 2016-05-20 |
| Quorum Sensing Communication Modules for Microbial Consortia. | Spencer R Scott, Jeff Hasty | ACS Synthetic Biology | 2016-05-19 |
| Characterizing Strain Variation in Engineered E. coli Using a Multi-Omics-Based Workflow. | Elizabeth Brunk, Kevin W George, Jorge Alonso-Gutierrez, Mitchell Thompson, Edward Baidoo, George Wang, Christopher J Petzold, Douglas McCloskey, Jonathan Monk, Laurence Yang, Edward J O'Brien, Tanveer S Batth, Hector Garcia Martin, Adam Feist, Paul D Adams, Jay D Keasling, Bernhard O Palsson, Taek Soon Lee | Cell Systems | 2016-05-19 |
| The Veterans Aging Cohort Study (VACS) Index and Neurocognitive Change: A Longitudinal Study. | María J Marquine, Jessica L Montoya, Anya Umlauf, Pariya L Fazeli, Ben Gouaux, Robert K Heaton, Ronald J Ellis, Scott L Letendre, Igor Grant, David J Moore, | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2016-05-19 |
| p62, Upregulated during Preneoplasia, Induces Hepatocellular Carcinogenesis by Maintaining Survival of Stressed HCC-Initiating Cells. | Atsushi Umemura, Feng He, Koji Taniguchi, Hayato Nakagawa, Shinichiro Yamachika, Joan Font-Burgada, Zhenyu Zhong, Shankar Subramaniam, Sindhu Raghunandan, Angeles Duran, Juan F Linares, Miguel Reina-Campos, Shiori Umemura, Mark A Valasek, Ekihiro Seki, Kanji Yamaguchi, Kazuhiko Koike, Yoshito Itoh, Maria T Diaz-Meco, Jorge Moscat, Michael Karin | Cancer Cell | 2016-05-19 |
| Role of secondary metabolites in the interaction between Pseudomonas fluorescens and soil microorganisms under iron-limited conditions. | Aurélie Deveau, Harald Gross, Béatrice Palin, Samina Mehnaz, Max Schnepf, Pierre Leblond, Pieter C Dorrestein, Bertrand Aigle | FEMS Microbiology Ecology | 2016-05-18 |
| Contribution of ammonia oxidation to chemoautotrophy in Antarctic coastal waters. | Bradley B Tolar, Meredith J Ross, Natalie J Wallsgrove, Qian Liu, Lihini I Aluwihare, Brian N Popp, James T Hollibaugh | The ISME Journal | 2016-05-17 |
| ERK5 signalling rescues intestinal epithelial turnover and tumour cell proliferation upon ERK1/2 abrogation. | Petrus R de Jong, Koji Taniguchi, Alexandra R Harris, Samuel Bertin, Naoki Takahashi, Jen Duong, Alejandro D Campos, Garth Powis, Maripat Corr, Michael Karin, Eyal Raz | Nature Communications | 2016-05-17 |
| Phosphorylation of spore coat proteins by a family of atypical protein kinases. | Kim B Nguyen, Anju Sreelatha, Eric S Durrant, Javier Lopez-Garrido, Anna Muszewska, Małgorzata Dudkiewicz, Marcin Grynberg, Samantha Yee, Kit Pogliano, Diana R Tomchick, Krzysztof Pawłowski, Jack E Dixon, Vincent S Tagliabracci | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2016-05-16 |
| Immunization with a heat-killed preparation of the environmental bacterium Mycobacterium vaccae promotes stress resilience in mice. | Stefan O Reber, Philip H Siebler, Nina C Donner, James T Morton, David G Smith, Jared M Kopelman, Kenneth R Lowe, Kristen J Wheeler, James H Fox, James E Hassell, Benjamin N Greenwood, Charline Jansch, Anja Lechner, Dominic Schmidt, Nicole Uschold-Schmidt, Andrea M Füchsl, Dominik Langgartner, Frederick R Walker, Matthew W Hale, Gerardo Lopez Perez, Will Van Treuren, Antonio González, Andrea L Halweg-Edwards, Monika Fleshner, Charles L Raison, Graham A Rook, Shyamal D Peddada, Rob Knight, Christopher A Lowry | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2016-05-16 |
| Molecular dynamic study of MlaC protein in Gram-negative bacteria: conformational flexibility, solvent effect and protein-phospholipid binding. | Yu-Ming M Huang, Yinglong Miao, Jason Munguia, Leo Lin, Victor Nizet, J Andrew McCammon | Protein Science : A Publication Of The Protein Society | 2016-05-14 |
| Natural Product Anacardic Acid from Cashew Nut Shells Stimulates Neutrophil Extracellular Trap Production and Bactericidal Activity. | Andrew Hollands, Ross Corriden, Gabriela Gysler, Samira Dahesh, Joshua Olson, Syed Raza Ali, Maya T Kunkel, Ann E Lin, Stefano Forli, Alexandra C Newton, Geetha B Kumar, Bipin G Nair, J Jefferson P Perry, Victor Nizet | The Journal Of Biological Chemistry | 2016-05-13 |
| Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges. | Martin J Blaser, Zoe G Cardon, Mildred K Cho, Jeffrey L Dangl, Timothy J Donohue, Jessica L Green, Rob Knight, Mary E Maxon, Trent R Northen, Katherine S Pollard, Eoin L Brodie | MBio | 2016-05-13 |
| Host age, social group, and habitat type influence the gut microbiota of wild ring-tailed lemurs (Lemur catta). | Genevieve Bennett, Matthew Malone, Michelle L Sauther, Frank P Cuozzo, Bryan White, Karen E Nelson, Rebecca M Stumpf, Rob Knight, Steven R Leigh, Katherine R Amato | American Journal Of Primatology | 2016-05-13 |
| Microsecond Molecular Dynamics Simulations of Influenza Neuraminidase Suggest a Mechanism for the Increased Virulence of Stalk-Deletion Mutants. | Jacob D Durrant, Robin M Bush, Rommie E Amaro | The Journal Of Physical Chemistry. B | 2016-05-12 |
| Epithelial-Derived Inflammation Disrupts Elastin Assembly and Alters Saccular Stage Lung Development. | John T Benjamin, Riet van der Meer, Amanda M Im, Erin J Plosa, Rinat Zaynagetdinov, Ankita Burman, Madeline E Havrilla, Linda A Gleaves, Vasiliy V Polosukhin, Gail H Deutsch, Hiromi Yanagisawa, Jeffrey M Davidson, Lawrence S Prince, Lisa R Young, Timothy S Blackwell | The American Journal Of Pathology | 2016-05-12 |
| Using HIV Sequence and Epidemiologic Data to Assess the Effect of Self-referral Testing for Acute HIV Infection on Incident Diagnoses in San Diego, California. | Sanjay R Mehta, Ben Murrell, Christy M Anderson, Sergei L Kosakovsky Pond, Joel O Wertheim, Jason A Young, Lorri Freitas, Douglas D Richman, W Chris Mathews, Konrad Scheffler, Susan J Little, Davey M Smith | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2016-05-11 |
| A Multicenter, Randomized, Observer-blinded, Active-controlled Study to Evaluate the Safety and Efficacy of Ceftaroline Versus Comparator in Pediatric Patients With Acute Bacterial Skin and Skin Structure Infection. | Bartosz Korczowski, Tinatin Antadze, Manana Giorgobiani, Martin E Stryjewski, Alena Jandourek, Alexander Smith, Tanya O'Neal, John S Bradley | The Pediatric Infectious Disease Journal | 2016-05-11 |
| Identification of Free-Living and Particle-Associated Microbial Communities Present in Hadal Regions of the Mariana Trench. | Jonathan Tarn, Logan M Peoples, Kevin Hardy, James Cameron, Douglas H Bartlett | Frontiers In Microbiology | 2016-05-09 |
| Microbial Skin Inhabitants: Friends Forever. | Pieter C Dorrestein, Richard L Gallo, Rob Knight | Cell | 2016-05-07 |
| Genome-Scale Model Reveals Metabolic Basis of Biomass Partitioning in a Model Diatom. | Jennifer Levering, Jared Broddrick, Christopher L Dupont, Graham Peers, Karen Beeri, Joshua Mayers, Alessandra A Gallina, Andrew E Allen, Bernhard O Palsson, Karsten Zengler | PloS One | 2016-05-06 |
| Turing Patterning Using Gene Circuits with Gas-Induced Degradation of Quorum Sensing Molecules. | Bartłomiej Borek, Jeff Hasty, Lev Tsimring | PloS One | 2016-05-05 |
| Gene-microbiota interactions contribute to the pathogenesis of inflammatory bowel disease. | Hiutung Chu, Arya Khosravi, Indah P Kusumawardhani, Alice H K Kwon, Anilton C Vasconcelos, Larissa D Cunha, Anne E Mayer, Yue Shen, Wei-Li Wu, Amal Kambal, Stephan R Targan, Ramnik J Xavier, Peter B Ernst, Douglas R Green, Dermot P B McGovern, Herbert W Virgin, Sarkis K Mazmanian | Science (New York, N.Y.) | 2016-05-05 |
| An Integrated Metabolomic and Genomic Mining Workflow To Uncover the Biosynthetic Potential of Bacteria. | Maria Maansson, Nikolaj G Vynne, Andreas Klitgaard, Jane L Nybo, Jette Melchiorsen, Don D Nguyen, Laura M Sanchez, Nadine Ziemert, Pieter C Dorrestein, Mikael R Andersen, Lone Gram | MSystems | 2016-05-03 |
| Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies. | Se Jin Song, Amnon Amir, Jessica L Metcalf, Katherine R Amato, Zhenjiang Zech Xu, Greg Humphrey, Rob Knight | MSystems | 2016-05-03 |
| Fibroblast growth factors 1 and 2 in cerebrospinal fluid are associated with HIV disease, methamphetamine use, and neurocognitive functioning. | Ajay R Bharti, Steven Paul Woods, Ronald J Ellis, Mariana Cherner, Debra Rosario, Michael Potter, Robert K Heaton, Ian P Everall, Eliezer Masliah, Igor Grant, Scott L Letendre | HIV/AIDS (Auckland, N.Z.) | 2016-04-29 |
| Ansalactams B-D Illustrate Further Biosynthetic Plasticity within the Ansamycin Pathway. | Tu Cam Le, Inho Yang, Yeo Joon Yoon, Sang-Jip Nam, William Fenical | Organic Letters | 2016-04-27 |
| Global Rebalancing of Cellular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution. | Jose Utrilla, Edward J O'Brien, Ke Chen, Douglas McCloskey, Jacky Cheung, Harris Wang, Dagoberto Armenta-Medina, Adam M Feist, Bernhard O Palsson | Cell Systems | 2016-04-27 |
| Stress response, gut microbial diversity and sexual signals correlate with social interactions. | Iris I Levin, David M Zonana, Bailey K Fosdick, Se Jin Song, Rob Knight, Rebecca J Safran | Biology Letters | 2016-04-27 |
| From Sample to Multi-Omics Conclusions in under 48 Hours. | Robert A Quinn, Jose A Navas-Molina, Embriette R Hyde, Se Jin Song, Yoshiki Vázquez-Baeza, Greg Humphrey, James Gaffney, Jeremiah J Minich, Alexey V Melnik, Jakob Herschend, Jeff DeReus, Austin Durant, Rachel J Dutton, Mahdieh Khosroheidari, Clifford Green, Ricardo da Silva, Pieter C Dorrestein, Rob Knight | MSystems | 2016-04-26 |
| The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions. | Philipp Engel, Waldan K Kwong, Quinn McFrederick, Kirk E Anderson, Seth Michael Barribeau, James Angus Chandler, R Scott Cornman, Jacques Dainat, Joachim R de Miranda, Vincent Doublet, Olivier Emery, Jay D Evans, Laurent Farinelli, Michelle L Flenniken, Fredrik Granberg, Juris A Grasis, Laurent Gauthier, Juliette Hayer, Hauke Koch, Sarah Kocher, Vincent G Martinson, Nancy Moran, Monica Munoz-Torres, Irene Newton, Robert J Paxton, Eli Powell, Ben M Sadd, Paul Schmid-Hempel, Regula Schmid-Hempel, Se Jin Song, Ryan S Schwarz, Dennis vanEngelsdorp, Benjamin Dainat | MBio | 2016-04-26 |
| Global microbialization of coral reefs. | Andreas F Haas, Mohamed F M Fairoz, Linda W Kelly, Craig E Nelson, Elizabeth A Dinsdale, Robert A Edwards, Steve Giles, Mark Hatay, Nao Hisakawa, Ben Knowles, Yan Wei Lim, Heather Maughan, Olga Pantos, Ty N F Roach, Savannah E Sanchez, Cynthia B Silveira, Stuart Sandin, Jennifer E Smith, Forest Rohwer | Nature Microbiology | 2016-04-25 |
| Current understanding of the human microbiome. | Jack A Gilbert, Martin J Blaser, J Gregory Caporaso, Janet K Jansson, Susan V Lynch, Rob Knight | Nature Medicine | 2016-04-24 |
| Capturing Invisible Motions in the Transition from Ground to Rare Excited States of T4 Lysozyme L99A. | Jamie M Schiffer, Victoria A Feher, Robert D Malmstrom, Roxana Sida, Rommie E Amaro | Biophysical Journal | 2016-04-21 |
| Reticulons Regulate the ER Inheritance Block during ER Stress. | Francisco Javier Piña, Tinya Fleming, Kit Pogliano, Maho Niwa | Developmental Cell | 2016-04-21 |
| Evolution of Ceftaroline-Resistant Mrsa in a Child with Cystic Fibrosis Following Repeated Antibiotic Exposure. | Christopher R Cannavino, Rodrigo E Mendes, Helio S Sader, David J Farrell, Ian A Critchley, Donald Biek, Jennifer Le, Shannon M Skochko, Ronald N Jones, John S Bradley | The Pediatric Infectious Disease Journal | 2016-04-20 |
| A Randomized, Prospective Study of Pediatric Patients With Community-acquired Pneumonia Treated With Ceftaroline Versus Ceftriaxone. | Christopher R Cannavino, Agnes Nemeth, Bartosz Korczowski, John S Bradley, Tanya O'Neal, Alena Jandourek, H David Friedland, Sheldon L Kaplan | The Pediatric Infectious Disease Journal | 2016-04-20 |
| Geography and Location Are the Primary Drivers of Office Microbiome Composition. | John Chase, Jennifer Fouquier, Mahnaz Zare, Derek L Sonderegger, Rob Knight, Scott T Kelley, Jeffrey Siegel, J Gregory Caporaso | MSystems | 2016-04-19 |
| Mutations in Novel Lipopolysaccharide Biogenesis Genes Confer Resistance to Amoebal Grazing in Synechococcus elongatus. | Ryan Simkovsky, Emily E Effner, Maria José Iglesias-Sánchez, Susan S Golden | Applied And Environmental Microbiology | 2016-04-18 |
| T Regulatory Cells Support Plasma Cell Populations in the Bone Marrow. | Arielle Glatman Zaretsky, Christoph Konradt, Fabien Dépis, James B Wing, Radhika Goenka, Daniela Gomez Atria, Jonathan S Silver, Sunglim Cho, Amaya I Wolf, William J Quinn, Julie B Engiles, Dorothy C Brown, Daniel Beiting, Jan Erikson, David Allman, Michael P Cancro, Shimon Sakaguchi, Li-Fan Lu, Christophe O Benoist, Christopher A Hunter | Cell Reports | 2016-04-15 |
| Linear Epitopes in Vaccinia Virus A27 Are Targets of Protective Antibodies Induced by Vaccination against Smallpox. | Thomas Kaever, Michael H Matho, Xiangzhi Meng, Lindsay Crickard, Andrew Schlossman, Yan Xiang, Shane Crotty, Bjoern Peters, Dirk M Zajonc | Journal Of Virology | 2016-04-14 |
| Modulation of the microbiota-gut-brain axis by probiotics in a murine model of inflammatory bowel disease. | Jacob R Emge, Kevin Huynh, Elaine N Miller, Manvir Kaur, Colin Reardon, Kim E Barrett, Mélanie G Gareau | American Journal Of Physiology. Gastrointestinal And Liver Physiology | 2016-04-07 |
| ETS2 and Twist1 promote invasiveness of Helicobacter pylori-infected gastric cancer cells by inducing Siah2. | Lopamudra Das, Shrikant Babanrao Kokate, Suvasmita Rath, Niranjan Rout, Shivaram Prasad Singh, Sheila Eileen Crowe, Asish K Mukhopadhyay, Asima Bhattacharyya | The Biochemical Journal | 2016-04-05 |
| Diversity, Productivity, and Stability of an Industrial Microbial Ecosystem. | Doruk Beyter, Pei-Zhong Tang, Scott Becker, Tony Hoang, Damla Bilgin, Yan Wei Lim, Todd C Peterson, Stephen Mayfield, Farzad Haerizadeh, Jonathan B Shurin, Vineet Bafna, Robert McBride | Applied And Environmental Microbiology | 2016-04-04 |
| Novel aspects of sialoglycan recognition by the Siglec-like domains of streptococcal SRR glycoproteins. | Barbara A Bensing, Zahra Khedri, Lingquan Deng, Hai Yu, Akraporn Prakobphol, Susan J Fisher, Xi Chen, Tina M Iverson, Ajit Varki, Paul M Sullam | Glycobiology | 2016-04-01 |
| Status Report from the Scientific Panel on Antibiotic Use in Dermatology of the American Acne and Rosacea Society: Part 1: Antibiotic Prescribing Patterns, Sources of Antibiotic Exposure, Antibiotic Consumption and Emergence of Antibiotic Resistance, Impact of Alterations in Antibiotic Prescribing, and Clinical Sequelae of Antibiotic Use. | James Q Del Rosso, Guy F Webster, Ted Rosen, Diane Thiboutot, James J Leyden, Richard Gallo, Clay Walker, George Zhanel, Lawrence Eichenfield | The Journal Of Clinical And Aesthetic Dermatology | 2016-04-01 |
| Characterization of functionally active gene fusions in human papillomavirus related oropharyngeal squamous cell carcinoma. | Theresa Guo, Daria A Gaykalova, Michael Considine, Sarah Wheelan, Aparna Pallavajjala, Justin A Bishop, William H Westra, Trey Ideker, Wayne M Koch, Zubair Khan, Elana J Fertig, Joseph A Califano | International Journal Of Cancer | 2016-03-30 |
| The Microtubule-Associated Protein Lis1 Regulates T Lymphocyte Homeostasis and Differentiation. | Soo M Ngoi, Justine M Lopez, John T Chang | Journal Of Immunology (Baltimore, Md. : 1950) | 2016-03-30 |
| Molecular epidemiology identifies HIV transmission networks associated with younger age and heterosexual exposure among Korean individuals. | Bum Sik Chin, Antoine Chaillon, Sanjay R Mehta, Joel O Wertheim, Gayeon Kim, Hyoung-Shik Shin, Davey M Smith | Journal Of Medical Virology | 2016-03-28 |
| Replication of Human Herpesviruses Is Associated with Higher HIV DNA Levels during Antiretroviral Therapy Started at Early Phases of HIV Infection. | Sara Gianella, Christy M Anderson, Susanna R Var, Michelli F Oliveira, Steven M Lada, Milenka V Vargas, Marta Massanella, Susan J Little, Douglas D Richman, Matthew C Strain, Josué Pérez-Santiago, Davey M Smith | Journal Of Virology | 2016-03-28 |
| Capture and characterization of influenza A virus from primary samples using glycan bead arrays. | Miriam Cohen, Christopher J Fisher, Mia L Huang, LeAnn L Lindsay, Magdalena Plancarte, Walter M Boyce, Kamil Godula, Pascal Gagneux | Virology | 2016-03-28 |
| Population Pharmacokinetic Assessment and Pharmacodynamic Implications of Pediatric Cefepime Dosing for Susceptible-Dose-Dependent Organisms. | Kensuke Shoji, John S Bradley, Michael D Reed, John N van den Anker, Christine Domonoske, Edmund V Capparelli | Antimicrobial Agents And Chemotherapy | 2016-03-25 |
| Modeling Method for Increased Precision and Scope of Directly Measurable Fluxes at a Genome-Scale. | Douglas McCloskey, Jamey D Young, Sibei Xu, Bernhard O Palsson, Adam M Feist | Analytical Chemistry | 2016-03-24 |
| Noise Expands the Response Range of the Bacillus subtilis Competence Circuit. | Andrew Mugler, Mark Kittisopikul, Luke Hayden, Jintao Liu, Chris H Wiggins, Gürol M Süel, Aleksandra M Walczak | PLoS Computational Biology | 2016-03-22 |
| Bacterial Evasion of Host Antimicrobial Peptide Defenses. | Jason N Cole, Victor Nizet | Microbiology Spectrum | 2016-03-22 |
| Biosynthesis of coral settlement cue tetrabromopyrrole in marine bacteria by a uniquely adapted brominase-thioesterase enzyme pair. | Abrahim El Gamal, Vinayak Agarwal, Stefan Diethelm, Imran Rahman, Michelle A Schorn, Jennifer M Sneed, Gordon V Louie, Kristen E Whalen, Tracy J Mincer, Joseph P Noel, Valerie J Paul, Bradley S Moore | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2016-03-21 |
| Haplotypes of the D-Amino Acid Oxidase Gene Are Significantly Associated with Schizophrenia and Its Neurocognitive Deficits. | Yu-Li Liu, Sheng-Chang Wang, Hai-Gwo Hwu, Cathy Shen-Jang Fann, Ueng-Cheng Yang, Wei-Chih Yang, Pei-Chun Hsu, Chien-Ching Chang, Chun-Chiang Wen, Jyy-Jih Tsai-Wu, Tzung-Jeng Hwang, Ming H Hsieh, Chen-Chung Liu, Yi-Ling Chien, Chiu-Ping Fang, Stephen V Faraone, Ming T Tsuang, Wei J Chen, Chih-Min Liu | PloS One | 2016-03-17 |
| Shedding of Hepatitis C Virus in Semen of Human Immunodeficiency Virus-Infected Men. | Samuel S Turner, Sara Gianella, Marcus J-S Yip, Wouter O van Seggelen, Robert D Gillies, Andrew L Foster, Zachary R Barbati, Davey M Smith, Daniel S Fierer | Open Forum Infectious Diseases | 2016-03-11 |
| Systems biology of the structural proteome. | Elizabeth Brunk, Nathan Mih, Jonathan Monk, Zhen Zhang, Edward J O'Brien, Spencer E Bliven, Ke Chen, Roger L Chang, Philip E Bourne, Bernhard O Palsson | BMC Systems Biology | 2016-03-11 |
| Evolution of E. coli on [U-13C]Glucose Reveals a Negligible Isotopic Influence on Metabolism and Physiology. | Troy E Sandberg, Christopher P Long, Jacqueline E Gonzalez, Adam M Feist, Maciek R Antoniewicz, Bernhard O Palsson | PloS One | 2016-03-10 |
| Fecal Microbiome in Epidemiologic Studies-Response. | Rashmi Sinha, Emily Vogtmann, Jun Chen, Amnon Amir, Jianxin Shi, Joshua Sampson, Roberto Flores, Rob Knight, Nicholas Chia | Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology | 2016-03-09 |
| Stepwise development of a cancer care delivery research study to evaluate the prevalence of virus infections in cancer patients. | Joseph M Unger, Dawn L Hershman, Kathryn B Arnold, Rohit Loomba, Rashmi Chugh, Jessica P Hwang, Mark A O'Rourke, Nishin A Bhadkamkar, Lili X Wang, Abby B Siegel, Timothy P Cooley, Jeffrey L Berenberg, Benjamin B Bridges, Scott D Ramsey | Future Oncology (London, England) | 2016-03-08 |
| Deciphering ocean carbon in a changing world. | Mary Ann Moran, Elizabeth B Kujawinski, Aron Stubbins, Rob Fatland, Lihini I Aluwihare, Alison Buchan, Byron C Crump, Pieter C Dorrestein, Sonya T Dyhrman, Nancy J Hess, Bill Howe, Krista Longnecker, Patricia M Medeiros, Jutta Niggemann, Ingrid Obernosterer, Daniel J Repeta, Jacob R Waldbauer | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2016-03-07 |
| Genetic Determinants of the Gut Microbiome in UK Twins. | Julia K Goodrich, Emily R Davenport, Michelle Beaumont, Matthew A Jackson, Rob Knight, Carole Ober, Tim D Spector, Jordana T Bell, Andrew G Clark, Ruth E Ley | Cell Host & Microbe | 2016-03-07 |
| Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence. | Robert A Quinn, Mark J A Vermeij, Aaron C Hartmann, Ines Galtier d'Auriac, Sean Benler, Andreas Haas, Steven D Quistad, Yan Wei Lim, Mark Little, Stuart Sandin, Jennifer E Smith, Pieter C Dorrestein, Forest Rohwer | Proceedings. Biological Sciences | 2016-03-04 |
| Ralstonia solanacearum lipopeptide induces chlamydospore development in fungi and facilitates bacterial entry into fungal tissues. | Joseph E Spraker, Laura M Sanchez, Tiffany M Lowe, Pieter C Dorrestein, Nancy P Keller | The ISME Journal | 2016-03-04 |
| Turning Participatory Microbiome Research into Usable Data: Lessons from the American Gut Project. | Justine W Debelius, Yoshiki Vázquez-Baeza, Daniel McDonald, Zhenjiang Xu, Elaine Wolfe, Rob Knight | Journal Of Microbiology & Biology Education | 2016-03-01 |
| Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses. | Jennifer Fouquier, Jai Ram Rideout, Evan Bolyen, John Chase, Arron Shiffer, Daniel McDonald, Rob Knight, J Gregory Caporaso, Scott T Kelley | Microbiome | 2016-02-24 |
| CXCL13 is a plasma biomarker of germinal center activity. | Colin Havenar-Daughton, Madelene Lindqvist, Antje Heit, Jennifer E Wu, Samantha M Reiss, Kayla Kendric, Simon Bélanger, Sudhir Pai Kasturi, Elise Landais, Rama S Akondy, Helen M McGuire, Marcella Bothwell, Parsia A Vagefi, Eileen Scully, , Georgia D Tomaras, Mark M Davis, Pascal Poignard, Rafi Ahmed, Bruce D Walker, Bali Pulendran, M Juliana McElrath, Daniel E Kaufmann, Shane Crotty | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2016-02-23 |
| Correlation detection strategies in microbial data sets vary widely in sensitivity and precision. | Sophie Weiss, Will Van Treuren, Catherine Lozupone, Karoline Faust, Jonathan Friedman, Ye Deng, Li Charlie Xia, Zhenjiang Zech Xu, Luke Ursell, Eric J Alm, Amanda Birmingham, Jacob A Cram, Jed A Fuhrman, Jeroen Raes, Fengzhu Sun, Jizhong Zhou, Rob Knight | The ISME Journal | 2016-02-23 |
| The REGγ-proteasome forms a regulatory circuit with IκBɛ and NFκB in experimental colitis. | Jinjin Xu, Lei Zhou, Lei Ji, Fengyuan Chen, Karen Fortmann, Kun Zhang, Qingwu Liu, Ke Li, Weicang Wang, Hao Wang, Wei Xie, Qingwei Wang, Jiang Liu, Biao Zheng, Pei Zhang, Shixia Huang, Tieliu Shi, Biaohong Zhang, Yongyan Dang, Jiwu Chen, Bert W O'Malley, Robb E Moses, Ping Wang, Lei Li, Jianru Xiao, Alexander Hoffmann, Xiaotao Li | Nature Communications | 2016-02-22 |
| Maternal HIV infection influences the microbiome of HIV-uninfected infants. | Jeffrey M Bender, Fan Li, Shoria Martelly, Erin Byrt, Vanessa Rouzier, Marguerite Leo, Nicole Tobin, Pia S Pannaraj, Helty Adisetiyo, Adrienne Rollie, Chintda Santiskulvong, Shaun Wang, Chloe Autran, Lars Bode, Daniel Fitzgerald, Louise Kuhn, Grace M Aldrovandi | Science Translational Medicine | 2016-02-19 |
| What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira. | Derrick E Fouts, Michael A Matthias, Haritha Adhikarla, Ben Adler, Luciane Amorim-Santos, Douglas E Berg, Dieter Bulach, Alejandro Buschiazzo, Yung-Fu Chang, Renee L Galloway, David A Haake, Daniel H Haft, Rudy Hartskeerl, Albert I Ko, Paul N Levett, James Matsunaga, Ariel E Mechaly, Jonathan M Monk, Ana L T Nascimento, Karen E Nelson, Bernhard Palsson, Sharon J Peacock, Mathieu Picardeau, Jessica N Ricaldi, Janjira Thaipandungpanit, Elsio A Wunder, X Frank Yang, Jun-Jie Zhang, Joseph M Vinetz | PLoS Neglected Tropical Diseases | 2016-02-18 |
| Analysis of Organic Anionic Surfactants in Fine and Coarse Fractions of Freshly Emitted Sea Spray Aerosol. | Richard E Cochran, Olga Laskina, Thilina Jayarathne, Alexander Laskin, Julia Laskin, Peng Lin, Camille Sultana, Christopher Lee, Kathryn A Moore, Christopher D Cappa, Timothy H Bertram, Kimberly A Prather, Vicki H Grassian, Elizabeth A Stone | Environmental Science & Technology | 2016-02-16 |
| ELMO1 has an essential role in the internalization of Typhimurium into enteric macrophages that impacts disease outcome. | Soumita Das, Arup Sarkar, Sarmistha Sinha Choudhury, Katherine A Owen, Victoria Castillo, Sarah Fox, Lars Eckmann, Michael R Elliott, James E Casanova, Peter B Ernst | Cellular And Molecular Gastroenterology And Hepatology | 2016-02-16 |
| X-ray structures of thioredoxin and thioredoxin reductase from Entamoeba histolytica and prevailing hypothesis of the mechanism of Auranofin action. | Derek Parsonage, Fang Sheng, Ken Hirata, Anjan Debnath, James H McKerrow, Sharon L Reed, Ruben Abagyan, Leslie B Poole, Larissa M Podust | Journal Of Structural Biology | 2016-02-12 |
| Targeting Dysbiosis for the Treatment of Liver Disease. | Gobind Anand, Amir Zarrinpar, Rohit Loomba | Seminars In Liver Disease | 2016-02-12 |
| Walls talk: Microbial biogeography of homes spanning urbanization. | Jean F Ruiz-Calderon, Humberto Cavallin, Se Jin Song, Atila Novoselac, Luis R Pericchi, Jean N Hernandez, Rafael Rios, Oralee H Branch, Henrique Pereira, Luciana C Paulino, Martin J Blaser, Rob Knight, Maria G Dominguez-Bello | Science Advances | 2016-02-12 |
| The C. elegans CCAAT-Enhancer-Binding Protein Gamma Is Required for Surveillance Immunity. | Kirthi C Reddy, Tiffany L Dunbar, Amrita M Nargund, Cole M Haynes, Emily R Troemel | Cell Reports | 2016-02-11 |
| Open-Source Sequence Clustering Methods Improve the State Of the Art. | Evguenia Kopylova, Jose A Navas-Molina, Céline Mercier, Zhenjiang Zech Xu, Frédéric Mahé, Yan He, Hong-Wei Zhou, Torbjørn Rognes, J Gregory Caporaso, Rob Knight | MSystems | 2016-02-09 |
| Cutting Edge: NFAT Transcription Factors Promote the Generation of Follicular Helper T Cells in Response to Acute Viral Infection. | Gustavo J Martinez, Joyce K Hu, Renata M Pereira, Jordan S Crampton, Susan Togher, Nicholas Bild, Shane Crotty, Anjana Rao | Journal Of Immunology (Baltimore, Md. : 1950) | 2016-02-05 |
| A phase 3, multi-center, multinational, randomized, double-blind, placebo-controlled study to evaluate the efficacy and safety of levofloxacin inhalation solution (APT-1026) in stable cystic fibrosis patients. | Patrick A Flume, Donald R VanDevanter, Elizabeth E Morgan, Michael N Dudley, Jeffery S Loutit, Scott C Bell, Eitan Kerem, Rainald Fischer, Alan R Smyth, Shawn D Aaron, Douglas Conrad, David E Geller, J Stuart Elborn | Journal Of Cystic Fibrosis : Official Journal Of The European Cystic Fibrosis Society | 2016-02-04 |
| A Bacterial Quorum-Sensing Precursor Induces Mortality in the Marine Coccolithophore, Emiliania huxleyi. | Elizabeth L Harvey, Robert W Deering, David C Rowley, Abrahim El Gamal, Michelle Schorn, Bradley S Moore, Matthew D Johnson, Tracy J Mincer, Kristen E Whalen | Frontiers In Microbiology | 2016-02-03 |
| Immunogenicity and protective efficacy of recombinant Clostridium difficile flagellar protein FliC. | Chandrabali Ghose, Ioannis Eugenis, Xingmin Sun, Adrianne N Edwards, Shonna M McBride, David T Pride, Ciarán P Kelly, David D Ho | Emerging Microbes & Infections | 2016-02-03 |
| miR-23∼27∼24 clusters control effector T cell differentiation and function. | Sunglim Cho, Cheng-Jang Wu, Tomoharu Yasuda, Leilani O Cruz, Aly Azeem Khan, Ling-Li Lin, Duc T Nguyen, Marina Miller, Hyang-Mi Lee, Ming-Ling Kuo, David H Broide, Klaus Rajewsky, Alexander Y Rudensky, Li-Fan Lu | The Journal Of Experimental Medicine | 2016-02-01 |
| Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer. | Maria G Dominguez-Bello, Kassandra M De Jesus-Laboy, Nan Shen, Laura M Cox, Amnon Amir, Antonio Gonzalez, Nicholas A Bokulich, Se Jin Song, Marina Hoashi, Juana I Rivera-Vinas, Keimari Mendez, Rob Knight, Jose C Clemente | Nature Medicine | 2016-02-01 |
| Standard susceptibility testing overlooks potent azithromycin activity and cationic peptide synergy against MDR Stenotrophomonas maltophilia. | Monika Kumaraswamy, Leo Lin, Joshua Olson, Ching-Fang Sun, Poochit Nonejuie, Ross Corriden, Simon Döhrmann, Syed Raza Ali, Deirdre Amaro, Manfred Rohde, Joe Pogliano, George Sakoulas, Victor Nizet | The Journal Of Antimicrobial Chemotherapy | 2016-01-31 |
| Colorectal Disorders in Acute Human Immunodeficiency Virus Infection: A Case Series. | Theppharit Panichsillapakit, Derek Patel, Joanne Santangelo, Douglas D Richman, Susan J Little, Davey M Smith | Open Forum Infectious Diseases | 2016-01-29 |
| Brief Report: Effect of CMV and HIV Transcription on CD57 and PD-1 T-Cell Expression During Suppressive ART. | Jennifer M Dan, Marta Massanella, Davey M Smith, Celsa A Spina, Rachel Schrier, Eric S Daar, Michael P Dube, Sheldon R Morris, Sara Gianella | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2016-01-29 |
| An Open Receptor-Binding Cavity of Hemagglutinin-Esterase-Fusion Glycoprotein from Newly-Identified Influenza D Virus: Basis for Its Broad Cell Tropism. | Hao Song, Jianxun Qi, Zahra Khedri, Sandra Diaz, Hai Yu, Xi Chen, Ajit Varki, Yi Shi, George F Gao | PLoS Pathogens | 2016-01-27 |
| Mitochondrial injury and cognitive function in HIV infection and methamphetamine use. | Susanna R Var, Tyler R C Day, Andrej Vitomirov, Davey M Smith, Virawudh Soontornniyomkij, David J Moore, Cristian L Achim, Sanjay R Mehta, Josué Pérez-Santiago | AIDS (London, England) | 2016-01-26 |
| Electronic cigarette inhalation alters innate immunity and airway cytokines while increasing the virulence of colonizing bacteria. | John H Hwang, Matthew Lyes, Katherine Sladewski, Shymaa Enany, Elisa McEachern, Denzil P Mathew, Soumita Das, Alexander Moshensky, Sagar Bapat, David T Pride, Weg M Ongkeko, Laura E Crotty Alexander | Journal Of Molecular Medicine (Berlin, Germany) | 2016-01-25 |
| Critical Role of Antimicrobial Peptide Cathelicidin for Controlling Helicobacter pylori Survival and Infection. | Lin Zhang, William K K Wu, Richard L Gallo, Evandro F Fang, Wei Hu, Thomas K W Ling, Jing Shen, Ruby L Y Chan, Lan Lu, Xiao M Luo, Ming X Li, Kam M Chan, Jun Yu, Vincent W S Wong, Siew C Ng, Sunny H Wong, Francis K L Chan, Joseph J Y Sung, Matthew T V Chan, Chi H Cho | Journal Of Immunology (Baltimore, Md. : 1950) | 2016-01-22 |
| Unusual flavoenzyme catalysis in marine bacteria. | Robin Teufel, Vinayak Agarwal, Bradley S Moore | Current Opinion In Chemical Biology | 2016-01-21 |
| Does the Intestinal Microbiota Explain Differences in the Epidemiology of Liver Disease between East and West? | Nobuhiro Nakamoto, Bernd Schnabl | Inflammatory Intestinal Diseases | 2016-01-20 |
| Epithelial Control of Gut-Associated Lymphoid Tissue Formation through p38α-Dependent Restraint of NF-κB Signaling. | Celia Caballero-Franco, Monica Guma, Min-Kyung Choo, Yasuyo Sano, Thomas Enzler, Michael Karin, Atsushi Mizoguchi, Jin Mo Park | Journal Of Immunology (Baltimore, Md. : 1950) | 2016-01-20 |
| Nested Machine Learning Facilitates Increased Sequence Content for Large-Scale Automated High Resolution Melt Genotyping. | Stephanie I Fraley, Pornpat Athamanolap, Billie J Masek, Justin Hardick, Karen C Carroll, Yu-Hsiang Hsieh, Richard E Rothman, Charlotte A Gaydos, Tza-Huei Wang, Samuel Yang | Scientific Reports | 2016-01-18 |
| Antimicrobial peptides. | Ling-Juan Zhang, Richard L Gallo | Current Biology : CB | 2016-01-15 |
| Sea Spray Aerosol Structure and Composition Using Cryogenic Transmission Electron Microscopy. | Joseph P Patterson, Douglas B Collins, Jennifer M Michaud, Jessica L Axson, Camile M Sultana, Trevor Moser, Abigail C Dommer, Jack Conner, Vicki H Grassian, M Dale Stokes, Grant B Deane, James E Evans, Michael D Burkart, Kimberly A Prather, Nathan C Gianneschi | ACS Central Science | 2016-01-15 |
| Parallel Mapping of Antibiotic Resistance Alleles in Escherichia coli. | Sophie J Weiss, Thomas J Mansell, Pooneh Mortazavi, Rob Knight, Ryan T Gill | PloS One | 2016-01-15 |
| Broadly Neutralizing Antibody Responses in a Large Longitudinal Sub-Saharan HIV Primary Infection Cohort. | Elise Landais, Xiayu Huang, Colin Havenar-Daughton, Ben Murrell, Matt A Price, Lalinda Wickramasinghe, Alejandra Ramos, Charoan B Bian, Melissa Simek, Susan Allen, Etienne Karita, William Kilembe, Shabir Lakhi, Mubiana Inambao, Anatoli Kamali, Eduard J Sanders, Omu Anzala, Vinodh Edward, Linda-Gail Bekker, Jianming Tang, Jill Gilmour, Sergei L Kosakovsky-Pond, Pham Phung, Terri Wrin, Shane Crotty, Adam Godzik, Pascal Poignard | PLoS Pathogens | 2016-01-14 |
| Unique marine derived cyanobacterial biosynthetic genes for chemical diversity. | Karin Kleigrewe, Lena Gerwick, David H Sherman, William H Gerwick | Natural Product Reports | 2016-01-14 |
| Regulation of Rac1 and Reactive Oxygen Species Production in Response to Infection of Gastrointestinal Epithelia. | Gerco den Hartog, Ranajoy Chattopadhyay, Amber Ablack, Emily H Hall, Lindsay D Butcher, Asima Bhattacharyya, Lars Eckmann, Paul R Harris, Soumita Das, Peter B Ernst, Sheila E Crowe | PLoS Pathogens | 2016-01-13 |
| The Gut Microbiome Is Altered in a Letrozole-Induced Mouse Model of Polycystic Ovary Syndrome. | Scott T Kelley, Danalea V Skarra, Alissa J Rivera, Varykina G Thackray | PloS One | 2016-01-05 |
| The Development of Genetic Modification Techniques in Intracellular Parasites and Potential Applications to Microsporidia. | Aaron W Reinke, Emily R Troemel | PLoS Pathogens | 2015-12-31 |
| High-Throughput Assay and Discovery of Small Molecules that Interrupt Malaria Transmission. | David M Plouffe, Melanie Wree, Alan Y Du, Stephan Meister, Fengwu Li, Kailash Patra, Aristea Lubar, Shinji L Okitsu, Erika L Flannery, Nobutaka Kato, Olga Tanaseichuk, Eamon Comer, Bin Zhou, Kelli Kuhen, Yingyao Zhou, Didier Leroy, Stuart L Schreiber, Christina A Scherer, Joseph Vinetz, Elizabeth A Winzeler | Cell Host & Microbe | 2015-12-31 |
| Scope and limitations of yeast as a model organism for studying human tissue-specific pathways. | Shahin Mohammadi, Baharak Saberidokht, Shankar Subramaniam, Ananth Grama | BMC Systems Biology | 2015-12-29 |
| Leucanicidin and Endophenasides Result from Methyl-Rhamnosylation by the Same Tailoring Enzymes in Kitasatospora sp. MBT66. | Changsheng Wu, Marnix H Medema, Rianne M Läkamp, Le Zhang, Pieter C Dorrestein, Young Hae Choi, Gilles P van Wezel | ACS Chemical Biology | 2015-12-24 |
| MID Max: LC-MS/MS Method for Measuring the Precursor and Product Mass Isotopomer Distributions of Metabolic Intermediates and Cofactors for Metabolic Flux Analysis Applications. | Douglas McCloskey, Jamey D Young, Sibei Xu, Bernhard O Palsson, Adam M Feist | Analytical Chemistry | 2015-12-24 |
| The Phormidolide Biosynthetic Gene Cluster: A trans-AT PKS Pathway Encoding a Toxic Macrocyclic Polyketide. | Matthew J Bertin, Alexandra Vulpanovici, Emily A Monroe, Anton Korobeynikov, David H Sherman, Lena Gerwick, William H Gerwick | Chembiochem : A European Journal Of Chemical Biology | 2015-12-23 |
| Deficiency of intestinal mucin-2 protects mice from diet-induced fatty liver disease and obesity. | Phillipp Hartmann, Caroline T Seebauer, Magdalena Mazagova, Angela Horvath, Lirui Wang, Cristina Llorente, Nissi M Varki, Katharina Brandl, Samuel B Ho, Bernd Schnabl | American Journal Of Physiology. Gastrointestinal And Liver Physiology | 2015-12-23 |
| Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys. | William Walters, Embriette R Hyde, Donna Berg-Lyons, Gail Ackermann, Greg Humphrey, Alma Parada, Jack A Gilbert, Janet K Jansson, J Gregory Caporaso, Jed A Fuhrman, Amy Apprill, Rob Knight | MSystems | 2015-12-22 |
| Anemia and Red Blood Cell Indices Predict HIV-Associated Neurocognitive Impairment in the Highly Active Antiretroviral Therapy Era. | Asha R Kallianpur, Quan Wang, Peilin Jia, Todd Hulgan, Zhongming Zhao, Scott L Letendre, Ronald J Ellis, Robert K Heaton, Donald R Franklin, Jill Barnholtz-Sloan, Ann C Collier, Christina M Marra, David B Clifford, Benjamin B Gelman, Justin C McArthur, Susan Morgello, David M Simpson, J A McCutchan, Igor Grant, | The Journal Of Infectious Diseases | 2015-12-21 |
| Natural isoforms of the Photosystem II D1 subunit differ in photoassembly efficiency of the water-oxidizing complex. | David J Vinyard, Jennifer S Sun, Javier Gimpel, Gennady M Ananyev, Stephen P Mayfield, G Charles Dismukes | Photosynthesis Research | 2015-12-19 |
| Evolution of metabolic divergence in Pseudomonas aeruginosa during long-term infection facilitates a proto-cooperative interspecies interaction. | Charlotte Frydenlund Michelsen, Seyed Mohammad Hossein Khademi, Helle Krogh Johansen, Hanne Ingmer, Pieter C Dorrestein, Lars Jelsbak | The ISME Journal | 2015-12-18 |
| A novel mutant 10Ala/Arg together with mutant 144Ser/Arg of hepatitis B virus X protein involved in hepatitis B virus-related hepatocarcinogenesis in HepG2 cell lines. | Ying Shi, Junwei Wang, Yuhe Wang, Anna Wang, Hongliang Guo, Feili Wei, Sanjay R Mehta, Stephen Espitia, Davey M Smith, Longgen Liu, Yulin Zhang, Dexi Chen | Cancer Letters | 2015-12-17 |
| Daily Eating Patterns and Their Impact on Health and Disease. | Amir Zarrinpar, Amandine Chaix, Satchidananda Panda | Trends In Endocrinology And Metabolism: TEM | 2015-12-17 |
| Euphorbia plant latex is inhabited by diverse microbial communities. | Manjula Gunawardana, Embriette R Hyde, Sean Lahmeyer, Brian L Dorsey, Taylor P La Val, Madeline Mullen, Jennifer Yoo, Rob Knight, Marc M Baum | American Journal Of Botany | 2015-12-11 |
| Microbial community assembly and metabolic function during mammalian corpse decomposition. | Jessica L Metcalf, Zhenjiang Zech Xu, Sophie Weiss, Simon Lax, Will Van Treuren, Embriette R Hyde, Se Jin Song, Amnon Amir, Peter Larsen, Naseer Sangwan, Daniel Haarmann, Greg C Humphrey, Gail Ackermann, Luke R Thompson, Christian Lauber, Alexander Bibat, Catherine Nicholas, Matthew J Gebert, Joseph F Petrosino, Sasha C Reed, Jack A Gilbert, Aaron M Lynne, Sibyl R Bucheli, David O Carter, Rob Knight | Science (New York, N.Y.) | 2015-12-10 |
| Application of bacterial cytological profiling to crude natural product extracts reveals the antibacterial arsenal of Bacillus subtilis. | Poochit Nonejuie, Rachelle M Trial, Gerald L Newton, Anne Lamsa, Varahenage Ranmali Perera, Julieta Aguilar, Wei-Ting Liu, Pieter C Dorrestein, Joe Pogliano, Kit Pogliano | The Journal Of Antibiotics | 2015-12-09 |
| The microbiome quality control project: baseline study design and future directions. | Rashmi Sinha, Christian C Abnet, Owen White, Rob Knight, Curtis Huttenhower | Genome Biology | 2015-12-09 |
| Microbiome-wide association studies link dynamic microbial consortia to disease. | Jack A Gilbert, Robert A Quinn, Justine Debelius, Zhenjiang Z Xu, James Morton, Neha Garg, Janet K Jansson, Pieter C Dorrestein, Rob Knight | Nature | 2015-12-07 |
| Can Your Microbiome Tell You What to Eat? | Jairam K P Vanamala, Rob Knight, Timothy D Spector | Cell Metabolism | 2015-12-05 |
| Generation of Induced Pluripotent Stem Cells from Mammalian Endangered Species. | Inbar Friedrich Ben-Nun, Susanne C Montague, Marlys L Houck, Oliver Ryder, Jeanne F Loring | Methods In Molecular Biology (Clifton, N.J.) | 2015-12-02 |
| Utilizing CMP-Sialic Acid Analogs to Unravel Neisseria gonorrhoeae Lipooligosaccharide-Mediated Complement Resistance and Design Novel Therapeutics. | Sunita Gulati, Ian C Schoenhofen, Dennis M Whitfield, Andrew D Cox, Jianjun Li, Frank St Michael, Evgeny V Vinogradov, Jacek Stupak, Bo Zheng, Makoto Ohnishi, Magnus Unemo, Lisa A Lewis, Rachel E Taylor, Corinna S Landig, Sandra Diaz, George W Reed, Ajit Varki, Peter A Rice, Sanjay Ram | PLoS Pathogens | 2015-12-02 |
| Pseudomonas Meningitis During Vedolizumab Therapy for Crohn's Disease. | Brigid S Boland, Parambir S Dulai, Michael Chang, William J Sandborn, Barrett G Levesque | The American Journal Of Gastroenterology | 2015-12-01 |
| Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome. | Robert A Quinn, Vanessa V Phelan, Katrine L Whiteson, Neha Garg, Barbara A Bailey, Yan Wei Lim, Douglas J Conrad, Pieter C Dorrestein, Forest L Rohwer | The ISME Journal | 2015-12-01 |
| Networks of energetic and metabolic interactions define dynamics in microbial communities. | Mallory Embree, Joanne K Liu, Mahmoud M Al-Bassam, Karsten Zengler | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2015-11-30 |
| Circulating HIV DNA Correlates With Neurocognitive Impairment in Older HIV-infected Adults on Suppressive ART. | Michelli Faria de Oliveira, Ben Murrell, Ben Murrel, Josué Pérez-Santiago, Milenka Vargas, Ronald J Ellis, Scott Letendre, Igor Grant, Davey M Smith, Steven Paul Woods, Sara Gianella | Scientific Reports | 2015-11-25 |
| The Binding Interface between Human APOBEC3F and HIV-1 Vif Elucidated by Genetic and Computational Approaches. | Christopher Richards, John S Albin, Özlem Demir, Nadine M Shaban, Elizabeth M Luengas, Allison M Land, Brett D Anderson, John R Holten, John S Anderson, Daniel A Harki, Rommie E Amaro, Reuben S Harris | Cell Reports | 2015-11-25 |
| Combined LC-MS/MS and Molecular Networking Approach Reveals New Cyanotoxins from the 2014 Cyanobacterial Bloom in Green Lake, Seattle. | Roberta Teta, Gerardo Della Sala, Evgenia Glukhov, Lena Gerwick, William H Gerwick, Alfonso Mangoni, Valeria Costantino | Environmental Science & Technology | 2015-11-24 |
| Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies. | Rashmi Sinha, Jun Chen, Amnon Amir, Emily Vogtmann, Jianxin Shi, Kristin S Inman, Roberto Flores, Joshua Sampson, Rob Knight, Nicholas Chia | Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology | 2015-11-24 |
| Phylogenetic and ecological factors impact the gut microbiota of two Neotropical primate species. | Katherine R Amato, Rodolfo Martinez-Mota, Nicoletta Righini, Melissa Raguet-Schofield, Fabiana Paola Corcione, Elisabetta Marini, Greg Humphrey, Grant Gogul, James Gaffney, Elijah Lovelace, LaShanda Williams, Albert Luong, Maria Gloria Dominguez-Bello, Rebecca M Stumpf, Bryan White, Karen E Nelson, Rob Knight, Steven R Leigh | Oecologia | 2015-11-24 |
| Highly efficient Cas9-mediated gene drive for population modification of the malaria vector mosquito Anopheles stephensi. | Valentino M Gantz, Nijole Jasinskiene, Olga Tatarenkova, Aniko Fazekas, Vanessa M Macias, Ethan Bier, Anthony A James | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2015-11-23 |
| Comparative genomics and metabolic profiling of the genus Lysobacter. | Irene de Bruijn, Xu Cheng, Victor de Jager, Ruth Gómez Expósito, Jeramie Watrous, Nrupali Patel, Joeke Postma, Pieter C Dorrestein, Donald Kobayashi, Jos M Raaijmakers | BMC Genomics | 2015-11-23 |
| HIV-1 broadly neutralizing antibody precursor B cells revealed by germline-targeting immunogen. | Joseph G Jardine, Daniel W Kulp, Colin Havenar-Daughton, Anita Sarkar, Bryan Briney, Devin Sok, Fabian Sesterhenn, June Ereño-Orbea, Oleksandr Kalyuzhniy, Isaiah Deresa, Xiaozhen Hu, Skye Spencer, Meaghan Jones, Erik Georgeson, Yumiko Adachi, Michael Kubitz, Allan C deCamp, Jean-Philippe Julien, Ian A Wilson, Dennis R Burton, Shane Crotty, William R Schief | Science (New York, N.Y.) | 2015-11-21 |
| Authors' reply to Mawer and Wilcox and Mullish and Williams. | Tim Spector, Rob Knight | BMJ (Clinical Research Ed.) | 2015-11-19 |
| Streptococcal toxins: role in pathogenesis and disease. | Timothy C Barnett, Jason N Cole, Tania Rivera-Hernandez, Anna Henningham, James C Paton, Victor Nizet, Mark J Walker | Cellular Microbiology | 2015-11-17 |
| Integrating mass spectrometry and genomics for cyanobacterial metabolite discovery. | Nathan A Moss, Matthew J Bertin, Karin Kleigrewe, Tiago F Leão, Lena Gerwick, William H Gerwick | Journal Of Industrial Microbiology & Biotechnology | 2015-11-17 |
| Posttranscriptional Regulation of Gcr1 Expression and Activity Is Crucial for Metabolic Adjustment in Response to Glucose Availability. | Munshi Azad Hossain, Julia M Claggett, Samantha R Edwards, Aishan Shi, Sara L Pennebaker, Melodyanne Y Cheng, Jeff Hasty, Tracy L Johnson | Molecular Cell | 2015-11-17 |
| Genomic insights into the evolution of hybrid isoprenoid biosynthetic gene clusters in the MAR4 marine streptomycete clade. | Kelley A Gallagher, Paul R Jensen | BMC Genomics | 2015-11-17 |
| Variable responses of human and non-human primate gut microbiomes to a Western diet. | Katherine R Amato, Carl J Yeoman, Gabriela Cerda, Christopher A Schmitt, Jennifer Danzy Cramer, Margret E Berg Miller, Andres Gomez, Trudy R Turner, Brenda A Wilson, Rebecca M Stumpf, Karen E Nelson, Bryan A White, Rob Knight, Steven R Leigh | Microbiome | 2015-11-16 |
| Microbiota Protects Mice Against Acute Alcohol-Induced Liver Injury. | Peng Chen, Yukiko Miyamoto, Magdalena Mazagova, Kuei-Chuan Lee, Lars Eckmann, Bernd Schnabl | Alcoholism, Clinical And Experimental Research | 2015-11-11 |
| Can we measure beauty? Computational evaluation of coral reef aesthetics. | Andreas F Haas, Marine Guibert, Anja Foerschner, Tim Co, Sandi Calhoun, Emma George, Mark Hatay, Elizabeth Dinsdale, Stuart A Sandin, Jennifer E Smith, Mark J A Vermeij, Ben Felts, Phillip Dustan, Peter Salamon, Forest Rohwer | PeerJ | 2015-11-10 |
| A Peptidyl-Transesterifying Type I Thioesterase in Salinamide Biosynthesis. | Lauren Ray, Kazuya Yamanaka, Bradley S Moore | Angewandte Chemie (International Ed. In English) | 2015-11-10 |
| Chemostat culture systems support diverse bacteriophage communities from human feces. | Tasha M Santiago-Rodriguez, Melissa Ly, Michelle C Daigneault, Ian H L Brown, Julie A K McDonald, Natasha Bonilla, Emma Allen Vercoe, David T Pride | Microbiome | 2015-11-09 |
| Reversible Reprogramming of Circulating Memory T Follicular Helper Cell Function during Chronic HIV Infection. | Rafael Cubas, Julien van Grevenynghe, Saintedym Wills, Lela Kardava, Brian H Santich, Clarisa M Buckner, Roshell Muir, Virginie Tardif, Carmen Nichols, Francesco Procopio, Zhong He, Talibah Metcalf, Khader Ghneim, Michela Locci, Petronella Ancuta, Jean-Pierre Routy, Lydie Trautmann, Yuxing Li, Adrian B McDermott, Rick A Koup, Constantinos Petrovas, Steven A Migueles, Mark Connors, Georgia D Tomaras, Susan Moir, Shane Crotty, Elias K Haddad | Journal Of Immunology (Baltimore, Md. : 1950) | 2015-11-06 |
| Associations of Genetically Determined Continental Ancestry With CD4+ Count and Plasma HIV-1 RNA Beyond Self-Reported Race and Ethnicity. | Sean S Brummel, Kumud K Singh, Adam X Maihofer, Mona Farhad, Min Qin, Terry Fenton, Caroline M Nievergelt, Stephen A Spector | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2015-11-05 |
| Genome-Wide Tuning of Protein Expression Levels to Rapidly Engineer Microbial Traits. | Emily F Freed, James D Winkler, Sophie J Weiss, Andrew D Garst, Vivek K Mutalik, Adam P Arkin, Rob Knight, Ryan T Gill | ACS Synthetic Biology | 2015-11-05 |
| Systems biology-guided identification of synthetic lethal gene pairs and its potential use to discover antibiotic combinations. | Ramy K Aziz, Jonathan M Monk, Robert M Lewis, Suh In Loh, Arti Mishra, Amrita Abhay Nagle, Chitkala Satyanarayana, Saravanakumar Dhakshinamoorthy, Michele Luche, Douglas B Kitchen, Kathleen A Andrews, Nicole L Fong, Howard J Li, Bernhard O Palsson, Pep Charusanti | Scientific Reports | 2015-11-04 |
| Context and the human microbiome. | Daniel McDonald, Amanda Birmingham, Rob Knight | Microbiome | 2015-11-04 |
| Penicillin Binding Protein 1 Is Important in the Compensatory Response of Staphylococcus aureus to Daptomycin-Induced Membrane Damage and Is a Potential Target for β-Lactam-Daptomycin Synergy. | Andrew D Berti, Erin Theisen, John-Demian Sauer, Poochit Nonejuie, Joshua Olson, Joseph Pogliano, George Sakoulas, Victor Nizet, Richard A Proctor, Warren E Rose | Antimicrobial Agents And Chemotherapy | 2015-11-02 |
| Comparative analysis of lipopolysaccharides of pathogenic and intermediately pathogenic Leptospira species. | Kailash P Patra, Biswa Choudhury, Michael M Matthias, Sheyenne Baga, Keya Bandyopadhya, Joseph M Vinetz | BMC Microbiology | 2015-10-30 |
| Associations between human milk oligosaccharides and infant body composition in the first 6 mo of life. | Tanya L Alderete, Chloe Autran, Benjamin E Brekke, Rob Knight, Lars Bode, Michael I Goran, David A Fields | The American Journal Of Clinical Nutrition | 2015-10-28 |
| Library preparation methodology can influence genomic and functional predictions in human microbiome research. | Marcus B Jones, Sarah K Highlander, Ericka L Anderson, Weizhong Li, Mark Dayrit, Niels Klitgord, Martin M Fabani, Victor Seguritan, Jessica Green, David T Pride, Shibu Yooseph, William Biggs, Karen E Nelson, J Craig Venter | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2015-10-28 |
| The essential gene set of a photosynthetic organism. | Benjamin E Rubin, Kelly M Wetmore, Morgan N Price, Spencer Diamond, Ryan K Shultzaberger, Laura C Lowe, Genevieve Curtin, Adam P Arkin, Adam Deutschbauer, Susan S Golden | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2015-10-27 |
| Ectopic lymphoid structures function as microniches for tumor progenitor cells in hepatocellular carcinoma. | Shlomi Finkin, Detian Yuan, Ilan Stein, Koji Taniguchi, Achim Weber, Kristian Unger, Jeffrey L Browning, Nicolas Goossens, Shigeki Nakagawa, Ganesh Gunasekaran, Myron E Schwartz, Masahiro Kobayashi, Hiromitsu Kumada, Michael Berger, Orit Pappo, Klaus Rajewsky, Yujin Hoshida, Michael Karin, Mathias Heikenwalder, Yinon Ben-Neriah, Eli Pikarsky | Nature Immunology | 2015-10-26 |
| Ion channels enable electrical communication in bacterial communities. | Arthur Prindle, Jintao Liu, Munehiro Asally, San Ly, Jordi Garcia-Ojalvo, Gürol M Süel | Nature | 2015-10-21 |
| Helicobacter pylori modulates host cell survival regulation through the serine-threonine kinase, 3-phosphoinositide dependent kinase 1 (PDK-1). | Charles C King, Marygorret Obonyo | BMC Microbiology | 2015-10-21 |
| Identification of Thiotetronic Acid Antibiotic Biosynthetic Pathways by Target-directed Genome Mining. | Xiaoyu Tang, Jie Li, Natalie Millán-Aguiñaga, Jia Jia Zhang, Ellis C O'Neill, Juan A Ugalde, Paul R Jensen, Simone M Mantovani, Bradley S Moore | ACS Chemical Biology | 2015-10-21 |
| Recognizing that the microbiome is part of the human immune system will advance treatment of both cancer and infections. | Richard L Gallo, Thomas Hultsch, Lauge Farnaes | Journal Of The American Academy Of Dermatology | 2015-10-21 |
| Handling of Drugs, Metabolites, and Uremic Toxins by Kidney Proximal Tubule Drug Transporters. | Sanjay K Nigam, Wei Wu, Kevin T Bush, Melanie P Hoenig, Roland C Blantz, Vibha Bhatnagar | Clinical Journal Of The American Society Of Nephrology : CJASN | 2015-10-21 |
| Faecal transplants. | Tim Spector, Rob Knight | BMJ (Clinical Research Ed.) | 2015-10-20 |
| Ixodes tick saliva suppresses the keratinocyte cytokine response to TLR2/TLR3 ligands during early exposure to Lyme borreliosis. | Quentin Bernard, Richard L Gallo, Benoît Jaulhac, Teruaki Nakatsuji, Benjamin Luft, Xiahoua Yang, Nathalie Boulanger | Experimental Dermatology | 2015-10-18 |
| Nocarimidazoles A and B from a Marine-Derived Actinomycete of the Genus Nocardiopsis. | Alain S Leutou, Inho Yang, Heonjoong Kang, Eun Kyung Seo, Sang-Jip Nam, William Fenical | Journal Of Natural Products | 2015-10-16 |
| Seasonal Changes in Plankton Food Web Structure and Carbon Dioxide Flux from Southern California Reservoirs. | Emily M Adamczyk, Jonathan B Shurin | PloS One | 2015-10-16 |
| Tamoxifen augments the innate immune function of neutrophils through modulation of intracellular ceramide. | Ross Corriden, Andrew Hollands, Joshua Olson, Jaclyn Derieux, Justine Lopez, John T Chang, David J Gonzalez, Victor Nizet | Nature Communications | 2015-10-13 |
| Role of Gut Microbiota in Liver Disease. | David A Brenner, Yong-Han Paik, Bernd Schnabl | Journal Of Clinical Gastroenterology | 2015-10-09 |
| Inflammasome/IL-1β Responses to Streptococcal Pathogens. | Christopher N LaRock, Victor Nizet | Frontiers In Immunology | 2015-10-08 |
| Giving Time Purpose: The Synechococcus elongatus Clock in a Broader Network Context. | Ryan K Shultzaberger, Joseph S Boyd, Spencer Diamond, Ralph J Greenspan, Susan S Golden | Annual Review Of Genetics | 2015-10-05 |
| Comparative Analysis of Cell-Associated HIV DNA Levels in Cerebrospinal Fluid and Peripheral Blood by Droplet Digital PCR. | Michelli Faria de Oliveira, Sara Gianella, Scott Letendre, Konrad Scheffler, Sergei L Kosakovsky Pond, Davey M Smith, Matt Strain, Ronald J Ellis | PloS One | 2015-10-02 |
| High Prevalence of Dyslipidemia and Insulin Resistance in HIV-infected Prepubertal African Children on Antiretroviral Therapy. | Steve Innes, Kameelah L Abdullah, Richard Haubrich, Mark F Cotton, Sara H Browne | The Pediatric Infectious Disease Journal | 2015-10-01 |
| Cell-free mitochondrial DNA in CSF is associated with early viral rebound, inflammation, and severity of neurocognitive deficits in HIV infection. | Josué Pérez-Santiago, Rachel D Schrier, Michelli F de Oliveira, Sara Gianella, Susanna R Var, Tyler R C Day, Miguel Ramirez-Gaona, Jesse D Suben, Ben Murrell, Marta Massanella, Mariana Cherner, Davey M Smith, Ronald J Ellis, Scott L Letendre, Sanjay R Mehta | Journal Of Neurovirology | 2015-10-01 |
| Orthogonal Modular Gene Repression in Escherichia coli Using Engineered CRISPR/Cas9. | Andriy Didovyk, Bartłomiej Borek, Jeff Hasty, Lev Tsimring | ACS Synthetic Biology | 2015-09-30 |
| Prevalence of Transmitted HIV Drug Resistance Among Recently Infected Persons in San Diego, CA 1996-2013. | Theppharit Panichsillapakit, Davey M Smith, Joel O Wertheim, Douglas D Richman, Susan J Little, Sanjay R Mehta | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2015-09-29 |
| Host and pathogen hyaluronan signal through human siglec-9 to suppress neutrophil activation. | Ismael Secundino, Anel Lizcano, K Markus Roupé, Xiaoxia Wang, Jason N Cole, Joshua Olson, S Raza Ali, Samira Dahesh, Lenah K Amayreh, Anna Henningham, Ajit Varki, Victor Nizet | Journal Of Molecular Medicine (Berlin, Germany) | 2015-09-28 |
| The role of the skin microbiome in atopic dermatitis. | Michael R Williams, Richard L Gallo | Current Allergy And Asthma Reports | 2015-09-26 |
| Long-term efavirenz use is associated with worse neurocognitive functioning in HIV-infected patients. | Qing Ma, Florin Vaida, Jenna Wong, Chelsea A Sanders, Yu-ting Kao, David Croteau, David B Clifford, Ann C Collier, Benjamin B Gelman, Christina M Marra, Justin C McArthur, Susan Morgello, David M Simpson, Robert K Heaton, Igor Grant, Scott L Letendre, | Journal Of Neurovirology | 2015-09-25 |
| Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse. | Clio Der Sarkissian, Luca Ermini, Mikkel Schubert, Melinda A Yang, Pablo Librado, Matteo Fumagalli, Hákon Jónsson, Gila Kahila Bar-Gal, Anders Albrechtsen, Filipe G Vieira, Bent Petersen, Aurélien Ginolhac, Andaine Seguin-Orlando, Kim Magnussen, Antoine Fages, Cristina Gamba, Belen Lorente-Galdos, Sagi Polani, Cynthia Steiner, Markus Neuditschko, Vidhya Jagannathan, Claudia Feh, Charles L Greenblatt, Arne Ludwig, Natalia I Abramson, Waltraut Zimmermann, Renate Schafberg, Alexei Tikhonov, Thomas Sicheritz-Ponten, Eske Willerslev, Tomas Marques-Bonet, Oliver A Ryder, Molly McCue, Stefan Rieder, Tosso Leeb, Montgomery Slatkin, Ludovic Orlando | Current Biology : CB | 2015-09-24 |
| Model-driven discovery of synergistic inhibitors against E. coli and S. enterica serovar Typhimurium targeting a novel synthetic lethal pair, aldA and prpC. | Ramy K Aziz, Valerie L Khaw, Jonathan M Monk, Elizabeth Brunk, Robert Lewis, Suh I Loh, Arti Mishra, Amrita A Nagle, Chitkala Satyanarayana, Saravanakumar Dhakshinamoorthy, Michele Luche, Douglas B Kitchen, Kathleen A Andrews, Bernhard Ø Palsson, Pep Charusanti | Frontiers In Microbiology | 2015-09-23 |
| HIV migration between blood plasma and cellular subsets before and after HIV therapy. | Jun Yong Choi, Antoine Chaillon, Jin Ok Oh, Jin Young Ahn, Hae Won Ann, In Young Jung, Mi-Young Ahn, Yong Duk Jeon, Nam Su Ku, Davey M Smith, June Myung Kim | Journal Of Medical Virology | 2015-09-21 |
| Single cells within the Puerto Rico trench suggest hadal adaptation of microbial lineages. | Rosa León-Zayas, Mark Novotny, Sheila Podell, Charles M Shepard, Eric Berkenpas, Sergey Nikolenko, Pavel Pevzner, Roger S Lasken, Douglas H Bartlett | Applied And Environmental Microbiology | 2015-09-18 |
| A Microfluidic Platform for Long-Term Monitoring of Algae in a Dynamic Environment. | Chung Sze Luke, Jangir Selimkhanov, Leo Baumgart, Susan E Cohen, Susan S Golden, Natalie A Cookson, Jeff Hasty | ACS Synthetic Biology | 2015-09-15 |
| The functional biology of human milk oligosaccharides. | Lars Bode | Early Human Development | 2015-09-12 |
| Circadian Rhythms in Cyanobacteria. | Susan E Cohen, Susan S Golden | Microbiology And Molecular Biology Reviews : MMBR | 2015-09-04 |
| Lysozyme-Based Antibacterial Nanomotors. | Melek Kiristi, Virendra V Singh, Berta Esteban-Fernández de Ávila, Murat Uygun, Fernando Soto, Deniz Aktaş Uygun, Joseph Wang | ACS Nano | 2015-08-31 |
| Complete genome sequence of Streptomyces sp. CNQ-509, a prolific producer of meroterpenoid chemistry. | Christian Rückert, Franziska Leipoldt, Philipp Zeyhle, William Fenical, Paul R Jensen, Jörn Kalinowski, Lutz Heide, Leonard Kaysser | Journal Of Biotechnology | 2015-08-28 |
| Extracellular RNAs: development as biomarkers of human disease. | Joseph F Quinn, Tushar Patel, David Wong, Saumya Das, Jane E Freedman, Louise C Laurent, Bob S Carter, Fred Hochberg, Kendall Van Keuren-Jensen, Matt Huentelman, Robert Spetzler, M Yashar S Kalani, Jorge Arango, P David Adelson, Howard L Weiner, Roopali Gandhi, Beatrice Goilav, Chaim Putterman, Julie A Saugstad | Journal Of Extracellular Vesicles | 2015-08-28 |
| Comparison of the seasonal variations of Synechococcus assemblage structures in estuarine waters and coastal waters of Hong Kong. | Xiaomin Xia, Nayani K Vidyarathna, Brian Palenik, Puiyin Lee, Hongbin Liu | Applied And Environmental Microbiology | 2015-08-28 |
| Diversity of Aquatic Pseudomonas Species and Their Activity against the Fish Pathogenic Oomycete Saprolegnia. | Yiying Liu, Elzbieta Rzeszutek, Menno van der Voort, Cheng-Hsuan Wu, Even Thoen, Ida Skaar, Vincent Bulone, Pieter C Dorrestein, Jos M Raaijmakers, Irene de Bruijn | PloS One | 2015-08-28 |
| Osteoarticular Infections in Children. | John C Arnold, John S Bradley | Infectious Disease Clinics Of North America | 2015-08-28 |
| Subtype associations with HIV-associated neurocognitive disorder in China. | Tyler R C Day, Davey M Smith, Robert K Heaton, Donald Franklin, Myers W Tilghman, Scott Letendre, Hua Jin, Zunyou Wu, Chuan Shi, Xin Yu, Josué Pérez-Santiago | Journal Of Neurovirology | 2015-08-26 |
| Effects of Long Term Antibiotic Therapy on Human Oral and Fecal Viromes. | Shira R Abeles, Melissa Ly, Tasha M Santiago-Rodriguez, David T Pride | PloS One | 2015-08-26 |
| Beta-Lactamase Repressor BlaI Modulates Staphylococcus aureus Cathelicidin Antimicrobial Peptide Resistance and Virulence. | Morgan A Pence, Nina M Haste, Hiruy S Meharena, Joshua Olson, Richard L Gallo, Victor Nizet, Sascha A Kristian | PloS One | 2015-08-25 |
| Maize death acids, 9-lipoxygenase-derived cyclopente(a)nones, display activity as cytotoxic phytoalexins and transcriptional mediators. | Shawn A Christensen, Alisa Huffaker, Fatma Kaplan, James Sims, Sebastian Ziemann, Gunther Doehlemann, Lexiang Ji, Robert J Schmitz, Michael V Kolomiets, Hans T Alborn, Naoki Mori, Georg Jander, Xinzhi Ni, Ryan C Sartor, Sara Byers, Zaid Abdo, Eric A Schmelz | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2015-08-24 |
| Methamphetamine Use in HIV-infected Individuals Affects T-cell Function and Viral Outcome during Suppressive Antiretroviral Therapy. | Marta Massanella, Sara Gianella, Rachel Schrier, Jennifer M Dan, Josué Pérez-Santiago, Michelli F Oliveira, Douglas D Richman, Susan J Little, Constance A Benson, Eric S Daar, Michael P Dube, Richard H Haubrich, Davey M Smith, Sheldon R Morris | Scientific Reports | 2015-08-24 |
| Homogeneous matrix deposition on dried agar for MALDI imaging mass spectrometry of microbial cultures. | Thomas Hoffmann, Pieter C Dorrestein | Journal Of The American Society For Mass Spectrometry | 2015-08-22 |
| Previously Uncultured Marine Bacteria Linked to Novel Alkaloid Production. | Eun Ju Choi, Sang-Jip Nam, Lauren Paul, Deanna Beatty, Christopher A Kauffman, Paul R Jensen, William Fenical | Chemistry & Biology | 2015-08-20 |
| Genome analysis and polar tube firing dynamics of mosquito-infecting microsporidia. | Emily R Troemel, James J Becnel | Fungal Genetics And Biology : FG & B | 2015-08-20 |
| Reply to: "CD8(+) T cell diversification by asymmetric cell division". | Janilyn Arsenio, Boyko Kakaradov, Patrick J Metz, Gene W Yeo, John T Chang | Nature Immunology | 2015-08-20 |
| Minimum Information about a Biosynthetic Gene cluster. | Marnix H Medema, Renzo Kottmann, Pelin Yilmaz, Matthew Cummings, John B Biggins, Kai Blin, Irene de Bruijn, Yit Heng Chooi, Jan Claesen, R Cameron Coates, Pablo Cruz-Morales, Srikanth Duddela, Stephanie Düsterhus, Daniel J Edwards, David P Fewer, Neha Garg, Christoph Geiger, Juan Pablo Gomez-Escribano, Anja Greule, Michalis Hadjithomas, Anthony S Haines, Eric J N Helfrich, Matthew L Hillwig, Keishi Ishida, Adam C Jones, Carla S Jones, Katrin Jungmann, Carsten Kegler, Hyun Uk Kim, Peter Kötter, Daniel Krug, Joleen Masschelein, Alexey V Melnik, Simone M Mantovani, Emily A Monroe, Marcus Moore, Nathan Moss, Hans-Wilhelm Nützmann, Guohui Pan, Amrita Pati, Daniel Petras, F Jerry Reen, Federico Rosconi, Zhe Rui, Zhenhua Tian, Nicholas J Tobias, Yuta Tsunematsu, Philipp Wiemann, Elizabeth Wyckoff, Xiaohui Yan, Grace Yim, Fengan Yu, Yunchang Xie, Bertrand Aigle, Alexander K Apel, Carl J Balibar, Emily P Balskus, Francisco Barona-Gómez, Andreas Bechthold, Helge B Bode, Rainer Borriss, Sean F Brady, Axel A Brakhage, Patrick Caffrey, Yi-Qiang Cheng, Jon Clardy, Russell J Cox, René De Mot, Stefano Donadio, Mohamed S Donia, Wilfred A van der Donk, Pieter C Dorrestein, Sean Doyle, Arnold J M Driessen, Monika Ehling-Schulz, Karl-Dieter Entian, Michael A Fischbach, Lena Gerwick, William H Gerwick, Harald Gross, Bertolt Gust, Christian Hertweck, Monica Höfte, Susan E Jensen, Jianhua Ju, Leonard Katz, Leonard Kaysser, Jonathan L Klassen, Nancy P Keller, Jan Kormanec, Oscar P Kuipers, Tomohisa Kuzuyama, Nikos C Kyrpides, Hyung-Jin Kwon, Sylvie Lautru, Rob Lavigne, Chia Y Lee, Bai Linquan, Xinyu Liu, Wen Liu, Andriy Luzhetskyy, Taifo Mahmud, Yvonne Mast, Carmen Méndez, Mikko Metsä-Ketelä, Jason Micklefield, Douglas A Mitchell, Bradley S Moore, Leonilde M Moreira, Rolf Müller, Brett A Neilan, Markus Nett, Jens Nielsen, Fergal O'Gara, Hideaki Oikawa, Anne Osbourn, Marcia S Osburne, Bohdan Ostash, Shelley M Payne, Jean-Luc Pernodet, Miroslav Petricek, Jörn Piel, Olivier Ploux, Jos M Raaijmakers, José A Salas, Esther K Schmitt, Barry Scott, Ryan F Seipke, Ben Shen, David H Sherman, Kaarina Sivonen, Michael J Smanski, Margherita Sosio, Evi Stegmann, Roderich D Süssmuth, Kapil Tahlan, Christopher M Thomas, Yi Tang, Andrew W Truman, Muriel Viaud, Jonathan D Walton, Christopher T Walsh, Tilmann Weber, Gilles P van Wezel, Barrie Wilkinson, Joanne M Willey, Wolfgang Wohlleben, Gerard D Wright, Nadine Ziemert, Changsheng Zhang, Sergey B Zotchev, Rainer Breitling, Eriko Takano, Frank Oliver Glöckner | Nature Chemical Biology | 2015-08-19 |
| Breast Milk of HIV-Positive Mothers Has Potent and Species-Specific In Vivo HIV-Inhibitory Activity. | Angela Wahl, Caroline Baker, Rae Ann Spagnuolo, Lisa W Stamper, Genevieve G Fouda, Sallie R Permar, Katie Hinde, Louise Kuhn, Lars Bode, Grace M Aldrovandi, J Victor Garcia | Journal Of Virology | 2015-08-19 |
| Changes in vaginal microbiota following antimicrobial and probiotic therapy. | Jean M Macklaim, Jose C Clemente, Rob Knight, Gregory B Gloor, Gregor Reid | Microbial Ecology In Health And Disease | 2015-08-14 |
| Genome-Directed Lead Discovery: Biosynthesis, Structure Elucidation, and Biological Evaluation of Two Families of Polyene Macrolactams against Trypanosoma brucei. | Christopher J Schulze, Mohamed S Donia, Jair L Siqueira-Neto, Debalina Ray, Jevgenij A Raskatov, Richard E Green, James H McKerrow, Michael A Fischbach, Roger G Linington | ACS Chemical Biology | 2015-08-13 |
| Genome-wide Reconstruction of OxyR and SoxRS Transcriptional Regulatory Networks under Oxidative Stress in Escherichia coli K-12 MG1655. | Sang Woo Seo, Donghyuk Kim, Richard Szubin, Bernhard O Palsson | Cell Reports | 2015-08-13 |
| The Hybrid Pyrroloisoindolone-Dehydropyrrolizine Alkaloid (-)-Chlorizidine A Targets Proteins within the Glycolytic Pathway. | Xavier Álvarez-Micó, Danilo D Rocha, Larissa A Guimarães, Andrew Ambrose, Eli Chapman, Leticia V Costa-Lotufo, James J La Clair, William Fenical | Chembiochem : A European Journal Of Chemical Biology | 2015-08-12 |
| Intestinal REG3 Lectins Protect against Alcoholic Steatohepatitis by Reducing Mucosa-Associated Microbiota and Preventing Bacterial Translocation. | Lirui Wang, Derrick E Fouts, Peter Stärkel, Phillipp Hartmann, Peng Chen, Cristina Llorente, Jessica DePew, Kelvin Moncera, Samuel B Ho, David A Brenner, Lora V Hooper, Bernd Schnabl | Cell Host & Microbe | 2015-08-12 |
| Gluten Introduction, Breastfeeding, and Celiac Disease: Back to the Drawing Board. | Benjamin Lebwohl, Joseph A Murray, Elena F Verdú, Sheila E Crowe, Melinda Dennis, Alessio Fasano, Peter H R Green, Stefano Guandalini, Chaitan Khosla | The American Journal Of Gastroenterology | 2015-08-11 |
| Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. | Mingxun Wang, Jeremy J Carver, Vanessa V Phelan, Laura M Sanchez, Neha Garg, Yao Peng, Don Duy Nguyen, Jeramie Watrous, Clifford A Kapono, Tal Luzzatto-Knaan, Carla Porto, Amina Bouslimani, Alexey V Melnik, Michael J Meehan, Wei-Ting Liu, Max Crüsemann, Paul D Boudreau, Eduardo Esquenazi, Mario Sandoval-Calderón, Roland D Kersten, Laura A Pace, Robert A Quinn, Katherine R Duncan, Cheng-Chih Hsu, Dimitrios J Floros, Ronnie G Gavilan, Karin Kleigrewe, Trent Northen, Rachel J Dutton, Delphine Parrot, Erin E Carlson, Bertrand Aigle, Charlotte F Michelsen, Lars Jelsbak, Christian Sohlenkamp, Pavel Pevzner, Anna Edlund, Jeffrey McLean, Jörn Piel, Brian T Murphy, Lena Gerwick, Chih-Chuang Liaw, Yu-Liang Yang, Hans-Ulrich Humpf, Maria Maansson, Robert A Keyzers, Amy C Sims, Andrew R Johnson, Ashley M Sidebottom, Brian E Sedio, Andreas Klitgaard, Charles B Larson, Cristopher A Boya P, Daniel Torres-Mendoza, David J Gonzalez, Denise B Silva, Lucas M Marques, Daniel P Demarque, Egle Pociute, Ellis C O'Neill, Enora Briand, Eric J N Helfrich, Eve A Granatosky, Evgenia Glukhov, Florian Ryffel, Hailey Houson, Hosein Mohimani, Jenan J Kharbush, Yi Zeng, Julia A Vorholt, Kenji L Kurita, Pep Charusanti, Kerry L McPhail, Kristian Fog Nielsen, Lisa Vuong, Maryam Elfeki, Matthew F Traxler, Niclas Engene, Nobuhiro Koyama, Oliver B Vining, Ralph Baric, Ricardo R Silva, Samantha J Mascuch, Sophie Tomasi, Stefan Jenkins, Venkat Macherla, Thomas Hoffman, Vinayak Agarwal, Philip G Williams, Jingqui Dai, Ram Neupane, Joshua Gurr, Andrés M C Rodríguez, Anne Lamsa, Chen Zhang, Kathleen Dorrestein, Brendan M Duggan, Jehad Almaliti, Pierre-Marie Allard, Prasad Phapale, Louis-Felix Nothias, Theodore Alexandrov, Marc Litaudon, Jean-Luc Wolfender, Jennifer E Kyle, Thomas O Metz, Tyler Peryea, Dac-Trung Nguyen, Danielle VanLeer, Paul Shinn, Ajit Jadhav, Rolf Müller, Katrina M Waters, Wenyuan Shi, Xueting Liu, Lixin Zhang, Rob Knight, Paul R Jensen, Bernhard O Palsson, Kit Pogliano, Roger G Linington, Marcelino Gutiérrez, Norberto P Lopes, William H Gerwick, Bradley S Moore, Pieter C Dorrestein, Nuno Bandeira | Nature Biotechnology | 2015-08-11 |
| Reparative inflammation takes charge of tissue regeneration. | Michael Karin, Hans Clevers | Nature | 2015-08-11 |
| Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data. | Laurence Yang, Justin Tan, Edward J O'Brien, Jonathan M Monk, Donghyuk Kim, Howard J Li, Pep Charusanti, Ali Ebrahim, Colton J Lloyd, James T Yurkovich, Bin Du, Andreas Dräger, Alex Thomas, Yuekai Sun, Michael A Saunders, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2015-08-10 |
| Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli. | Sang Woo Seo, Donghyuk Kim, Edward J O'Brien, Richard Szubin, Bernhard O Palsson | Nature Communications | 2015-08-10 |
| Genetic and environmental control of host-gut microbiota interactions. | Elin Org, Brian W Parks, Jong Wha J Joo, Benjamin Emert, William Schwartzman, Eun Yong Kang, Margarete Mehrabian, Calvin Pan, Rob Knight, Robert Gunsalus, Thomas A Drake, Eleazar Eskin, Aldons J Lusis | Genome Research | 2015-08-10 |
| The gut microbiota in human energy homeostasis and obesity. | Michael Rosenbaum, Rob Knight, Rudolph L Leibel | Trends In Endocrinology And Metabolism: TEM | 2015-08-07 |
| Molecular and chemical dialogues in bacteria-protozoa interactions. | Chunxu Song, Mark Mazzola, Xu Cheng, Janina Oetjen, Theodore Alexandrov, Pieter Dorrestein, Jeramie Watrous, Menno van der Voort, Jos M Raaijmakers | Scientific Reports | 2015-08-06 |
| Online analysis of single cyanobacteria and algae cells under nitrogen-limited conditions using aerosol time-of-flight mass spectrometry. | John F Cahill, Thomas K Darlington, Christine Fitzgerald, Nathan G Schoepp, Joris Beld, Michael D Burkart, Kimberly A Prather | Analytical Chemistry | 2015-08-06 |
| Bastimolide A, a Potent Antimalarial Polyhydroxy Macrolide from the Marine Cyanobacterium Okeania hirsuta. | Chang-Lun Shao, Roger G Linington, Marcy J Balunas, Argelis Centeno, Paul Boudreau, Chen Zhang, Niclas Engene, Carmenza Spadafora, Tina S Mutka, Dennis E Kyle, Lena Gerwick, Chang-Yun Wang, William H Gerwick | The Journal Of Organic Chemistry | 2015-08-05 |
| Competitive strategies differentiate closely related species of marine actinobacteria. | Nastassia V Patin, Katherine R Duncan, Pieter C Dorrestein, Paul R Jensen | The ISME Journal | 2015-08-04 |
| Vitroprocines, new antibiotics against Acinetobacter baumannii, discovered from marine Vibrio sp. QWI-06 using mass-spectrometry-based metabolomics approach. | Chih-Chuang Liaw, Pei-Chin Chen, Chao-Jen Shih, Sung-Pin Tseng, Ying-Mi Lai, Chi-Hsin Hsu, Pieter C Dorrestein, Yu-Liang Yang | Scientific Reports | 2015-08-04 |
| Erratum to: Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity. | Yan He, J Gregory Caporaso, Xiao-Tao Jiang, Hua-Fang Sheng, Susan M Huse, Jai Ram Rideout, Robert C Edgar, Evguenia Kopylova, William A Walters, Rob Knight, Hong-Wei Zhou | Microbiome | 2015-07-31 |
| Expanding the Described Metabolome of the Marine Cyanobacterium Moorea producens JHB through Orthogonal Natural Products Workflows. | Paul D Boudreau, Emily A Monroe, Suneet Mehrotra, Shane Desfor, Anton Korobeynikov, David H Sherman, Thomas F Murray, Lena Gerwick, Pieter C Dorrestein, William H Gerwick | PloS One | 2015-07-29 |
| Transcriptome analysis of bacteriophage communities in periodontal health and disease. | Tasha M Santiago-Rodriguez, Mayuri Naidu, Shira R Abeles, Tobias K Boehm, Melissa Ly, David T Pride | BMC Genomics | 2015-07-28 |
| Short Course in the Microbiome. | Kimberly Falana, Rob Knight, Camilia R Martin, Romina Goldszmid, K Leigh Greathouse, Joanne Gere, Howard Young, Winston Patrick Kuo | Journal Of Circulating Biomarkers | 2015-07-27 |
| The female urinary microbiome in urgency urinary incontinence. | Meghan M Pearce, Michael J Zilliox, Amy B Rosenfeld, Krystal J Thomas-White, Holly E Richter, Charles W Nager, Anthony G Visco, Ingrid E Nygaard, Matthew D Barber, Joseph Schaffer, Pamela Moalli, Vivian W Sung, Ariana L Smith, Rebecca Rogers, Tracy L Nolen, Dennis Wallace, Susan F Meikle, Xiaowu Gai, Alan J Wolfe, Linda Brubaker, | American Journal Of Obstetrics And Gynecology | 2015-07-23 |
| Metabolic co-dependence gives rise to collective oscillations within biofilms. | Jintao Liu, Arthur Prindle, Jacqueline Humphries, Marçal Gabalda-Sagarra, Munehiro Asally, Dong-yeon D Lee, San Ly, Jordi Garcia-Ojalvo, Gürol M Süel | Nature | 2015-07-22 |
| A Synthetic Quorum Sensing System Reveals a Potential Private Benefit for Public Good Production in a Biofilm. | Fang Zhang, Anna Kwan, Amy Xu, Gürol M Süel | PloS One | 2015-07-21 |
| Changes in secondary metabolic profiles of Microcystis aeruginosa strains in response to intraspecific interactions. | Enora Briand, Myriam Bormans, Muriel Gugger, Pieter C Dorrestein, William H Gerwick | Environmental Microbiology | 2015-07-21 |
| Differential Effects of Penicillin Binding Protein Deletion on the Susceptibility of Enterococcus faecium to Cationic Peptide Antibiotics. | George Sakoulas, Monika Kumaraswamy, Poochit Nonejuie, Brian J Werth, Micahel J Rybak, Joseph Pogliano, Louis B Rice, Victor Nizet | Antimicrobial Agents And Chemotherapy | 2015-07-20 |
| HIV Transmission Networks in the San Diego-Tijuana Border Region. | Sanjay R Mehta, Joel O Wertheim, Kimberly C Brouwer, Karla D Wagner, Antoine Chaillon, Steffanie Strathdee, Thomas L Patterson, Maria G Rangel, Mlenka Vargas, Ben Murrell, Richard Garfein, Susan J Little, Davey M Smith | EBioMedicine | 2015-07-18 |
| Utilizing Chemical Genomics to Identify Cytochrome b as a Novel Drug Target for Chagas Disease. | Shilpi Khare, Steven L Roach, S Whitney Barnes, Dominic Hoepfner, John R Walker, Arnab K Chatterjee, R Jeffrey Neitz, Michelle R Arkin, Case W McNamara, Jaime Ballard, Yin Lai, Yue Fu, Valentina Molteni, Vince Yeh, James H McKerrow, Richard J Glynne, Frantisek Supek | PLoS Pathogens | 2015-07-17 |
| Mechanisms of decompensation and organ failure in cirrhosis: From peripheral arterial vasodilation to systemic inflammation hypothesis. | Mauro Bernardi, Richard Moreau, Paolo Angeli, Bernd Schnabl, Vicente Arroyo | Journal Of Hepatology | 2015-07-17 |
| Bacillithiol: a key protective thiol in Staphylococcus aureus. | Varahenage R Perera, Gerald L Newton, Kit Pogliano | Expert Review Of Anti-infective Therapy | 2015-07-16 |
| Human Milk Oligosaccharides Inhibit Candida albicans Invasion of Human Premature Intestinal Epithelial Cells. | Sara Gonia, Michele Tuepker, Timothy Heisel, Chloe Autran, Lars Bode, Cheryl A Gale | The Journal Of Nutrition | 2015-07-15 |
| Impact of long-term tenofovir disoproxil fumarate on incidence of hepatocellular carcinoma in patients with chronic hepatitis B. | W Ray Kim, Rohit Loomba, Thomas Berg, Raul E Aguilar Schall, Leland J Yee, Phillip V Dinh, John F Flaherty, Eduardo B Martins, Terry M Therneau, Ira Jacobson, Scott Fung, Selim Gurel, Maria Buti, Patrick Marcellin | Cancer | 2015-07-15 |
| Stopping superbugs, maintaining the microbiota. | Victor Nizet | Science Translational Medicine | 2015-07-10 |
| High-throughput microfluidics to control and measure signaling dynamics in single yeast cells. | Anders S Hansen, Nan Hao, Erin K O'Shea | Nature Protocols | 2015-07-09 |
| The UniFrac significance test is sensitive to tree topology. | Catherine A Lozupone, Rob Knight | BMC Bioinformatics | 2015-07-07 |
| Genome mining and metabolic profiling of the rhizosphere bacterium Pseudomonas sp. SH-C52 for antimicrobial compounds. | Menno Van Der Voort, Harold J G Meijer, Yvonne Schmidt, Jeramie Watrous, Ester Dekkers, Rodrigo Mendes, Pieter C Dorrestein, Harald Gross, Jos M Raaijmakers | Frontiers In Microbiology | 2015-07-07 |
| Seminal Shedding of CMV and HIV Transmission among Men Who Have Sex with Men. | Sara Gianella, Konrad Scheffler, Sanjay R Mehta, Susan J Little, Lorri Freitas, Sheldon R Morris, Davey M Smith | International Journal Of Environmental Research And Public Health | 2015-07-07 |
| A Single miRNA-mRNA Interaction Affects the Immune Response in a Context- and Cell-Type-Specific Manner. | Li-Fan Lu, Georg Gasteiger, I-Shing Yu, Ashutosh Chaudhry, Jing-Ping Hsin, Yuheng Lu, Paula D Bos, Ling-Li Lin, Carolyn L Zawislak, Sunglim Cho, Joseph C Sun, Christina S Leslie, Shu-Wha Lin, Alexander Y Rudensky | Immunity | 2015-07-07 |
| Variation in the Microbiota of Ixodes Ticks with Regard to Geography, Species, and Sex. | Will Van Treuren, Loganathan Ponnusamy, R Jory Brinkerhoff, Antonio Gonzalez, Christian M Parobek, Jonathan J Juliano, Theodore G Andreadis, Richard C Falco, Lorenza Beati Ziegler, Nicholas Hathaway, Corinna Keeler, Michael Emch, Jeffrey A Bailey, R Michael Roe, Charles S Apperson, Rob Knight, Steven R Meshnick | Applied And Environmental Microbiology | 2015-07-06 |
| Heparan Sulfate Modulates Neutrophil and Endothelial Function in Antibacterial Innate Immunity. | Ding Xu, Joshua Olson, Jason N Cole, Xander M van Wijk, Volker Brinkmann, Arturo Zychlinsky, Victor Nizet, Jeffrey D Esko, Yung-Chi Chang | Infection And Immunity | 2015-07-06 |
| Pooled Nucleic Acid Testing to Detect Antiretroviral Treatment Failure in HIV-Infected Patients in Mozambique. | Myres Tilghman, Daniel Tsai, Titos P Buene, Manuel Tomas, Salma Amade, Daniel Gehlbach, Stephanie Chang, Caroline Ignacio, Gemma Caballero, Stephen Espitia, Susanne May, Emilia V Noormahomed, Davey M Smith | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2015-07-03 |
| IsaB Inhibits Autophagic Flux to Promote Host Transmission of Methicillin-Resistant Staphylococcus aureus. | Pei-Feng Liu, Jin-Shiung Cheng, Cheng-Len Sy, Wei-Chun Huang, Hsiu-Chen Yang, Richard L Gallo, Chun-Ming Huang, Chih-Wen Shu | The Journal Of Investigative Dermatology | 2015-07-02 |
| Targeting HIV Prevention Based on Molecular Epidemiology Among Deeply Sampled Subnetworks of Men Who Have Sex With Men. | Xicheng Wang, Yasong Wu, Lin Mao, Wei Xia, Weiwei Zhang, Lili Dai, Sanjay R Mehta, Joel O Wertheim, Xingqi Dong, Tong Zhang, Hao Wu, Davey M Smith | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2015-06-30 |
| Mitochondrial DNA Haplogroups and Neurocognitive Impairment During HIV Infection. | Todd Hulgan, David C Samuels, William Bush, Ronald J Ellis, Scott L Letendre, Robert K Heaton, Donald R Franklin, Peter Straub, Deborah G Murdock, David B Clifford, Ann C Collier, Benjamin B Gelman, Christina M Marra, Justin C McArthur, J Allen McCutchan, Susan Morgello, David M Simpson, Igor Grant, Asha R Kallianpur, | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2015-06-30 |
| Diversity-generating Retroelements in Phage and Bacterial Genomes. | Huatao Guo, Diego Arambula, Partho Ghosh, Jeff F Miller | Microbiology Spectrum | 2015-06-25 |
| Circadian rhythms. A protein fold switch joins the circadian oscillator to clock output in cyanobacteria. | Yong-Gang Chang, Susan E Cohen, Connie Phong, William K Myers, Yong-Ick Kim, Roger Tseng, Jenny Lin, Li Zhang, Joseph S Boyd, Yvonne Lee, Shannon Kang, David Lee, Sheng Li, R David Britt, Michael J Rust, Susan S Golden, Andy LiWang | Science (New York, N.Y.) | 2015-06-25 |
| The gut microbiota and liver disease. | Cristina Llorente, Bernd Schnabl | Cellular And Molecular Gastroenterology And Hepatology | 2015-06-20 |
| Dynamic aberrant NF-κB spurs tumorigenesis: a new model encompassing the microenvironment. | Spiros A Vlahopoulos, Osman Cen, Nina Hengen, James Agan, Maria Moschovi, Elena Critselis, Maria Adamaki, Flora Bacopoulou, John A Copland, Istvan Boldogh, Michael Karin, George P Chrousos | Cytokine & Growth Factor Reviews | 2015-06-20 |
| Biochemical Establishment and Characterization of EncM's Flavin-N5-oxide Cofactor. | Robin Teufel, Frederick Stull, Michael J Meehan, Quentin Michaudel, Pieter C Dorrestein, Bruce Palfey, Bradley S Moore | Journal Of The American Chemical Society | 2015-06-19 |
| Actinobenzoquinoline and Actinophenanthrolines A-C, Unprecedented Alkaloids from a Marine Actinobacterium. | Sang-Jip Nam, Christopher A Kauffman, Paul R Jensen, Curtis E Moore, Arnold L Rheingold, William Fenical | Organic Letters | 2015-06-18 |
| Is intestinal inflammation linking dysbiosis to gut barrier dysfunction during liver disease? | Katharina Brandl, Bernd Schnabl | Expert Review Of Gastroenterology & Hepatology | 2015-06-18 |
| Reinvigorating natural product combinatorial biosynthesis with synthetic biology. | Eunji Kim, Bradley S Moore, Yeo Joon Yoon | Nature Chemical Biology | 2015-06-15 |
| Beyond Agar: Gel Substrates with Improved Optical Clarity and Drug Efficiency and Reduced Autofluorescence for Microbial Growth Experiments. | Philipp A Jaeger, Cameron McElfresh, Lily R Wong, Trey Ideker | Applied And Environmental Microbiology | 2015-06-12 |
| Azithromycin Synergizes with Cationic Antimicrobial Peptides to Exert Bactericidal and Therapeutic Activity Against Highly Multidrug-Resistant Gram-Negative Bacterial Pathogens. | Leo Lin, Poochit Nonejuie, Jason Munguia, Andrew Hollands, Joshua Olson, Quang Dam, Monika Kumaraswamy, Heriberto Rivera, Ross Corriden, Manfred Rohde, Mary E Hensler, Michael D Burkart, Joe Pogliano, George Sakoulas, Victor Nizet | EBioMedicine | 2015-06-10 |
| Genital Cytomegalovirus Replication Predicts Syphilis Acquisition among HIV-1 Infected Men Who Have Sex with Men. | Sara Gianella, Davey M Smith, Eric S Daar, Michael P Dube, Andrea Lisco, Christophe Vanpouille, Leonid Margolis, Richard H Haubrich, Sheldon R Morris | PloS One | 2015-06-10 |
| On the apparent rarity of epithelial cancers in captive chimpanzees. | Nissi M Varki, Ajit Varki | Philosophical Transactions Of The Royal Society Of London. Series B, Biological Sciences | 2015-06-10 |
| Microbial and biochemical basis of a Fusarium wilt-suppressive soil. | Jae-Yul Cha, Sangjo Han, Hee-Jeon Hong, Hyunji Cho, Daran Kim, Youngho Kwon, Soon-Kyeong Kwon, Max Crüsemann, Yong Bok Lee, Jihyun F Kim, Guri Giaever, Corey Nislow, Bradley S Moore, Linda S Thomashow, David M Weller, Youn-Sig Kwak | The ISME Journal | 2015-06-09 |
| Chemogenetic profiling identifies RAD17 as synthetically lethal with checkpoint kinase inhibition. | John Paul Shen, Rohith Srivas, Andrew Gross, Jianfeng Li, Eric J Jaehnig, Su Ming Sun, Ana Bojorquez-Gomez, Katherine Licon, Vignesh Sivaganesh, Jia L Xu, Kristin Klepper, Huwate Yeerna, Daniel Pekin, Chu Ping Qiu, Haico van Attikum, Robert W Sobol, Trey Ideker | Oncotarget | 2015-06-08 |
| Adaptive Evolution of Thermotoga maritima Reveals Plasticity of the ABC Transporter Network. | Haythem Latif, Merve Sahin, Janna Tarasova, Yekaterina Tarasova, Vasiliy A Portnoy, Juan Nogales, Karsten Zengler | Applied And Environmental Microbiology | 2015-06-05 |
| Group A Streptococcal M1 Protein Sequesters Cathelicidin to Evade Innate Immune Killing. | Christopher N LaRock, Simon Döhrmann, Jordan Todd, Ross Corriden, Joshua Olson, Timo Johannssen, Bernd Lepenies, Richard L Gallo, Partho Ghosh, Victor Nizet | Cell Host & Microbe | 2015-06-03 |
| A streamlined ribosome profiling protocol for the characterization of microorganisms. | Haythem Latif, Richard Szubin, Justin Tan, Elizabeth Brunk, Anna Lechner, Karsten Zengler, Bernhard O Palsson | BioTechniques | 2015-06-01 |
| Carcass mass has little influence on the structure of gravesoil microbial communities. | Sophie Weiss, David O Carter, Jessica L Metcalf, Rob Knight | International Journal Of Legal Medicine | 2015-05-30 |
| Analysis of composition of microbiomes: a novel method for studying microbial composition. | Siddhartha Mandal, Will Van Treuren, Richard A White, Merete Eggesbø, Rob Knight, Shyamal D Peddada | Microbial Ecology In Health And Disease | 2015-05-29 |
| Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism. | Anna Edlund, Youngik Yang, Shibu Yooseph, Adam P Hall, Don D Nguyen, Pieter C Dorrestein, Karen E Nelson, Xuesong He, Renate Lux, Wenyuan Shi, Jeffrey S McLean | The ISME Journal | 2015-05-29 |
| Programmable probiotics for detection of cancer in urine. | Tal Danino, Arthur Prindle, Gabriel A Kwong, Matthew Skalak, Howard Li, Kaitlin Allen, Jeff Hasty, Sangeeta N Bhatia | Science Translational Medicine | 2015-05-29 |
| Exercise is More Effective at Altering Gut Microbial Composition and Producing Stable Changes in Lean Mass in Juvenile versus Adult Male F344 Rats. | Agnieszka Mika, Will Van Treuren, Antonio González, Jonathan J Herrera, Rob Knight, Monika Fleshner | PloS One | 2015-05-27 |
| Reduced maternal levels of common viruses during pregnancy predict offspring psychosis: potential role of enhanced maternal immune activity? | Marta Canuti, Stephen Buka, Seyed Mohammad Jazaeri Farsani, Bas B Oude Munnink, Maarten F Jebbink, Nico J M van Beveren, Lieuwe de Haan, Jill Goldstein, Larry J Seidman, Ming T Tsuang, Jitschak G Storosum, Lia van der Hoek | Schizophrenia Research | 2015-05-23 |
| Mass spectrometry tools and workflows for revealing microbial chemistry. | Tal Luzzatto-Knaan, Alexey V Melnik, Pieter C Dorrestein | The Analyst | 2015-05-22 |
| L-Rhamnosylation of Listeria monocytogenes Wall Teichoic Acids Promotes Resistance to Antimicrobial Peptides by Delaying Interaction with the Membrane. | Filipe Carvalho, Magda L Atilano, Rita Pombinho, Gonçalo Covas, Richard L Gallo, Sérgio R Filipe, Sandra Sousa, Didier Cabanes | PLoS Pathogens | 2015-05-22 |
| Global transcription of CRISPR loci in the human oral cavity. | Andrew G Lum, Melissa Ly, Tasha M Santiago-Rodriguez, Mayuri Naidu, Tobias K Boehm, David T Pride | BMC Genomics | 2015-05-21 |
| Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity. | Yan He, J Gregory Caporaso, Xiao-Tao Jiang, Hua-Fang Sheng, Susan M Huse, Jai Ram Rideout, Robert C Edgar, Evguenia Kopylova, William A Walters, Rob Knight, Hong-Wei Zhou | Microbiome | 2015-05-20 |
| Group B Streptococcus Evades Host Immunity by Degrading Hyaluronan. | Stacey L Kolar, Pierre Kyme, Ching Wen Tseng, Antoine Soliman, Amber Kaplan, Jiurong Liang, Victor Nizet, Dianhua Jiang, Ramachandran Murali, Moshe Arditi, David M Underhill, George Y Liu | Cell Host & Microbe | 2015-05-19 |
| Salinipyrone and Pacificanone Are Biosynthetic By-products of the Rosamicin Polyketide Synthase. | Takayoshi Awakawa, Max Crüsemann, Jason Munguia, Nadine Ziemert, Victor Nizet, William Fenical, Bradley S Moore | Chembiochem : A European Journal Of Chemical Biology | 2015-05-15 |
| Microbiota and Host Nutrition across Plant and Animal Kingdoms. | Stéphane Hacquard, Ruben Garrido-Oter, Antonio González, Stijn Spaepen, Gail Ackermann, Sarah Lebeis, Alice C McHardy, Jeffrey L Dangl, Rob Knight, Ruth Ley, Paul Schulze-Lefert | Cell Host & Microbe | 2015-05-15 |
| Systems Analysis of Immunity to Influenza Vaccination across Multiple Years and in Diverse Populations Reveals Shared Molecular Signatures. | Helder I Nakaya, Thomas Hagan, Sai S Duraisingham, Eva K Lee, Marcin Kwissa, Nadine Rouphael, Daniela Frasca, Merril Gersten, Aneesh K Mehta, Renaud Gaujoux, Gui-Mei Li, Shakti Gupta, Rafi Ahmed, Mark J Mulligan, Shai Shen-Orr, Bonnie B Blomberg, Shankar Subramaniam, Bali Pulendran | Immunity | 2015-05-11 |
| In vitro activity of daptomycin in combination with β-lactams, gentamicin, rifampin, and tigecycline against daptomycin-nonsusceptible enterococci. | Janet A Hindler, Annie Wong-Beringer, Carmen L Charlton, Shelley A Miller, Theodoros Kelesidis, Marissa Carvalho, George Sakoulas, Poochit Nonejuie, Joseph Pogliano, Victor Nizet, Romney Humphries | Antimicrobial Agents And Chemotherapy | 2015-05-11 |
| Visualization and functional dissection of coaxial paired SpoIIIE channels across the sporulation septum. | Jae Yen Shin, Javier Lopez-Garrido, Sang-Hyuk Lee, Cesar Diaz-Celis, Tinya Fleming, Carlos Bustamante, Kit Pogliano | ELife | 2015-05-07 |
| Unraveling interactions in microbial communities - from co-cultures to microbiomes. | Justin Tan, Cristal Zuniga, Karsten Zengler | Journal Of Microbiology (Seoul, Korea) | 2015-05-03 |
| Role of Hypoxia Inducible Factor-1α (HIF-1α) in Innate Defense against Uropathogenic Escherichia coli Infection. | Ann E Lin, Federico C Beasley, Joshua Olson, Nadia Keller, Robert A Shalwitz, Thomas J Hannan, Scott J Hultgren, Victor Nizet | PLoS Pathogens | 2015-04-30 |
| 2-O-Sulfated Domains in Syndecan-1 Heparan Sulfate Inhibit Neutrophil Cathelicidin and Promote Staphylococcus aureus Corneal Infection. | Atsuko Hayashida, Shiro Amano, Richard L Gallo, Robert J Linhardt, Jian Liu, Pyong Woo Park | The Journal Of Biological Chemistry | 2015-04-30 |
| Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem. | Karen Andrade, Jörn Logemann, Karla B Heidelberg, Joanne B Emerson, Luis R Comolli, Laura A Hug, Alexander J Probst, Angus Keillar, Brian C Thomas, Christopher S Miller, Eric E Allen, John W Moreau, Jochen J Brocks, Jillian F Banfield | The ISME Journal | 2015-04-28 |
| Differences in Evolution of HIV-1 Subtype C Reverse Transcriptase Between Children and Adults Likely Explained by Maturity of Cytotoxic T-Lymphocyte Responses. | Shanmugam Saravanan, Selvamurthi Gomathi, Bagavathi Kausalya, Jayaseelan Boobalan, Kailapuri G Murugavel, Pachamuthu Balakrishnan, Sarvode N Mothi, Sunil S Solomon, Nagalingeswaran Kumarasamy, Poongulali Selvamuthu, Suniti Solomon, Davey M Smith | AIDS Research And Human Retroviruses | 2015-04-28 |
| Short Communication: Increase of HIV-1 K103N Transmitted Drug Resistance and Its Association with Efavirenz Use in South Korea. | Bum Sik Chin, Hyoung-Shik Shin, Gayeon Kim, Gabriel A Wagner, Sara Gianella, Davey M Smith | AIDS Research And Human Retroviruses | 2015-04-28 |
| Development and validation of the San Diego Early Test Score to predict acute and early HIV infection risk in men who have sex with men. | Martin Hoenigl, Nadir Weibel, Sanjay R Mehta, Christy M Anderson, Jeffrey Jenks, Nella Green, Sara Gianella, Davey M Smith, Susan J Little | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2015-04-22 |
| Equine and Canine Influenza H3N8 Viruses Show Minimal Biological Differences Despite Phylogenetic Divergence. | Kurtis H Feng, Gaelle Gonzalez, Lingquan Deng, Hai Yu, Victor L Tse, Lu Huang, Kai Huang, Brian R Wasik, Bin Zhou, David E Wentworth, Edward C Holmes, Xi Chen, Ajit Varki, Pablo R Murcia, Colin R Parrish | Journal Of Virology | 2015-04-22 |
| The effects of time-restricted feeding on lipid metabolism and adiposity. | Amandine Chaix, Amir Zarrinpar | Adipocyte | 2015-04-20 |
| Characterization of microsporidia-induced developmental arrest and a transmembrane leucine-rich repeat protein in Caenorhabditis elegans. | Robert J Luallen, Malina A Bakowski, Emily R Troemel | PloS One | 2015-04-13 |
| Prediction of Early Childhood Caries via Spatial-Temporal Variations of Oral Microbiota. | Fei Teng, Fang Yang, Shi Huang, Cunpei Bo, Zhenjiang Zech Xu, Amnon Amir, Rob Knight, Junqi Ling, Jian Xu | Cell Host & Microbe | 2015-04-10 |
| Molecular networking and pattern-based genome mining improves discovery of biosynthetic gene clusters and their products from Salinispora species. | Katherine R Duncan, Max Crüsemann, Anna Lechner, Anindita Sarkar, Jie Li, Nadine Ziemert, Mingxun Wang, Nuno Bandeira, Bradley S Moore, Pieter C Dorrestein, Paul R Jensen | Chemistry & Biology | 2015-04-09 |
| Bacteriophage and their potential roles in the human oral cavity. | Anna Edlund, Tasha M Santiago-Rodriguez, Tobias K Boehm, David T Pride | Journal Of Oral Microbiology | 2015-04-09 |
| Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis. | Soo-Yon Rhee, Jose Luis Blanco, Michael R Jordan, Jonathan Taylor, Philippe Lemey, Vici Varghese, Raph L Hamers, Silvia Bertagnolio, Tobias F Rinke de Wit, Avelin F Aghokeng, Jan Albert, Radko Avi, Santiago Avila-Rios, Pascal O Bessong, James I Brooks, Charles A B Boucher, Zabrina L Brumme, Michael P Busch, Hermann Bussmann, Marie-Laure Chaix, Bum Sik Chin, Toni T D'Aquin, Cillian F De Gascun, Anne Derache, Diane Descamps, Alaka K Deshpande, Cyrille F Djoko, Susan H Eshleman, Herve Fleury, Pierre Frange, Seiichiro Fujisaki, P Richard Harrigan, Junko Hattori, Africa Holguin, Gillian M Hunt, Hiroshi Ichimura, Pontiano Kaleebu, David Katzenstein, Sasisopin Kiertiburanakul, Jerome H Kim, Sung Soon Kim, Yanpeng Li, Irja Lutsar, Lynn Morris, Nicaise Ndembi, Kee Peng Ng, Ramesh S Paranjape, Martine Peeters, Mario Poljak, Matt A Price, Manon L Ragonnet-Cronin, Gustavo Reyes-Terán, Morgane Rolland, Sunee Sirivichayakul, Davey M Smith, Marcelo A Soares, Vincent V Soriano, Deogratius Ssemwanga, Maja Stanojevic, Mariane A Stefani, Wataru Sugiura, Somnuek Sungkanuparph, Amilcar Tanuri, Kok Keng Tee, Hong-Ha M Truong, David A M C van de Vijver, Nicole Vidal, Chunfu Yang, Rongge Yang, Gonzalo Yebra, John P A Ioannidis, Anne-Mieke Vandamme, Robert W Shafer | PLoS Medicine | 2015-04-07 |
| Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures. | Neha Garg, Clifford Kapono, Yan Wei Lim, Nobuhiro Koyama, Mark J A Vermeij, Douglas Conrad, Forest Rohwer, Pieter C Dorrestein | International Journal Of Mass Spectrometry | 2015-04-07 |
| Microsporidia-host interactions. | Suzannah C Szumowski, Emily R Troemel | Current Opinion In Microbiology | 2015-04-04 |
| Analysis of the effects of cigarette smoke on staphylococcal virulence phenotypes. | Elisa K McEachern, John H Hwang, Katherine M Sladewski, Shari Nicatia, Carola Dewitz, Denzil P Mathew, Victor Nizet, Laura E Crotty Alexander | Infection And Immunity | 2015-03-30 |
| Molecular cartography of the human skin surface in 3D. | Amina Bouslimani, Carla Porto, Christopher M Rath, Mingxun Wang, Yurong Guo, Antonio Gonzalez, Donna Berg-Lyon, Gail Ackermann, Gitte Julie Moeller Christensen, Teruaki Nakatsuji, Lingjuan Zhang, Andrew W Borkowski, Michael J Meehan, Kathleen Dorrestein, Richard L Gallo, Nuno Bandeira, Rob Knight, Theodore Alexandrov, Pieter C Dorrestein | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2015-03-30 |
| The circadian oscillator in Synechococcus elongatus controls metabolite partitioning during diurnal growth. | Spencer Diamond, Darae Jun, Benjamin E Rubin, Susan S Golden | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2015-03-30 |
| Multidimensional clinical phenotyping of an adult cystic fibrosis patient population. | Douglas J Conrad, Barbara A Bailey | PloS One | 2015-03-30 |
| Effect of preservation method on spider monkey (Ateles geoffroyi) fecal microbiota over 8 weeks. | Vanessa L Hale, Chia L Tan, Rob Knight, Katherine R Amato | Journal Of Microbiological Methods | 2015-03-27 |
| Fatty acid-releasing activities in Sinorhizobium meliloti include unusual diacylglycerol lipase. | Diana X Sahonero-Canavesi, Christian Sohlenkamp, Mario Sandoval-Calderón, Anne Lamsa, Kit Pogliano, Isabel M López-Lara, Otto Geiger | Environmental Microbiology | 2015-03-27 |
| Subsistence strategies in traditional societies distinguish gut microbiomes. | Alexandra J Obregon-Tito, Raul Y Tito, Jessica Metcalf, Krithivasan Sankaranarayanan, Jose C Clemente, Luke K Ursell, Zhenjiang Zech Xu, Will Van Treuren, Rob Knight, Patrick M Gaffney, Paul Spicer, Paul Lawson, Luis Marin-Reyes, Omar Trujillo-Villarroel, Morris Foster, Emilio Guija-Poma, Luzmila Troncoso-Corzo, Christina Warinner, Andrew T Ozga, Cecil M Lewis | Nature Communications | 2015-03-25 |
| Mass Spectrometry Analysis of Pseudomonas aeruginosa Treated with Azithromycin. | Vanessa V Phelan, Jinshu Fang, Pieter C Dorrestein | Journal Of The American Society For Mass Spectrometry | 2015-03-24 |
| Directed natural product biosynthesis gene cluster capture and expression in the model bacterium Bacillus subtilis. | Yongxin Li, Zhongrui Li, Kazuya Yamanaka, Ying Xu, Weipeng Zhang, Hera Vlamakis, Roberto Kolter, Bradley S Moore, Pei-Yuan Qian | Scientific Reports | 2015-03-24 |
| Identification of staphylococcal phage with reduced transcription in human blood through transcriptome sequencing. | Tasha M Santiago-Rodriguez, Mayuri Naidu, Marcus B Jones, Melissa Ly, David T Pride | Frontiers In Microbiology | 2015-03-24 |
| Auranofin exerts broad-spectrum bactericidal activities by targeting thiol-redox homeostasis. | Michael B Harbut, Catherine Vilchèze, Xiaozhou Luo, Mary E Hensler, Hui Guo, Baiyuan Yang, Arnab K Chatterjee, Victor Nizet, William R Jacobs, Peter G Schultz, Feng Wang | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2015-03-23 |
| Targeted diversity generation by intraterrestrial archaea and archaeal viruses. | Blair G Paul, Sarah C Bagby, Elizabeth Czornyj, Diego Arambula, Sumit Handa, Alexander Sczyrba, Partho Ghosh, Jeff F Miller, David L Valentine | Nature Communications | 2015-03-23 |
| Mechanism of antibacterial activity of liposomal linolenic acid against Helicobacter pylori. | Sung Woo Jung, Soracha Thamphiwatana, Liangfang Zhang, Marygorret Obonyo | PloS One | 2015-03-20 |
| Proteomic analysis of urine exosomes reveals renal tubule response to leptospiral colonization in experimentally infected rats. | Satish P RamachandraRao, Michael A Matthias, Chanthel Kokoy-Mondragon, Chanthel-Kokoy Mondrogon, Eamon Aghania, Cathleen Park, Casey Kong, Michelle Ishaya, Assael Madrigal, Jennifer Horng, Roni Khoshaba, Anousone Bounkhoun, Fabrizio Basilico, Antonella De Palma, Anna Maria Agresta, Linda Awdishu, Robert K Naviaux, Joseph M Vinetz, Pierluigi Mauri | PLoS Neglected Tropical Diseases | 2015-03-20 |
| Direct detection of fungal siderophores on bats with white-nose syndrome via fluorescence microscopy-guided ambient ionization mass spectrometry. | Samantha J Mascuch, Wilna J Moree, Cheng-Chih Hsu, Gregory G Turner, Tina L Cheng, David S Blehert, A Marm Kilpatrick, Winifred F Frick, Michael J Meehan, Pieter C Dorrestein, Lena Gerwick | PloS One | 2015-03-17 |
| Anti-Inflammatory Effects and Joint Protection in Collagen-Induced Arthritis after Treatment with IQ-1S, a Selective c-Jun N-Terminal Kinase Inhibitor. | Igor A Schepetkin, Liliya N Kirpotina, Deepa Hammaker, Irina Kochetkova, Andrei I Khlebnikov, Sergey A Lyakhov, Gary S Firestein, Mark T Quinn | The Journal Of Pharmacology And Experimental Therapeutics | 2015-03-17 |
| Current developments in marine microbiology: high-pressure biotechnology and the genetic engineering of piezophiles. | Yu Zhang, Xuegong Li, Douglas H Bartlett, Xiang Xiao | Current Opinion In Biotechnology | 2015-03-13 |
| A group A Streptococcus ADP-ribosyltransferase toxin stimulates a protective interleukin 1β-dependent macrophage immune response. | Ann E Lin, Federico C Beasley, Nadia Keller, Andrew Hollands, Rodolfo Urbano, Emily R Troemel, Hal M Hoffman, Victor Nizet | MBio | 2015-03-10 |
| The Sordid Affair Between Human Herpesvirus and HIV. | Sara Gianella, Marta Massanella, Joel O Wertheim, Davey M Smith | The Journal Of Infectious Diseases | 2015-03-06 |
| Mechanism of action of thalassospiramides, a new class of calpain inhibitors. | Liang Lu, Michael J Meehan, Shuo Gu, Zhilong Chen, Weipeng Zhang, Gen Zhang, Lingli Liu, Xuhui Huang, Pieter C Dorrestein, Ying Xu, Bradley S Moore, Pei-Yuan Qian | Scientific Reports | 2015-03-05 |
| The marine actinomycete genus Salinispora: a model organism for secondary metabolite discovery. | Paul R Jensen, Bradley S Moore, William Fenical | Natural Product Reports | 2015-03-03 |
| The architecture of ArgR-DNA complexes at the genome-scale in Escherichia coli. | Suhyung Cho, Yoo-Bok Cho, Taek Jin Kang, Sun Chang Kim, Bernhard Palsson, Byung-Kwan Cho | Nucleic Acids Research | 2015-03-03 |
| Heterogeneity of genetic pathways toward daptomycin nonsusceptibility in Staphylococcus aureus determined by adjunctive antibiotics. | Andrew D Berti, Sarah L Baines, Benjamin P Howden, George Sakoulas, Victor Nizet, Richard A Proctor, Warren E Rose | Antimicrobial Agents And Chemotherapy | 2015-03-02 |
| Why microbiome treatments could pay off soon. | Rob Knight | Nature | 2015-02-26 |
| Cerebrospinal fluid (CSF) CD8+ T-cells that express interferon-gamma contribute to HIV associated neurocognitive disorders (HAND). | Rachel D Schrier, Suzi Hong, Melanie Crescini, Ronald Ellis, Josué Pérez-Santiago, Celsa Spina, Scott Letendre, | PloS One | 2015-02-26 |
| Biocompatible enzymatic roller pens for direct writing of biocatalytic materials: "do-it-yourself" electrochemical biosensors. | Amay J Bandodkar, Wenzhao Jia, Julian Ramírez, Joseph Wang | Advanced Healthcare Materials | 2015-02-26 |
| A gp130-Src-YAP module links inflammation to epithelial regeneration. | Koji Taniguchi, Li-Wha Wu, Sergei I Grivennikov, Petrus R de Jong, Ian Lian, Fa-Xing Yu, Kepeng Wang, Samuel B Ho, Brigid S Boland, John T Chang, William J Sandborn, Gary Hardiman, Eyal Raz, Yoshihiko Maehara, Akihiko Yoshimura, Jessica Zucman-Rossi, Kun-Liang Guan, Michael Karin | Nature | 2015-02-25 |
| Thiopeptide antibiotics stimulate biofilm formation in Bacillus subtilis. | Rachel Bleich, Jeramie D Watrous, Pieter C Dorrestein, Albert A Bowers, Elizabeth A Shank | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2015-02-23 |
| Repurposing auranofin as a lead candidate for treatment of lymphatic filariasis and onchocerciasis. | Christina A Bulman, Chelsea M Bidlow, Sara Lustigman, Fidelis Cho-Ngwa, David Williams, Alberto A Rascón, Nancy Tricoche, Moses Samje, Aaron Bell, Brian Suzuki, K C Lim, Nonglak Supakorndej, Prasit Supakorndej, Alan R Wolfe, Giselle M Knudsen, Steven Chen, Chris Wilson, Kean-Hooi Ang, Michelle Arkin, Jiri Gut, Chris Franklin, Chris Marcellino, James H McKerrow, Anjan Debnath, Judy A Sakanari | PLoS Neglected Tropical Diseases | 2015-02-20 |
| Myeloid HIF-1 is protective in Helicobacter pylori-mediated gastritis. | Pavle Matak, Mylène Heinis, Jacques R R Mathieu, Ross Corriden, Sylvain Cuvellier, Stéphanie Delga, Rémi Mounier, Alexandre Rouquette, Josette Raymond, Dominique Lamarque, Jean-François Emile, Victor Nizet, Eliette Touati, Carole Peyssonnaux | Journal Of Immunology (Baltimore, Md. : 1950) | 2015-02-20 |
| Biophysical mechanisms that maintain biodiversity through trade-offs. | Justin R Meyer, Ivana Gudelj, Robert Beardmore | Nature Communications | 2015-02-19 |
| Cationic antimicrobial peptide resistance mechanisms of streptococcal pathogens. | Christopher N LaRock, Victor Nizet | Biochimica Et Biophysica Acta | 2015-02-17 |
| Photosynthetic bio-manufacturing: food, fuel, and medicine for the 21st century. | Stephen Mayfield, Susan S Golden | Photosynthesis Research | 2015-02-14 |
| Hedgehog: linking uracil to innate defense. | Ethan Bier, Victor Nizet | Cell Host & Microbe | 2015-02-13 |
| A wild C. elegans strain has enhanced epithelial immunity to a natural microsporidian parasite. | Keir M Balla, Erik C Andersen, Leonid Kruglyak, Emily R Troemel | PLoS Pathogens | 2015-02-13 |
| Digging for biosynthetic dark matter. | Jia Jia Zhang, Bradley S Moore | ELife | 2015-02-13 |
| S. epidermidis influence on host immunity: more than skin deep. | Richard L Gallo | Cell Host & Microbe | 2015-02-13 |
| Spongosine production by a Vibrio harveyi strain associated with the sponge Tectitethya crypta. | Matthew J Bertin, Sarah L Schwartz, John Lee, Anton Korobeynikov, Pieter C Dorrestein, Lena Gerwick, William H Gerwick | Journal Of Natural Products | 2015-02-10 |
| Mechanisms of group A Streptococcus resistance to reactive oxygen species. | Anna Henningham, Simon Döhrmann, Victor Nizet, Jason N Cole | FEMS Microbiology Reviews | 2015-02-10 |
| Cross-talk and regulatory interactions between the essential response regulator RpaB and cyanobacterial circadian clock output. | Javier Espinosa, Joseph S Boyd, Raquel Cantos, Paloma Salinas, Susan S Golden, Asuncion Contreras | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2015-02-04 |
| De novo sequences of Haloquadratum walsbyi from Lake Tyrrell, Australia, reveal a variable genomic landscape. | Benjamin J Tully, Joanne B Emerson, Karen Andrade, Jochen J Brocks, Eric E Allen, Jillian F Banfield, Karla B Heidelberg | Archaea (Vancouver, B.C.) | 2015-02-01 |
| The Gut Microbiota, Intestinal Permeability, Bacterial Translocation, and Nonalcoholic Fatty Liver Disease: What Comes First? | Erin Spengler, Rohit Loomba | Cellular And Molecular Gastroenterology And Hepatology | 2015-01-31 |
| EPiK-a Workflow for Electron Tomography in Kepler. | Ruijuan Chen, Xiaohua Wan, Ilkay Altintas, Jianwu Wang, Daniel Crawl, Sébastien Phan, Albert Lawrence, Mark Ellisman | Procedia Computer Science | 2015-01-27 |
| Micromotors to capture and destroy anthrax simulant spores. | Jahir Orozco, Guoqing Pan, Sirilak Sattayasamitsathit, Michael Galarnyk, Joseph Wang | The Analyst | 2015-01-27 |
| Regulation of asymmetric division and CD8+ T lymphocyte fate specification by protein kinase Cζ and protein kinase Cλ/ι. | Patrick J Metz, Janilyn Arsenio, Boyko Kakaradov, Stephanie H Kim, Kelly A Remedios, Katherine Oakley, Kazunori Akimoto, Shigeo Ohno, Gene W Yeo, John T Chang | Journal Of Immunology (Baltimore, Md. : 1950) | 2015-01-23 |
| The human urine virome in association with urinary tract infections. | Tasha M Santiago-Rodriguez, Melissa Ly, Natasha Bonilla, David T Pride | Frontiers In Microbiology | 2015-01-23 |
| Examining the use of ceftaroline in the treatment of Streptococcus pneumoniae meningitis with reference to human cathelicidin LL-37. | George Sakoulas, Poochit Nonejuie, Ravina Kullar, Joseph Pogliano, Michael J Rybak, Victor Nizet | Antimicrobial Agents And Chemotherapy | 2015-01-20 |
| Biomarkers of NAFLD progression: a lipidomics approach to an epidemic. | D Lee Gorden, David S Myers, Pavlina T Ivanova, Eoin Fahy, Mano R Maurya, Shakti Gupta, Jun Min, Nathanael J Spann, Jeffrey G McDonald, Samuel L Kelly, Jingjing Duan, M Cameron Sullards, Thomas J Leiker, Robert M Barkley, Oswald Quehenberger, Aaron M Armando, Stephen B Milne, Thomas P Mathews, Michelle D Armstrong, Chijun Li, Willie V Melvin, Ronald H Clements, M Kay Washington, Alisha M Mendonsa, Joseph L Witztum, Ziqiang Guan, Christopher K Glass, Robert C Murphy, Edward A Dennis, Alfred H Merrill, David W Russell, Shankar Subramaniam, H Alex Brown | Journal Of Lipid Research | 2015-01-17 |
| Methods to determine intestinal permeability and bacterial translocation during liver disease. | Lirui Wang, Cristina Llorente, Phillipp Hartmann, An-Ming Yang, Peng Chen, Bernd Schnabl | Journal Of Immunological Methods | 2015-01-13 |
| A phase 3, open-label, randomized trial to evaluate the safety and efficacy of levofloxacin inhalation solution (APT-1026) versus tobramycin inhalation solution in stable cystic fibrosis patients. | J Stuart Elborn, David E Geller, Douglas Conrad, Shawn D Aaron, Alan R Smyth, Rainald Fischer, Eitan Kerem, Scott C Bell, Jeffery S Loutit, Michael N Dudley, Elizabeth E Morgan, Donald R VanDevanter, Patrick A Flume | Journal Of Cystic Fibrosis : Official Journal Of The European Cystic Fibrosis Society | 2015-01-13 |
| Determination of receptor specificities for whole influenza viruses using multivalent glycan arrays. | Mia L Huang, Miriam Cohen, Christopher J Fisher, Robert T Schooley, Pascal Gagneux, Kamil Godula | Chemical Communications (Cambridge, England) | 2015-01-10 |
| Nitric Oxide Synthase as a Target for Methicillin-Resistant Staphylococcus aureus. | Jeffrey K Holden, Soosung Kang, Federico C Beasley, Maris A Cinelli, Huiying Li, Saurabh G Roy, Dillon Dejam, Aimee L Edinger, Victor Nizet, Richard B Silverman, Thomas L Poulos | Chemistry & Biology | 2015-01-07 |
| Alcoholic liver disease: the gut microbiome and liver cross talk. | Phillipp Hartmann, Caroline T Seebauer, Bernd Schnabl | Alcoholism, Clinical And Experimental Research | 2015-01-07 |
| Model-driven discovery of underground metabolic functions in Escherichia coli. | Gabriela I Guzmán, José Utrilla, Sergey Nurk, Elizabeth Brunk, Jonathan M Monk, Ali Ebrahim, Bernhard O Palsson, Adam M Feist | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2015-01-06 |
| Innate immunity. Dermal adipocytes protect against invasive Staphylococcus aureus skin infection. | Ling-juan Zhang, Christian F Guerrero-Juarez, Tissa Hata, Sagar P Bapat, Raul Ramos, Maksim V Plikus, Richard L Gallo | Science (New York, N.Y.) | 2015-01-03 |
| Phospholipase A2-responsive antibiotic delivery via nanoparticle-stabilized liposomes for the treatment of bacterial infection. | Soracha Thamphiwatana, Weiwei Gao, Dissaya Pornpattananangkul, Qiangzhe Zhang, Victoria Fu, Jiayang Li, Jieming Li, Marygorret Obonyo, Liangfang Zhang | Journal Of Materials Chemistry. B | 2014-12-30 |
| Detecting KaiC phosphorylation rhythms of the cyanobacterial circadian oscillator in vitro and in vivo. | Yong-Ick Kim, Joseph S Boyd, Javier Espinosa, Susan S Golden | Methods In Enzymology | 2014-12-27 |
| The organic anion transporter (OAT) family: a systems biology perspective. | Sanjay K Nigam, Kevin T Bush, Gleb Martovetsky, Sun-Young Ahn, Henry C Liu, Erin Richard, Vibha Bhatnagar, Wei Wu | Physiological Reviews | 2014-12-26 |
| Best practices for fluorescence microscopy of the cyanobacterial circadian clock. | Susan E Cohen, Marcella L Erb, Joe Pogliano, Susan S Golden | Methods In Enzymology | 2014-12-26 |
| High-throughput and quantitative approaches for measuring circadian rhythms in cyanobacteria using bioluminescence. | Ryan K Shultzaberger, Mark L Paddock, Takeo Katsuki, Ralph J Greenspan, Susan S Golden | Methods In Enzymology | 2014-12-26 |
| Phosphorylation of LC3 by the Hippo kinases STK3/STK4 is essential for autophagy. | Deepti S Wilkinson, Jinel S Jariwala, Ericka Anderson, Koyel Mitra, Jill Meisenhelder, Jessica T Chang, Trey Ideker, Tony Hunter, Victor Nizet, Andrew Dillin, Malene Hansen | Molecular Cell | 2014-12-24 |
| Salmonella-induced Diarrhea Occurs in the Absence of IL-8 Receptor (CXCR2)-Dependent Neutrophilic Inflammation. | Ronald R Marchelletta, Melanie G Gareau, Sharon Okamoto, Donald G Guiney, Kim E Barrett, Joshua Fierer | The Journal Of Infectious Diseases | 2014-12-23 |
| Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle. | Xuesong He, Jeffrey S McLean, Anna Edlund, Shibu Yooseph, Adam P Hall, Su-Yang Liu, Pieter C Dorrestein, Eduardo Esquenazi, Ryan C Hunter, Genhong Cheng, Karen E Nelson, Renate Lux, Wenyuan Shi | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2014-12-22 |
| Yeast PP4 interacts with ATR homolog Ddc2-Mec1 and regulates checkpoint signaling. | Nicole Hustedt, Andrew Seeber, Ragna Sack, Monika Tsai-Pflugfelder, Bhupinder Bhullar, Hanneke Vlaming, Fred van Leeuwen, Aude Guénolé, Haico van Attikum, Rohith Srivas, Trey Ideker, Kenji Shimada, Susan M Gasser | Molecular Cell | 2014-12-18 |
| Sioxanthin, a novel glycosylated carotenoid, reveals an unusual subclustered biosynthetic pathway. | Taylor K S Richter, Chambers C Hughes, Bradley S Moore | Environmental Microbiology | 2014-12-11 |
| Absence of neurocognitive effect of hepatitis C infection in HIV-coinfected people. | David B Clifford, Florin Vaida, Yu-Ting Kao, Donald R Franklin, Scott L Letendre, Ann C Collier, Christina M Marra, Benjamin B Gelman, Justin C McArthur, Susan Morgello, David M Simpson, Igor Grant, Robert K Heaton, | Neurology | 2014-12-10 |
| Oral streptococci utilize a Siglec-like domain of serine-rich repeat adhesins to preferentially target platelet sialoglycans in human blood. | Lingquan Deng, Barbara A Bensing, Supaporn Thamadilok, Hai Yu, Kam Lau, Xi Chen, Stefan Ruhl, Paul M Sullam, Ajit Varki | PLoS Pathogens | 2014-12-04 |
| Commensal microbiota is hepatoprotective and prevents liver fibrosis in mice. | Magdalena Mazagova, Lirui Wang, Andrew T Anfora, Max Wissmueller, Scott A Lesley, Yukiko Miyamoto, Lars Eckmann, Suraj Dhungana, Wimal Pathmasiri, Susan Sumner, Caroline Westwater, David A Brenner, Bernd Schnabl | FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology | 2014-12-02 |
| Microbial pathogenesis and host defense in the nematode C. elegans. | Lianne B Cohen, Emily R Troemel | Current Opinion In Microbiology | 2014-11-27 |
| Transient lingual papillitis associated with confirmed herpes simplex virus 1 in a patient with kawasaki disease. | Andrew C Krakowski, Silvia S Kim, Jane C Burns | Pediatric Dermatology | 2014-11-27 |
| Influence of the timing of antiretroviral therapy on the potential for normalization of immune status in human immunodeficiency virus 1-infected individuals. | Jason F Okulicz, Tuan D Le, Brian K Agan, Jose F Camargo, Michael L Landrum, Edwina Wright, Matthew J Dolan, Anuradha Ganesan, Tomas M Ferguson, Davey M Smith, Douglas D Richman, Susan J Little, Robert A Clark, Weijing He, Sunil K Ahuja | JAMA Internal Medicine | 2014-11-25 |
| The generating function approach for Peptide identification in spectral networks. | Adrian Guthals, Christina Boucher, Nuno Bandeira | Journal Of Computational Biology : A Journal Of Computational Molecular Cell Biology | 2014-11-25 |
| Interleukin-17 receptor a signaling in transformed enterocytes promotes early colorectal tumorigenesis. | Kepeng Wang, Min Kyoung Kim, Giuseppe Di Caro, Jerry Wong, Shabnam Shalapour, Jun Wan, Wei Zhang, Zhenyu Zhong, Elsa Sanchez-Lopez, Li-Wha Wu, Koji Taniguchi, Ying Feng, Eric Fearon, Sergei I Grivennikov, Michael Karin | Immunity | 2014-11-25 |
| In vivo treatment of Helicobacter pylori infection with liposomal linolenic acid reduces colonization and ameliorates inflammation. | Soracha Thamphiwatana, Weiwei Gao, Marygorret Obonyo, Liangfang Zhang | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2014-11-24 |
| Synthesis of mevalonate- and fluorinated mevalonate prodrugs and their in vitro human plasma stability. | Soosung Kang, Mizuki Watanabe, J C Jacobs, Masaya Yamaguchi, Samira Dahesh, Victor Nizet, Thomas S Leyh, Richard B Silverman | European Journal Of Medicinal Chemistry | 2014-11-22 |
| Next generation sequencing improves detection of drug resistance mutations in infants after PMTCT failure. | Randall G Fisher, Davey M Smith, Ben Murrell, Ruhan Slabbert, Bronwyn M Kirby, Clair Edson, Mark F Cotton, Richard H Haubrich, Sergei L Kosakovsky Pond, Gert U Van Zyl | Journal Of Clinical Virology : The Official Publication Of The Pan American Society For Clinical Virology | 2014-11-20 |
| Using Genome-scale Models to Predict Biological Capabilities. | Edward J O'Brien, Jonathan M Monk, Bernhard O Palsson | Cell | 2014-11-12 |
| HIV-1 neutralizing antibody response and viral genetic diversity characterized with next generation sequencing. | Christoph C Carter, Gabriel A Wagner, George K Hightower, Gemma Caballero, Pham Phung, Douglas D Richman, Sergei L Kosakovsky Pond, Davey M Smith | Virology | 2014-11-11 |
| Distributed classifier based on genetically engineered bacterial cell cultures. | Andriy Didovyk, Oleg I Kanakov, Mikhail V Ivanchenko, Jeff Hasty, Ramón Huerta, Lev Tsimring | ACS Synthetic Biology | 2014-11-11 |
| Direct capture and heterologous expression of Salinispora natural product genes for the biosynthesis of enterocin. | Bailey Bonet, Robin Teufel, Max Crüsemann, Nadine Ziemert, Bradley S Moore | Journal Of Natural Products | 2014-11-10 |
| Single mutations in sasA enable a simpler ΔcikA gene network architecture with equivalent circadian properties. | Ryan K Shultzaberger, Joseph S Boyd, Takeo Katsuki, Susan S Golden, Ralph J Greenspan | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2014-11-10 |
| Molecular imaging of folate receptor β-positive macrophages during acute lung inflammation. | Wei Han, Rinat Zaynagetdinov, Fiona E Yull, Vasiliy V Polosukhin, Linda A Gleaves, Harikrishna Tanjore, Lisa R Young, Todd E Peterson, H Charles Manning, Lawrence S Prince, Timothy S Blackwell | American Journal Of Respiratory Cell And Molecular Biology | 2014-11-07 |
| Specialized metabolites from the microbiome in health and disease. | Gil Sharon, Neha Garg, Justine Debelius, Rob Knight, Pieter C Dorrestein, Sarkis K Mazmanian | Cell Metabolism | 2014-11-04 |
| Lack of knowledge about mother-to-child HIV transmission prevention in pregnant women at Tijuana General Hospital, Baja California, Mexico. | Chandra M Becka, Enrique Chacón-Cruz, Maria Rosario Araneta, Rolando M Viani | Journal Of The International Association Of Providers Of AIDS Care | 2014-10-31 |
| Neurocognitive change in the era of HIV combination antiretroviral therapy: the longitudinal CHARTER study. | Robert K Heaton, Donald R Franklin, Reena Deutsch, Scott Letendre, Ronald J Ellis, Kaitlin Casaletto, Maria J Marquine, Steven P Woods, Florin Vaida, J Hampton Atkinson, Thomas D Marcotte, J Allen McCutchan, Ann C Collier, Christina M Marra, David B Clifford, Benjamin B Gelman, Ned Sacktor, Susan Morgello, David M Simpson, Ian Abramson, Anthony C Gamst, Christine Fennema-Notestine, David M Smith, Igor Grant, | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2014-10-31 |
| Bistable forespore engulfment in Bacillus subtilis by a zipper mechanism in absence of the cell wall. | Nikola Ojkic, Javier López-Garrido, Kit Pogliano, Robert G Endres | PLoS Computational Biology | 2014-10-30 |
| CRISPR-Cas systems in the marine actinomycete Salinispora: linkages with phage defense, microdiversity and biogeography. | Matthias Wietz, Natalie Millán-Aguiñaga, Paul R Jensen | BMC Genomics | 2014-10-25 |
| Role of the immune system in HIV-associated neuroinflammation and neurocognitive implications. | Suzi Hong, William A Banks | Brain, Behavior, And Immunity | 2014-10-22 |
| Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities. | Chris L Dupont, John P McCrow, Ruben Valas, Ahmed Moustafa, Nathan Walworth, Ursula Goodenough, Robyn Roth, Shane L Hogle, Jing Bai, Zackary I Johnson, Elizabeth Mann, Brian Palenik, Katherine A Barbeau, J Craig Venter, Andrew E Allen | The ISME Journal | 2014-10-21 |
| Myeloid IKKβ promotes antitumor immunity by modulating CCL11 and the innate immune response. | Jinming Yang, Oriana E Hawkins, Whitney Barham, Pavlo Gilchuk, Mark Boothby, Gregory D Ayers, Sebastian Joyce, Michael Karin, Fiona E Yull, Ann Richmond | Cancer Research | 2014-10-21 |
| Characteristics of rural leptospirosis patients admitted to referral hospitals during the 2008 leptospirosis outbreak in Sri Lanka: implications for developing public health control measures. | Suneth B Agampodi, Dhanaseela B Nugegoda, Vasanthi Thevanesam, Joseph M Vinetz | The American Journal Of Tropical Medicine And Hygiene | 2014-10-20 |
| Persistent neurocognitive decline in a clinic sample of hepatitis C virus-infected persons receiving interferon and ribavirin treatment. | Jordan E Cattie, Scott L Letendre, Steven Paul Woods, Fatma Barakat, William Perry, Mariana Cherner, Anya Umlauf, Donald Franklin, Robert K Heaton, Tarek Hassanein, Igor Grant, | Journal Of Neurovirology | 2014-10-18 |
| Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium. | Ryan A LaCroix, Troy E Sandberg, Edward J O'Brien, Jose Utrilla, Ali Ebrahim, Gabriela I Guzman, Richard Szubin, Bernhard O Palsson, Adam M Feist | Applied And Environmental Microbiology | 2014-10-10 |
| Deep sequencing of HetR-bound DNA reveals novel HetR targets in Anabaena sp. strain PCC7120. | Britt L Flaherty, David B F Johnson, James W Golden | BMC Microbiology | 2014-10-03 |
| Apathy is associated with white matter abnormalities in anterior, medial brain regions in persons with HIV infection. | Rujvi Kamat, Gregory G Brown, Khalima Bolden, Christine Fennema-Notestein, Sarah Archibald, Thomas D Marcotte, Scott L Letendre, Ronald J Ellis, Steven Paul Woods, Igor Grant, Robert K Heaton, | Journal Of Clinical And Experimental Neuropsychology | 2014-10-02 |
| Molecular dynamics analysis of antibody recognition and escape by human H1N1 influenza hemagglutinin. | Pek Ieong, Rommie E Amaro, Wilfred W Li | Biophysical Journal | 2014-09-30 |
| Mutual exclusivity of hyaluronan and hyaluronidase in invasive group A Streptococcus. | Anna Henningham, Masaya Yamaguchi, Ramy K Aziz, Kirsten Kuipers, Cosmo Z Buffalo, Samira Dahesh, Biswa Choudhury, Jeremy Van Vleet, Yuka Yamaguchi, Lisa M Seymour, Nouri L Ben Zakour, Lingjun He, Helen V Smith, Keith Grimwood, Scott A Beatson, Partho Ghosh, Mark J Walker, Victor Nizet, Jason N Cole | The Journal Of Biological Chemistry | 2014-09-29 |
| IDEPI: rapid prediction of HIV-1 antibody epitopes and other phenotypic features from sequence data using a flexible machine learning platform. | N Lance Hepler, Konrad Scheffler, Steven Weaver, Ben Murrell, Douglas D Richman, Dennis R Burton, Pascal Poignard, Davey M Smith, Sergei L Kosakovsky Pond | PLoS Computational Biology | 2014-09-25 |
| Genome Sequence of the Microsporidian Species Nematocida sp1 Strain ERTm6 (ATCC PRA-372). | Malina A Bakowski, Margaret Priest, Sarah Young, Christina A Cuomo, Emily R Troemel | Genome Announcements | 2014-09-18 |
| Salinamide F, new depsipeptide antibiotic and inhibitor of bacterial RNA polymerase from a marine-derived Streptomyces sp. | Hossam M Hassan, David Degen, Kyoung Hwa Jang, Richard H Ebright, William Fenical | The Journal Of Antibiotics | 2014-09-17 |
| Supplementation of saturated long-chain fatty acids maintains intestinal eubiosis and reduces ethanol-induced liver injury in mice. | Peng Chen, Manolito Torralba, Justin Tan, Mallory Embree, Karsten Zengler, Peter Stärkel, Jan-Peter van Pijkeren, Jessica DePew, Rohit Loomba, Samuel B Ho, Jasmohan S Bajaj, Ece A Mutlu, Ali Keshavarzian, Hidekazu Tsukamoto, Karen E Nelson, Derrick E Fouts, Bernd Schnabl | Gastroenterology | 2014-09-16 |
| Engagement of myelomonocytic Siglecs by tumor-associated ligands modulates the innate immune response to cancer. | Heinz Läubli, Oliver M T Pearce, Flavio Schwarz, Shoib S Siddiqui, Lingquan Deng, Michal A Stanczak, Liwen Deng, Andrea Verhagen, Patrick Secrest, Chrissy Lusk, Ann G Schwartz, Nissi M Varki, Jack D Bui, Ajit Varki | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2014-09-15 |
| MixGF: spectral probabilities for mixture spectra from more than one peptide. | Jian Wang, Philip E Bourne, Nuno Bandeira | Molecular & Cellular Proteomics : MCP | 2014-09-15 |
| Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli. | Sang Woo Seo, Donghyuk Kim, Haythem Latif, Edward J O'Brien, Richard Szubin, Bernhard O Palsson | Nature Communications | 2014-09-15 |
| Pep2Path: automated mass spectrometry-guided genome mining of peptidic natural products. | Marnix H Medema, Yared Paalvast, Don D Nguyen, Alexey Melnik, Pieter C Dorrestein, Eriko Takano, Rainer Breitling | PLoS Computational Biology | 2014-09-04 |
| Probiotics normalize the gut-brain-microbiota axis in immunodeficient mice. | Carli J Smith, Jacob R Emge, Katrina Berzins, Lydia Lung, Rebecca Khamishon, Paarth Shah, David M Rodrigues, Andrew J Sousa, Colin Reardon, Philip M Sherman, Kim E Barrett, Mélanie G Gareau | American Journal Of Physiology. Gastrointestinal And Liver Physiology | 2014-09-04 |
| The antimicrobial peptide LL-37 facilitates the formation of neutrophil extracellular traps. | Ariane Neumann, Evelien T M Berends, Andreas Nerlich, E Margo Molhoek, Richard L Gallo, Timo Meerloo, Victor Nizet, Hassan Y Naim, Maren von Köckritz-Blickwede | The Biochemical Journal | 2014-09-03 |
| Targeted capture and heterologous expression of the Pseudoalteromonas alterochromide gene cluster in Escherichia coli represents a promising natural product exploratory platform. | Avena C Ross, Lauren E S Gulland, Pieter C Dorrestein, Bradley S Moore | ACS Synthetic Biology | 2014-08-29 |
| Epidemiology of disappearing Plasmodium vivax malaria: a case study in rural Amazonia. | Susana Barbosa, Amanda B Gozze, Nathália F Lima, Camilla L Batista, Melissa da Silva Bastos, Vanessa C Nicolete, Pablo S Fontoura, Raquel M Gonçalves, Susana Ariane S Viana, Maria José Menezes, Kézia Katiani G Scopel, Carlos E Cavasini, Rosely dos Santos Malafronte, Mônica da Silva-Nunes, Joseph M Vinetz, Márcia C Castro, Marcelo U Ferreira | PLoS Neglected Tropical Diseases | 2014-08-28 |
| Regulation of gene expression in diverse cyanobacterial species by using theophylline-responsive riboswitches. | Amy T Ma, Calvin M Schmidt, James W Golden | Applied And Environmental Microbiology | 2014-08-22 |
| Visualizing life with ambient mass spectrometry. | Cheng-Chih Hsu, Pieter C Dorrestein | Current Opinion In Biotechnology | 2014-08-20 |
| Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition. | Yan Wei Lim, Daniel A Cuevas, Genivaldo Gueiros Z Silva, Kristen Aguinaldo, Elizabeth A Dinsdale, Andreas F Haas, Mark Hatay, Savannah E Sanchez, Linda Wegley-Kelly, Bas E Dutilh, Timothy T Harkins, Clarence C Lee, Warren Tom, Stuart A Sandin, Jennifer E Smith, Brian Zgliczynski, Mark J A Vermeij, Forest Rohwer, Robert A Edwards | PeerJ | 2014-08-19 |
| Molecular regulation of effector and memory T cell differentiation. | John T Chang, E John Wherry, Ananda W Goldrath | Nature Immunology | 2014-08-18 |
| RAB11-mediated trafficking in host-pathogen interactions. | Annabel Guichard, Victor Nizet, Ethan Bier | Nature Reviews. Microbiology | 2014-08-15 |
| Hyaluronan breakdown contributes to immune defense against group A Streptococcus. | Nina N Schommer, Jun Muto, Victor Nizet, Richard L Gallo | The Journal Of Biological Chemistry | 2014-08-13 |
| NRPquest: Coupling Mass Spectrometry and Genome Mining for Nonribosomal Peptide Discovery. | Hosein Mohimani, Wei-Ting Liu, Roland D Kersten, Bradley S Moore, Pieter C Dorrestein, Pavel A Pevzner | Journal Of Natural Products | 2014-08-12 |
| One-pot enzymatic synthesis of merochlorin A and B. | Robin Teufel, Leonard Kaysser, Matthew T Villaume, Stefan Diethelm, Mary K Carbullido, Phil S Baran, Bradley S Moore | Angewandte Chemie (International Ed. In English) | 2014-08-12 |
| Host adaptation of a bacterial toxin from the human pathogen Salmonella Typhi. | Lingquan Deng, Jeongmin Song, Xiang Gao, Jiawei Wang, Hai Yu, Xi Chen, Nissi Varki, Yuko Naito-Matsui, Jorge E Galán, Ajit Varki | Cell | 2014-08-08 |
| Dynamic localization of the cyanobacterial circadian clock proteins. | Susan E Cohen, Marcella L Erb, Jangir Selimkhanov, Guogang Dong, Jeff Hasty, Joe Pogliano, Susan S Golden | Current Biology : CB | 2014-08-07 |
| Clinical characteristics associated with Mycoplasma genitalium among female sex workers in Nairobi, Kenya. | Ayodele Gomih-Alakija, Jie Ting, Nelly Mugo, Jessie Kwatampora, Damon Getman, Michael Chitwa, Suha Patel, Mugdha Gokhale, Joshua Kimani, Frieda S Behets, Jennifer S Smith | Journal Of Clinical Microbiology | 2014-08-06 |
| Microbiota of healthy corals are active against fungi in a light-dependent manner. | Wilna J Moree, Oliver J McConnell, Don D Nguyen, Laura M Sanchez, Yu-Liang Yang, Xiling Zhao, Wei-Ting Liu, Paul D Boudreau, Jayashree Srinivasan, Librada Atencio, Javier Ballesteros, Ronnie G Gavilán, Daniel Torres-Mendoza, Héctor M Guzmán, William H Gerwick, Marcelino Gutiérrez, Pieter C Dorrestein | ACS Chemical Biology | 2014-08-06 |
| Matrix-metalloproteinases in head and neck carcinoma-cancer genome atlas analysis and fluorescence imaging in mice. | Samantha J Hauff, Sharat C Raju, Ryan K Orosco, Andrew M Gross, Julio A Diaz-Perez, Elamprakash Savariar, Nadia Nashi, Jonathan Hasselman, Michael Whitney, Jeffrey N Myers, Scott M Lippman, Roger Y Tsien, Trey Ideker, Quyen T Nguyen | Otolaryngology--head And Neck Surgery : Official Journal Of American Academy Of Otolaryngology-Head And Neck Surgery | 2014-08-04 |
| Vaccinia virus binds to the scavenger receptor MARCO on the surface of keratinocytes. | Daniel T MacLeod, Teruaki Nakatsuji, Zhenping Wang, Anna di Nardo, Richard L Gallo | The Journal Of Investigative Dermatology | 2014-08-04 |
| Broad-host-range vector system for synthetic biology and biotechnology in cyanobacteria. | Arnaud Taton, Federico Unglaub, Nicole E Wright, Wei Yue Zeng, Javier Paz-Yepes, Bianca Brahamsha, Brian Palenik, Todd C Peterson, Farzad Haerizadeh, Susan S Golden, James W Golden | Nucleic Acids Research | 2014-07-29 |
| Enzymatic synthesis of polybrominated dioxins from the marine environment. | Vinayak Agarwal, Bradley S Moore | ACS Chemical Biology | 2014-07-28 |
| Generation of an atlas for commodity chemical production in Escherichia coli and a novel pathway prediction algorithm, GEM-Path. | Miguel A Campodonico, Barbara A Andrews, Juan A Asenjo, Bernhard O Palsson, Adam M Feist | Metabolic Engineering | 2014-07-28 |
| Emerging mass spectrometry techniques for the direct analysis of microbial colonies. | Jinshu Fang, Pieter C Dorrestein | Current Opinion In Microbiology | 2014-07-26 |
| Effects of high hydrostatic pressure on coastal bacterial community abundance and diversity. | Angeliki Marietou, Douglas H Bartlett | Applied And Environmental Microbiology | 2014-07-25 |
| Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis. | Dhanashree S Kelkar, Elayne Provost, Raghothama Chaerkady, Babylakshmi Muthusamy, Srikanth S Manda, Tejaswini Subbannayya, Lakshmi Dhevi N Selvan, Chieh-Huei Wang, Keshava K Datta, Sunghee Woo, Sutopa B Dwivedi, Santosh Renuse, Derese Getnet, Tai-Chung Huang, Min-Sik Kim, Sneha M Pinto, Christopher J Mitchell, Anil K Madugundu, Praveen Kumar, Jyoti Sharma, Jayshree Advani, Gourav Dey, Lavanya Balakrishnan, Nazia Syed, Vishalakshi Nanjappa, Yashwanth Subbannayya, Renu Goel, T S Keshava Prasad, Vineet Bafna, Ravi Sirdeshmukh, Harsha Gowda, Charles Wang, Steven D Leach, Akhilesh Pandey | Molecular & Cellular Proteomics : MCP | 2014-07-24 |
| Diet and feeding pattern affect the diurnal dynamics of the gut microbiome. | Amir Zarrinpar, Amandine Chaix, Shibu Yooseph, Satchidananda Panda | Cell Metabolism | 2014-07-24 |
| Singly modified amikacin and tobramycin derivatives show increased rRNA A-site binding and higher potency against resistant bacteria. | Richard J Fair, Lisa S McCoy, Mary E Hensler, Bernice Aguilar, Victor Nizet, Yitzhak Tor | ChemMedChem | 2014-07-23 |
| Global, regional, and national incidence and mortality for HIV, tuberculosis, and malaria during 1990-2013: a systematic analysis for the Global Burden of Disease Study 2013. | Christopher J L Murray, Katrina F Ortblad, Caterina Guinovart, Stephen S Lim, Timothy M Wolock, D Allen Roberts, Emily A Dansereau, Nicholas Graetz, Ryan M Barber, Jonathan C Brown, Haidong Wang, Herbert C Duber, Mohsen Naghavi, Daniel Dicker, Lalit Dandona, Joshua A Salomon, Kyle R Heuton, Kyle Foreman, David E Phillips, Thomas D Fleming, Abraham D Flaxman, Bryan K Phillips, Elizabeth K Johnson, Megan S Coggeshall, Foad Abd-Allah, Semaw Ferede Abera, Jerry P Abraham, Ibrahim Abubakar, Laith J Abu-Raddad, Niveen Me Abu-Rmeileh, Tom Achoki, Austine Olufemi Adeyemo, Arsène Kouablan Adou, José C Adsuar, Emilie Elisabet Agardh, Dickens Akena, Mazin J Al Kahbouri, Deena Alasfoor, Mohammed I Albittar, Gabriel Alcalá-Cerra, Miguel Angel Alegretti, Zewdie Aderaw Alemu, Rafael Alfonso-Cristancho, Samia Alhabib, Raghib Ali, Francois Alla, Peter J Allen, Ubai Alsharif, Elena Alvarez, Nelson Alvis-Guzman, Adansi A Amankwaa, Azmeraw T Amare, Hassan Amini, Walid Ammar, Benjamin O Anderson, Carl Abelardo T Antonio, Palwasha Anwari, Johan Arnlöv, Valentina S Arsic Arsenijevic, Ali Artaman, Rana J Asghar, Reza Assadi, Lydia S Atkins, Alaa Badawi, Kalpana Balakrishnan, Amitava Banerjee, Sanjay Basu, Justin Beardsley, Tolesa Bekele, Michelle L Bell, Eduardo Bernabe, Tariku Jibat Beyene, Neeraj Bhala, Ashish Bhalla, Zulfiqar A Bhutta, Aref Bin Abdulhak, Agnes Binagwaho, Jed D Blore, Berrak Bora Basara, Dipan Bose, Michael Brainin, Nicholas Breitborde, Carlos A Castañeda-Orjuela, Ferrán Catalá-López, Vineet K Chadha, Jung-Chen Chang, Peggy Pei-Chia Chiang, Ting-Wu Chuang, Mercedes Colomar, Leslie Trumbull Cooper, Cyrus Cooper, Karen J Courville, Benjamin C Cowie, Michael H Criqui, Rakhi Dandona, Anand Dayama, Diego De Leo, Louisa Degenhardt, Borja Del Pozo-Cruz, Kebede Deribe, Don C Des Jarlais, Muluken Dessalegn, Samath D Dharmaratne, Uğur Dilmen, Eric L Ding, Tim R Driscoll, Adnan M Durrani, Richard G Ellenbogen, Sergey Petrovich Ermakov, Alireza Esteghamati, Emerito Jose A Faraon, Farshad Farzadfar, Seyed-Mohammad Fereshtehnejad, Daniel Obadare Fijabi, Mohammad H Forouzanfar, Urbano Fra Paleo, Lynne Gaffikin, Amiran Gamkrelidze, Fortuné Gbètoho Gankpé, Johanna M Geleijnse, Bradford D Gessner, Katherine B Gibney, Ibrahim Abdelmageem Mohamed Ginawi, Elizabeth L Glaser, Philimon Gona, Atsushi Goto, Hebe N Gouda, Harish Chander Gugnani, Rajeev Gupta, Rahul Gupta, Nima Hafezi-Nejad, Randah Ribhi Hamadeh, Mouhanad Hammami, Graeme J Hankey, Hilda L Harb, Josep Maria Haro, Rasmus Havmoeller, Simon I Hay, Mohammad T Hedayati, Ileana B Heredia Pi, Hans W Hoek, John C Hornberger, H Dean Hosgood, Peter J Hotez, Damian G Hoy, John J Huang, Kim M Iburg, Bulat T Idrisov, Kaire Innos, Kathryn H Jacobsen, Panniyammakal Jeemon, Paul N Jensen, Vivekanand Jha, Guohong Jiang, Jost B Jonas, Knud Juel, Haidong Kan, Ida Kankindi, Nadim E Karam, André Karch, Corine Kakizi Karema, Anil Kaul, Norito Kawakami, Dhruv S Kazi, Andrew H Kemp, Andre Pascal Kengne, Andre Keren, Maia Kereselidze, Yousef Saleh Khader, Shams Eldin Ali Hassan Khalifa, Ejaz Ahmed Khan, Young-Ho Khang, Irma Khonelidze, Yohannes Kinfu, Jonas M Kinge, Luke Knibbs, Yoshihiro Kokubo, S Kosen, Barthelemy Kuate Defo, Veena S Kulkarni, Chanda Kulkarni, Kaushalendra Kumar, Ravi B Kumar, G Anil Kumar, Gene F Kwan, Taavi Lai, Arjun Lakshmana Balaji, Hilton Lam, Qing Lan, Van C Lansingh, Heidi J Larson, Anders Larsson, Jong-Tae Lee, James Leigh, Mall Leinsalu, Ricky Leung, Yichong Li, Yongmei Li, Graça Maria Ferreira De Lima, Hsien-Ho Lin, Steven E Lipshultz, Shiwei Liu, Yang Liu, Belinda K Lloyd, Paulo A Lotufo, Vasco Manuel Pedro Machado, Jennifer H Maclachlan, Carlos Magis-Rodriguez, Marek Majdan, Christopher Chabila Mapoma, Wagner Marcenes, Melvin Barrientos Marzan, Joseph R Masci, Mohammad Taufiq Mashal, Amanda J Mason-Jones, Bongani M Mayosi, Tasara T Mazorodze, Abigail Cecilia Mckay, Peter A Meaney, Man Mohan Mehndiratta, Fabiola Mejia-Rodriguez, Yohannes Adama Melaku, Ziad A Memish, Walter Mendoza, Ted R Miller, Edward J Mills, Karzan Abdulmuhsin Mohammad, Ali H Mokdad, Glen Liddell Mola, Lorenzo Monasta, Marcella Montico, Ami R Moore, Rintaro Mori, Wilkister Nyaora Moturi, Mitsuru Mukaigawara, Kinnari S Murthy, Aliya Naheed, Kovin S Naidoo, Luigi Naldi, Vinay Nangia, K M Venkat Narayan, Denis Nash, Chakib Nejjari, Robert G Nelson, Sudan Prasad Neupane, Charles R Newton, Marie Ng, Muhammad Imran Nisar, Sandra Nolte, Ole F Norheim, Vincent Nowaseb, Luke Nyakarahuka, In-Hwan Oh, Takayoshi Ohkubo, Bolajoko O Olusanya, Saad B Omer, John Nelson Opio, Orish Ebere Orisakwe, Jeyaraj D Pandian, Christina Papachristou, Angel J Paternina Caicedo, Scott B Patten, Vinod K Paul, Boris Igor Pavlin, Neil Pearce, David M Pereira, Aslam Pervaiz, Konrad Pesudovs, Max Petzold, Farshad Pourmalek, Dima Qato, Amado D Quezada, D Alex Quistberg, Anwar Rafay, Kazem Rahimi, Vafa Rahimi-Movaghar, Sajjad Ur Rahman, Murugesan Raju, Saleem M Rana, Homie Razavi, Robert Quentin Reilly, Giuseppe Remuzzi, Jan Hendrik Richardus, Luca Ronfani, Nobhojit Roy, Nsanzimana Sabin, Mohammad Yahya Saeedi, Mohammad Ali Sahraian, Genesis May J Samonte, Monika Sawhney, Ione J C Schneider, David C Schwebel, Soraya Seedat, Sadaf G Sepanlou, Edson E Servan-Mori, Sara Sheikhbahaei, Kenji Shibuya, Hwashin Hyun Shin, Ivy Shiue, Rupak Shivakoti, Inga Dora Sigfusdottir, Donald H Silberberg, Andrea P Silva, Edgar P Simard, Jasvinder A Singh, Vegard Skirbekk, Karen Sliwa, Samir Soneji, Sergey S Soshnikov, Chandrashekhar T Sreeramareddy, Vasiliki Kalliopi Stathopoulou, Konstantinos Stroumpoulis, Soumya Swaminathan, Bryan L Sykes, Karen M Tabb, Roberto Tchio Talongwa, Eric Yeboah Tenkorang, Abdullah Sulieman Terkawi, Alan J Thomson, Andrew L Thorne-Lyman, Jeffrey A Towbin, Jefferson Traebert, Bach X Tran, Zacharie Tsala Dimbuene, Miltiadis Tsilimbaris, Uche S Uchendu, Kingsley N Ukwaja, Selen Begüm Uzun, Andrew J Vallely, Tommi J Vasankari, N Venketasubramanian, Francesco S Violante, Vasiliy Victorovich Vlassov, Stein Emil Vollset, Stephen Waller, Mitchell T Wallin, Linhong Wang, XiaoRong Wang, Yanping Wang, Scott Weichenthal, Elisabete Weiderpass, Robert G Weintraub, Ronny Westerman, Richard A White, James D Wilkinson, Thomas Neil Williams, Solomon Meseret Woldeyohannes, John Q Wong, Gelin Xu, Yang C Yang, Yuichiro Yano, Gokalp Kadri Yentur, Paul Yip, Naohiro Yonemoto, Seok-Jun Yoon, Mustafa Younis, Chuanhua Yu, Kim Yun Jin, Maysaa El Sayed Zaki, Yong Zhao, Yingfeng Zheng, Maigeng Zhou, Jun Zhu, Xiao Nong Zou, Alan D Lopez, Theo Vos | Lancet (London, England) | 2014-07-22 |
| Glycan-dependent viral infection in infants and the role of human milk oligosaccharides. | Sabrina Etzold, Lars Bode | Current Opinion In Virology | 2014-07-19 |
| LipidWrapper: an algorithm for generating large-scale membrane models of arbitrary geometry. | Jacob D Durrant, Rommie E Amaro | PLoS Computational Biology | 2014-07-17 |
| Potent neutralization of vaccinia virus by divergent murine antibodies targeting a common site of vulnerability in L1 protein. | Thomas Kaever, Xiangzhi Meng, Michael H Matho, Andrew Schlossman, Sheng Li, Inbal Sela-Culang, Yanay Ofran, Mark Buller, Ryan W Crump, Scott Parker, April Frazier, Shane Crotty, Dirk M Zajonc, Bjoern Peters, Yan Xiang | Journal Of Virology | 2014-07-16 |
| Role for streptococcal collagen-like protein 1 in M1T1 group A Streptococcus resistance to neutrophil extracellular traps. | Simon Döhrmann, Sabina Anik, Joshua Olson, Ericka L Anderson, Neelou Etesami, Hyewon No, Joshua Snipper, Victor Nizet, Cheryl Y M Okumura | Infection And Immunity | 2014-07-14 |
| Molecular bases and role of viruses in the human microbiome. | Shira R Abeles, David T Pride | Journal Of Molecular Biology | 2014-07-11 |
| Antimicrobial salvage therapy for persistent staphylococcal bacteremia using daptomycin plus ceftaroline. | George Sakoulas, Pamela A Moise, Anthony M Casapao, Poochit Nonejuie, Joshua Olson, Cheryl Y M Okumura, Michael J Rybak, Ravina Kullar, Abhay Dhand, Warren E Rose, Debra A Goff, Adam M Bressler, Yuman Lee, Joseph Pogliano, Scott Johns, Glenn W Kaatz, John R Ebright, Victor Nizet | Clinical Therapeutics | 2014-07-10 |
| Evolution of Escherichia coli to 42 °C and subsequent genetic engineering reveals adaptive mechanisms and novel mutations. | Troy E Sandberg, Margit Pedersen, Ryan A LaCroix, Ali Ebrahim, Mads Bonde, Markus J Herrgard, Bernhard O Palsson, Morten Sommer, Adam M Feist | Molecular Biology And Evolution | 2014-07-10 |
| Modelling Fanconi anemia pathogenesis and therapeutics using integration-free patient-derived iPSCs. | Guang-Hui Liu, Keiichiro Suzuki, Mo Li, Jing Qu, Nuria Montserrat, Carolina Tarantino, Ying Gu, Fei Yi, Xiuling Xu, Weiqi Zhang, Sergio Ruiz, Nongluk Plongthongkum, Kun Zhang, Shigeo Masuda, Emmanuel Nivet, Yuji Tsunekawa, Rupa Devi Soligalla, April Goebl, Emi Aizawa, Na Young Kim, Jessica Kim, Ilir Dubova, Ying Li, Ruotong Ren, Chris Benner, Antonio Del Sol, Juan Bueren, Juan Pablo Trujillo, Jordi Surralles, Enrico Cappelli, Carlo Dufour, Concepcion Rodriguez Esteban, Juan Carlos Izpisua Belmonte | Nature Communications | 2014-07-07 |
| The interplay between Siglecs and sialylated pathogens. | Yung-Chi Chang, Victor Nizet | Glycobiology | 2014-07-04 |
| HIF transcription factors, inflammation, and immunity. | Asis Palazon, Ananda W Goldrath, Victor Nizet, Randall S Johnson | Immunity | 2014-07-02 |
| Editorial overview: Systems biology: Advances in multi-scale systems biology applications. | Victor Sourjik, Christian Metallo | Current Opinion In Biotechnology | 2014-07-01 |
| Machine-learning techniques applied to antibacterial drug discovery. | Jacob D Durrant, Rommie E Amaro | Chemical Biology & Drug Design | 2014-07-01 |
| Minimal metabolic pathway structure is consistent with associated biomolecular interactions. | Aarash Bordbar, Harish Nagarajan, Nathan E Lewis, Haythem Latif, Ali Ebrahim, Stephen Federowicz, Jan Schellenberger, Bernhard O Palsson | Molecular Systems Biology | 2014-07-01 |
| Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors. | Linda W Kelly, Gareth J Williams, Katie L Barott, Craig A Carlson, Elizabeth A Dinsdale, Robert A Edwards, Andreas F Haas, Matthew Haynes, Yan Wei Lim, Tracey McDole, Craig E Nelson, Enric Sala, Stuart A Sandin, Jennifer E Smith, Mark J A Vermeij, Merry Youle, Forest Rohwer | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2014-06-30 |
| Characterization of bacteriophage communities and CRISPR profiles from dental plaque. | Mayuri Naidu, Refugio Robles-Sikisaka, Shira R Abeles, Tobias K Boehm, David T Pride | BMC Microbiology | 2014-06-30 |
| Biosynthesis of polybrominated aromatic organic compounds by marine bacteria. | Vinayak Agarwal, Abrahim A El Gamal, Kazuya Yamanaka, Dennis Poth, Roland D Kersten, Michelle Schorn, Eric E Allen, Bradley S Moore | Nature Chemical Biology | 2014-06-29 |
| Id2 and Id3 maintain the regulatory T cell pool to suppress inflammatory disease. | Masaki Miyazaki, Kazuko Miyazaki, Shuwen Chen, Manami Itoi, Marina Miller, Li-Fan Lu, Nissi Varki, Aaron N Chang, David H Broide, Cornelis Murre | Nature Immunology | 2014-06-29 |
| Genetics. Predicting microbial growth. | Jonathan Monk, Bernhard O Palsson | Science (New York, N.Y.) | 2014-06-28 |
| The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. | Patrick J Keeling, Fabien Burki, Heather M Wilcox, Bassem Allam, Eric E Allen, Linda A Amaral-Zettler, E Virginia Armbrust, John M Archibald, Arvind K Bharti, Callum J Bell, Bank Beszteri, Kay D Bidle, Connor T Cameron, Lisa Campbell, David A Caron, Rose Ann Cattolico, Jackie L Collier, Kathryn Coyne, Simon K Davy, Phillipe Deschamps, Sonya T Dyhrman, Bente Edvardsen, Ruth D Gates, Christopher J Gobler, Spencer J Greenwood, Stephanie M Guida, Jennifer L Jacobi, Kjetill S Jakobsen, Erick R James, Bethany Jenkins, Uwe John, Matthew D Johnson, Andrew R Juhl, Anja Kamp, Laura A Katz, Ronald Kiene, Alexander Kudryavtsev, Brian S Leander, Senjie Lin, Connie Lovejoy, Denis Lynn, Adrian Marchetti, George McManus, Aurora M Nedelcu, Susanne Menden-Deuer, Cristina Miceli, Thomas Mock, Marina Montresor, Mary Ann Moran, Shauna Murray, Govind Nadathur, Satoshi Nagai, Peter B Ngam, Brian Palenik, Jan Pawlowski, Giulio Petroni, Gwenael Piganeau, Matthew C Posewitz, Karin Rengefors, Giovanna Romano, Mary E Rumpho, Tatiana Rynearson, Kelly B Schilling, Declan C Schroeder, Alastair G B Simpson, Claudio H Slamovits, David R Smith, G Jason Smith, Sarah R Smith, Heidi M Sosik, Peter Stief, Edward Theriot, Scott N Twary, Pooja E Umale, Daniel Vaulot, Boris Wawrik, Glen L Wheeler, William H Wilson, Yan Xu, Adriana Zingone, Alexandra Z Worden | PLoS Biology | 2014-06-24 |
| Hypoxia-Inducible Factor (HIF) as a Pharmacological Target for Prevention and Treatment of Infectious Diseases. | Tamara Bhandari, Victor Nizet | Infectious Diseases And Therapy | 2014-06-24 |
| Ubiquitin-mediated response to microsporidia and virus infection in C. elegans. | Malina A Bakowski, Christopher A Desjardins, Margery G Smelkinson, Tiffany L Dunbar, Tiffany A Dunbar, Isaac F Lopez-Moyado, Scott A Rifkin, Christina A Cuomo, Emily R Troemel | PLoS Pathogens | 2014-06-19 |
| ExSPAnder: a universal repeat resolver for DNA fragment assembly. | Andrey D Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son Pham, Anton Korobeynikov, Alla Lapidus, Pavel A Pevzner | Bioinformatics (Oxford, England) | 2014-06-17 |
| Inferring gene ontologies from pairwise similarity data. | Michael Kramer, Janusz Dutkowski, Michael Yu, Vineet Bafna, Trey Ideker | Bioinformatics (Oxford, England) | 2014-06-17 |
| Melanocytes and melanin represent a first line of innate immunity against Candida albicans. | Cecilia V Tapia, Maryanne Falconer, Fabián Tempio, Felipe Falcón, Mercedes López, Marisol Fuentes, Claudio Alburquenque, José Amaro, Sergio A Bucarey, Anna Di Nardo | Medical Mycology | 2014-06-15 |
| Evolutionary origins of human herpes simplex viruses 1 and 2. | Joel O Wertheim, Martin D Smith, Davey M Smith, Konrad Scheffler, Sergei L Kosakovsky Pond | Molecular Biology And Evolution | 2014-06-10 |
| KAF156 is an antimalarial clinical candidate with potential for use in prophylaxis, treatment, and prevention of disease transmission. | Kelli L Kuhen, Arnab K Chatterjee, Matthias Rottmann, Kerstin Gagaring, Rachel Borboa, Jennifer Buenviaje, Zhong Chen, Carolyn Francek, Tao Wu, Advait Nagle, S Whitney Barnes, David Plouffe, Marcus C S Lee, David A Fidock, Wouter Graumans, Marga van de Vegte-Bolmer, Geert J van Gemert, Grennady Wirjanata, Boni Sebayang, Jutta Marfurt, Bruce Russell, Rossarin Suwanarusk, Ric N Price, Francois Nosten, Anchalee Tungtaeng, Montip Gettayacamin, Jetsumon Sattabongkot, Jennifer Taylor, John R Walker, David Tully, Kailash P Patra, Erika L Flannery, Joseph M Vinetz, Laurent Renia, Robert W Sauerwein, Elizabeth A Winzeler, Richard J Glynne, Thierry T Diagana | Antimicrobial Agents And Chemotherapy | 2014-06-09 |
| Conservation of streptococcal CRISPRs on human skin and saliva. | Refugio Robles-Sikisaka, Mayuri Naidu, Melissa Ly, Julia Salzman, Shira R Abeles, Tobias K Boehm, David T Pride | BMC Microbiology | 2014-06-06 |
| Using HIV networks to inform real time prevention interventions. | Susan J Little, Sergei L Kosakovsky Pond, Christy M Anderson, Jason A Young, Joel O Wertheim, Sanjay R Mehta, Susanne May, Davey M Smith | PloS One | 2014-06-05 |
| A protein-conjugate approach to develop a monoclonal antibody-based antigen detection test for the diagnosis of human brucellosis. | Kailash P Patra, Mayuko Saito, Vidya L Atluri, Hortensia G Rolán, Briana Young, Tobias Kerrinnes, Henk Smits, Jessica N Ricaldi, Eduardo Gotuzzo, Robert H Gilman, Renee M Tsolis, Joseph M Vinetz | PLoS Neglected Tropical Diseases | 2014-06-05 |
| Cathelicidin host defence peptide augments clearance of pulmonary Pseudomonas aeruginosa infection by its influence on neutrophil function in vivo. | Paula E Beaumont, Brian McHugh, Emily Gwyer Findlay, Annie Mackellar, Karen J Mackenzie, Richard L Gallo, John R W Govan, A John Simpson, Donald J Davidson | PloS One | 2014-06-02 |
| PTEN and PI-3 kinase inhibitors control LPS signaling and the lymphoproliferative response in the CD19+ B cell compartment. | Alok R Singh, Susan K Peirce, Shweta Joshi, Donald L Durden | Experimental Cell Research | 2014-05-29 |
| Rosacea: part I. Introduction, categorization, histology, pathogenesis, and risk factors. | Aimee M Two, Wiggin Wu, Richard L Gallo, Tissa R Hata | Journal Of The American Academy Of Dermatology | 2014-05-29 |
| Extracellular adenosine regulates colitis through effects on lymphoid and nonlymphoid cells. | Courtney C Kurtz, Ioannis Drygiannakis, Makoto Naganuma, Sanford Feldman, Vasileios Bekiaris, Joel Linden, Carl F Ware, Peter B Ernst | American Journal Of Physiology. Gastrointestinal And Liver Physiology | 2014-05-29 |
| Automated genome mining of ribosomal peptide natural products. | Hosein Mohimani, Roland D Kersten, Wei-Ting Liu, Mingxun Wang, Samuel O Purvine, Si Wu, Heather M Brewer, Ljiljana Pasa-Tolic, Nuno Bandeira, Bradley S Moore, Pavel A Pevzner, Pieter C Dorrestein | ACS Chemical Biology | 2014-05-23 |
| Altered oral viral ecology in association with periodontal disease. | Melissa Ly, Shira R Abeles, Tobias K Boehm, Refugio Robles-Sikisaka, Mayuri Naidu, Tasha Santiago-Rodriguez, David T Pride | MBio | 2014-05-20 |
| The small GTPase RAB-11 directs polarized exocytosis of the intracellular pathogen N. parisii for fecal-oral transmission from C. elegans. | Suzannah C Szumowski, Michael R Botts, John J Popovich, Margery G Smelkinson, Emily R Troemel | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2014-05-19 |
| Tropospheric winds from northeastern China carry the etiologic agent of Kawasaki disease from its source to Japan. | Xavier Rodó, Roger Curcoll, Marguerite Robinson, Joan Ballester, Jane C Burns, Daniel R Cayan, W Ian Lipkin, Brent L Williams, Mara Couto-Rodriguez, Yosikazu Nakamura, Ritei Uehara, Hiroshi Tanimoto, Josep-Anton Morguí | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2014-05-19 |
| Host-microbiome interactions in alcoholic liver disease. | Peng Chen, Bernd Schnabl | Gut And Liver | 2014-05-16 |
| In-vivo real-time control of protein expression from endogenous and synthetic gene networks. | Filippo Menolascina, Gianfranco Fiore, Emanuele Orabona, Luca De Stefano, Mike Ferry, Jeff Hasty, Mario di Bernardo, Diego di Bernardo | PLoS Computational Biology | 2014-05-15 |
| Ecotype diversity and conversion in Photobacterium profundum strains. | Federico M Lauro, Emiley A Eloe-Fadrosh, Taylor K S Richter, Nicola Vitulo, Steven Ferriera, Justin H Johnson, Douglas H Bartlett | PloS One | 2014-05-13 |
| Purification and characterization of the Staphylococcus aureus bacillithiol transferase BstA. | Varahenage R Perera, Gerald L Newton, Jonathan M Parnell, Elizabeth A Komives, Kit Pogliano | Biochimica Et Biophysica Acta | 2014-05-10 |
| Optimizing genome-scale network reconstructions. | Jonathan Monk, Juan Nogales, Bernhard O Palsson | Nature Biotechnology | 2014-05-10 |
| An integrated map of HIV-human protein complexes that facilitate viral infection. | Dorothea Emig-Agius, Kevin Olivieri, Lars Pache, Hsin Ling Shih, Olga Pustovalova, Marina Bessarabova, John A T Young, Sumit K Chanda, Trey Ideker | PloS One | 2014-05-09 |
| Associations of host genetic variants on CD4⁺ lymphocyte count and plasma HIV-1 RNA in antiretroviral naïve children. | Min Qin, Sean Brummel, Kumud K Singh, Terence Fenton, Stephen A Spector | The Pediatric Infectious Disease Journal | 2014-05-07 |
| Siglec-5 and Siglec-14 are polymorphic paired receptors that modulate neutrophil and amnion signaling responses to group B Streptococcus. | Syed Raza Ali, Jerry J Fong, Aaron F Carlin, Tamara D Busch, Rebecka Linden, Takashi Angata, Thomas Areschoug, Mana Parast, Nissi Varki, Jeffrey Murray, Victor Nizet, Ajit Varki | The Journal Of Experimental Medicine | 2014-05-05 |
| Role of macrophage sialoadhesin in host defense against the sialylated pathogen group B Streptococcus. | Yung-Chi Chang, Joshua Olson, Aaron Louie, Paul R Crocker, Ajit Varki, Victor Nizet | Journal Of Molecular Medicine (Berlin, Germany) | 2014-05-03 |
| Transcription inhibition by the depsipeptide antibiotic salinamide A. | David Degen, Yu Feng, Yu Zhang, Katherine Y Ebright, Yon W Ebright, Matthew Gigliotti, Hanif Vahedian-Movahed, Sukhendu Mandal, Meliza Talaue, Nancy Connell, Eddy Arnold, William Fenical, Richard H Ebright | ELife | 2014-04-30 |
| Cytomegalovirus replication in semen is associated with higher levels of proviral HIV DNA and CD4+ T cell activation during antiretroviral treatment. | Sara Gianella, Marta Massanella, Douglas D Richman, Susan J Little, Celsa A Spina, Milenka V Vargas, Steven M Lada, Eric S Daar, Michael P Dube, Richard H Haubrich, Sheldon R Morris, Davey M Smith, | Journal Of Virology | 2014-04-30 |
| Marinopyrrole derivatives as potential antibiotic agents against methicillin-resistant Staphylococcus aureus (III). | Yan Liu, Nina M Haste, Wdee Thienphrapa, Jerry Li, Victor Nizet, Mary Hensler, Rongshi Li | Marine Drugs | 2014-04-30 |
| Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens. | Adam M Feist, Harish Nagarajan, Amelia-Elena Rotaru, Pier-Luc Tremblay, Tian Zhang, Kelly P Nevin, Derek R Lovley, Karsten Zengler | PLoS Computational Biology | 2014-04-24 |
| Finding the missing links among metabolites, microbes, and the host. | Pieter C Dorrestein, Sarkis K Mazmanian, Rob Knight | Immunity | 2014-04-21 |
| Anthracimycin activity against contemporary methicillin-resistant Staphylococcus aureus. | Mary E Hensler, Kyoung Hwa Jang, Wdee Thienphrapa, Lisa Vuong, Dan N Tran, Evaristus Soubih, Leo Lin, Nina M Haste, Mark L Cunningham, Bryan P Kwan, Karen Joy Shaw, William Fenical, Victor Nizet | The Journal Of Antibiotics | 2014-04-16 |
| Antileukemic activity and mechanism of drug resistance to the marine Salinispora tropica proteasome inhibitor salinosporamide A (Marizomib). | Denise Niewerth, Gerrit Jansen, Lesley F V Riethoff, Johan van Meerloo, Andrew J Kale, Bradley S Moore, Yehuda G Assaraf, Janet L Anderl, Sonja Zweegman, Gertjan J L Kaspers, Jacqueline Cloos | Molecular Pharmacology | 2014-04-15 |
| Single bacterial strain capable of significant contribution to carbon cycling in the surface ocean. | Byron E Pedler, Lihini I Aluwihare, Farooq Azam | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2014-04-14 |
| Determining the control circuitry of redox metabolism at the genome-scale. | Stephen Federowicz, Donghyuk Kim, Ali Ebrahim, Joshua Lerman, Harish Nagarajan, Byung-kwan Cho, Karsten Zengler, Bernhard Palsson | PLoS Genetics | 2014-04-03 |
| C/EBPα regulates macrophage activation and systemic metabolism. | Bonggi Lee, Liping Qiao, Min Lu, Hyung Sun Yoo, Wai Cheung, Robert Mak, Jerome Schaack, Gen-Sheng Feng, Nai-Wen Chi, Jerrold M Olefsky, Jianhua Shao | American Journal Of Physiology. Endocrinology And Metabolism | 2014-04-01 |
| From genomes to societies: a holistic view of determinants of human health. | Yuyan Shi, Sheng Zhong | Current Opinion In Biotechnology | 2014-03-28 |
| Transplanting a fibrogenic microbiota. | Bernd Schnabl | Hepatology (Baltimore, Md.) | 2014-03-27 |
| Ecto-5'-nucleotidase (CD73) regulates host inflammatory responses and exacerbates murine salmonellosis. | M Samiul Alam, Jennifer L Kuo, Peter B Ernst, Victoria Derr-Castillo, Marion Pereira, Dennis Gaines, Matthew Costales, Elmer Bigley, Kristina Williams | Scientific Reports | 2014-03-27 |
| The classical lancefield antigen of group a Streptococcus is a virulence determinant with implications for vaccine design. | Nina M van Sorge, Jason N Cole, Kirsten Kuipers, Anna Henningham, Ramy K Aziz, Ana Kasirer-Friede, Leo Lin, Evelien T M Berends, Mark R Davies, Gordon Dougan, Fan Zhang, Samira Dahesh, Laura Shaw, Jennifer Gin, Madeleine Cunningham, Joseph A Merriman, Julia Hütter, Bernd Lepenies, Suzan H M Rooijakkers, Richard Malley, Mark J Walker, Sanford J Shattil, Patrick M Schlievert, Biswa Choudhury, Victor Nizet | Cell Host & Microbe | 2014-03-26 |
| Metabolic activation of intrahepatic CD8+ T cells and NKT cells causes nonalcoholic steatohepatitis and liver cancer via cross-talk with hepatocytes. | Monika Julia Wolf, Arlind Adili, Kira Piotrowitz, Zeinab Abdullah, Yannick Boege, Kerstin Stemmer, Marc Ringelhan, Nicole Simonavicius, Michèle Egger, Dirk Wohlleber, Anna Lorentzen, Claudia Einer, Sabine Schulz, Thomas Clavel, Ulrike Protzer, Christoph Thiele, Hans Zischka, Holger Moch, Matthias Tschöp, Alexei V Tumanov, Dirk Haller, Kristian Unger, Michael Karin, Manfred Kopf, Percy Knolle, Achim Weber, Mathias Heikenwalder | Cancer Cell | 2014-03-21 |
| Human oral viruses are personal, persistent and gender-consistent. | Shira R Abeles, Refugio Robles-Sikisaka, Melissa Ly, Andrew G Lum, Julia Salzman, Tobias K Boehm, David T Pride | The ISME Journal | 2014-03-20 |
| Human cathelicidin LL-37 resistance and increased daptomycin MIC in methicillin-resistant Staphylococcus aureus strain USA600 (ST45) are associated with increased mortality in a hospital setting. | George Sakoulas, Kripa Guram, Katherine Reyes, Victor Nizet, Marcus Zervos | Journal Of Clinical Microbiology | 2014-03-19 |
| Cell biology at the host-microbe interface. | Emily Troemel, Raphael H Valdivia | Molecular Biology Of The Cell | 2014-03-15 |
| Risk factors for Kaposi's sarcoma among HIV-positive individuals in a case control study in Cameroon. | Kristen Stolka, Paul Ndom, Jennifer Hemingway-Foday, Jeniffer Iriondo-Perez, Wendell Miley, Nazzarena Labo, Jennifer Stella, Mahamat Abassora, Godfrey Woelk, Robin Ryder, Denise Whitby, Jennifer S Smith | Cancer Epidemiology | 2014-03-13 |
| Using a combined computational-experimental approach to predict antibody-specific B cell epitopes. | Inbal Sela-Culang, Mohammed Rafii-El-Idrissi Benhnia, Michael H Matho, Thomas Kaever, Matt Maybeno, Andrew Schlossman, Guy Nimrod, Sheng Li, Yan Xiang, Dirk Zajonc, Shane Crotty, Yanay Ofran, Bjoern Peters | Structure (London, England : 1993) | 2014-03-13 |
| The intestinal metabolome: an intersection between microbiota and host. | Luke K Ursell, Henry J Haiser, Will Van Treuren, Neha Garg, Lavanya Reddivari, Jairam Vanamala, Pieter C Dorrestein, Peter J Turnbaugh, Rob Knight | Gastroenterology | 2014-03-11 |
| Diversity and evolution of secondary metabolism in the marine actinomycete genus Salinispora. | Nadine Ziemert, Anna Lechner, Matthias Wietz, Natalie Millán-Aguiñaga, Krystle L Chavarria, Paul Robert Jensen | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2014-03-10 |
| Lipopeptides from the tropical marine cyanobacterium Symploca sp. | Emily Mevers, F P Jake Haeckl, Paul D Boudreau, Tara Byrum, Pieter C Dorrestein, Frederick A Valeriote, William H Gerwick | Journal Of Natural Products | 2014-03-03 |
| Early specification of CD8+ T lymphocyte fates during adaptive immunity revealed by single-cell gene-expression analyses. | Janilyn Arsenio, Boyko Kakaradov, Patrick J Metz, Stephanie H Kim, Gene W Yeo, John T Chang | Nature Immunology | 2014-03-02 |
| The iron stimulon and fur regulon of Geobacter sulfurreducens and their role in energy metabolism. | Mallory Embree, Yu Qiu, Wendy Shieu, Harish Nagarajan, Regina O'Neil, Derek Lovley, Karsten Zengler | Applied And Environmental Microbiology | 2014-02-28 |
| Cerebrospinal fluid can be used for HIV genotyping when it fails in blood. | Indianara Rotta, Sonia Mara Raboni, Cléa Elisa Lopes Ribeiro, Maristela Riedel, Maria da Graça Winhescki, Davey M Smith, Ronald J Ellis, Sérgio Monteiro de Almeida | Arquivos De Neuro-psiquiatria | 2014-02-26 |
| Positive regulation of TRAF6-dependent innate immune responses by protein phosphatase PP1-γ. | Amanda M Opaluch, Monika Schneider, Chih-yuan Chiang, Quy T Nguyen, Ana M Maestre, Lubbertus C F Mulder, Ismael Secundino, Paul D De Jesus, Renate König, Viviana Simon, Victor Nizet, Graham MacLeod, Susannah Varmuza, Ana Fernandez-Sesma, Sumit K Chanda | PloS One | 2014-02-20 |
| An active lifestyle is associated with better neurocognitive functioning in adults living with HIV infection. | Pariya L Fazeli, Steven Paul Woods, Robert K Heaton, Anya Umlauf, Ben Gouaux, Debra Rosario, Raeanne C Moore, Igor Grant, David J Moore, | Journal Of Neurovirology | 2014-02-20 |
| Transcription factor binding site analysis identifies FOXO transcription factors as regulators of the cutaneous wound healing process. | Karl Markus Roupé, Srinivas Veerla, Joshua Olson, Erica L Stone, Ole E Sørensen, Stephen M Hedrick, Victor Nizet | PloS One | 2014-02-19 |
| Involvement of a non-human sialic Acid in human cancer. | Annie N Samraj, Heinz Läubli, Nissi Varki, Ajit Varki | Frontiers In Oncology | 2014-02-19 |
| Nod2 deficiency protects mice from cholestatic liver disease by increasing renal excretion of bile acids. | Lirui Wang, Phillipp Hartmann, Michael Haimerl, Sai P Bathena, Christopher Sjöwall, Sven Almer, Yazen Alnouti, Alan F Hofmann, Bernd Schnabl | Journal Of Hepatology | 2014-02-19 |
| IL-6 and related cytokines as the critical lynchpins between inflammation and cancer. | Koji Taniguchi, Michael Karin | Seminars In Immunology | 2014-02-16 |
| Genomic standards consortium projects. | Dawn Field, Peter Sterk, Renzo Kottmann, J Wim De Smet, Linda Amaral-Zettler, Guy Cochrane, James R Cole, Neil Davies, Peter Dawyndt, George M Garrity, Jack A Gilbert, Frank Oliver Glöckner, Lynette Hirschman, Hans-Peter Klenk, Rob Knight, Nikos Kyrpides, Folker Meyer, Ilene Karsch-Mizrachi, Norman Morrison, Robert Robbins, Inigo San Gil, Susanna Sansone, Lynn Schriml, Tatiana Tatusova, Dave Ussery, Pelin Yilmaz, Owen White, John Wooley, Gregory Caporaso | Standards In Genomic Sciences | 2014-02-15 |
| Impact of a transposon insertion in phzF2 on the specialized metabolite production and interkingdom interactions of Pseudomonas aeruginosa. | Vanessa V Phelan, Wilna J Moree, Julieta Aguilar, Dale S Cornett, Alexandra Koumoutsi, Suzanne M Noble, Kit Pogliano, Carlos A Guerrero, Pieter C Dorrestein | Journal Of Bacteriology | 2014-02-14 |
| Bacterial infections in cirrhosis: a position statement based on the EASL Special Conference 2013. | Rajiv Jalan, Javier Fernandez, Reiner Wiest, Bernd Schnabl, Richard Moreau, Paolo Angeli, Vanessa Stadlbauer, Thierry Gustot, Mauro Bernardi, Rafael Canton, Agustin Albillos, Frank Lammert, Alexander Wilmer, Rajeshwar Mookerjee, Jordi Vila, Rita Garcia-Martinez, Julia Wendon, José Such, Juan Cordoba, Arun Sanyal, Guadalupe Garcia-Tsao, Vicente Arroyo, Andrew Burroughs, Pere Ginès | Journal Of Hepatology | 2014-02-12 |
| Brain angiogenesis inhibitor 1 is expressed by gastric phagocytes during infection with Helicobacter pylori and mediates the recognition and engulfment of human apoptotic gastric epithelial cells. | Soumita Das, Arup Sarkar, Kieran A Ryan, Sarah Fox, Alice H Berger, Ignacio J Juncadella, Diane Bimczok, Lesley E Smythies, Paul R Harris, Kodi S Ravichandran, Sheila E Crowe, Phillip D Smith, Peter B Ernst | FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology | 2014-02-07 |
| Combinatorial approach for large-scale identification of linked peptides from tandem mass spectrometry spectra. | Jian Wang, Veronica G Anania, Jeff Knott, John Rush, Jennie R Lill, Philip E Bourne, Nuno Bandeira | Molecular & Cellular Proteomics : MCP | 2014-02-03 |
| Group B Streptococcus β-hemolysin/cytolysin breaches maternal-fetal barriers to cause preterm birth and intrauterine fetal demise in vivo. | Tara M Randis, Shari E Gelber, Thomas A Hooven, Rosanna G Abellar, Leor H Akabas, Emma L Lewis, Lindsay B Walker, Leah M Byland, Victor Nizet, Adam J Ratner | The Journal Of Infectious Diseases | 2014-01-28 |
| Characterization of cyanobacterial hydrocarbon composition and distribution of biosynthetic pathways. | R Cameron Coates, Sheila Podell, Anton Korobeynikov, Alla Lapidus, Pavel Pevzner, David H Sherman, Eric E Allen, Lena Gerwick, William H Gerwick | PloS One | 2014-01-27 |
| Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states. | Byung-Kwan Cho, Donghyuk Kim, Eric M Knight, Karsten Zengler, Bernhard O Palsson | BMC Biology | 2014-01-24 |
| Ocean warming and acidification have complex interactive effects on the dynamics of a marine fungal disease. | Gareth J Williams, Nichole N Price, Blake Ushijima, Greta S Aeby, Sean Callahan, Simon K Davy, Jamison M Gove, Maggie D Johnson, Ingrid S Knapp, Amanda Shore-Maggio, Jennifer E Smith, Patrick Videau, Thierry M Work | Proceedings. Biological Sciences | 2014-01-22 |
| Development of ultra-high-density screening tools for microbial "omics". | Gordon J Bean, Philipp A Jaeger, Sondra Bahr, Trey Ideker | PloS One | 2014-01-21 |
| Direct cloning and refactoring of a silent lipopeptide biosynthetic gene cluster yields the antibiotic taromycin A. | Kazuya Yamanaka, Kirk A Reynolds, Roland D Kersten, Katherine S Ryan, David J Gonzalez, Victor Nizet, Pieter C Dorrestein, Bradley S Moore | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2014-01-21 |
| Regional differences of leptospirosis in Sri Lanka: observations from a flood-associated outbreak in 2011. | Suneth B Agampodi, Niroshan J Dahanayaka, Anoma K Bandaranayaka, Manoj Perera, Sumudu Priyankara, Prasanna Weerawansa, Michael A Matthias, Joseph M Vinetz | PLoS Neglected Tropical Diseases | 2014-01-16 |
| Interactions between the intestinal microbiome and liver diseases. | Bernd Schnabl, David A Brenner | Gastroenterology | 2014-01-15 |
| Expanding proteome coverage with orthogonal-specificity α-lytic proteases. | Jesse G Meyer, Sangtae Kim, David A Maltby, Majid Ghassemian, Nuno Bandeira, Elizabeth A Komives | Molecular & Cellular Proteomics : MCP | 2014-01-14 |
| Absence of neurocognitive impairment in a large Chinese sample of HCV-infected injection drug users receiving methadone treatment. | Saurabh Gupta, Jennifer E Iudicello, Chuan Shi, Scott Letendre, Adam Knight, Jianhua Li, Patricia K Riggs, Donald R Franklin, Nichole Duarte, Hua Jin, J Hampton Atkinson, Xin Yu, Zunyou Wu, Igor Grant, Robert K Heaton, | Drug And Alcohol Dependence | 2014-01-13 |
| Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation. | Katrine L Whiteson, Simone Meinardi, Yan Wei Lim, Robert Schmieder, Heather Maughan, Robert Quinn, Donald R Blake, Douglas Conrad, Forest Rohwer | The ISME Journal | 2014-01-09 |
| Capsule deletion via a λ-Red knockout system perturbs biofilm formation and fimbriae expression in Klebsiella pneumoniae MGH 78578. | Tzu-Wen Huang, Irene Lam, Hwan-You Chang, Shih-Feng Tsai, Bernhard O Palsson, Pep Charusanti | BMC Research Notes | 2014-01-08 |
| Group B Streptococcus engages an inhibitory Siglec through sialic acid mimicry to blunt innate immune and inflammatory responses in vivo. | Yung-Chi Chang, Joshua Olson, Federico C Beasley, Christine Tung, Jiquan Zhang, Paul R Crocker, Ajit Varki, Victor Nizet | PLoS Pathogens | 2014-01-02 |
| Trash to treasure: production of biofuels and commodity chemicals via syngas fermenting microorganisms. | Haythem Latif, Ahmad A Zeidan, Alex T Nielsen, Karsten Zengler | Current Opinion In Biotechnology | 2013-12-28 |
| Transition metal associations with primary biological particles in sea spray aerosol generated in a wave channel. | Timothy L Guasco, Luis A Cuadra-Rodriguez, Byron E Pedler, Andrew P Ault, Douglas B Collins, Defeng Zhao, Michelle J Kim, Matthew J Ruppel, Scott C Wilson, Robert S Pomeroy, Vicki H Grassian, Farooq Azam, Timothy H Bertram, Kimberly A Prather | Environmental Science & Technology | 2013-12-27 |
| Ceftaroline restores daptomycin activity against daptomycin-nonsusceptible vancomycin-resistant Enterococcus faecium. | George Sakoulas, Warren Rose, Poochit Nonejuie, Joshua Olson, Joseph Pogliano, Romney Humphries, Victor Nizet | Antimicrobial Agents And Chemotherapy | 2013-12-23 |
| Dermatological therapy by topical application of non-pathogenic bacteria. | Teruaki Nakatsuji, Richard L Gallo | The Journal Of Investigative Dermatology | 2013-12-20 |
| A UV-induced genetic network links the RSC complex to nucleotide excision repair and shows dose-dependent rewiring. | Rohith Srivas, Thomas Costelloe, Anne-Ruxandra Carvunis, Sovan Sarkar, Erik Malta, Su Ming Sun, Marijke Pool, Katherine Licon, Tibor van Welsem, Fred van Leeuwen, Peter J McHugh, Haico van Attikum, Trey Ideker | Cell Reports | 2013-12-19 |
| Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community. | Sheila Podell, Joanne B Emerson, Claudia M Jones, Juan A Ugalde, Sue Welch, Karla B Heidelberg, Jillian F Banfield, Eric E Allen | The ISME Journal | 2013-12-12 |
| Nafcillin enhances innate immune-mediated killing of methicillin-resistant Staphylococcus aureus. | George Sakoulas, Cheryl Y Okumura, Wdee Thienphrapa, Joshua Olson, Poochit Nonejuie, Quang Dam, Abhay Dhand, Joseph Pogliano, Michael R Yeaman, Mary E Hensler, Arnold S Bayer, Victor Nizet | Journal Of Molecular Medicine (Berlin, Germany) | 2013-12-03 |
| Quantitative molecular networking to profile marine cyanobacterial metabolomes. | Jacob R Winnikoff, Evgenia Glukhov, Jeramie Watrous, Pieter C Dorrestein, William H Gerwick | The Journal Of Antibiotics | 2013-11-27 |
| Real-world impact of neurocognitive deficits in acute and early HIV infection. | Katie L Doyle, Erin E Morgan, Sheldon Morris, Davey M Smith, Susan Little, Jennifer E Iudicello, Kaitlin Blackstone, David J Moore, Igor Grant, Scott L Letendre, Steven Paul Woods, | Journal Of Neurovirology | 2013-11-26 |
| Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii. | Harish Nagarajan, Merve Sahin, Juan Nogales, Haythem Latif, Derek R Lovley, Ali Ebrahim, Karsten Zengler | Microbial Cell Factories | 2013-11-25 |
| Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments. | Jonathan M Monk, Pep Charusanti, Ramy K Aziz, Joshua A Lerman, Ned Premyodhin, Jeffrey D Orth, Adam M Feist, Bernhard Ø Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2013-11-25 |
| Incidence and prevalence of intrasubtype HIV-1 dual infection in at-risk men in the United States. | Gabriel A Wagner, Mary E Pacold, Sergei L Kosakovsky Pond, Gemma Caballero, Antoine Chaillon, Abby E Rudolph, Sheldon R Morris, Susan J Little, Douglas D Richman, Davey M Smith | The Journal Of Infectious Diseases | 2013-11-22 |
| Influenza A penetrates host mucus by cleaving sialic acids with neuraminidase. | Miriam Cohen, Xing-Quan Zhang, Hooman P Senaati, Hui-Wen Chen, Nissi M Varki, Robert T Schooley, Pascal Gagneux | Virology Journal | 2013-11-22 |
| Staphylococcus epidermidis in the human skin microbiome mediates fermentation to inhibit the growth of Propionibacterium acnes: implications of probiotics in acne vulgaris. | Yanhan Wang, Sherwin Kuo, Muya Shu, Jinghua Yu, Stephen Huang, Ashley Dai, Aimee Two, Richard L Gallo, Chun-Ming Huang | Applied Microbiology And Biotechnology | 2013-11-22 |
| Flavin-linked oxidase catalyzes pyrrolizine formation of dichloropyrrole-containing polyketide extender unit in chlorizidine A. | Simone M Mantovani, Bradley S Moore | Journal Of The American Chemical Society | 2013-11-21 |
| Functions of the skin microbiota in health and disease. | James A Sanford, Richard L Gallo | Seminars In Immunology | 2013-11-20 |
| A model-driven quantitative metabolomics analysis of aerobic and anaerobic metabolism in E. coli K-12 MG1655 that is biochemically and thermodynamically consistent. | Douglas McCloskey, Jon A Gangoiti, Zachary A King, Robert K Naviaux, Bruce A Barshop, Bernhard O Palsson, Adam M Feist | Biotechnology And Bioengineering | 2013-11-19 |
| "Frontal systems" behaviors in comorbid human immunodeficiency virus infection and methamphetamine dependency. | María J Marquine, Jennifer E Iudicello, Erin E Morgan, Gregory G Brown, Scott L Letendre, Ronald J Ellis, Reena Deutsch, Steven Paul Woods, Igor Grant, Robert K Heaton, | Psychiatry Research | 2013-11-13 |
| Structure and function of the human skin microbiome. | Nina N Schommer, Richard L Gallo | Trends In Microbiology | 2013-11-12 |
| Genetic basis for the biosynthesis of the pharmaceutically important class of epoxyketone proteasome inhibitors. | Michelle Schorn, Judith Zettler, Joseph P Noel, Pieter C Dorrestein, Bradley S Moore, Leonard Kaysser | ACS Chemical Biology | 2013-11-08 |
| Glycogenomics as a mass spectrometry-guided genome-mining method for microbial glycosylated molecules. | Roland D Kersten, Nadine Ziemert, David J Gonzalez, Brendan M Duggan, Victor Nizet, Pieter C Dorrestein, Bradley S Moore | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2013-11-04 |
| Which antibiotic for resistant Gram-positives, and why? | John S Bradley | The Journal Of Infection | 2013-11-01 |
| Antibody response to Achromobacter xylosoxidans during HIV infection is associated with lower CD4 levels and increased lymphocyte activation. | Erick T Tatro, Intan Purnajo, Douglas D Richman, Davey M Smith, Sara Gianella | Clinical And Vaccine Immunology : CVI | 2013-10-30 |
| Flavin-mediated dual oxidation controls an enzymatic Favorskii-type rearrangement. | Robin Teufel, Akimasa Miyanaga, Quentin Michaudel, Frederick Stull, Gordon Louie, Joseph P Noel, Phil S Baran, Bruce Palfey, Bradley S Moore | Nature | 2013-10-27 |
| Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community. | Mallory Embree, Harish Nagarajan, Narjes Movahedi, Hamidreza Chitsaz, Karsten Zengler | The ISME Journal | 2013-10-24 |
| Actinoranone, a cytotoxic meroterpenoid of unprecedented structure from a marine adapted Streptomyces sp. | Sang-Jip Nam, Christopher A Kauffman, Lauren A Paul, Paul R Jensen, William Fenical | Organic Letters | 2013-10-23 |
| MS/MS-based networking and peptidogenomics guided genome mining revealed the stenothricin gene cluster in Streptomyces roseosporus. | Wei-Ting Liu, Anne Lamsa, Weng Ruh Wong, Paul D Boudreau, Roland Kersten, Yao Peng, Wilna J Moree, Brendan M Duggan, Bradley S Moore, William H Gerwick, Roger G Linington, Kit Pogliano, Pieter C Dorrestein | The Journal Of Antibiotics | 2013-10-23 |
| Streptococcus pneumoniae invades erythrocytes and utilizes them to evade human innate immunity. | Masaya Yamaguchi, Yutaka Terao, Yuka Mori-Yamaguchi, Hisanori Domon, Yuuki Sakaue, Tetsuya Yagi, Kunihiko Nishino, Akihito Yamaguchi, Victor Nizet, Shigetada Kawabata | PloS One | 2013-10-23 |
| Genetic attributes of blood-derived subtype-C HIV-1 tat and env in India and neurocognitive function. | Myres W Tilghman, Jayanta Bhattacharya, Suprit Deshpande, Manisha Ghate, Stephen Espitia, Igor Grant, Thomas D Marcotte, Davey Smith, Sanjay Mehendale | Journal Of Medical Virology | 2013-10-22 |
| Metabolic profiling directly from the Petri dish using nanospray desorption electrospray ionization imaging mass spectrometry. | Jeramie Watrous, Patrick Roach, Brandi Heath, Theodore Alexandrov, Julia Laskin, Pieter C Dorrestein | Analytical Chemistry | 2013-10-14 |
| Brucella melitensis T cell epitope recognition in humans with brucellosis in Peru. | Anthony P Cannella, Cecilia S Lindestam Arlehamn, John Sidney, Kailash P Patra, Katherine Torres, Renee M Tsolis, Li Liang, Philip L Felgner, Mayuko Saito, Eduardo Gotuzzo, Robert H Gilman, Alessandro Sette, Joseph M Vinetz | Infection And Immunity | 2013-10-14 |
| Novel psychropiezophilic Oceanospirillales species Profundimonas piezophila gen. nov., sp. nov., isolated from the deep-sea environment of the Puerto Rico trench. | Yi Cao, Roger A Chastain, Emiley A Eloe, Yuichi Nogi, Chiaki Kato, Douglas H Bartlett | Applied And Environmental Microbiology | 2013-10-11 |
| Antibacterial mechanisms identified through structural systems pharmacology. | Roger L Chang, Lei Xie, Philip E Bourne, Bernhard O Palsson | BMC Systems Biology | 2013-10-10 |
| Challenges and triumphs to genomics-based natural product discovery. | Paul R Jensen, Krystle L Chavarria, William Fenical, Bradley S Moore, Nadine Ziemert | Journal Of Industrial Microbiology & Biotechnology | 2013-10-09 |
| Novel codon insert in HIV type 1 clade B reverse transcriptase associated with low-level viremia during antiretroviral therapy. | Antoine Chaillon, Sara Gianella, Homero Vazquez, Caroline Ignacio, Adam C Zweig, Douglas D Richman, Davey M Smith | AIDS Research And Human Retroviruses | 2013-10-05 |
| Pathogenomic inference of virulence-associated genes in Leptospira interrogans. | Jason S Lehmann, Derrick E Fouts, Daniel H Haft, Anthony P Cannella, Jessica N Ricaldi, Lauren Brinkac, Derek Harkins, Scott Durkin, Ravi Sanka, Granger Sutton, Angelo Moreno, Joseph M Vinetz, Michael A Matthias | PLoS Neglected Tropical Diseases | 2013-10-03 |
| Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction. | Edward J O'Brien, Joshua A Lerman, Roger L Chang, Daniel R Hyduke, Bernhard Ø Palsson | Molecular Systems Biology | 2013-10-01 |
| Composite bacterial hopanoids and their microbial producers across oxygen gradients in the water column of the California Current. | Jenan J Kharbush, Juan A Ugalde, Shane L Hogle, Eric E Allen, Lihini I Aluwihare | Applied And Environmental Microbiology | 2013-09-27 |
| Global metabolic network reorganization by adaptive mutations allows fast growth of Escherichia coli on glycerol. | Kian-Kai Cheng, Baek-Seok Lee, Takeshi Masuda, Takuro Ito, Kazutaka Ikeda, Akiyoshi Hirayama, Lingli Deng, Jiyang Dong, Kazuyuki Shimizu, Tomoyoshi Soga, Masaru Tomita, Bernhard O Palsson, Martin Robert | Nature Communications | 2013-09-27 |
| Human milk oligosaccharides protect against enteropathogenic Escherichia coli attachment in vitro and EPEC colonization in suckling mice. | Carolin F Manthey, Chloe A Autran, Lars Eckmann, Lars Bode | Journal Of Pediatric Gastroenterology And Nutrition | 2013-09-20 |
| Dynamics of viral evolution and neutralizing antibody response after HIV-1 superinfection. | Antoine Chaillon, Gabriel A Wagner, N Lance Hepler, Susan J Little, Sergei L Kosakovsky Pond, Gemma Caballero, Mary E Pacold, Pham Phung, Terri Wrin, Douglas D Richman, Joel O Wertheim, Davey M Smith | Journal Of Virology | 2013-09-18 |
| Bacterial cytological profiling rapidly identifies the cellular pathways targeted by antibacterial molecules. | Poochit Nonejuie, Michael Burkart, Kit Pogliano, Joe Pogliano | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2013-09-17 |
| Fluid and electrolyte secretion in the inflamed gut: novel targets for treatment of inflammation-induced diarrhea. | Mélanie G Gareau, Kim E Barrett | Current Opinion In Pharmacology | 2013-09-17 |
| Active output state of the Synechococcus Kai circadian oscillator. | Mark L Paddock, Joseph S Boyd, Dawn M Adin, Susan S Golden | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2013-09-16 |
| Hepatocyte nuclear factors 4α and 1α regulate kidney developmental expression of drug-metabolizing enzymes and drug transporters. | Gleb Martovetsky, James B Tee, Sanjay K Nigam | Molecular Pharmacology | 2013-09-13 |
| Human circulating PD-1+CXCR3-CXCR5+ memory Tfh cells are highly functional and correlate with broadly neutralizing HIV antibody responses. | Michela Locci, Colin Havenar-Daughton, Elise Landais, Jennifer Wu, Mark A Kroenke, Cecilia L Arlehamn, Laura F Su, Rafael Cubas, Mark M Davis, Alessandro Sette, Elias K Haddad, , Pascal Poignard, Shane Crotty | Immunity | 2013-09-12 |
| Molecular networking as a dereplication strategy. | Jane Y Yang, Laura M Sanchez, Christopher M Rath, Xueting Liu, Paul D Boudreau, Nicole Bruns, Evgenia Glukhov, Anne Wodtke, Rafael de Felicio, Amanda Fenner, Weng Ruh Wong, Roger G Linington, Lixin Zhang, Hosana M Debonsi, William H Gerwick, Pieter C Dorrestein | Journal Of Natural Products | 2013-09-11 |
| Ex vivo innate immune cytokine signature of enhanced risk of relapsing brucellosis. | Kristyn E Feldman, Paul M Loriaux, Mayuko Saito, Iskra Tuero, Homarh Villaverde, Tenaya Siva, Eduardo Gotuzzo, Robert H Gilman, Alexander Hoffmann, Joseph M Vinetz | PLoS Neglected Tropical Diseases | 2013-09-05 |
| Altered expression and localization of ion transporters contribute to diarrhea in mice with Salmonella-induced enteritis. | Ronald R Marchelletta, Melanie G Gareau, Declan F McCole, Sharon Okamoto, Elise Roel, Rachel Klinkenberg, Donald G Guiney, Joshua Fierer, Kim E Barrett | Gastroenterology | 2013-08-31 |
| Phylogenetic and chemical diversity of a hybrid-isoprenoid-producing streptomycete lineage. | Kelley A Gallagher, Kristin Rauscher, Laura Pavan Ioca, Paul R Jensen | Applied And Environmental Microbiology | 2013-08-30 |
| Farnesides A and B, sesquiterpenoid nucleoside ethers from a marine-derived Streptomyces sp., strain CNT-372 from Fiji. | Ella Zafrir Ilan, Manuel R Torres, Jacques Prudhomme, Karine Le Roch, Paul R Jensen, William Fenical | Journal Of Natural Products | 2013-08-29 |
| Microbial life in a fjord: metagenomic analysis of a microbial mat in Chilean patagonia. | Juan A Ugalde, Maria J Gallardo, Camila Belmar, Práxedes Muñoz, Nathaly Ruiz-Tagle, Sandra Ferrada-Fuentes, Carola Espinoza, Eric E Allen, Victor A Gallardo | PloS One | 2013-08-28 |
| Functionalized ultrasound-propelled magnetically guided nanomotors: toward practical biomedical applications. | Victor Garcia-Gradilla, Jahir Orozco, Sirilak Sattayasamitsathit, Fernando Soto, Filiz Kuralay, Ashley Pourazary, Adlai Katzenberg, Wei Gao, Yufeng Shen, Joseph Wang | ACS Nano | 2013-08-28 |
| GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data. | Brian J Schmidt, Ali Ebrahim, Thomas O Metz, Joshua N Adkins, Bernhard Ø Palsson, Daniel R Hyduke | Bioinformatics (Oxford, England) | 2013-08-23 |
| Virologic correlates of anti-CMV IgG levels in HIV-1-infected men. | Sara Gianella, Sheldon R Morris, Erick Tatro, Milenka V Vargas, Richard H Haubrich, Eric S Daar, Michael P Dube, Douglas D Richman, Susan J Little, Davey M Smith | The Journal Of Infectious Diseases | 2013-08-20 |
| Tissue-specific HIV-1 infection: why it matters. | Maile Ay Karris, Davey M Smith | Future Virology | 2013-08-16 |
| The SpoIIQ landmark protein has different requirements for septal localization and immobilization. | Jennifer Fredlund, Dan Broder, Tinya Fleming, Clémence Claussin, Kit Pogliano | Molecular Microbiology | 2013-08-14 |
| Functionally essential interaction between Yersinia YscO and the T3S4 domain of YscP. | Romila Mukerjea, Partho Ghosh | Journal Of Bacteriology | 2013-08-09 |
| Measuring competitive fitness in dynamic environments. | Ivan A Razinkov, Bridget L Baumgartner, Matthew R Bennett, Lev S Tsimring, Jeff Hasty | The Journal Of Physical Chemistry. B | 2013-08-07 |
| Multispecific drug transporter Slc22a8 (Oat3) regulates multiple metabolic and signaling pathways. | Wei Wu, Neema Jamshidi, Satish A Eraly, Henry C Liu, Kevin T Bush, Bernhard O Palsson, Sanjay K Nigam | Drug Metabolism And Disposition: The Biological Fate Of Chemicals | 2013-08-06 |
| An allele of the crm gene blocks cyanobacterial circadian rhythms. | Joseph S Boyd, Juliana R Bordowitz, Anna C Bree, Susan S Golden | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2013-08-05 |
| Human milk galectin-3 binding protein and breast-feeding-associated HIV transmission. | Christina S Chan, Hae-Young Kim, Chloe Autran, Jae H Kim, Moses Sinkala, Chipepo Kankasa, Mwiya Mwiya, Donald M Thea, Grace M Aldrovandi, Louise Kuhn, Lars Bode | The Pediatric Infectious Disease Journal | 2013-08-01 |
| IgG protease Mac/IdeS is not essential for phagocyte resistance or mouse virulence of M1T1 group A Streptococcus. | Cheryl Y M Okumura, Ericka L Anderson, Simon Döhrmann, Dan N Tran, Joshua Olson, Ulrich von Pawel-Rammingen, Victor Nizet | MBio | 2013-07-30 |
| Multilocus sequence typing reveals evidence of homologous recombination linked to antibiotic resistance in the genus Salinispora. | Kelle C Freel, Natalie Millán-Aguiñaga, Paul R Jensen | Applied And Environmental Microbiology | 2013-07-26 |
| A 3-dimensional trimeric β-barrel model for Chlamydia MOMP contains conserved and novel elements of Gram-negative bacterial porins. | Victoria A Feher, Arlo Randall, Pierre Baldi, Robin M Bush, Luis M de la Maza, Rommie E Amaro | PloS One | 2013-07-25 |
| The Hospital Microbiome Project: Meeting report for the 2nd Hospital Microbiome Project, Chicago, USA, January 15(th), 2013. | Benjamin D Shogan, Daniel P Smith, Aaron I Packman, Scott T Kelley, Emily M Landon, Seema Bhangar, Gary J Vora, Rachael M Jones, Kevin Keegan, Brent Stephens, Tiffanie Ramos, Benjamin C Kirkup, Hal Levin, Mariana Rosenthal, Betsy Foxman, Eugene B Chang, Jeffrey Siegel, Sarah Cobey, Gary An, John C Alverdy, Paula J Olsiewski, Mark O Martin, Rachel Marrs, Mark Hernandez, Scott Christley, Michael Morowitz, Stephen Weber, Jack Gilbert | Standards In Genomic Sciences | 2013-07-25 |
| Imaging mass spectrometry of a coral microbe interaction with fungi. | Wilna J Moree, Jane Y Yang, Xiling Zhao, Wei-Ting Liu, Marystella Aparicio, Librada Atencio, Javier Ballesteros, Joel Sánchez, Ronnie G Gavilán, Marcelino Gutiérrez, Pieter C Dorrestein | Journal Of Chemical Ecology | 2013-07-24 |
| Influence of coral and algal exudates on microbially mediated reef metabolism. | Andreas F Haas, Craig E Nelson, Forest Rohwer, Linda Wegley-Kelly, Steven D Quistad, Craig A Carlson, James J Leichter, Mark Hatay, Jennifer E Smith | PeerJ | 2013-07-16 |
| Antagonistic interactions mediated by marine bacteria: the role of small molecules. | Matthias Wietz, Katherine Duncan, Nastassia V Patin, Paul R Jensen | Journal Of Chemical Ecology | 2013-07-14 |
| In defense of skin: antimicrobial peptides have their day. Interview by Hannah Branch. | Richard L Gallo | Future Microbiology | 2013-07-12 |
| Inhibition of miR-146a prevents enterovirus-induced death by restoring the production of type I interferon. | Bing-Ching Ho, I-Shing Yu, Li-Fan Lu, Alexander Rudensky, Hsuan-Yu Chen, Chang-Wu Tsai, Yih-Leong Chang, Chen-Tu Wu, Luan-Yin Chang, Shin-Ru Shih, Shu-Wha Lin, Chun-Nan Lee, Pan-Chyr Yang, Sung-Liang Yu | Nature Communications | 2013-07-11 |
| The globally disseminated M1T1 clone of group A Streptococcus evades autophagy for intracellular replication. | Timothy C Barnett, David Liebl, Lisa M Seymour, Christine M Gillen, Jin Yan Lim, Christopher N Larock, Mark R Davies, Benjamin L Schulz, Victor Nizet, Rohan D Teasdale, Mark J Walker | Cell Host & Microbe | 2013-07-09 |
| Role of a microcin-C-like biosynthetic gene cluster in allelopathic interactions in marine Synechococcus. | Javier Paz-Yepes, Bianca Brahamsha, Brian Palenik | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2013-07-01 |
| HIV-1 clade B pol evolution following primary infection. | George K Hightower, Susanne J May, Josué Pérez-Santiago, Mary E Pacold, Gabriel A Wagner, Susan J Little, Douglas D Richman, Sanjay R Mehta, Davey M Smith, Sergei L Kosakovsky Pond | PloS One | 2013-06-28 |
| Checkpoint kinases regulate a global network of transcription factors in response to DNA damage. | Eric J Jaehnig, Dwight Kuo, Hans Hombauer, Trey G Ideker, Richard D Kolodner | Cell Reports | 2013-06-27 |
| MS/MS networking guided analysis of molecule and gene cluster families. | Don Duy Nguyen, Cheng-Hsuan Wu, Wilna J Moree, Anne Lamsa, Marnix H Medema, Xiling Zhao, Ronnie G Gavilan, Marystella Aparicio, Librada Atencio, Chanaye Jackson, Javier Ballesteros, Joel Sanchez, Jeramie D Watrous, Vanessa V Phelan, Corine van de Wiel, Roland D Kersten, Samina Mehnaz, René De Mot, Elizabeth A Shank, Pep Charusanti, Harish Nagarajan, Brendan M Duggan, Bradley S Moore, Nuno Bandeira, Bernhard Ø Palsson, Kit Pogliano, Marcelino Gutiérrez, Pieter C Dorrestein | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2013-06-24 |
| The birth of innate immunity. | Richard L Gallo | Experimental Dermatology | 2013-06-18 |
| Anthracimycin, a potent anthrax antibiotic from a marine-derived actinomycete. | Kyoung Hwa Jang, Sang-Jip Nam, Jeffrey B Locke, Christopher A Kauffman, Deanna S Beatty, Lauren A Paul, William Fenical | Angewandte Chemie (International Ed. In English) | 2013-06-17 |
| Structural systems biology evaluation of metabolic thermotolerance in Escherichia coli. | Roger L Chang, Kathleen Andrews, Donghyuk Kim, Zhanwen Li, Adam Godzik, Bernhard O Palsson | Science (New York, N.Y.) | 2013-06-08 |
| Sequencing-grade de novo analysis of MS/MS triplets (CID/HCD/ETD) from overlapping peptides. | Adrian Guthals, Karl R Clauser, Ari M Frank, Nuno Bandeira | Journal Of Proteome Research | 2013-05-30 |
| Deficiency of intestinal mucin-2 ameliorates experimental alcoholic liver disease in mice. | Phillipp Hartmann, Peng Chen, Hui J Wang, Lirui Wang, Declan F McCole, Katharina Brandl, Peter Stärkel, Clara Belzer, Claus Hellerbrand, Hidekazu Tsukamoto, Samuel B Ho, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2013-05-27 |
| Treatment of high-level gentamicin-resistant Enterococcus faecalis endocarditis with daptomycin plus ceftaroline. | George Sakoulas, Poochit Nonejuie, Victor Nizet, Joseph Pogliano, Nancy Crum-Cianflone, Fadi Haddad | Antimicrobial Agents And Chemotherapy | 2013-05-20 |
| Advances in microalgae engineering and synthetic biology applications for biofuel production. | Javier A Gimpel, Elizabeth A Specht, D Ryan Georgianna, Stephen P Mayfield | Current Opinion In Chemical Biology | 2013-05-16 |
| Common flora and intestine: A carcinogenic marriage. | Kepeng Wang, Michael Karin | Cellular Logistics | 2013-05-15 |
| Caenorhabditis elegans as a model for intracellular pathogen infection. | Keir M Balla, Emily R Troemel | Cellular Microbiology | 2013-05-13 |
| Synergistic effects of family history of hepatocellular carcinoma and hepatitis B virus infection on risk for incident hepatocellular carcinoma. | Rohit Loomba, Jessica Liu, Hwai-I Yang, Mei-Hsuan Lee, Sheng-Nan Lu, Li-Yu Wang, Uchenna H Iloeje, San-Lin You, David Brenner, Chien-Jen Chen, | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2013-05-10 |
| A tandem chemoenzymatic methylation by S-adenosyl-L-methionine. | Joseph M Lipson, Marie Thomsen, Bradley S Moore, Rasmus P Clausen, James J La Clair, Michael D Burkart | Chembiochem : A European Journal Of Chemical Biology | 2013-05-06 |
| Bioactivity-guided genome mining reveals the lomaiviticin biosynthetic gene cluster in Salinispora tropica. | Roland D Kersten, Amy L Lane, Markus Nett, Taylor K S Richter, Brendan M Duggan, Pieter C Dorrestein, Bradley S Moore | Chembiochem : A European Journal Of Chemical Biology | 2013-05-03 |
| The genome organization of Thermotoga maritima reflects its lifestyle. | Haythem Latif, Joshua A Lerman, Vasiliy A Portnoy, Yekaterina Tarasova, Harish Nagarajan, Alexandra C Schrimpe-Rutledge, Richard D Smith, Joshua N Adkins, Dae-Hee Lee, Yu Qiu, Karsten Zengler | PLoS Genetics | 2013-04-25 |
| Bringing the ocean into the laboratory to probe the chemical complexity of sea spray aerosol. | Kimberly A Prather, Timothy H Bertram, Vicki H Grassian, Grant B Deane, M Dale Stokes, Paul J Demott, Lihini I Aluwihare, Brian P Palenik, Farooq Azam, John H Seinfeld, Ryan C Moffet, Mario J Molina, Christopher D Cappa, Franz M Geiger, Gregory C Roberts, Lynn M Russell, Andrew P Ault, Jonas Baltrusaitis, Douglas B Collins, Craig E Corrigan, Luis A Cuadra-Rodriguez, Carlena J Ebben, Sara D Forestieri, Timothy L Guasco, Scott P Hersey, Michelle J Kim, William F Lambert, Robin L Modini, Wilton Mui, Byron E Pedler, Matthew J Ruppel, Olivia S Ryder, Nathan G Schoepp, Ryan C Sullivan, Defeng Zhao | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2013-04-25 |
| Assembly-driven community genomics of a hypersaline microbial ecosystem. | Sheila Podell, Juan A Ugalde, Priya Narasingarao, Jillian F Banfield, Karla B Heidelberg, Eric E Allen | PloS One | 2013-04-18 |
| Using ultradeep pyrosequencing to study HIV-1 coreceptor usage in primary and dual infection. | Gabriel A Wagner, Mary E Pacold, Edgar Vigil, Gemma Caballero, Sheldon R Morris, Sergei L Kosakovsky Pond, Susan J Little, Douglas D Richman, Sara Gianella, Davey M Smith | The Journal Of Infectious Diseases | 2013-04-18 |
| Association between living environment and human oral viral ecology. | Refugio Robles-Sikisaka, Melissa Ly, Tobias Boehm, Mayuri Naidu, Julia Salzman, David T Pride | The ISME Journal | 2013-04-18 |
| Shedding of HIV and human herpesviruses in the semen of effectively treated HIV-1-infected men who have sex with men. | Sara Gianella, Davey M Smith, Milenka V Vargas, Susan J Little, Douglas D Richman, Eric S Daar, Michael P Dube, Fan Zhang, Christina C Ginocchio, Richard H Haubrich, Sheldon R Morris, | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2013-04-17 |
| Data-independent microbial metabolomics with ambient ionization mass spectrometry. | Christopher M Rath, Jane Y Yang, Theodore Alexandrov, Pieter C Dorrestein | Journal Of The American Society For Mass Spectrometry | 2013-04-09 |
| Expanding the spectral palette of fluorescent proteins for the green microalga Chlamydomonas reinhardtii. | Beth A Rasala, Daniel J Barrera, Jenny Ng, Thomas M Plucinak, Julian N Rosenberg, Donald P Weeks, George A Oyler, Todd C Peterson, Farzad Haerizadeh, Stephen P Mayfield | The Plant Journal : For Cell And Molecular Biology | 2013-04-08 |
| Association of rhizobia with a marine polychaete. | Mindi M Summers, Sigrid Katz, Eric E Allen, Greg W Rouse | Environmental Microbiology Reports | 2013-03-18 |
| Linking intestinal homeostasis and liver disease. | Bernd Schnabl | Current Opinion In Gastroenterology | 2013-03-16 |
| Reconciling a Salmonella enterica metabolic model with experimental data confirms that overexpression of the glyoxylate shunt can rescue a lethal ppc deletion mutant. | Nicole L Fong, Joshua A Lerman, Irene Lam, Bernhard O Palsson, Pep Charusanti | FEMS Microbiology Letters | 2013-03-15 |
| Canine and feline parvoviruses preferentially recognize the non-human cell surface sialic acid N-glycolylneuraminic acid. | Jonas Löfling, Sangbom Michael Lyi, Colin R Parrish, Ajit Varki | Virology | 2013-03-14 |
| Targeted search for actinomycetes from nearshore and deep-sea marine sediments. | Alejandra Prieto-Davó, Luis J Villarreal-Gómez, Stephanie Forschner-Dancause, Alan T Bull, James E M Stach, David C Smith, Dave C Rowley, Paul R Jensen | FEMS Microbiology Ecology | 2013-03-11 |
| A new approach to evaluating statistical significance of spectral identifications. | Hosein Mohimani, Sangtae Kim, Pavel A Pevzner | Journal Of Proteome Research | 2013-03-08 |
| Structures and comparative characterization of biosynthetic gene clusters for cyanosporasides, enediyne-derived natural products from marine actinomycetes. | Amy L Lane, Sang-Jip Nam, Takashi Fukuda, Kazuya Yamanaka, Christopher A Kauffman, Paul R Jensen, William Fenical, Bradley S Moore | Journal Of The American Chemical Society | 2013-03-07 |
| Dust and biological aerosols from the Sahara and Asia influence precipitation in the western U.S. | Jessie M Creamean, Kaitlyn J Suski, Daniel Rosenfeld, Alberto Cazorla, Paul J DeMott, Ryan C Sullivan, Allen B White, F Martin Ralph, Patrick Minnis, Jennifer M Comstock, Jason M Tomlinson, Kimberly A Prather | Science (New York, N.Y.) | 2013-02-28 |
| A rare cause of an ileocecal fistula in an AIDS patient. Gastrointestinal infection by Histoplasma capsulatum infection identified with internal transcribed spacer primer sets. | Amir Zarrinpar, Grace Y Lin, Joseph T Lonergan | Gastroenterology | 2013-02-26 |
| Chlorizidine, a cytotoxic 5H-pyrrolo[2,1-a]isoindol-5-one-containing alkaloid from a marine Streptomyces sp. | Xavier Alvarez-Mico, Paul R Jensen, William Fenical, Chambers C Hughes | Organic Letters | 2013-02-13 |
| Fermentation of Propionibacterium acnes, a commensal bacterium in the human skin microbiome, as skin probiotics against methicillin-resistant Staphylococcus aureus. | Muya Shu, Yanhan Wang, Jinghua Yu, Sherwin Kuo, Alvin Coda, Yong Jiang, Richard L Gallo, Chun-Ming Huang | PloS One | 2013-02-06 |
| CYP261 enzymes from deep sea bacteria: a clue to conformational heterogeneity in cytochromes P450. | Dmitri R Davydov, Elena V Sineva, Nadezhda Y Davydova, Douglas H Bartlett, James R Halpert | Biotechnology And Applied Biochemistry | 2013-01-25 |
| Genomic island genes in a coastal marine Synechococcus strain confer enhanced tolerance to copper and oxidative stress. | Rhona K Stuart, Bianca Brahamsha, Kayla Busby, Brian Palenik | The ISME Journal | 2013-01-24 |
| Synergism between obesity and alcohol in increasing the risk of hepatocellular carcinoma: a prospective cohort study. | Rohit Loomba, Hwai-I Yang, Jun Su, David Brenner, Elizabeth Barrett-Connor, Uchenna Iloeje, Chien-Jen Chen | American Journal Of Epidemiology | 2013-01-24 |
| Innate immune defense system of the skin. | Maryam Afshar, Richard L Gallo | Veterinary Dermatology | 2013-01-22 |
| Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association. | Harish Nagarajan, Mallory Embree, Amelia-Elena Rotaru, Pravin M Shrestha, Adam M Feist, Bernhard Ø Palsson, Derek R Lovley, Karsten Zengler | Nature Communications | 2013-01-18 |
| Methicillin-resistant Staphylococcus aureus bacterial nitric-oxide synthase affects antibiotic sensitivity and skin abscess development. | Nina M van Sorge, Federico C Beasley, Ivan Gusarov, David J Gonzalez, Maren von Köckritz-Blickwede, Sabina Anik, Andrew W Borkowski, Pieter C Dorrestein, Evgeny Nudler, Victor Nizet | The Journal Of Biological Chemistry | 2013-01-15 |
| Biosynthetic multitasking facilitates thalassospiramide structural diversity in marine bacteria. | Avena C Ross, Ying Xu, Liang Lu, Roland D Kersten, Zongze Shao, Abdulaziz M Al-Suwailem, Pieter C Dorrestein, Pei-Yuan Qian, Bradley S Moore | Journal Of The American Chemical Society | 2013-01-11 |
| Decoupling epigenetic and genetic effects through systematic analysis of gene position. | Menzies Chen, Katherine Licon, Rei Otsuka, Lorraine Pillus, Trey Ideker | Cell Reports | 2013-01-03 |
| Microbial metabolic exchange in 3D. | Jeramie D Watrous, Vanessa V Phelan, Cheng-Chih Hsu, Wilna J Moree, Brendan M Duggan, Theodore Alexandrov, Pieter C Dorrestein | The ISME Journal | 2013-01-03 |
| Cytomegalovirus DNA in semen and blood is associated with higher levels of proviral HIV DNA. | Sara Gianella, Christy M Anderson, Milenka V Vargas, Douglas D Richman, Susan J Little, Sheldon R Morris, Davey M Smith | The Journal Of Infectious Diseases | 2012-12-28 |
| Structure of the essential diversity-generating retroelement protein bAvd and its functionally important interaction with reverse transcriptase. | Maher Alayyoubi, Huatao Guo, Sanghamitra Dey, Talin Golnazarian, Garrett A Brooks, Andrew Rong, Jeffery F Miller, Partho Ghosh | Structure (London, England : 1993) | 2012-12-27 |
| Sulfide-driven microbial electrosynthesis. | Yanming Gong, Ali Ebrahim, Adam M Feist, Mallory Embree, Tian Zhang, Derek Lovley, Karsten Zengler | Environmental Science & Technology | 2012-12-19 |
| Identification of liver cancer progenitors whose malignant progression depends on autocrine IL-6 signaling. | Guobin He, Debanjan Dhar, Hayato Nakagawa, Joan Font-Burgada, Hisanobu Ogata, Yuhong Jiang, Shabnam Shalapour, Ekihiro Seki, Shawn E Yost, Kristen Jepsen, Kelly A Frazer, Olivier Harismendy, Maria Hatziapostolou, Dimitrios Iliopoulos, Atsushi Suetsugu, Robert M Hoffman, Ryosuke Tateishi, Kazuhiko Koike, Michael Karin | Cell | 2012-12-11 |
| Multiple-omic data analysis of Klebsiella pneumoniae MGH 78578 reveals its transcriptional architecture and regulatory features. | Joo-Hyun Seo, Jay Sung-Joong Hong, Donghyuk Kim, Byung-Kwan Cho, Tzu-Wen Huang, Shih-Feng Tsai, Bernhard O Palsson, Pep Charusanti | BMC Genomics | 2012-11-29 |
| Parallel rapid HIV testing in pregnant women at Tijuana General Hospital, Baja California, Mexico. | Rolando M Viani, Maria Rosario G Araneta, Stephen A Spector | AIDS Research And Human Retroviruses | 2012-11-19 |
| Role of seminal shedding of herpesviruses in HIV Type 1 Transmission. | Sara Gianella, Sheldon R Morris, Milenka V Vargas, Jason A Young, Bryan Callahan, Douglas D Richman, Susan J Little, Davey M Smith | The Journal Of Infectious Diseases | 2012-11-12 |
| Genetic variants in the host restriction factor APOBEC3G are associated with HIV-1-related disease progression and central nervous system impairment in children. | Kumud K Singh, Yan Wang, Kathryn P Gray, Mona Farhad, Sean Brummel, Terence Fenton, Rodney Trout, Stephen A Spector | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2012-11-10 |
| Micromotor-based lab-on-chip immunoassays. | Miguel García, Jahir Orozco, Maria Guix, Wei Gao, Sirilak Sattayasamitsathit, Alberto Escarpa, Arben Merkoçi, Joseph Wang | Nanoscale | 2012-11-06 |
| Designed biosynthesis of 36-methyl-FK506 by polyketide precursor pathway engineering. | Anna Lechner, Micheal C Wilson, Yeon Hee Ban, Jae-Yeon Hwang, Yeo Joon Yoon, Bradley S Moore | ACS Synthetic Biology | 2012-11-05 |
| Cystic fibrosis therapy: a community ecology perspective. | Douglas Conrad, Matthew Haynes, Peter Salamon, Paul B Rainey, Merry Youle, Forest Rohwer | American Journal Of Respiratory Cell And Molecular Biology | 2012-10-25 |
| The response of human skin commensal bacteria as a reflection of UV radiation: UV-B decreases porphyrin production. | Yanhan Wang, Wenhong Zhu, Muya Shu, Yong Jiang, Richard L Gallo, Yu-Tsueng Liu, Chun-Ming Huang | PloS One | 2012-10-25 |
| Phylogenetic approaches to natural product structure prediction. | Nadine Ziemert, Paul R Jensen | Methods In Enzymology | 2012-10-23 |
| Study of streptococcal hemoprotein receptor (Shr) in iron acquisition and virulence of M1T1 group A streptococcus. | Samira Dahesh, Victor Nizet, Jason N Cole | Virulence | 2012-10-17 |
| Oxidized quinones signal onset of darkness directly to the cyanobacterial circadian oscillator. | Yong-Ick Kim, David J Vinyard, Gennady M Ananyev, G Charles Dismukes, Susan S Golden | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2012-10-15 |
| Helicobacter pylori in gastric malignancies. | Abhishek Bhandari, Sheila E Crowe | Current Gastroenterology Reports | 2012-10-12 |
| The intestinal microbiome and the leaky gut as therapeutic targets in alcoholic liver disease. | Phillipp Hartmann, Wei-Chung Chen, Bernd Schnabl | Frontiers In Physiology | 2012-10-11 |
| Activity of the thiopeptide antibiotic nosiheptide against contemporary strains of methicillin-resistant Staphylococcus aureus. | Nina M Haste, Wdee Thienphrapa, Dan N Tran, Sandra Loesgen, Peng Sun, Sang-Jip Nam, Paul R Jensen, William Fenical, George Sakoulas, Victor Nizet, Mary E Hensler | The Journal Of Antibiotics | 2012-10-10 |
| Molecular analysis of model gut microbiotas by imaging mass spectrometry and nanodesorption electrospray ionization reveals dietary metabolite transformations. | Christopher M Rath, Theodore Alexandrov, Steven K Higginbottom, Jiao Song, Marcos E Milla, Michael A Fischbach, Justin L Sonnenburg, Pieter C Dorrestein | Analytical Chemistry | 2012-10-10 |
| Anaerobic utilization of toluene by marine alpha- and gammaproteobacteria reducing nitrate. | Karine Alain, Jens Harder, Friedrich Widdel, Karsten Zengler | Microbiology (Reading, England) | 2012-10-04 |
| A bacterial pathogen co-opts host plasmin to resist killing by cathelicidin antimicrobial peptides. | Andrew Hollands, David Gonzalez, Emma Leire, Cortny Donald, Richard L Gallo, Martina Sanderson-Smith, Pieter C Dorrestein, Victor Nizet | The Journal Of Biological Chemistry | 2012-10-04 |
| Sexual transmission of predicted CXCR4-tropic HIV-1 likely originating from the source partner's seminal cells. | Sara Gianella, Sanjay R Mehta, Jason A Young, Milenka V Vargas, Susan J Little, Douglas D Richman, Sergei L Kosakovsky Pond, Davey M Smith | Virology | 2012-10-03 |
| Molecular mechanisms of acquired proteasome inhibitor resistance. | Andrew J Kale, Bradley S Moore | Journal Of Medicinal Chemistry | 2012-10-03 |
| Making gene circuits sing. | Arthur Prindle, Jeff Hasty | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2012-10-01 |
| Localized cell death focuses mechanical forces during 3D patterning in a biofilm. | Munehiro Asally, Mark Kittisopikul, Pau Rué, Yingjie Du, Zhenxing Hu, Tolga Çağatay, Andra B Robinson, Hongbing Lu, Jordi Garcia-Ojalvo, Gürol M Süel | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2012-09-24 |
| Impairment of O-antigen production confers resistance to grazing in a model amoeba-cyanobacterium predator-prey system. | Ryan Simkovsky, Emy F Daniels, Karen Tang, Stacey C Huynh, Susan S Golden, Bianca Brahamsha | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2012-09-24 |
| N-terminal protein processing: a comparative proteogenomic analysis. | Stefano Bonissone, Nitin Gupta, Margaret Romine, Ralph A Bradshaw, Pavel A Pevzner | Molecular & Cellular Proteomics : MCP | 2012-09-23 |
| Impact of seminal cytomegalovirus replication on HIV-1 dynamics between blood and semen. | Sara Gianella, Sanjay R Mehta, Matthew C Strain, Jason A Young, Milenka V Vargas, Susan J Little, Douglas D Richman, Sergei L Kosakovsky Pond, Davey M Smith | Journal Of Medical Virology | 2012-09-22 |
| Using unfixed, frozen tissues to study natural mucin distribution. | Miriam Cohen, Nissi M Varki, Mark D Jankowski, Pascal Gagneux | Journal Of Visualized Experiments : JoVE | 2012-09-21 |
| Higher HIV-1 genetic diversity is associated with AIDS and neuropsychological impairment. | George K Hightower, Joseph K Wong, Scott L Letendre, Anya A Umlauf, Ronald J Ellis, Caroline C Ignacio, Robert K Heaton, Ann C Collier, Christina M Marra, David B Clifford, Benjamin B Gelman, Justin C McArthur, Susan Morgello, David M Simpson, J A McCutchan, Igor Grant, Susan J Little, Douglas D Richman, Sergei L Kosakovsky Pond, Davey M Smith, | Virology | 2012-09-20 |
| A conserved UDP-glucose dehydrogenase encoded outside the hasABC operon contributes to capsule biogenesis in group A Streptococcus. | Jason N Cole, Ramy K Aziz, Kirsten Kuipers, Anjuli M Timmer, Victor Nizet, Nina M van Sorge | Journal Of Bacteriology | 2012-09-07 |
| Hepatic expression of HCV RNA-dependent RNA polymerase triggers innate immune signaling and cytokine production. | Guann-Yi Yu, Guobin He, Chia-Yang Li, Martin Tang, Sergei Grivennikov, Wan-Ting Tsai, Ming-Sian Wu, Chih-Wen Hsu, Yu Tsai, Lily Hui-Ching Wang, Michael Karin | Molecular Cell | 2012-09-06 |
| Cell-intrinsic mechanism involving Siglec-5 associated with divergent outcomes of HIV-1 infection in human and chimpanzee CD4 T cells. | Paula C Soto, Maile Y Karris, Celsa A Spina, Douglas D Richman, Ajit Varki | Journal Of Molecular Medicine (Berlin, Germany) | 2012-09-04 |
| Network context and selection in the evolution to enzyme specificity. | Hojung Nam, Nathan E Lewis, Joshua A Lerman, Dae-Hee Lee, Roger L Chang, Donghyuk Kim, Bernhard O Palsson | Science (New York, N.Y.) | 2012-09-01 |
| Structure and interactions of the cytoplasmic domain of the Yersinia type III secretion protein YscD. | Alicia Gamez, Romila Mukerjea, Maher Alayyoubi, Majid Ghassemian, Partho Ghosh | Journal Of Bacteriology | 2012-08-31 |
| Microbiological analysis of nontyphoidal Salmonella strains causing distinct syndromes of bacteremia or enteritis in HIV/AIDS patients in San Diego, California. | Michael J Preziosi, Sean M Kandel, Donald G Guiney, Sara H Browne | Journal Of Clinical Microbiology | 2012-08-29 |
| Metagenomics and metatranscriptomics: windows on CF-associated viral and microbial communities. | Yan Wei Lim, Robert Schmieder, Matthew Haynes, Dana Willner, Mike Furlan, Merry Youle, Katelynn Abbott, Robert Edwards, Jose Evangelista, Douglas Conrad, Forest Rohwer | Journal Of Cystic Fibrosis : Official Journal Of The European Cystic Fibrosis Society | 2012-08-28 |
| The microbiome extends to subepidermal compartments of normal skin. | Teruaki Nakatsuji, Hsin-I Chiang, Shangi B Jiang, Harish Nagarajan, Karsten Zengler, Richard L Gallo | Nature Communications | 2012-08-28 |
| Viequeamide A, a cytotoxic member of the kulolide superfamily of cyclic depsipeptides from a marine button cyanobacterium. | Paul D Boudreau, Tara Byrum, Wei-Ting Liu, Pieter C Dorrestein, William H Gerwick | Journal Of Natural Products | 2012-08-27 |
| Robust expression and secretion of Xylanase1 in Chlamydomonas reinhardtii by fusion to a selection gene and processing with the FMDV 2A peptide. | Beth A Rasala, Philip A Lee, Zhouxin Shen, Steven P Briggs, Michael Mendez, Stephen P Mayfield | PloS One | 2012-08-24 |
| Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli. | Douglas McCloskey, Bernhard Ø Palsson, Adam M Feist | Molecular Systems Biology | 2012-08-23 |
| Exploiting diversity and synthetic biology for the production of algal biofuels. | D Ryan Georgianna, Stephen P Mayfield | Nature | 2012-08-17 |
| Human milk oligosaccharide concentration and risk of postnatal transmission of HIV through breastfeeding. | Lars Bode, Louise Kuhn, Hae-Young Kim, Lauren Hsiao, Caroline Nissan, Moses Sinkala, Chipepo Kankasa, Mwiya Mwiya, Donald M Thea, Grace M Aldrovandi | The American Journal Of Clinical Nutrition | 2012-08-15 |
| Iron acquisition in the marine actinomycete genus Salinispora is controlled by the desferrioxamine family of siderophores. | Alexandra A Roberts, Andrew W Schultz, Roland D Kersten, Pieter C Dorrestein, Bradley S Moore | FEMS Microbiology Letters | 2012-08-14 |
| A case-controlled study of successful aging in older HIV-infected adults. | Raeanne C Moore, David J Moore, Wesley K Thompson, Ipsit V Vahia, Igor Grant, Dilip V Jeste | The Journal Of Clinical Psychiatry | 2012-08-14 |
| Script generation of activities of daily living in HIV-associated neurocognitive disorders. | J Cobb Scott, Steven Paul Woods, Ofilio Vigil, Robert K Heaton, Igor Grant, Ronald J Ellis, Thomas D Marcotte, | Journal Of The International Neuropsychological Society : JINS | 2012-08-14 |
| Quantifying your body: a how-to guide from a systems biology perspective. | Larry Smarr | Biotechnology Journal | 2012-08-14 |
| Genetic Circuits in Salmonella typhimurium. | Arthur Prindle, Jangir Selimkhanov, Tal Danino, Phillip Samayoa, Anna Goldberg, Sangeeta N Bhatia, Jeff Hasty | ACS Synthetic Biology | 2012-08-09 |
| Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling. | Donghyuk Kim, Jay Sung-Joong Hong, Yu Qiu, Harish Nagarajan, Joo-Hyun Seo, Byung-Kwan Cho, Shih-Feng Tsai, Bernhard Ø Palsson | PLoS Genetics | 2012-08-09 |
| Antibacterial activities of liposomal linolenic acids against antibiotic-resistant Helicobacter pylori. | Marygorret Obonyo, Li Zhang, Soracha Thamphiwatana, Dissaya Pornpattananangkul, Victoria Fu, Liangfang Zhang | Molecular Pharmaceutics | 2012-08-06 |
| Interkingdom metabolic transformations captured by microbial imaging mass spectrometry. | Wilna J Moree, Vanessa V Phelan, Cheng-Hsuan Wu, Nuno Bandeira, Dale S Cornett, Brendan M Duggan, Pieter C Dorrestein | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2012-08-06 |
| Expression of sialic acids and other nonulosonic acids in Leptospira. | Jessica N Ricaldi, Michael A Matthias, Joseph M Vinetz, Amanda L Lewis | BMC Microbiology | 2012-08-01 |
| Cholera toxin disrupts barrier function by inhibiting exocyst-mediated trafficking of host proteins to intestinal cell junctions. | Annabel Guichard, Beatriz Cruz-Moreno, Beatriz Cruz Cruz-Moreno, Berenice Aguilar, Nina M van Sorge, Jennifer Kuang, Adrianne A Kurkciyan, Zhipeng Wang, Saiyu Hang, Guillaume P Pineton de Chambrun, Declan F McCole, Paula Watnick, Victor Nizet, Ethan Bier | Cell Host & Microbe | 2012-07-27 |
| Toll-like receptor 2-mediated intestinal injury and enteric tumor necrosis factor receptor I contribute to liver fibrosis in mice. | Phillipp Hartmann, Michael Haimerl, Magdalena Mazagova, David A Brenner, Bernd Schnabl | Gastroenterology | 2012-07-27 |
| Primer on agar-based microbial imaging mass spectrometry. | Jane Y Yang, Vanessa V Phelan, Ryan Simkovsky, Jeramie D Watrous, Rachelle M Trial, Tinya C Fleming, Roland Wenter, Bradley S Moore, Susan S Golden, Kit Pogliano, Pieter C Dorrestein | Journal Of Bacteriology | 2012-07-20 |
| Flavoenzyme-catalyzed atropo-selective N,C-bipyrrole homocoupling in marinopyrrole biosynthesis. | Kazuya Yamanaka, Katherine S Ryan, Tobias A M Gulder, Chambers C Hughes, Bradley S Moore | Journal Of The American Chemical Society | 2012-07-18 |
| Pathset graphs: a novel approach for comprehensive utilization of paired reads in genome assembly. | Son K Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A Pevzner, Max A Alekseyev | Journal Of Computational Biology : A Journal Of Computational Molecular Cell Biology | 2012-07-17 |
| Coibacins A-D, antileishmanial marine cyanobacterial polyketides with intriguing biosynthetic origins. | Marcy J Balunas, Manuel F Grosso, Francisco A Villa, Niclas Engene, Kerry L McPhail, Kevin Tidgewell, Laura M Pineda, Lena Gerwick, Carmenza Spadafora, Dennis E Kyle, William H Gerwick | Organic Letters | 2012-07-13 |
| Shotgun protein sequencing with meta-contig assembly. | Adrian Guthals, Karl R Clauser, Nuno Bandeira | Molecular & Cellular Proteomics : MCP | 2012-07-13 |
| Merochlorins A-D, cyclic meroterpenoid antibiotics biosynthesized in divergent pathways with vanadium-dependent chloroperoxidases. | Leonard Kaysser, Peter Bernhardt, Sang-Jip Nam, Sandra Loesgen, J Graham Ruby, Peter Skewes-Cox, Paul R Jensen, William Fenical, Bradley S Moore | Journal Of The American Chemical Society | 2012-07-12 |
| Characterizing HIV transmission networks across the United States. | Jeannette L Aldous, Sergei Kosakovsky Pond, Art Poon, Sonia Jain, Huifang Qin, James S Kahn, Mari Kitahata, Benigno Rodriguez, Ann M Dennis, Stephen L Boswell, Richard Haubrich, Davey M Smith | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2012-07-10 |
| Dynamic viral populations in hypersaline systems as revealed by metagenomic assembly. | Joanne B Emerson, Brian C Thomas, Karen Andrade, Eric E Allen, Karla B Heidelberg, Jillian F Banfield | Applied And Environmental Microbiology | 2012-07-06 |
| Commensal bacteria lipoteichoic acid increases skin mast cell antimicrobial activity against vaccinia viruses. | Zhenping Wang, Daniel T MacLeod, Anna Di Nardo | Journal Of Immunology (Baltimore, Md. : 1950) | 2012-07-06 |
| In silico method for modelling metabolism and gene product expression at genome scale. | Joshua A Lerman, Daniel R Hyduke, Haythem Latif, Vasiliy A Portnoy, Nathan E Lewis, Jeffrey D Orth, Alexandra C Schrimpe-Rutledge, Richard D Smith, Joshua N Adkins, Karsten Zengler, Bernhard O Palsson | Nature Communications | 2012-07-03 |
| Mooreia alkaloidigena gen. nov., sp. nov. and Catalinimonas alkaloidigena gen. nov., sp. nov., alkaloid-producing marine bacteria in the proposed families Mooreiaceae fam. nov. and Catalimonadaceae fam. nov. in the phylum Bacteroidetes. | Eun Ju Choi, Deanna S Beatty, Lauren A Paul, William Fenical, Paul R Jensen | International Journal Of Systematic And Evolutionary Microbiology | 2012-06-29 |
| Herpes viruses and HIV-1 drug resistance mutations influence the virologic and immunologic milieu of the male genital tract. | Sara Gianella, Sheldon R Morris, Christy Anderson, Celsa A Spina, Milenka V Vargas, Jason A Young, Douglas D Richman, Susan J Little, Davey M Smith | AIDS (London, England) | 2012-06-29 |
| A novel role for the transcription factor HIF-1α in the formation of mast cell extracellular traps. | Katja Branitzki-Heinemann, Cheryl Y Okumura, Lena Völlger, Yuko Kawakami, Toshiaki Kawakami, Hassan Y Naim, Victor Nizet, Maren Von Köckritz-Blickwede | The Biochemical Journal | 2012-06-29 |
| A gene ontology inferred from molecular networks. | Janusz Dutkowski, Michael Kramer, Michal A Surma, Rama Balakrishnan, J Michael Cherry, Nevan J Krogan, Trey Ideker | Nature Biotechnology | 2012-06-27 |
| Epithelial antimicrobial defence of the skin and intestine. | Richard L Gallo, Lora V Hooper | Nature Reviews. Immunology | 2012-06-25 |
| SEQuel: improving the accuracy of genome assemblies. | Roy Ronen, Christina Boucher, Hamidreza Chitsaz, Pavel Pevzner | Bioinformatics (Oxford, England) | 2012-06-13 |
| Metabolism of vertebrate amino sugars with N-glycolyl groups: resistance of α2-8-linked N-glycolylneuraminic acid to enzymatic cleavage. | Leela R L Davies, Oliver M T Pearce, Matthew B Tessier, Siavash Assar, Victoria Smutova, Maria Pajunen, Mizuki Sumida, Chihiro Sato, Ken Kitajima, Jukka Finne, Pascal Gagneux, Alexey Pshezhetsky, Robert Woods, Ajit Varki | The Journal Of Biological Chemistry | 2012-06-12 |
| Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks. | Yu Qiu, Harish Nagarajan, Mallory Embree, Wendy Shieu, Elisa Abate, Katy Juárez, Byung-Kwan Cho, James G Elkins, Kelly P Nevin, Christian L Barrett, Derek R Lovley, Bernhard O Palsson, Karsten Zengler | Nature Communications | 2012-06-07 |
| Specific inactivation of two immunomodulatory SIGLEC genes during human evolution. | Xiaoxia Wang, Nivedita Mitra, Ismael Secundino, Kalyan Banda, Pedro Cruz, Vered Padler-Karavani, Andrea Verhagen, Chris Reid, Martina Lari, Ermanno Rizzi, Carlotta Balsamo, Giorgio Corti, Gianluca De Bellis, Laura Longo, , William Beggs, David Caramelli, Sarah A Tishkoff, Toshiyuki Hayakawa, Eric D Green, James C Mullikin, Victor Nizet, Jack Bui, Ajit Varki | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2012-06-04 |
| Polarity and lymphocyte fate determination. | John T Chang | Current Opinion In Cell Biology | 2012-06-02 |
| The influence of HLA on HIV-associated neurocognitive impairment in Anhui, China. | Rachel D Schrier, Saurabh Gupta, Patricia Riggs, Lucette A Cysique, Scott Letendre, Hua Jin, Stephen A Spector, Kumud K Singh, Tanya Wolfson, Zunyou Wu, Kun Xue Hong, Xin Yu, Chuan Shi, Robert K Heaton, | PloS One | 2012-05-31 |
| Observing the invisible through imaging mass spectrometry, a window into the metabolic exchange patterns of microbes. | David J Gonzalez, Yuquan Xu, Yu-Liang Yang, Eduardo Esquenazi, Wei-Ting Liu, Anna Edlund, Tram Duong, Liangcheng Du, István Molnár, William H Gerwick, Paul R Jensen, Michael Fischbach, Chih-Chuang Liaw, Paul Straight, Victor Nizet, Pieter C Dorrestein | Journal Of Proteomics | 2012-05-26 |
| Selectively guanidinylated aminoglycosides as antibiotics. | Richard J Fair, Mary E Hensler, Wdee Thienphrapa, Quang N Dam, Victor Nizet, Yitzhak Tor | ChemMedChem | 2012-05-25 |
| PTH/PTHrP and vitamin D control antimicrobial peptide expression and susceptibility to bacterial skin infection. | Beda Muehleisen, Daniel D Bikle, Carlos Aguilera, Douglas W Burton, George L Sen, Leonard J Deftos, Richard L Gallo | Science Translational Medicine | 2012-05-25 |
| The spectral networks paradigm in high throughput mass spectrometry. | Adrian Guthals, Jeramie D Watrous, Pieter C Dorrestein, Nuno Bandeira | Molecular BioSystems | 2012-05-22 |
| Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses. | David T Pride, Julia Salzman, David A Relman | Environmental Microbiology | 2012-05-15 |
| Mass spectral molecular networking of living microbial colonies. | Jeramie Watrous, Patrick Roach, Theodore Alexandrov, Brandi S Heath, Jane Y Yang, Roland D Kersten, Menno van der Voort, Kit Pogliano, Harald Gross, Jos M Raaijmakers, Bradley S Moore, Julia Laskin, Nuno Bandeira, Pieter C Dorrestein | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2012-05-14 |
| Structure-function relationships of human milk oligosaccharides. | Lars Bode, Evelyn Jantscher-Krenn | Advances In Nutrition (Bethesda, Md.) | 2012-05-01 |
| Transmission of meropenem in breast milk. | Jason B Sauberan, John S Bradley, Jeffrey Blumer, Lisa M Stellwagen | The Pediatric Infectious Disease Journal | 2012-05-01 |
| A combined screening platform for HIV treatment failure and resistance. | Myres W Tilghman, Susanne May, Josué Pérez-Santiago, Caroline C Ignacio, Susan J Little, Douglas D Richman, Davey M Smith | PloS One | 2012-04-26 |
| Multifarious roles of sialic acids in immunity. | Ajit Varki, Pascal Gagneux | Annals Of The New York Academy Of Sciences | 2012-04-25 |
| Human milk oligosaccharides: every baby needs a sugar mama. | Lars Bode | Glycobiology | 2012-04-18 |
| Genetic complementation of the obligate marine actinobacterium Salinispora tropica with the large mechanosensitive channel gene mscL rescues cells from osmotic downshock. | Sergio A Bucarey, Kevin Penn, Lauren Paul, William Fenical, Paul R Jensen | Applied And Environmental Microbiology | 2012-04-06 |
| The Bacillus subtilis cannibalism toxin SDP collapses the proton motive force and induces autolysis. | Anne Lamsa, Wei-Ting Liu, Pieter C Dorrestein, Kit Pogliano | Molecular Microbiology | 2012-04-02 |
| The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity. | Nadine Ziemert, Sheila Podell, Kevin Penn, Jonathan H Badger, Eric Allen, Paul R Jensen | PloS One | 2012-03-29 |
| A road map for the development of community systems (CoSy) biology. | Karsten Zengler, Bernhard O Palsson | Nature Reviews. Microbiology | 2012-03-27 |
| Associations between phylogenetic clustering and HLA profile among HIV-infected individuals in San Diego, California. | Sanjay R Mehta, Sergei L Kosakovsky Pond, Jason A Young, Douglas Richman, Susan Little, Davey M Smith | The Journal Of Infectious Diseases | 2012-03-23 |
| Cost savings associated with testing of antibodies, antigens, and nucleic acids for diagnosis of acute HIV infection. | Maile Y Karris, Christy M Anderson, Sheldon R Morris, Davey M Smith, Susan J Little | Journal Of Clinical Microbiology | 2012-03-21 |
| Fast stochastic algorithm for simulating evolutionary population dynamics. | William H Mather, Jeff Hasty, Lev S Tsimring | Bioinformatics (Oxford, England) | 2012-03-21 |
| Exploiting adaptive laboratory evolution of Streptomyces clavuligerus for antibiotic discovery and overproduction. | Pep Charusanti, Nicole L Fong, Harish Nagarajan, Alban R Pereira, Howard J Li, Elisa A Abate, Yongxuan Su, William H Gerwick, Bernhard O Palsson | PloS One | 2012-03-21 |
| Comparative genomics reveals evidence of marine adaptation in Salinispora species. | Kevin Penn, Paul R Jensen | BMC Genomics | 2012-03-08 |
| Evaluation of Streptomyces coelicolor A3(2) as a heterologous expression host for the cyanobacterial protein kinase C activator lyngbyatoxin A. | Adam C Jones, Sabine Ottilie, Alessandra S Eustáquio, Daniel J Edwards, Lena Gerwick, Bradley S Moore, William H Gerwick | The FEBS Journal | 2012-03-01 |
| A new pharmacological agent (AKB-4924) stabilizes hypoxia inducible factor-1 (HIF-1) and increases skin innate defenses against bacterial infection. | Cheryl Y M Okumura, Andrew Hollands, Dan N Tran, Joshua Olson, Samira Dahesh, Maren von Köckritz-Blickwede, Wdee Thienphrapa, Courtney Corle, Seung Nam Jeung, Anna Kotsakis, Robert A Shalwitz, Randall S Johnson, Victor Nizet | Journal Of Molecular Medicine (Berlin, Germany) | 2012-02-28 |
| HSV-1 exploits the innate immune scavenger receptor MARCO to enhance epithelial adsorption and infection. | Daniel T MacLeod, Teruaki Nakatsuji, Kenshi Yamasaki, Lester Kobzik, Richard L Gallo | Nature Communications | 2012-02-28 |
| Novel phenol-soluble modulin derivatives in community-associated methicillin-resistant Staphylococcus aureus identified through imaging mass spectrometry. | David J Gonzalez, Cheryl Y Okumura, Andrew Hollands, Roland Kersten, Kathryn Akong-Moore, Morgan A Pence, Cheryl L Malone, Jaclyn Derieux, Bradley S Moore, Alexander R Horswill, Jack E Dixon, Pieter C Dorrestein, Victor Nizet | The Journal Of Biological Chemistry | 2012-02-27 |
| Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods. | Nathan E Lewis, Harish Nagarajan, Bernhard O Palsson | Nature Reviews. Microbiology | 2012-02-27 |
| Utility of quantitative polymerase chain reaction in leptospirosis diagnosis: association of level of leptospiremia and clinical manifestations in Sri Lanka. | Suneth B Agampodi, Michael A Matthias, Angelo C Moreno, Joseph M Vinetz | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2012-02-21 |
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| Two translation products of Yersinia yscQ assemble to form a complex essential to type III secretion. | Krzysztof P Bzymek, Brent Y Hamaoka, Partho Ghosh | Biochemistry | 2012-02-15 |
| Adenoma-linked barrier defects and microbial products drive IL-23/IL-17-mediated tumour growth. | Sergei I Grivennikov, Kepeng Wang, Daniel Mucida, C Andrew Stewart, Bernd Schnabl, Dominik Jauch, Koji Taniguchi, Guann-Yi Yu, Christoph H Osterreicher, Kenneth E Hung, Christian Datz, Ying Feng, Eric R Fearon, Mohamed Oukka, Lino Tessarollo, Vincenzo Coppola, Felix Yarovinsky, Hilde Cheroutre, Lars Eckmann, Giorgio Trinchieri, Michael Karin | Nature | 2012-02-08 |
| Antigen-specific acquired immunity in human brucellosis: implications for diagnosis, prognosis, and vaccine development. | Anthony P Cannella, Renee M Tsolis, Li Liang, Philip L Felgner, Mayuko Saito, Alessandro Sette, Eduardo Gotuzzo, Joseph M Vinetz | Frontiers In Cellular And Infection Microbiology | 2012-02-01 |
| Predicting outcomes of steady-state ¹³C isotope tracing experiments using Monte Carlo sampling. | Jan Schellenberger, Daniel C Zielinski, Wing Choi, Sunthosh Madireddi, Vasiliy Portnoy, David A Scott, Jennifer L Reed, Andrei L Osterman, Bernhard Palsson | BMC Systems Biology | 2012-01-30 |
| Gene transfer in Leptolyngbya sp. strain BL0902, a cyanobacterium suitable for production of biomass and bioproducts. | Arnaud Taton, Ewa Lis, Dawn M Adin, Guogang Dong, Scott Cookson, Steve A Kay, Susan S Golden, James W Golden | PloS One | 2012-01-24 |
| Human milk oligosaccharides reduce Entamoeba histolytica attachment and cytotoxicity in vitro. | Evelyn Jantscher-Krenn, Tineke Lauwaet, Laura A Bliss, Sharon L Reed, Frances D Gillin, Lars Bode | The British Journal Of Nutrition | 2012-01-23 |
| Honaucins A-C, potent inhibitors of inflammation and bacterial quorum sensing: synthetic derivatives and structure-activity relationships. | Hyukjae Choi, Samantha J Mascuch, Francisco A Villa, Tara Byrum, Margaret E Teasdale, Jennifer E Smith, Linda B Preskitt, David C Rowley, Lena Gerwick, William H Gerwick | Chemistry & Biology | 2012-01-20 |
| Novel bacterial metabolite merochlorin A demonstrates in vitro activity against multi-drug resistant methicillin-resistant Staphylococcus aureus. | George Sakoulas, Sang-Jip Nam, Sandra Loesgen, William Fenical, Paul R Jensen, Victor Nizet, Mary Hensler | PloS One | 2012-01-18 |
| Serial kinetics of the antibody response against the complete Brucella melitensis ORFeome in focal vertebral brucellosis. | Anthony P Cannella, Jennifer C Lin, Li Liang, Vidya Atluri, Eduardo Gotuzzo, Philip L Felgner, Renee M Tsolis, Joseph M Vinetz | Journal Of Clinical Microbiology | 2012-01-04 |
| Leukocyte inflammatory responses provoked by pneumococcal sialidase. | Yung-Chi Chang, Satoshi Uchiyama, Ajit Varki, Victor Nizet | MBio | 2012-01-03 |
| The bacterial chemical repertoire mediates metabolic exchange within gut microbiomes. | Christopher M Rath, Pieter C Dorrestein | Current Opinion In Microbiology | 2011-12-30 |
| The pore-forming protein Cry5B elicits the pathogenicity of Bacillus sp. against Caenorhabditis elegans. | Melanie F Kho, Audrey Bellier, Venkatasamy Balasubramani, Yan Hu, Wayne Hsu, Christina Nielsen-LeRoux, Shauna M McGillivray, Victor Nizet, Raffi V Aroian | PloS One | 2011-12-22 |
| Queueing up for enzymatic processing: correlated signaling through coupled degradation. | Natalie A Cookson, William H Mather, Tal Danino, Octavio Mondragón-Palomino, Ruth J Williams, Lev S Tsimring, Jeff Hasty | Molecular Systems Biology | 2011-12-20 |
| A sensing array of radically coupled genetic 'biopixels'. | Arthur Prindle, Phillip Samayoa, Ivan Razinkov, Tal Danino, Lev S Tsimring, Jeff Hasty | Nature | 2011-12-18 |
| Microbial metabolic exchange--the chemotype-to-phenotype link. | Vanessa V Phelan, Wei-Ting Liu, Kit Pogliano, Pieter C Dorrestein | Nature Chemical Biology | 2011-12-15 |
| Antagonistic gene transcripts regulate adaptation to new growth environments. | Bridget L Baumgartner, Matthew R Bennett, Michael Ferry, Tracy L Johnson, Lev S Tsimring, Jeff Hasty | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2011-12-12 |
| Antimicrobial peptides: old molecules with new ideas. | Teruaki Nakatsuji, Richard L Gallo | The Journal Of Investigative Dermatology | 2011-12-08 |
| Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. | David T Pride, Julia Salzman, Matthew Haynes, Forest Rohwer, Clara Davis-Long, Richard A White, Peter Loomer, Gary C Armitage, David A Relman | The ISME Journal | 2011-12-08 |
| Bacterial isolation by lectin-modified microengines. | Susana Campuzano, Jahir Orozco, Daniel Kagan, Maria Guix, Wei Gao, Sirilak Sattayasamitsathit, Jonathan C Claussen, Arben Merkoçi, Joseph Wang | Nano Letters | 2011-12-07 |
| Recent advances in single-cell studies of gene regulation. | Jangir Selimkhanov, Jeff Hasty, Lev S Tsimring | Current Opinion In Biotechnology | 2011-12-06 |
| Skin mast cells protect mice against vaccinia virus by triggering mast cell receptor S1PR2 and releasing antimicrobial peptides. | Zhenping Wang, Yuping Lai, Jamie J Bernard, Daniel T Macleod, Anna L Cogen, Bernard Moss, Anna Di Nardo | Journal Of Immunology (Baltimore, Md. : 1950) | 2011-12-02 |
| Ampicillin enhances daptomycin- and cationic host defense peptide-mediated killing of ampicillin- and vancomycin-resistant Enterococcus faecium. | George Sakoulas, Arnold S Bayer, Joseph Pogliano, Brian T Tsuji, Soo-Jin Yang, Nagendra N Mishra, Victor Nizet, Michael R Yeaman, Pamela A Moise | Antimicrobial Agents And Chemotherapy | 2011-11-28 |
| Microdiversity and evidence for high dispersal rates in the marine actinomycete 'Salinispora pacifica'. | Kelle C Freel, Anna Edlund, Paul R Jensen | Environmental Microbiology | 2011-11-28 |
| Role of innate immunity and the microbiota in liver fibrosis: crosstalk between the liver and gut. | Ekihiro Seki, Bernd Schnabl | The Journal Of Physiology | 2011-11-28 |
| Associations between virologic and immunologic dynamics in blood and in the male genital tract. | Sara Gianella, Matthew C Strain, Steffney E Rought, Milenka V Vargas, Susan J Little, Douglas D Richman, Celsa A Spina, Davey M Smith | Journal Of Virology | 2011-11-23 |
| Algae biofuels: versatility for the future of bioenergy. | Carla S Jones, Stephen P Mayfield | Current Opinion In Biotechnology | 2011-11-19 |
| Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity. | Andreas F Haas, Craig E Nelson, Linda Wegley Kelly, Craig A Carlson, Forest Rohwer, James J Leichter, Alex Wyatt, Jennifer E Smith | PloS One | 2011-11-18 |
| Entamoeba histolytica induces intestinal cathelicidins but is resistant to cathelicidin-mediated killing. | Eduardo R Cobo, Chen He, Ken Hirata, Grace Hwang, UyenPhuong Tran, Lars Eckmann, Richard L Gallo, Sharon L Reed | Infection And Immunity | 2011-11-14 |
| Deciphering the transcriptional regulatory logic of amino acid metabolism. | Byung-Kwan Cho, Stephen Federowicz, Young-Seoub Park, Karsten Zengler, Bernhard Ø Palsson | Nature Chemical Biology | 2011-11-13 |
| Analysis of two marine metagenomes reveals the diversity of plasmids in oceanic environments. | Yingfei Ma, Ian T Paulsen, Brian Palenik | Environmental Microbiology | 2011-11-08 |
| Multiplex de novo sequencing of peptide antibiotics. | Hosein Mohimani, Wei-Ting Liu, Yu-Liang Yang, Susana P Gaudêncio, William Fenical, Pieter C Dorrestein, Pavel A Pevzner | Journal Of Computational Biology : A Journal Of Computational Molecular Cell Biology | 2011-10-28 |
| Protein identification using top-down. | Xiaowen Liu, Yakov Sirotkin, Yufeng Shen, Gordon Anderson, Yihsuan S Tsai, Ying S Ting, David R Goodlett, Richard D Smith, Vineet Bafna, Pavel A Pevzner | Molecular & Cellular Proteomics : MCP | 2011-10-25 |
| Imaging mass spectrometry and genome mining via short sequence tagging identified the anti-infective agent arylomycin in Streptomyces roseosporus. | Wei-Ting Liu, Roland D Kersten, Yu-Liang Yang, Bradley S Moore, Pieter C Dorrestein | Journal Of The American Chemical Society | 2011-10-24 |
| Cumulative number of cell divisions as a meaningful timescale for adaptive laboratory evolution of Escherichia coli. | Dae-Hee Lee, Adam M Feist, Christian L Barrett, Bernhard Ø Palsson | PloS One | 2011-10-18 |
| Paired de bruijn graphs: a novel approach for incorporating mate pair information into genome assemblers. | Paul Medvedev, Son Pham, Mark Chaisson, Glenn Tesler, Pavel Pevzner | Journal Of Computational Biology : A Journal Of Computational Molecular Cell Biology | 2011-10-14 |
| An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92. | Pep Charusanti, Sadhana Chauhan, Kathleen McAteer, Joshua A Lerman, Daniel R Hyduke, Vladimir L Motin, Charles Ansong, Joshua N Adkins, Bernhard O Palsson | BMC Systems Biology | 2011-10-13 |
| C. elegans detects pathogen-induced translational inhibition to activate immune signaling. | Tiffany L Dunbar, Zhi Yan, Keir M Balla, Margery G Smelkinson, Emily R Troemel | Cell Host & Microbe | 2011-10-11 |
| A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011. | Jeffrey D Orth, Tom M Conrad, Jessica Na, Joshua A Lerman, Hojung Nam, Adam M Feist, Bernhard Ø Palsson | Molecular Systems Biology | 2011-10-11 |
| Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria. | Juan A Ugalde, Sheila Podell, Priya Narasingarao, Eric E Allen | Biology Direct | 2011-10-10 |
| A mass spectrometry-guided genome mining approach for natural product peptidogenomics. | Roland D Kersten, Yu-Liang Yang, Yuquan Xu, Peter Cimermancic, Sang-Jip Nam, William Fenical, Michael A Fischbach, Bradley S Moore, Pieter C Dorrestein | Nature Chemical Biology | 2011-10-09 |
| Deconstructing host-pathogen interactions in Drosophila. | Ethan Bier, Annabel Guichard | Disease Models & Mechanisms | 2011-10-06 |
| Phenotyping clinical resistance to chloroquine in Plasmodium vivax in northeastern Papua, Indonesia. | Puji B S Asih, Din Syafruddin, John Leake, Yohanna Sorontou, Mohamad Sadikin, Robert W Sauerwein, Joseph Vinetz, J Kevin Baird | International Journal For Parasitology. Drugs And Drug Resistance | 2011-10-05 |
| Family history of dementia predicts worse neuropsychological functioning among HIV-infected persons. | David J Moore, Miguel Arce, Suzanne Moseley, J Allen McCutchan, Jennifer Marquie-Beck, Donald R Franklin, Florin Vaida, Cristian L Achim, Justin McArthur, Susan Morgello, David M Simpson, Benjamin B Gelman, Ann C Collier, Christina M Marra, David B Clifford, Robert K Heaton, Igor Grant, | The Journal Of Neuropsychiatry And Clinical Neurosciences | 2011-09-28 |
| Isolation and characterization of a psychropiezophilic alphaproteobacterium. | Emiley A Eloe, Francesca Malfatti, Jennifer Gutierrez, Kevin Hardy, Wilford E Schmidt, Kit Pogliano, Joe Pogliano, Farooq Azam, Douglas H Bartlett | Applied And Environmental Microbiology | 2011-09-23 |
| Effects of myeloid differentiation primary response gene 88 (MyD88) activation on Helicobacter infection in vivo and induction of a Th17 response. | Marygorret Obonyo, Barry Rickman, Donald G Guiney | Helicobacter | 2011-09-20 |
| Molecular insight into invasive group A streptococcal disease. | Jason N Cole, Timothy C Barnett, Victor Nizet, Mark J Walker | Nature Reviews. Microbiology | 2011-09-16 |
| Non-lytic, actin-based exit of intracellular parasites from C. elegans intestinal cells. | Kathleen A Estes, Suzannah C Szumowski, Emily R Troemel | PLoS Pathogens | 2011-09-15 |
| Selection in coastal Synechococcus (cyanobacteria) populations evaluated from environmental metagenomes. | Vera Tai, Art F Y Poon, Ian T Paulsen, Brian Palenik | PloS One | 2011-09-09 |
| New insights into the biological effects of anthrax toxins: linking cellular to organismal responses. | Annabel Guichard, Victor Nizet, Ethan Bier | Microbes And Infection | 2011-09-08 |
| Cycloquest: identification of cyclopeptides via database search of their mass spectra against genome databases. | Hosein Mohimani, Wei-Ting Liu, Joshua S Mylne, Aaron G Poth, Michelle L Colgrave, Dat Tran, Michael E Selsted, Pieter C Dorrestein, Pavel A Pevzner | Journal Of Proteome Research | 2011-09-07 |
| Entrainment of a population of synthetic genetic oscillators. | Octavio Mondragón-Palomino, Tal Danino, Jangir Selimkhanov, Lev Tsimring, Jeff Hasty | Science (New York, N.Y.) | 2011-09-03 |
| Specific sorting of single bacterial cells with microfabricated fluorescence-activated cell sorting and tyramide signal amplification fluorescence in situ hybridization. | Chun H Chen, Sung H Cho, Hsin-I Chiang, Frank Tsai, Kun Zhang, Yu-Hwa Lo | Analytical Chemistry | 2011-08-31 |
| Evolution of secondary metabolite genes in three closely related marine actinomycete species. | Kelle C Freel, Sang-Jip Nam, William Fenical, Paul R Jensen | Applied And Environmental Microbiology | 2011-08-26 |
| Conservation of the C-type lectin fold for massive sequence variation in a Treponema diversity-generating retroelement. | Johanne Le Coq, Partho Ghosh | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2011-08-22 |
| Importance of Toll-like receptor 9 in host defense against M1T1 group A Streptococcus infections. | Annelies S Zinkernagel, Petr Hruz, Satoshi Uchiyama, Maren von Köckritz-Blickwede, Reto A Schuepbach, Tomoko Hayashi, Dennis A Carson, Victor Nizet | Journal Of Innate Immunity | 2011-08-19 |
| Upregulation of BST-2/Tetherin by HIV infection in vivo. | Stefanie Homann, Davey Smith, Susan Little, Douglas Richman, John Guatelli | Journal Of Virology | 2011-08-17 |
| Selective overproduction of the proteasome inhibitor salinosporamide A via precursor pathway regulation. | Anna Lechner, Alessandra S Eustáquio, Tobias A M Gulder, Mathias Hafner, Bradley S Moore | Chemistry & Biology | 2011-08-16 |
| Sequencing cyclic peptides by multistage mass spectrometry. | Hosein Mohimani, Yu-Liang Yang, Wei-Ting Liu, Pei-Wen Hsieh, Pieter C Dorrestein, Pavel A Pevzner | Proteomics | 2011-08-09 |
| Discovery and assembly-line biosynthesis of the lymphostin pyrroloquinoline alkaloid family of mTOR inhibitors in Salinispora bacteria. | Akimasa Miyanaga, Jeffrey E Janso, Leonard McDonald, Min He, Hongbo Liu, Laurel Barbieri, Alessandra S Eustáquio, Elisha N Fielding, Guy T Carter, Paul R Jensen, Xidong Feng, Margaret Leighton, Frank E Koehn, Bradley S Moore | Journal Of The American Chemical Society | 2011-08-09 |
| Imaging mass spectrometry in microbiology. | Jeramie D Watrous, Pieter C Dorrestein | Nature Reviews. Microbiology | 2011-08-08 |
| CD4 nadir is a predictor of HIV neurocognitive impairment in the era of combination antiretroviral therapy. | Ronald J Ellis, Jayraan Badiee, Florin Vaida, Scott Letendre, Robert K Heaton, David Clifford, Ann C Collier, Benjamin Gelman, Justin McArthur, Susan Morgello, J Allen McCutchan, Igor Grant, | AIDS (London, England) | 2011-07-14 |
| Structures and biosynthesis of the pyridinopyrones, polyenepyrones from a marine-derived Streptomyces species. | Takashi Fukuda, Eric D Miller, Benjamin R Clark, Ali Alnauman, Cormac D Murphy, Paul R Jensen, William Fenical | Journal Of Natural Products | 2011-07-13 |
| Phylogeny-guided isolation of ethyl tumonoate A from the marine cyanobacterium cf. Oscillatoria margaritifera. | Niclas Engene, Hyukjae Choi, Eduardo Esquenazi, Tara Byrum, Francisco A Villa, Zhengyu Cao, Thomas F Murray, Pieter C Dorrestein, Lena Gerwick, William H Gerwick | Journal Of Natural Products | 2011-07-13 |
| Microbial laboratory evolution in the era of genome-scale science. | Tom M Conrad, Nathan E Lewis, Bernhard Ø Palsson | Molecular Systems Biology | 2011-07-05 |
| Geographic distribution of secondary metabolite genes in the marine actinomycete Salinispora arenicola. | Anna Edlund, Sandra Loesgen, William Fenical, Paul R Jensen | Applied And Environmental Microbiology | 2011-07-01 |
| Ion mobility mass spectrometry enables the efficient detection and identification of halogenated natural products from cyanobacteria with minimal sample preparation. | Eduardo Esquenazi, Michael Daly, Tasneem Bahrainwala, William H Gerwick, Pieter C Dorrestein | Bioorganic & Medicinal Chemistry | 2011-07-01 |
| De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities. | Priya Narasingarao, Sheila Podell, Juan A Ugalde, Céline Brochier-Armanet, Joanne B Emerson, Jochen J Brocks, Karla B Heidelberg, Jillian F Banfield, Eric E Allen | The ISME Journal | 2011-06-30 |
| Microbial competition between Bacillus subtilis and Staphylococcus aureus monitored by imaging mass spectrometry. | David J Gonzalez, Nina M Haste, Andrew Hollands, Tinya C Fleming, Matthew Hamby, Kit Pogliano, Victor Nizet, Pieter C Dorrestein | Microbiology (Reading, England) | 2011-06-30 |
| Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp. strain PCC 7120 to combined-nitrogen deprivation. | Britt L Flaherty, F Van Nieuwerburgh, Steven R Head, James W Golden | BMC Genomics | 2011-06-28 |
| Fijimycins A-C, three antibacterial etamycin-class depsipeptides from a marine-derived Streptomyces sp. | Peng Sun, Katherine N Maloney, Sang-Jip Nam, Nina M Haste, Ritesh Raju, William Aalbersberg, Paul R Jensen, Victor Nizet, Mary E Hensler, William Fenical | Bioorganic & Medicinal Chemistry | 2011-06-26 |
| Bartonella henselae infection of prosthetic aortic valve associated with colitis. | Maile Young Karris, Christine M Litwin, Hong S Dong, Joseph Vinetz | Vector Borne And Zoonotic Diseases (Larchmont, N.Y.) | 2011-06-24 |
| Glycosaminoglycan binding facilitates entry of a bacterial pathogen into central nervous systems. | Yung-Chi Chang, Zhipeng Wang, Lindsay A Flax, Ding Xu, Jeffrey D Esko, Victor Nizet, Miriam J Baron | PLoS Pathogens | 2011-06-23 |
| Microbial symbiosis with the innate immune defense system of the skin. | Richard L Gallo, Teruaki Nakatsuji | The Journal Of Investigative Dermatology | 2011-06-23 |
| Error correction of high-throughput sequencing datasets with non-uniform coverage. | Paul Medvedev, Eric Scott, Boyko Kakaradov, Pavel Pevzner | Bioinformatics (Oxford, England) | 2011-06-21 |
| Highly sensitive disposable nucleic acid biosensors for direct bioelectronic detection in raw biological samples. | Filiz Kuralay, Susana Campuzano, David A Haake, Joseph Wang | Talanta | 2011-06-21 |
| Clinical Outcomes and Hospitalizations among Children Perinatally Infected with HIV-1 in Baja California, Mexico. | Rolando M Viani, Maria Rosario G Araneta, Graciano Lopez, Enrique Chacón-Cruz, Stephen A Spector | Journal Of The International Association Of Physicians In AIDS Care (Chicago, Ill. : 2002) | 2011-06-20 |
| Anthrax toxin induces macrophage death by p38 MAPK inhibition but leads to inflammasome activation via ATP leakage. | Syed Raza Ali, Anjuli M Timmer, Sameera Bilgrami, Eek Joong Park, Lars Eckmann, Victor Nizet, Michael Karin | Immunity | 2011-06-16 |
| Probing the in vivo biosynthesis of scytonemin, a cyanobacterial ultraviolet radiation sunscreen, through small scale stable isotope incubation studies and MALDI-TOF mass spectrometry. | Carla S Jones, Eduardo Esquenazi, Pieter C Dorrestein, William H Gerwick | Bioorganic & Medicinal Chemistry | 2011-06-14 |
| Differential expression and intrachromosomal evolution of the sghC1q genes in zebrafish (Danio rerio). | Tristan M Carland, Jeffrey B Locke, Victor Nizet, Lena Gerwick | Developmental And Comparative Immunology | 2011-06-06 |
| Going deeper: metagenome of a hadopelagic microbial community. | Emiley A Eloe, Douglas W Fadrosh, Mark Novotny, Lisa Zeigler Allen, Maria Kim, Mary-Jane Lombardo, Joyclyn Yee-Greenbaum, Shibu Yooseph, Eric E Allen, Roger Lasken, Shannon J Williamson, Douglas H Bartlett | PloS One | 2011-05-24 |
| Widespread occurrence of secondary lipid biosynthesis potential in microbial lineages. | Christine N Shulse, Eric E Allen | PloS One | 2011-05-19 |
| Protecting the boundary: the sentinel role of host defense peptides in the skin. | Jamie J Bernard, Richard L Gallo | Cellular And Molecular Life Sciences : CMLS | 2011-05-15 |
| Connecting chemotypes and phenotypes of cultured marine microbial assemblages by imaging mass spectrometry. | Yu-Liang Yang, Yuquan Xu, Roland D Kersten, Wei-Ting Liu, Michael J Meehan, Bradley S Moore, Nuno Bandeira, Pieter C Dorrestein | Angewandte Chemie (International Ed. In English) | 2011-05-13 |
| The PurR regulon in Escherichia coli K-12 MG1655. | Byung-Kwan Cho, Stephen A Federowicz, Mallory Embree, Young-Seoub Park, Donghyuk Kim, Bernhard Ø Palsson | Nucleic Acids Research | 2011-05-13 |
| The nonideal coiled coil of M protein and its multifarious functions in pathogenesis. | Partho Ghosh | Advances In Experimental Medicine And Biology | 2011-05-11 |
| Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula. | Adam C Jones, Emily A Monroe, Sheila Podell, Wolfgang R Hess, Sven Klages, Eduardo Esquenazi, Sherry Niessen, Heather Hoover, Michael Rothmann, Roger S Lasken, John R Yates, Richard Reinhardt, Michael Kube, Michael D Burkart, Eric E Allen, Pieter C Dorrestein, William H Gerwick, Lena Gerwick | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2011-05-09 |
| Functional and metabolic effects of adaptive glycerol kinase (GLPK) mutants in Escherichia coli. | M Kenyon Applebee, Andrew R Joyce, Tom M Conrad, Donald W Pettigrew, Bernhard Ø Palsson | The Journal Of Biological Chemistry | 2011-05-06 |
| Clinical factors related to brain structure in HIV: the CHARTER study. | Terry L Jernigan, Sarah L Archibald, Christine Fennema-Notestine, Michael J Taylor, Rebecca J Theilmann, Michelle D Julaton, Randy J Notestine, Tanya Wolfson, Scott L Letendre, Ronald J Ellis, Robert K Heaton, Anthony C Gamst, Donald R Franklin, David B Clifford, Ann C Collier, Benjamin B Gelman, Christina Marra, Justin C McArthur, J Allen McCutchan, Susan Morgello, David M Simpson, Igor Grant, | Journal Of Neurovirology | 2011-05-05 |
| An innate bactericidal oleic acid effective against skin infection of methicillin-resistant Staphylococcus aureus: a therapy concordant with evolutionary medicine. | Chao-Hsuan Chen, Yanhan Wang, Teruaki Nakatsuji, Yu-Tuseng Liu, Christos Zouboulis, Richard Gallo, Liangfang Zhang, Ming-Fa Hsieh, Chun-Ming Huang | Journal Of Microbiology And Biotechnology | 2011-05-03 |
| Bactericidal kinetics of marine-derived napyradiomycins against contemporary methicillin-resistant Staphylococcus aureus. | Nina M Haste, Lauge Farnaes, Varahenage R Perera, William Fenical, Victor Nizet, Mary E Hensler | Marine Drugs | 2011-04-21 |
| Pharmacological properties of the marine natural product marinopyrrole A against methicillin-resistant Staphylococcus aureus. | Nina M Haste, Chambers C Hughes, Dan N Tran, William Fenical, Paul R Jensen, Victor Nizet, Mary E Hensler | Antimicrobial Agents And Chemotherapy | 2011-04-18 |
| Policing starter unit selection of the enterocin type II polyketide synthase by the type II thioesterase EncL. | John A Kalaitzis, Qian Cheng, Dario Meluzzi, Longkuan Xiang, Miho Izumikawa, Pieter C Dorrestein, Bradley S Moore | Bioorganic & Medicinal Chemistry | 2011-04-16 |
| Fibrocyte-like cells recruited to the spleen support innate and adaptive immune responses to acute injury or infection. | Tatiana Kisseleva, Maren von Köckritz-Blickwede, Donna Reichart, Shauna M McGillvray, Gerhard Wingender, Mitchell Kronenberg, Christopher K Glass, Victor Nizet, David A Brenner | Journal Of Molecular Medicine (Berlin, Germany) | 2011-04-16 |
| Significant natural product biosynthetic potential of actinorhizal symbionts of the genus frankia, as revealed by comparative genomic and proteomic analyses. | Daniel W Udwary, Erin A Gontang, Adam C Jones, Carla S Jones, Andrew W Schultz, Jaclyn M Winter, Jane Y Yang, Nicholas Beauchemin, Todd L Capson, Benjamin R Clark, Eduardo Esquenazi, Alessandra S Eustáquio, Kelle Freel, Lena Gerwick, William H Gerwick, David Gonzalez, Wei-Ting Liu, Karla L Malloy, Katherine N Maloney, Markus Nett, Joshawna K Nunnery, Kevin Penn, Alejandra Prieto-Davo, Thomas L Simmons, Sara Weitz, Micheal C Wilson, Louis S Tisa, Pieter C Dorrestein, Bradley S Moore | Applied And Environmental Microbiology | 2011-04-15 |
| Adaptive laboratory evolution--harnessing the power of biology for metabolic engineering. | Vasiliy A Portnoy, Daniela Bezdan, Karsten Zengler | Current Opinion In Biotechnology | 2011-04-14 |
| Functionalized micromachines for selective and rapid isolation of nucleic acid targets from complex samples. | Daniel Kagan, Susana Campuzano, Shankar Balasubramanian, Filiz Kuralay, Gerd-Uwe Flechsig, Joseph Wang | Nano Letters | 2011-04-14 |
| Dopamine receptor D3 genetic polymorphism (rs6280TC) is associated with rates of cognitive impairment in methamphetamine-dependent men with HIV: preliminary findings. | Saurabh Gupta, Chad A Bousman, Gursharan Chana, Mariana Cherner, Robert K Heaton, Reena Deutsch, Ronald J Ellis, Igor Grant, Ian P Everall | Journal Of Neurovirology | 2011-04-14 |
| Cytotoxic veraguamides, alkynyl bromide-containing cyclic depsipeptides from the marine cyanobacterium cf. Oscillatoria margaritifera. | Emily Mevers, Wei-Ting Liu, Niclas Engene, Hosein Mohimani, Tara Byrum, Pavel A Pevzner, Pieter C Dorrestein, Carmenza Spadafora, William H Gerwick | Journal Of Natural Products | 2011-04-13 |
| Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage. | Rashel V Grindberg, Thomas Ishoey, Dumitru Brinza, Eduardo Esquenazi, R Cameron Coates, Wei-ting Liu, Lena Gerwick, Pieter C Dorrestein, Pavel Pevzner, Roger Lasken, William H Gerwick | PloS One | 2011-04-12 |
| Evaluation of pooled rapid HIV antibody screening of patients admitted to a San Diego Hospital. | Sanjay R Mehta, Vu T Nguyen, Georgina Osorio, Susan Little, Davey M Smith | Journal Of Virological Methods | 2011-04-12 |
| Propionibacterium acnes CAMP factor and host acid sphingomyelinase contribute to bacterial virulence: potential targets for inflammatory acne treatment. | Teruaki Nakatsuji, De-chu C Tang, Liangfang Zhang, Richard L Gallo, Chun-Ming Huang | PloS One | 2011-04-12 |
| Underestimated biodiversity as a major explanation for the perceived rich secondary metabolite capacity of the cyanobacterial genus Lyngbya. | Niclas Engene, Hyukjae Choi, Eduardo Esquenazi, Erin C Rottacker, Mark H Ellisman, Pieter C Dorrestein, William H Gerwick | Environmental Microbiology | 2011-04-07 |
| Gapped spectral dictionaries and their applications for database searches of tandem mass spectra. | Kyowon Jeong, Sangtae Kim, Nuno Bandeira, Pavel A Pevzner | Molecular & Cellular Proteomics : MCP | 2011-03-28 |
| Using phylogeography to characterize the origins of the HIV-1 subtype F epidemic in Romania. | Sanjay R Mehta, Joel O Wertheim, Wayne Delport, Luminita Ene, Gratiela Tardei, Dan Duiculescu, Sergei L Kosakovsky Pond, Davey M Smith | Infection, Genetics And Evolution : Journal Of Molecular Epidemiology And Evolutionary Genetics In Infectious Diseases | 2011-03-23 |
| Prevalence of hepatitis C virus antibody in newborn infants in southern California in 2003. | John S Bradley, Steve Graham, Gaston R Picchio, Duc J Vugia, Martin Kharrazi | The Pediatric Infectious Disease Journal | 2011-03-12 |
| Temporal dynamics of natural product biosynthesis in marine cyanobacteria. | Eduardo Esquenazi, Adam C Jones, Tara Byrum, Pieter C Dorrestein, William H Gerwick | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2011-03-10 |
| A stereoselective vanadium-dependent chloroperoxidase in bacterial antibiotic biosynthesis. | Peter Bernhardt, Tatsufumi Okino, Jaclyn M Winter, Akimasa Miyanaga, Bradley S Moore | Journal Of The American Chemical Society | 2011-03-08 |
| Global functional analyses of cellular responses to pore-forming toxins. | Cheng-Yuan Kao, Ferdinand C O Los, Danielle L Huffman, Shinichiro Wachi, Nicole Kloft, Matthias Husmann, Valbona Karabrahimi, Jean-Louis Schwartz, Audrey Bellier, Christine Ha, Youn Sagong, Hui Fan, Partho Ghosh, Mindy Hsieh, Chih-Shen Hsu, Li Chen, Raffi V Aroian | PLoS Pathogens | 2011-03-03 |
| Passive immunoprotection targeting a secreted CAMP factor of Propionibacterium acnes as a novel immunotherapeutic for acne vulgaris. | Pei-Feng Liu, Teruaki Nakatsuji, Wenhong Zhu, Richard L Gallo, Chun-Ming Huang | Vaccine | 2011-02-26 |
| Bacterial toxin-triggered drug release from gold nanoparticle-stabilized liposomes for the treatment of bacterial infection. | Dissaya Pornpattananangkul, Li Zhang, Sage Olson, Santosh Aryal, Marygorret Obonyo, Kenneth Vecchio, Chun-Ming Huang, Liangfang Zhang | Journal Of The American Chemical Society | 2011-02-23 |
| New models of microsporidiosis: infections in Zebrafish, C. elegans, and honey bee. | Emily R Troemel | PLoS Pathogens | 2011-02-17 |
| HLA alleles are associated with altered risk for disease progression and central nervous system impairment of HIV-infected children. | Kumud K Singh, Ping Kathryn Gray, Yan Wang, Terence Fenton, Rodney N Trout, Stephen A Spector | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2011-02-02 |
| Structure and biosynthesis of the marine streptomycete ansamycin ansalactam A and its distinctive branched chain polyketide extender unit. | Micheal C Wilson, Sang-Jip Nam, Tobias A M Gulder, Christopher A Kauffman, Paul R Jensen, William Fenical, Bradley S Moore | Journal Of The American Chemical Society | 2011-01-19 |
| Redox cycling amplified electrochemical detection of DNA hybridization: application to pathogen E. coli bacterial RNA. | Anne Walter, Jie Wu, Gerd-Uwe Flechsig, David A Haake, Joseph Wang | Analytica Chimica Acta | 2011-01-18 |
| Effects of traumatic brain injury on cognitive functioning and cerebral metabolites in HIV-infected individuals. | Kenny Lin, Michael J Taylor, Robert Heaton, Donald Franklin, Terry Jernigan, Christine Fennema-Notestine, Allen McCutchan, J Hampton Atkinson, Ronald J Ellis, Justin McArthur, Susan Morgello, David Simpson, Ann C Collier, Christina Marra, Benjamin Gelman, David Clifford, Igor Grant, | Journal Of Clinical And Experimental Neuropsychology | 2011-01-10 |
| Penetration and activation of brain endothelium by Salmonella enterica serovar Typhimurium. | Nina M van Sorge, Patricia A Zialcita, Sara H Browne, Darin Quach, Donald G Guiney, Kelly S Doran | The Journal Of Infectious Diseases | 2010-12-24 |
| FT-ICR-MS characterization of intermediates in the biosynthesis of the α-methylbutyrate side chain of lovastatin by the 277 kDa polyketide synthase LovF. | Michael J Meehan, Xinkai Xie, Xiling Zhao, Wei Xu, Yi Tang, Pieter C Dorrestein | Biochemistry | 2010-12-22 |
| HIV-associated neurocognitive disorders before and during the era of combination antiretroviral therapy: differences in rates, nature, and predictors. | Robert K Heaton, Donald R Franklin, Ronald J Ellis, J Allen McCutchan, Scott L Letendre, Shannon Leblanc, Stephanie H Corkran, Nichole A Duarte, David B Clifford, Steven P Woods, Ann C Collier, Christina M Marra, Susan Morgello, Monica Rivera Mindt, Michael J Taylor, Thomas D Marcotte, J Hampton Atkinson, Tanya Wolfson, Benjamin B Gelman, Justin C McArthur, David M Simpson, Ian Abramson, Anthony Gamst, Christine Fennema-Notestine, Terry L Jernigan, Joseph Wong, Igor Grant, , | Journal Of Neurovirology | 2010-12-21 |
| The discovery of salinosporamide K from the marine bacterium "Salinispora pacifica" by genome mining gives insight into pathway evolution. | Alessandra S Eustáquio, Sang-Jip Nam, Kevin Penn, Anna Lechner, Micheal C Wilson, William Fenical, Paul R Jensen, Bradley S Moore | Chembiochem : A European Journal Of Chemical Biology | 2010-12-15 |
| Neurocognitive functioning in acute or early HIV infection. | David J Moore, Scott L Letendre, Sheldon Morris, Anya Umlauf, Reena Deutsch, Davey M Smith, Susan Little, Alexandra Rooney, Donald R Franklin, Ben Gouaux, Shannon Leblanc, Debra Rosario, Christine Fennema-Notestine, Robert K Heaton, Ronald J Ellis, J Hampton Atkinson, Igor Grant, | Journal Of Neurovirology | 2010-12-15 |
| Malyngamide 2, an oxidized lipopeptide with nitric oxide inhibiting activity from a Papua New Guinea marine cyanobacterium. | Karla L Malloy, Francisco A Villa, Niclas Engene, Teatulohi Matainaho, Lena Gerwick, William H Gerwick | Journal Of Natural Products | 2010-12-14 |
| Practical 4'-phosphopantetheine active site discovery from proteomic samples. | Jordan L Meier, Anand D Patel, Sherry Niessen, Michael Meehan, Roland Kersten, Jane Y Yang, Michael Rothmann, Benjamin F Cravatt, Pieter C Dorrestein, Michael D Burkart, Vineet Bafna | Journal Of Proteome Research | 2010-12-13 |
| Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time. | David T Pride, Christine L Sun, Julia Salzman, Nitya Rao, Peter Loomer, Gary C Armitage, Jillian F Banfield, David A Relman | Genome Research | 2010-12-13 |
| Enteric dysbiosis associated with a mouse model of alcoholic liver disease. | Arthur W Yan, Derrick E Fouts, Johannes Brandl, Peter Stärkel, Manolito Torralba, Eckart Schott, Hide Tsukamoto, Karen E Nelson, David A Brenner, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2010-12-10 |
| Rewiring of genetic networks in response to DNA damage. | Sourav Bandyopadhyay, Monika Mehta, Dwight Kuo, Min-Kyung Sung, Ryan Chuang, Eric J Jaehnig, Bernd Bodenmiller, Katherine Licon, Wilbert Copeland, Michael Shales, Dorothea Fiedler, Janusz Dutkowski, Aude Guénolé, Haico van Attikum, Kevan M Shokat, Richard D Kolodner, Won-Ki Huh, Ruedi Aebersold, Michael-Christopher Keogh, Nevan J Krogan, Trey Ideker | Science (New York, N.Y.) | 2010-12-04 |
| Pooled nucleic acid testing to detect antiretroviral treatment failure in Mexico. | Myres W Tilghman, Don Diego Guerena, Alexei Licea, Josué Pérez-Santiago, Douglas D Richman, Susanne May, Davey M Smith | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2010-12-03 |
| Microbiology. Topping off a multiscale balancing act. | Joshua Lerman, Bernhard O Palsson | Science (New York, N.Y.) | 2010-11-25 |
| TLR2 expression is increased in rosacea and stimulates enhanced serine protease production by keratinocytes. | Kenshi Yamasaki, Kimberly Kanada, Daniel T Macleod, Andrew W Borkowski, Shin Morizane, Teruaki Nakatsuji, Anna L Cogen, Richard L Gallo | The Journal Of Investigative Dermatology | 2010-11-25 |
| Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment. | Emiley A Eloe, Christine N Shulse, Douglas W Fadrosh, Shannon J Williamson, Eric E Allen, Douglas H Bartlett | Environmental Microbiology Reports | 2010-11-24 |
| Diversity and distribution of microbial long-chain fatty acid biosynthetic genes in the marine environment. | Christine N Shulse, Eric E Allen | Environmental Microbiology | 2010-11-24 |
| Nitropyrrolins A-E, cytotoxic farnesyl-α-nitropyrroles from a marine-derived bacterium within the actinomycete family Streptomycetaceae. | Hak Cheol Kwon, Ana Paula D M Espindola, Jin-Soo Park, Alejandra Prieto-Davó, Mickea Rose, Paul R Jensen, William Fenical | Journal Of Natural Products | 2010-11-23 |
| Psychiatric context of human immunodeficiency virus infection among former plasma donors in rural China. | J Hampton Atkinson, Hua Jin, Chuan Shi, Xin Yu, Nichole A Duarte, Corinna Young Casey, Donald R Franklin, Ofilio Vigil, Lucette Cysique, Tanya Wolfson, P Katie Riggs, Saurabh Gupta, Scott Letendre, Thomas D Marcotte, Igor Grant, Zunyou Wu, Robert K Heaton, | Journal Of Affective Disorders | 2010-11-20 |
| Anabaena sp. strain PCC 7120 conR contains a LytR-CpsA-Psr domain, is developmentally regulated, and is essential for diazotrophic growth and heterocyst morphogenesis. | Rodrigo A Mella-Herrera, M Ramona Neunuebel, James W Golden | Microbiology (Reading, England) | 2010-11-18 |
| Staphylococcus aureus hijacks a skin commensal to intensify its virulence: immunization targeting β-hemolysin and CAMP factor. | Chih-Wei Lo, Yiu-Kay Lai, Yu-Tsueng Liu, Richard L Gallo, Chun-Ming Huang | The Journal Of Investigative Dermatology | 2010-11-18 |
| Integrating '-omics' and natural product discovery platforms to investigate metabolic exchange in microbiomes. | Jane Y Yang, Jessica R Karr, Jeramie D Watrous, Pieter C Dorrestein | Current Opinion In Chemical Biology | 2010-11-17 |
| RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media. | Tom M Conrad, Michael Frazier, Andrew R Joyce, Byung-Kwan Cho, Eric M Knight, Nathan E Lewis, Robert Landick, Bernhard Ø Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2010-11-05 |
| Genetic basis of growth adaptation of Escherichia coli after deletion of pgi, a major metabolic gene. | Pep Charusanti, Tom M Conrad, Eric M Knight, Karthik Venkataraman, Nicole L Fong, Bin Xie, Yuan Gao, Bernhard Ø Palsson | PLoS Genetics | 2010-11-04 |
| The challenges of integrating multi-omic data sets. | Bernhard Palsson, Karsten Zengler | Nature Chemical Biology | 2010-10-27 |
| Coevolution within a transcriptional network by compensatory trans and cis mutations. | Dwight Kuo, Katherine Licon, Sourav Bandyopadhyay, Ryan Chuang, Colin Luo, Justin Catalana, Timothy Ravasi, Kai Tan, Trey Ideker | Genome Research | 2010-10-26 |
| The relatedness of HIV epidemics in the United States-Mexico border region. | Sanjay R Mehta, Wayne Delport, Kimberly C Brouwer, Stephen Espitia, Thomas Patterson, Sergei Kosakovsky Pond, Steffanie A Strathdee, Davey M Smith | AIDS Research And Human Retroviruses | 2010-10-26 |
| Cyclooxygenase-2 enhances antimicrobial peptide expression and killing of Staphylococcus aureus. | Jamie J Bernard, Richard L Gallo | Journal Of Immunology (Baltimore, Md. : 1950) | 2010-10-22 |
| Comparison of methods to detect HIV dual infection. | Mary Pacold, Davey Smith, Susan Little, Pok Man Cheng, Parris Jordan, Caroline Ignacio, Douglas Richman, Sergei Kosakovsky Pond | AIDS Research And Human Retroviruses | 2010-10-18 |
| Hybrid isoprenoid secondary metabolite production in terrestrial and marine actinomycetes. | Kelley A Gallagher, William Fenical, Paul R Jensen | Current Opinion In Biotechnology | 2010-10-13 |
| A human MAP kinase interactome. | Sourav Bandyopadhyay, Chih-yuan Chiang, Jyoti Srivastava, Merril Gersten, Suhaila White, Russell Bell, Cornelia Kurschner, Christopher H Martin, Mike Smoot, Sudhir Sahasrabudhe, Diane L Barber, Sumit K Chanda, Trey Ideker | Nature Methods | 2010-10-12 |
| Simplicity and complexity in the cyanobacterial circadian clock mechanism. | Guogang Dong, Yong-Ick Kim, Susan S Golden | Current Opinion In Genetics & Development | 2010-10-09 |
| Ternary surface monolayers for ultrasensitive (zeptomole) amperometric detection of nucleic acid hybridization without signal amplification. | Jie Wu, Susana Campuzano, Colin Halford, David A Haake, Joseph Wang | Analytical Chemistry | 2010-09-30 |
| Systems biology--old wine in a new bottle or is the bottle changing the wine? | Joseph H Nadeau, Shankar Subramaniam | Wiley Interdisciplinary Reviews. Systems Biology And Medicine | 2010-09-14 |
| Nuclease expression by Staphylococcus aureus facilitates escape from neutrophil extracellular traps. | Evelien T M Berends, Alexander R Horswill, Nina M Haste, Marc Monestier, Victor Nizet, Maren von Köckritz-Blickwede | Journal Of Innate Immunity | 2010-09-10 |
| Streptococcal inhibitor of complement promotes innate immune resistance phenotypes of invasive M1T1 group A Streptococcus. | Morgan A Pence, Suzan H M Rooijakkers, Anna L Cogen, Jason N Cole, Andrew Hollands, Richard L Gallo, Victor Nizet | Journal Of Innate Immunity | 2010-09-01 |
| M protein and hyaluronic acid capsule are essential for in vivo selection of covRS mutations characteristic of invasive serotype M1T1 group A Streptococcus. | Jason N Cole, Morgan A Pence, Maren von Köckritz-Blickwede, Andrew Hollands, Richard L Gallo, Mark J Walker, Victor Nizet | MBio | 2010-08-31 |
| Imaging mass spectrometry of intraspecies metabolic exchange revealed the cannibalistic factors of Bacillus subtilis. | Wei-Ting Liu, Yu-Liang Yang, Yuquan Xu, Anne Lamsa, Nina M Haste, Jane Y Yang, Julio Ng, David Gonzalez, Craig D Ellermeier, Paul D Straight, Pavel A Pevzner, Joe Pogliano, Victor Nizet, Kit Pogliano, Pieter C Dorrestein | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2010-08-30 |
| Characterization of 5-chloro-5-deoxy-D-ribose 1-dehydrogenase in chloroethylmalonyl coenzyme A biosynthesis: substrate and reaction profiling. | Andrew J Kale, Ryan P McGlinchey, Bradley S Moore | The Journal Of Biological Chemistry | 2010-08-24 |
| Shared biosynthesis of the saliniketals and rifamycins in Salinispora arenicola is controlled by the sare1259-encoded cytochrome P450. | Micheal C Wilson, Tobias A M Gulder, Taifo Mahmud, Bradley S Moore | Journal Of The American Chemical Society | 2010-08-24 |
| Obesity and alcohol synergize to increase the risk of incident hepatocellular carcinoma in men. | Rohit Loomba, Hwai-I Yang, Jun Su, David Brenner, Uchenna Iloeje, Chien-Jen Chen | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2010-08-17 |
| Deletion of genes encoding cytochrome oxidases and quinol monooxygenase blocks the aerobic-anaerobic shift in Escherichia coli K-12 MG1655. | Vasiliy A Portnoy, David A Scott, Nathan E Lewis, Yekaterina Tarasova, Andrei L Osterman, Bernhard Ø Palsson | Applied And Environmental Microbiology | 2010-08-13 |
| Streptococcal M1 protein constructs a pathological host fibrinogen network. | Pauline Macheboeuf, Cosmo Buffalo, Chi-yu Fu, Annelies S Zinkernagel, Jason N Cole, John E Johnson, Victor Nizet, Partho Ghosh | Nature | 2010-08-09 |
| Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering. | Dwight Kuo, Kai Tan, Guy Zinman, Timothy Ravasi, Ziv Bar-Joseph, Trey Ideker | Genome Biology | 2010-07-23 |
| A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution. | Pier-Luc Tremblay, Zarath M Summers, Richard H Glaven, Kelly P Nevin, Karsten Zengler, Christian L Barrett, Yu Qiu, Bernhard O Palsson, Derek R Lovley | Environmental Microbiology | 2010-07-20 |
| Novel mechanism for the generation of human xeno-autoantibodies against the nonhuman sialic acid N-glycolylneuraminic acid. | Rachel E Taylor, Christopher J Gregg, Vered Padler-Karavani, Darius Ghaderi, Hai Yu, Shengshu Huang, Ricardo U Sorensen, Xi Chen, Jaime Inostroza, Victor Nizet, Ajit Varki | The Journal Of Experimental Medicine | 2010-07-12 |
| Human transferrin confers serum resistance against Bacillus anthracis. | Suzan H M Rooijakkers, Suzanne L Rasmussen, Shauna M McGillivray, Thomas B Bartnikas, Anne B Mason, Arthur M Friedlander, Victor Nizet | The Journal Of Biological Chemistry | 2010-07-08 |
| Analyzing protease specificity and detecting in vivo proteolytic events using tandem mass spectrometry. | Nitin Gupta, Kim K Hixson, David E Culley, Richard D Smith, Pavel A Pevzner | Proteomics | 2010-07-03 |
| Structural and operational complexity of the Geobacter sulfurreducens genome. | Yu Qiu, Byung-Kwan Cho, Young Seoub Park, Derek Lovley, Bernhard Ø Palsson, Karsten Zengler | Genome Research | 2010-06-30 |
| Clostridiolysin S, a post-translationally modified biotoxin from Clostridium botulinum. | David J Gonzalez, Shaun W Lee, Mary E Hensler, Andrew L Markley, Samira Dahesh, Douglas A Mitchell, Nuno Bandeira, Victor Nizet, Jack E Dixon, Pieter C Dorrestein | The Journal Of Biological Chemistry | 2010-06-25 |
| Elimination of thermodynamically infeasible loops in steady-state metabolic models. | Jan Schellenberger, Nathan E Lewis, Bernhard Ø Palsson | Biophysical Journal | 2010-06-10 |
| De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads. | Harish Nagarajan, Jessica E Butler, Anna Klimes, Yu Qiu, Karsten Zengler, Joy Ward, Nelson D Young, Barbara A Methé, Bernhard Ø Palsson, Derek R Lovley, Christian L Barrett | PloS One | 2010-06-08 |
| Dynamic SpoIIIE assembly mediates septal membrane fission during Bacillus subtilis sporulation. | Tinya C Fleming, Jae Yen Shin, Sang-Hyuk Lee, Eric Becker, Kerwyn Casey Huang, Carlos Bustamante, Kit Pogliano | Genes & Development | 2010-06-03 |
| Amplified potentiometric transduction of DNA hybridization using ion-loaded liposomes. | Karin Y Chumbimuni-Torres, Jie Wu, Corbin Clawson, Michal Galik, Anne Walter, Gerd-Uwe Flechsig, Eric Bakker, Liangfang Zhang, Joseph Wang | The Analyst | 2010-05-28 |
| Fijiolides A and B, inhibitors of TNF-alpha-induced NFkappaB activation, from a marine-derived sediment bacterium of the genus Nocardiopsis. | Sang-Jip Nam, Susana P Gaudêncio, Christopher A Kauffman, Paul R Jensen, Tamara P Kondratyuk, Laura E Marler, John M Pezzuto, William Fenical | Journal Of Natural Products | 2010-05-21 |
| Loss of the heparan sulfate sulfotransferase, Ndst1, in mammary epithelial cells selectively blocks lobuloalveolar development in mice. | Brett E Crawford, Omai B Garner, Joseph R Bishop, David Y Zhang, Kevin T Bush, Sanjay K Nigam, Jeffrey D Esko | PloS One | 2010-05-18 |
| Cryptosphaerolide, a cytotoxic Mcl-1 inhibitor from a marine-derived ascomycete related to the genus Cryptosphaeria. | Hyuncheol Oh, Paul R Jensen, Brian T Murphy, Catherine Fiorilla, John F Sullivan, Timothy Ramsey, William Fenical | Journal Of Natural Products | 2010-05-14 |
| O-Acetylation of sialic acid on Group B Streptococcus inhibits neutrophil suppression and virulence. | Shannon Weiman, Satoshi Uchiyama, Feng-Ying C Lin, Donald Chaffin, Ajit Varki, Victor Nizet, Amanda L Lewis | The Biochemical Journal | 2010-05-13 |
| Activation of TLR2 by a small molecule produced by Staphylococcus epidermidis increases antimicrobial defense against bacterial skin infections. | Yuping Lai, Anna L Cogen, Katherine A Radek, Hyun Jeong Park, Daniel T Macleod, Anke Leichtle, Allen F Ryan, Anna Di Nardo, Richard L Gallo | The Journal Of Investigative Dermatology | 2010-05-13 |
| Neurobehavioral effects of human immunodeficiency virus infection among former plasma donors in rural China. | Robert K Heaton, Lucette A Cysique, Hua Jin, Chuan Shi, Xin Yu, Scott Letendre, Donald R Franklin, Christopher Ake, Ofilio Vigil, J Hampton Atkinson, Thomas D Marcotte, Igor Grant, Zunyou Wu, | Journal Of Neurovirology | 2010-05-07 |
| Marine natural product drug discovery: Leads for treatment of inflammation, cancer, infections, and neurological disorders. | Francisco A Villa, Lena Gerwick | Immunopharmacology And Immunotoxicology | 2010-05-06 |
| APOE epsilon4 and MBL-2 O/O genotypes are associated with neurocognitive impairment in HIV-infected plasma donors. | Stephen A Spector, Kumud K Singh, Saurabh Gupta, Lucette A Cystique, Hua Jin, Scott Letendre, Rachel Schrier, Zunyou Wu, Kun X Hong, Xin Yu, Chuan Shi, Robert K Heaton, | AIDS (London, England) | 2010-05-06 |
| The unique mechanistic transformations involved in the biosynthesis of modular natural products from marine cyanobacteria. | Adam C Jones, Emily A Monroe, Eli B Eisman, Lena Gerwick, David H Sherman, William H Gerwick | Natural Product Reports | 2010-05-04 |
| Mercury speciation in marine sediments under sulfate-limited conditions. | Seunghee Han, Priya Narasingarao, Anna Obraztsova, Joris Gieskes, Aaron C Hartmann, Bradley M Tebo, Eric E Allen, Dimitri D Deheyn | Environmental Science & Technology | 2010-05-01 |
| Adaptive evolution of Escherichia coli K-12 MG1655 during growth on a Nonnative carbon source, L-1,2-propanediol. | Dae-Hee Lee, Bernhard Ø Palsson | Applied And Environmental Microbiology | 2010-04-30 |
| Structures, reactivities, and antibiotic properties of the marinopyrroles A-F. | Chambers C Hughes, Christopher A Kauffman, Paul R Jensen, William Fenical | The Journal Of Organic Chemistry | 2010-04-22 |
| Evaluation of Streptococcus iniae killed bacterin and live attenuated vaccines in hybrid striped bass through injection and bath immersion. | Jeffrey B Locke, Mike R Vicknair, Vaughn E Ostland, Victor Nizet, John T Buchanan | Diseases Of Aquatic Organisms | 2010-04-21 |
| The essentiality of alpha-2-macroglobulin in human salivary innate immunity against new H1N1 swine origin influenza A virus. | Chao-Hsuan Chen, Xing-Quan Zhang, Chih-Wei Lo, Pei-Feng Liu, Yu-Tsueng Liu, Richard L Gallo, Ming-Fa Hsieh, Robert T Schooley, Chun-Ming Huang | Proteomics | 2010-04-15 |
| Anthrax toxins cooperatively inhibit endocytic recycling by the Rab11/Sec15 exocyst. | Annabel Guichard, Shauna M McGillivray, Beatriz Cruz-Moreno, Nina M van Sorge, Victor Nizet, Ethan Bier | Nature | 2010-04-12 |
| Chemo-enzymatic synthesis of the carbohydrate antigen N-glycolylneuraminic acid from glucose. | Oliver M T Pearce, Ajit Varki | Carbohydrate Research | 2010-04-09 |
| A solvent-exposed patch in chaperone-bound YopE is required for translocation by the type III secretion system. | Loren Rodgers, Romila Mukerjea, Sara Birtalan, Devorah Friedberg, Partho Ghosh | Journal Of Bacteriology | 2010-04-09 |
| SpoIID-mediated peptidoglycan degradation is required throughout engulfment during Bacillus subtilis sporulation. | Jennifer Gutierrez, Rachelle Smith, Kit Pogliano | Journal Of Bacteriology | 2010-04-09 |
| The origins of sexually transmitted HIV among men who have sex with men. | David M Butler, Wayne Delport, Sergei L Kosakovsky Pond, Malcolm K Lakdawala, Pok Man Cheng, Susan J Little, Douglas D Richman, Davey M Smith | Science Translational Medicine | 2010-04-08 |
| Indolent infectious tenosynovitis afflicting rheumatoid patients treated with tumor necrosis factor inhibitors: case report. | Reid Abrams, Maria Savoia, Joseph Vinetz, A Rashard Dacus | The Journal Of Hand Surgery | 2010-03-29 |
| Peptide identification from mixture tandem mass spectra. | Jian Wang, Josué Pérez-Santiago, Jonathan E Katz, Parag Mallick, Nuno Bandeira | Molecular & Cellular Proteomics : MCP | 2010-03-27 |
| Toll-like receptor 9 promotes steatohepatitis by induction of interleukin-1beta in mice. | Kouichi Miura, Yuzo Kodama, Sayaka Inokuchi, Bernd Schnabl, Tomonori Aoyama, Hirohide Ohnishi, Jerrold M Olefsky, David A Brenner, Ekihiro Seki | Gastroenterology | 2010-03-27 |
| Activity of the streptogramin antibiotic etamycin against methicillin-resistant Staphylococcus aureus. | Nina M Haste, Varahenage R Perera, Katherine N Maloney, Dan N Tran, Paul Jensen, William Fenical, Victor Nizet, Mary E Hensler | The Journal Of Antibiotics | 2010-03-26 |
| Building better bugs to deliver biologics in intestinal inflammation. | Kim E Barrett | Gut | 2010-03-25 |
| Incidence and nature of cognitive decline over 1 year among HIV-infected former plasma donors in China. | Lucette A Cysique, Scott L Letendre, Christopher Ake, Hua Jin, Donald R Franklin, Saurabh Gupta, Chuan Shi, Xin Yu, Zunyou Wu, Ian S Abramson, Igor Grant, Robert K Heaton, | AIDS (London, England) | 2010-03-20 |
| Introduction to high-pressure bioscience and biotechnology. | Douglas H Bartlett | Annals Of The New York Academy Of Sciences | 2010-03-18 |
| Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models. | Nathan E Lewis, Kim K Hixson, Tom M Conrad, Joshua A Lerman, Pep Charusanti, Ashoka D Polpitiya, Joshua N Adkins, Gunnar Schramm, Samuel O Purvine, Daniel Lopez-Ferrer, Karl K Weitz, Roland Eils, Rainer König, Richard D Smith, Bernhard Ø Palsson | Molecular Systems Biology | 2010-03-18 |
| Relative over-reactivity of human versus chimpanzee lymphocytes: implications for the human diseases associated with immune activation. | Paula C Soto, Lance L Stein, Nancy Hurtado-Ziola, Stephen M Hedrick, Ajit Varki | Journal Of Immunology (Baltimore, Md. : 1950) | 2010-03-15 |
| What is flux balance analysis? | Jeffrey D Orth, Ines Thiele, Bernhard Ø Palsson | Nature Biotechnology | 2010-03-10 |
| Vaccination targeting surface FomA of Fusobacterium nucleatum against bacterial co-aggregation: Implication for treatment of periodontal infection and halitosis. | Pei-Feng Liu, Wenyuan Shi, Wenhong Zhu, Jeffery W Smith, Shie-Liang Hsieh, Richard L Gallo, Chun-Ming Huang | Vaccine | 2010-02-26 |
| Crossbyanols A-D, toxic brominated polyphenyl ethers from the Hawai'ian bloom-forming Cyanobacterium Leptolyngbya crossbyana. | Hyukjae Choi, Niclas Engene, Jennifer E Smith, Linda B Preskitt, William H Gerwick | Journal Of Natural Products | 2010-02-23 |
| Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions. | Aarash Bordbar, Nathan E Lewis, Jan Schellenberger, Bernhard Ø Palsson, Neema Jamshidi | Molecular Systems Biology | 2010-02-22 |
| CC chemokine ligand 3 overcomes the bacteriocidal and phagocytic defect of macrophages and hastens recovery from experimental otitis media in TNF-/- mice. | Anke Leichtle, Michelle Hernandez, Joerg Ebmeyer, Kenshi Yamasaki, Yuping Lai, Katherine Radek, Yun-Hoon Choung, Sara Euteneuer, Kwang Pak, Richard Gallo, Stephen I Wasserman, Allen F Ryan | Journal Of Immunology (Baltimore, Md. : 1950) | 2010-02-17 |
| Role of secondary sialic acid binding sites in influenza N1 neuraminidase. | Jeffrey C Sung, Adam W Van Wynsberghe, Rommie E Amaro, Wilfred W Li, J Andrew McCammon | Journal Of The American Chemical Society | 2010-02-17 |
| Sequence-based analysis of secondary-metabolite biosynthesis in marine actinobacteria. | Erin A Gontang, Susana P Gaudêncio, William Fenical, Paul R Jensen | Applied And Environmental Microbiology | 2010-02-12 |
| Statins enhance formation of phagocyte extracellular traps. | Ohn A Chow, Maren von Köckritz-Blickwede, A Taylor Bright, Mary E Hensler, Annelies S Zinkernagel, Anna L Cogen, Richard L Gallo, Marc Monestier, Yanming Wang, Christopher K Glass, Victor Nizet | Cell Host & Microbe | 2010-02-11 |
| Total synthesis of the ammosamides. | Chambers C Hughes, William Fenical | Journal Of The American Chemical Society | 2010-02-06 |
| Dynamics of marine bacterial and phytoplankton populations using multiplex liquid bead array technology. | Xavier Mayali, Brian Palenik, Ronald S Burton | Environmental Microbiology | 2010-01-26 |
| NF-kappaB activation in hypothalamic pro-opiomelanocortin neurons is essential in illness- and leptin-induced anorexia. | Pil-Geum Jang, Cherl Namkoong, Gil Myoung Kang, Man-Wook Hur, Seung-Whan Kim, Geun Hyang Kim, Yeoungsup Kang, Min-Jae Jeon, Eun Hee Kim, Myung-Shik Lee, Michael Karin, Ja-Hyun Baik, Joong-Yeol Park, Ki-Up Lee, Young-Bum Kim, Min-Seon Kim | The Journal Of Biological Chemistry | 2010-01-22 |
| bZIP transcription factor zip-2 mediates an early response to Pseudomonas aeruginosa infection in Caenorhabditis elegans. | Kathleen A Estes, Tiffany L Dunbar, Jennifer R Powell, Frederick M Ausubel, Emily R Troemel | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2010-01-21 |
| Engineering fluorometabolite production: fluorinase expression in Salinispora tropica Yields Fluorosalinosporamide. | Alessandra S Eustáquio, David O'Hagan, Bradley S Moore | Journal Of Natural Products | 2010-01-21 |
| Transposon assisted gene insertion technology (TAGIT): a tool for generating fluorescent fusion proteins. | James A Gregory, Eric C Becker, James Jung, Ida Tuwatananurak, Kit Pogliano | PloS One | 2010-01-15 |
| Functional characterization of the cyclomarin/cyclomarazine prenyltransferase CymD directs the biosynthesis of unnatural cyclic peptides. | Andrew W Schultz, Chad A Lewis, Michael R Luzung, Phil S Baran, Bradley S Moore | Journal Of Natural Products | 2010-01-09 |
| The effects of top-down versus bottom-up control on benthic coral reef community structure. | Jennifer E Smith, Cynthia L Hunter, Celia M Smith | Oecologia | 2010-01-08 |
| Apical surface expression of aspartic protease Plasmepsin 4, a potential transmission-blocking target of the plasmodium ookinete. | Fengwu Li, Kailash P Patra, Charles A Yowell, John B Dame, Karen Chin, Joseph M Vinetz | The Journal Of Biological Chemistry | 2010-01-07 |
| Staphylococcus epidermidis antimicrobial delta-toxin (phenol-soluble modulin-gamma) cooperates with host antimicrobial peptides to kill group A Streptococcus. | Anna L Cogen, Kenshi Yamasaki, Jun Muto, Katheryn M Sanchez, Laura Crotty Alexander, Jackelyn Tanios, Yuping Lai, Judy E Kim, Victor Nizet, Richard L Gallo | PloS One | 2010-01-05 |
| Sebum free fatty acids enhance the innate immune defense of human sebocytes by upregulating beta-defensin-2 expression. | Teruaki Nakatsuji, Mandy C Kao, Liangfang Zhang, Christos C Zouboulis, Richard L Gallo, Chun-Ming Huang | The Journal Of Investigative Dermatology | 2009-12-24 |
| Genome-wide association data reveal a global map of genetic interactions among protein complexes. | Gregory Hannum, Rohith Srivas, Aude Guénolé, Haico van Attikum, Nevan J Krogan, Richard M Karp, Trey Ideker | PLoS Genetics | 2009-12-24 |
| Linking species concepts to natural product discovery in the post-genomic era. | Paul R Jensen | Journal Of Industrial Microbiology & Biotechnology | 2009-12-24 |
| An MHC-I cytoplasmic domain/HIV-1 Nef fusion protein binds directly to the mu subunit of the AP-1 endosomal coat complex. | Rajendra Kumar Singh, David Lau, Colleen M Noviello, Partho Ghosh, John C Guatelli | PloS One | 2009-12-18 |
| Protease polymorphisms in HIV-1 subtype CRF01_AE represent selection by antiretroviral therapy and host immune pressure. | Weerawat Manosuthi, David M Butler, Josué Pérez-Santiago, Art Fy Poon, Satish K Pillai, Sanjay R Mehta, Mary E Pacold, Douglas D Richman, Sergei Kosakovsky Pond, Davey M Smith | AIDS (London, England) | 2009-12-17 |
| Cell cycle-dependent variations in protein concentration. | Natalie A Cookson, Scott W Cookson, Lev S Tsimring, Jeff Hasty | Nucleic Acids Research | 2009-12-17 |
| Selective MyD88-dependent pathway inhibition by the cyanobacterial natural product malyngamide F acetate. | Francisco A Villa, Kelly Lieske, Lena Gerwick | European Journal Of Pharmacology | 2009-12-16 |
| M1T1 group A streptococcal pili promote epithelial colonization but diminish systemic virulence through neutrophil extracellular entrapment. | Laura E Crotty Alexander, Heather C Maisey, Anjuli M Timmer, Suzan H M Rooijakkers, Richard L Gallo, Maren von Köckritz-Blickwede, Victor Nizet | Journal Of Molecular Medicine (Berlin, Germany) | 2009-12-04 |
| Gene expression before HAART initiation predicts HIV-infected individuals at risk of poor CD4+ T-cell recovery. | Christopher H Woelk, Nadejda Beliakova-Bethell, Miguel Goicoechea, Yingdong Zhao, Pinyi Du, Steffney E Rought, Jean Lozach, Josué Pérez-Santiago, Douglas D Richman, Davey M Smith, Susan J Little | AIDS (London, England) | 2009-12-03 |
| Central role of the cell in microbial ecology. | Karsten Zengler | Microbiology And Molecular Biology Reviews : MMBR | 2009-12-01 |
| Transcriptional analysis of the jamaicamide gene cluster from the marine cyanobacterium Lyngbya majuscula and identification of possible regulatory proteins. | Adam C Jones, Lena Gerwick, David Gonzalez, Pieter C Dorrestein, William H Gerwick | BMC Microbiology | 2009-12-01 |
| Commensal bacteria regulate Toll-like receptor 3-dependent inflammation after skin injury. | Yuping Lai, Anna Di Nardo, Teruaki Nakatsuji, Anke Leichtle, Yan Yang, Anna L Cogen, Zi-Rong Wu, Lora V Hooper, Richard R Schmidt, Sonja von Aulock, Katherine A Radek, Chun-Ming Huang, Allen F Ryan, Richard L Gallo | Nature Medicine | 2009-11-22 |
| Expansion of the mycobacterial "PUPylome". | Jeramie Watrous, Kristin Burns, Wei-Ting Liu, Anand Patel, Vivian Hook, Vineet Bafna, Clifton E Barry, Steve Bark, Pieter C Dorrestein | Molecular BioSystems | 2009-11-16 |
| Potentiometric detection of DNA hybridization using enzyme-induced metallization and a silver ion selective electrode. | Jie Wu, Karin Y Chumbimuni-Torres, Michal Galik, Chongdee Thammakhet, David A Haake, Joseph Wang | Analytical Chemistry | 2009-11-14 |
| Inflammation and colon cancer. | Janos Terzić, Sergei Grivennikov, Eliad Karin, Michael Karin | Gastroenterology | 2009-11-13 |
| Human milk oligosaccharides: prebiotics and beyond. | Lars Bode | Nutrition Reviews | 2009-11-13 |
| Translating metabolic exchange with imaging mass spectrometry. | Yu-Liang Yang, Yuquan Xu, Paul Straight, Pieter C Dorrestein | Nature Chemical Biology | 2009-11-08 |
| CYP2C19 genetic variants affect nelfinavir pharmacokinetics and virologic response in HIV-1-infected children receiving highly active antiretroviral therapy. | Akihiko Saitoh, Edmund Capparelli, Francesca Aweeka, Elizabeth Sarles, Kumud K Singh, Andrea Kovacs, Sandra K Burchett, Andrew Wiznia, Sharon Nachman, Terence Fenton, Stephen A Spector | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2009-11-06 |
| Lodopyridone, a structurally unprecedented alkaloid from a marine actinomycete. | Katherine N Maloney, John B Macmillan, Christopher A Kauffman, Paul R Jensen, Antonio G Dipasquale, Arnold L Rheingold, William Fenical | Organic Letters | 2009-11-04 |
| The transcription unit architecture of the Escherichia coli genome. | Byung-Kwan Cho, Karsten Zengler, Yu Qiu, Young Seoub Park, Eric M Knight, Christian L Barrett, Yuan Gao, Bernhard Ø Palsson | Nature Biotechnology | 2009-11-01 |
| Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations. | Tom M Conrad, Andrew R Joyce, M Kenyon Applebee, Christian L Barrett, Bin Xie, Yuan Gao, Bernhard Ø Palsson | Genome Biology | 2009-10-22 |
| Palmyramide A, a cyclic depsipeptide from a Palmyra Atoll collection of the marine cyanobacterium Lyngbya majuscula. | Masatoshi Taniguchi, Joshawna K Nunnery, Niclas Engene, Eduardo Esquenazi, Tara Byrum, Pieter C Dorrestein, William H Gerwick | Journal Of Natural Products | 2009-10-21 |
| Epidermal growth factor receptor translocation to the mitochondria: regulation and effect. | Michelle L Demory, Julie L Boerner, Robert Davidson, William Faust, Tsuyoshi Miyake, Icksoo Lee, Maik Hüttemann, Robert Douglas, Gabriel Haddad, Sarah J Parsons | The Journal Of Biological Chemistry | 2009-10-19 |
| Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli. | Adam M Feist, Daniel C Zielinski, Jeffrey D Orth, Jan Schellenberger, Markus J Herrgard, Bernhard Ø Palsson | Metabolic Engineering | 2009-10-17 |
| Secondary metabolomics: natural products mass spectrometry goes global. | Roland D Kersten, Pieter C Dorrestein | ACS Chemical Biology | 2009-10-13 |
| An integrated systems analysis implicates EGR1 downregulation in simian immunodeficiency virus encephalitis-induced neural dysfunction. | Merril Gersten, Mehrdad Alirezaei, Maria Cecilia Garibaldi Marcondes, Claudia Flynn, Timothy Ravasi, Trey Ideker, Howard S Fox | The Journal Of Neuroscience : The Official Journal Of The Society For Neuroscience | 2009-10-09 |
| A ribosome-nascent chain sensor of membrane protein biogenesis in Bacillus subtilis. | Shinobu Chiba, Anne Lamsa, Kit Pogliano | The EMBO Journal | 2009-09-24 |
| Pooled nucleic acid testing to identify antiretroviral treatment failure during HIV infection. | Susanne May, Anthony Gamst, Richard Haubrich, Constance Benson, Davey M Smith | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2009-09-23 |
| The novel polysaccharide deacetylase homologue Pdi contributes to virulence of the aquatic pathogen Streptococcus iniae. | Carlo J E Milani, Ramy K Aziz, Jeffrey B Locke, Samira Dahesh, Victor Nizet, John T Buchanan | Microbiology (Reading, England) | 2009-09-17 |
| Select resistance-associated mutations in blood are associated with lower CSF viral loads and better neuropsychological performance. | George K Hightower, Scott L Letendre, Mariana Cherner, Sarah A Gibson, Ronald J Ellis, Tanya J Wolfson, Anthony C Gamst, Caroline C Ignacio, Robert K Heaton, Igor Grant, Douglas D Richman, Davey M Smith, | Virology | 2009-09-16 |
| Function-oriented biosynthesis of beta-lactone proteasome inhibitors in Salinispora tropica. | Markus Nett, Tobias A M Gulder, Andrew J Kale, Chambers C Hughes, Bradley S Moore | Journal Of Medicinal Chemistry | 2009-09-15 |
| The use of pooled viral load testing to identify antiretroviral treatment failure. | Davey M Smith, Susanne J May, Josué Pérez-Santiago, Matthew C Strain, Caroline C Ignacio, Richard H Haubrich, Douglas D Richman, Constance A Benson, Susan J Little | AIDS (London, England) | 2009-09-05 |
| Selective antimicrobial action is provided by phenol-soluble modulins derived from Staphylococcus epidermidis, a normal resident of the skin. | Anna L Cogen, Kenshi Yamasaki, Katheryn M Sanchez, Robert A Dorschner, Yuping Lai, Daniel T MacLeod, Justin W Torpey, Michael Otto, Victor Nizet, Judy E Kim, Richard L Gallo | The Journal Of Investigative Dermatology | 2009-08-28 |
| A synchronized quorum of genetic clocks. | Tal Danino, Octavio Mondragón-Palomino, Lev Tsimring, Jeff Hasty | Nature | 2009-08-20 |
| The efficiency of single genome amplification and sequencing is improved by quantitation and use of a bioinformatics tool. | David M Butler, Mary E Pacold, Parris S Jordan, Douglas D Richman, Davey M Smith | Journal Of Virological Methods | 2009-08-19 |
| The surface-anchored NanA protein promotes pneumococcal brain endothelial cell invasion. | Satoshi Uchiyama, Aaron F Carlin, Arya Khosravi, Shannon Weiman, Anirban Banerjee, Darin Quach, George Hightower, Tim J Mitchell, Kelly S Doran, Victor Nizet | The Journal Of Experimental Medicine | 2009-08-17 |
| Whole-genome microarray analyses of Synechococcus-Vibrio interactions. | Vera Tai, Ian T Paulsen, Katherine Phillippy, D Aaron Johnson, Brian Palenik | Environmental Microbiology | 2009-07-30 |
| Genetic and biochemical modulation of sialic acid O-acetylation on group B Streptococcus: phenotypic and functional impact. | Shannon Weiman, Samira Dahesh, Aaron F Carlin, Ajit Varki, Victor Nizet, Amanda L Lewis | Glycobiology | 2009-07-30 |
| Can the protein occupancy landscape show the topologically isolated chromosomal domains in the E. coli genome?: An exciting prospect. | Byung-Kwan Cho, Bernhard Ø Palsson | Molecular Cell | 2009-07-29 |
| Innovations in host and microbial sialic acid biosynthesis revealed by phylogenomic prediction of nonulosonic acid structure. | Amanda L Lewis, Nolan Desa, Elizabeth E Hansen, Yuriy A Knirel, Jeffrey I Gordon, Pascal Gagneux, Victor Nizet, Ajit Varki | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2009-07-28 |
| Biosynthesis of salinosporamides from alpha,beta-unsaturated fatty acids: implications for extending polyketide synthase diversity. | Yuan Liu, Christopher Hazzard, Alessandra S Eustáquio, Kevin A Reynolds, Bradley S Moore | Journal Of The American Chemical Society | 2009-07-16 |
| Group B Streptococcus suppression of phagocyte functions by protein-mediated engagement of human Siglec-5. | Aaron F Carlin, Yung-Chi Chang, Thomas Areschoug, Gunnar Lindahl, Nancy Hurtado-Ziola, Charles C King, Ajit Varki, Victor Nizet | The Journal Of Experimental Medicine | 2009-07-13 |
| Biosynthesis of the salinosporamide A polyketide synthase substrate chloroethylmalonyl-coenzyme A from S-adenosyl-L-methionine. | Alessandra S Eustáquio, Ryan P McGlinchey, Yuan Liu, Christopher Hazzard, Laura L Beer, Galina Florova, Mamoun M Alhamadsheh, Anna Lechner, Andrew J Kale, Yoshihisa Kobayashi, Kevin A Reynolds, Bradley S Moore | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2009-07-09 |
| Modulation of intestinal barrier properties by probiotics: role in reversing colitis. | Silvia C Resta-Lenert, Kim E Barrett | Annals Of The New York Academy Of Sciences | 2009-06-23 |
| Histone H4 is a major component of the antimicrobial action of human sebocytes. | Dong-Youn Lee, Chun-Ming Huang, Teruaki Nakatsuji, Diane Thiboutot, Sun-Ah Kang, Marc Monestier, Richard L Gallo | The Journal Of Investigative Dermatology | 2009-06-18 |
| ClpX contributes to innate defense peptide resistance and virulence phenotypes of Bacillus anthracis. | Shauna M McGillivray, Celia M Ebrahimi, Nathan Fisher, Mojgan Sabet, Dawn X Zhang, Yahua Chen, Nina M Haste, Raffi V Aroian, Richard L Gallo, Donald G Guiney, Arthur M Friedlander, Theresa M Koehler, Victor Nizet | Journal Of Innate Immunity | 2009-06-18 |
| NOD2 contributes to cutaneous defense against Staphylococcus aureus through alpha-toxin-dependent innate immune activation. | Petr Hruz, Annelies S Zinkernagel, Gabriela Jenikova, Gregory J Botwin, Jean-Pierre Hugot, Michael Karin, Victor Nizet, Lars Eckmann | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2009-06-16 |
| Coastal strains of marine Synechococcus species exhibit increased tolerance to copper shock and a distinctive transcriptional response relative to those of open-ocean strains. | Rhona K Stuart, Chris L Dupont, D Aaron Johnson, Ian T Paulsen, Brian Palenik | Applied And Environmental Microbiology | 2009-06-05 |
| Innate barriers against infection and associated disorders. | Richard L Gallo, Victor Nizet | Drug Discovery Today. Disease Mechanisms | 2009-06-04 |
| Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria. | Kevin Penn, Caroline Jenkins, Markus Nett, Daniel W Udwary, Erin A Gontang, Ryan P McGlinchey, Brian Foster, Alla Lapidus, Sheila Podell, Eric E Allen, Bradley S Moore, Paul R Jensen | The ISME Journal | 2009-05-28 |
| Chasing the treasures of the sea - bacterial marine natural products. | Tobias A M Gulder, Bradley S Moore | Current Opinion In Microbiology | 2009-05-28 |
| Innate immunity turned inside-out: antimicrobial defense by phagocyte extracellular traps. | Maren von Köckritz-Blickwede, Victor Nizet | Journal Of Molecular Medicine (Berlin, Germany) | 2009-05-16 |
| A novel codon insert in protease of clade B HIV type 1. | Parris S Jordan, Art Poon, Joseph Eron, Kathleen Squires, Caroline Ignacio, Douglas D Richman, Davey M Smith | AIDS Research And Human Retroviruses | 2009-04-29 |
| The group B streptococcal serine-rich repeat 1 glycoprotein mediates penetration of the blood-brain barrier. | Nina M van Sorge, Darin Quach, Michael A Gurney, Paul M Sullam, Victor Nizet, Kelly S Doran | The Journal Of Infectious Diseases | 2009-04-28 |
| Antimicrobial property of lauric acid against Propionibacterium acnes: its therapeutic potential for inflammatory acne vulgaris. | Teruaki Nakatsuji, Mandy C Kao, Jia-You Fang, Christos C Zouboulis, Liangfang Zhang, Richard L Gallo, Chun-Ming Huang | The Journal Of Investigative Dermatology | 2009-04-23 |
| A dietary non-human sialic acid may facilitate hemolytic-uremic syndrome. | Jonas C Löfling, Adrienne W Paton, Nissi M Varki, James C Paton, Ajit Varki | Kidney International | 2009-04-22 |
| Dynamic reprogramming of transcription factors to and from the subtelomere. | H Craig Mak, Lorraine Pillus, Trey Ideker | Genome Research | 2009-04-16 |
| Exploring the chemistry and biology of vanadium-dependent haloperoxidases. | Jaclyn M Winter, Bradley S Moore | The Journal Of Biological Chemistry | 2009-04-10 |
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| Temporal variation of Synechococcus clades at a coastal Pacific Ocean monitoring site. | Vera Tai, Brian Palenik | The ISME Journal | 2009-04-09 |
| The radiocarbon signature of microorganisms in the mesopelagic ocean. | Roberta L Hansman, Sheila Griffin, Jordan T Watson, Ellen R M Druffel, Anitra E Ingalls, Ann Pearson, Lihini I Aluwihare | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2009-04-06 |
| Potent inhibitors of pro-inflammatory cytokine production produced by a marine-derived bacterium. | Wendy K Strangman, Hak Cheol Kwon, David Broide, Paul R Jensen, William Fenical | Journal Of Medicinal Chemistry | 2009-03-28 |
| Indole acts as an extracellular cue regulating gene expression in Vibrio cholerae. | Ryan S Mueller, Sinem Beyhan, Simran G Saini, Fitnat H Yildiz, Douglas H Bartlett | Journal Of Bacteriology | 2009-03-27 |
| Connecting extracellular metabolomic measurements to intracellular flux states in yeast. | Monica L Mo, Bernhard O Palsson, Markus J Herrgård | BMC Systems Biology | 2009-03-25 |
| Characterizing loop dynamics and ligand recognition in human- and avian-type influenza neuraminidases via generalized born molecular dynamics and end-point free energy calculations. | Rommie E Amaro, Xiaolin Cheng, Ivaylo Ivanov, Dong Xu, J Andrew McCammon | Journal Of The American Chemical Society | 2009-03-20 |
| Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization. | Ines Thiele, Neema Jamshidi, Ronan M T Fleming, Bernhard Ø Palsson | PLoS Computational Biology | 2009-03-13 |
| Structural and functional dissection of the heterocyclic peptide cytotoxin streptolysin S. | Douglas A Mitchell, Shaun W Lee, Morgan A Pence, Andrew L Markley, Joyce D Limm, Victor Nizet, Jack E Dixon | The Journal Of Biological Chemistry | 2009-03-13 |
| Drug targets in hepatitis B virus infection. | Lance L Stein, Rohit Loomba | Infectious Disorders Drug Targets | 2009-03-12 |
| Decomposing complex reaction networks using random sampling, principal component analysis and basis rotation. | Christian L Barrett, Markus J Herrgard, Bernhard Palsson | BMC Systems Biology | 2009-03-06 |
| M1 protein allows Group A streptococcal survival in phagocyte extracellular traps through cathelicidin inhibition. | Xavier Lauth, Maren von Köckritz-Blickwede, Case W McNamara, Sandra Myskowski, Annelies S Zinkernagel, Bernard Beall, Partho Ghosh, Richard L Gallo, Victor Nizet | Journal Of Innate Immunity | 2009-02-20 |
| In vitro biosynthesis of unnatural enterocin and wailupemycin polyketides. | John A Kalaitzis, Qian Cheng, Paul M Thomas, Neil L Kelleher, Bradley S Moore | Journal Of Natural Products | 2009-02-14 |
| AMPed up immunity: how antimicrobial peptides have multiple roles in immune defense. | Yuping Lai, Richard L Gallo | Trends In Immunology | 2009-02-13 |
| Distinct glycan topology for avian and human sialopentasaccharide receptor analogues upon binding different hemagglutinins: a molecular dynamics perspective. | Dong Xu, E Irene Newhouse, Rommie E Amaro, Hsing C Pao, Lily S Cheng, Phineus R L Markwick, J Andrew McCammon, Wilfred W Li, Peter W Arzberger | Journal Of Molecular Biology | 2009-02-05 |
| Host genetic determinants of human immunodeficiency virus infection and disease progression in children. | Kumud K Singh, Stephen A Spector | Pediatric Research | 2009-02-05 |
| Molecular mimicry of host sialylated glycans allows a bacterial pathogen to engage neutrophil Siglec-9 and dampen the innate immune response. | Aaron F Carlin, Satoshi Uchiyama, Yung-Chi Chang, Amanda L Lewis, Victor Nizet, Ajit Varki | Blood | 2009-02-04 |
| A novel vaccine targeting Fusobacterium nucleatum against abscesses and halitosis. | Pei-Feng Liu, Susan Kinder Haake, Richard L Gallo, Chun-Ming Huang | Vaccine | 2009-01-20 |
| Bacillus subtilis MinC destabilizes FtsZ-rings at new cell poles and contributes to the timing of cell division. | James A Gregory, Eric C Becker, Kit Pogliano | Genes & Development | 2009-01-15 |
| Marinisporolides, polyene-polyol macrolides from a marine actinomycete of the new genus Marinispora. | Hak Cheol Kwon, Christopher A Kauffman, Paul R Jensen, William Fenical | The Journal Of Organic Chemistry | 2009-01-10 |
| Arenamides A-C, cytotoxic NFkappaB inhibitors from the marine actinomycete Salinispora arenicola. | Ratnakar N Asolkar, Kelle C Freel, Paul R Jensen, William Fenical, Tamara P Kondratyuk, Eun-Jung Park, John M Pezzuto | Journal Of Natural Products | 2009-01-02 |
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| A public health model for the molecular surveillance of HIV transmission in San Diego, California. | Davey M Smith, Susanne J May, Samantha Tweeten, Lydia Drumright, Mary E Pacold, Sergei L Kosakovsky Pond, Rick L Pesano, Yolanda S Lie, Douglas D Richman, Simon D W Frost, Christopher H Woelk, Susan J Little | AIDS (London, England) | 2008-12-23 |
| The ammosamides: structures of cell cycle modulators from a marine-derived Streptomyces species. | Chambers C Hughes, John B MacMillan, Susana P Gaudêncio, Paul R Jensen, William Fenical | Angewandte Chemie (International Ed. In English) | 2008-12-19 |
| Pleocytosis is associated with disruption of HIV compartmentalization between blood and cerebral spinal fluid viral populations. | Davey M Smith, Selene Zárate, Hai Shao, Satish K Pillai, Scott L Letendre, Joseph K Wong, Douglas D Richman, Simon D W Frost, Ronald J Ellis, | Virology | 2008-12-18 |
| Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli. | Byung-Kwan Cho, Christian L Barrett, Eric M Knight, Young Seoub Park, Bernhard Ø Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2008-12-03 |
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| Proteasomal protein degradation in Mycobacteria is dependent upon a prokaryotic ubiquitin-like protein. | Kristin E Burns, Wei-Ting Liu, Helena I M Boshoff, Pieter C Dorrestein, Clifton E Barry | The Journal Of Biological Chemistry | 2008-11-21 |
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| Neurobehavioral effects of human immunodeficiency virus infection among former plasma donors in rural China. | Robert K Heaton, Lucette A Cysique, Hua Jin, Chuan Shi, Xin Yu, Scott Letendre, Donald R Franklin, Christopher Ake, Ofilio Vigil, J Hampton Atkinson, Thomas D Marcotte, Igor Grant, Zunyou Wu, | Journal Of Neurovirology | 2008-11-11 |
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| A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. | Markus J Herrgård, Neil Swainston, Paul Dobson, Warwick B Dunn, K Yalçin Arga, Mikko Arvas, Nils Blüthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novère, Peter Li, Wolfram Liebermeister, Monica L Mo, Ana Paula Oliveira, Dina Petranovic, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasić, Dieter Weichart, Roger Brent, David S Broomhead, Hans V Westerhoff, Betül Kirdar, Merja Penttilä, Edda Klipp, Bernhard Ø Palsson, Uwe Sauer, Stephen G Oliver, Pedro Mendes, Jens Nielsen, Douglas B Kell | Nature Biotechnology | 2008-10-11 |
| Associations of chemokine receptor polymorphisms With HIV-1 mother-to-child transmission in sub-Saharan Africa: possible modulation of genetic effects by antiretrovirals. | Kumud K Singh, Michael D Hughes, Jie Chen, Kelesitse Phiri, Christine Rousseau, Louise Kuhn, Anna Coutsoudis, J Brooks Jackson, Laura A Guay, Philippa Musoke, Francis Mmiro, Richard D Semba, Stephen A Spector | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2008-10-11 |
| A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm. | Sheila Podell, Terry Gaasterland, Eric E Allen | BMC Bioinformatics | 2008-10-07 |
| Frequency of mitochondrial 12S ribosomal RNA variants in an adult cystic fibrosis population. | Douglas J Conrad, Antine E Stenbit, Erika M Zettner, Ivan Wick, Colleen Eckhardt, Gary Hardiman | Pharmacogenetics And Genomics | 2008-10-03 |
| Biomechanical ordering of dense cell populations. | Dmitri Volfson, Scott Cookson, Jeff Hasty, Lev S Tsimring | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2008-10-01 |
| Recent advances in understanding the molecular basis of group B Streptococcus virulence. | Heather C Maisey, Kelly S Doran, Victor Nizet | Expert Reviews In Molecular Medicine | 2008-09-22 |
| Top-down analysis of temporal hierarchy in biochemical reaction networks. | Neema Jamshidi, Bernhard Ø Palsson | PLoS Computational Biology | 2008-09-12 |
| Multi-spectra peptide sequencing and its applications to multistage mass spectrometry. | Nuno Bandeira, Jesper V Olsen, Jesper V Mann, Matthias Mann, Pavel A Pevzner | Bioinformatics (Oxford, England) | 2008-09-12 |
| Toll-like receptors in skin infections and inflammatory diseases. | Yuping Lai, Richard L Gallo | Infectious Disorders Drug Targets | 2008-09-11 |
| Vaccine therapy for P. acnes-associated diseases. | Teruaki Nakatsuji, Lada Rasochova, Chun-Ming Huang | Infectious Disorders Drug Targets | 2008-09-11 |
| S-Adenosyl-L-methionine hydrolase (adenosine-forming), a conserved bacterial and archaeal protein related to SAM-dependent halogenases. | Alessandra S Eustáquio, Johannes Härle, Joseph P Noel, Bradley S Moore | Chembiochem : A European Journal Of Chemical Biology | 2008-08-23 |
| The deep-sea bacterium Photobacterium profundum SS9 utilizes separate flagellar systems for swimming and swarming under high-pressure conditions. | Emiley A Eloe, Federico M Lauro, Rudi F Vogel, Douglas H Bartlett | Applied And Environmental Microbiology | 2008-08-22 |
| Viridamides A and B, lipodepsipeptides with antiprotozoal activity from the marine cyanobacterium Oscillatoria nigro-viridis. | T Luke Simmons, Niclas Engene, Luis David Ureña, Luz I Romero, Eduardo Ortega-Barría, Lena Gerwick, William H Gerwick | Journal Of Natural Products | 2008-08-21 |
| Spectral dictionaries: Integrating de novo peptide sequencing with database search of tandem mass spectra. | Sangtae Kim, Nitin Gupta, Nuno Bandeira, Pavel A Pevzner | Molecular & Cellular Proteomics : MCP | 2008-08-14 |
| Herpes simplex virus 2 serostatus and viral loads of HIV-1 in blood and semen as risk factors for HIV transmission among men who have sex with men. | David M Butler, Davey M Smith, Edward R Cachay, George K Hightower, Charles Thomas Nugent, Douglas D Richman, Susan J Little | AIDS (London, England) | 2008-08-02 |
| Hepatitis C virus-induced oxidative stress suppresses hepcidin expression through increased histone deacetylase activity. | Kouichi Miura, Kojiro Taura, Yuzo Kodama, Bernd Schnabl, David A Brenner | Hepatology (Baltimore, Md.) | 2008-08-02 |
| Probing the compatibility of type II ketosynthase-carrier protein partners. | Andrew S Worthington, Gene H Hur, Jordan L Meier, Qian Cheng, Bradley S Moore, Michael D Burkart | Chembiochem : A European Journal Of Chemical Biology | 2008-07-31 |
| Metabolic gene regulation in a dynamically changing environment. | Matthew R Bennett, Wyming Lee Pang, Natalie A Ostroff, Bridget L Baumgartner, Sujata Nayak, Lev S Tsimring, Jeff Hasty | Nature | 2008-07-30 |
| Streptococcus iniae M-like protein contributes to virulence in fish and is a target for live attenuated vaccine development. | Jeffrey B Locke, Ramy K Aziz, Mike R Vicknair, Victor Nizet, John T Buchanan | PloS One | 2008-07-30 |
| Bioengineering a humanized acne microenvironment model: proteomics analysis of host responses to Propionibacterium acnes infection in vivo. | Teruaki Nakatsuji, Yang Shi, Wenhong Zhu, Cheng-Po Huang, Yun-Ru Chen, Dong-Youn Lee, Jeffery W Smith, Christos C Zouboulis, Richard L Gallo, Chun-Ming Huang | Proteomics | 2008-07-25 |
| An N-acyl homolog of mycothiol is produced in marine actinomycetes. | Gerald L Newton, Paul R Jensen, John B Macmillan, William Fenical, Robert C Fahey | Archives Of Microbiology | 2008-07-16 |
| Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases. | Sangtae Kim, Nitin Gupta, Pavel A Pevzner | Journal Of Proteome Research | 2008-07-03 |
| Forging new ties between E. coli genes. | Trey Ideker | Cell | 2008-07-01 |
| Phosphorylation-specific MS/MS scoring for rapid and accurate phosphoproteome analysis. | Samuel H Payne, Margaret Yau, Marcus B Smolka, Stephen Tanner, Huilin Zhou, Vineet Bafna | Journal Of Proteome Research | 2008-06-19 |
| Ensemble-based virtual screening reveals potential novel antiviral compounds for avian influenza neuraminidase. | Lily S Cheng, Rommie E Amaro, Dong Xu, Wilfred W Li, Peter W Arzberger, J Andrew McCammon | Journal Of Medicinal Chemistry | 2008-06-18 |
| Group B streptococcal beta-hemolysin/cytolysin directly impairs cardiomyocyte viability and function. | Mary E Hensler, Shigeki Miyamoto, Victor Nizet | PloS One | 2008-06-18 |
| The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli. | Adam M Feist, Bernhard Ø Palsson | Nature Biotechnology | 2008-06-10 |
| Point mutation in the group B streptococcal pbp2x gene conferring decreased susceptibility to beta-lactam antibiotics. | Samira Dahesh, Mary E Hensler, Nina M Van Sorge, Robert E Gertz, Stephanie Schrag, Victor Nizet, Bernard W Beall | Antimicrobial Agents And Chemotherapy | 2008-06-09 |
| Engineered biosynthesis of antiprotealide and other unnatural salinosporamide proteasome inhibitors. | Ryan P McGlinchey, Markus Nett, Alessandra S Eustáquio, Ratnakar N Asolkar, William Fenical, Bradley S Moore | Journal Of The American Chemical Society | 2008-05-31 |
| A NOD2-NALP1 complex mediates caspase-1-dependent IL-1beta secretion in response to Bacillus anthracis infection and muramyl dipeptide. | Li-Chung Hsu, Syed R Ali, Shauna McGillivray, Ping-Hui Tseng, Sanjeev Mariathasan, Eric W Humke, Lars Eckmann, Jonathan J Powell, Victor Nizet, Vishva M Dixit, Michael Karin | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2008-05-29 |
| An assessment of actinobacterial diversity in the marine environment. | Paul R Jensen, Federico M Lauro | Antonie Van Leeuwenhoek | 2008-05-24 |
| The type III secretion chaperone SycE promotes a localized disorder-to-order transition in the natively unfolded effector YopE. | Loren Rodgers, Alicia Gamez, Roland Riek, Partho Ghosh | The Journal Of Biological Chemistry | 2008-05-23 |
| Pimecrolimus enhances TLR2/6-induced expression of antimicrobial peptides in keratinocytes. | Amanda S Büchau, Jürgen Schauber, Thomas Hultsch, Anton Stuetz, Richard L Gallo | The Journal Of Investigative Dermatology | 2008-05-22 |
| Mast cell cathelicidin antimicrobial peptide prevents invasive group A Streptococcus infection of the skin. | Anna Di Nardo, Kenshi Yamasaki, Robert A Dorschner, Yuping Lai, Richard L Gallo | Journal Of Immunology (Baltimore, Md. : 1950) | 2008-05-21 |
| The Ashwell receptor mitigates the lethal coagulopathy of sepsis. | Prabhjit K Grewal, Satoshi Uchiyama, David Ditto, Nissi Varki, Dzung T Le, Victor Nizet, Jamey D Marth | Nature Medicine | 2008-05-18 |
| Impact of individual mutations on increased fitness in adaptively evolved strains of Escherichia coli. | M Kenyon Applebee, Markus J Herrgård, Bernhard Ø Palsson | Journal Of Bacteriology | 2008-05-16 |
| Context-specific metabolic networks are consistent with experiments. | Scott A Becker, Bernhard O Palsson | PLoS Computational Biology | 2008-05-16 |
| Antibodies elicited by inactivated propionibacterium acnes-based vaccines exert protective immunity and attenuate the IL-8 production in human sebocytes: relevance to therapy for acne vulgaris. | Teruaki Nakatsuji, Yu-Tsueng Liu, Cheng-Po Huang, Christos C Zoubouis, Richard L Gallo, Chun-Ming Huang | The Journal Of Investigative Dermatology | 2008-05-08 |
| NF-kappaB links innate immunity to the hypoxic response through transcriptional regulation of HIF-1alpha. | Jordi Rius, Monica Guma, Christian Schachtrup, Katerina Akassoglou, Annelies S Zinkernagel, Victor Nizet, Randall S Johnson, Gabriel G Haddad, Michael Karin | Nature | 2008-04-23 |
| Comparison of algorithms that interpret genotypic HIV-1 drug resistance to determine the prevalence of transmitted drug resistance. | Lin Liu, Susanne May, Douglas D Richman, Frederick M Hecht, Martin Markowitz, Eric S Daar, Jean-Pierre Routy, Joseph B Margolick, Ann C Collier, Christopher H Woelk, Susan J Little, Davey M Smith | AIDS (London, England) | 2008-04-23 |
| Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes. | Nitin Gupta, Jamal Benhamida, Vipul Bhargava, Daniel Goodman, Elisabeth Kain, Ian Kerman, Ngan Nguyen, Noah Ollikainen, Jesse Rodriguez, Jian Wang, Mary S Lipton, Margaret Romine, Vineet Bafna, Richard D Smith, Pavel A Pevzner | Genome Research | 2008-04-21 |
| Mutasynthesis of fluorosalinosporamide, a potent and reversible inhibitor of the proteasome. | Alessandra S Eustáquio, Bradley S Moore | Angewandte Chemie (International Ed. In English) | 2008-04-15 |
| A multidimensional chromatography technology for in-depth phosphoproteome analysis. | Claudio P Albuquerque, Marcus B Smolka, Samuel H Payne, Vineet Bafna, Jimmy Eng, Huilin Zhou | Molecular & Cellular Proteomics : MCP | 2008-04-11 |
| Protein networks in disease. | Trey Ideker, Roded Sharan | Genome Research | 2008-04-03 |
| Human leptospirosis caused by a new, antigenically unique Leptospira associated with a Rattus species reservoir in the Peruvian Amazon. | Michael A Matthias, Jessica N Ricaldi, Manuel Cespedes, M Monica Diaz, Renee L Galloway, Mayuko Saito, Arnold G Steigerwalt, Kailash P Patra, Carlos Vidal Ore, Eduardo Gotuzzo, Robert H Gilman, Paul N Levett, Joseph M Vinetz | PLoS Neglected Tropical Diseases | 2008-04-02 |
| Discovery of a widely distributed toxin biosynthetic gene cluster. | Shaun W Lee, Douglas A Mitchell, Andrew L Markley, Mary E Hensler, David Gonzalez, Aaron Wohlrab, Pieter C Dorrestein, Victor Nizet, Jack E Dixon | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2008-03-28 |
| Persistence of transmitted drug resistance among subjects with primary human immunodeficiency virus infection. | Susan J Little, Simon D W Frost, Joseph K Wong, Davey M Smith, Sergei L Kosakovsky Pond, Caroline C Ignacio, Neil T Parkin, Christos J Petropoulos, Douglas D Richman | Journal Of Virology | 2008-03-19 |
| An age-dependent association of mannose-binding lectin-2 genetic variants on HIV-1-related disease in children. | Kumud K Singh, Alexis Lieser, Ping K Ruan, Terry Fenton, Stephen A Spector | The Journal Of Allergy And Clinical Immunology | 2008-03-17 |
| Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts. | Byung-Kwan Cho, Eric M Knight, Christian L Barrett, Bernhard Ø Palsson | Genome Research | 2008-03-13 |
| Biosynthesis and structures of cyclomarins and cyclomarazines, prenylated cyclic peptides of marine actinobacterial origin. | Andrew W Schultz, Dong-Chan Oh, John R Carney, R Thomas Williamson, Daniel W Udwary, Paul R Jensen, Steven J Gould, William Fenical, Bradley S Moore | Journal Of The American Chemical Society | 2008-03-11 |
| Coiled-coil irregularities and instabilities in group A Streptococcus M1 are required for virulence. | Case McNamara, Annelies S Zinkernagel, Pauline Macheboeuf, Madeleine W Cunningham, Victor Nizet, Partho Ghosh | Science (New York, N.Y.) | 2008-03-08 |
| Strain-associated virulence factors of Streptococcus iniae in hybrid-striped bass. | John T Buchanan, Kelly M Colvin, Mike R Vicknair, Silpa K Patel, Anjuli M Timmer, Victor Nizet | Veterinary Microbiology | 2008-03-07 |
| Salinipyrones and pacificanones, mixed-precursor polyketides from the marine actinomycete Salinispora pacifica. | Dong-Chan Oh, Erin A Gontang, Christopher A Kauffman, Paul R Jensen, William Fenical | Journal Of Natural Products | 2008-03-06 |
| Visualizing the spatial distribution of secondary metabolites produced by marine cyanobacteria and sponges via MALDI-TOF imaging. | Eduardo Esquenazi, Cameron Coates, Luke Simmons, David Gonzalez, William H Gerwick, Pieter C Dorrestein | Molecular BioSystems | 2008-03-06 |
| Critical role of HIF-1alpha in keratinocyte defense against bacterial infection. | Carole Peyssonnaux, Adam T Boutin, Annelies S Zinkernagel, Vivekanand Datta, Victor Nizet, Randall S Johnson | The Journal Of Investigative Dermatology | 2008-03-06 |
| Undiagnosed respiratory viruses in children. | John C Arnold, Kumud K Singh, Stephen A Spector, Mark H Sawyer | Pediatrics | 2008-03-04 |
| Impairments in fine-motor coordination and speed of information processing predict declines in everyday functioning in hepatitis C infection. | Ofilio Vigil, Carolina Posada, Steven Paul Woods, J Hampton Atkinson, Robert K Heaton, William Perry, Tarek I Hassanein, Igor Grant, Scott L Letendre, | Journal Of Clinical And Experimental Neuropsychology | 2008-03-04 |
| A peptide with a ProGln C terminus in the human saliva peptidome exerts bactericidal activity against Propionibacterium acnes. | Chun-Ming Huang, Justin W Torpey, Yu-Tseung Liu, Yun-Ru Chen, Katherine E Williams, Elizabeth A Komives, Richard L Gallo | Antimicrobial Agents And Chemotherapy | 2008-02-19 |
| Vaccination targeting a surface sialidase of P. acnes: implication for new treatment of acne vulgaris. | Teruaki Nakatsuji, Yu-Tsueng Liu, Cheng-Po Huang, Christos C Zouboulis, Richard L Gallo, Chun-Ming Huang | PloS One | 2008-02-06 |
| Biosynthetic origin of natural products isolated from marine microorganism-invertebrate assemblages. | T Luke Simmons, R Cameron Coates, Benjamin R Clark, Niclas Engene, David Gonzalez, Eduardo Esquenazi, Pieter C Dorrestein, William H Gerwick | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2008-02-04 |
| Identification of Salmonella SPI-2 secretion system components required for SpvB-mediated cytotoxicity in macrophages and virulence in mice. | Sara H Browne, Patricia Hasegawa, Sharon Okamoto, Joshua Fierer, Donald G Guiney | FEMS Immunology And Medical Microbiology | 2008-01-31 |
| Unraveling the biosynthesis of the sporolide cyclohexenone building block. | Ryan P McGlinchey, Markus Nett, Bradley S Moore | Journal Of The American Chemical Society | 2008-01-31 |
| The marinopyrroles, antibiotics of an unprecedented structure class from a marine Streptomyces sp. | Chambers C Hughes, Alejandra Prieto-Davo, Paul R Jensen, William Fenical | Organic Letters | 2008-01-19 |
| alpha 2-6-Linked sialic acids on N-glycans modulate carcinoma differentiation in vivo. | Maria Hedlund, Elisa Ng, Ajit Varki, Nissi M Varki | Cancer Research | 2008-01-18 |
| Herpes simplex virus type 2 acquisition during recent HIV infection does not influence plasma HIV levels. | Edward R Cachay, Simon D W Frost, Art F Y Poon, David Looney, Sherry M Rostami, Mary E Pacold, Douglas D Richman, Susan J Little, Davey M Smith | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2008-01-17 |
| A group B streptococcal pilus protein promotes phagocyte resistance and systemic virulence. | Heather C Maisey, Darin Quach, Mary E Hensler, George Y Liu, Richard L Gallo, Victor Nizet, Kelly S Doran | FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology | 2008-01-15 |
| The phagosomal nutrient transporter (Pht) family. | Derek E Chen, Sheila Podell, John-Demian Sauer, Michele S Swanson, Milton H Saier | Microbiology (Reading, England) | 2008-01-05 |
| Pharmacologic augmentation of hypoxia-inducible factor-1alpha with mimosine boosts the bactericidal capacity of phagocytes. | Annelies S Zinkernagel, Carole Peyssonnaux, Randall S Johnson, Victor Nizet | The Journal Of Infectious Diseases | 2008-01-05 |
| Multi-level analysis of organic anion transporters 1, 3, and 6 reveals major differences in structural determinants of antiviral discrimination. | David M Truong, Gregory Kaler, Akash Khandelwal, Peter W Swaan, Sanjay K Nigam | The Journal Of Biological Chemistry | 2008-01-03 |
| Large-scale transposon mutagenesis of Photobacterium profundum SS9 reveals new genetic loci important for growth at low temperature and high pressure. | Federico M Lauro, Khiem Tran, Alessandro Vezzi, Nicola Vitulo, Giorgio Valle, Douglas H Bartlett | Journal Of Bacteriology | 2007-12-21 |
| Antimicrobial peptides in human skin disease. | Kenshi Yamasaki, Richard L Gallo | European Journal Of Dermatology : EJD | 2007-12-18 |
| Discovery and characterization of a marine bacterial SAM-dependent chlorinase. | Alessandra S Eustáquio, Florence Pojer, Joseph P Noel, Bradley S Moore | Nature Chemical Biology | 2007-12-02 |
| Selective ligand recognition by a diversity-generating retroelement variable protein. | Jason L Miller, Johanne Le Coq, Asher Hodes, Roman Barbalat, Jeff F Miller, Partho Ghosh | PLoS Biology | 2007-11-23 |
| Innate immunity and antimicrobial defense systems in psoriasis. | Amanda S Büchau, Richard L Gallo | Clinics In Dermatology | 2007-11-21 |
| Hypoxia inducible factor (HIF) function in innate immunity and infection. | Annelies S Zinkernagel, Randall S Johnson, Victor Nizet | Journal Of Molecular Medicine (Berlin, Germany) | 2007-11-21 |
| Staphylococcus aureus: a blemish on skin immunity. | Annelies S Zinkernagel, Victor Nizet | Cell Host & Microbe | 2007-11-17 |
| Cell-specific SpoIIIE assembly and DNA translocation polarity are dictated by chromosome orientation. | Eric C Becker, Kit Pogliano | Molecular Microbiology | 2007-11-16 |
| Top-down mass spectrometry on low-resolution instruments: characterization of phosphopantetheinylated carrier domains in polyketide and non-ribosomal biosynthetic pathways. | Dario Meluzzi, Wei Hao Zheng, Mary Hensler, Victor Nizet, Pieter C Dorrestein | Bioorganic & Medicinal Chemistry Letters | 2007-11-01 |
| Ni uptake and limitation in marine Synechococcus strains. | Christopher L Dupont, Katherine Barbeau, Brian Palenik | Applied And Environmental Microbiology | 2007-10-19 |
| Histone acetylation in keratinocytes enables control of the expression of cathelicidin and CD14 by 1,25-dihydroxyvitamin D3. | Jürgen Schauber, Yuko Oda, Amanda S Büchau, Qian-Chun Yun, Andreas Steinmeyer, Ulrich Zügel, Daniel D Bikle, Richard L Gallo | The Journal Of Investigative Dermatology | 2007-10-18 |
| Marmycins A and B, cytotoxic pentacyclic C-glycosides from a marine sediment-derived actinomycete related to the genus Streptomyces. | Glenroy D A Martin, Lik T Tan, Paul R Jensen, Rosalba Encarnacion Dimayuga, Craig R Fairchild, Carmen Raventos-Suarez, William Fenical | Journal Of Natural Products | 2007-09-11 |
| Polymerase chain reaction detection of Plasmodium vivax and Plasmodium falciparum DNA from stored serum samples: implications for retrospective diagnosis of malaria. | Ajay R Bharti, Kailash P Patra, Raul Chuquiyauri, Margaret Kosek, Robert H Gilman, Alejandro Llanos-Cuentas, Joseph M Vinetz | The American Journal Of Tropical Medicine And Hygiene | 2007-09-11 |
| Dual localization pathways for the engulfment proteins during Bacillus subtilis sporulation. | Stefan Aung, Jonathan Shum, Angelica Abanes-De Mello, Dan H Broder, Jennifer Fredlund-Gutierrez, Shinobu Chiba, Kit Pogliano | Molecular Microbiology | 2007-09-11 |
| Streptococcus iniae beta-hemolysin streptolysin S is a virulence factor in fish infection. | Jeffrey B Locke, Kelly M Colvin, Nissi Varki, Mike R Vicknair, Victor Nizet, John T Buchanan | Diseases Of Aquatic Organisms | 2007-08-28 |
| Microbial regulatory and metabolic networks. | Byung-Kwan Cho, Pep Charusanti, Markus J Herrgård, Bernhard O Palsson | Current Opinion In Biotechnology | 2007-08-24 |
| Metabolic reconstruction and modeling of nitrogen fixation in Rhizobium etli. | Osbaldo Resendis-Antonio, Jennifer L Reed, Sergio Encarnación, Julio Collado-Vides, Bernhard Ø Palsson | PLoS Computational Biology | 2007-08-17 |
| An evaluation of Comparative Genome Sequencing (CGS) by comparing two previously-sequenced bacterial genomes. | Christopher D Herring, Bernhard Ø Palsson | BMC Genomics | 2007-08-14 |
| CAMP factor is not essential for systemic virulence of Group B Streptococcus. | Mary E Hensler, Darin Quach, Chia-Jun Hsieh, Kelly S Doran, Victor Nizet | Microbial Pathogenesis | 2007-08-14 |
| Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation. | Nitin Gupta, Stephen Tanner, Navdeep Jaitly, Joshua N Adkins, Mary Lipton, Robert Edwards, Margaret Romine, Andrei Osterman, Vineet Bafna, Richard D Smith, Pavel A Pevzner | Genome Research | 2007-08-09 |
| A synthetic gene network for tuning protein degradation in Saccharomyces cerevisiae. | Chris Grilly, Jesse Stricker, Wyming Lee Pang, Matthew R Bennett, Jeff Hasty | Molecular Systems Biology | 2007-07-31 |
| How group A Streptococcus circumvents host phagocyte defenses. | Laura A Kwinn, Victor Nizet | Future Microbiology | 2007-07-31 |
| NeuA sialic acid O-acetylesterase activity modulates O-acetylation of capsular polysaccharide in group B Streptococcus. | Amanda L Lewis, Hongzhi Cao, Silpa K Patel, Sandra Diaz, Wesley Ryan, Aaron F Carlin, Vireak Thon, Warren G Lewis, Ajit Varki, Xi Chen, Victor Nizet | The Journal Of Biological Chemistry | 2007-07-23 |
| Diversity in cell surface sialic acid presentations: implications for biology and disease. | Nissi M Varki, Ajit Varki | Laboratory Investigation; A Journal Of Technical Methods And Pathology | 2007-07-16 |
| Lucentamycins A-D, cytotoxic peptides from the marine-derived actinomycete Nocardiopsis lucentensis. | Ji Young Cho, Philip G Williams, Hak Chol Kwon, Paul R Jensen, William Fenical | Journal Of Natural Products | 2007-07-14 |
| Antimicrobial peptides: natural effectors of the innate immune system. | Katherine Radek, Richard Gallo | Seminars In Immunopathology | 2007-07-12 |
| A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. | Adam M Feist, Christopher S Henry, Jennifer L Reed, Markus Krummenacker, Andrew R Joyce, Peter D Karp, Linda J Broadbelt, Vassily Hatzimanikatis, Bernhard Ø Palsson | Molecular Systems Biology | 2007-06-26 |
| Long-term persistence of transmitted HIV drug resistance in male genital tract secretions: implications for secondary transmission. | Davey M Smith, Joseph K Wong, Hai Shao, George K Hightower, Stephanie H T Mai, Joseph M Moreno, Caroline C Ignacio, Simon D W Frost, Douglas D Richman, Susan J Little | The Journal Of Infectious Diseases | 2007-06-19 |
| Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data. | You-Kwan Oh, Bernhard O Palsson, Sung M Park, Christophe H Schilling, Radhakrishnan Mahadevan | The Journal Of Biological Chemistry | 2007-06-15 |
| Pathogenesis of hepatitis C virus coinfection in the brains of patients infected with HIV. | Scott Letendre, Amy D Paulino, Edward Rockenstein, Anthony Adame, Leslie Crews, Mariana Cherner, Robert Heaton, Ronald Ellis, Ian P Everall, Igor Grant, Eliezer Masliah, | The Journal Of Infectious Diseases | 2007-06-15 |
| Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica. | Daniel W Udwary, Lisa Zeigler, Ratnakar N Asolkar, Vasanth Singan, Alla Lapidus, William Fenical, Paul R Jensen, Bradley S Moore | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2007-06-11 |
| Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets. | Neema Jamshidi, Bernhard Ø Palsson | BMC Systems Biology | 2007-06-08 |
| Cutting edge: Essential role of hypoxia inducible factor-1alpha in development of lipopolysaccharide-induced sepsis. | Carole Peyssonnaux, Pilar Cejudo-Martin, Andrew Doedens, Annelies S Zinkernagel, Randall S Johnson, Victor Nizet | Journal Of Immunology (Baltimore, Md. : 1950) | 2007-06-06 |
| Remarkable loop flexibility in avian influenza N1 and its implications for antiviral drug design. | Rommie E Amaro, David D L Minh, Lily S Cheng, William M Lindstrom, Arthur J Olson, Jung-Hsin Lin, Wilfred W Li, J Andrew McCammon | Journal Of The American Chemical Society | 2007-06-01 |
| Antibiotic stewardship in pediatrics: a necessity. | John S Bradley | The Pediatric Infectious Disease Journal | 2007-05-29 |
| Metabolic characterization of Escherichia coli strains adapted to growth on lactate. | Qiang Hua, Andrew R Joyce, Bernhard Ø Palsson, Stephen S Fong | Applied And Environmental Microbiology | 2007-05-18 |
| HIV suppression by HAART preserves cognitive function in advanced, immune-reconstituted AIDS patients. | J Allen McCutchan, Julia W Wu, Kevin Robertson, Susan L Koletar, Ronald J Ellis, Susan Cohn, Michael Taylor, Steven Woods, Robert Heaton, Judith Currier, Paige L Williams | AIDS (London, England) | 2007-05-16 |
| Neuropathologic confirmation of definitional criteria for human immunodeficiency virus-associated neurocognitive disorders. | Mariana Cherner, Lucette Cysique, Robert K Heaton, Thomas D Marcotte, Ronald J Ellis, Eliezer Masliah, Igor Grant, | Journal Of Neurovirology | 2007-04-25 |
| The impact of neuropsychological functioning and depressed mood on functional complaints in HIV-1 infection and methamphetamine dependence. | Joseph R Sadek, Ofilio Vigil, Igor Grant, Robert K Heaton, | Journal Of Clinical And Experimental Neuropsychology | 2007-04-25 |
| Understanding how leading bacterial pathogens subvert innate immunity to reveal novel therapeutic targets. | Victor Nizet | The Journal Of Allergy And Clinical Immunology | 2007-04-23 |
| Phylogenetic diversity of gram-positive bacteria cultured from marine sediments. | Erin A Gontang, William Fenical, Paul R Jensen | Applied And Environmental Microbiology | 2007-03-30 |
| Molecular basis for chloronium-mediated meroterpene cyclization: cloning, sequencing, and heterologous expression of the napyradiomycin biosynthetic gene cluster. | Jaclyn M Winter, Michelle C Moffitt, Emmanuel Zazopoulos, James B McAlpine, Pieter C Dorrestein, Bradley S Moore | The Journal Of Biological Chemistry | 2007-03-28 |
| Secondary metabolite chemistry of the marine-derived fungus Massarina sp., strain CNT-016. | Mohamed A Abdel-Wahab, Ratnakar N Asolkar, Patrik Inderbitzin, William Fenical | Phytochemistry | 2007-03-21 |
| Thalassospiramides A and B, immunosuppressive peptides from the marine bacterium Thalassospira sp. | Dong-Chan Oh, Wendy K Strangman, Christopher A Kauffman, Paul R Jensen, William Fenical | Organic Letters | 2007-03-21 |
| Human immunodeficiency virus type 1 subtype C Tat fails to induce intracellular calcium flux and induces reduced tumor necrosis factor production from monocytes. | Grant R Campbell, Jennifer D Watkins, Kumud K Singh, Erwann P Loret, Stephen A Spector | Journal Of Virology | 2007-03-21 |
| Herpes simplex virus type 2 infection does not influence viral dynamics during early HIV-1 infection. | Edward R Cachay, Simon D W Frost, Douglas D Richman, Davey M Smith, Susan J Little | The Journal Of Infectious Diseases | 2007-03-15 |
| Deficiencies of myeloid differentiation factor 88, Toll-like receptor 2 (TLR2), or TLR4 produce specific defects in macrophage cytokine secretion induced by Helicobacter pylori. | Marygorret Obonyo, Mojgan Sabet, Sheri P Cole, Joerg Ebmeyer, Satoshi Uematsu, Shizuo Akira, Donald G Guiney | Infection And Immunity | 2007-03-12 |
| Antiviral gene expression in rheumatoid arthritis: role of IKKepsilon and interferon regulatory factor 3. | Susan E Sweeney, Ling Mo, Gary S Firestein | Arthritis And Rheumatism | 2007-03-01 |
| Induced production of emericellamides A and B from the marine-derived fungus Emericella sp. in competing co-culture. | Dong-Chan Oh, Christopher A Kauffman, Paul R Jensen, William Fenical | Journal Of Natural Products | 2007-02-27 |
| Injury enhances TLR2 function and antimicrobial peptide expression through a vitamin D-dependent mechanism. | Jürgen Schauber, Robert A Dorschner, Alvin B Coda, Amanda S Büchau, Philip T Liu, David Kiken, Yolanda R Helfrich, Sewon Kang, Hashem Z Elalieh, Andreas Steinmeyer, Ulrich Zügel, Daniel D Bikle, Robert L Modlin, Richard L Gallo | The Journal Of Clinical Investigation | 2007-02-08 |
| Correcting base-assignment errors in repeat regions of shotgun assembly. | Degui Zhi, Uri Keich, Pavel Pevzner, Steffen Heber, Haixu Tang | IEEE/ACM Transactions On Computational Biology And Bioinformatics | 2007-02-06 |
| Arenicolides A-C, 26-membered ring macrolides from the marine actinomycete Salinispora arenicola. | Philip G Williams, Eric D Miller, Ratnakar N Asolkar, Paul R Jensen, William Fenical | The Journal Of Organic Chemistry | 2007-02-01 |
| Saliniketals A and B, bicyclic polyketides from the marine actinomycete Salinispora arenicola. | Philip G Williams, Ratnakar N Asolkar, Tamara Kondratyuk, John M Pezzuto, Paul R Jensen, William Fenical | Journal Of Natural Products | 2007-01-27 |
| Discovery of two cyanobacterial phenylalanine ammonia lyases: kinetic and structural characterization. | Michelle C Moffitt, Gordon V Louie, Marianne E Bowman, Janelle Pence, Joseph P Noel, Bradley S Moore | Biochemistry | 2007-01-24 |
| Evolution of carbohydrate antigens--microbial forces shaping host glycomes? | Joseph R Bishop, Pascal Gagneux | Glycobiology | 2007-01-19 |
| Prokaryotic lifestyles in deep sea habitats. | Federico M Lauro, Douglas H Bartlett | Extremophiles : Life Under Extreme Conditions | 2007-01-17 |
| Piperazimycins: cytotoxic hexadepsipeptides from a marine-derived bacterium of the genus Streptomyces. | Eric D Miller, Christopher A Kauffman, Paul R Jensen, William Fenical | The Journal Of Organic Chemistry | 2007-01-16 |
| Transcriptional regulation of protein complexes within and across species. | Kai Tan, Tomer Shlomi, Hoda Feizi, Trey Ideker, Roded Sharan | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2007-01-16 |
| Shewanella psychrophila sp. nov. and Shewanella piezotolerans sp. nov., isolated from west Pacific deep-sea sediment. | Xiang Xiao, Peng Wang, Xiang Zeng, Douglas Hoyt Bartlett, Fengping Wang | International Journal Of Systematic And Evolutionary Microbiology | 2007-01-16 |
| Impairment of innate immune killing mechanisms by bacteriostatic antibiotics. | Sascha A Kristian, Anjuli M Timmer, George Y Liu, Xavier Lauth, Neta Sal-Man, Yosef Rosenfeld, Yechiel Shai, Richard L Gallo, Victor Nizet | FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology | 2007-01-10 |
| Meeting practical challenges of a trial involving a multitude of treatment regimens: an example of a multi-center randomized controlled clinical trial in neuroAIDS. | Susanne May, Scott Letendre, Richard Haubrich, J Allen McCutchan, Robert Heaton, Edmund Capparelli, Ronald Ellis | Journal Of Neuroimmune Pharmacology : The Official Journal Of The Society On NeuroImmune Pharmacology | 2007-01-10 |
| The role of cohort studies in drug development: clinical evidence of antiviral activity of serotonin reuptake inhibitors and HMG-CoA reductase inhibitors in the central nervous system. | Scott L Letendre, Jennifer Marquie-Beck, Ronald J Ellis, Steven Paul Woods, Brookie Best, David B Clifford, Ann C Collier, Benjamin B Gelman, Christina Marra, Justin C McArthur, J Allen McCutchan, Susan Morgello, David Simpson, Terry J Alexander, Janis Durelle, Robert Heaton, Igor Grant, | Journal Of Neuroimmune Pharmacology : The Official Journal Of The Society On NeuroImmune Pharmacology | 2007-01-03 |
| Daryamides A-C, weakly cytotoxic polyketides from a marine-derived actinomycete of the genus Streptomyces strain CNQ-085. | Ratnakar N Asolkar, Paul R Jensen, Christopher A Kauffman, William Fenical | Journal Of Natural Products | 2006-12-28 |
| Clinical utility of HIV standard genotyping among antiretroviral-naive individuals with unknown duration of infection. | Davey Smith, Niousha Moini, Rick Pesano, Edward Cachay, Heidi Aiem, Yolanda Lie, Douglas Richman, Susan Little | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2006-12-28 |
| Species-specific secondary metabolite production in marine actinomycetes of the genus Salinispora. | Paul R Jensen, Philip G Williams, Dong-Chan Oh, Lisa Zeigler, William Fenical | Applied And Environmental Microbiology | 2006-12-08 |
| The unique 16S rRNA genes of piezophiles reflect both phylogeny and adaptation. | Federico M Lauro, Roger A Chastain, Lesley E Blankenship, A Aristides Yayanos, Douglas H Bartlett | Applied And Environmental Microbiology | 2006-12-08 |
| Bohemamines from a marine-derived Streptomyces sp. | Tim S Bugni, Matthew Woolery, Christopher A Kauffman, Paul R Jensen, William Fenical | Journal Of Natural Products | 2006-11-28 |
| Dynamics of single-cell gene expression. | Diane Longo, Jeff Hasty | Molecular Systems Biology | 2006-11-28 |
| Impact of membrane fusion and proteolysis on SpoIIQ dynamics and interaction with SpoIIIAH. | Shinobu Chiba, Kristina Coleman, Kit Pogliano | The Journal Of Biological Chemistry | 2006-11-22 |
| Developing a new resource for drug discovery: marine actinomycete bacteria. | William Fenical, Paul R Jensen | Nature Chemical Biology | 2006-11-17 |
| Genetic characterization and virulence role of the RALP3/LSA locus upstream of the streptolysin s operon in invasive M1T1 Group A Streptococcus. | Laura A Kwinn, Arya Khosravi, Ramy K Aziz, Anjuli M Timmer, Kelly S Doran, Malak Kotb, Victor Nizet | Journal Of Bacteriology | 2006-11-17 |
| Discovering regulated networks during HIV-1 latency and reactivation. | Sourav Bandyopadhyay, Ryan Kelley, Trey Ideker | Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing | 2006-11-11 |
| Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry. | Christopher L Dupont, Song Yang, Brian Palenik, Philip E Bourne | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2006-11-10 |
| Streptococcus iniae capsule impairs phagocytic clearance and contributes to virulence in fish. | Jeffrey B Locke, Kelly M Colvin, Anup K Datta, Silpa K Patel, Nandita N Naidu, Melody N Neely, Victor Nizet, John T Buchanan | Journal Of Bacteriology | 2006-11-10 |
| Systems approach to refining genome annotation. | Jennifer L Reed, Trina R Patel, Keri H Chen, Andrew R Joyce, Margaret K Applebee, Christopher D Herring, Olivia T Bui, Eric M Knight, Stephen S Fong, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2006-11-06 |
| Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale. | Christopher D Herring, Anu Raghunathan, Christiane Honisch, Trina Patel, M Kenyon Applebee, Andrew R Joyce, Thomas J Albert, Frederick R Blattner, Dirk van den Boom, Charles R Cantor, Bernhard Ø Palsson | Nature Genetics | 2006-11-05 |
| Activin and glucocorticoids synergistically activate follicle-stimulating hormone beta-subunit gene expression in the immortalized LbetaT2 gonadotrope cell line. | Shauna M McGillivray, Varykina G Thackray, Djurdjica Coss, Pamela L Mellon | Endocrinology | 2006-11-02 |
| Community-associated methicillin-resistant Staphylococcus aureus necrotizing fasciitis in a neonate. | Walter Dehority, Emily Wang, Patty S Vernon, Carla Lee, Francoise Perdreau-Remington, John Bradley | The Pediatric Infectious Disease Journal | 2006-10-31 |
| Brain abscess caused by Streptococcus pyogenes in a previously healthy child. | Walter Dehority, Satoshi Uchiyama, Arya Khosravi, Victor Nizet | Journal Of Clinical Microbiology | 2006-10-25 |
| Polymeric immunoglobulin receptor in intestinal immune defense against the lumen-dwelling protozoan parasite Giardia. | Barbara J Davids, J E Daniel Palm, Michael P Housley, Jennifer R Smith, Yolanda S Andersen, Martin G Martin, Barbara A Hendrickson, Finn-Eirik Johansen, Staffan G Svärd, Frances D Gillin, Lars Eckmann | Journal Of Immunology (Baltimore, Md. : 1950) | 2006-10-24 |
| Neurobehavioral effects of HIV-1 infection in China and the United States: a pilot study. | Lucette A Cysique, Hua Jin, Donald R Franklin, Erin E Morgan, Chuan Shi, Xin Yu, Zunyou Wu, Michael J Taylor, Thomas D Marcotte, Scott Letendre, Christopher Ake, Igor Grant, Robert K Heaton, | Journal Of The International Neuropsychological Society : JINS | 2006-10-23 |
| Group B streptococcal pilus proteins contribute to adherence to and invasion of brain microvascular endothelial cells. | Heather C Maisey, Mary Hensler, Victor Nizet, Kelly S Doran | Journal Of Bacteriology | 2006-10-13 |
| Biogeography of the marine actinomycete Salinispora. | Paul R Jensen, Chrisy Mafnas | Environmental Microbiology | 2006-10-04 |
| Experimental and computational assessment of conditionally essential genes in Escherichia coli. | Andrew R Joyce, Jennifer L Reed, Aprilfawn White, Robert Edwards, Andrei Osterman, Tomoya Baba, Hirotada Mori, Scott A Lesely, Bernhard Ø Palsson, Sanjay Agarwalla | Journal Of Bacteriology | 2006-09-29 |
| Group B streptococcal capsular sialic acids interact with siglecs (immunoglobulin-like lectins) on human leukocytes. | Aaron F Carlin, Amanda L Lewis, Ajit Varki, Victor Nizet | Journal Of Bacteriology | 2006-09-22 |
| Nothing in glycobiology makes sense, except in the light of evolution. | Ajit Varki | Cell | 2006-09-09 |
| Lack of neutralizing antibody response to HIV-1 predisposes to superinfection. | Davey M Smith, Matthew C Strain, Simon D W Frost, Satish K Pillai, Joseph K Wong, Terri Wrin, Yang Liu, Christos J Petropolous, Eric S Daar, Susan J Little, Douglas D Richman | Virology | 2006-09-07 |
| Serum opacity factor promotes group A streptococcal epithelial cell invasion and virulence. | Anjuli M Timmer, Sascha A Kristian, Vivekanand Datta, Arthur Jeng, Christine M Gillen, Mark J Walker, Bernard Beall, Victor Nizet | Molecular Microbiology | 2006-08-30 |
| Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment. | Brian Palenik, Qinghu Ren, Chris L Dupont, Garry S Myers, John F Heidelberg, Jonathan H Badger, Ramana Madupu, William C Nelson, Lauren M Brinkac, Robert J Dodson, A Scott Durkin, Sean C Daugherty, Stephen A Sullivan, Hoda Khouri, Yasmin Mohamoud, Rebecca Halpin, Ian T Paulsen | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2006-08-25 |
| Control of the innate epithelial antimicrobial response is cell-type specific and dependent on relevant microenvironmental stimuli. | Jürgen Schauber, Robert A Dorschner, Kenshi Yamasaki, Brook Brouha, Richard L Gallo | Immunology | 2006-08-10 |
| Bile acid-induced secretion in polarized monolayers of T84 colonic epithelial cells: Structure-activity relationships. | Stephen J Keely, Michael M Scharl, Lone S Bertelsen, Lee R Hagey, Kim E Barrett, Alan F Hofmann | American Journal Of Physiology. Gastrointestinal And Liver Physiology | 2006-08-10 |
| Pyrrolidine bis-cyclic guanidines with antimicrobial activity against drug-resistant Gram-positive pathogens identified from a mixture-based combinatorial library. | Mary E Hensler, Gregory Bernstein, Victor Nizet, Adel Nefzi | Bioorganic & Medicinal Chemistry Letters | 2006-08-04 |
| Evidence for interleukin-1-independent stimulation of interleukin-12 and down-regulation by interleukin-10 in Helicobacter pylori-infected murine dendritic cells deficient in the interleukin-1 receptor. | Marygorret Obonyo, Sheri P Cole, Sandip K Datta, Donald G Guiney | FEMS Immunology And Medical Microbiology | 2006-07-29 |
| Transcriptional regulation of the fad regulon genes of Escherichia coli by ArcA. | Byung-Kwan Cho, Eric M Knight, Bernhard Ø Palsson | Microbiology (Reading, England) | 2006-07-20 |
| Epithelial cell I kappa B-kinase beta has an important protective role in Clostridium difficile toxin A-induced mucosal injury. | Sungwon Chae, Lars Eckmann, Yukiko Miyamoto, Charalabos Pothoulakis, Michael Karin, Martin F Kagnoff | Journal Of Immunology (Baltimore, Md. : 1950) | 2006-07-05 |
| Metabolic analysis of adaptive evolution for in silico-designed lactate-producing strains. | Qiang Hua, Andrew R Joyce, Stephen S Fong, Bernhard Ø Palsson | Biotechnology And Bioengineering | 2006-06-30 |
| Human bocavirus: prevalence and clinical spectrum at a children's hospital. | John C Arnold, Kumud K Singh, Stephen A Spector, Mark H Sawyer | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2006-06-19 |
| Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae. | Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Gary C Hon, Chad L Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga G Troyanskya, Trey Ideker, Kara Dolinski, Nizar N Batada, Mike Tyers | Journal Of Biology | 2006-06-08 |
| Azamerone, a terpenoid phthalazinone from a marine-derived bacterium related to the genus Streptomyces (Actinomycetales). | Ji Young Cho, Hak Cheol Kwon, Philip G Williams, Paul R Jensen, William Fenical | Organic Letters | 2006-06-02 |
| Genetic attributes of cerebrospinal fluid-derived HIV-1 env. | Satish K Pillai, Sergei L Kosakovsky Pond, Yang Liu, Benjamin M Good, Matthew C Strain, Ronald J Ellis, Scott Letendre, Davey M Smith, Huldrych F Günthard, Igor Grant, Thomas D Marcotte, J Allen McCutchan, Douglas D Richman, Joseph K Wong | Brain : A Journal Of Neurology | 2006-05-30 |
| A systems approach to mapping DNA damage response pathways. | Christopher T Workman, H Craig Mak, Scott McCuine, Jean-Bosco Tagne, Maya Agarwal, Owen Ozier, Thomas J Begley, Leona D Samson, Trey Ideker | Science (New York, N.Y.) | 2006-05-20 |
| Determinants of CD4+ T cell recovery during suppressive antiretroviral therapy: association of immune activation, T cell maturation markers, and cellular HIV-1 DNA. | Miguel Goicoechea, Davey M Smith, Lin Liu, Susanne May, Allan R Tenorio, Caroline C Ignacio, Alan Landay, Richard Haubrich | The Journal Of Infectious Diseases | 2006-05-18 |
| Identification of genome-scale metabolic network models using experimentally measured flux profiles. | Markus J Herrgård, Stephen S Fong, Bernhard Ø Palsson | PLoS Computational Biology | 2006-05-10 |
| Gene transcript changes in individual rainbow trout livers following an inflammatory stimulus. | Lena Gerwick, Graham Corley-Smith, Christopher J Bayne | Fish & Shellfish Immunology | 2006-04-28 |
| Work-related abilities in schizophrenia and HIV infection. | Elizabeth W Twamley, Jenille M Narvaez, Joseph R Sadek, Dilip V Jeste, Igor Grant, Robert K Heaton | The Journal Of Nervous And Mental Disease | 2006-04-15 |
| Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae. | Markus J Herrgård, Baek-Seok Lee, Vasiliy Portnoy, Bernhard Ø Palsson | Genome Research | 2006-04-10 |
| Actinofuranones A and B, polyketides from a marine-derived bacterium related to the genus streptomyces (actinomycetales). | Ji Young Cho, Hak Cheol Kwon, Philip G Williams, Christopher A Kauffman, Paul R Jensen, William Fenical | Journal Of Natural Products | 2006-03-28 |
| Expression and potential function of cathelicidin antimicrobial peptides in dermatophytosis and tinea versicolor. | Belén López-García, Phillip H A Lee, Richard L Gallo | The Journal Of Antimicrobial Chemotherapy | 2006-03-23 |
| Cortical and subcortical neurodegeneration is associated with HIV neurocognitive impairment. | David J Moore, Eliezer Masliah, Julie D Rippeth, Raul Gonzalez, Catherine L Carey, Mariana Cherner, Ronald J Ellis, Cristian L Achim, Thomas D Marcotte, Robert K Heaton, Igor Grant, | AIDS (London, England) | 2006-03-22 |
| Forespore engulfment mediated by a ratchet-like mechanism. | Dan H Broder, Kit Pogliano | Cell | 2006-03-17 |
| Candidate states of Helicobacter pylori's genome-scale metabolic network upon application of "loop law" thermodynamic constraints. | Nathan D Price, Ines Thiele, Bernhard Ø Palsson | Biophysical Journal | 2006-03-13 |
| Cyanosporasides A and B, chloro- and cyano-cyclopenta[a]indene glycosides from the marine actinomycete "Salinispora pacifica". | Dong-Chan Oh, Philip G Williams, Christopher A Kauffman, Paul R Jensen, William Fenical | Organic Letters | 2006-03-10 |
| Metabolite coupling in genome-scale metabolic networks. | Scott A Becker, Nathan D Price, Bernhard Ø Palsson | BMC Bioinformatics | 2006-03-06 |
| Systematic identification of functional orthologs based on protein network comparison. | Sourav Bandyopadhyay, Roded Sharan, Trey Ideker | Genome Research | 2006-03-03 |
| Tropolactones A-D, four meroterpenoids from a marine-derived fungus of the genus Aspergillus. | Mercedes Cueto, John B MacMillan, Paul R Jensen, William Fenical | Phytochemistry | 2006-02-28 |
| The group B streptococcal sialic acid O-acetyltransferase is encoded by neuD, a conserved component of bacterial sialic acid biosynthetic gene clusters. | Amanda L Lewis, Mary E Hensler, Ajit Varki, Victor Nizet | The Journal Of Biological Chemistry | 2006-02-20 |
| Incident major depression does not affect neuropsychological functioning in HIV-infected men. | Lucette A Cysique, Reena Deutsch, J Hampton Atkinson, Corinna Young, Thomas D Marcotte, Lauren Dawson, Igor Grant, Robert K Heaton, | Journal Of The International Neuropsychological Society : JINS | 2006-02-15 |
| PCR-based tandem epitope tagging system for Escherichia coli genome engineering. | Byung-Kwan Cho, Eric M Knight, Bernhard O Palsson | BioTechniques | 2006-02-04 |
| Antimicrobial peptide resistance mechanisms of human bacterial pathogens. | Victor Nizet | Current Issues In Molecular Biology | 2006-02-03 |
| Marinomycins A-D, antitumor-antibiotics of a new structure class from a marine actinomycete of the recently discovered genus "marinispora". | Hak Cheol Kwon, Christopher A Kauffman, Paul R Jensen, William Fenical | Journal Of The American Chemical Society | 2006-02-02 |
| Evidence that the SpoIIIE DNA translocase participates in membrane fusion during cytokinesis and engulfment. | Nai-Jia Linda Liu, Rachel J Dutton, Kit Pogliano | Molecular Microbiology | 2006-01-25 |
| Suppression of engulfment defects in bacillus subtilis by elevated expression of the motility regulon. | Ana R Perez, Angelica Abanes-De Mello, Kit Pogliano | Journal Of Bacteriology | 2006-01-24 |
| Toll-like receptor 4 protects against lethal Leptospira interrogans serovar icterohaemorrhagiae infection and contributes to in vivo control of leptospiral burden. | Suganya Viriyakosol, Michael A Matthias, Mark A Swancutt, Theo N Kirkland, Joseph M Vinetz | Infection And Immunity | 2006-01-24 |
| The mammalian ionic environment dictates microbial susceptibility to antimicrobial defense peptides. | Robert A Dorschner, Belen Lopez-Garcia, Andreas Peschel, Dirk Kraus, Kazuya Morikawa, Victor Nizet, Richard L Gallo | FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology | 2006-01-06 |
| TLR4-dependent hepcidin expression by myeloid cells in response to bacterial pathogens. | Carole Peyssonnaux, Annelies S Zinkernagel, Vivekanand Datta, Xavier Lauth, Randall S Johnson, Victor Nizet | Blood | 2006-01-03 |
| Origins of extrinsic variability in eukaryotic gene expression. | Dmitri Volfson, Jennifer Marciniak, William J Blake, Natalie Ostroff, Lev S Tsimring, Jeff Hasty | Nature | 2005-12-21 |
| Microbiology. Chitin, cholera, and competence. | Douglas H Bartlett, Farooq Azam | Science (New York, N.Y.) | 2005-12-17 |
| The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states. | Christian L Barrett, Christopher D Herring, Jennifer L Reed, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2005-12-15 |
| Trophic regulation of Vibrio cholerae in coastal marine waters. | Alexandra Z Worden, Michael Seidel, Steven Smriga, Arne Wick, Francesca Malfatti, Douglas Bartlett, Farooq Azam | Environmental Microbiology | 2005-12-14 |
| Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection. | Simon D W Frost, Terri Wrin, Davey M Smith, Sergei L Kosakovsky Pond, Yang Liu, Ellen Paxinos, Colombe Chappey, Justin Galovich, Jeff Beauchaine, Christos J Petropoulos, Susan J Little, Douglas D Richman | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2005-12-09 |
| Monitoring dynamics of single-cell gene expression over multiple cell cycles. | Scott Cookson, Natalie Ostroff, Wyming Lee Pang, Dmitri Volfson, Jeff Hasty | Molecular Systems Biology | 2005-11-22 |
| Association of CD4+ T-lymphocyte counts and new thymic emigrants in HIV-infected children during successful highly active antiretroviral therapy. | Akihiko Saitoh, Kumud K Singh, Sharsti Sandall, Christine A Powell, Terrence Fenton, Courtney V Fletcher, Karen Hsia, Stephen A Spector | The Journal Of Allergy And Clinical Immunology | 2005-11-21 |
| DNase expression allows the pathogen group A Streptococcus to escape killing in neutrophil extracellular traps. | John T Buchanan, Amelia J Simpson, Ramy K Aziz, George Y Liu, Sascha A Kristian, Malak Kotb, James Feramisco, Victor Nizet | Current Biology : CB | 2005-11-14 |
| Inferring functional information from domain co-evolution. | Yohan Kim, Mehmet Koyutürk, Umut Topkara, Ananth Grama, Shankar Subramaniam | Bioinformatics (Oxford, England) | 2005-11-13 |
| Adenovirus, adeno-associated virus and Kawasaki disease. | Hiroko Shike, Chisato Shimizu, John T Kanegaye, Jennifer L Foley, David P Schnurr, Lauren J Wold, Jane C Burns | The Pediatric Infectious Disease Journal | 2005-11-12 |
| Diversity of bat-associated Leptospira in the Peruvian Amazon inferred by bayesian phylogenetic analysis of 16S ribosomal DNA sequences. | Michael A Matthias, M Mónica Díaz, Kalina J Campos, Maritza Calderon, Michael R Willig, Victor Pacheco, Eduardo Gotuzzo, Robert H Gilman, Joseph M Vinetz | The American Journal Of Tropical Medicine And Hygiene | 2005-11-12 |
| Culture-dependent and culture-independent diversity within the obligate marine actinomycete genus Salinispora. | Tracy J Mincer, William Fenical, Paul R Jensen | Applied And Environmental Microbiology | 2005-11-05 |
| The effects of hepatitis C, HIV, and methamphetamine dependence on neuropsychological performance: biological correlates of disease. | Scott L Letendre, Mariana Cherner, Ronald J Ellis, Jennifer Marquie-Beck, Bryan Gragg, Thomas Marcotte, Robert K Heaton, J Allen McCutchan, Igor Grant, | AIDS (London, England) | 2005-10-28 |
| Human coronavirus NL63 is not detected in the respiratory tracts of children with acute Kawasaki disease. | Chisato Shimizu, Hiroko Shike, Susan C Baker, Francesca Garcia, Lia van der Hoek, Taco W Kuijpers, Sharon L Reed, Anne H Rowley, Stanford T Shulman, Helen K B Talbot, John V Williams, Jane C Burns | The Journal Of Infectious Diseases | 2005-10-17 |
| Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states. | Stephen S Fong, Andrew R Joyce, Bernhard Ø Palsson | Genome Research | 2005-10-06 |
| Construct validity of Hopkins Verbal Learning Test-Revised component process measures in an HIV-1 sample. | Steven Paul Woods, J Cobb Scott, Matthew S Dawson, Erin E Morgan, Catherine L Carey, Robert K Heaton, Igor Grant, | Archives Of Clinical Neuropsychology : The Official Journal Of The National Academy Of Neuropsychologists | 2005-09-29 |
| Keratinocyte production of cathelicidin provides direct activity against bacterial skin pathogens. | Marissa H Braff, Mohamed Zaiou, Joshua Fierer, Victor Nizet, Richard L Gallo | Infection And Immunity | 2005-09-24 |
| Streptococcus iniae phosphoglucomutase is a virulence factor and a target for vaccine development. | John T Buchanan, Jason A Stannard, Xavier Lauth, Vaughn E Ostland, Henry C Powell, Mark E Westerman, Victor Nizet | Infection And Immunity | 2005-09-24 |
| NF-kappaB: linking inflammation and immunity to cancer development and progression. | Michael Karin, Florian R Greten | Nature Reviews. Immunology | 2005-09-22 |
| The C-type lectin fold as an evolutionary solution for massive sequence variation. | Stephen A McMahon, Jason L Miller, Jeffrey A Lawton, Donald E Kerkow, Asher Hodes, Marc A Marti-Renom, Sergei Doulatov, Eswar Narayanan, Andrej Sali, Jeff F Miller, Partho Ghosh | Nature Structural & Molecular Biology | 2005-09-18 |
| D-alanylation of teichoic acids promotes group a streptococcus antimicrobial peptide resistance, neutrophil survival, and epithelial cell invasion. | Sascha A Kristian, Vivekanand Datta, Christopher Weidenmaier, Rita Kansal, Iris Fedtke, Andreas Peschel, Richard L Gallo, Victor Nizet | Journal Of Bacteriology | 2005-09-17 |
| Salinispora arenicola gen. nov., sp. nov. and Salinispora tropica sp. nov., obligate marine actinomycetes belonging to the family Micromonosporaceae. | Luis A Maldonado, William Fenical, Paul R Jensen, Christopher A Kauffman, Tracy J Mincer, Alan C Ward, Alan T Bull, Michael Goodfellow | International Journal Of Systematic And Evolutionary Microbiology | 2005-09-17 |
| Engulfment-regulated proteolysis of SpoIIQ: evidence that dual checkpoints control sigma activity. | Xin Jiang, Aileen Rubio, Shinobu Chiba, Kit Pogliano | Molecular Microbiology | 2005-09-17 |
| Conformational flexibility in the multidrug efflux system protein AcrA. | Jonathan Mikolosko, Kostyantyn Bobyk, Helen I Zgurskaya, Partho Ghosh | Structure (London, England : 1993) | 2005-08-28 |
| Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays. | Christopher D Herring, Marni Raffaelle, Timothy E Allen, Elenita I Kanin, Robert Landick, Aseem Z Ansari, Bernhard Ø Palsson | Journal Of Bacteriology | 2005-08-20 |
| Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double-deletion mutants. | Ines Thiele, Thuy D Vo, Nathan D Price, Bernhard Ø Palsson | Journal Of Bacteriology | 2005-08-04 |
| New cytotoxic salinosporamides from the marine Actinomycete Salinispora tropica. | Philip G Williams, Greg O Buchanan, Robert H Feling, Christopher A Kauffman, Paul R Jensen, William Fenical | The Journal Of Organic Chemistry | 2005-07-30 |
| HIV drug resistance acquired through superinfection. | Davey M Smith, Joseph K Wong, George K Hightower, Caroline C Ignacio, Kersten K Koelsch, Christos J Petropoulos, Douglas D Richman, Susan J Little | AIDS (London, England) | 2005-07-30 |
| Identification of a bacterial type III effector family with G protein mimicry functions. | Neal M Alto, Feng Shao, Cheri S Lazar, Renee L Brost, Gordon Chua, Seema Mattoo, Stephen A McMahon, Partho Ghosh, Timothy R Hughes, Charles Boone, Jack E Dixon | Cell | 2005-07-22 |
| Staphylococcus aureus golden pigment impairs neutrophil killing and promotes virulence through its antioxidant activity. | George Y Liu, Anthony Essex, John T Buchanan, Vivekanand Datta, Hal M Hoffman, John F Bastian, Joshua Fierer, Victor Nizet | The Journal Of Experimental Medicine | 2005-07-11 |
| Localization of translocation complex components in Bacillus subtilis: enrichment of the signal recognition particle receptor at early sporulation septa. | Aileen Rubio, Xin Jiang, Kit Pogliano | Journal Of Bacteriology | 2005-07-05 |
| Anti-fungal activity of cathelicidins and their potential role in Candida albicans skin infection. | Belén López-García, Phillip H A Lee, Kenshi Yamasaki, Richard L Gallo | The Journal Of Investigative Dermatology | 2005-06-29 |
| In silico design and adaptive evolution of Escherichia coli for production of lactic acid. | Stephen S Fong, Anthony P Burgard, Christopher D Herring, Eric M Knight, Frederick R Blattner, Costas D Maranas, Bernhard O Palsson | Biotechnology And Bioengineering | 2005-06-18 |
| Sporolides A and B: structurally unprecedented halogenated macrolides from the marine actinomycete Salinispora tropica. | Greg O Buchanan, Philip G Williams, Robert H Feling, Christopher A Kauffman, Paul R Jensen, William Fenical | Organic Letters | 2005-06-17 |
| Assessment of multiple displacement amplification for polymorphism discovery and haplotype determination at a highly polymorphic locus, MC1R. | Kenton K Murthy, Vafa S Mahboubi, Alicia Santiago, Mandy T Barragan, Ralph Knöll, Heinz-Peter Schultheiss, Daniel T O'Connor, Nicholas J Schork, Brinda K Rana | Human Mutation | 2005-06-16 |
| Culturable marine actinomycete diversity from tropical Pacific Ocean sediments. | Paul R Jensen, Erin Gontang, Chrisy Mafnas, Tracy J Mincer, William Fenical | Environmental Microbiology | 2005-06-11 |
| Untangling the web of functional and physical interactions in yeast. | Markus J Herrgård, Bernhard Ø Palsson | Journal Of Biology | 2005-06-08 |
| Signaling pathways and genes that inhibit pathogen-induced macrophage apoptosis--CREB and NF-kappaB as key regulators. | Jin Mo Park, Florian R Greten, Athena Wong, Randal J Westrick, J Simon C Arthur, Kinya Otsu, Alexander Hoffmann, Marc Montminy, Michael Karin | Immunity | 2005-06-07 |
| Systematic interpretation of genetic interactions using protein networks. | Ryan Kelley, Trey Ideker | Nature Biotechnology | 2005-05-07 |
| Genetic polymorphisms in CX3CR1 predict HIV-1 disease progression in children independently of CD4+ lymphocyte count and HIV-1 RNA load. | Kumud K Singh, Michael D Hughes, Jie Chen, Stephen A Spector | The Journal Of Infectious Diseases | 2005-04-28 |
| The Plasmodium protein network diverges from those of other eukaryotes. | Silpa Suthram, Taylor Sittler, Trey Ideker | Nature | 2005-04-22 |
| A glimpse into the expanded genome content of Vibrio cholerae through identification of genes present in environmental strains. | Alexandra Purdy, Forest Rohwer, Rob Edwards, Farooq Azam, Douglas H Bartlett | Journal Of Bacteriology | 2005-04-20 |
| Mutational analysis of the group A streptococcal operon encoding streptolysin S and its virulence role in invasive infection. | Vivekanand Datta, Sandra M Myskowski, Laura A Kwinn, Daniel N Chiem, Nissi Varki, Rita G Kansal, Malak Kotb, Victor Nizet | Molecular Microbiology | 2005-04-12 |
| Cathelicidin mediates innate intestinal defense against colonization with epithelial adherent bacterial pathogens. | Mitsutoshi Iimura, Richard L Gallo, Koji Hase, Yukiko Miyamoto, Lars Eckmann, Martin F Kagnoff | Journal Of Immunology (Baltimore, Md. : 1950) | 2005-04-09 |
| Libertellenones A-D: induction of cytotoxic diterpenoid biosynthesis by marine microbial competition. | Dong-Chan Oh, Paul R Jensen, Christopher A Kauffman, William Fenical | Bioorganic & Medicinal Chemistry | 2005-04-01 |
| Structure-function relationships among human cathelicidin peptides: dissociation of antimicrobial properties from host immunostimulatory activities. | Marissa H Braff, Mi'i A Hawkins, Anna Di Nardo, Belen Lopez-Garcia, Michael D Howell, Cathy Wong, Kenneth Lin, Joanne E Streib, Robert Dorschner, Donald Y M Leung, Richard L Gallo | Journal Of Immunology (Baltimore, Md. : 1950) | 2005-03-22 |
| Epithelial dysfunction associated with the development of colitis in conventionally housed mdr1a-/- mice. | Silvia Resta-Lenert, Jane Smitham, Kim E Barrett | American Journal Of Physiology. Gastrointestinal And Liver Physiology | 2005-03-17 |
| Antimicrobial peptides. | Arash Izadpanah, Richard L Gallo | Journal Of The American Academy Of Dermatology | 2005-03-12 |
| Virulence role of group B Streptococcus beta-hemolysin/cytolysin in a neonatal rabbit model of early-onset pulmonary infection. | Mary E Hensler, George Y Liu, Susan Sobczak, Kurt Benirschke, Victor Nizet, Gregory P Heldt | The Journal Of Infectious Diseases | 2005-03-10 |
| An MDR1-3435 variant is associated with higher plasma nelfinavir levels and more rapid virologic response in HIV-1 infected children. | Akihiko Saitoh, Kumud K Singh, Christine A Powell, Terrence Fenton, Courtney V Fletcher, Richard Brundage, Stuart Starr, Stephen A Spector | AIDS (London, England) | 2005-03-08 |
| Prediction of neurologic sequelae in childhood tuberculous meningitis: a review of 20 cases and proposal of a novel scoring system. | Akihiko Saitoh, Alice Pong, Norman J Waecker, John A D Leake, Mark P Nespeca, John S Bradley | The Pediatric Infectious Disease Journal | 2005-03-08 |
| Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation. | Scott A Becker, Bernhard Ø Palsson | BMC Microbiology | 2005-03-07 |
| Expression of an additional cathelicidin antimicrobial peptide protects against bacterial skin infection. | Phillip H A Lee, Takaaki Ohtake, Mohamed Zaiou, Masamoto Murakami, Jennifer A Rudisill, Kenneth H Lin, Richard L Gallo | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2005-02-22 |
| Codon volatility does not reflect selective pressure on the HIV-1 genome. | Satish K Pillai, Sergei L Kosakovsky Pond, Christopher H Woelk, Douglas D Richman, Davey M Smith | Virology | 2005-02-11 |
| Nod2 mutation in Crohn's disease potentiates NF-kappaB activity and IL-1beta processing. | Shin Maeda, Li-Chung Hsu, Hongjun Liu, Laurie A Bankston, Mitsutoshi Iimura, Martin F Kagnoff, Lars Eckmann, Michael Karin | Science (New York, N.Y.) | 2005-02-05 |
| Keratinocytes store the antimicrobial peptide cathelicidin in lamellar bodies. | Marissa H Braff, Anna Di Nardo, Richard L Gallo | The Journal Of Investigative Dermatology | 2005-01-29 |
| Quantitation of adenovirus genome during acute infection in normal children. | Hiroko Shike, Chisato Shimizu, John Kanegaye, Jennifer L Foley, Jane C Burns | The Pediatric Infectious Disease Journal | 2005-01-25 |
| Semen-specific genetic characteristics of human immunodeficiency virus type 1 env. | Satish K Pillai, Benjamin Good, Sergei Kosakovsky Pond, Joseph K Wong, Matt C Strain, Douglas D Richman, Davey M Smith | Journal Of Virology | 2005-01-15 |
| A role for CagA/VacA in Helicobacter pylori inhibition of murine duodenal mucosal bicarbonate secretion. | Bi-Guang Tuo, Zachary M Sellers, Anders J Smith, Kim E Barrett, Jon I Isenberg, Hui Dong | Digestive Diseases And Sciences | 2005-01-05 |
| k-Cone analysis: determining all candidate values for kinetic parameters on a network scale. | Iman Famili, Radhakrishnan Mahadevan, Bernhard O Palsson | Biophysical Journal | 2004-12-30 |
| Anthrolysin O and other gram-positive cytolysins are toll-like receptor 4 agonists. | Jin Mo Park, Vincent H Ng, Shin Maeda, Richard F Rest, Michael Karin | The Journal Of Experimental Medicine | 2004-12-22 |
| Activation of liver X receptors and retinoid X receptors prevents bacterial-induced macrophage apoptosis. | Annabel F Valledor, Li-Chung Hsu, Sumito Ogawa, Dominique Sawka-Verhelle, Michael Karin, Christopher K Glass | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2004-12-15 |
| Process of protein transport by the type III secretion system. | Partho Ghosh | Microbiology And Molecular Biology Reviews : MMBR | 2004-12-14 |
| Zipper-like interaction between proteins in adjacent daughter cells mediates protein localization. | Bill Blaylock, Xin Jiang, Aileen Rubio, Charles P Moran, Kit Pogliano | Genes & Development | 2004-12-03 |
| Bass hepcidin synthesis, solution structure, antimicrobial activities and synergism, and in vivo hepatic response to bacterial infections. | Xavier Lauth, Jeffrey J Babon, Jason A Stannard, Satendra Singh, Victor Nizet, James M Carlberg, Vaughn E Ostland, Michael W Pennington, Raymond S Norton, Mark E Westerman | The Journal Of Biological Chemistry | 2004-11-16 |
| HIF-1alpha expression regulates the bactericidal capacity of phagocytes. | Carole Peyssonnaux, Vivekanand Datta, Thorsten Cramer, Andrew Doedens, Emmanuel A Theodorakis, Richard L Gallo, Nancy Hurtado-Ziola, Victor Nizet, Randall S Johnson | The Journal Of Clinical Investigation | 2004-11-09 |
| Expression and secretion of cathelicidin antimicrobial peptides in murine mammary glands and human milk. | Masamoto Murakami, Robert A Dorschner, Lauren J Stern, Kenneth H Lin, Richard L Gallo | Pediatric Research | 2004-11-05 |
| Retrograde amnesia in dementia: comparison of HIV-associated dementia, Alzheimer's disease, and Huntington's disease. | Joseph R Sadek, Shannon A Johnson, Desirée A White, David P Salmon, Kirsten I Taylor, Jody H Delapena, Jane S Paulsen, Robert K Heaton, Igor Grant | Neuropsychology | 2004-10-28 |
| IKKalpha limits macrophage NF-kappaB activation and contributes to the resolution of inflammation. | Toby Lawrence, Magali Bebien, George Y Liu, Victor Nizet, Michael Karin | Nature | 2004-10-15 |
| Molecular pathogenesis of neonatal group B streptococcal infection: no longer in its infancy. | Kelly S Doran, Victor Nizet | Molecular Microbiology | 2004-10-02 |
| Metabolic gene-deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes. | Stephen S Fong, Bernhard Ø Palsson | Nature Genetics | 2004-09-26 |
| Phylogenetic analyses and diterpenoid production by marine bacteria of the genus Saprospira. | Tracy J Mincer, Allan Spyere, Paul R Jensen, William Fenical | Current Microbiology | 2004-09-24 |
| Sword and shield: linked group B streptococcal beta-hemolysin/cytolysin and carotenoid pigment function to subvert host phagocyte defense. | George Y Liu, Kelly S Doran, Toby Lawrence, Nicole Turkson, Manuela Puliti, Luciana Tissi, Victor Nizet | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2004-09-20 |
| Integrated analysis of metabolic phenotypes in Saccharomyces cerevisiae. | Natalie C Duarte, Bernhard Ø Palsson, Pengcheng Fu | BMC Genomics | 2004-09-08 |
| Enhancing antiretroviral therapy for human immunodeficiency virus cognitive disorders. | Scott L Letendre, J Allen McCutchan, Meredith E Childers, Steven P Woods, Deborah Lazzaretto, Robert K Heaton, Igor Grant, Ronald J Ellis, | Annals Of Neurology | 2004-09-07 |
| Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states. | Jennifer L Reed, Bernhard Ø Palsson | Genome Research | 2004-09-03 |
| Isolation and structure assignments of rostratins A-D, cytotoxic disulfides produced by the marine-derived fungus Exserohilum rostratum. | Ren Xiang Tan, Paul R Jensen, Philip G Williams, William Fenical | Journal Of Natural Products | 2004-08-31 |
| CCR2 polymorphisms affect neuropsychological impairment in HIV-1-infected adults. | Kumud K Singh, Ronald J Ellis, Jennifer Marquie-Beck, Scott Letendre, Robert K Heaton, Igor Grant, Stephen A Spector | Journal Of Neuroimmunology | 2004-08-30 |
| Comparison of network-based pathway analysis methods. | Jason A Papin, Joerg Stelling, Nathan D Price, Steffen Klamt, Stefan Schuster, Bernhard O Palsson | Trends In Biotechnology | 2004-07-31 |
| Discovery and characterization of sialic acid O-acetylation in group B Streptococcus. | Amanda L Lewis, Victor Nizet, Ajit Varki | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2004-07-19 |
| The prostate as a reservoir for HIV-1. | Davey M Smith, Julie D Kingery, Joseph K Wong, Caroline C Ignacio, Douglas D Richman, Susan J Little | AIDS (London, England) | 2004-07-09 |
| Novel slc22 transporter homologs in fly, worm, and human clarify the phylogeny of organic anion and cation transporters. | Satish A Eraly, Julio C Monte, Sanjay K Nigam | Physiological Genomics | 2004-06-17 |
| Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. | Natalie C Duarte, Markus J Herrgård, Bernhard Ø Palsson | Genome Research | 2004-06-14 |
| Flagellar biosynthesis in silico: building quantitative models of regulatory networks. | Markus J Herrgård, Bernhard Ø Palsson | Cell | 2004-06-10 |
| Marine actinomycete diversity and natural product discovery. | Paul R Jensen, Tracy J Mincer, Philip G Williams, William Fenical | Antonie Van Leeuwenhoek | 2004-06-07 |
| Synthesis and structure-activity relationships of the halovirs, antiviral natural products from a marine-derived fungus. | David C Rowley, Sara Kelly, Paul Jensen, William Fenical | Bioorganic & Medicinal Chemistry | 2004-05-27 |
| Clearance of Citrobacter rodentium requires B cells but not secretory immunoglobulin A (IgA) or IgM antibodies. | Christian Maaser, Michael P Housley, Mitsutoshi Iimura, Jennifer R Smith, Bruce A Vallance, B Brett Finlay, John R Schreiber, Nissi M Varki, Martin F Kagnoff, Lars Eckmann | Infection And Immunity | 2004-05-25 |
| Probiotics and commensals reverse TNF-alpha- and IFN-gamma-induced dysfunction in human intestinal epithelial cells. | Silvia Resta-Lenert, Kim E Barrett | Gastroenterology | 2004-05-02 |
| Extracellular virulence factors of group B Streptococci. | George Yen-Hsi Liu, Victor Nizet | Frontiers In Bioscience : A Journal And Virtual Library | 2004-05-01 |
| In Silico Metabolic Model and Protein Expression of Haemophilus influenzae Strain Rd KW20 in Rich Medium. | Anu Raghunathan, Nathan D Price, Michael Y Galperin, Kira S Makarova, Samuel Purvine, Alex F Picone, Tim Cherny, Tao Xie, Thomas J Reilly, Robert Munson, Ryan E Tyler, Brian J Akerley, Arnold L Smith, Bernhard O Palsson, Eugene Kolker | Omics : A Journal Of Integrative Biology | 2004-04-27 |
| Reconstruction of microbial transcriptional regulatory networks. | Markus J Herrgård, Markus W Covert, Bernhard Ø Palsson | Current Opinion In Biotechnology | 2004-04-23 |
| Using metabolic flux data to further constrain the metabolic solution space and predict internal flux patterns: the Escherichia coli spectrum. | Sharon J Wiback, Radhakrishnan Mahadevan, Bernhard Ø Palsson | Biotechnology And Bioengineering | 2004-04-15 |
| Effects of HIV-1 infection and aging on neurobehavioral functioning: preliminary findings. | Marianna Cherner, Ronald J Ellis, Deborah Lazzaretto, Corinna Young, Monica Rivera Mindt, J Hampton Atkinson, Igor Grant, Robert K Heaton, | AIDS (London, England) | 2004-04-13 |
| GW domains of the Listeria monocytogenes invasion protein InlB are required for potentiation of Met activation. | Manidipa Banerjee, Jeremy Copp, Danka Vuga, Michael Marino, Tara Chapman, Peter van der Geer, Partho Ghosh | Molecular Microbiology | 2004-03-31 |
| Septal localization of forespore membrane proteins during engulfment in Bacillus subtilis. | Aileen Rubio, Kit Pogliano | The EMBO Journal | 2004-03-25 |
| Correlation of in vivo neuroimaging abnormalities with postmortem human immunodeficiency virus encephalitis and dendritic loss. | Sarah L Archibald, Eliezer Masliah, Christine Fennema-Notestine, Thomas D Marcotte, Ronald J Ellis, J Allen McCutchan, Robert K Heaton, Igor Grant, Margaret Mallory, Aida Miller, Terry L Jernigan | Archives Of Neurology | 2004-03-17 |
| Innate immune defense of the nail unit by antimicrobial peptides. | Robert A Dorschner, Belen Lopez-Garcia, Jennifer Massie, Choll Kim, Richard L Gallo | Journal Of The American Academy Of Dermatology | 2004-02-28 |
| Postsecretory processing generates multiple cathelicidins for enhanced topical antimicrobial defense. | Masamoto Murakami, Belen Lopez-Garcia, Marissa Braff, Robert A Dorschner, Richard L Gallo | Journal Of Immunology (Baltimore, Md. : 1950) | 2004-02-24 |
| The chimpanzee model: contributions and considerations for studies of hepatitis B virus. | Pascal Gagneux, Elaine A Muchmore | Methods In Molecular Medicine | 2004-02-06 |
| Characterization of the calcium-binding sites of Listeria monocytogenes InlB. | Michael Marino, Manidipa Banerjee, Jeremy Copp, Shaynoor Dramsi, Tara Chapman, Peter van der Geer, Pascale Cossart, Partho Ghosh | Biochemical And Biophysical Research Communications | 2004-02-04 |
| Lack of protective effects of interleukin-4 -589-C/T polymorphism against HIV-1-related disease progression and central nervous system impairment, in children. | Kumud K Singh, Michael D Hughes, Jie Chen, Stephen A Spector | The Journal Of Infectious Diseases | 2004-01-29 |
| Expression of LL-37 by human gastric epithelial cells as a potential host defense mechanism against Helicobacter pylori. | Koji Hase, Masamoto Murakami, Mitsutoshi Iimura, Sheri P Cole, Yoshimune Horibe, Takaaki Ohtake, Marygorret Obonyo, Richard L Gallo, Lars Eckmann, Martin F Kagnoff | Gastroenterology | 2004-01-16 |
| Base rate of Hiscock Digit Memory Test failure in HIV-associated neurocognitive disorders. | Steven Paul Woods, Emily Conover, Michael Weinborn, Julie D Rippeth, R Michelle Brill, Robert K Heaton, Igor Grant, | The Clinical Neuropsychologist | 2004-01-06 |
| The protein kinase PKR is required for macrophage apoptosis after activation of Toll-like receptor 4. | Li-Chung Hsu, Jin Mo Park, Kezhong Zhang, Jun-Li Luo, Shin Maeda, Randal J Kaufman, Lars Eckmann, Donald G Guiney, Michael Karin | Nature | 2003-12-12 |
| Chromosome segregation in Eubacteria. | Kit Pogliano, Joe Pogliano, Eric Becker | Current Opinion In Microbiology | 2003-12-10 |
| Leptospirosis: a zoonotic disease of global importance. | Ajay R Bharti, Jarlath E Nally, Jessica N Ricaldi, Michael A Matthias, Monica M Diaz, Michael A Lovett, Paul N Levett, Robert H Gilman, Michael R Willig, Eduardo Gotuzzo, Joseph M Vinetz, | The Lancet. Infectious Diseases | 2003-12-04 |
| How can we battle the scourge of diarrhea? 2003 McKenna Memorial Lecture. | Kim E Barrett | Canadian Journal Of Gastroenterology = Journal Canadien De Gastroenterologie | 2003-11-25 |
| Integrating high-throughput and computational data elucidates bacterial networks. | Markus W Covert, Eric M Knight, Jennifer L Reed, Markus J Herrgard, Bernhard O Palsson | Nature | 2003-11-22 |
| Pressure effects on Clostridium strains isolated from a cold deep-sea environment. | Federico M Lauro, Giulio Bertoloni, Anna Obraztsova, Chiaki Kato, Bradley M Tebo, Douglas H Bartlett | Extremophiles : Life Under Extreme Conditions | 2003-11-19 |
| Cathelicidins and innate defense against invasive bacterial infection. | Victor Nizet, Richard L Gallo | Scandinavian Journal Of Infectious Diseases | 2003-11-19 |
| Genetic influence of CCR5, CCR2, and SDF1 variants on human immunodeficiency virus 1 (HIV-1)-related disease progression and neurological impairment, in children with symptomatic HIV-1 infection. | Kumud K Singh, Charlene F Barroga, Michael D Hughes, Jie Chen, Claire Raskino, Ross E McKinney, Stephen A Spector | The Journal Of Infectious Diseases | 2003-11-18 |
| Scytalidamides A and B, new cytotoxic cyclic heptapeptides from a marine fungus of the genus Scytalidium. | Lik Tong Tan, Xing C Cheng, Paul R Jensen, William Fenical | The Journal Of Organic Chemistry | 2003-11-08 |
| Recombinant influenza C hemagglutinin-esterase as a probe for sialic acid 9-O-acetylation. | Laura T Martin, Andrea Verhagen, Ajit Varki | Methods In Enzymology | 2003-10-29 |
| Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network. | Iman Famili, Jochen Forster, Jens Nielsen, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2003-10-24 |
| Prediction of incident neurocognitive impairment by plasma HIV RNA and CD4 levels early after HIV seroconversion. | Thomas D Marcotte, Reena Deutsch, J Allen McCutchan, David J Moore, Scott Letendre, Ronald J Ellis, Mark R Wallace, Robert K Heaton, Igor Grant, | Archives Of Neurology | 2003-10-22 |
| Description and interpretation of adaptive evolution of Escherichia coli K-12 MG1655 by using a genome-scale in silico metabolic model. | Stephen S Fong, Jennifer Y Marciniak, Bernhard Ø Palsson | Journal Of Bacteriology | 2003-10-18 |
| Genome-scale analysis of the uses of the Escherichia coli genome: model-driven analysis of heterogeneous data sets. | Timothy E Allen, Markus J Herrgård, Mingzhu Liu, Yu Qiu, Jeremy D Glasner, Frederick R Blattner, Bernhard Ø Palsson | Journal Of Bacteriology | 2003-10-18 |
| Reconciling gene expression data with known genome-scale regulatory network structures. | Markus J Herrgård, Markus W Covert, Bernhard Ø Palsson | Genome Research | 2003-10-14 |
| Interactions between inducible nitric oxide and other inflammatory mediators during Helicobacter pylori infection. | Marygorret Obonyo, Donald G Guiney, Joshua Fierer, Sheri P Cole | Helicobacter | 2003-10-11 |
| Human uptake and incorporation of an immunogenic nonhuman dietary sialic acid. | Pam Tangvoranuntakul, Pascal Gagneux, Sandra Diaz, Muriel Bardor, Nissi Varki, Ajit Varki, Elaine Muchmore | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2003-10-01 |
| Human-specific regulation of alpha 2-6-linked sialic acids. | Pascal Gagneux, Monica Cheriyan, Nancy Hurtado-Ziola, Els C M Brinkman van der Linden, Dan Anderson, Harold McClure, Ajit Varki, Nissi M Varki | The Journal Of Biological Chemistry | 2003-09-18 |
| Group B streptococcal beta-hemolysin/cytolysin activates neutrophil signaling pathways in brain endothelium and contributes to development of meningitis. | Kelly S Doran, George Y Liu, Victor Nizet | The Journal Of Clinical Investigation | 2003-09-04 |
| Halovirs A-E, new antiviral agents from a marine-derived fungus of the genus Scytalidium. | David C Rowley, Sara Kelly, Christopher A Kauffman, Paul R Jensen, William Fenical | Bioorganic & Medicinal Chemistry | 2003-09-03 |
| A cyclic carbonate and related polyketides from a marine-derived fungus of the genus Phoma. | Zimin Liu, Paul R Jensen, William Fenical | Phytochemistry | 2003-08-29 |
| An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). | Jennifer L Reed, Thuy D Vo, Christophe H Schilling, Bernhard O Palsson | Genome Biology | 2003-08-28 |
| In vivo phospholipase activity of the Pseudomonas aeruginosa cytotoxin ExoU and protection of mammalian cells with phospholipase A2 inhibitors. | Rebecca M Phillips, David A Six, Edward A Dennis, Partho Ghosh | The Journal Of Biological Chemistry | 2003-08-12 |
| Endogenous production of antimicrobial peptides in innate immunity and human disease. | Richard L Gallo, Victor Nizet | Current Allergy And Asthma Reports | 2003-08-09 |
| Systemic metabolic reactions are obtained by singular value decomposition of genome-scale stoichiometric matrices. | Iman Famili, Bernhard O Palsson | Journal Of Theoretical Biology | 2003-08-06 |
| Scalable method to determine mutations that occur during adaptive evolution of Escherichia coli. | Anuradha Raghunathan, Bernhard O Palsson | Biotechnology Letters | 2003-07-29 |
| New neoverrucosane diterpenoids produced by the marine gliding bacterium Saprospira grandis. | Allan Spyere, David C Rowley, Paul R Jensen, William Fenical | Journal Of Natural Products | 2003-06-28 |
| Antimicrobial and protease inhibitory functions of the human cathelicidin (hCAP18/LL-37) prosequence. | Mohamed Zaiou, Victor Nizet, Richard L Gallo | The Journal Of Investigative Dermatology | 2003-04-26 |
| Thirteen years of building constraint-based in silico models of Escherichia coli. | Jennifer L Reed, Bernhard Ø Palsson | Journal Of Bacteriology | 2003-04-18 |
| Clade B HIV-1 superinfection with wild-type virus after primary infection with drug-resistant clade B virus. | Kersten K Koelsch, Davey M Smith, Susan J Little, Caroline C Ignacio, Theresa R Macaranas, Andrew J Brown, Christos J Petropoulos, Douglas D Richman, Joseph K Wong | AIDS (London, England) | 2003-04-18 |
| Genome-scale microbial in silico models: the constraints-based approach. | Nathan D Price, Jason A Papin, Christophe H Schilling, Bernhard O Palsson | Trends In Biotechnology | 2003-04-08 |
| Trichodermamides A and B, cytotoxic modified dipeptides from the marine-derived fungus Trichoderma virens. | Eliane Garo, Courtney M Starks, Paul R Jensen, William Fenical, Emil Lobkovsky, Jon Clardy | Journal Of Natural Products | 2003-03-29 |
| The membrane domain of SpoIIIE is required for membrane fusion during Bacillus subtilis sporulation. | Marc D Sharp, Kit Pogliano | Journal Of Bacteriology | 2003-03-06 |
| Cutting edge: mast cell antimicrobial activity is mediated by expression of cathelicidin antimicrobial peptide. | Anna Di Nardo, Antonella Vitiello, Richard L Gallo | Journal Of Immunology (Baltimore, Md. : 1950) | 2003-02-21 |
| Neonatal skin in mice and humans expresses increased levels of antimicrobial peptides: innate immunity during development of the adaptive response. | Robert A Dorschner, Kenneth H Lin, Masamoto Murakami, Richard L Gallo | Pediatric Research | 2003-02-20 |
| Streptococcal beta-hemolysins: genetics and role in disease pathogenesis. | Victor Nizet | Trends In Microbiology | 2003-02-05 |
| Molecular genetic analysis of a group A Streptococcus operon encoding serum opacity factor and a novel fibronectin-binding protein, SfbX. | Arthur Jeng, Varja Sakota, Zhongya Li, Vivekananda Datta, Bernard Beall, Victor Nizet | Journal Of Bacteriology | 2003-02-04 |
| Analysis of metabolic capabilities using singular value decomposition of extreme pathway matrices. | Nathan D Price, Jennifer L Reed, Jason A Papin, Iman Famili, Bernhard O Palsson | Biophysical Journal | 2003-01-28 |
| Salinosporamide A: a highly cytotoxic proteasome inhibitor from a novel microbial source, a marine bacterium of the new genus salinospora. | Robert H Feling, Greg O Buchanan, Tracy J Mincer, Christopher A Kauffman, Paul R Jensen, William Fenical | Angewandte Chemie (International Ed. In English) | 2003-01-28 |
| A cytoskeleton-like role for the bacterial cell wall during engulfment of the Bacillus subtilis forespore. | Angelica Abanes-De Mello, Ya-Lin Sun, Stefan Aung, Kit Pogliano | Genes & Development | 2002-12-28 |
| Multiple regions of internalin B contribute to its ability to turn on the Ras-mitogen-activated protein kinase pathway. | Jeremy Copp, Michael Marino, Manidipa Banerjee, Partho Ghosh, Peter van der Geer | The Journal Of Biological Chemistry | 2002-12-17 |
| Recurrent Kawasaki disease-like syndrome in a patient with acquired immunodeficiency syndrome. | Jennifer N Blanchard, Henry C Powell, William R Freeman, Scott Letendre, Daniel Blanchard, Chisato Shimizu, Jane C Burns | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2002-12-13 |
| Chemical ecology of marine microbial defense. | Sebastian Engel, Paul R Jensen, William Fenical | Journal Of Chemical Ecology | 2002-12-12 |
| Extreme pathway lengths and reaction participation in genome-scale metabolic networks. | Jason A Papin, Nathan D Price, Bernhard Ø Palsson | Genome Research | 2002-12-06 |
| Cathelicidin anti-microbial peptide expression in sweat, an innate defense system for the skin. | Masamoto Murakami, Takaaki Ohtake, Robert A Dorschner, Birgit Schittek, Claus Garbe, Richard L Gallo | The Journal Of Investigative Dermatology | 2002-11-26 |
| Genetic requirements for salmonella-induced cytopathology in human monocyte-derived macrophages. | Sara H Browne, Marc L Lesnick, Donald G Guiney | Infection And Immunity | 2002-11-20 |
| MinCD-dependent regulation of the polarity of SpoIIIE assembly and DNA transfer. | Marc D Sharp, Kit Pogliano | The EMBO Journal | 2002-11-12 |
| GW domains of the Listeria monocytogenes invasion protein InlB are SH3-like and mediate binding to host ligands. | Michael Marino, Manidipa Banerjee, Renaud Jonquières, Pascale Cossart, Partho Ghosh | The EMBO Journal | 2002-11-02 |
| Widespread and persistent populations of a major new marine actinomycete taxon in ocean sediments. | Tracy J Mincer, Paul R Jensen, Christopher A Kauffman, William Fenical | Applied And Environmental Microbiology | 2002-09-27 |
| Using Drosophila melanogaster to uncover human disease gene function and potential drug target proteins. | Lawrence T Reiter, Ethan Bier | Expert Opinion On Therapeutic Targets | 2002-09-12 |
| The genomics of symbiosis: hosts keep the baby and the bath water. | Brian Palenik | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2002-09-09 |
| Thalassiolins A-C: new marine-derived inhibitors of HIV cDNA integrase. | David C Rowley, Mark S T Hansen, Denise Rhodes, Christoph A Sotriffer, Haihong Ni, J Andrew McCammon, Frederic D Bushman, William Fenical | Bioorganic & Medicinal Chemistry | 2002-09-06 |
| The carboxyl-terminal region of IkappaB kinase gamma (IKKgamma) is required for full IKK activation. | Constantin Makris, Jaclyn L Roberts, Michael Karin | Molecular And Cellular Biology | 2002-08-23 |
| Cultivation at 37 degrees C enhances Borrelia burgdorferi sensu stricto infectivity for hamsters. | Marygorret Obonyo, Ulrike G Munderloh, Thien N Sam, Timothy J Kurtti | Medical Microbiology And Immunology | 2002-07-26 |
| Fatal Saccharomyces cerevisiae aortic graft infection. | Davey Smith, David Metzgar, Christopher Wills, Joshua Fierer | Journal Of Clinical Microbiology | 2002-06-29 |
| Progression to neuropsychological impairment in human immunodeficiency virus infection predicted by elevated cerebrospinal fluid levels of human immunodeficiency virus RNA. | Ronald J Ellis, David J Moore, Meredith E Childers, Scott Letendre, J Allen McCutchan, Tanya Wolfson, Stephen A Spector, Karen Hsia, Robert K Heaton, Igor Grant | Archives Of Neurology | 2002-06-12 |
| Structure and regulation of the omega-3 polyunsaturated fatty acid synthase genes from the deep-sea bacterium Photobacterium profundum strain SS9. | Eric E Allen, Douglas H Bartlett | Microbiology (Reading, England) | 2002-06-11 |
| Three-dimensional secretion signals in chaperone-effector complexes of bacterial pathogens. | Sara C Birtalan, Rebecca M Phillips, Partho Ghosh | Molecular Cell | 2002-06-07 |
| Comparison of high pressure-induced dissociation of single-stranded DNA-binding protein (SSB) from high pressure-sensitive and high pressure-adapted marine Shewanella species. | Lakshmi N Chilukuri, Douglas H Bartlett, P A George Fortes | Extremophiles : Life Under Extreme Conditions | 2002-05-30 |
| Late-onset group B streptococcal infection in identical twins: insight to disease pathogenesis. | Kelly S Doran, Vivian M Benoit, Robert E Gertz, Bernard Beall, Victor Nizet | Journal Of Perinatology : Official Journal Of The California Perinatal Association | 2002-05-29 |
| Role of gamma interferon in Helicobacter pylori induction of inflammatory mediators during murine infection. | Marygorret Obonyo, Donald G Guiney, Julia Harwood, Joshua Fierer, Sheri P Cole | Infection And Immunity | 2002-05-16 |
| Transcriptional regulation in constraints-based metabolic models of Escherichia coli. | Markus W Covert, Bernhard Ø Palsson | The Journal Of Biological Chemistry | 2002-05-10 |
| Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis. | Nathan D Price, Jason A Papin, Bernhard Ø Palsson | Genome Research | 2002-05-09 |
| Bass hepcidin is a novel antimicrobial peptide induced by bacterial challenge. | Hiroko Shike, Xavier Lauth, Mark E Westerman, Vaughn E Ostland, James M Carlberg, Jon C Van Olst, Chisato Shimizu, Philippe Bulet, Jane C Burns | European Journal Of Biochemistry | 2002-05-03 |
| Aspergilloxide, a novel sesterterpene epoxide from a marine-derived fungus of the genus Aspergillus. | Mercedes Cueto, Paul R Jensen, William Fenical | Organic Letters | 2002-04-27 |
| EULER-PCR: finishing experiments for repeat resolution. | Zufar Mulyukov, Pavel A Pevzner | Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing | 2002-04-04 |
| Enteroinvasive bacteria alter barrier and transport properties of human intestinal epithelium: role of iNOS and COX-2. | Silvia Resta-Lenert, Kim E Barrett | Gastroenterology | 2002-03-23 |
| Old and new antibiotics for pediatric pneumonia. | John S Bradley | Seminars In Respiratory Infections | 2002-03-14 |
| Partitioning of chromosomal DNA during establishment of cellular asymmetry in Bacillus subtilis. | Joe Pogliano, Marc D Sharp, Kit Pogliano | Journal Of Bacteriology | 2002-03-02 |
| Multiple defensive roles for triterpene glycosides from two Caribbean sponges. | Julia Kubanek, Kristen E Whalen, Sebastian Engel, Sarah R Kelly, Timothy P Henkel, William Fenical, Joseph R Pawlik | Oecologia | 2002-03-01 |
| Streptolysin S and necrotising infections produced by group G streptococcus. | Deepali Humar, Vivekananda Datta, Darrin J Bast, Bernard Beall, Joyce C S De Azavedo, Victor Nizet | Lancet (London, England) | 2002-01-26 |
| Strategies for the structural determination of the catalytic domain of Escherichia coli cytotoxic necrotizing factor 1. | Lori Buetow, Gilles Flatau, Katy Chiu, Patrice Boquet, Partho Ghosh | Acta Crystallographica. Section D, Biological Crystallography | 2002-01-24 |
| Cysteine proteinases from distinct cellular compartments are recruited to phagocytic vesicles by Entamoeba histolytica. | Xuchu Que, Linda S Brinen, Penny Perkins, Scott Herdman, Ken Hirata, Bruce E Torian, Harvey Rubin, James H McKerrow, Sharon L Reed | Molecular And Biochemical Parasitology | 2002-01-05 |
| Role of cell-specific SpoIIIE assembly in polarity of DNA transfer. | Marc D Sharp, Kit Pogliano | Science (New York, N.Y.) | 2002-01-05 |
| Group B streptococcal beta-hemolysin/cytolysin promotes invasion of human lung epithelial cells and the release of interleukin-8. | Kelly S Doran, Jennifer C W Chang, Vivian M Benoit, Lars Eckmann, Victor Nizet | The Journal Of Infectious Diseases | 2002-01-03 |
| Immunostimulatory DNA sequences influence the course of adjuvant arthritis. | Arash Ronaghy, Berent J Prakken, Kenji Takabayashi, Gary S Firestein, David Boyle, Nathan J Zvailfler, Sarah T A Roord, Salvatore Albani, Dennis A Carson, Eyal Raz | Journal Of Immunology (Baltimore, Md. : 1950) | 2001-12-26 |
| Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth. | Rafael U Ibarra, Jeremy S Edwards, Bernhard O Palsson | Nature | 2001-12-12 |
| Isolation and characterization of the gene encoding single-stranded-DNA-binding protein (SSB) from four marine Shewanella strains that differ in their temperature and pressure optima for growth. | Lakshmi N Chilukuri, Douglas H Bartlett | Microbiology (Reading, England) | 1997-04-01 |
Center for Microbiome Innovation
