| Article | Authors | Journal | Date |
|---|---|---|---|
| A Malassezia pseudoprotease dominates the secreted hydrolase landscape and is a potential allergen on skin. | Wisely Chua, Carl O Marsh, Si En Poh, Winston Lc Koh, Melody Li Ying Lee, Li Fang Koh, Xin-Zi Emily Tang, Peter See, Zheng Ser, Shi Mei Wang, Radoslaw M Sobota, Thomas L Dawson, Yik Weng Yew, Steven Thng, Anthony J O' Donoghue, Hazel H Oon, John E Common, Hao Li | Biochimie | 2023-09-23 |
| Validating Tools to Detect and Inactivate Monkeypox Virus in Human Milk. | Alex E Clark, Annalee Furst, Kristija Sejane, Lisa Stellwagen, Marissa Proost, David Pride, Davey M Smith, Aaron F Carlin, Lars Bode | Breastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine | 2023-09-21 |
| Assessing the validity of fecal sampling for characterizing variation in threespine stickleback's gut microbiota. | Andreas Härer, Diana J Rennison | PloS One | 2023-09-21 |
| Discrimination of cell-intrinsic and environment-dependent effects of natural genetic variation on Kupffer cell epigenomes and transcriptomes. | Hunter Bennett, Ty D Troutman, Enchen Zhou, Nathanael J Spann, Verena M Link, Jason S Seidman, Christian K Nickl, Yohei Abe, Mashito Sakai, Martina P Pasillas, Justin M Marlman, Carlos Guzman, Mojgan Hosseini, Bernd Schnabl, Christopher K Glass | Nature Immunology | 2023-09-21 |
| Linking bacterial tetrabromopyrrole biosynthesis to coral metamorphosis. | Amanda T Alker, Morgan V Farrell, Alyssa M Demko, Trevor N Purdy, Sanjoy Adak, Bradley S Moore, Jennifer M Sneed, Valerie J Paul, Nicholas J Shikuma | ISME Communications | 2023-09-19 |
| Gardnerella vaginolysin potentiates glycan molecular mimicry by Neisseria gonorrhoeae. | Sydney R Morrill, Sudeshna Saha, Ajit P Varki, Warren G Lewis, Sanjay Ram, Amanda L Lewis | The Journal Of Infectious Diseases | 2023-09-18 |
| Gut microbiota parallelism and divergence associated with colonisation of novel habitats. | Andreas Härer, Alexander A Mauro, Telma G Laurentino, Erica B Rosenblum, Diana J Rennison | Molecular Ecology | 2023-09-16 |
| Universal Viral Screening of Newly Diagnosed Cancer Patients in the United States: A Cost Efficiency Evaluation. | Riha Vaidya, Joseph M Unger, Rohit Loomba, Jessica P Hwang, Rashmi Chugh, Monica A Tincopa, Kathryn B Arnold, Dawn L Hershman, Scott D Ramsey | Cancer Research Communications | 2023-09-14 |
| Sample preconcentration through airjet-induced liquid phase enrichment. | Edward Wang, Louise C Laurent, Drew A Hall, Yu-Hwa Lo | Lab On A Chip | 2023-09-13 |
| Laboratory evolution, transcriptomics, and modeling reveal mechanisms of paraquat tolerance. | Kevin Rychel, Justin Tan, Arjun Patel, Cameron Lamoureux, Ying Hefner, Richard Szubin, Josefin Johnsen, Elsayed Tharwat Tolba Mohamed, Patrick V Phaneuf, Amitesh Anand, Connor A Olson, Joon Ho Park, Anand V Sastry, Laurence Yang, Adam M Feist, Bernhard O Palsson | Cell Reports | 2023-09-13 |
| Subgroup analysis of phase 2 study of ceftolozane/tazobactam in neonates and young infants with pyelonephritis. | Emmanuel Roilides, John S Bradley, Julia Lonchar, Jennifer A Huntington, Prachi Wickremasingha, Feng-Hsiu Su, Christopher J Bruno, Matthew G Johnson | Microbiology Spectrum | 2023-09-12 |
| The silent burden of non-alcoholic fatty liver disease in the elderly: A global burden of disease analysis. | Pojsakorn Danpanichkul, Cheng Han Ng, Mark D Muthiah, Kwanjit Duangsonk, Jie Ning Yong, Darren Jun Hao Tan, Wen Hui Lim, Zhen Yu Wong, Nicholas Syn, Tsubasa Tsusumi, Hirokazu Takahashi, Mohammad Shadab Siddiqui, Vincent Wai-Sun Wong, Christos S Mantzoros, Daniel Q Huang, Mazen Noureddin, Rohit Loomba, Arun J Sanyal, Karn Wijarnpreecha | Alimentary Pharmacology & Therapeutics | 2023-09-11 |
| An approach to zwitterionic peptide design for colorimetric detection of the Southampton norovirus SV3CP protease. | Justin Yeung, Zhicheng Jin, Chuxuan Ling, Maurice Retout, Elany Barbosa da Silva, Manan Damani, Yu-Ci Chang, Wonjun Yim, Anthony J O'Donoghue, Jesse V Jokerst | The Analyst | 2023-09-11 |
| Metabolic engineering of Synechococcus elongatus 7942 for enhanced sucrose biosynthesis. | Bo Wang, Cristal Zuniga, Michael T Guarnieri, Karsten Zengler, Michael Betenbaugh, Jamey D Young | Metabolic Engineering | 2023-09-05 |
| Reply to Augello, P.A.; Wu, J. Comment on "Rogers et al. The Combined Effects of Cannabis, Methamphetamine, and HIV on Neurocognition. 2023, , 674". | Jeffrey M Rogers, Jennifer E Iudicello, Maria Cecilia G Marcondes, Erin E Morgan, Mariana Cherner, Ronald J Ellis, Scott L Letendre, Robert K Heaton, Igor Grant | Viruses | 2023-09-05 |
| Similarities in the induction of the intracellular pathogen response in Caenorhabditis elegans and the type I interferon response in mammals. | Vladimir Lažetić, Lakshmi E Batachari, Alistair B Russell, Emily R Troemel | BioEssays : News And Reviews In Molecular, Cellular And Developmental Biology | 2023-09-04 |
| Microbiomes and metabolomes of dominant coral reef primary producers illustrate a potential role for immunolipids in marine symbioses. | Helena Mannochio-Russo, Sean O I Swift, Kirsten K Nakayama, Christopher B Wall, Emily C Gentry, Morgan Panitchpakdi, Andrés M Caraballo-Rodriguez, Allegra T Aron, Daniel Petras, Kathleen Dorrestein, Tatiana K Dorrestein, Taylor M Williams, Eileen M Nalley, Noam T Altman-Kurosaki, Mike Martinelli, Jeff Y Kuwabara, John L Darcy, Vanderlan S Bolzani, Linda Wegley Kelly, Camilo Mora, Joanne Y Yew, Anthony S Amend, Margaret McFall-Ngai, Nicole A Hynson, Pieter C Dorrestein, Craig E Nelson | Communications Biology | 2023-08-31 |
| Portosystemic shunt placement reveals blood signatures for the development of hepatic encephalopathy through mass spectrometry. | Ana Carolina Dantas Machado, Stephany Flores Ramos, Julia M Gauglitz, Anne-Marie Fassler, Daniel Petras, Alexander A Aksenov, Un Bi Kim, Michael Lazarowicz, Abbey Barnard Giustini, Hamed Aryafar, Irine Vodkin, Curtis Warren, Pieter C Dorrestein, Ali Zarrinpar, Amir Zarrinpar | Nature Communications | 2023-08-31 |
| Metabolic programs of T cell tissue residency empower tumour immunity. | Miguel Reina-Campos, Maximilian Heeg, Kelly Kennewick, Ian T Mathews, Giovanni Galletti, Vida Luna, Quynhanh Nguyen, Hongling Huang, J Justin Milner, Kenneth H Hu, Amy Vichaidit, Natalie Santillano, Brigid S Boland, John T Chang, Mohit Jain, Sonia Sharma, Matthew F Krummel, Hongbo Chi, Steven J Bensinger, Ananda W Goldrath | Nature | 2023-08-30 |
| Urine Excretion, Organ Distribution, and Placental Transfer of 6PPD and 6PPD-Quinone in Mice and Potential Developmental Toxicity through Nuclear Receptor Pathways. | Haoqi Nina Zhao, Sydney P Thomas, Mark J Zylka, Pieter C Dorrestein, Wenxin Hu | Environmental Science & Technology | 2023-08-29 |
| Targeted and Logical Discovery of Piperazic Acid-Bearing Natural Products Based on Genomic and Spectroscopic Signatures. | Daniel Shin, Woong Sub Byun, Sangwook Kang, Ilnam Kang, Eun Seo Bae, Joon Soo An, Ji Hyeon Im, Jiyoon Park, Eunji Kim, Keebeom Ko, Sunghoon Hwang, Honghui Lee, Yun Kwon, Yoon-Joo Ko, Suckchang Hong, Sang-Jip Nam, Seung Bum Kim, William Fenical, Yeo Joon Yoon, Jang-Cheon Cho, Sang Kook Lee, Dong-Chan Oh | Journal Of The American Chemical Society | 2023-08-29 |
| Sex hormones, the stool microbiome, and subclinical atherosclerosis in women with and without HIV. | Brandilyn A Peters, David B Hanna, Yi Wang, Kathleen M Weber, Elizabeth Topper, Allison A Appleton, Anjali Sharma, Howard N Hodis, Nanette Santoro, Chantal Guillemette, Patrick Caron, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi | The Journal Of Clinical Endocrinology And Metabolism | 2023-08-29 |
| Machine learning uncovers the transcriptome in microbial communities and during infection. | Heera Bajpe, Kevin Rychel, Cameron R Lamoureux, Anand V Sastry, Bernhard O Palsson | MSystems | 2023-08-28 |
| Rescues Allergic Contact Dermatitis in Sphingosine 1-Phosphate Receptor 2-Deficient Skin. | Kana Masuda-Kuroki, Shahrzad Alimohammadi, Anna Di Nardo | International Journal Of Molecular Sciences | 2023-08-25 |
| Gut microbiota and fecal short chain fatty acids differ with adiposity and country of origin: the METS-microbiome study. | Gertrude Ecklu-Mensah, Candice Choo-Kang, Maria Gjerstad Maseng, Sonya Donato, Pascal Bovet, Bharathi Viswanathan, Kweku Bedu-Addo, Jacob Plange-Rhule, Prince Oti Boateng, Terrence E Forrester, Marie Williams, Estelle V Lambert, Dale Rae, Nandipha Sinyanya, Amy Luke, Brian T Layden, Stephen O'Keefe, Jack A Gilbert, Lara R Dugas | Nature Communications | 2023-08-24 |
| Staphylococcus epidermidis activates keratinocyte cytokine expression and promotes skin inflammation through the production of phenol-soluble modulins. | Michael R Williams, Michelle D Bagood, Timothy J Enroth, Zoie L Bunch, Nina Jiang, Edward Liu, Samia Almoughrabie, Shadi Khalil, Fengwu Li, Samantha Brinton, Nadja B Cech, Alexander R Horswill, Richard L Gallo | Cell Reports | 2023-08-22 |
| A Protease-Responsive Polymer/Peptide Conjugate and Reversible Assembly of Silver Clusters for the Detection of Enzymatic Activity. | Maurice Retout, Lubna Amer, Wonjun Yim, Matthew N Creyer, Benjamin Lam, Diego F Trujillo, Jan Potempa, Anthony J O'Donoghue, Casey Chen, Jesse V Jokerst | ACS Nano | 2023-08-21 |
| Commensal induce epidermal lipid synthesis important for skin barrier function. | Samia Almoughrabie, Laura Cau, Kellen Cavagnero, Alan M O'Neill, Fengwu Li, Andrea Roso-Mares, Carine Mainzer, Brigitte Closs, Matthew J Kolar, Kevin J Williams, Steven J Bensinger, Richard L Gallo | Science Advances | 2023-08-18 |
| Paired microbiome and metabolome analyses associate bile acid changes with colorectal cancer progression. | Ting Fu, Tao Huan, Gibraan Rahman, Hui Zhi, Zhenjiang Xu, Tae Gyu Oh, Jian Guo, Sally Coulter, Anupriya Tripathi, Cameron Martino, Justin L McCarville, Qiyun Zhu, Fritz Cayabyab, Brian Low, Mingxiao He, Shipei Xing, Fernando Vargas, Ruth T Yu, Annette Atkins, Christopher Liddle, Janelle Ayres, Manuela Raffatellu, Pieter C Dorrestein, Michael Downes, Rob Knight, Ronald M Evans | Cell Reports | 2023-08-18 |
| Diagnosis of childhood febrile illness using a multi-class blood RNA molecular signature. | Dominic Habgood-Coote, Clare Wilson, Chisato Shimizu, Anouk M Barendregt, Ria Philipsen, Rachel Galassini, Irene Rivero Calle, Lesley Workman, Philipp K A Agyeman, Gerben Ferwerda, Suzanne T Anderson, J Merlijn van den Berg, Marieke Emonts, Enitan D Carrol, Colin G Fink, Ronald de Groot, Martin L Hibberd, John Kanegaye, Mark P Nicol, Stéphane Paulus, Andrew J Pollard, Antonio Salas, Fatou Secka, Luregn J Schlapbach, Adriana H Tremoulet, Michael Walther, Werner Zenz, , , , , , Michiel Van der Flier, Heather J Zar, Taco Kuijpers, Jane C Burns, Federico Martinón-Torres, Victoria J Wright, Lachlan J M Coin, Aubrey J Cunnington, Jethro A Herberg, Michael Levin, Myrsini Kaforou | Med (New York, N.Y.) | 2023-08-11 |
| Engineered bacteria detect tumor DNA. | Robert M Cooper, Josephine A Wright, Jia Q Ng, Jarrad M Goyne, Nobumi Suzuki, Young K Lee, Mari Ichinose, Georgette Radford, Feargal J Ryan, Shalni Kumar, Elaine M Thomas, Laura Vrbanac, Rob Knight, Susan L Woods, Daniel L Worthley, Jeff Hasty | Science (New York, N.Y.) | 2023-08-10 |
| A metabolite from commensal Candida albicans enhances the bactericidal activity of macrophages and protects against sepsis. | Peng Gu, Ruofan Liu, Qin Yang, Li Xie, Rongjuan Wei, Jiaxin Li, Fengyi Mei, Tao Chen, Zhenhua Zeng, Yan He, Hongwei Zhou, Hongjuan Peng, Kutty Selva Nandakumar, Huikuan Chu, Yong Jiang, Wei Gong, Ye Chen, Bernd Schnabl, Peng Chen | Cellular & Molecular Immunology | 2023-08-09 |
| The genome-scale metabolic model for the purple non-sulfur bacterium Rhodopseudomonas palustris Bis A53 accurately predicts phenotypes under chemoheterotrophic, chemoautotrophic, photoheterotrophic, and photoautotrophic growth conditions. | Diego Tec-Campos, Camila Posadas, Juan D Tibocha-Bonilla, Deepan Thiruppathy, Nathan Glonek, Cristal Zuñiga, Alejandro Zepeda, Karsten Zengler | PLoS Computational Biology | 2023-08-09 |
| Reconstruction of the last bacterial common ancestor from 183 pangenomes reveals a versatile ancient core genome. | Jason C Hyun, Bernhard O Palsson | Genome Biology | 2023-08-08 |
| Phenotypically complex living materials containing engineered cyanobacteria. | Debika Datta, Elliot L Weiss, Daniel Wangpraseurt, Erica Hild, Shaochen Chen, James W Golden, Susan S Golden, Jonathan K Pokorski | Nature Communications | 2023-08-07 |
| Meditation-induced bloodborne factors as an adjuvant treatment to COVID-19 disease. | Juan P Zuniga-Hertz, Ramamurthy Chitteti, Joe Dispenza, Raphael Cuomo, Jacqueline A Bonds, Elena L Kopp, Sierra Simpson, Jonathan Okerblom, Svetlana Maurya, Brinda K Rana, Atsushi Miyonahara, Ingrid R Niesman, Jacqueline Maree, Gianna Belza, Hillari D Hamilton, Carla Stanton, David J Gonzalez, Michelle A Poirier, Tobias Moeller-Bertram, Hemal H Patel | Brain, Behavior, & Immunity - Health | 2023-08-07 |
| The cervical microbiota of Hispanics living in Puerto Rico is nonoptimal regardless of HPV status. | Daniela Vargas-Robles, Josefina Romaguera, Ian Alvarado-Velez, Eduardo Tosado-Rodríguez, Anelisse Dominicci-Maura, Maria Sanchez, Kara J Wiggin, Magaly Martinez-Ferrer, Jack A Gilbert, Larry J Forney, Filipa Godoy-Vitorino | MSystems | 2023-08-03 |
| A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data. | Pieter Dorrestein, Simone Zuffa, Robin Schmid, Anelize Bauermeister, Paulo Wender Portal Gomes, Andres Caraballo-Rodriguez, Yasin El Abiead, Allegra Aron, Emily Gentry, Jasmine Zemlin, Michael Meehan, Nicole Avalon, Robert Cichewicz, Ekaterina Buzun, Marvic Carrillo-Terrazas, Chia-Yun Hsu, Renee Oles, Adriana Vasquez Ayala, Jiaqi Zhao, Hiutung Chu, Mirte Kuijpers, Sara Jackrel, Fidele Tugizimana, Lerato Nephali, Ian Dubery, Ntakadzeni Madala, Eduarda Moreira, Leticia Costa-Lotufo, Norberto Lopes, Paula Rezende-Teixeira, Paula Jimenez, Bipin Rimal, Andrew Patterson, Matthew Traxler, Rita de Cassia Pessotti, Daniel Alvarado-Villalobos, Giselle Tamayo-Castillo, Priscila Chaverri, Efrain Escudero-Leyva, Luis-Manuel Quiros-Guerrero, Alexandre Bory, Juliette Joubert, Adriano Rutz, Jean-Luc Wolfender, Pierre-Marie Allard, Andreas Sichert, Sammy Pontrelli, Benjamin Pullman, Nuno Bandeira, William Gerwick, Katia Gindro, Josep Massana-Codina, Berenike Wagner, Karl Forchhammer, Daniel Petras, Nicole Aiosa, Neha Garg, Manuel Liebeke, Patric Bourceau, Kyo Bin Kang, Henna Gadhavi, Luiz Pedro de Carvalho, Mariana Silva Dos Santos, Alicia Pérez-Lorente, Carlos Molina-Santiago, Diego Romero, Raimo Franke, Mark Broenstrup, Arturo Vera Ponce De Leon, Phillip Pope, Sabina La Rosa, Giorgia La Barbera, Henrik Roager, Martin Laursen, Fabian Hammerle, Bianka Siewert, Ursula Peintner, Cuauhtemoc Licona-Cassani, Lorena Rodriguez-Orduña, Evelyn Rampler, Felina Hildebrand, Gunda Koellensperger, Harald Schoeny, Katharina Hohenwallner, Lisa Panzenboeck, Rachel Gregor, Ellis O'Neill, Eve Roxborough, Jane Odoi, Nicole Bale, Su Ding, Jaap S Sinninghe Damsté, Xueli Guan, Jerry Cui, Kou-San Ju, Denise Silva, Fernanda Silva, Gilvan da Silva, Hector Koolen, Carlismari Grundmann, Jason Clement, Hosein Mohimani, Kirk Broders, Kerry McPhail, Sidnee Ober-Singleton, Christopher Rath, Daniel McDonald, Rob Knight, Mingxun Wang | Research Square | 2023-08-03 |
| Microbial short-chain fatty acids regulate drug seeking and transcriptional control in a model of cocaine seeking. | Katherine R Meckel, Sierra S Simpson, Arthur Godino, Emily G Peck, Jonathon P Sens, Michael Z Leonard, Olivier George, Erin S Calipari, Rebecca S Hofford, Drew D Kiraly | Neuropsychopharmacology : Official Publication Of The American College Of Neuropsychopharmacology | 2023-08-02 |
| A modular plasmid toolkit applied in marine bacteria reveals functional insights during bacteria-stimulated metamorphosis. | Amanda T Alker, Morgan V Farrell, Alpher E Aspiras, Tiffany L Dunbar, Andriy Fedoriouk, Jeffrey E Jones, Sama R Mikhail, Gabriella Y Salcedo, Bradley S Moore, Nicholas J Shikuma | MBio | 2023-08-02 |
| Common antibiotics, azithromycin and amoxicillin, affect gut metagenomics within a household. | Jessica Chopyk, Ana Georgina Cobián Güemes, Claudia Ramirez-Sanchez, Hedieh Attai, Melissa Ly, Marcus B Jones, Roland Liu, Chenyu Liu, Kun Yang, Xin M Tu, Shira R Abeles, Karen Nelson, David T Pride | BMC Microbiology | 2023-08-02 |
| Gut-microbiome centered therapies for alcohol-associated liver disease. | Tannaz Ranjbarian, Bernd Schnabl | Seminars In Liver Disease | 2023-08-01 |
| G protein-coupled receptors: A target for microbial metabolites and a mechanistic link to microbiome-immune-brain interactions. | Gajender Aleti, Emily A Troyer, Suzi Hong | Brain, Behavior, & Immunity - Health | 2023-07-31 |
| Compounding Phages for Therapeutic Applications. | Ana Georgina Cobián Güemes, Tram Le, Maria Isabel Rojas, Nicole E Jacobson, Helena Villela, Katelyn McNair, Shr-Hau Hung, Lili Han, Lance Boling, Jessica Claire Octavio, Lorena Dominguez, Vito Adrian Cantú, Sinéad Archdeacon, Alejandro A Vega, Michelle A An, Hamza Hajama, Gregory Burkeen, Robert A Edwards, Douglas J Conrad, Forest Rohwer, Anca M Segall | Viruses | 2023-07-30 |
| Roles for the RNA-Binding Protein Rbp2 in Regulating the Circadian Clock. | Briana M McKnight, Shannon Kang, Tam H Le, Mingxu Fang, Genelyn Carbonel, Esbeydi Rodriguez, Sutharsan Govindarajan, Nitsan Albocher-Kedem, Amanda L Tran, Nicholas R Duncan, Orna Amster-Choder, Susan S Golden, Susan E Cohen | Journal Of Biological Rhythms | 2023-07-28 |
| Adaptive evolution of a minimal organism with a synthetic genome. | Troy E Sandberg, Kim S Wise, Christopher Dalldorf, Richard Szubin, Adam M Feist, John I Glass, Bernhard O Palsson | IScience | 2023-07-28 |
| Greengenes2 unifies microbial data in a single reference tree. | Daniel McDonald, Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio Gonzalez, James T Morton, Giorgia Nicolaou, Donovan H Parks, Søren M Karst, Mads Albertsen, Philip Hugenholtz, Todd DeSantis, Se Jin Song, Andrew Bartko, Aki S Havulinna, Pekka Jousilahti, Susan Cheng, Michael Inouye, Teemu Niiranen, Mohit Jain, Veikko Salomaa, Leo Lahti, Siavash Mirarab, Rob Knight | Nature Biotechnology | 2023-07-27 |
| Generation of accurate, expandable phylogenomic trees with uDance. | Metin Balaban, Yueyu Jiang, Qiyun Zhu, Daniel McDonald, Rob Knight, Siavash Mirarab | Nature Biotechnology | 2023-07-27 |
| miR-15/16 clusters restrict effector Treg cell differentiation and function. | Jiayi Dong, William J Huth, Nimi Marcel, Ziyue Zhang, Ling-Li Lin, Li-Fan Lu | The Journal Of Experimental Medicine | 2023-07-27 |
| Murine Models of Salmonella Infection. | Gregory T Walker, Romana R Gerner, Sean-Paul Nuccio, Manuela Raffatellu | Current Protocols | 2023-07-24 |
| Cationic-nanogel nasal vaccine containing the ectodomain of RSV-small hydrophobic protein induces protective immunity in rodents. | Shingo Umemoto, Rika Nakahashi-Ouchida, Yoshikazu Yuki, Shiho Kurokawa, Tomonori Machita, Yohei Uchida, Hiromi Mori, Tomoyuki Yamanoue, Takehiko Shibata, Shin-Ichi Sawada, Kazuya Ishige, Takashi Hirano, Kohtaro Fujihashi, Kazunari Akiyoshi, Yosuke Kurashima, Daisuke Tokuhara, Peter B Ernst, Masashi Suzuki, Hiroshi Kiyono | NPJ Vaccines | 2023-07-24 |
| Fecal virome transplantation is sufficient to alter fecal microbiota and drive lean and obese body phenotypes in mice. | Joshua M Borin, Roland Liu, Yanhan Wang, Tsung-Chin Wu, Jessica Chopyk, Lina Huang, Peiting Kuo, Chandrabali Ghose, Justin R Meyer, Xin M Tu, Bernd Schnabl, David T Pride | Gut Microbes | 2023-07-21 |
| A comprehensive Drosophila resource to identify key functional interactions between SARS-CoV-2 factors and host proteins. | Annabel Guichard, Shenzhao Lu, Oguz Kanca, Daniel Bressan, Yan Huang, Mengqi Ma, Sara Sanz Juste, Jonathan C Andrews, Kristy L Jay, Marketta Sneider, Ruth Schwartz, Mei-Chu Huang, Danqing Bei, Hongling Pan, Liwen Ma, Wen-Wen Lin, Ankush Auradkar, Pranjali Bhagwat, Soo Park, Kenneth H Wan, Takashi Ohsako, Toshiyuki Takano-Shimizu, Susan E Celniker, Michael F Wangler, Shinya Yamamoto, Hugo J Bellen, Ethan Bier | Cell Reports | 2023-07-20 |
| Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP). | Sanjay Jain, Liming Pei, Jeffrey M Spraggins, Michael Angelo, James P Carson, Nils Gehlenborg, Fiona Ginty, Joana P Gonçalves, James S Hagood, John W Hickey, Neil L Kelleher, Louise C Laurent, Shin Lin, Yiing Lin, Huiping Liu, Alexandra Naba, Ernesto S Nakayasu, Wei-Jun Qian, Andrea Radtke, Paul Robson, Brent R Stockwell, Raf Van de Plas, Ioannis S Vlachos, Mowei Zhou, , Katy Börner, Michael P Snyder | Nature Cell Biology | 2023-07-19 |
| An atlas of healthy and injured cell states and niches in the human kidney. | Blue B Lake, Rajasree Menon, Seth Winfree, Qiwen Hu, Ricardo Melo Ferreira, Kian Kalhor, Daria Barwinska, Edgar A Otto, Michael Ferkowicz, Dinh Diep, Nongluk Plongthongkum, Amanda Knoten, Sarah Urata, Laura H Mariani, Abhijit S Naik, Sean Eddy, Bo Zhang, Yan Wu, Diane Salamon, James C Williams, Xin Wang, Karol S Balderrama, Paul J Hoover, Evan Murray, Jamie L Marshall, Teia Noel, Anitha Vijayan, Austin Hartman, Fei Chen, Sushrut S Waikar, Sylvia E Rosas, Francis P Wilson, Paul M Palevsky, Krzysztof Kiryluk, John R Sedor, Robert D Toto, Chirag R Parikh, Eric H Kim, Rahul Satija, Anna Greka, Evan Z Macosko, Peter V Kharchenko, Joseph P Gaut, Jeffrey B Hodgin, , Michael T Eadon, Pierre C Dagher, Tarek M El-Achkar, Kun Zhang, Matthias Kretzler, Sanjay Jain | Nature | 2023-07-19 |
| Congenital CMV associated with diaphragm dysfunction: a rare cause of tachypnoea. | Rebecca Carter, Maayan Yakir, Julie Ryu, Katherine Weiss | BMJ Case Reports | 2023-07-19 |
| Multiple pals gene modules control a balance between immunity and development in Caenorhabditis elegans. | Vladimir Lažetić, Michael J Blanchard, Theresa Bui, Emily R Troemel | PLoS Pathogens | 2023-07-18 |
| Immunization with lytic polysaccharide monooxygenase CbpD induces protective immunity against pneumonia. | Fatemeh Askarian, Chih-Ming Tsai, Gabriele Cordara, Raymond H Zurich, Elisabet Bjånes, Ole Golten, Henrik Vinther Sørensen, Armin Kousha, Angela Meier, Elvis Chikwati, Jack-Ansgar Bruun, Judith Anita Ludviksen, Biswa Choudhury, Desmond Trieu, Stanley Davis, Per Kristian Thorén Edvardsen, Tom Eirik Mollnes, George Y Liu, Ute Krengel, Douglas J Conrad, Gustav Vaaje-Kolstad, Victor Nizet | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2023-07-17 |
| Mpox vaccine and infection-driven human immune signatures: an immunological analysis of an observational study. | Hallie Cohn, Nathaniel Bloom, Gianna Y Cai, Jordan J Clark, Alison Tarke, Maria C Bermúdez-González, Deena R Altman, Luz Amarilis Lugo, Francisco Pereira Lobo, Susanna Marquez, , Jin-Qiu Chen, Wenlin Ren, Lili Qin, Jennifer L Yates, Danielle T Hunt, William T Lee, Shane Crotty, Florian Krammer, Alba Grifoni, Alessandro Sette, Viviana Simon, Camila H Coelho | The Lancet. Infectious Diseases | 2023-07-17 |
| Longitudinal flux balance analyses of a patient with episodic colonic inflammation reveals microbiome metabolic dynamics. | Arianna Basile, Almut Heinken, Johannes Hertel, Larry Smarr, Weizhong Li, Laura Treu, Giorgio Valle, Stefano Campanaro, Ines Thiele | Gut Microbes | 2023-07-14 |
| Structural and photophysical characterization of the small ultra-red fluorescent protein. | Atanu Maiti, Cosmo Z Buffalo, Saumya Saurabh, Felipe Montecinos-Franjola, Justin S Hachey, William J Conlon, Geraldine N Tran, Bakar Hassan, Kylie J Walters, Mikhail Drobizhev, W E Moerner, Partho Ghosh, Hiroshi Matsuo, Roger Y Tsien, John Y Lin, Erik A Rodriguez | Nature Communications | 2023-07-12 |
| Structure-based discovery of thiosemicarbazones as SARS-CoV-2 main protease inhibitors. | Vinícius Gonçalves Maltarollo, Elany Barbosa da Silva, Thales Kronenberger, Marina Mol Sena Andrade, Gabriel V de Lima Marques, Nereu J Cândido Oliveira, Lucianna H Santos, Celso de Oliveira Rezende Júnior, Ana C Cassiano Martinho, Danielle Skinner, Pavla Fajtová, Thaís H M Fernandes, Eduardo da Silveira Dos Santos, Poliana A Rodrigues Gazolla, Ana P Martins de Souza, Milene Lopes da Silva, Fabíola S Dos Santos, Stefânia N Lavorato, Ana C Oliveira Bretas, Diogo Teixeira Carvalho, Lucas Lopardi Franco, Stephanie Luedtke, Miriam A Giardini, Antti Poso, Luiz C Dias, Larissa M Podust, Ricardo J Alves, James McKerrow, Saulo F Andrade, Róbson R Teixeira, Jair L Siqueira-Neto, Anthony O'Donoghue, Renata B de Oliveira, Rafaela S Ferreira | Future Medicinal Chemistry | 2023-07-12 |
| Nanoscaled Discovery of a Shunt Rifamycin from Using a Three-Color GFP-Tagged Macrophage Infection Assay. | Nhan T Pham, Joana Alves, Fiona A Sargison, Reiko Cullum, Jan Wildenhain, William Fenical, Mark S Butler, David A Mead, Brendan M Duggan, J Ross Fitzgerald, James J La Clair, Manfred Auer | ACS Infectious Diseases | 2023-07-11 |
| 9,10-KODA, an α-ketol produced by the tonoplast-localized 9-lipoxygenase ZmLOX5, plays a signaling role in maize defense against insect herbivory. | Peiguo Yuan, Eli Borrego, Yong-Soon Park, Zachary Gorman, Pei-Cheng Huang, Jordan Tolley, Shawn A Christensen, Jantana Blanford, Aruna Kilaru, Robert Meeley, Hisashi Koiwa, Stefan Vidal, Alisa Huffaker, Eric Schmelz, Michael V Kolomiets | Molecular Plant | 2023-07-11 |
| Association of polygenic score and the involvement of cholinergic and glutamatergic pathways with lithium treatment response in patients with bipolar disorder. | Azmeraw T Amare, Anbupalam Thalamuthu, Klaus Oliver Schubert, Janice M Fullerton, Muktar Ahmed, Simon Hartmann, Sergi Papiol, Urs Heilbronner, Franziska Degenhardt, Fasil Tekola-Ayele, Liping Hou, Yi-Hsiang Hsu, Tatyana Shekhtman, Mazda Adli, Nirmala Akula, Kazufumi Akiyama, Raffaella Ardau, Bárbara Arias, Jean-Michel Aubry, Roland Hasler, Hélène Richard-Lepouriel, Nader Perroud, Lena Backlund, Abesh Kumar Bhattacharjee, Frank Bellivier, Antonio Benabarre, Susanne Bengesser, Joanna M Biernacka, Armin Birner, Cynthia Marie-Claire, Pablo Cervantes, Hsi-Chung Chen, Caterina Chillotti, Sven Cichon, Cristiana Cruceanu, Piotr M Czerski, Nina Dalkner, Maria Del Zompo, J Raymond DePaulo, Bruno Étain, Stephane Jamain, Peter Falkai, Andreas J Forstner, Louise Frisen, Mark A Frye, Sébastien Gard, Julie S Garnham, Fernando S Goes, Maria Grigoroiu-Serbanescu, Andreas J Fallgatter, Sophia Stegmaier, Thomas Ethofer, Silvia Biere, Kristiyana Petrova, Ceylan Schuster, Kristina Adorjan, Monika Budde, Maria Heilbronner, Janos L Kalman, Mojtaba Oraki Kohshour, Daniela Reich-Erkelenz, Sabrina K Schaupp, Eva C Schulte, Fanny Senner, Thomas Vogl, Ion-George Anghelescu, Volker Arolt, Udo Dannlowski, Detlef Dietrich, Christian Figge, Markus Jäger, Fabian U Lang, Georg Juckel, Carsten Konrad, Jens Reimer, Max Schmauß, Andrea Schmitt, Carsten Spitzer, Martin von Hagen, Jens Wiltfang, Jörg Zimmermann, Till F M Andlauer, Andre Fischer, Felix Bermpohl, Philipp Ritter, Silke Matura, Anna Gryaznova, Irina Falkenberg, Cüneyt Yildiz, Tilo Kircher, Julia Schmidt, Marius Koch, Kathrin Gade, Sarah Trost, Ida S Haussleiter, Martin Lambert, Anja C Rohenkohl, Vivien Kraft, Paul Grof, Ryota Hashimoto, Joanna Hauser, Stefan Herms, Per Hoffmann, Esther Jiménez, Jean-Pierre Kahn, Layla Kassem, Po-Hsiu Kuo, Tadafumi Kato, John Kelsoe, Sarah Kittel-Schneider, Ewa Ferensztajn-Rochowiak, Barbara König, Ichiro Kusumi, Gonzalo Laje, Mikael Landén, Catharina Lavebratt, Marion Leboyer, Susan G Leckband, Alfonso Tortorella, Mirko Manchia, Lina Martinsson, Michael J McCarthy, Susan McElroy, Francesc Colom, Vincent Millischer, Marina Mitjans, Francis M Mondimore, Palmiero Monteleone, Caroline M Nievergelt, Markus M Nöthen, Tomas Novák, Claire O'Donovan, Norio Ozaki, Andrea Pfennig, Claudia Pisanu, James B Potash, Andreas Reif, Eva Reininghaus, Guy A Rouleau, Janusz K Rybakowski, Martin Schalling, Peter R Schofield, Barbara W Schweizer, Giovanni Severino, Paul D Shilling, Katzutaka Shimoda, Christian Simhandl, Claire M Slaney, Alessio Squassina, Thomas Stamm, Pavla Stopkova, Mario Maj, Gustavo Turecki, Eduard Vieta, Julia Veeh, Stephanie H Witt, Adam Wright, Peter P Zandi, Philip B Mitchell, Michael Bauer, Martin Alda, Marcella Rietschel, Francis J McMahon, Thomas G Schulze, Scott R Clark, Bernhard T Baune | Molecular Psychiatry | 2023-07-11 |
| Pangenome analysis reveals the genetic basis for taxonomic classification of the Lactobacillaceae family. | Akanksha Rajput, Siddharth M Chauhan, Omkar S Mohite, Jason C Hyun, Omid Ardalani, Leonie J Jahn, Morten Oa Sommer, Bernhard O Palsson | Food Microbiology | 2023-07-08 |
| Bacterial cytological profiling reveals interactions between jumbo phage φKZ infection and cell wall active antibiotics in Pseudomonas aeruginosa. | Hannah Tsunemoto, Joseph Sugie, Eray Enustun, Kit Pogliano, Joe Pogliano | PloS One | 2023-07-07 |
| Antigen pressure from two founder viruses induces multiple insertions at a single antibody position to generate broadly neutralizing HIV antibodies. | Collin Joyce, Sasha Murrell, Ben Murrell, Oluwarotimi Omorodion, Lorena S Ver, Nancy Carrico, Raiza Bastidas, Rebecca Nedellec, Michael Bick, Jordan Woehl, Fangzhu Zhao, Alison Burns, Shawn Barman, Michael Appel, Alejandra Ramos, Lalinda Wickramasinghe, Kemal Eren, Thomas Vollbrecht, Davey M Smith, Sergei L Kosakovsky Pond, Ryan McBride, Charli Worth, Facundo Batista, Devin Sok, , Pascal Poignard, Bryan Briney, Ian A Wilson, Elise Landais, Dennis R Burton | PLoS Pathogens | 2023-06-29 |
| A conserved three-dimensional pattern in a Streptococcus pyogenes M protein immunogen elicits M type cross-reactivity. | Kuei-Chen Wang, Eziz Kuliyev, Victor Nizet, Partho Ghosh | The Journal Of Biological Chemistry | 2023-06-28 |
| Human milk immune factors, maternal nutritional status, and infant sex: The INSPIRE study. | Beatrice Caffé, Aaron Blackwell, Bethaney D Fehrenkamp, Janet E Williams, Ryan M Pace, Kimberly A Lackey, Lorena Ruiz, Juan M Rodríguez, Mark A McGuire, James A Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, Linda J Kvist, Gloria E Otoo, Rossina G Pareja, Lars Bode, Dubale Gebeyehu, Debela K Gindola, Sarah Boothman, Katherine Flores, Michelle K McGuire, Courtney L Meehan | American Journal Of Human Biology : The Official Journal Of The Human Biology Council | 2023-06-26 |
| Multi-level analysis of the gut-brain axis shows autism spectrum disorder-associated molecular and microbial profiles. | James T Morton, Dong-Min Jin, Robert H Mills, Yan Shao, Gibraan Rahman, Daniel McDonald, Qiyun Zhu, Metin Balaban, Yueyu Jiang, Kalen Cantrell, Antonio Gonzalez, Julie Carmel, Linoy Mia Frankiensztajn, Sandra Martin-Brevet, Kirsten Berding, Brittany D Needham, María Fernanda Zurita, Maude David, Olga V Averina, Alexey S Kovtun, Antonio Noto, Michele Mussap, Mingbang Wang, Daniel N Frank, Ellen Li, Wenhao Zhou, Vassilios Fanos, Valery N Danilenko, Dennis P Wall, Paúl Cárdenas, Manuel E Baldeón, Sébastien Jacquemont, Omry Koren, Evan Elliott, Ramnik J Xavier, Sarkis K Mazmanian, Rob Knight, Jack A Gilbert, Sharon M Donovan, Trevor D Lawley, Bob Carpenter, Richard Bonneau, Gaspar Taroncher-Oldenburg | Nature Neuroscience | 2023-06-26 |
| Dietary weight loss-induced improvements in metabolic function are enhanced by exercise in people with obesity and prediabetes. | Joseph W Beals, Brandon D Kayser, Gordon I Smith, George G Schweitzer, Kyleigh Kirbach, Monica L Kearney, Jun Yoshino, Gibraan Rahman, Rob Knight, Bruce W Patterson, Samuel Klein | Nature Metabolism | 2023-06-26 |
| Large library docking for novel SARS-CoV-2 main protease non-covalent and covalent inhibitors. | Elissa A Fink, Conner Bardine, Stefan Gahbauer, Isha Singh, Tyler Detomasi, Kris White, Shuo Gu, Xiaobo Wan, Jun Chen, Beatrice Ary, Isabella Glenn, Joseph O'Connell, Henry O'Donnell, Pavla Fajtová, Jiankun Lyu, Seth Vigneron, Nicholas J Young, Ivan S Kondratov, Arghavan Alisoltani, Lacy M Simons, Ramon Lorenzo-Redondo, Egon A Ozer, Judd F Hultquist, Anthony J O'Donoghue, Yurii Moroz, Jack Taunton, Adam R Renslo, John J Irwin, Adolfo García-Sastre, Brian K Shoichet, Charles S Craik | Protein Science : A Publication Of The Protein Society | 2023-06-24 |
| Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution. | Caitriona Brennan, Rodolfo A Salido, Pedro Belda-Ferre, MacKenzie Bryant, Charles Cowart, Maria D Tiu, Antonio González, Daniel McDonald, Caitlin Tribelhorn, Amir Zarrinpar, Rob Knight | MSystems | 2023-06-23 |
| Chemoproteomic identification of a DPP4 homolog in Bacteroides thetaiotaomicron. | Laura J Keller, Taylor H Nguyen, Lawrence J Liu, Brianna M Hurysz, Markus Lakemeyer, Matteo Guerra, Danielle J Gelsinger, Rachael Chanin, Nhi Ngo, Kenneth M Lum, Franco Faucher, Phillip Ipock, Micah J Niphakis, Ami S Bhatt, Anthony J O'Donoghue, Kerwyn Casey Huang, Matthew Bogyo | Nature Chemical Biology | 2023-06-22 |
| Metagenomics reveals novel microbial signatures of farm exposures in house dust. | Ziyue Wang, Kathryn R Dalton, Mikyeong Lee, Christine G Parks, Laura E Beane Freeman, Qiyun Zhu, Antonio González, Rob Knight, Shanshan Zhao, Alison A Motsinger-Reif, Stephanie J London | Frontiers In Microbiology | 2023-06-21 |
| Associations of Circulating Estrogens and Estrogen Metabolites with Fecal and Oral Microbiome in Postmenopausal Women in the Ghana Breast Health Study. | Zeni Wu, Ruth M Pfeiffer, Doratha A Byrd, Yunhu Wan, Daniel Ansong, Joe-Nat Clegg-Lamptey, Beatrice Wiafe-Addai, Lawrence Edusei, Ernest Adjei, Nicholas Titiloye, Florence Dedey, Francis Aitpillah, Joseph Oppong, Verna Vanderpuye, Ernest Osei-Bonsu, Casey L Dagnall, Kristine Jones, Amy Hutchinson, Belynda D Hicks, Thomas U Ahearn, Rob Knight, Richard Biritwum, Joel Yarney, Seth Wiafe, Baffour Awuah, Kofi Nyarko, Montserrat Garcia-Closas, Rashmi Sinha, Jonine D Figueroa, Louise A Brinton, Britton Trabert, Emily Vogtmann | Microbiology Spectrum | 2023-06-21 |
| Global branches and local states of the human gut microbiome define associations with environmental and intrinsic factors. | Julien Tap, Franck Lejzerowicz, Aurélie Cotillard, Matthieu Pichaud, Daniel McDonald, Se Jin Song, Rob Knight, Patrick Veiga, Muriel Derrien | Nature Communications | 2023-06-20 |
| Expanding the Utility of Bioinformatic Data for the Full Stereostructural Assignments of Marinolides A and B, 24- and 26-Membered Macrolactones Produced by a Chemically Exceptional Marine-Derived Bacterium. | Min Cheol Kim, Jaclyn M Winter, Reiko Cullum, Alexander J Smith, William Fenical | Marine Drugs | 2023-06-20 |
| Activation mechanism and activity of globupain, a thermostable C11 protease from the Arctic Mid-Ocean Ridge hydrothermal system. | Victoria Røyseth, Brianna M Hurysz, Anna-Karina Kaczorowska, Sebastian Dorawa, Anita-Elin Fedøy, Hasan Arsın, Mateus Sá M Serafim, Samuel A Myers, Olesia Werbowy, Tadeusz Kaczorowski, Runar Stokke, Anthony J O'Donoghue, Ida Helene Steen | Frontiers In Microbiology | 2023-06-19 |
| Bacteriophage Therapy of Multidrug-resistant Achromobacter in an 11-Year-old Boy With Cystic Fibrosis Assessed by Metagenome Analysis. | John S Bradley, Hamza Hajama, Kathryn Akong, Mary Jordan, Dayna Stout, Ryan S Rowe, Douglas J Conrad, Sara Hingtgen, Anca M Segall | The Pediatric Infectious Disease Journal | 2023-06-19 |
| A pharmacoproteomic landscape of organotypic intervention responses in Gram-negative sepsis. | Tirthankar Mohanty, Christofer A Q Karlsson, Yashuan Chao, Erik Malmström, Eleni Bratanis, Andrietta Grentzmann, Martina Mørch, Victor Nizet, Lars Malmström, Adam Linder, Oonagh Shannon, Johan Malmström | Nature Communications | 2023-06-17 |
| ants promote fungus garden hygiene using -derived metabolite cues. | Kathleen E Kyle, Sara P Puckett, Andrés Mauricio Caraballo-Rodríguez, José Rivera-Chávez, Robert M Samples, Cody E Earp, Huzefa A Raja, Cedric J Pearce, Madeleine Ernst, Justin J J van der Hooft, Madison E Adams, Nicholas H Oberlies, Pieter C Dorrestein, Jonathan L Klassen, Marcy J Balunas | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2023-06-15 |
| Host and Water Microbiota Are Differentially Linked to Potential Human Pathogen Accumulation in Oysters. | Rachel E Diner, Amy Zimmer-Faust, Emily Cooksey, Sarah Allard, Sho M Kodera, Emily Kunselman, Yash Garodia, Marc P Verhougstraete, Andrew E Allen, John Griffith, Jack A Gilbert | Applied And Environmental Microbiology | 2023-06-15 |
| The gut-liver axis and gut microbiota in health and liver disease. | Cynthia L Hsu, Bernd Schnabl | Nature Reviews. Microbiology | 2023-06-14 |
| Elucidating the CodY regulon in USA300 substrains TCH1516 and LAC. | Ye Gao, Saugat Poudel, Yara Seif, Zeyang Shen, Bernhard O Palsson | MSystems | 2023-06-13 |
| Immune resilience despite inflammatory stress promotes longevity and favorable health outcomes including resistance to infection. | Sunil K Ahuja, Muthu Saravanan Manoharan, Grace C Lee, Lyle R McKinnon, Justin A Meunier, Maristella Steri, Nathan Harper, Edoardo Fiorillo, Alisha M Smith, Marcos I Restrepo, Anne P Branum, Matthew J Bottomley, Valeria Orrù, Fabio Jimenez, Andrew Carrillo, Lavanya Pandranki, Caitlyn A Winter, Lauryn A Winter, Alvaro A Gaitan, Alvaro G Moreira, Elizabeth A Walter, Guido Silvestri, Christopher L King, Yong-Tang Zheng, Hong-Yi Zheng, Joshua Kimani, T Blake Ball, Francis A Plummer, Keith R Fowke, Paul N Harden, Kathryn J Wood, Martin T Ferris, Jennifer M Lund, Mark T Heise, Nigel Garrett, Kristen R Canady, Salim S Abdool Karim, Susan J Little, Sara Gianella, Davey M Smith, Scott Letendre, Douglas D Richman, Francesco Cucca, Hanh Trinh, Sandra Sanchez-Reilly, Joan M Hecht, Jose A Cadena Zuluaga, Antonio Anzueto, Jacqueline A Pugh, , Brian K Agan, Robert Root-Bernstein, Robert A Clark, Jason F Okulicz, Weijing He | Nature Communications | 2023-06-13 |
| Determination of Effect Sizes for Power Analysis for Microbiome Studies Using Large Microbiome Databases. | Gibraan Rahman, Daniel McDonald, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Lingjing Jiang, Climent Casals-Pascual, Daniel Hakim, Amanda Hazel Dilmore, Brent Nowinski, Shyamal Peddada, Rob Knight | Genes | 2023-06-09 |
| Elucidation of independently modulated genes in reveals carbon sources that control its expression of hemolytic toxins. | Yujiro Hirose, Saugat Poudel, Anand V Sastry, Kevin Rychel, Cameron R Lamoureux, Richard Szubin, Daniel C Zielinski, Hyun Gyu Lim, Nitasha D Menon, Helena Bergsten, Satoshi Uchiyama, Tomoki Hanada, Shigetada Kawabata, Bernhard O Palsson, Victor Nizet | MSystems | 2023-06-06 |
| Systems biology of competency in Vibrio natriegens is revealed by applying novel data analytics to the transcriptome. | Jongoh Shin, Kevin Rychel, Bernhard O Palsson | Cell Reports | 2023-06-06 |
| Perceived risks and benefits of enrolling people with HIV at the end of life in cure research in Southern California, United States. | Karine Dubé, Brittany Shelton, Hursch Patel, Samuel O Ndukwe, Susanna Concha-Garcia, Cheryl Dullano, Stephanie Solso, Steven Hendrickx, Andy Kaytes, Jeff Taylor, Thomas J Villa, Susan J Little, Patricia K Riggs, David Lessard, Anish K Arora, Cecilia T Costiniuk, Shadi Eskaf, Davey M Smith, Sara Gianella | Journal Of Virus Eradication | 2023-06-05 |
| Metabolomics of bacterial-fungal pairwise interactions reveal conserved molecular mechanisms. | Gordon T Luu, Jessica C Little, Emily C Pierce, Manon Morin, Celine A Ertekin, Benjamin E Wolfe, Oliver Baars, Rachel J Dutton, Laura M Sanchez | The Analyst | 2023-06-01 |
| TEMPORARILY REMOVED: Diagnosis of multisystem inflammatory syndrome in children by a whole-blood transcriptional signature. | Heather R Jackson, Luca Miglietta, Dominic Habgood-Coote, Giselle D'Souza, Priyen Shah, Samuel Nichols, Ortensia Vito, Oliver Powell, Maisey Salina Davidson, Chisato Shimizu, Philipp K A Agyeman, Coco R Beudeker, Karen Brengel-Pesce, Enitan D Carrol, Michael J Carter, Tisham De, Irini Eleftheriou, Marieke Emonts, Cristina Epalza, Pantelis Georgiou, Ronald De Groot, Katy Fidler, Colin Fink, Daniëlle van Keulen, Taco Kuijpers, Henriette Moll, Irene Papatheodorou, Stephane Paulus, Marko Pokorn, Andrew J Pollard, Irene Rivero-Calle, Pablo Rojo, Fatou Secka, Luregn J Schlapbach, Adriana H Tremoulet, Maria Tsolia, Effua Usuf, Michiel Van Der Flier, Ulrich Von Both, Clementien Vermont, Shunmay Yeung, Dace Zavadska, Werner Zenz, Lachlan J M Coin, Aubrey Cunnington, Jane C Burns, Victoria Wright, Federico Martinon-Torres, Jethro A Herberg, Jesus Rodriguez Manzano, Myrsini Kaforou, Michael Levin, | Journal Of The Pediatric Infectious Diseases Society | 2023-05-31 |
| Gut microbiota, circulating inflammatory markers and metabolites, and carotid artery atherosclerosis in HIV infection. | Zheng Wang, Brandilyn A Peters, MacKenzie Bryant, David B Hanna, Tara Schwartz, Tao Wang, Christopher C Sollecito, Mykhaylo Usyk, Evan Grassi, Fanua Wiek, Lauren St Peter, Wendy S Post, Alan L Landay, Howard N Hodis, Kathleen M Weber, Audrey French, Elizabeth T Golub, Jason Lazar, Deborah Gustafson, Anjali Sharma, Kathryn Anastos, Clary B Clish, Robert D Burk, Robert C Kaplan, Rob Knight, Qibin Qi | Microbiome | 2023-05-27 |
| Responsiveness to Vedolizumab Therapy in Ulcerative Colitis is Associated With Alterations in Immune Cell-Cell Communications. | Paul Hsu, Eunice J Choi, Shefali A Patel, William H Wong, Jocelyn G Olvera, Priscilla Yao, Yi Chia Liu, Matthew S Tsai, Wei Wang, Brigid S Boland, John T Chang | Inflammatory Bowel Diseases | 2023-05-26 |
| M-PAST score is better than MAST score for the diagnosis of active fibrotic NASH. | Kento Imajo, Yusuke Saigusa, Takashi Kobayashi, Koki Nagai, Shinya Nishida, Nobuyoshi Kawamura, Hiroyoshi Doi, Michihiro Iwaki, Asako Nogami, Yasushi Honda, Takaomi Kessoku, Yuji Ogawa, Hiroyuki Kirikoshi, Satoshi Yasuda, Hidenori Toyoda, Hideki Hayashi, Shigehiro Kokubu, Daisuke Utsunomiya, Hirokazu Takahashi, Shinichi Aishima, Beom Kyung Kim, Nobuharu Tamaki, Satoru Saito, Masato Yoneda, Rohit Loomba, Atsushi Nakajima | Hepatology Research : The Official Journal Of The Japan Society Of Hepatology | 2023-05-26 |
| Divergent metabolic programmes control two populations of MAIT cells that protect the lung. | Thomas Riffelmacher, Mallory Paynich Murray, Chantal Wientjens, Shilpi Chandra, Viankail Cedillo-Castelán, Ting-Fang Chou, Sara McArdle, Christopher Dillingham, Jordan Devereaux, Aaron Nilsen, Simon Brunel, David M Lewinsohn, Jeff Hasty, Gregory Seumois, Christopher A Benedict, Pandurangan Vijayanand, Mitchell Kronenberg | Nature Cell Biology | 2023-05-25 |
| You are what you excrete. | Caitlin Guccione, Daniel McDonald, Rebecca Fielding-Miller, Kit Curtius, Rob Knight | Nature Microbiology | 2023-05-25 |
| A Community-Driven Framework to Prioritize the Use of Donated Human Biological Materials in the Context of HIV Cure-Related Research at the End of Life. | Karine Dubé, Thomas J Villa, Jeff Taylor, Andy Kaytes, David J Moore, Susan J Little, Antoine Chaillon, Davey M Smith, Sara Gianella | Pathogens & Immunity | 2023-05-24 |
| Microbiological assessment reveals that Salmonella, Shigella and Campylobacter infections are widespread in HIV infected and uninfected patients with diarrhea in Mozambique. | Delfina Fernandes Hlashwayo, Emília Virgínia Noormahomed, Leonilde Bahule, Constance Benson, Robert T Schooley, Betuel Sigaúque, Kim E Barrett, Custódio Gabriel Bila | PLOS Global Public Health | 2023-05-22 |
| Depth drives the distribution of microbial ecological functions in the coastal western Antarctic Peninsula. | Avishek Dutta, Elizabeth Connors, Rebecca Trinh, Natalia Erazo, Srishti Dasarathy, Hugh W Ducklow, Deborah K Steinberg, Oscar M Schofield, Jeff S Bowman | Frontiers In Microbiology | 2023-05-18 |
| Acute alcohol-associated hepatitis: Latest findings in non-invasive biomarkers and treatment. | Tomoo Yamazaki, Bernd Schnabl | Liver International : Official Journal Of The International Association For The Study Of The Liver | 2023-05-15 |
| Transcriptional programming of CD4 T differentiation in viral infection balances effector- and memory-associated gene expression. | Quynh P Nguyen, Kennidy K Takehara, Tianda Z Deng, Shannon O'Shea, Maximilian Heeg, Kyla D Omilusik, J Justin Milner, Sara Quon, Matthew E Pipkin, Jinyong Choi, Shane Crotty, Ananda W Goldrath | Science Immunology | 2023-05-12 |
| Tryptophan metabolism, gut microbiota, and carotid artery plaque in women with and without HIV infection. | Kai Luo, Zheng Wang, Brandilyn A Peters, David B Hanna, Tao Wang, Christopher C Sollecito, Evan Grassi, Fanua Wiek, Lauren St Peter, Mykhaylo Usyk, Wendy S Post, Alan L Landay, Howard N Hodis, Kathleen M Weber, Audrey French, Elizabeth T Golub, Jason Lazar, Deborah Gustafson, Anjali Sharma, Kathryn Anastos, Clary B Clish, Rob Knight, Robert C Kaplan, Robert D Burk, Qibin Qi | AIDS (London, England) | 2023-05-12 |
| Competition between skin antimicrobial peptides and commensal bacteria in type 2 inflammation enables survival of S. aureus. | Teruaki Nakatsuji, Samantha L Brinton, Kellen J Cavagnero, Alan M O'Neill, Yang Chen, Tatsuya Dokoshi, Anna M Butcher, Olive C Osuoji, Faiza Shafiq, Josh L Espinoza, Christopher L Dupont, Tissa R Hata, Richard L Gallo | Cell Reports | 2023-05-10 |
| Universal gut microbial relationships in the gut microbiome of wild baboons. | Kimberly E Roche, Johannes R Bjork, Mauna R Dasari, Laura Grieneisen, David A W A M Jansen, Trevor J Gould, Laurence R Gesquiere, Luis B Barreiro, Susan C Alberts, Ran Blekhman, Jack A Gilbert, Jenny Tung, Sayan Mukherjee, Elizabeth A Archie | ELife | 2023-05-09 |
| Fecal cytolysin does not predict disease severity in acutely decompensated cirrhosis and acute-on-chronic liver failure. | Phillipp Hartmann, Sonja Lang, Robert Schierwagen, Sabine Klein, Michael Praktiknjo, Jonel Trebicka, Bernd Schnabl | Hepatobiliary & Pancreatic Diseases International : HBPD INT | 2023-05-09 |
| Hepatic stellate cell stearoyl co-A desaturase activates leukotriene B4 receptor 2 - β-catenin cascade to promote liver tumorigenesis. | Sonal Sinha, Satoka Aizawa, Yasuhiro Nakano, Alexander Rialdi, Hye Yeon Choi, Rajan Shrestha, Stephanie Q Pan, Yibu Chen, Meng Li, Audrey Kapelanski-Lamoureux, Gregory Yochum, Linda Sher, Satdarshan Paul Monga, Anthoula Lazaris, Keigo Machida, Michael Karin, Ernesto Guccione, Hidekazu Tsukamoto | Nature Communications | 2023-05-08 |
| E. coli allantoinase is activated by the downstream metabolic enzyme, glycerate kinase, and stabilizes the putative allantoin transporter by direct binding. | Irina A Rodionova, Ali Hosseinnia, Sunyoung Kim, Norman Goodacre, Li Zhang, Zhongge Zhang, Bernhard Palsson, Peter Uetz, Mohan Babu, Milton H Saier | Scientific Reports | 2023-05-05 |
| Herbivorous Fish Microbiome Adaptations to Sulfated Dietary Polysaccharides. | Sheila Podell, Aaron Oliver, Linda Wegley Kelly, Wesley J Sparagon, Alvaro M Plominsky, Robert S Nelson, Lieve M L Laurens, Simona Augyte, Neil A Sims, Craig E Nelson, Eric E Allen | Applied And Environmental Microbiology | 2023-05-03 |
| Evaluation of Autoantibody Binding to Cardiac Tissue in Multisystem Inflammatory Syndrome in Children and COVID-19 Vaccination-Induced Myocarditis. | Harsita Patel, Amalia Sintou, Rasheda A Chowdhury, Stephen Rothery, Alma Octavia Iacob, Sanjay Prasad, Peter P Rainer, Federico Martinón-Torres, Vanessa Sancho-Shimizu, Chisato Shimizu, Kirsten Dummer, Adriana H Tremoulet, Jane C Burns, Susanne Sattler, Michael Levin, | JAMA Network Open | 2023-05-01 |
| Mast cell tolerance in the skin microenvironment to commensal bacteria is controlled by fibroblasts. | Anna Di Nardo, Yu-Ling Chang, Shahrzad Alimohammadi, Kana Masuda-Kuroki, Zhenping Wang, Krishna Sriram, Paul A Insel | Cell Reports | 2023-04-28 |
| Identifying the core genome of the nucleus-forming bacteriophage family and characterization of Erwinia phage RAY. | Amy Prichard, Jina Lee, Thomas G Laughlin, Amber Lee, Kyle P Thomas, Annika E Sy, Tara Spencer, Aileen Asavavimol, Allison Cafferata, Mia Cameron, Nicholas Chiu, Demyan Davydov, Isha Desai, Gabriel Diaz, Melissa Guereca, Kiley Hearst, Leyi Huang, Emily Jacobs, Annika Johnson, Samuel Kahn, Ryan Koch, Adamari Martinez, Meliné Norquist, Tyler Pau, Gino Prasad, Katrina Saam, Milan Sandhu, Angel Jose Sarabia, Siena Schumaker, Aaron Sonin, Ariya Uyeno, Alison Zhao, Kevin D Corbett, Kit Pogliano, Justin Meyer, Julianne H Grose, Elizabeth Villa, Rachel Dutton, Joe Pogliano | Cell Reports | 2023-04-28 |
| Evolutionary constraint and innovation across hundreds of placental mammals. | Matthew J Christmas, Irene M Kaplow, Diane P Genereux, Michael X Dong, Graham M Hughes, Xue Li, Patrick F Sullivan, Allyson G Hindle, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Ana M Breit, Mark Diekhans, Cornelia Fanter, Nicole M Foley, Daniel B Goodman, Linda Goodman, Kathleen C Keough, Bogdan Kirilenko, Amanda Kowalczyk, Colleen Lawless, Abigail L Lind, Jennifer R S Meadows, Lucas R Moreira, Ruby W Redlich, Louise Ryan, Ross Swofford, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Ashley R Brown, Joana Damas, Kaili Fan, John Gatesy, Jenna Grimshaw, Jeremy Johnson, Sergey V Kozyrev, Alyssa J Lawler, Voichita D Marinescu, Kathleen M Morrill, Austin Osmanski, Nicole S Paulat, BaDoi N Phan, Steven K Reilly, Daniel E Schäffer, Cynthia Steiner, Megan A Supple, Aryn P Wilder, Morgan E Wirthlin, James R Xue, , Bruce W Birren, Steven Gazal, Robert M Hubley, Klaus-Peter Koepfli, Tomas Marques-Bonet, Wynn K Meyer, Martin Nweeia, Pardis C Sabeti, Beth Shapiro, Arian F A Smit, Mark S Springer, Emma C Teeling, Zhiping Weng, Michael Hiller, Danielle L Levesque, Harris A Lewin, William J Murphy, Arcadi Navarro, Benedict Paten, Katherine S Pollard, David A Ray, Irina Ruf, Oliver A Ryder, Andreas R Pfenning, Kerstin Lindblad-Toh, Elinor K Karlsson | Science (New York, N.Y.) | 2023-04-28 |
| The contribution of historical processes to contemporary extinction risk in placental mammals. | Aryn P Wilder, Megan A Supple, Ayshwarya Subramanian, Anish Mudide, Ross Swofford, Aitor Serres-Armero, Cynthia Steiner, Klaus-Peter Koepfli, Diane P Genereux, Elinor K Karlsson, Kerstin Lindblad-Toh, Tomas Marques-Bonet, Violeta Munoz Fuentes, Kathleen Foley, Wynn K Meyer, , Oliver A Ryder, Beth Shapiro | Science (New York, N.Y.) | 2023-04-28 |
| Engineering longevity-design of a synthetic gene oscillator to slow cellular aging. | Zhen Zhou, Yuting Liu, Yushen Feng, Stephen Klepin, Lev S Tsimring, Lorraine Pillus, Jeff Hasty, Nan Hao | Science (New York, N.Y.) | 2023-04-27 |
| Gut microbiome and atrial fibrillation-results from a large population-based study. | Joonatan Palmu, Christin S Börschel, Alfredo Ortega-Alonso, Lajos Markó, Michael Inouye, Pekka Jousilahti, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Friederike Gutmann, Dominik Linz, Veikko Salomaa, Aki S Havulinna, Sofia K Forslund, Rob Knight, Leo Lahti, Teemu Niiranen, Renate B Schnabel | EBioMedicine | 2023-04-27 |
| Apoptotic cell death in disease-Current understanding of the NCCD 2023. | Ilio Vitale, Federico Pietrocola, Emma Guilbaud, Stuart A Aaronson, John M Abrams, Dieter Adam, Massimiliano Agostini, Patrizia Agostinis, Emad S Alnemri, Lucia Altucci, Ivano Amelio, David W Andrews, Rami I Aqeilan, Eli Arama, Eric H Baehrecke, Siddharth Balachandran, Daniele Bano, Nickolai A Barlev, Jiri Bartek, Nicolas G Bazan, Christoph Becker, Francesca Bernassola, Mathieu J M Bertrand, Marco E Bianchi, Mikhail V Blagosklonny, J Magarian Blander, Giovanni Blandino, Klas Blomgren, Christoph Borner, Carl D Bortner, Pierluigi Bove, Patricia Boya, Catherine Brenner, Petr Broz, Thomas Brunner, Rune Busk Damgaard, George A Calin, Michelangelo Campanella, Eleonora Candi, Michele Carbone, Didac Carmona-Gutierrez, Francesco Cecconi, Francis K-M Chan, Guo-Qiang Chen, Quan Chen, Youhai H Chen, Emily H Cheng, Jerry E Chipuk, John A Cidlowski, Aaron Ciechanover, Gennaro Ciliberto, Marcus Conrad, Juan R Cubillos-Ruiz, Peter E Czabotar, Vincenzo D'Angiolella, Mads Daugaard, Ted M Dawson, Valina L Dawson, Ruggero De Maria, Bart De Strooper, Klaus-Michael Debatin, Ralph J Deberardinis, Alexei Degterev, Giannino Del Sal, Mohanish Deshmukh, Francesco Di Virgilio, Marc Diederich, Scott J Dixon, Brian D Dynlacht, Wafik S El-Deiry, John W Elrod, Kurt Engeland, Gian Maria Fimia, Claudia Galassi, Carlo Ganini, Ana J Garcia-Saez, Abhishek D Garg, Carmen Garrido, Evripidis Gavathiotis, Motti Gerlic, Sourav Ghosh, Douglas R Green, Lloyd A Greene, Hinrich Gronemeyer, Georg Häcker, György Hajnóczky, J Marie Hardwick, Ygal Haupt, Sudan He, David M Heery, Michael O Hengartner, Claudio Hetz, David A Hildeman, Hidenori Ichijo, Satoshi Inoue, Marja Jäättelä, Ana Janic, Bertrand Joseph, Philipp J Jost, Thirumala-Devi Kanneganti, Michael Karin, Hamid Kashkar, Thomas Kaufmann, Gemma L Kelly, Oliver Kepp, Adi Kimchi, Richard N Kitsis, Daniel J Klionsky, Ruth Kluck, Dmitri V Krysko, Dagmar Kulms, Sharad Kumar, Sergio Lavandero, Inna N Lavrik, John J Lemasters, Gianmaria Liccardi, Andreas Linkermann, Stuart A Lipton, Richard A Lockshin, Carlos López-Otín, Tom Luedde, Marion MacFarlane, Frank Madeo, Walter Malorni, Gwenola Manic, Roberto Mantovani, Saverio Marchi, Jean-Christophe Marine, Seamus J Martin, Jean-Claude Martinou, Pier G Mastroberardino, Jan Paul Medema, Patrick Mehlen, Pascal Meier, Gerry Melino, Sonia Melino, Edward A Miao, Ute M Moll, Cristina Muñoz-Pinedo, Daniel J Murphy, Maria Victoria Niklison-Chirou, Flavia Novelli, Gabriel Núñez, Andrew Oberst, Dimitry Ofengeim, Joseph T Opferman, Moshe Oren, Michele Pagano, Theocharis Panaretakis, Manolis Pasparakis, Josef M Penninger, Francesca Pentimalli, David M Pereira, Shazib Pervaiz, Marcus E Peter, Paolo Pinton, Giovanni Porta, Jochen H M Prehn, Hamsa Puthalakath, Gabriel A Rabinovich, Krishnaraj Rajalingam, Kodi S Ravichandran, Markus Rehm, Jean-Ehrland Ricci, Rosario Rizzuto, Nirmal Robinson, Cecilia M P Rodrigues, Barak Rotblat, Carla V Rothlin, David C Rubinsztein, Thomas Rudel, Alessandro Rufini, Kevin M Ryan, Kristopher A Sarosiek, Akira Sawa, Emre Sayan, Kate Schroder, Luca Scorrano, Federico Sesti, Feng Shao, Yufang Shi, Giuseppe S Sica, John Silke, Hans-Uwe Simon, Antonella Sistigu, Anastasis Stephanou, Brent R Stockwell, Flavie Strapazzon, Andreas Strasser, Liming Sun, Erwei Sun, Qiang Sun, Gyorgy Szabadkai, Stephen W G Tait, Daolin Tang, Nektarios Tavernarakis, Carol M Troy, Boris Turk, Nicoletta Urbano, Peter Vandenabeele, Tom Vanden Berghe, Matthew G Vander Heiden, Jacqueline L Vanderluit, Alexei Verkhratsky, Andreas Villunger, Silvia von Karstedt, Anne K Voss, Karen H Vousden, Domagoj Vucic, Daniela Vuri, Erwin F Wagner, Henning Walczak, David Wallach, Ruoning Wang, Ying Wang, Achim Weber, Will Wood, Takahiro Yamazaki, Huang-Tian Yang, Zahra Zakeri, Joanna E Zawacka-Pankau, Lin Zhang, Haibing Zhang, Boris Zhivotovsky, Wenzhao Zhou, Mauro Piacentini, Guido Kroemer, Lorenzo Galluzzi | Cell Death And Differentiation | 2023-04-26 |
| Sequence-structure-function relationships in the microbial protein universe. | Julia Koehler Leman, Pawel Szczerbiak, P Douglas Renfrew, Vladimir Gligorijevic, Daniel Berenberg, Tommi Vatanen, Bryn C Taylor, Chris Chandler, Stefan Janssen, Andras Pataki, Nick Carriero, Ian Fisk, Ramnik J Xavier, Rob Knight, Richard Bonneau, Tomasz Kosciolek | Nature Communications | 2023-04-26 |
| Susceptibility antibiotic screening reveals high rates of multidrug resistance of Salmonella, Shigella and Campylobacter in HIV infected and uninfected patients from Mozambique. | Delfina F Hlashwayo, Emília V Noormahomed, Leonilde Bahule, Constance A Benson, Robert T Schooley, Betuel Sigaúque, Kim E Barrett, Custódio G Bila | BMC Infectious Diseases | 2023-04-21 |
| Preface: Gamma-Delta T Cells in Inflammation Part 1. | Benjamin Bonavida, Vipin Kumar | Critical Reviews In Immunology | 2023-04-21 |
| Crosstalk between skin microbiota and immune system in health and disease. | Qian Liu, Ryan Ranallo, Carmen Rios, Elizabeth A Grice, Kyung Moon, Richard L Gallo | Nature Immunology | 2023-04-20 |
| Kernel-based genetic association analysis for microbiome phenotypes identifies host genetic drivers of beta-diversity. | Hongjiao Liu, Wodan Ling, Xing Hua, Jee-Young Moon, Jessica S Williams-Nguyen, Xiang Zhan, Anna M Plantinga, Ni Zhao, Angela Zhang, Rob Knight, Qibin Qi, Robert D Burk, Robert C Kaplan, Michael C Wu | Microbiome | 2023-04-20 |
| Safety and Efficacy of Combination SARS-CoV-2 Neutralizing Monoclonal Antibodies Amubarvimab Plus Romlusevimab in Nonhospitalized Patients With COVID-19. | Teresa H Evering, Kara W Chew, Mark J Giganti, Carlee Moser, Mauricio Pinilla, David Alain Wohl, Judith S Currier, Joseph J Eron, Arzhang Cyrus Javan, Rachel Bender Ignacio, David Margolis, Qing Zhu, Ji Ma, Lijie Zhong, Li Yan, Ulises D'Andrea Nores, Keila Hoover, Bharat Mocherla, Manish C Choudhary, Rinki Deo, Justin Ritz, William A Fischer, Courtney V Fletcher, Jonathan Z Li, Michael D Hughes, Davey Smith, Eric S Daar, | Annals Of Internal Medicine | 2023-04-18 |
| Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments. | Alexander B Chase, Alexander Bogdanov, Alyssa M Demko, Paul R Jensen | The ISME Journal | 2023-04-15 |
| Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome. | Bryn C Taylor, Mohammadsobhan Sheikh Andalibi, Stephen Wandro, Kelly C Weldon, Gregory D Sepich-Poore, Carolina S Carpenter, Serena Fraraccio, Donald Franklin, Jennifer E Iudicello, Scott Letendre, Sara Gianella, Igor Grant, Ronald J Ellis, Robert K Heaton, Rob Knight, Austin D Swafford | Microorganisms | 2023-04-14 |
| Toll-like receptor 2 activation in monocytes contributes to systemic inflammation and alcohol-associated liver disease in humans. | Luca Maccioni, Joyce Kasavuli, Sophie Leclercq, Boris Pirlot, Géraldine Laloux, Yves Horsmans, Isabelle Leclercq, Bernd Schnabl, Peter Stärkel | Hepatology Communications | 2023-04-14 |
| An integrated view of anti-inflammatory and antifibrotic targets for the treatment of NASH. | Frank Tacke, Tobias Puengel, Rohit Loomba, Scott L Friedman | Journal Of Hepatology | 2023-04-13 |
| Role of the Microbiome in Gut-Heart-Kidney Cross Talk. | Griet Glorieux, Sanjay K Nigam, Raymond Vanholder, Francis Verbeke | Circulation Research | 2023-04-13 |
| Chromosomal fragile site breakage by EBV-encoded EBNA1 at clustered repeats. | Julia Su Zhou Li, Ammal Abbasi, Dong Hyun Kim, Scott M Lippman, Ludmil B Alexandrov, Don W Cleveland | Nature | 2023-04-12 |
| DNA architectural protein CTCF facilitates subset-specific chromatin interactions to limit the formation of memory CD8 T cells. | Sara Quon, Bingfei Yu, Brendan E Russ, Kirill Tsyganov, Hongtuyet Nguyen, Clara Toma, Maximilian Heeg, James D Hocker, J Justin Milner, Shane Crotty, Matthew E Pipkin, Stephen J Turner, Ananda W Goldrath | Immunity | 2023-04-10 |
| Part 2 Preface: Immune Checkpoint Inhibitors and Adverse Autoimmune Manifestations. | Vipin Kumar, Benjamin Bonavida | Critical Reviews In Immunology | 2023-04-10 |
| Preface Part 1: Immune Checkpoint Inhibitors and Autoimmunity. | Vipin Kumar, Benjamin Bonavida | Critical Reviews In Immunology | 2023-04-07 |
| Review of Major Social Determinants of Health in Schizophrenia-Spectrum Psychotic Disorders: III. Biology. | Dilip V Jeste, Dolores Malaspina, Kara Bagot, Deanna M Barch, Steve Cole, Faith Dickerson, Amanda Dilmore, Charles L Ford, Nicole R Karcher, Joan Luby, Tarek Rajji, Adrián A Pinto-Tomas, Larry J Young | Schizophrenia Bulletin | 2023-04-06 |
| Effects of a ketogenic and low-fat diet on the human metabolome, microbiome, and foodome in adults at risk for Alzheimer's disease. | Amanda Hazel Dilmore, Cameron Martino, Bryan J Neth, Kiana A West, Jasmine Zemlin, Gibraan Rahman, Morgan Panitchpakdi, Michael J Meehan, Kelly C Weldon, Colette Blach, Leyla Schimmel, Rima Kaddurah-Daouk, Pieter C Dorrestein, Rob Knight, Suzanne Craft, | Alzheimer's & Dementia : The Journal Of The Alzheimer's Association | 2023-04-05 |
| The Escherichia coli Fur pan-regulon has few conserved but many unique regulatory targets. | Ye Gao, Ina Bang, Yara Seif, Donghyuk Kim, Bernhard O Palsson | Nucleic Acids Research | 2023-04-05 |
| Evolving approaches to profiling the microbiome in skin disease. | Yang Chen, Rob Knight, Richard L Gallo | Frontiers In Immunology | 2023-04-04 |
| Whole-genome sequences from wild-type and laboratory-evolved strains define the alleleome and establish its hallmarks. | Edward Alexander Catoiu, Patrick Phaneuf, Jonathan Monk, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2023-04-03 |
| Safety and Efficacy of Combined Tixagevimab and Cilgavimab Administered Intramuscularly or Intravenously in Nonhospitalized Patients With COVID-19: 2 Randomized Clinical Trials. | Rachel A Bender Ignacio, Kara W Chew, Carlee Moser, Judith S Currier, Joseph J Eron, Arzhang Cyrus Javan, Mark J Giganti, Evgenia Aga, Michael Gibbs, Hervé Tchouakam Kouekam, Eva Johnsson, Mark T Esser, Keila Hoover, Gene Neytman, Matthew Newell, Eric S Daar, William Fischer, Courtney V Fletcher, Jonathan Z Li, Alexander L Greninger, Robert W Coombs, Michael D Hughes, Davey Smith, David Alain Wohl, | JAMA Network Open | 2023-04-03 |
| A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century. | Erhard Bremer, Alexandra Calteau, Antoine Danchin, Colin Harwood, John D Helmann, Claudine Médigue, Bernhard O Palsson, Agnieszka Sekowska, David Vallenet, Abril Zuniga, Cristal Zuniga | Microbial Biotechnology | 2023-04-01 |
| Transmissible SARS-CoV-2 variants with resistance to clinical protease inhibitors. | Seyed Arad Moghadasi, Emmanuel Heilmann, Ahmed Magdy Khalil, Christina Nnabuife, Fiona L Kearns, Chengjin Ye, Sofia N Moraes, Francesco Costacurta, Morgan A Esler, Hideki Aihara, Dorothee von Laer, Luis Martinez-Sobrido, Timothy Palzkill, Rommie E Amaro, Reuben S Harris | Science Advances | 2023-03-29 |
| Global epidemiology of cirrhosis - aetiology, trends and predictions. | Daniel Q Huang, Norah A Terrault, Frank Tacke, Lise Lotte Gluud, Marco Arrese, Elisabetta Bugianesi, Rohit Loomba | Nature Reviews. Gastroenterology & Hepatology | 2023-03-28 |
| The transcription factor Mef2d regulates B:T synapse-dependent GC-T differentiation and IL-21-mediated humoral immunity. | Ye-Ji Kim, Jeein Oh, Soohan Jung, Chan Johng Kim, Jinyong Choi, Yoon Kyung Jeon, Hyun Jik Kim, Ji-Won Kim, Chang-Hee Suh, Yoontae Lee, Sin-Hyeog Im, Shane Crotty, Youn Soo Choi | Science Immunology | 2023-03-24 |
| Reconstructing the landscape of gut microbial species across 29,000 diverse individuals. | Igor Segota, Jeramie D Watrous, Edward D Kantz, Shriram Nallamshetty, Saumya Tiwari, Susan Cheng, Mohit Jain, Tao Long | Nucleic Acids Research | 2023-03-24 |
| Mitigating the risk of antimalarial resistance via covalent dual-subunit inhibition of the Plasmodium proteasome. | Ioanna Deni, Barbara H Stokes, Kurt E Ward, Kate J Fairhurst, Charisse Flerida A Pasaje, Tomas Yeo, Shirin Akbar, Heekuk Park, Ryan Muir, Daniella S Bick, Wenhu Zhan, Hao Zhang, Yi Jing Liu, Caroline L Ng, Laura A Kirkman, Jehad Almaliti, Alexandra E Gould, Maëlle Duffey, Anthony J O'Donoghue, Anne-Catrin Uhlemann, Jacquin C Niles, Paula C A da Fonseca, William H Gerwick, Gang Lin, Matthew Bogyo, David A Fidock | Cell Chemical Biology | 2023-03-22 |
| The Underappreciated Role of Secretory IgA in IBD. | Giorgos Bamias, Konstantina Kitsou, Jesús Rivera-Nieves | Inflammatory Bowel Diseases | 2023-03-21 |
| Synchronization of the circadian clock to the environment tracked in real time. | Mingxu Fang, Archana G Chavan, Andy LiWang, Susan S Golden | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2023-03-20 |
| Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria. | Andre Mu, William P Klare, Sarah L Baines, C N Ignatius Pang, Romain Guérillot, Nichaela Harbison-Price, Nadia Keller, Jonathan Wilksch, Nguyen Thi Khanh Nhu, Minh-Duy Phan, Bernhard Keller, Brunda Nijagal, Dedreia Tull, Saravanan Dayalan, Hwa Huat Charlie Chua, Dominik Skoneczny, Jason Koval, Abderrahman Hachani, Anup D Shah, Nitika Neha, Snehal Jadhav, Sally R Partridge, Amanda J Cork, Kate Peters, Olivia Bertolla, Stephan Brouwer, Steven J Hancock, Laura Álvarez-Fraga, David M P De Oliveira, Brian Forde, Ashleigh Dale, Warasinee Mujchariyakul, Calum J Walsh, Ian Monk, Anna Fitzgerald, Mabel Lum, Carolina Correa-Ospina, Piklu Roy Chowdhury, Robert G Parton, James De Voss, James Beckett, Francois Monty, Jessica McKinnon, Xiaomin Song, John R Stephen, Marie Everest, Matt I Bellgard, Matthew Tinning, Michael Leeming, Dianna Hocking, Leila Jebeli, Nancy Wang, Nouri Ben Zakour, Serhat A Yasar, Stefano Vecchiarelli, Tonia Russell, Thiri Zaw, Tyrone Chen, Don Teng, Zena Kassir, Trevor Lithgow, Adam Jenney, Jason N Cole, Victor Nizet, Tania C Sorrell, Anton Y Peleg, David L Paterson, Scott A Beatson, Jemma Wu, Mark P Molloy, Anna E Syme, Robert J A Goode, Adam A Hunter, Grahame Bowland, Nicholas P West, Marc R Wilkins, Steven P Djordjevic, Mark R Davies, Torsten Seemann, Benjamin P Howden, Dana Pascovici, Sonika Tyagi, Ralf B Schittenhelm, David P De Souza, Malcolm J McConville, Jonathan R Iredell, Stuart J Cordwell, Richard A Strugnell, Timothy P Stinear, Mark A Schembri, Mark J Walker | Nature Communications | 2023-03-18 |
| The Evolution of Assessing Central Nervous System Complications in Human Immunodeficiency Virus: Where Do We Go From Here? | Roger C McIntosh, Uraina S Clark, Mariana Cherner, Lucette A Cysique, Robert K Heaton, Jules Levin, Robert H Remien, April Thames, David J Moore, Leah H Rubin | The Journal Of Infectious Diseases | 2023-03-17 |
| Optimization of nutrient utilization efficiency and productivity for algal cultures under light and dark cycles using genome-scale model process control. | Chien-Ting Li, Richard Eng, Cristal Zuniga, Kai-Wen Huang, Yiqun Chen, Karsten Zengler, Michael J Betenbaugh | NPJ Systems Biology And Applications | 2023-03-15 |
| Characterization of SARS-CoV-2 Distribution and Microbial Succession in a Clinical Microbiology Testing Facility during the SARS-CoV-2 Pandemic. | Govind Prasad Sah, Grace Kovalick, Jessica Chopyk, Peiting Kuo, Lina Huang, Pooja Ghatbale, Promi Das, Susan Realegeno, Rob Knight, Jack A Gilbert, David T Pride | Microbiology Spectrum | 2023-03-14 |
| Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut. | Matthew H Foley, Morgan E Walker, Allison K Stewart, Sarah O'Flaherty, Emily C Gentry, Shakshi Patel, Violet V Beaty, Garrison Allen, Meichen Pan, Joshua B Simpson, Caroline Perkins, Molly E Vanhoy, Michael K Dougherty, Sarah K McGill, Ajay S Gulati, Pieter C Dorrestein, Erin S Baker, Matthew R Redinbo, Rodolphe Barrangou, Casey M Theriot | Nature Microbiology | 2023-03-13 |
| Effectiveness of BNT162b2 and CoronaVac vaccines against omicron in children aged 5 to 11 years. | Eduardo A Oliveira, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Ludmila R Silva, Daniella B Martelli, Clara C Pinhati, Hercílio Martelli-Júnior | World Journal Of Pediatrics : WJP | 2023-03-13 |
| Shared genetic architecture between attention-deficit/hyperactivity disorder and lifespan. | Laura Vilar-Ribó, Judit Cabana-Domínguez, Lourdes Martorell, Josep Antoni Ramos-Quiroga, Sandra Sanchez-Roige, Abraham A Palmer, Elisabet Vilella, Marta Ribasés, Gerard Muntané, María Soler Artigas | Neuropsychopharmacology : Official Publication Of The American College Of Neuropsychopharmacology | 2023-03-11 |
| Association of the gut microbiome with kidney function and damage in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL). | Brandilyn A Peters, Qibin Qi, Mykhaylo Usyk, Martha L Daviglus, Jianwen Cai, Nora Franceschini, James P Lash, Marc D Gellman, Bing Yu, Eric Boerwinkle, Rob Knight, Robert D Burk, Robert C Kaplan | Gut Microbes | 2023-03-08 |
| Captive and urban environments are associated with distinct gut microbiota in deer mice (). | Jessica Diaz, Kent H Redford, Aspen T Reese | Biology Letters | 2023-03-08 |
| Engineered bacteria producing aryl-hydrocarbon receptor agonists protect against ethanol-induced liver disease in mice. | Tetsuya Kouno, Suling Zeng, Yanhan Wang, Yi Duan, Sonja Lang, Bei Gao, Phillipp Hartmann, Noemí Cabré, Cristina Llorente, Chloé Galbert, Patrick Emond, Harry Sokol, Michael James, Chun Cheih Chao, Jian-Rong Gao, Mylene Perreault, David L Hava, Bernd Schnabl | Alcoholism, Clinical And Experimental Research | 2023-03-05 |
| Plasma metabolites with mechanistic and clinical links to the neurovascular disease cavernous angioma. | Abhinav Srinath, Bingqing Xie, Ying Li, Je Yeong Sone, Sharbel Romanos, Chang Chen, Anukriti Sharma, Sean Polster, Pieter C Dorrestein, Kelly C Weldon, Dorothy DeBiasse, Thomas Moore, Rhonda Lightle, Janne Koskimäki, Dongdong Zhang, Agnieszka Stadnik, Kristina Piedad, Matthew Hagan, Abdallah Shkoukani, Julián Carrión-Penagos, Dehua Bi, Le Shen, Robert Shenkar, Yuan Ji, Ashley Sidebottom, Eric Pamer, Jack A Gilbert, Mark L Kahn, Mark D'Souza, Dinanath Sulakhe, Issam A Awad, Romuald Girard | Communications Medicine | 2023-03-03 |
| The Combined Effects of Cannabis, Methamphetamine, and HIV on Neurocognition. | Jeffrey M Rogers, Jennifer E Iudicello, Maria Cecilia G Marcondes, Erin E Morgan, Mariana Cherner, Ronald J Ellis, Scott L Letendre, Robert K Heaton, Igor Grant | Viruses | 2023-03-03 |
| Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol. | Matthew A Pendergraft, Pedro Belda-Ferre, Daniel Petras, Clare K Morris, Brock A Mitts, Allegra T Aron, MacKenzie Bryant, Tara Schwartz, Gail Ackermann, Greg Humphrey, Ethan Kaandorp, Pieter C Dorrestein, Rob Knight, Kimberly A Prather | Environmental Science & Technology | 2023-03-02 |
| Cell specialization in cyanobacterial biofilm development revealed by expression of a cell-surface and extracellular matrix protein. | Alona Frenkel, Eli Zecharia, Daniel Gómez-Pérez, Eleonora Sendersky, Yevgeni Yegorov, Avi Jacob, Jennifer I C Benichou, York-Dieter Stierhof, Rami Parnasa, Susan S Golden, Eric Kemen, Rakefet Schwarz | NPJ Biofilms And Microbiomes | 2023-03-02 |
| Piezophilic Phenotype Is Growth Condition Dependent and Correlated with the Regulation of Two Sets of ATPase in Deep-Sea Piezophilic Bacterium SS9. | An-Qi Li, Wei-Jia Zhang, Xue-Gong Li, Xu-Chong Bao, Xiao-Qing Qi, Long-Fei Wu, Douglas H Bartlett | Microorganisms | 2023-03-02 |
| Identification of CD8+ T cell - immune cell communications in ileal Crohn's disease. | Han G Duong, Eunice J Choi, Paul Hsu, Natalie R Chiang, Shefali A Patel, Jocelyn G Olvera, Yi Chia Liu, Yun Hsuan Lin, Priscilla Yao, William H Wong, Cynthia S Indralingam, Matthew S Tsai, Brigid S Boland, Wei Wang, John T Chang | Clinical And Translational Gastroenterology | 2023-03-01 |
| Complete Genome Sequence of an Escherichia coli Strain Isolated from Laboratory Mouse Stool for Use as a Chassis for Transgene Delivery to the Murine Microbiome. | Nicole Siguenza, Baylee J Russell, R Alexander Richter, Amir Zarrinpar | Microbiology Resource Announcements | 2023-03-01 |
| Marinobazzanan, a Bazzanane-Type Sesquiterpenoid, Suppresses the Cell Motility and Tumorigenesis in Cancer Cells. | Sultan Pulat, Prima F Hillman, Sojeong Kim, Ratnakar N Asolkar, Haerin Kim, Rui Zhou, İsa Taş, Chathurika D B Gamage, Mücahit Varlı, So-Yeon Park, Sung Chul Park, Inho Yang, Jongheon Shin, Dong-Chan Oh, Hangun Kim, Sang-Jip Nam, William Fenical | Marine Drugs | 2023-02-25 |
| The Gut Microbial Bile Acid Modulation and its Relevance to Digestive Health and Diseases. | Kelly A Fogelson, Pieter C Dorrestein, Amir Zarrinpar, Rob Knight | Gastroenterology | 2023-02-23 |
| Immunoglobulin Y antibodies against cytolysin reduce ethanol-induced liver disease in mice. | Noemí Cabré, Phillipp Hartmann, Cristina Llorente, Tetsuya Kouno, Yanhan Wang, Suling Zeng, Hyun Young Kim, Xinlian Zhang, Tatiana Kisseleva, Subramanian Iyer, Sirisha Kudumala, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2023-02-23 |
| Diet Quality and the Fecal Microbiota in Adults in the American Gut Project. | Alexis D Baldeon, Daniel McDonald, Antonio Gonzalez, Rob Knight, Hannah D Holscher | The Journal Of Nutrition | 2023-02-22 |
| Oral mucosal breaks trigger anti-citrullinated bacterial and human protein antibody responses in rheumatoid arthritis. | R Camille Brewer, Tobias V Lanz, Caryn R Hale, Gregory D Sepich-Poore, Cameron Martino, Austin D Swafford, Thomas S Carroll, Sarah Kongpachith, Lisa K Blum, Serra E Elliott, Nathalie E Blachere, Salina Parveen, John Fak, Vicky Yao, Olga Troyanskaya, Mayu O Frank, Michelle S Bloom, Shaghayegh Jahanbani, Alejandro M Gomez, Radhika Iyer, Nitya S Ramadoss, Orr Sharpe, Sangeetha Chandrasekaran, Lindsay B Kelmenson, Qian Wang, Heidi Wong, Holly L Torres, Mark Wiesen, Dana T Graves, Kevin D Deane, V Michael Holers, Rob Knight, Robert B Darnell, William H Robinson, Dana E Orange | Science Translational Medicine | 2023-02-22 |
| Determination of the Chromatin Openness in Bacterial Genomes. | Mahmoud M Al-Bassam, Karsten Zengler | Methods In Molecular Biology (Clifton, N.J.) | 2023-02-22 |
| Terpene biosynthesis in marine sponge animals. | Kayla Wilson, Tristan de Rond, Immo Burkhardt, Taylor S Steele, Rebecca J B Schäfer, Sheila Podell, Eric E Allen, Bradley S Moore | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2023-02-21 |
| Symptom and Viral Rebound in Untreated SARS-CoV-2 Infection. | Rinki Deo, Manish C Choudhary, Carlee Moser, Justin Ritz, Eric S Daar, David A Wohl, Alexander L Greninger, Joseph J Eron, Judith S Currier, Michael D Hughes, Davey M Smith, Kara W Chew, Jonathan Z Li, | Annals Of Internal Medicine | 2023-02-21 |
| Differences in Bacterial Translocation and Liver Injury in Ethanol Versus Diet-Induced Liver Disease. | Cynthia L Hsu, Yanhan Wang, Yi Duan, Huikuan Chu, Phillipp Hartmann, Cristina Llorente, Rongrong Zhou, Bernd Schnabl | Digestive Diseases And Sciences | 2023-02-20 |
| Microbiome response in an urban river system is dominated by seasonality over wastewater treatment upgrades. | Sho M Kodera, Anukriti Sharma, Cameron Martino, Melissa Dsouza, Mark Grippo, Holly L Lutz, Rob Knight, Jack A Gilbert, Cristina Negri, Sarah M Allard | Environmental Microbiome | 2023-02-19 |
| Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause deadly disease. | Panpan Zhou, Ge Song, Hejun Liu, Meng Yuan, Wan-Ting He, Nathan Beutler, Xueyong Zhu, Longping V Tse, David R Martinez, Alexandra Schäfer, Fabio Anzanello, Peter Yong, Linghang Peng, Katharina Dueker, Rami Musharrafieh, Sean Callaghan, Tazio Capozzola, Oliver Limbo, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, David Nemazee, Joseph G Jardine, Yana Safonova, Bryan Briney, Thomas F Rogers, Ian A Wilson, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees Andrabi | Immunity | 2023-02-16 |
| Using machine learning to improve our understanding of COVID-19 infection in children. | Shraddha Piparia, Andrew Defante, Kelan Tantisira, Julie Ryu | PloS One | 2023-02-15 |
| APOBEC3A Catalytic Inactivity Mutation Induces Tertiary Structure Destabilization. | Katherine F M Jones, Mohamed Shehata, Michael A Carpenter, Rommie E Amaro, Daniel A Harki | ACS Medicinal Chemistry Letters | 2023-02-14 |
| Metagenome-Assembled Genomes from Murine Fecal Microbiomes Dominated by Uncharacterized Bacteria. | Kiarash Rastegar, Scott T Kelley, Varykina G Thackray | Microbiology Resource Announcements | 2023-02-13 |
| Nafcillin Augmentation of Daptomycin and Cathelicidin LL-37 Killing of Methicillin-resistant Staphylococcus epidermidis: Foundations of Successful Therapy of Endocarditis. | Lucy Catteau, Yvan Diaz Iglesias, Hannah Tsunemoto, Joseph Pogliano, Françoise Van Bambeke, Victor Nizet, George Sakoulas | International Journal Of Antimicrobial Agents | 2023-02-10 |
| Diverse Microbial Hot Spring Mat Communities at Black Canyon of the Colorado River. | Ivan J Moreno, Bianca Brahamsha, Mohamed S Donia, Brian Palenik | Microbial Ecology | 2023-02-09 |
| Man vs Microbes - The Race of the Century. | Ericka Anderson, Bipin Nair, Victor Nizet, Geetha Kumar | Journal Of Medical Microbiology | 2023-02-07 |
| Malice in Chains. | Joshua Osowicki, Victor Nizet | The Journal Of Infectious Diseases | 2023-02-07 |
| T Cell Responses to SARS-CoV-2. | Alessandro Sette, John Sidney, Shane Crotty | Annual Review Of Immunology | 2023-02-07 |
| Laboratory evolution reveals general and specific tolerance mechanisms for commodity chemicals. | Rebecca M Lennen, Hyun Gyu Lim, Kristian Jensen, Elsayed T Mohammed, Patrick V Phaneuf, Myung Hyun Noh, Sailesh Malla, Rosa A Börner, Ksenia Chekina, Emre Özdemir, Ida Bonde, Anna Koza, Jérôme Maury, Lasse E Pedersen, Lars Y Schöning, Nikolaus Sonnenschein, Bernhard O Palsson, Alex T Nielsen, Morten O A Sommer, Markus J Herrgård, Adam M Feist | Metabolic Engineering | 2023-02-03 |
| The Molecular Effect of Wearing Silver-Threaded Clothing on the Human Skin. | Alexey V Melnik, Chris Callewaert, Kathleen Dorrestein, Rosie Broadhead, Jeremiah J Minich, Madeleine Ernst, Greg Humphrey, Gail Ackermann, Rob Gathercole, Alexander A Aksenov, Rob Knight, Pieter C Dorrestein | MSystems | 2023-02-01 |
| Acute and Postacute COVID-19 Outcomes Among Immunologically Naive Adults During Delta vs Omicron Waves. | Margaret K Doll, Alpana Waghmare, Antje Heit, Brianna Levenson Shakoor, Louise E Kimball, Nina Ozbek, Rachel L Blazevic, Larry Mose, Jim Boonyaratanakornkit, Terry L Stevens-Ayers, Kevin Cornell, Benjamin D Sheppard, Emma Hampson, Faria Sharmin, Benjamin Goodwin, Jennifer M Dan, Tom Archie, Terry O'Connor, David Heckerman, Frank Schmitz, Michael Boeckh, Shane Crotty | JAMA Network Open | 2023-02-01 |
| A Camptothetin Analog, Topotecan, Promotes HIV Latency via Interference with HIV Transcription and RNA Splicing. | Amey Mukim, Davey M Smith, Savitha Deshmukh, Andrew A Qazi, Nadejda Beliakova-Bethell | Journal Of Virology | 2023-01-31 |
| Qualitative interviews to evaluate content validity of the ACTIV-2 COVID-19 Symptom Diary (ACSD). | Louis S Matza, Katie D Stewart, April N Naegeli, Kayla M Mills, Karin S Coyne, Kara W Chew, Michael D Hughes, Davey M Smith | Journal Of Patient-reported Outcomes | 2023-01-31 |
| Early transcriptional and epigenetic divergence of CD8+ T cells responding to acute versus chronic infection. | Lauren K Quezada, Wenhao Jin, Yi Chia Liu, Eleanor S Kim, Zhaoren He, Cynthia S Indralingam, Tiffani Tysl, Lara Labarta-Bajo, Ellen J Wehrens, Yeara Jo, Katelynn R Kazane, Christopher Hattori, Elina I Zuniga, Gene W Yeo, John T Chang | PLoS Biology | 2023-01-30 |
| Author Correction: Long-primed germinal centres with enduring affinity maturation and clonal migration. | Jeong Hyun Lee, Henry J Sutton, Christopher A Cottrell, Ivy Phung, Gabriel Ozorowski, Leigh M Sewall, Rebecca Nedellec, Catherine Nakao, Murillo Silva, Sara T Richey, Jonathan L Torres, Wen-Hsin Lee, Erik Georgeson, Michael Kubitz, Sam Hodges, Tina-Marie Mullen, Yumiko Adachi, Kimberly M Cirelli, Amitinder Kaur, Carolina Allers, Marissa Fahlberg, Brooke F Grasperge, Jason P Dufour, Faith Schiro, Pyone P Aye, Oleksandr Kalyuzhniy, Alessia Liguori, Diane G Carnathan, Guido Silvestri, Xiaoying Shen, David C Montefiori, Ronald S Veazey, Andrew B Ward, Lars Hangartner, Dennis R Burton, Darrell J Irvine, William R Schief, Shane Crotty | Nature | 2023-01-30 |
| Enhancer-instructed epigenetic landscape and chromatin compartmentalization dictate a primary antibody repertoire protective against specific bacterial pathogens. | E Mauricio Barajas-Mora, Lindsay Lee, Hanbin Lu, J Andrés Valderrama, Elisabet Bjanes, Victor Nizet, Ann J Feeney, Ming Hu, Cornelis Murre | Nature Immunology | 2023-01-30 |
| Malassezia restricta promotes alcohol-induced liver injury. | Suling Zeng, Phillipp Hartmann, Minji Park, Yi Duan, Sonja Lang, Cristina Llorente, Yanhan Wang, Noemí Cabré, Derrick E Fouts, Petra Bacher, Won Hee Jung, Peter Stärkel, Bernd Schnabl | Hepatology Communications | 2023-01-27 |
| Insulin-regulated serine and lipid metabolism drive peripheral neuropathy. | Michal K Handzlik, Jivani M Gengatharan, Katie E Frizzi, Grace H McGregor, Cameron Martino, Gibraan Rahman, Antonio Gonzalez, Ana M Moreno, Courtney R Green, Lucie S Guernsey, Terry Lin, Patrick Tseng, Yoichiro Ideguchi, Regis J Fallon, Amandine Chaix, Satchidananda Panda, Prashant Mali, Martina Wallace, Rob Knight, Marin L Gantner, Nigel A Calcutt, Christian M Metallo | Nature | 2023-01-25 |
| Deep-learning optimized DEOCSU suite provides an iterable pipeline for accurate ChIP-exo peak calling. | Ina Bang, Sang-Mok Lee, Seojoung Park, Joon Young Park, Linh Khanh Nong, Ye Gao, Bernhard O Palsson, Donghyuk Kim | Briefings In Bioinformatics | 2023-01-25 |
| Integrated Multi-Cohort Analysis of the Parkinson's Disease Gut Metagenome. | Joseph C Boktor, Gil Sharon, Leo A Verhagen Metman, Deborah A Hall, Phillip A Engen, Zoe Zreloff, Daniel J Hakim, John W Bostick, James Ousey, Danielle Lange, Gregory Humphrey, Gail Ackermann, Martha Carlin, Rob Knight, Ali Keshavarzian, Sarkis K Mazmanian | Movement Disorders : Official Journal Of The Movement Disorder Society | 2023-01-24 |
| Hepatic pIgR-mediated secretion of IgA limits bacterial translocation and prevents ethanol-induced liver disease in mice. | Tim Hendrikx, Sonja Lang, Dragana Rajcic, Yanhan Wang, Sara McArdle, Kenneth Kim, Zbigniew Mikulski, Bernd Schnabl | Gut | 2023-01-23 |
| Comprehensive evaluation of shotgun metagenomics, amplicon sequencing, and harmonization of these platforms for epidemiological studies. | Mykhaylo Usyk, Brandilyn A Peters, Smruthi Karthikeyan, Daniel McDonald, Christopher C Sollecito, Yoshiki Vazquez-Baeza, Justin P Shaffer, Marc D Gellman, Gregory A Talavera, Martha L Daviglus, Bharat Thyagarajan, Rob Knight, Qibin Qi, Robert Kaplan, Robert D Burk | Cell Reports Methods | 2023-01-23 |
| Safety and Efficacy of Ceftolozane/Tazobactam Versus Meropenem in Neonates and Children With Complicated Urinary Tract Infection, Including Pyelonephritis: A Phase 2, Randomized Clinical Trial. | Emmanuel Roilides, Negar Ashouri, John S Bradley, Matthew G Johnson, Julia Lonchar, Feng-Hsiu Su, Jennifer A Huntington, Myra W Popejoy, Mekki Bensaci, Carisa De Anda, Elizabeth G Rhee, Christopher J Bruno | The Pediatric Infectious Disease Journal | 2023-01-23 |
| Predictors of COVID-19 vaccine uptake among people who inject drugs. | Steffanie A Strathdee, Daniela Abramovitz, Carlos F Vera, Irina Artamonova, Thomas L Patterson, Davey M Smith, Antoine Chaillon, Angela R Bazzi | Vaccine | 2023-01-23 |
| A tissue atlas of ulcerative colitis revealing evidence of sex-dependent differences in disease-driving inflammatory cell types and resistance to TNF inhibitor therapy. | Aaron T Mayer, Derek R Holman, Anav Sood, Utkarsh Tandon, Salil S Bhate, Sunil Bodapati, Graham L Barlow, Jeff Chang, Sarah Black, Erica C Crenshaw, Alexander N Koron, Sarah E Streett, Sanjiv S Gambhir, William J Sandborn, Brigid S Boland, Trevor Hastie, Robert Tibshirani, John T Chang, Garry P Nolan, Christian M Schürch, Stephan Rogalla | Science Advances | 2023-01-20 |
| Model-driven experimental design workflow expands understanding of regulatory role of Nac in . | Joon Young Park, Sang-Mok Lee, Ali Ebrahim, Zoe K Scott-Nevros, Jaehyung Kim, Laurence Yang, Anand Sastry, Sang Woo Seo, Bernhard O Palsson, Donghyuk Kim | NAR Genomics And Bioinformatics | 2023-01-20 |
| Detection of Bacteria in Bladder Mucosa of Adult Females. | Alan J Wolfe, David J Rademacher, Carine R Mores, Robert J Evans, Tyler Overholt, Thomas Halverson, Roberto Limeira, Catherine Matthews, Gopal Badlani, Linda Brubaker, Stephen J Walker | The Journal Of Urology | 2023-01-19 |
| Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research. | Jack A Gilbert, Irene L G Newton, Gemma Reguera | MSystems | 2023-01-19 |
| Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research. | Jack A Gilbert, Irene L G Newton, Gemma Reguera | Applied And Environmental Microbiology | 2023-01-19 |
| Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research. | Jack A Gilbert, Irene L G Newton, Gemma Reguera | Microbiology Resource Announcements | 2023-01-19 |
| Association of subjective and objective measures of sleep with gut microbiota composition and diversity in older men: The Osteoporotic Fractures in Men (MrOS) study. | Mehrbod Estaki, Lisa Langsetmo, Michelle Shardell, Anna Mischel, Lingjing Jiang, Yuan Zhong, Christopher Kaufmann, Rob Knight, Katie Stone, Deborah Kado | The Journals Of Gerontology. Series A, Biological Sciences And Medical Sciences | 2023-01-19 |
| Ablation of Adar1 in myeloid cells imprints a global antiviral state in the lung and heightens early immunity against SARS-CoV-2. | Julia Z Adamska, Rohit Verma, Shakti Gupta, Thomas Hagan, Florian Wimmers, Katharine Floyd, Qin Li, Erika V Valore, Yanli Wang, Meera Trisal, José G Vilches-Moure, Shankar Subramaniam, Carl R Walkley, Mehul S Suthar, Jin Billy Li, Bali Pulendran | Cell Reports | 2023-01-17 |
| Cataloging natural sialic acids and other nonulosonic acids (NulOs), and their representation using the Symbol Nomenclature for Glycans. | Amanda L Lewis, Philip Toukach, Evan Bolton, Xi Chen, Martin Frank, Thomas Lütteke, Yuriy Knirel, Ian Schoenhofen, Ajit Varki, Evgeny Vinogradov, Robert J Woods, Natasha Zachara, Jian Zhang, Johannis P Kamerling, Sriram Neelamegham, | Glycobiology | 2023-01-15 |
| Stability of the fecal and oral microbiome over two years at -80°C for multiple collection methods. | Semi Zouiouich, Doratha A Byrd, Xing Hua, Smriti Karwa, Yunhu Wan, Jianxin Shi, Gregory C Humphrey, Gail L Ackermann, Rob Knight, Christian C Abnet, Emily Vogtmann, Rashmi Sinha | Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology | 2023-01-13 |
| Any alcohol use in NAFLD patients is associated with significant changes to the intestinal virome. | Cynthia L Hsu, Sonja Lang, Münevver Demir, Derrick E Fouts, Peter Stärkel, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2023-01-13 |
| Genomic and Spectroscopic Signature-Based Discovery of Natural Macrolactams. | Yern-Hyerk Shin, Ji Hyeon Im, Ilnam Kang, Eunji Kim, Sung Chul Jang, Eunji Cho, Daniel Shin, Sunghoon Hwang, Young Eun Du, Thanh-Hau Huynh, Keebeom Ko, Yoon-Joo Ko, Sang-Jip Nam, Takayoshi Awakawa, Jeeyeon Lee, Suckchang Hong, Ikuro Abe, Bradley S Moore, William Fenical, Yeo Joon Yoon, Jang-Cheon Cho, Sang Kook Lee, Ki-Bong Oh, Dong-Chan Oh | Journal Of The American Chemical Society | 2023-01-12 |
| Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an Model for Cheese Communities. | Christina C Saak, Emily C Pierce, Cong B Dinh, Daniel Portik, Richard Hall, Meredith Ashby, Rachel J Dutton | MSystems | 2023-01-09 |
| Comprehensive whole genome sequencing with hybrid assembly of multi-drug resistant isolate causing cerebral abscess. | Monika Kumaraswamy, Alison Coady, Richard Szubin, Thomas Cs Martin, Bernhard Palsson, Victor Nizet, Jonathan M Monk | Current Research In Microbial Sciences | 2023-01-09 |
| Interactions between perceived stress and microbial-host immune components: two demographically and geographically distinct pregnancy cohorts. | Beatriz Peñalver Bernabé, Pauline M Maki, Janet L Cunningham, Tory Eisenlohr-Moul, Lisa Tussing-Humphreys, Ian M Carroll, Samantha Meltzer-Brody, Jack A Gilbert, Mary Kimmel | Translational Psychiatry | 2023-01-06 |
| Stability, robustness, and containment: preparing synthetic biology for real-world deployment. | Shalni Kumar, Jeff Hasty | Current Opinion In Biotechnology | 2023-01-06 |
| Residential green environments are associated with human milk oligosaccharide diversity and composition. | Mirkka Lahdenperä, Laura Galante, Carlos Gonzales-Inca, Jussi Vahtera, Jaana Pentti, Samuli Rautava, Niina Käyhkö, Chloe Yonemitsu, Julia Gupta, Lars Bode, Hanna Lagström | Scientific Reports | 2023-01-05 |
| Wastewater surveillance for public health. | Joshua I Levy, Kristian G Andersen, Rob Knight, Smruthi Karthikeyan | Science (New York, N.Y.) | 2023-01-05 |
| Natural killer cells for antiviral therapy. | Davey M Smith, Jolie R Schafer, Brian Tullius, Laura Witkam, Silke Paust | Science Translational Medicine | 2023-01-04 |
| Can a mucosal microbiota signature predict disease severity, survival, and disease recurrence in PSC? | Phillipp Hartmann, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2023-01-03 |
| Mutualism-enhancing mutations dominate early adaptation in a two-species microbial community. | Sandeep Venkataram, Huan-Yu Kuo, Erik F Y Hom, Sergey Kryazhimskiy | Nature Ecology & Evolution | 2023-01-02 |
| Cocirculation and replacement of SARS-CoV-2 variants in crowded settings and marginalized populations along the US-Mexico border. | Antoine Chaillon, Ietza Bojorquez, Jaime Sepúlveda, Alicia Yolanda Harvey-Vera, M Gudelia Rangel, Britt Skaathun, Sanjay R Mehta, Caroline Ignacio, Magali Porrachia, Davey M Smith, Steffanie A Strathdee | Salud Publica De Mexico | 2023-01-02 |
| Higher-order interactions shape microbial interactions as microbial community complexity increases. | Manon A Morin, Anneliese J Morrison, Michael J Harms, Rachel J Dutton | Scientific Reports | 2022-12-31 |
| Antiviral therapy use and related outcomes in patients with cancer and viral infections: results from SWOG S1204. | Jessica P Hwang, Kathryn B Arnold, Joseph M Unger, Rashmi Chugh, Monica A Tincopa, Rohit Loomba, Dawn Hershman, Scott D Ramsey | Supportive Care In Cancer : Official Journal Of The Multinational Association Of Supportive Care In Cancer | 2022-12-31 |
| Mitigating Infectious morbidity and Growth deficits in HIV-exposed uninfected infanTs with human Milk Oligosaccharide (MIGH-T MO): a randomised trial protocol. | Rupak Shivakoti, Amy L Slogrove, Barbara Laughton, Mehr Shafiq, Elisma Schoeman, Richard H Glashoff, Cheng-Shiun Leu, Shuang Wang, Lars Bode, Grace Aldrovandi, Louise Kuhn | BMJ Open | 2022-12-30 |
| High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917. | Max van 't Hof, Omkar S Mohite, Jonathan M Monk, Tilmann Weber, Bernhard O Palsson, Morten O A Sommer | BMC Bioinformatics | 2022-12-30 |
| Breastfeeding enrichment of B. longum subsp. infantis mitigates the effect of antibiotics on the microbiota and childhood asthma risk. | Darlene L Y Dai, Charisse Petersen, Courtney Hoskinson, Kate L Del Bel, Allan B Becker, Theo J Moraes, Piushkumar J Mandhane, B Brett Finlay, Elinor Simons, Anita L Kozyrskyj, David M Patrick, Padmaja Subbarao, Lars Bode, Meghan B Azad, Stuart E Turvey | Med (New York, N.Y.) | 2022-12-29 |
| The gut microbiome is a significant risk factor for future chronic lung disease. | Yang Liu, Shu Mei Teo, Guillaume Meric, Howard H F Tang, Qiyun Zhu, Jon G Sanders, Yoshiki Vazquez-Baeza, Karin Verspoor, Ville A Vartiainen, Pekka Jousilahti, Leo Lahti, Teemu Niiranen, Aki S Havulinna, Rob Knight, Veikko Salomaa, Michael Inouye | The Journal Of Allergy And Clinical Immunology | 2022-12-29 |
| SREBP signaling is essential for effective B cell responses. | Wei Luo, Julia Z Adamska, Chunfeng Li, Rohit Verma, Qing Liu, Thomas Hagan, Florian Wimmers, Shakti Gupta, Yupeng Feng, Wenxia Jiang, Jiehao Zhou, Erika Valore, Yanli Wang, Meera Trisal, Shankar Subramaniam, Timothy F Osborne, Bali Pulendran | Nature Immunology | 2022-12-28 |
| In vitro Activity of Ceftaroline Against an International Collection of Kingella kingae Isolates Recovered From Carriers and Invasive Infections. | Joshua M Maher, Rodrigo E Mendes, Holly K Huynh, Eric A Porsch, Joseph W St Geme Iii, Pablo Yagupsky, John Bradley | The Pediatric Infectious Disease Journal | 2022-12-28 |
| Safety and microbiological activity of phage therapy in persons with cystic fibrosis colonized with Pseudomonas aeruginosa: study protocol for a phase 1b/2, multicenter, randomized, double-blind, placebo-controlled trial. | Pranita D Tamma, Maria Souli, Michael Billard, Joseph Campbell, Douglas Conrad, Damon W Ellison, Beth Evans, Scott R Evans, Kerryl E Greenwood-Quaintance, Andrey A Filippov, Holly S Geres, Toshimitsu Hamasaki, Lauren Komarow, Mikeljon P Nikolich, Thomas P Lodise, Seema U Nayak, Carmelle Norice-Tra, Robin Patel, David Pride, Janie Russell, Daria Van Tyne, Henry F Chambers, Vance G FowlerJr, Robert T Schooley, | Trials | 2022-12-28 |
| Quantifying (non)parallelism of gut microbial community change using multivariate vector analysis. | Andreas Härer, Diana J Rennison | Ecology And Evolution | 2022-12-28 |
| Predicting stress response and improved protein overproduction in Bacillus subtilis. | Juan D Tibocha-Bonilla, Cristal Zuñiga, Asama Lekbua, Colton Lloyd, Kevin Rychel, Katie Short, Karsten Zengler | NPJ Systems Biology And Applications | 2022-12-27 |
| The RISE FOR HEALTH study: Methods for in-person assessment and biospecimen collection. | Linda Brubaker, Julia Barthold, Colleen M Fitzgerald, Kimberly Kenton, Cora E Lewis, Jerry Lowder, Emily S Lukacz, Alayne Markland, Melanie Meister, Janis Miller, Elizabeth R Mueller, Kyle Rudser, Ariana L Smith, Diane K Newman, | Neurourology And Urodynamics | 2022-12-27 |
| Minireview: Engineering evolution to reconfigure phenotypic traits in microbes for biotechnological applications. | Kangsan Kim, Minjeong Kang, Sang-Hyeok Cho, Eojin Yoo, Ui-Gi Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | Computational And Structural Biotechnology Journal | 2022-12-24 |
| Association between inflammation, reward processing, and ibuprofen-induced increases of miR-23b in astrocyte-enriched extracellular vesicles: A randomized, placebo-controlled, double-blind, exploratory trial in healthy individuals. | Kaiping Burrows, Leandra K Figueroa-Hall, Ahlam M Alarbi, Jennifer L Stewart, Rayus Kuplicki, Chibing Tan, Bethany N Hannafon, Rajagopal Ramesh, Jonathan Savitz, Sahib Khalsa, T Kent Teague, Victoria B Risbrough, Martin P Paulus | Brain, Behavior, & Immunity - Health | 2022-12-24 |
| SARS-CoV-2 spike conformation determines plasma neutralizing activity elicited by a wide panel of human vaccines. | John E Bowen, Young-Jun Park, Cameron Stewart, Jack T Brown, William K Sharkey, Alexandra C Walls, Anshu Joshi, Kaitlin R Sprouse, Matthew McCallum, M Alejandra Tortorici, Nicholas M Franko, Jennifer K Logue, Ignacio G Mazzitelli, Annalee W Nguyen, Rui P Silva, Yimin Huang, Jun Siong Low, Josipa Jerak, Sasha W Tiles, Kumail Ahmed, Asefa Shariq, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Gyorgy Snell, Christine M Posavad, Najeeha Talat Iqbal, Jorge Geffner, Alessandra Bandera, Andrea Gori, Federica Sallusto, Jennifer A Maynard, Shane Crotty, Wesley C Van Voorhis, Carlos Simmerling, Renata Grifantini, Helen Y Chu, Davide Corti, David Veesler | Science Immunology | 2022-12-23 |
| Healthy dietary patterns are associated with the gut microbiome in the Hispanic Community Health Study/Study of Latinos. | Brandilyn A Peters, Jiaqian Xing, Guo-Chong Chen, Mykhaylo Usyk, Zheng Wang, Amanda C McClain, Bharat Thyagarajan, Martha L Daviglus, Daniela Sotres-Alvarez, Frank B Hu, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi | The American Journal Of Clinical Nutrition | 2022-12-22 |
| Outer Membrane Vesicle-Coated Nanoparticle Vaccine Protects Against Pneumonia and Sepsis. | Elisabet Bjanes, Jiarong Zhou, Tariq Qayum, Nishta Krishnan, Raymond H Zurich, Nitasha D Menon, Alexandria Hoffman, Ronnie H Fang, Liangfang Zhang, Victor Nizet | Advanced Nanobiomed Research | 2022-12-22 |
| Bamlanivimab therapy for acute COVID-19 does not blunt SARS-CoV-2-specific memory T cell responses. | Sydney I Ramirez, Alba Grifoni, Daniela Weiskopf, Urvi M Parikh, Amy Heaps, Farhoud Faraji, Scott F Sieg, Justin Ritz, Carlee Moser, Joseph J Eron, Judith S Currier, Paul Klekotka, Alessandro Sette, David A Wohl, Eric S Daar, Michael D Hughes, Kara W Chew, Davey M Smith, Shane Crotty, | JCI Insight | 2022-12-22 |
| Fungal infections and the fungal microbiome in hepatobiliary disorders. | Phillipp Hartmann, Bernd Schnabl | Journal Of Hepatology | 2022-12-21 |
| The Chromatin Regulator Mll1 Supports T Follicular Helper Cell Differentiation by Controlling Expression of Bcl6, LEF-1, and TCF-1. | Simon Bélanger, Sonya Haupt, Caterina E Faliti, Adam Getzler, Jinyong Choi, Huitian Diao, Pabalu P Karunadharma, Nicholas A Bild, Matthew E Pipkin, Shane Crotty | Journal Of Immunology (Baltimore, Md. : 1950) | 2022-12-20 |
| Conservation of Nematocida microsporidia gene expression and host response in Caenorhabditis nematodes. | Yin Chen Wan, Emily R Troemel, Aaron W Reinke | PloS One | 2022-12-19 |
| ConCISE: Consensus Annotation Propagation of Ion Features in Untargeted Tandem Mass Spectrometry Combining Molecular Networking and Metabolite Structure Prediction. | Zachary A Quinlan, Irina Koester, Allegra T Aron, Daniel Petras, Lihini I Aluwihare, Pieter C Dorrestein, Craig E Nelson, Linda Wegley Kelly | Metabolites | 2022-12-16 |
| Peptide Amphiphile Mediated Co-assembly for Nanoplasmonic Sensing. | Zhicheng Jin, Yi Li, Ke Li, Jiajing Zhou, Justin Yeung, Chuxuan Ling, Wonjun Yim, Tengyu He, Yong Cheng, Ming Xu, Matthew N Creyer, Yu-Ci Chang, Pavla Fajtová, Maurice Retout, Baiyan Qi, Shuzhou Li, Anthony J O'Donoghue, Jesse V Jokerst | Angewandte Chemie (International Ed. In English) | 2022-12-15 |
| Exploring the value of a global gene drive project registry. | Riley I Taitingfong, Cynthia Triplett, Váleri N Vásquez, Ramya M Rajagopalan, Robyn Raban, Aaron Roberts, Gerard Terradas, Bridget Baumgartner, Claudia Emerson, Fred Gould, Fredros Okumu, Cynthia E Schairer, Hervé C Bossin, Leah Buchman, Karl J Campbell, Anna Clark, Jason Delborne, Kevin Esvelt, Joshua Fisher, Robert M Friedman, Gigi Gronvall, Nikos Gurfield, Elizabeth Heitman, Natalie Kofler, Todd Kuiken, Jennifer Kuzma, Pablo Manrique-Saide, John M Marshall, Michael Montague, Amy C Morrison, Chris C Opesen, Ryan Phelan, Antoinette Piaggio, Hector Quemada, Larisa Rudenko, Natéwindé Sawadogo, Robert Smith, Holly Tuten, Anika Ullah, Adam Vorsino, Nikolai Windbichler, Omar S Akbari, Kanya Long, James V Lavery, Sam Weiss Evans, Karen Tountas, Cinnamon S Bloss | Nature Biotechnology | 2022-12-15 |
| Deep Dive into the Long Haul: Analysis of Symptom Clusters and Risk Factors for Post-Acute Sequelae of COVID-19 to Inform Clinical Care. | Nicole H Goldhaber, Jordan N Kohn, William Scott Ogan, Amy Sitapati, Christopher A Longhurst, Angela Wang, Susan Lee, Suzi Hong, Lucy E Horton | International Journal Of Environmental Research And Public Health | 2022-12-15 |
| Potentially probiotic Limosilactobacillus reuteri from human milk strengthens the gut barrier in T84 cells and a murine enteroid model. | Jasia Anjum, Andrew Quach, Preedajit Wongkrasant, Shahid Nazir, Muhammad Tariq, Kim E Barrett, Arsalan Zaidi | Journal Of Applied Microbiology | 2022-12-14 |
| Concurrent validity and reliability of at-home teleneuropsychological evaluations among people with and without HIV. | Maulika Kohli, Arin Fisher, Ni Sun-Suslow, Anne Heaton, Matthew S Dawson, Jennifer Marquie, Donald R Franklin, Maria Marquine, Jennifer E Iudicello, Robert K Heaton, David J Moore | Journal Of The International Neuropsychological Society : JINS | 2022-12-13 |
| Stool multi-omics for the study of host-microbe interactions in inflammatory bowel disease. | Consuelo Sauceda, Charlie Bayne, Khadijeh Sudqi, Antonio Gonzalez, Parambir S Dulai, Rob Knight, David J Gonzalez, Carlos G Gonzalez | Gut Microbes | 2022-12-12 |
| Revealing Causes for False-Positive and False-Negative Calling of Gene Essentiality in Escherichia coli Using Transposon Insertion Sequencing. | Donghui Choe, Uigi Kim, Soonkyu Hwang, Sang Woo Seo, Donghyuk Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | MSystems | 2022-12-12 |
| Comparison of bacterial suppression by phage cocktails, dual-receptor generalists, and coevolutionarily trained phages. | Joshua M Borin, Justin J Lee, Krista R Gerbino, Justin R Meyer | Evolutionary Applications | 2022-12-09 |
| Host-microbiome interactions in the holobiome of Atopic Dermatitis. | Elise Burger, Richard Gallo | The Journal Of Allergy And Clinical Immunology | 2022-12-09 |
| Effects of Variation in Urine Sample Storage Conditions on 16S Urogenital Microbiome Analyses. | Tanya Kumar, MacKenzie Bryant, Kalen Cantrell, Se Jin Song, Daniel McDonald, Helena M Tubb, Sawyer Farmer, Emily S Lukacz, Linda Brubaker, Rob Knight | MSystems | 2022-12-08 |
| Breathing and Tilting: Mesoscale Simulations Illuminate Influenza Glycoprotein Vulnerabilities. | Lorenzo Casalino, Christian Seitz, Julia Lederhofer, Yaroslav Tsybovsky, Ian A Wilson, Masaru Kanekiyo, Rommie E Amaro | ACS Central Science | 2022-12-08 |
| A Reproducible and Tunable Synthetic Soil Microbial Community Provides New Insights into Microbial Ecology. | Joanna Coker, Kateryna Zhalnina, Clarisse Marotz, Deepan Thiruppathy, Megan Tjuanta, Gavin D'Elia, Rodas Hailu, Talon Mahosky, Meagan Rowan, Trent R Northen, Karsten Zengler | MSystems | 2022-12-06 |
| Multicenter Evaluation of the Cepheid Xpert GBS LB XC Test. | Phyu M Thwe, Matthew L Faron, David T Pride, Amorina Cruz, Derek Gerstbrein, Karen A Nahmod, Lindsay Bigham, Xiaotang Du, Xixi Lu, Stephanie Moya, Ping Ren | Journal Of Clinical Microbiology | 2022-12-06 |
| Vaccination induces HIV broadly neutralizing antibody precursors in humans. | David J Leggat, Kristen W Cohen, Jordan R Willis, William J Fulp, Allan C deCamp, Oleksandr Kalyuzhniy, Christopher A Cottrell, Sergey Menis, Greg Finak, Lamar Ballweber-Fleming, Abhinaya Srikanth, Jason R Plyler, Torben Schiffner, Alessia Liguori, Farhad Rahaman, Angela Lombardo, Vincent Philiponis, Rachael E Whaley, Aaron Seese, Joshua Brand, Alexis M Ruppel, Wesley Hoyland, Nicole L Yates, LaTonya D Williams, Kelli Greene, Hongmei Gao, Celia R Mahoney, Martin M Corcoran, Alberto Cagigi, Alison Taylor, David M Brown, David R Ambrozak, Troy Sincomb, Xiaozhen Hu, Ryan Tingle, Erik Georgeson, Saman Eskandarzadeh, Nushin Alavi, Danny Lu, Tina-Marie Mullen, Michael Kubitz, Bettina Groschel, Janine Maenza, Orpheus Kolokythas, Nadia Khati, Jeffrey Bethony, Shane Crotty, Mario Roederer, Gunilla B Karlsson Hedestam, Georgia D Tomaras, David Montefiori, David Diemert, Richard A Koup, Dagna S Laufer, M Juliana McElrath, Adrian B McDermott, William R Schief | Science (New York, N.Y.) | 2022-12-02 |
| Plant and fungal species interactions differ between aboveground and belowground habitats in mountain forests of eastern China. | Teng Yang, Leho Tedersoo, Pamela S Soltis, Douglas E Soltis, Miao Sun, Yuying Ma, Yingying Ni, Xu Liu, Xiao Fu, Yu Shi, Han-Yang Lin, Yun-Peng Zhao, Chengxin Fu, Chuan-Chao Dai, Jack A Gilbert, Haiyan Chu | Science China. Life Sciences | 2022-12-01 |
| Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2022 Recommendations of the International Antiviral Society-USA Panel. | Rajesh T Gandhi, Roger Bedimo, Jennifer F Hoy, Raphael J Landovitz, Davey M Smith, Ellen F Eaton, Clara Lehmann, Sandra A Springer, Paul E Sax, Melanie A Thompson, Constance A Benson, Susan P Buchbinder, Carlos Del Rio, Joseph J Eron, Huldrych F Günthard, Jean-Michel Molina, Donna M Jacobsen, Michael S Saag | JAMA | 2022-12-01 |
| A self-powered ingestible wireless biosensing system for real-time in situ monitoring of gastrointestinal tract metabolites. | Ernesto De la Paz, Nikhil Harsha Maganti, Alexander Trifonov, Itthipon Jeerapan, Kuldeep Mahato, Lu Yin, Thitaporn Sonsa-Ard, Nicolas Ma, Won Jung, Ryan Burns, Amir Zarrinpar, Joseph Wang, Patrick P Mercier | Nature Communications | 2022-12-01 |
| A high-protein diet prevents weight regain. | Amir Zarrinpar | Nature Metabolism | 2022-12-01 |
| ChiMera: an easy to use pipeline for bacterial genome based metabolic network reconstruction, evaluation and visualization. | Gustavo Tamasco, Manish Kumar, Karsten Zengler, Rafael Silva-Rocha, Ricardo Roberto da Silva | BMC Bioinformatics | 2022-11-30 |
| Clinical Outcomes of Omicron Variant (B.1.1.529) Infection in Children and Adolescents Hospitalized With COVID-19 in Brazil With Observational Data on the Efficacy of the Vaccines in Adolescents. | Eduardo A Oliveira, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Ludmila R Silva, Daniella B Martelli, Clara C Pinhati, Hercílio Martelli-Júnior | The Pediatric Infectious Disease Journal | 2022-11-29 |
| Culture-Independent Detection and Identification of Serovars. | Michael A Matthias, Aristea A Lubar, Shalka S Lanka Acharige, Kira L Chaiboonma, Nicholas N Pilau, Alan S Marroquin, Dinesha Jayasundara, Suneth Agampodi, Joseph M Vinetz | Microbiology Spectrum | 2022-11-29 |
| The human pathobiont secreted protease Mfsap1 regulates cell dispersal and exacerbates skin inflammation. | Joleen P Z Goh, Fiorella Ruchti, Si En Poh, Winston L C Koh, Kiat Yi Tan, Yan Ting Lim, Steven T G Thng, Radoslaw M Sobota, Shawn S Hoon, Chenxi Liu, Anthony J O'Donoghue, Salomé LeibundGut-Landmann, Hazel H Oon, Hao Li, Thomas L Dawson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-11-29 |
| Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity. | Justin P Shaffer, Louis-Félix Nothias, Luke R Thompson, Jon G Sanders, Rodolfo A Salido, Sneha P Couvillion, Asker D Brejnrod, Franck Lejzerowicz, Niina Haiminen, Shi Huang, Holly L Lutz, Qiyun Zhu, Cameron Martino, James T Morton, Smruthi Karthikeyan, Mélissa Nothias-Esposito, Kai Dührkop, Sebastian Böcker, Hyun Woo Kim, Alexander A Aksenov, Wout Bittremieux, Jeremiah J Minich, Clarisse Marotz, MacKenzie M Bryant, Karenina Sanders, Tara Schwartz, Greg Humphrey, Yoshiki Vásquez-Baeza, Anupriya Tripathi, Laxmi Parida, Anna Paola Carrieri, Kristen L Beck, Promi Das, Antonio González, Daniel McDonald, Joshua Ladau, Søren M Karst, Mads Albertsen, Gail Ackermann, Jeff DeReus, Torsten Thomas, Daniel Petras, Ashley Shade, James Stegen, Se Jin Song, Thomas O Metz, Austin D Swafford, Pieter C Dorrestein, Janet K Jansson, Jack A Gilbert, Rob Knight, | Nature Microbiology | 2022-11-28 |
| Representative oral microbiome data for the US population: the National Health and Nutrition Examination Survey. | Emily Vogtmann, Anil K Chaturvedi, Martin J Blaser, Nicholas A Bokulich, J Gregory Caporaso, Maura L Gillison, Xing Hua, Autumn G Hullings, Rob Knight, Vaishnavi Purandare, Jianxin Shi, Yunhu Wan, Neal D Freedman, Christian C Abnet | The Lancet. Microbe | 2022-11-28 |
| Characterization of SARS-CoV-2 antibodies in human milk from 21 women with confirmed COVID-19 infection. | Lars Bode, Kerri Bertrand, Julia A Najera, Annalee Furst, Gordon Honerkamp-Smith, Adam D Shandling, Christina D Chambers, David Camerini, Joseph J Campo | Pediatric Research | 2022-11-25 |
| Species Capable of Growth at Pressures Ranging Over 5 Orders of Magnitude, from the Surface of Mars (10 Pa) to Deep Oceans (10 Pa) in the Solar System. | Kathleen M Miller, Flora Tang, Sixuan Li, Kelli K Mullane, Brontë R Shelton, Lam Bui, Douglas H Bartlett, Wayne L Nicholson | Astrobiology | 2022-11-24 |
| Urobiome changes differ based on OAB treatment in adult females. | Thomas Halverson, Elizabeth R Mueller, Linda Brubaker, Alan J Wolfe | International Urogynecology Journal | 2022-11-24 |
| The association between pre-existing asthma and reduced risk of death among children and adolescents hospitalized with COVID-19 in Brazil. | Maria C L Oliveira, Enrico A Colosimo, Mariana A Vasconcelos, Hercílio Martelli-Júnior, Robert H Mak, Ludmila R Silva, Clara C Pinhati, Ana C Simões E Silva, Eduardo A Oliveira | Pediatric Pulmonology | 2022-11-23 |
| Analyzing rare mutations in metagenomes assembled using long and accurate reads. | Marcus W Fedarko, Mikhail Kolmogorov, Pavel A Pevzner | Genome Research | 2022-11-23 |
| Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species. | Jeremiah J Minich, Andreas Härer, Joseph Vechinski, Benjamin W Frable, Zachary R Skelton, Emily Kunselman, Michael A Shane, Daniela S Perry, Antonio Gonzalez, Daniel McDonald, Rob Knight, Todd P Michael, Eric E Allen | Nature Communications | 2022-11-17 |
| NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters. | Tiago F Leão, Mingxun Wang, Ricardo da Silva, Alexey Gurevich, Anelize Bauermeister, Paulo Wender P Gomes, Asker Brejnrod, Evgenia Glukhov, Allegra T Aron, Joris J R Louwen, Hyun Woo Kim, Raphael Reher, Marli F Fiore, Justin J J van der Hooft, Lena Gerwick, William H Gerwick, Nuno Bandeira, Pieter C Dorrestein | PNAS Nexus | 2022-11-16 |
| On the illusion of auxotrophy: met15Δ yeast cells can grow on inorganic sulfur, thanks to the previously uncharacterized homocysteine synthase Yll058w. | S Branden Van Oss, Saurin Bipin Parikh, Nelson Castilho Coelho, Aaron Wacholder, Ivan Belashov, Sara Zdancewicz, Manuel Michaca, Jiazhen Xu, Yun Pyo Kang, Nathan P Ward, Sang Jun Yoon, Katherine M McCourt, Jake McKee, Trey Ideker, Andrew P VanDemark, Gina M DeNicola, Anne-Ruxandra Carvunis | The Journal Of Biological Chemistry | 2022-11-13 |
| Correlation between Serum Steroid Hormones and Gut Microbiota in Patients with Alcohol-Associated Liver Disease. | Bei Gao, Yixin Zhu, Weishou Shen, Peter Stärkel, Bernd Schnabl | Metabolites | 2022-11-13 |
| A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice. | Reem Abdel-Haq, Johannes C M Schlachetzki, Joseph C Boktor, Thaisa M Cantu-Jungles, Taren Thron, Mengying Zhang, John W Bostick, Tahmineh Khazaei, Sujatha Chilakala, Livia H Morais, Greg Humphrey, Ali Keshavarzian, Jonathan E Katz, Matthew Thomson, Rob Knight, Viviana Gradinaru, Bruce R Hamaker, Christopher K Glass, Sarkis K Mazmanian | ELife | 2022-11-08 |
| Spacer Matters: All-Peptide-Based Ligand for Promoting Interfacial Proteolysis and Plasmonic Coupling. | Zhicheng Jin, Chuxuan Ling, Yi Li, Jiajing Zhou, Ke Li, Wonjun Yim, Justin Yeung, Yu-Ci Chang, Tengyu He, Yong Cheng, Pavla Fajtová, Maurice Retout, Anthony J O'Donoghue, Jesse V Jokerst | Nano Letters | 2022-11-08 |
| RISE FOR HEALTH: Rationale and protocol for a prospective cohort study of bladder health in women. | Ariana L Smith, Kyle Rudser, Bernard L Harlow, Gerald McGwin, Julia Barthold, Sonya S Brady, Linda Brubaker, Shayna D Cunningham, James W Griffith, Kim Kenton, Heather Klusaritz, Cora E Lewis, Emily S Lukacz, Julia Maki, Alayne D Markland, Elizabeth R Mueller, Diane K Newman, Jesse Nodora, Leslie M Rickey, Todd Rockwood, Melissa Simon, Jean F Wyman, Siobhan Sutcliffe, | Neurourology And Urodynamics | 2022-11-02 |
| Mucosal and Systemic Responses to Severe Acute Respiratory Syndrome Coronavirus 2 Vaccination Determined by Severity of Primary Infection. | Mohammad M Sajadi, Amber Myers, James Logue, Saman Saadat, Narjes Shokatpour, James Quinn, Michelle Newman, Meagan Deming, Zahra Rikhtegaran Tehrani, Laurence S Magder, Maryam Karimi, Abdolrahim Abbasi, Mike Shlyak, Lauren Baracco, Matthew B Frieman, Shane Crotty, Anthony D Harris | MSphere | 2022-11-02 |
| Coordination of CcpA and CodY Regulators in Staphylococcus aureus USA300 Strains. | Saugat Poudel, Ying Hefner, Richard Szubin, Anand Sastry, Ye Gao, Victor Nizet, Bernhard O Palsson | MSystems | 2022-11-02 |
| Pan-Genome Analysis of Transcriptional Regulation in Six Salmonella enterica Serovar Typhimurium Strains Reveals Their Different Regulatory Structures. | Yuan Yuan, Yara Seif, Kevin Rychel, Reo Yoo, Siddharth Chauhan, Saugat Poudel, Tahani Al-Bulushi, Bernhard O Palsson, Anand V Sastry | MSystems | 2022-11-01 |
| synDNA-a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing. | Livia S Zaramela, Megan Tjuanta, Oriane Moyne, Maxwell Neal, Karsten Zengler | MSystems | 2022-11-01 |
| Sex, puberty, and the gut microbiome. | Laura Sisk-Hackworth, Scott T Kelley, Varykina G Thackray | Reproduction (Cambridge, England) | 2022-11-01 |
| Drug transporters OAT1 and OAT3 have specific effects on multiple organs and gut microbiome as revealed by contextualized metabolic network reconstructions. | Neema Jamshidi, Sanjay K Nigam | Scientific Reports | 2022-10-31 |
| The rapidly evolving monkeypox epidemic: A call to action to leave no one behind. | Steffanie A Strathdee, Davey M Smith, Megan Halbrook, Placide Mbala-Kingebeni, Shira Abeles, Francesca Torriani, Anne Rimoin | PLoS Medicine | 2022-10-31 |
| Sarcopenia-related gut microbial changes are associated with the risk of complications in people with cirrhosis. | Pei-Chang Lee, Kuei-Chuan Lee, Tsung-Chieh Yang, Hsiao-Sheng Lu, Tsung-Yi Cheng, Yu-Jen Chen, Jen-Jie Chiou, Chi-Wei Huang, Ueng-Cheng Yang, Elise Chia-Hui Tan, Shih-Hsuan Chou, Yu-Lun Kuo, Bernd Schnabl, Yi-Hsiang Huang, Ming-Chih Hou | JHEP Reports : Innovation In Hepatology | 2022-10-29 |
| Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq. | Sara E Vazquez, Sabrina A Mann, Aaron Bodansky, Andrew F Kung, Zoe Quandt, Elise M N Ferré, Nils Landegren, Daniel Eriksson, Paul Bastard, Shen-Ying Zhang, Jamin Liu, Anthea Mitchell, Irina Proekt, David Yu, Caleigh Mandel-Brehm, Chung-Yu Wang, Brenda Miao, Gavin Sowa, Kelsey Zorn, Alice Y Chan, Veronica M Tagi, Chisato Shimizu, Adriana Tremoulet, Kara Lynch, Michael R Wilson, Olle Kämpe, Kerry Dobbs, Ottavia M Delmonte, Rosa Bacchetta, Luigi D Notarangelo, Jane C Burns, Jean-Laurent Casanova, Michail S Lionakis, Troy R Torgerson, Mark S Anderson, Joseph L DeRisi | ELife | 2022-10-27 |
| The Vi Capsular Polysaccharide of Salmonella Typhi Promotes Macrophage Phagocytosis by Binding the Human C-Type Lectin DC-SIGN. | Lillian F Zhang, Bernd Lepenies, Sayuri Nakamae, Briana M Young, Renato L Santos, Manuela Raffatellu, Brian A Cobb, Hirotaka Hiyoshi, Andreas J Bäumler | MBio | 2022-10-26 |
| Emergence of SARS-CoV-2 escape mutations during Bamlanivimab therapy in a phase II randomized clinical trial. | Manish C Choudhary, Kara W Chew, Rinki Deo, James P Flynn, James Regan, Charles R Crain, Carlee Moser, Michael D Hughes, Justin Ritz, Ruy M Ribeiro, Ruian Ke, Joan A Dragavon, Arzhang Cyrus Javan, Ajay Nirula, Paul Klekotka, Alexander L Greninger, Courtney V Fletcher, Eric S Daar, David A Wohl, Joseph J Eron, Judith S Currier, Urvi M Parikh, Scott F Sieg, Alan S Perelson, Robert W Coombs, Davey M Smith, Jonathan Z Li, | Nature Microbiology | 2022-10-26 |
| Live Biotherapeutic Products as Cancer Treatments. | Arianna Brevi, Amir Zarrinpar | Cancer Research | 2022-10-24 |
| Abrogation of neutrophil inflammatory pathways and potential reduction of neutrophil-related factors in COVID-19 by intravenous immunoglobulin. | Jorge Adrian Masso-Silva, George Sakoulas, Jarod Olay, Victoria Groysberg, Matthew Geriak, Victor Nizet, Laura E Crotty Alexander, Angela Meier | Frontiers In Immunology | 2022-10-20 |
| Lessons for Understanding Central Nervous System HIV Reservoirs from the Last Gift Program. | Patricia K Riggs, Antoine Chaillon, Guochun Jiang, Scott L Letendre, Yuyang Tang, Jeff Taylor, Andrew Kaytes, Davey M Smith, Karine Dubé, Sara Gianella | Current HIV/AIDS Reports | 2022-10-19 |
| Anthrax Meningoencephalitis and Intracranial Hemorrhage. | Nicholas Caffes, Katherine Hendricks, John S Bradley, Nancy A Twenhafel, J Marc Simard | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-10-17 |
| Systematic Review of Hospital Treatment Outcomes for Naturally Acquired and Bioterrorism-Related Anthrax, 1880-2018. | Marissa K Person, Rachel Cook, John S Bradley, Nathaniel Hupert, William A Bower, Katherine Hendricks | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-10-17 |
| Inexpensive, Accurate, and Stable Method to Quantitate Blood Alanine Aminotransferase (ALT) Levels. | Phillipp Hartmann, Bernd Schnabl | Methods And Protocols | 2022-10-14 |
| Experimental Evolution Reveals Unifying Systems-Level Adaptations but Diversity in Driving Genotypes. | Erol S Kavvas, Christopher P Long, Anand Sastry, Saugat Poudel, Maciek R Antoniewicz, Yang Ding, Elsayed T Mohamed, Richard Szubin, Jonathan M Monk, Adam M Feist, Bernhard O Palsson | MSystems | 2022-10-13 |
| Illuminating the dark metabolome of Pseudo-nitzschia-microbiome associations. | Irina Koester, Zachary A Quinlan, Louis-Félix Nothias, Margot E White, Ariel Rabines, Daniel Petras, John K Brunson, Kai Dührkop, Marcus Ludwig, Sebastian Böcker, Farooq Azam, Andrew E Allen, Pieter C Dorrestein, Lihini I Aluwihare | Environmental Microbiology | 2022-10-12 |
| Allergen Content and Protease Activity in Milk Feeds from Mothers of Preterm Infants. | Kathleen Luskin, Diba Mortazavi, Sherry Bai-Tong, Kerri Bertrand, Christina Chambers, Keriann Schulkers-Escalante, Alla Ahmad, Stephanie Luedtke, Anthony J O'Donoghue, Majid Ghassemian, Bob Geng, Sandra L Leibel, Sydney A Leibel | Breastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine | 2022-10-12 |
| Transcriptomic profiling of sporadic Alzheimer's disease patients. | Andrew B Caldwell, Balaji G Anantharaman, Srinivasan Ramachandran, Phuong Nguyen, Qing Liu, Ivy Trinh, Douglas R Galasko, Paula A Desplats, Steven L Wagner, Shankar Subramaniam | Molecular Brain | 2022-10-12 |
| OAT, OATP, and MRP Drug Transporters and the Remote Sensing and Signaling Theory. | Sanjay K Nigam, Jeffry C Granados | Annual Review Of Pharmacology And Toxicology | 2022-10-07 |
| Regulatory T-cells and GARP expression are decreased in exercise-associated chikungunya viral arthritis flares. | John E Dobbs, Sarah R Tritsch, Liliana Encinales, Andres Cadena, Karol Suchowiecki, Gary Simon, Christopher Mores, Silvana Insignares, Vierys Patricia Villamil Orozco, Mirna Ospino, Lil Avendano Echavez, Carlos Andres Herrera Gomez, Yerlenis Galvis Crespo, Richard Amdur, Alberto David Cabana Jimenez, Carlos Alberto Perez Hernandez, Jennifer Carolina Martinez Zapata, Alfonso Sucerquia Hernandez, Paula Bruges Silvera, Wendy Rosales, Evelyn Mendoza, Estefanie Osorio-Llanes, Jairo Castellar, Dennys Jimenez, Dan M Cooper, Gary S Firestein, Karen Martins, Aileen Y Chang | Frontiers In Immunology | 2022-10-07 |
| Electrochemical potential enables dormant spores to integrate environmental signals. | Kaito Kikuchi, Leticia Galera-Laporta, Colleen Weatherwax, Jamie Y Lam, Eun Chae Moon, Emmanuel A Theodorakis, Jordi Garcia-Ojalvo, Gürol M Süel | Science (New York, N.Y.) | 2022-10-06 |
| Opposing roles of hepatic stellate cell subpopulations in hepatocarcinogenesis. | Aveline Filliol, Yoshinobu Saito, Ajay Nair, Dianne H Dapito, Le-Xing Yu, Aashreya Ravichandra, Sonakshi Bhattacharjee, Silvia Affo, Naoto Fujiwara, Hua Su, Qiuyan Sun, Thomas M Savage, John R Wilson-Kanamori, Jorge M Caviglia, LiKang Chin, Dongning Chen, Xiaobo Wang, Stefano Caruso, Jin Ku Kang, Amit Dipak Amin, Sebastian Wallace, Ross Dobie, Deqi Yin, Oscar M Rodriguez-Fiallos, Chuan Yin, Adam Mehal, Benjamin Izar, Richard A Friedman, Rebecca G Wells, Utpal B Pajvani, Yujin Hoshida, Helen E Remotti, Nicholas Arpaia, Jessica Zucman-Rossi, Michael Karin, Neil C Henderson, Ira Tabas, Robert F Schwabe | Nature | 2022-10-05 |
| AHR is a master regulator of diverse pathways in endogenous metabolism. | Jeffry C Granados, Kian Falah, Imhoi Koo, Ethan W Morgan, Gary H Perdew, Andrew D Patterson, Neema Jamshidi, Sanjay K Nigam | Scientific Reports | 2022-10-05 |
| Age-dependent aggregation of ribosomal RNA-binding proteins links deterioration in chromatin stability with challenges to proteostasis. | Julie Paxman, Zhen Zhou, Richard O'Laughlin, Yuting Liu, Yang Li, Wanying Tian, Hetian Su, Yanfei Jiang, Shayna E Holness, Elizabeth Stasiowski, Lev S Tsimring, Lorraine Pillus, Jeff Hasty, Nan Hao | ELife | 2022-10-04 |
| A pals-25 gain-of-function allele triggers systemic resistance against natural pathogens of C. elegans. | Spencer S Gang, Manish Grover, Kirthi C Reddy, Deevya Raman, Ya-Ting Chang, Damian C Ekiert, Michalis Barkoulas, Emily R Troemel | PLoS Genetics | 2022-10-03 |
| #COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. | Abigail Dommer, Lorenzo Casalino, Fiona Kearns, Mia Rosenfeld, Nicholas Wauer, Surl-Hee Ahn, John Russo, Sofia Oliveira, Clare Morris, Anthony Bogetti, Anda Trifan, Alexander Brace, Terra Sztain, Austin Clyde, Heng Ma, Chakra Chennubhotla, Hyungro Lee, Matteo Turilli, Syma Khalid, Teresa Tamayo-Mendoza, Matthew Welborn, Anders Christensen, Daniel Ga Smith, Zhuoran Qiao, Sai K Sirumalla, Michael O'Connor, Frederick Manby, Anima Anandkumar, David Hardy, James Phillips, Abraham Stern, Josh Romero, David Clark, Mitchell Dorrell, Tom Maiden, Lei Huang, John McCalpin, Christopher Woods, Alan Gray, Matt Williams, Bryan Barker, Harinda Rajapaksha, Richard Pitts, Tom Gibbs, John Stone, Daniel M Zuckerman, Adrian J Mulholland, Thomas Miller, Shantenu Jha, Arvind Ramanathan, Lillian Chong, Rommie E Amaro | The International Journal Of High Performance Computing Applications | 2022-10-02 |
| Transfer of antibiotics and their metabolites in human milk: implications for infant health and microbiota. | Sydney P Thomas, Erce Denizer, Simone Zuffa, Brookie M Best, Lars Bode, Christina D Chambers, Pieter C Dorrestein, George Y Liu, Jeremiah D Momper, Victor Nizet, Shirley M Tsunoda, Adriana H Tremoulet | Pharmacotherapy | 2022-10-01 |
| Targeted protein S-nitrosylation of ACE2 inhibits SARS-CoV-2 infection. | Chang-Ki Oh, Tomohiro Nakamura, Nathan Beutler, Xu Zhang, Juan Piña-Crespo, Maria Talantova, Swagata Ghatak, Dorit Trudler, Lauren N Carnevale, Scott R McKercher, Malina A Bakowski, Jolene K Diedrich, Amanda J Roberts, Ashley K Woods, Victor Chi, Anil K Gupta, Mia A Rosenfeld, Fiona L Kearns, Lorenzo Casalino, Namir Shaabani, Hejun Liu, Ian A Wilson, Rommie E Amaro, Dennis R Burton, John R Yates, Cyrus Becker, Thomas F Rogers, Arnab K Chatterjee, Stuart A Lipton | Nature Chemical Biology | 2022-09-29 |
| A Trait-Based Approach to Predicting Viral Host-Range Evolvability. | Hannah M Strobel, Elizabeth C Stuart, Justin R Meyer | Annual Review Of Virology | 2022-09-29 |
| The gastrointestinal and microbiome impact of a resistant starch blend from potato, banana, and apple fibers: A randomized clinical trial using smart caps. | Douglas Hanes, Brent Nowinski, Joseph J Lamb, Ilona A Larson, Daniel McDonald, Rob Knight, Se Jin Song, Noelle Patno | Frontiers In Nutrition | 2022-09-29 |
| Organic Anion Transporters (OAT) and Other SLC22 Transporters in Progression of Renal Cell Carcinoma. | Thomas C Whisenant, Sanjay K Nigam | Cancers | 2022-09-29 |
| Vaccine Effectiveness against SARS-CoV-2 Variants in Adolescents from 15 to 90 Days after Second Dose: A Population-Based Test-Negative Case-Control Study. | Eduardo A Oliveira, Maria Christina L Oliveira, Enrico A Colosimo, Ana Cristina Simões E Silva, Robert H Mak, Mariana A Vasconcelos, Ludmila R Silva, Daniella B Martelli, Clara C Pinhati, Hercílio Martelli-Júnior | The Journal Of Pediatrics | 2022-09-29 |
| Evolution of the ancestral mammalian karyotype and syntenic regions. | Joana Damas, Marco Corbo, Jaebum Kim, Jason Turner-Maier, Marta Farré, Denis M Larkin, Oliver A Ryder, Cynthia Steiner, Marlys L Houck, Shaune Hall, Lily Shiue, Stephen Thomas, Thomas Swale, Mark Daly, Jonas Korlach, Marcela Uliano-Silva, Camila J Mazzoni, Bruce W Birren, Diane P Genereux, Jeremy Johnson, Kerstin Lindblad-Toh, Elinor K Karlsson, Martin T Nweeia, Rebecca N Johnson, , Harris A Lewin | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-09-26 |
| Asymptomatic or symptomatic SARS-CoV-2 infection plus vaccination confers increased adaptive immunity to variants of concern. | Peifang Sun, Irene Ramos, Camila H Coelho, Alba Grifoni, Corey A Balinsky, Sindhu Vangeti, Alison Tarke, Nathaniel I Bloom, Vihasi Jani, Silvia J Jakubski, David A Boulifard, Elizabeth Cooper, Carl W Goforth, Jan Marayag, Amethyst Marrone, Edgar Nunez, Lindsey White, Chad K Porter, Victor A Sugiharto, Megan Schilling, Avinash S Mahajan, Charmagne Beckett, Alessandro Sette, Stuart C Sealfon, Shane Crotty, Andrew G Letizia | IScience | 2022-09-23 |
| Nanoparticle-modified microrobots for in vivo antibiotic delivery to treat acute bacterial pneumonia. | Fangyu Zhang, Jia Zhuang, Zhengxing Li, Hua Gong, Berta Esteban-Fernández de Ávila, Yaou Duan, Qiangzhe Zhang, Jiarong Zhou, Lu Yin, Emil Karshalev, Weiwei Gao, Victor Nizet, Ronnie H Fang, Liangfang Zhang, Joseph Wang | Nature Materials | 2022-09-22 |
| Candida albicans-specific Th17 cell-mediated response contributes to alcohol-associated liver disease. | Suling Zeng, Elisa Rosati, Carina Saggau, Berith Messner, Huikuan Chu, Yi Duan, Phillipp Hartmann, Yanhan Wang, Shengyun Ma, Wendy Jia Men Huang, Jihyung Lee, Sung Min Lee, Raquel Carvalho-Gontijo, Vivian Zhang, Joseph P Hoffmann, Jay K Kolls, Eyal Raz, David A Brenner, Tatiana Kisseleva, Salomé LeibundGut-Landmann, Petra Bacher, Peter Stärkel, Bernd Schnabl | Cell Host & Microbe | 2022-09-22 |
| Long-primed germinal centres with enduring affinity maturation and clonal migration. | Jeong Hyun Lee, Henry J Sutton, Christopher A Cottrell, Ivy Phung, Gabriel Ozorowski, Leigh M Sewall, Rebecca Nedellec, Catherine Nakao, Murillo Silva, Sara T Richey, Jonathan L Torre, Wen-Hsin Lee, Erik Georgeson, Michael Kubitz, Sam Hodges, Tina-Marie Mullen, Yumiko Adachi, Kimberly M Cirelli, Amitinder Kaur, Carolina Allers, Marissa Fahlberg, Brooke F Grasperge, Jason P Dufour, Faith Schiro, Pyone P Aye, Oleksandr Kalyuzhniy, Alessia Liguori, Diane G Carnathan, Guido Silvestri, Xiaoying Shen, David C Montefiori, Ronald S Veazey, Andrew B Ward, Lars Hangartner, Dennis R Burton, Darrell J Irvine, William R Schief, Shane Crotty | Nature | 2022-09-21 |
| Actinopolymorphols E and F, pyrazine alkaloids from a marine sediment-derived bacterium Streptomyces sp. | Sohee Kim, Prima F Hillman, Ji Young Lee, Juri Lee, Jihye Lee, Sun-Shin Cha, Dong-Chan Oh, Sang-Jip Nam, William Fenical | The Journal Of Antibiotics | 2022-09-15 |
| Phase 2 Safety and Antiviral Activity of SAB-185, a Novel Polyclonal Antibody Therapy for Nonhospitalized Adults With COVID-19. | Babafemi O Taiwo, Kara W Chew, Carlee Moser, David Alain Wohl, Eric S Daar, Jonathan Z Li, Alexander L Greninger, Christoph Bausch, Thomas Luke, Keila Hoover, Gene Neytman, Mark J Giganti, Maxine Olefsky, Arzhang Cyrus Javan, Courtney V Fletcher, Joseph J Eron, Judith S Currier, Michael D Hughes, Davey M Smith, | The Journal Of Infectious Diseases | 2022-09-14 |
| Strengthening of enterococcal biofilms by Esp. | Lindsey Spiegelman, Adrian Bahn-Suh, Elizabeth T Montaño, Ling Zhang, Greg L Hura, Kathryn A Patras, Amit Kumar, F Akif Tezcan, Victor Nizet, Susan E Tsutakawa, Partho Ghosh | PLoS Pathogens | 2022-09-14 |
| The Transcription Factor YY-1 Is an Essential Regulator of T Follicular Helper Cell Differentiation. | Simon Bélanger, Sonya Haupt, Brian L Freeman, Adam J Getzler, Huitian Diao, Matthew E Pipkin, Shane Crotty | Journal Of Immunology (Baltimore, Md. : 1950) | 2022-09-12 |
| Siderophore Immunization Restricted Colonization of Adherent-Invasive Escherichia coli and Ameliorated Experimental Colitis. | Romana R Gerner, Suzana Hossain, Artur Sargun, Kareem Siada, Grant J Norton, Tengfei Zheng, Wilma Neumann, Sean-Paul Nuccio, Elizabeth M Nolan, Manuela Raffatellu | MBio | 2022-09-12 |
| Development of host immune response to bacteriophage in a lung transplant recipient on adjunctive phage therapy for a multidrug resistant pneumonia. | Jennifer M Dan, Susan M Lehman, Rita Al-Kolla, Samuel Penziner, Kamyar Afshar, Gordon Yung, Eugene Golts, Nancy Law, Cathy Logan, Zsuzsanna Kovach, Gill Mearns, Robert T Schooley, Saima Aslam, Shane Crotty | The Journal Of Infectious Diseases | 2022-09-09 |
| Assembling a Reference Phylogenomic Tree of Bacteria and Archaea by Summarizing Many Gene Phylogenies. | Qiyun Zhu, Siavash Mirarab | Methods In Molecular Biology (Clifton, N.J.) | 2022-09-09 |
| Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References. | Daniel Hakim, Stephen Wandro, Karsten Zengler, Livia S Zaramela, Brent Nowinski, Austin Swafford, Qiyun Zhu, Se Jin Song, Antonio Gonzalez, Daniel McDonald, Rob Knight | MSystems | 2022-09-08 |
| A single-administration therapeutic interfering particle reduces SARS-CoV-2 viral shedding and pathogenesis in hamsters. | Sonali Chaturvedi, Nathan Beutler, Gustavo Vasen, Michael Pablo, Xinyue Chen, Giuliana Calia, Lauren Buie, Robert Rodick, Davey Smith, Thomas Rogers, Leor S Weinberger | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-09-08 |
| Heterogeneous multimeric metabolite ion species observed in LC-MS based metabolomics data sets. | Yasin El Abiead, Christoph Bueschl, Lisa Panzenboeck, Mingxun Wang, Maria Doppler, Bernhard Seidl, Jürgen Zanghellini, Pieter C Dorrestein, Gunda Koellensperger | Analytica Chimica Acta | 2022-09-08 |
| Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa. | Akanksha Rajput, Hannah Tsunemoto, Anand V Sastry, Richard Szubin, Kevin Rychel, Siddharth M Chauhan, Joe Pogliano, Bernhard O Palsson | Nucleic Acids Research | 2022-09-06 |
| Research gaps and opportunities in precision nutrition: an NIH workshop report. | Bruce Y Lee, José M Ordovás, Elizabeth J Parks, Cheryl A M Anderson, Albert-László Barabási, Steven K Clinton, Kayla de la Haye, Valerie B Duffy, Paul W Franks, Elizabeth M Ginexi, Kristian J Hammond, Erin C Hanlon, Michael Hittle, Emily Ho, Abigail L Horn, Richard S Isaacson, Patricia L Mabry, Susan Malone, Corby K Martin, Josiemer Mattei, Simin Nikbin Meydani, Lorene M Nelson, Marian L Neuhouser, Brendan Parent, Nicolaas P Pronk, Helen M Roche, Suchi Saria, Frank A J L Scheer, Eran Segal, Mary Ann Sevick, Tim D Spector, Linda B Van Horn, Krista A Varady, Venkata Saroja Voruganti, Marie F Martinez | The American Journal Of Clinical Nutrition | 2022-09-02 |
| -Acetyl Migration within the Sialic Acid Side Chain: A Mechanistic Study Using the Nanoreactor. | Lisa Oh, Yang Ji, Wanqing Li, Ajit Varki, Xi Chen, Lee-Ping Wang | Biochemistry | 2022-09-02 |
| Limited microbiome differences in captive and semi-wild primate populations consuming similar diets. | Sahana Kuthyar, Karli Watson, Shi Huang, Lauren J N Brent, Michael Platt, Julie Horvath, Janis Gonzalez-Martinez, Melween Martínez, Filipa Godoy-Vitorino, Rob Knight, Maria Gloria Dominguez-Bello, Katherine R Amato | FEMS Microbiology Ecology | 2022-09-01 |
| Hyponatremia in Patients With Multisystem Inflammatory Syndrome in Children. | Tatyana Mills, Aditi Trivedi, Adriana H Tremoulet, Daniel Hershey, Jane C Burns | The Pediatric Infectious Disease Journal | 2022-09-01 |
| Proof of Concept for the Detection with Custom Printed Electrodes of Enterobactin as a Marker of . | Alexandra Canciu, Andreea Cernat, Mihaela Tertis, Silvia Botarca, Madalina Adriana Bordea, Joseph Wang, Cecilia Cristea | International Journal Of Molecular Sciences | 2022-08-31 |
| SARS-CoV-2 Omicron Variant of Concern: Everything You Wanted to Know about Omicron but Were Afraid to Ask. | Dong Hoon Shin, Davey M Smith, Jun Yong Choi | Yonsei Medical Journal | 2022-08-31 |
| Introducing the "Microbiomes and Social Equity" Special Collection. | Sue Ishaq, Jack Gilbert | MSystems | 2022-08-29 |
| Location-specific signatures of Crohn's disease at a multi-omics scale. | Carlos G Gonzalez, Robert H Mills, Qiyun Zhu, Consuelo Sauceda, Rob Knight, Parambir S Dulai, David J Gonzalez | Microbiome | 2022-08-24 |
| Multi-omics analyses of airway host-microbe interactions in chronic obstructive pulmonary disease identify potential therapeutic interventions. | Zhengzheng Yan, Boxuan Chen, Yuqiong Yang, Xinzhu Yi, Mingyuan Wei, Gertrude Ecklu-Mensah, Mary M Buschmann, Haiyue Liu, Jingyuan Gao, Weijie Liang, Xiaomin Liu, Junhao Yang, Wei Ma, Zhenyu Liang, Fengyan Wang, Dandan Chen, Lingwei Wang, Weijuan Shi, Martin R Stampfli, Pan Li, Shenhai Gong, Xia Chen, Wensheng Shu, Emad M El-Omar, Jack A Gilbert, Martin J Blaser, Hongwei Zhou, Rongchang Chen, Zhang Wang | Nature Microbiology | 2022-08-22 |
| Antiviral and clinical activity of bamlanivimab in a randomized trial of non-hospitalized adults with COVID-19. | Kara W Chew, Carlee Moser, Eric S Daar, David A Wohl, Jonathan Z Li, Robert W Coombs, Justin Ritz, Mark Giganti, Arzhang Cyrus Javan, Yijia Li, Manish C Choudhary, Rinki Deo, Carlos Malvestutto, Paul Klekotka, Karen Price, Ajay Nirula, William Fischer, Veenu Bala, Ruy M Ribeiro, Alan S Perelson, Courtney V Fletcher, Joseph J Eron, Judith S Currier, , Michael D Hughes, Davey M Smith | Nature Communications | 2022-08-22 |
| SARS-CoV-2 and MERS-CoV Spike Protein Binding Studies Support Stable Mimic of Bound 9--Acetylated Sialic Acids. | Lisa Oh, Ajit Varki, Xi Chen, Lee-Ping Wang | Molecules (Basel, Switzerland) | 2022-08-20 |
| Structural Basis of Stereospecific Vanadium-Dependent Haloperoxidase Family Enzymes in Napyradiomycin Biosynthesis. | Percival Yang-Ting Chen, Sanjoy Adak, Jonathan R Chekan, David K Liscombe, Akimasa Miyanaga, Peter Bernhardt, Stefan Diethelm, Elisha N Fielding, Jonathan H George, Zachary D Miles, Lauren A M Murray, Taylor S Steele, Jaclyn M Winter, Joseph P Noel, Bradley S Moore | Biochemistry | 2022-08-19 |
| Discovery, classification, evolution and diversity of Siglecs. | Takashi Angata, Ajit Varki | Molecular Aspects Of Medicine | 2022-08-18 |
| Interdependence of Sebaceous Lipids and the Microbiome in Atopic Dermatitis. | Samia Almoughrabie, Richard L Gallo | The Journal Of Investigative Dermatology | 2022-08-16 |
| Comparison of the APAS Independence Automated Plate Reader System with the Manual Standard of Care for Processing Urine Culture Specimens. | Megan Chiu, Peiting Kuo, Khrissa Lecrone, Andrew Garcia, Ruohui Chen, Natalie E Quach, Xin M Tu, David T Pride | Microbiology Spectrum | 2022-08-16 |
| A Self-Immolative Fluorescent Probe for Selective Detection of SARS-CoV-2 Main Protease. | Ming Xu, Jiajing Zhou, Yong Cheng, Zhicheng Jin, Alex E Clark, Tengyu He, Wonjun Yim, Yi Li, Yu-Ci Chang, Zhuohong Wu, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Michael D Todd, Jesse V Jokerst | Analytical Chemistry | 2022-08-16 |
| Bicarbonate Effects on Antibacterial Immunity and Mucus Glycobiology in the Cystic Fibrosis Lung: A Review With Selected Experimental Observations. | Ruth Siew, Tzung-Lin Ou, Samira Dahesh, Kathryn Akong, Victor Nizet | Infectious Microbes & Diseases | 2022-08-16 |
| Design and validation of HIV peptide pools for detection of HIV-specific CD4+ and CD8+ T cells. | Rita Al-Kolla, Alba Grifoni, Shane Crotty, Alessandro Sette, Sara Gianella, Jennifer Dan | PloS One | 2022-08-16 |
| Nasal and Plasma Severe Acute Respiratory Syndrome Coronavirus 2 RNA Levels Are Associated With Timing of Symptom Resolution in the ACTIV-2 Trial of Nonhospitalized Adults With Coronavirus Disease 2019. | Yijia Li, Linda J Harrison, Kara W Chew, Judy S Currier, David A Wohl, Eric S Daar, Teresa H Evering, Ryan Wu, Mark Giganti, Justin Ritz, Arzhang Cyrus Javan, Robert W Coombs, Carlee Moser, Michael D Hughes, Joseph J Eron, Davey M Smith, Jonathan Z Li | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-08-15 |
| Structure-Based Identification of Naphthoquinones and Derivatives as Novel Inhibitors of Main Protease M and Papain-like Protease PL of SARS-CoV-2. | Lucianna H Santos, Thales Kronenberger, Renata G Almeida, Elany B Silva, Rafael E O Rocha, Joyce C Oliveira, Luiza V Barreto, Danielle Skinner, Pavla Fajtová, Miriam A Giardini, Brendon Woodworth, Conner Bardine, André L Lourenço, Charles S Craik, Antti Poso, Larissa M Podust, James H McKerrow, Jair L Siqueira-Neto, Anthony J O'Donoghue, Eufrânio N da Silva Júnior, Rafaela S Ferreira | Journal Of Chemical Information And Modeling | 2022-08-12 |
| Author Correction: Cross-reactive immunity against the SARS-CoV-2 Omicron variant is low in pediatric patients with prior COVID-19 or MIS-C. | Juanjie Tang, Tanya Novak, Julian Hecker, Gabrielle Grubbs, Fatema Tuz Zahra, Lorenza Bellusci, Sara Pourhashemi, Janet Chou, Kristin Moffitt, Natasha B Halasa, Stephanie P Schwartz, Tracie C Walker, Keiko M Tarquinio, Matt S Zinter, Mary A Staat, Shira J Gertz, Natalie Z Cvijanovich, Jennifer E Schuster, Laura L Loftis, Bria M Coates, Elizabeth H Mack, Katherine Irby, Julie C Fitzgerald, Courtney M Rowan, Michele Kong, Heidi R Flori, Aline B Maddux, Steven L Shein, Hillary Crandall, Janet R Hume, Charlotte V Hobbs, Adriana H Tremoulet, Chisato Shimizu, Jane C Burns, Sabrina R Chen, Hye Kyung Moon, Christoph Lange, Adrienne G Randolph, Surender Khurana | Nature Communications | 2022-08-12 |
| The Microbiome and Mental Health Across the Lifespan. | Faith Dickerson, Amanda Hazel Dilmore, Filipa Godoy-Vitorino, Tanya T Nguyen, Martin Paulus, Adrian A Pinto-Tomas, Cristofer Moya-Roman, Ibrahim Zuniga-Chaves, Emily G Severance, Dilip V Jeste | Current Topics In Behavioral Neurosciences | 2022-08-11 |
| Broadly neutralizing antibodies to SARS-related viruses can be readily induced in rhesus macaques. | Wan-Ting He, Meng Yuan, Sean Callaghan, Rami Musharrafieh, Ge Song, Murillo Silva, Nathan Beutler, Wen-Hsin Lee, Peter Yong, Jonathan L Torres, Mariane Melo, Panpan Zhou, Fangzhu Zhao, Xueyong Zhu, Linghang Peng, Deli Huang, Fabio Anzanello, James Ricketts, Mara Parren, Elijah Garcia, Melissa Ferguson, William Rinaldi, Stephen A Rawlings, David Nemazee, Davey M Smith, Bryan Briney, Yana Safonova, Thomas F Rogers, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Shane Crotty, Darrell J Irvine, Andrew B Ward, Ian A Wilson, Dennis R Burton, Raiees Andrabi | Science Translational Medicine | 2022-08-10 |
| Acetate reprograms gut microbiota during alcohol consumption. | Cameron Martino, Livia S Zaramela, Bei Gao, Mallory Embree, Janna Tarasova, Seth J Parker, Yanhan Wang, Huikuan Chu, Peng Chen, Kuei-Chuan Lee, Daniela Domingos Galzerani, Jivani M Gengatharan, Asama Lekbua, Maxwell Neal, Rob Knight, Hidekazu Tsukamoto, Christian M Metallo, Bernd Schnabl, Karsten Zengler | Nature Communications | 2022-08-08 |
| Native metabolomics identifies the rivulariapeptolide family of protease inhibitors. | Raphael Reher, Allegra T Aron, Pavla Fajtová, Paolo Stincone, Berenike Wagner, Alicia I Pérez-Lorente, Chenxi Liu, Ido Y Ben Shalom, Wout Bittremieux, Mingxun Wang, Kyowon Jeong, Marie L Matos-Hernandez, Kelsey L Alexander, Eduardo J Caro-Diaz, C Benjamin Naman, J H William Scanlan, Phil M M Hochban, Wibke E Diederich, Carlos Molina-Santiago, Diego Romero, Khaled A Selim, Peter Sass, Heike Brötz-Oesterhelt, Chambers C Hughes, Pieter C Dorrestein, Anthony J O'Donoghue, William H Gerwick, Daniel Petras | Nature Communications | 2022-08-08 |
| Breathing and tilting: mesoscale simulations illuminate influenza glycoprotein vulnerabilities. | Lorenzo Casalino, Christian Seitz, Julia Lederhofer, Yaroslav Tsybovsky, Ian A Wilson, Masaru Kanekiyo, Rommie E Amaro | BioRxiv : The Preprint Server For Biology | 2022-08-07 |
| Intestinal transgene delivery with native E. coli chassis allows persistent physiological changes. | Baylee J Russell, Steven D Brown, Nicole Siguenza, Irene Mai, Anand R Saran, Amulya Lingaraju, Erica S Maissy, Ana C Dantas Machado, Antonio F M Pinto, Concepcion Sanchez, Leigh-Ana Rossitto, Yukiko Miyamoto, R Alexander Richter, Samuel B Ho, Lars Eckmann, Jeff Hasty, David J Gonzalez, Alan Saghatelian, Rob Knight, Amir Zarrinpar | Cell | 2022-08-04 |
| Architecture and self-assembly of the jumbo bacteriophage nuclear shell. | Thomas G Laughlin, Amar Deep, Amy M Prichard, Christian Seitz, Yajie Gu, Eray Enustun, Sergey Suslov, Kanika Khanna, Erica A Birkholz, Emily Armbruster, J Andrew McCammon, Rommie E Amaro, Joe Pogliano, Kevin D Corbett, Elizabeth Villa | Nature | 2022-08-03 |
| Duodenal CD8+ T resident memory cell apoptosis contributes to gut barrier dysfunction and microbial translocation in early alcohol-associated liver disease in humans. | Luca Maccioni, Axelle Loriot, Joseph Dewulf, Guido Bommer, Yves Horsmans, Nicolas Lanthier, Isabelle Leclercq, Bernd Schnabl, Peter Stärkel | Alimentary Pharmacology & Therapeutics | 2022-08-02 |
| Fostering Sustainable Biomedical Research Training in Mozambique: A Spin-Off of the Medical Education Partnership Initiative. | Emília Virgínia Noormahomed, Sérgio Noormahomed, Delfina Hlashwayo, Emília Martins, Mamudo Ismail, Stephen W Bickler, Jean Nachega, Manuel Mahoche, Kim E Barrett, Constance A Benson, Robert T Schooley | Annals Of Global Health | 2022-08-02 |
| Vascular Proteome Responses Precede Organ Dysfunction in a Murine Model of Staphylococcus aureus Bacteremia. | James T Sorrentino, Gregory J Golden, Claire Morris, Chelsea D Painter, Victor Nizet, Alexandre Rosa Campos, Jeffrey W Smith, Christofer Karlsson, Johan Malmström, Nathan E Lewis, Jeffrey D Esko, Alejandro Gómez Toledo | MSystems | 2022-08-01 |
| Analysis of the FAST™ system for expedited identification and antimicrobial susceptibility testing of bloodborne pathogens. | Peiting Kuo, Khrissa LeCrone, Megan Chiu, Susan Realegeno, David T Pride | Diagnostic Microbiology And Infectious Disease | 2022-07-30 |
| The group A interleukin-8 protease SpyCEP promotes bacterial intracellular survival by evasion of autophagy. | René Bergmann, Giuseppe Gulotta, Federica Andreoni, Tomoko Sumitomo, Shigetada Kawabata, Annelies S Zinkernagel, Gursharan S Chhatwal, Victor Nizet, Manfred Rohde, Satoshi Uchiyama | Infectious Microbes & Diseases | 2022-07-30 |
| Evaluating impacts of syntenic block detection strategies on rearrangement phylogeny using Mycobacterium tuberculosis isolates. | Afif Elghraoui, Siavash Mirarab, Krister M Swenson, Faramarz Valafar | Bioinformatics (Oxford, England) | 2022-07-29 |
| Microbiota succession throughout life from the cradle to the grave. | Cameron Martino, Amanda Hazel Dilmore, Zachary M Burcham, Jessica L Metcalf, Dilip Jeste, Rob Knight | Nature Reviews. Microbiology | 2022-07-29 |
| RNA Fluorescence in situ Hybridization (FISH) to Visualize Microbial Colonization and Infection in Caenorhabditis elegans Intestines. | Dalaena E Rivera, Vladimir Lažetić, Emily R Troemel, Robert J Luallen | Journal Of Visualized Experiments : JoVE | 2022-07-27 |
| Comparative Pharmacokinetics of Tixagevimab/Cilgavimab (AZD7442) Administered Intravenously Versus Intramuscularly in Symptomatic SARS-CoV-2 Infection. | Rachel A Bender Ignacio, David A Wohl, Rosalin Arends, Venkatesh Pilla Reddy, Ying Mu, Arzhang Cyrus Javan, Michael D Hughes, Joseph J Eron, Judith S Currier, Davey Smith, Kara W Chew, Michael Gibbs, Courtney V Fletcher | Clinical Pharmacology And Therapeutics | 2022-07-26 |
| Non-invasive skin sampling detects systemically administered drugs in humans. | Morgan Panitchpakdi, Kelly C Weldon, Alan K Jarmusch, Emily C Gentry, Arianna Choi, Yadira Sepulveda, Shaden Aguirre, Kunyang Sun, Jeremiah D Momper, Pieter C Dorrestein, Shirley M Tsunoda | PloS One | 2022-07-26 |
| Correction for Rudicell et al., "High Prevalence of Simian Immunodeficiency Virus Infection in a Community of Savanna Chimpanzees". | Rebecca S Rudicell, Alex K Piel, Fiona Stewart, Deborah L Moore, Gerald H Learn, Yingying Li, Jun Takehisa, Lilian Pintea, George M Shaw, Jim Moore, Paul M Sharp, Beatrice H Hahn | Journal Of Virology | 2022-07-26 |
| Lymphatic-preserving treatment sequencing with immune checkpoint inhibition unleashes cDC1-dependent antitumor immunity in HNSCC. | Robert Saddawi-Konefka, Aoife O'Farrell, Farhoud Faraji, Lauren Clubb, Michael M Allevato, Shawn M Jensen, Bryan S Yung, Zhiyong Wang, Victoria H Wu, Nana-Ama Anang, Riyam Al Msari, Shiruyeh Schokrpur, Ida Franiak Pietryga, Alfredo A Molinolo, Jill P Mesirov, Aaron B Simon, Bernard A Fox, Jack D Bui, Andrew Sharabi, Ezra E W Cohen, Joseph A Califano, J Silvio Gutkind | Nature Communications | 2022-07-25 |
| Protease-Responsive Peptide-Conjugated Mitochondrial-Targeting AIEgens for Selective Imaging and Inhibition of SARS-CoV-2-Infected Cells. | Yong Cheng, Alex E Clark, Jiajing Zhou, Tengyu He, Yi Li, Raina M Borum, Matthew N Creyer, Ming Xu, Zhicheng Jin, Jingcheng Zhou, Wonjun Yim, Zhuohong Wu, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Jesse V Jokerst | ACS Nano | 2022-07-25 |
| Association of compassion and empathy with prosocial health behaviors and attitudes in a pandemic. | Melissa M Karnaze, John Bellettiere, Cinnamon S Bloss | PloS One | 2022-07-22 |
| TREM2 macrophages induced by human lipids drive inflammation in acne lesions. | Tran H Do, Feiyang Ma, Priscila R Andrade, Rosane Teles, Bruno J de Andrade Silva, Chanyue Hu, Alejandro Espinoza, Jer-En Hsu, Chun-Seok Cho, Myungjin Kim, Jingyue Xi, Xianying Xing, Olesya Plazyo, Lam C Tsoi, Carol Cheng, Jenny Kim, Bryan D Bryson, Alan M O'Neill, Marco Colonna, Johann E Gudjonsson, Eynav Klechevsky, Jun Hee Lee, Richard L Gallo, Barry R Bloom, Matteo Pellegrini, Robert L Modlin | Science Immunology | 2022-07-22 |
| Coupling of distant ATPase domains in the circadian clock protein KaiC. | Jeffrey A Swan, Colby R Sandate, Archana G Chavan, Alfred M Freeberg, Diana Etwaru, Dustin C Ernst, Joseph G Palacios, Susan S Golden, Andy LiWang, Gabriel C Lander, Carrie L Partch | Nature Structural & Molecular Biology | 2022-07-21 |
| Harnessing the microbiome to prevent global biodiversity loss. | Raquel S Peixoto, Christian R Voolstra, Michael Sweet, Carlos M Duarte, Susana Carvalho, Helena Villela, Jeantine E Lunshof, Lone Gram, Douglas C Woodhams, Jens Walter, Anna Roik, Ute Hentschel, Rebecca Vega Thurber, Brendan Daisley, Blake Ushijima, Daniele Daffonchio, Rodrigo Costa, Tina Keller-Costa, Jeff S Bowman, Alexandre S Rosado, Gregor Reid, Christopher E Mason, Jenifer B Walke, Torsten Thomas, Gabriele Berg | Nature Microbiology | 2022-07-21 |
| Omicron spike function and neutralizing activity elicited by a comprehensive panel of vaccines. | John E Bowen, Amin Addetia, Ha V Dang, Cameron Stewart, Jack T Brown, William K Sharkey, Kaitlin R Sprouse, Alexandra C Walls, Ignacio G Mazzitelli, Jennifer K Logue, Nicholas M Franko, Nadine Czudnochowski, Abigail E Powell, Exequiel Dellota, Kumail Ahmed, Asefa Shariq Ansari, Elisabetta Cameroni, Andrea Gori, Alessandra Bandera, Christine M Posavad, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Shane Crotty, Najeeha Talat Iqbal, Davide Corti, Jorge Geffner, Gyorgy Snell, Renata Grifantini, Helen Y Chu, David Veesler | Science (New York, N.Y.) | 2022-07-19 |
| Adaptive laboratory evolution and independent component analysis disentangle complex vancomycin adaptation trajectories. | Anaëlle Fait, Yara Seif, Kasper Mikkelsen, Saugat Poudel, Jerry M Wells, Bernhard O Palsson, Hanne Ingmer | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-07-19 |
| Association of Plasma Eicosanoid Levels With Immune, Viral, and Cognitive Outcomes in People With HIV. | Pragney Deme, Mohammed Moniruzzaman, David Moore, Robert Heaton, Ronald Ellis, Scott Letendre, Norman Haughey | Neurology | 2022-07-18 |
| Mass Difference Matching Unfolds Hidden Molecular Structures of Dissolved Organic Matter. | Carsten Simon, Kai Dührkop, Daniel Petras, Vanessa-Nina Roth, Sebastian Böcker, Pieter C Dorrestein, Gerd Gleixner | Environmental Science & Technology | 2022-07-14 |
| Genetic regulation of OAS1 nonsense-mediated decay underlies association with COVID-19 hospitalization in patients of European and African ancestries. | A Rouf Banday, Megan L Stanifer, Oscar Florez-Vargas, Olusegun O Onabajo, Brenen W Papenberg, Muhammad A Zahoor, Lisa Mirabello, Timothy J Ring, Chia-Han Lee, Paul S Albert, Evangelos Andreakos, Evgeny Arons, Greg Barsh, Leslie G Biesecker, David L Boyle, Mark S Brahier, Andrea Burnett-Hartman, Mary Carrington, Euijin Chang, Pyoeng Gyun Choe, Rex L Chisholm, Leandro M Colli, Clifton L Dalgard, Carolynn M Dude, Jeff Edberg, Nathan Erdmann, Heather S Feigelson, Benedito A Fonseca, Gary S Firestein, Adam J Gehring, Cuncai Guo, Michelle Ho, Steven Holland, Amy A Hutchinson, Hogune Im, Les'Shon Irby, Michael G Ison, Naima T Joseph, Hong Bin Kim, Robert J Kreitman, Bruce R Korf, Steven M Lipkin, Siham M Mahgoub, Iman Mohammed, Guilherme L Paschoalini, Jennifer A Pacheco, Michael J Peluso, Daniel J Rader, David T Redden, Marylyn D Ritchie, Brooke Rosenblum, M Elizabeth Ross, Hanaisa P Sant Anna, Sharon A Savage, Sudha Sharma, Eleni Siouti, Alicia K Smith, Vasiliki Triantafyllia, Joselin M Vargas, Jose D Vargas, Anurag Verma, Vibha Vij, Duane R Wesemann, Meredith Yeager, Xu Yu, Yu Zhang, Steeve Boulant, Stephen J Chanock, Jordan J Feld, Ludmila Prokunina-Olsson | Nature Genetics | 2022-07-14 |
| Non-Native Amino Acid Click Chemistry-Based Technology for Site-Specific Polysaccharide Conjugation to a Bacterial Protein Serving as Both Carrier and Vaccine Antigen. | Neeraj Kapoor, Satoshi Uchiyama, Lucy Pill, Leslie Bautista, Angie Sedra, Lu Yin, Maritoni Regan, Ellen Chu, Taylor Rabara, Melissa Wong, Peter Davey, Jeff Fairman, Victor Nizet | ACS Omega | 2022-07-11 |
| The Prevalence and Determinants of NAFLD and MAFLD and Their Severity in the VA Primary Care Setting. | Aaron P Thrift, Theresa H Nguyen, Codey Pham, Maya Balakrishnan, Fasiha Kanwal, Rohit Loomba, Hao T Duong, David Ramsey, Hashem B El-Serag | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2022-07-08 |
| Updating Urinary Microbiome Analyses to Enhance Biologic Interpretation. | Nazema Y Siddiqui, Li Ma, Linda Brubaker, Jialiang Mao, Carter Hoffman, Erin M Dahl, Zhuoqun Wang, Lisa Karstens | Frontiers In Cellular And Infection Microbiology | 2022-07-08 |
| Comparative Dynamics of Delta and Omicron SARS-CoV-2 Variants across and between California and Mexico. | Sanjay R Mehta, Davey M Smith, Celia Boukadida, Antoine Chaillon | Viruses | 2022-07-08 |
| Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission. | Smruthi Karthikeyan, Joshua I Levy, Peter De Hoff, Greg Humphrey, Amanda Birmingham, Kristen Jepsen, Sawyer Farmer, Helena M Tubb, Tommy Valles, Caitlin E Tribelhorn, Rebecca Tsai, Stefan Aigner, Shashank Sathe, Niema Moshiri, Benjamin Henson, Adam M Mark, Abbas Hakim, Nathan A Baer, Tom Barber, Pedro Belda-Ferre, Marisol Chacón, Willi Cheung, Evelyn S Cresini, Emily R Eisner, Alma L Lastrella, Elijah S Lawrence, Clarisse A Marotz, Toan T Ngo, Tyler Ostrander, Ashley Plascencia, Rodolfo A Salido, Phoebe Seaver, Elizabeth W Smoot, Daniel McDonald, Robert M Neuhard, Angela L Scioscia, Alysson M Satterlund, Elizabeth H Simmons, Dismas B Abelman, David Brenner, Judith C Bruner, Anne Buckley, Michael Ellison, Jeffrey Gattas, Steven L Gonias, Matt Hale, Faith Hawkins, Lydia Ikeda, Hemlata Jhaveri, Ted Johnson, Vince Kellen, Brendan Kremer, Gary Matthews, Ronald W McLawhon, Pierre Ouillet, Daniel Park, Allorah Pradenas, Sharon Reed, Lindsay Riggs, Alison Sanders, Bradley Sollenberger, Angela Song, Benjamin White, Terri Winbush, Christine M Aceves, Catelyn Anderson, Karthik Gangavarapu, Emory Hufbauer, Ezra Kurzban, Justin Lee, Nathaniel L Matteson, Edyth Parker, Sarah A Perkins, Karthik S Ramesh, Refugio Robles-Sikisaka, Madison A Schwab, Emily Spencer, Shirlee Wohl, Laura Nicholson, Ian H Mchardy, David P Dimmock, Charlotte A Hobbs, Omid Bakhtar, Aaron Harding, Art Mendoza, Alexandre Bolze, David Becker, Elizabeth T Cirulli, Magnus Isaksson, Kelly M Schiabor Barrett, Nicole L Washington, John D Malone, Ashleigh Murphy Schafer, Nikos Gurfield, Sarah Stous, Rebecca Fielding-Miller, Richard S Garfein, Tommi Gaines, Cheryl Anderson, Natasha K Martin, Robert Schooley, Brett Austin, Duncan R MacCannell, Stephen F Kingsmore, William Lee, Seema Shah, Eric McDonald, Alexander T Yu, Mark Zeller, Kathleen M Fisch, Christopher Longhurst, Patty Maysent, David Pride, Pradeep K Khosla, Louise C Laurent, Gene W Yeo, Kristian G Andersen, Rob Knight | Nature | 2022-07-07 |
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| T Cells in Multisystem Inflammatory Syndrome in Children (MIS-C) Have a Predominant CD4+ T Helper Response to SARS-CoV-2 Peptides and Numerous Virus-Specific CD4- CD8- Double-Negative T Cells. | Li-En Hsieh, Jaeyoon Song, Alba Grifoni, Chisato Shimizu, Adriana H Tremoulet, Kirsten B Dummer, Jane C Burns, Alessandro Sette, Alessandra Franco | International Journal Of Molecular Sciences | 2022-06-29 |
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| Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity. | Amitesh Anand, Arjun Patel, Ke Chen, Connor A Olson, Patrick V Phaneuf, Cameron Lamoureux, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O Palsson | Nature Communications | 2022-06-27 |
| Heterologous Expression in of the Columbamide Pathway from the Cyanobacterium and Production of New Analogs. | Arnaud Taton, Sebastian Rohrer, Brienna Diaz, Raphael Reher, Andres Mauricio Caraballo Rodriguez, Marsha L Pierce, Pieter C Dorrestein, Lena Gerwick, William H Gerwick, James W Golden | ACS Chemical Biology | 2022-06-27 |
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| Monoclonal antibody treatment drives rapid culture conversion in SARS-CoV-2 infection. | Julie Boucau, Kara W Chew, Manish C Choudhary, Rinki Deo, James Regan, James P Flynn, Charles R Crain, Michael D Hughes, Justin Ritz, Carlee Moser, Joan A Dragavon, Arzhang C Javan, Ajay Nirula, Paul Klekotka, Alexander L Greninger, Robert W Coombs, William A Fischer, Eric S Daar, David A Wohl, Joseph J Eron, Judith S Currier, Davey M Smith, , Jonathan Z Li, Amy K Barczak, | Cell Reports. Medicine | 2022-06-20 |
| Contribution of Streptococcus pyogenes M87 protein to innate immune resistance and virulence. | Yujiro Hirose, Piotr Kolesinski, Masanobu Hiraoka, Satoshi Uchiyama, Raymond H Zurich, Monika Kumaraswamy, Elisabet Bjanes, Partho Ghosh, Shigetada Kawabata, Victor Nizet | Microbial Pathogenesis | 2022-06-17 |
| A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities. | Justin P Shaffer, Carolina S Carpenter, Cameron Martino, Rodolfo A Salido, Jeremiah J Minich, MacKenzie Bryant, Karenina Sanders, Tara Schwartz, Gregory Humphrey, Austin D Swafford, Rob Knight | BioTechniques | 2022-06-17 |
| Single-cell characterization of step-wise acquisition of carboplatin resistance in ovarian cancer. | Alexander T Wenzel, Devora Champa, Hrishi Venkatesh, Si Sun, Cheng-Yu Tsai, Jill P Mesirov, Jack D Bui, Stephen B Howell, Olivier Harismendy | NPJ Systems Biology And Applications | 2022-06-17 |
| Characterizing genetic transmission networks among newly diagnosed HIV-1 infected individuals in eastern China: 2012-2016. | Xiaobei Ding, Antoine Chaillon, Xiaohong Pan, Jiafeng Zhang, Ping Zhong, Lin He, Wanjun Chen, Qin Fan, Jun Jiang, Mingyu Luo, Yan Xia, Zhihong Guo, Davey M Smith | PloS One | 2022-06-16 |
| Small-Molecule Thioesters as SARS-CoV-2 Main Protease Inhibitors: Enzyme Inhibition, Structure-Activity Relationships, Antiviral Activity, and X-ray Structure Determination. | Thanigaimalai Pillaiyar, Philipp Flury, Nadine Krüger, Haixia Su, Laura Schäkel, Elany Barbosa Da Silva, Olga Eppler, Thales Kronenberger, Tianqing Nie, Stephanie Luedtke, Cheila Rocha, Katharina Sylvester, Marvin R I Petry, James H McKerrow, Antti Poso, Stefan Pöhlmann, Michael Gütschow, Anthony J O'Donoghue, Yechun Xu, Christa E Müller, Stefan A Laufer | Journal Of Medicinal Chemistry | 2022-06-16 |
| Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings. | Victor J Cantú, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Karenina Sanders, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Evelyn S Crescini, Peter De Hoff, Emily Eisner, Abbas Hakim, Bhavika Kapadia, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Shashank Sathe, Phoebe Seaver, Elizabeth W Smoot, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight | MSystems | 2022-06-15 |
| Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings. | Victor J Cantú, Karenina Sanders, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Peter De Hoff, Emily Eisner, Abbas Hakim, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Ashley Plascencia, Shashank Sathe, Elizabeth W Smoot, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight | MSystems | 2022-06-15 |
| Potential Immune-Microbiome Interactions in Breast Cancer May Advance Treatment: What's Holding Us Back? | Austin D Swafford, Soni Khandelwal, Shrikant Bhute | Critical Reviews In Immunology | 2022-06-13 |
| Discovery of Triple Inhibitors of Both SARS-CoV-2 Proteases and Human Cathepsin L. | Ittipat Meewan, Jacob Kattoula, Julius Y Kattoula, Danielle Skinner, Pavla Fajtová, Miriam A Giardini, Brendon Woodworth, James H McKerrow, Jair Lage de Siqueira-Neto, Anthony J O'Donoghue, Ruben Abagyan | Pharmaceuticals (Basel, Switzerland) | 2022-06-13 |
| Baseline microbiome and metabolome are associated with response to ITIS diet in an exploratory trial in patients with rheumatoid arthritis. | Roxana Coras, Cameron Martino, Julia M Gauglitz, Francesca Cedola, Anupriya Tripathi, Alan K Jarmusch, Maram Alharthi, Marta Fernandez-Bustamante, Meritxell Agustin-Perez, Abha Singh, Soo-In Choi, Tania Rivera, Katherine Nguyen, Tatyana Shekhtman, Tiffany Holt, Susan Lee, Shahrokh Golshan, Pieter C Dorrestein, Rob Knight, Monica Guma | Clinical And Translational Medicine | 2022-06-13 |
| Diurnal and eating-associated microbial patterns revealed via high-frequency saliva sampling. | Yichen Hu, Amnon Amir, Xiaochang Huang, Yan Li, Shi Huang, Elaine Wolfe, Sophie Weiss, Rob Knight, Zhenjiang Zech Xu | Genome Research | 2022-06-10 |
| Letter: non-invasive prediction models to exclude cirrhosis in NAFLD-not everyone fits the mould. Authors' reply. | Danielle Brandman, Marie Boyle, Stuart McPherson, Mark L Van Natta, Arun J Sanyal, Kris Kowdley, Brent Neuschwander-Tetri, Naga Chalasani, Manal F Abdelmalek, Norah A Terrault, Art McCullough, Ricki Bettencourt, Cyrielle Caussy, David E Kleiner, Cynthia Behling, James Tonascia, Quentin M Anstee, Rohit Loomba | Alimentary Pharmacology & Therapeutics | 2022-06-10 |
| Active genetics comes alive: Exploring the broad applications of CRISPR-based selfish genetic elements (or gene-drives): Exploring the broad applications of CRISPR-based selfish genetic elements (or gene-drives). | Valentino M Gantz, Ethan Bier | BioEssays : News And Reviews In Molecular, Cellular And Developmental Biology | 2022-06-09 |
| Binding of the SARS-CoV-2 envelope E protein to human BRD4 is essential for infection. | Kendra R Vann, Arpan Acharya, Suk Min Jang, Catherine Lachance, Mohamad Zandian, Tina A Holt, Audrey L Smith, Kabita Pandey, Donald L Durden, Dalia El-Gamal, Jacques Côté, Siddappa N Byrareddy, Tatiana G Kutateladze | Structure (London, England : 1993) | 2022-06-09 |
| The Urobiomes of Adult Women With Various Lower Urinary Tract Symptoms Status Differ: A Re-Analysis. | Cara Joyce, Thomas Halverson, Caroline Gonzalez, Linda Brubaker, Alan J Wolfe | Frontiers In Cellular And Infection Microbiology | 2022-06-09 |
| Risk assessment with gut microbiome and metabolite markers in NAFLD development. | Howell Leung, Xiaoxue Long, Yueqiong Ni, Lingling Qian, Emmanouil Nychas, Sara Leal Siliceo, Dennis Pohl, Kati Hanhineva, Yan Liu, Aimin Xu, Henrik B Nielsen, Eugeni Belda, Karine Clément, Rohit Loomba, Huating Li, Weiping Jia, Gianni Panagiotou | Science Translational Medicine | 2022-06-08 |
| Solithromycin in Children and Adolescents With Community-acquired Bacterial Pneumonia. | Jason E Lang, Christoph P Hornik, Carrie Elliott, Adam Silverstein, Chi Hornik, Amira Al-Uzri, Miroslava Bosheva, John S Bradley, Charissa Fay Corazon Borja-Tabora, David Di John, Ana Mendez Echevarria, Jessica E Ericson, David Friedel, Ferenc Gonczi, Marie Grace Dawn Isidro, Laura P James, Krisztina Kalocsai, Ioannis Koutroulis, Istvan Laki, Anna Lisa T Ong-Lim, Marta Nad, Gabor Simon, Salma Syed, Eva Szabo, Daniel K Benjamin, Michael Cohen-Wolkowiez, | The Pediatric Infectious Disease Journal | 2022-06-07 |
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| The oral microbiome and breast cancer and non-malignant breast disease, and its relationship with the fecal microbiome in the Ghana Breast Health Study. | Zeni Wu, Doratha A Byrd, Yunhu Wan, Daniel Ansong, Joe-Nat Clegg-Lamptey, Beatrice Wiafe-Addai, Lawrence Edusei, Ernest Adjei, Nicholas Titiloye, Florence Dedey, Francis Aitpillah, Joseph Oppong, Verna Vanderpuye, Ernest Osei-Bonsu, Casey L Dagnall, Kristine Jones, Amy Hutchinson, Belynda D Hicks, Thomas U Ahearn, Jianxin Shi, Rob Knight, Richard Biritwum, Joel Yarney, Seth Wiafe, Baffour Awuah, Kofi Nyarko, Jonine D Figueroa, Rashmi Sinha, Montserrat Garcia-Closas, Louise A Brinton, Emily Vogtmann | International Journal Of Cancer | 2022-06-03 |
| Changing global epidemiology of liver cancer from 2010 to 2019: NASH is the fastest growing cause of liver cancer. | Daniel Q Huang, Amit G Singal, Yuko Kono, Darren J H Tan, Hashem B El-Serag, Rohit Loomba | Cell Metabolism | 2022-06-03 |
| Synchrony and idiosyncrasy in the gut microbiome of wild baboons. | Johannes R Björk, Mauna R Dasari, Kim Roche, Laura Grieneisen, Trevor J Gould, Jean-Christophe Grenier, Vania Yotova, Neil Gottel, David Jansen, Laurence R Gesquiere, Jacob B Gordon, Niki H Learn, Tim L Wango, Raphael S Mututua, J Kinyua Warutere, Long'ida Siodi, Sayan Mukherjee, Luis B Barreiro, Susan C Alberts, Jack A Gilbert, Jenny Tung, Ran Blekhman, Elizabeth A Archie | Nature Ecology & Evolution | 2022-06-02 |
| Targeted isolation of diverse human protective broadly neutralizing antibodies against SARS-like viruses. | Wan-Ting He, Rami Musharrafieh, Ge Song, Katharina Dueker, Longping V Tse, David R Martinez, Alexandra Schäfer, Sean Callaghan, Peter Yong, Nathan Beutler, Jonathan L Torres, Reid M Volk, Panpan Zhou, Meng Yuan, Hejun Liu, Fabio Anzanello, Tazio Capozzola, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, Ian A Wilson, Yana Safonova, Andrew B Ward, Thomas F Rogers, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees Andrabi | Nature Immunology | 2022-06-02 |
| Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention. | Stephanie B Orchanian, Julia M Gauglitz, Stephen Wandro, Kelly C Weldon, Megan Doty, Kristina Stillwell, Shalisa Hansen, Lingjing Jiang, Fernando Vargas, Kyung E Rhee, Julie C Lumeng, Pieter C Dorrestein, Rob Knight, Jae H Kim, Se Jin Song, Austin D Swafford | Advanced Biology | 2022-06-01 |
| Epidemiological and Clinical Features of Kawasaki Disease During the COVID-19 Pandemic in the United States. | Jennifer A Burney, Samantha C Roberts, Laurel L DeHaan, Chisato Shimizu, Emelia V Bainto, Jane W Newburger, Samuel Dominguez, Pei-Ni Jone, Preeti Jaggi, Jacqueline R Szmuszkovicz, Anne H Rowley, Nichole Samuy, Paul Scalici, Adriana H Tremoulet, Daniel R Cayan, Jane C Burns, | JAMA Network Open | 2022-06-01 |
| Risk of Hepatocellular Carcinoma With Tenofovir vs Entecavir Treatment for Chronic Hepatitis B Virus: A Reconstructed Individual Patient Data Meta-analysis. | Darren Jun Hao Tan, Cheng Han Ng, Phoebe Wen Lin Tay, Nicholas Syn, Mark D Muthiah, Wen Hui Lim, Ansel Shao Pin Tang, Kai En Lim, Grace En Hui Lim, Nobuharu Tamaki, Beom Kyung Kim, Margaret Li Peng Teng, James Fung, Rohit Loomba, Mindie H Nguyen, Daniel Q Huang | JAMA Network Open | 2022-06-01 |
| Optimizing UniFrac with OpenACC Yields Greater Than One Thousand Times Speed Increase. | Igor Sfiligoi, George Armstrong, Antonio Gonzalez, Daniel McDonald, Rob Knight | MSystems | 2022-05-31 |
| Bacteriophage-Mediated Perturbation of Defined Bacterial Communities in an Model of the Human Gut. | Hedieh Attai, Jacob Wilde, Roland Liu, Jessica Chopyk, Andrew G Garcia, Emma Allen-Vercoe, David Pride | Microbiology Spectrum | 2022-05-31 |
| Cross-reactive immunity against the SARS-CoV-2 Omicron variant is low in pediatric patients with prior COVID-19 or MIS-C. | Juanjie Tang, Tanya Novak, Julian Hecker, Gabrielle Grubbs, Fatema Tuz Zahra, Lorenza Bellusci, Sara Pourhashemi, Janet Chou, Kristin Moffitt, Natasha B Halasa, Stephanie P Schwartz, Tracie C Walker, Keiko M Tarquinio, Matt S Zinter, Mary A Staat, Shira J Gertz, Natalie Z Cvijanovich, Jennifer E Schuster, Laura L Loftis, Bria M Coates, Elizabeth H Mack, Katherine Irby, Julie C Fitzgerald, Courtney M Rowan, Michele Kong, Heidi R Flori, Aline B Maddux, Steven L Shein, Hillary Crandall, Janet R Hume, Charlotte V Hobbs, Adriana H Tremoulet, Chisato Shimizu, Jane C Burns, Sabrina R Chen, Hye Kyung Moon, Christoph Lange, Adrienne G Randolph, Surender Khurana | Nature Communications | 2022-05-27 |
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| What were the historical reasons for the resistance to recognizing airborne transmission during the COVID-19 pandemic? | Jose L Jimenez, Linsey C Marr, Katherine Randall, Edward Thomas Ewing, Zeynep Tufekci, Trish Greenhalgh, Raymond Tellier, Julian W Tang, Yuguo Li, Lidia Morawska, Jonathan Mesiano-Crookston, David Fisman, Orla Hegarty, Stephanie J Dancer, Philomena M Bluyssen, Giorgio Buonanno, Marcel G L C Loomans, William P Bahnfleth, Maosheng Yao, Chandra Sekhar, Pawel Wargocki, Arsen K Melikov, Kimberly A Prather | Indoor Air | 2022-05-25 |
| Maternal diet is associated with human milk oligosaccharide profile. | Marta Selma-Royo, Sonia González, Miguel Gueimonde, Melinda Chang, Annalee Fürst, Cecilia Martínez-Costa, Lars Bode, Maria Carmen Collado | Molecular Nutrition & Food Research | 2022-05-25 |
| The Ubiquitous Human Skin Commensal Staphylococcus hominis Protects against Opportunistic Pathogens. | Morgan M Severn, Michael R Williams, Ali Shahbandi, Zoie L Bunch, Laurie M Lyon, Amber Nguyen, Livia S Zaramela, Daniel A Todd, Karsten Zengler, Nadja B Cech, Richard L Gallo, Alexander R Horswill | MBio | 2022-05-24 |
| Demographic and clinical characteristics associated with variations in antibody response to BNT162b2 COVID-19 vaccination among healthcare workers at an academic medical centre: a longitudinal cohort analysis. | Joseph E Ebinger, Sandy Joung, Yunxian Liu, Min Wu, Brittany Weber, Brian Claggett, Patrick G Botting, Nancy Sun, Matthew Driver, Yu Hung Kao, Briana Khuu, Timothy Wynter, Trevor-Trung Nguyen, Mona Alotaibi, John C Prostko, Edwin C Frias, James L Stewart, Helen S Goodridge, Peter Chen, Stanley C Jordan, Mohit Jain, Sonia Sharma, Justyna Fert-Bober, Jennifer E Van Eyk, Margo B Minissian, Moshe Arditi, Gil Y Melmed, Jonathan G Braun, Dermot P B McGovern, Susan Cheng, Kimia Sobhani | BMJ Open | 2022-05-24 |
| A Prebiotic Diet Alters the Fecal Microbiome and Improves Sleep in Response to Sleep Disruption in Rats. | Samuel J Bowers, Keith C Summa, Robert S Thompson, Antonio González, Fernando Vargas, Christopher Olker, Peng Jiang, Christopher A Lowry, Pieter C Dorrestein, Rob Knight, Kenneth P Wright, Monika Fleshner, Fred W Turek, Martha H Vitaterna | Frontiers In Neuroscience | 2022-05-24 |
| Supporting the Art: Medication Adherence Patterns in Persons Prescribed Ingestible Sensor-enabled Oral Pre-Exposure Prophylaxis to Prevent Human Immunodeficiency Virus (HIV) Infection. | Sara H Browne, Florin Vaida, Anya Umlauf, Amanda J Tucker, Terrence F Blaschke, Constance A Benson | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-05-23 |
| Fine scale transitions of the microbiota and metabolome along the gastrointestinal tract of herbivorous fishes. | Wesley J Sparagon, Emily C Gentry, Jeremiah J Minich, Lisa Vollbrecht, Lieve M L Laurens, Eric E Allen, Neil A Sims, Pieter C Dorrestein, Linda Wegley Kelly, Craig E Nelson | Animal Microbiome | 2022-05-23 |
| Ancient plant-like terpene biosynthesis in corals. | Immo Burkhardt, Tristan de Rond, Percival Yang-Ting Chen, Bradley S Moore | Nature Chemical Biology | 2022-05-23 |
| Complex and unexpected outcomes of antibiotic therapy against a polymicrobial infection. | Lydia-Ann J Ghuneim, Ruma Raghuvanshi, Kerri A Neugebauer, Douglas V Guzior, Martin H Christian, Bella Schena, Jeremiah M Feiner, Alicia Castillo-Bahena, Jenna Mielke, Marc McClelland, Douglas Conrad, Isaac Klapper, Tianyu Zhang, Robert A Quinn | The ISME Journal | 2022-05-21 |
| Changes in the gut microbiome associated with liver stiffness improvement in nonalcoholic steatohepatitis. | Suzanne R Sharpton, Ondrej Podlaha, Jen-Chieh Chuang, Yevgeniy Gindin, Robert P Myers, Rohit Loomba | Therapeutic Advances In Gastroenterology | 2022-05-18 |
| Biosynthesis of Guanitoxin Enables Global Environmental Detection in Freshwater Cyanobacteria. | Stella T Lima, Timothy R Fallon, Jennifer L Cordoza, Jonathan R Chekan, Endrews Delbaje, Austin R Hopiavuori, Danillo O Alvarenga, Steffaney M Wood, Hanna Luhavaya, Jackson T Baumgartner, Felipe A Dörr, Augusto Etchegaray, Ernani Pinto, Shaun M K McKinnie, Marli F Fiore, Bradley S Moore | Journal Of The American Chemical Society | 2022-05-18 |
| Virologic and Immunologic Characterization of Coronavirus Disease 2019 Recrudescence After Nirmatrelvir/Ritonavir Treatment. | Aaron F Carlin, Alex E Clark, Antoine Chaillon, Aaron F Garretson, William Bray, Magali Porrachia, AsherLev T Santos, Tariq M Rana, Davey M Smith | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-05-16 |
| SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with sp. | Victor J Cantú, Rodolfo A Salido, Shi Huang, Gibraan Rahman, Rebecca Tsai, Holly Valentine, Celestine G Magallanes, Stefan Aigner, Nathan A Baer, Tom Barber, Pedro Belda-Ferre, Maryann Betty, MacKenzie Bryant, Martín Casas Maya, Anelizze Castro-Martínez, Marisol Chacón, Willi Cheung, Evelyn S Crescini, Peter De Hoff, Emily Eisner, Sawyer Farmer, Abbas Hakim, Laura Kohn, Alma L Lastrella, Elijah S Lawrence, Sydney C Morgan, Toan T Ngo, Alhakam Nouri, Ashley Plascencia, Christopher A Ruiz, Shashank Sathe, Phoebe Seaver, Tara Shwartz, Elizabeth W Smoot, R Tyler Ostrander, Thomas Valles, Gene W Yeo, Louise C Laurent, Rebecca Fielding-Miller, Rob Knight | MSystems | 2022-05-16 |
| Nitrite Generating and Depleting Capacity of the Oral Microbiome and Cardiometabolic Risk: Results from ORIGINS. | Charlene E Goh, Bruno Bohn, Clarisse Marotz, Rebecca Molinsky, Sumith Roy, Bruce J Paster, Ching-Yuan Chen, Michael Rosenbaum, Melana Yuzefpolskaya, Paolo C Colombo, Moïse Desvarieux, Panos N Papapanou, David R Jacobs, Rob Knight, Ryan T Demmer | Journal Of The American Heart Association | 2022-05-16 |
| An Artificial Intelligence-guided signature reveals the shared host immune response in MIS-C and Kawasaki disease. | Pradipta Ghosh, Gajanan D Katkar, Chisato Shimizu, Jihoon Kim, Soni Khandelwal, Adriana H Tremoulet, John T Kanegaye, , Joseph Bocchini, Soumita Das, Jane C Burns, Debashis Sahoo | Nature Communications | 2022-05-16 |
| Case Series of Successful Intravenous Immunoglobulin (IVIG) Treatment in 4 Pregnant Patients with Severe COVID-19-Induced Hypoxia. | Matthew Geriak, Dominic McGrosso, David J Gonzalez, Matthew Dehner, George Sakoulas | The American Journal Of Case Reports | 2022-05-14 |
| SARS-CoV-2 Seroconversion in an Adult Horse with Direct Contact to a COVID-19 Individual. | Nicola Pusterla, Antoine Chaillon, Caroline Ignacio, Davey M Smith, Samantha Barnum, Kaila O Y Lawton, Greg Smith, Bradley Pickering | Viruses | 2022-05-14 |
| Changes in Gut Microbiome Composition with Healthy Aging in Humans: Links to Vascular Endothelial Function. | Nathan Greenberg, Marissa L Burnsed-Torres, Antonio Gonzalez, Abigail G Casso, Kara L Lubieniecki, Brian P Ziemba, Matthew J Rossman, Emily C Adam, Michel Chonchol, Kevin P Davy, Rob Knight, Douglas R Seals, Vienna E Brunt | FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology | 2022-05-13 |
| Evaluation of Small Molecule Inhibitors of Pseudomonas Virulence factor LasB as Non-Traditional Immunotherapeutics. | Sophia R Chou, Doris L LaRock, Joshua Sun, Victor Nizet, Julia K Bohannon, Christopher N LaRock | FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology | 2022-05-13 |
| Insights from C. elegans into Microsporidia Biology and Host-Pathogen Relationships. | Eillen Tecle, Emily R Troemel | Experientia Supplementum (2012) | 2022-05-11 |
| Variation in Survival and Gut Microbiome Composition of Hatchery-Grown Native Oysters at Various Locations within the Puget Sound. | Emily Kunselman, Jeremiah J Minich, Micah Horwith, Jack A Gilbert, Eric E Allen | Microbiology Spectrum | 2022-05-10 |
| The Impact of Exclusive Enteral Nutrition on the Gut Microbiome of Children with Medical Complexity. | Julia Beauchamp-Walters, Gajender Aleti, Lourdes Herrera, Justine Debelius, Natalie Lima, Pritha Dalal, Suzi Hong, Rob Knight, Kyung E Rhee | JPEN. Journal Of Parenteral And Enteral Nutrition | 2022-05-08 |
| Clinical Features of Patients Hospitalized for All Routes of Anthrax, 1880-2018: A Systematic Review. | Katherine Hendricks, Marissa K Person, John S Bradley, Thitipong Mongkolrattanothai, Nathaniel Hupert, Peter Eichacker, Arthur M Friedlander, William A Bower | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-05-06 |
| Cerebrospinal Fluid Shunt Infections: A Multicenter Pediatric Study. | Alastair McAlpine, Joan L Robinson, Michelle Barton, Archana Balamohan, H Dele Davies, Gwenn Skar, Marie-Astrid Lefebvre, Ahmed Almadani, Dolores Freire, Nicole Le Saux, Jennifer Bowes, Jocelyn A Srigley, Patrick Passarelli, John Bradley, Sarah Khan, Rupeena Purewal, Isabelle Viel-Thériault, Adrianna Ranger, Michael T Hawkes, | The Pediatric Infectious Disease Journal | 2022-05-06 |
| Zebrafish: an underutilized tool for discovery in host-microbe interactions. | Alexandra Stream, Cressida A Madigan | Trends In Immunology | 2022-05-05 |
| A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli. | Irina A Rodionova, Ye Gao, Jonathan Monk, Ying Hefner, Nicholas Wong, Richard Szubin, Hyun Gyu Lim, Dmitry A Rodionov, Zhongge Zhang, Milton H Saier, Bernhard O Palsson | Scientific Reports | 2022-05-04 |
| Subcellular organization of viral particles during maturation of nucleus-forming jumbo phage. | Vorrapon Chaikeeratisak, Kanika Khanna, Katrina T Nguyen, MacKennon E Egan, Eray Enustun, Emily Armbruster, Jina Lee, Kit Pogliano, Elizabeth Villa, Joe Pogliano | Science Advances | 2022-05-04 |
| Author Correction: Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly. | Mahul Chakraborty, Arunachalam Ramaiah, Adriana Adolfi, Paige Halas, Bhagyashree Kaduskar, Luna Thanh Ngo, Suvratha Jayaprasad, Kiran Paul, Saurabh Whadgar, Subhashini Srinivasan, Suresh Subramani, Ethan Bier, Anthony A James, J J Emerson | BMC Biology | 2022-05-02 |
| Transcription Factor 4 loss-of-function is associated with deficits in progenitor proliferation and cortical neuron content. | Fabio Papes, Antonio P Camargo, Janaina S de Souza, Vinicius M A Carvalho, Ryan A Szeto, Erin LaMontagne, José R Teixeira, Simoni H Avansini, Sandra M Sánchez-Sánchez, Thiago S Nakahara, Carolina N Santo, Wei Wu, Hang Yao, Barbara M P Araújo, Paulo E N F Velho, Gabriel G Haddad, Alysson R Muotri | Nature Communications | 2022-05-02 |
| Localized electrical stimulation triggers cell-type-specific proliferation in biofilms. | Colin J Comerci, Alan L Gillman, Leticia Galera-Laporta, Edgar Gutierrez, Alex Groisman, Joseph W Larkin, Jordi Garcia-Ojalvo, Gürol M Süel | Cell Systems | 2022-05-02 |
| Blockade of organic anion transport in humans after treatment with the drug probenecid leads to major metabolic alterations in plasma and urine. | Jeffry C Granados, Vibha Bhatnagar, Sanjay K Nigam | Clinical Pharmacology And Therapeutics | 2022-05-01 |
| DEPP: Deep Learning Enables Extending Species Trees using Single Genes. | Yueyu Jiang, Metin Balaban, Qiyun Zhu, Siavash Mirarab | Systematic Biology | 2022-04-29 |
| Outcomes and risk factors for death among hospitalized children and adolescents with kidney diseases and COVID-19: an analysis of a nationwide database. | Mariana A Vasconcelos, Ana Carmen Q Mendonça, Enrico A Colosimo, Noureddin Nourbakhsh, Hercílio Martelli-Júnior, Ludmila R Silva, Maria Christina L Oliveira, Clara C Pinhati, Robert H Mak, Ana Cristina Simões E Silva, Eduardo A Oliveira | Pediatric Nephrology (Berlin, Germany) | 2022-04-29 |
| Outcomes and risk factors of death among hospitalized children and adolescents with obesity and COVID-19 in Brazil: An analysis of a nationwide database. | Ana Cristina Simões E Silva, Mariana A Vasconcelos, Enrico A Colosimo, Ana Carmen Q Mendonça, Hercílio Martelli-Júnior, Ludmila R Silva, Maria Christina L Oliveira, Clara C Pinhati, Robert H Mak, Eduardo A Oliveira | Pediatric Obesity | 2022-04-28 |
| Effects of 'Healthy' Fecal Microbiota Transplantation against the Deterioration of Depression in Fawn-Hooded Rats. | Bing Hu, Promi Das, Xianglin Lv, Meng Shi, Jiye Aa, Kun Wang, Liping Duan, Jack A Gilbert, Yong Nie, Xiao-Lei Wu | MSystems | 2022-04-28 |
| Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype. | Cameron Martino, Daniel McDonald, Kalen Cantrell, Amanda Hazel Dilmore, Yoshiki Vázquez-Baeza, Liat Shenhav, Justin P Shaffer, Gibraan Rahman, George Armstrong, Celeste Allaband, Se Jin Song, Rob Knight | MSystems | 2022-04-28 |
| Associations between maternal obesity and offspring gut microbiome in the first year of life. | Stephanie P Gilley, Meghan L Ruebel, Clark Sims, Ying Zhong, Donald Turner, Renny S Lan, Lindsay M Pack, Brian D Piccolo, Sree V Chintapalli, Ann Abraham, Lars Bode, Aline Andres, Kartik Shankar | Pediatric Obesity | 2022-04-27 |
| Intestinal homeostasis and inflammation: gut microbiota at the crossroads of pancreas-intestinal barrier axis. | Zhongwei Zhang, Izumi Tanaka, Zhen Pan, Peter B Ernst, Hiroshi Kiyono, Yosuke Kurashima | European Journal Of Immunology | 2022-04-27 |
| Systems biology approach to functionally assess the pangenome reveals genetic diversity with discriminatory power. | Charles J Norsigian, Heather A Danhof, Colleen K Brand, Firas S Midani, Jared T Broddrick, Tor C Savidge, Robert A Britton, Bernhard O Palsson, Jennifer K Spinler, Jonathan M Monk | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-04-27 |
| Nutrient Gradients Mediate Complex Colony-Level Antibiotic Responses in Structured Microbial Populations. | Mirjana Stevanovic, Thomas Boukéké-Lesplulier, Lukas Hupe, Jeff Hasty, Philip Bittihn, Daniel Schultz | Frontiers In Microbiology | 2022-04-27 |
| Machine-learning from Pseudomonas putida KT2440 transcriptomes reveals its transcriptional regulatory network. | Hyun Gyu Lim, Kevin Rychel, Anand V Sastry, Gayle J Bentley, Joshua Mueller, Heidi S Schindel, Peter E Larsen, Philip D Laible, Adam M Guss, Wei Niu, Christopher W Johnson, Gregg T Beckham, Adam M Feist, Bernhard O Palsson | Metabolic Engineering | 2022-04-27 |
| Comparative Genomics of Synechococcus elongatus Explains the Phenotypic Diversity of the Strains. | Marie Adomako, Dustin Ernst, Ryan Simkovsky, Yi-Yun Chao, Jingtong Wang, Mingxu Fang, Christiane Bouchier, Rocio Lopez-Igual, Didier Mazel, Muriel Gugger, Susan S Golden | MBio | 2022-04-27 |
| FastViFi: Fast and accurate detection of (Hybrid) Viral DNA and RNA. | Sara Javadzadeh, Utkrisht Rajkumar, Nam Nguyen, Shahab Sarmashghi, Jens Luebeck, Jingbo Shang, Vineet Bafna | NAR Genomics And Bioinformatics | 2022-04-26 |
| Antibiotic Activity Altered by Competitive Interactions Between Two Coral Reef-Associated Bacteria. | Samantha J Mascuch, Alyssa Demko, Samson Viulu, Joape Ginigini, Katy Soapi, Paul Jensen, Julia Kubanek | Microbial Ecology | 2022-04-23 |
| foodMASST a mass spectrometry search tool for foods and beverages. | Kiana A West, Robin Schmid, Julia M Gauglitz, Mingxun Wang, Pieter C Dorrestein | NPJ Science Of Food | 2022-04-20 |
| Early microbial markers of periodontal and cardiometabolic diseases in ORIGINS. | Clarisse Marotz, Rebecca Molinsky, Cameron Martino, Bruno Bohn, Sumith Roy, Michael Rosenbaum, Moïse Desvarieux, Melana Yuzefpolskaya, Bruce J Paster, David R Jacobs, Paolo C Colombo, Panos N Papapanou, Rob Knight, Ryan T Demmer | NPJ Biofilms And Microbiomes | 2022-04-20 |
| The impact of maternal asthma on the preterm infants' gut metabolome and microbiome (MAP study). | Shiyu S Bai-Tong, Megan S Thoemmes, Kelly C Weldon, Diba Motazavi, Jessica Kitsen, Shalisa Hansen, Annalee Furst, Bob Geng, Se Jin Song, Jack A Gilbert, Lars Bode, Pieter C Dorrestein, Rob Knight, Sydney A Leibel, Sandra L Leibel | Scientific Reports | 2022-04-19 |
| Memory B-Cell Development After Asymptomatic or Mild Symptomatic SARS-CoV-2 Infection. | Yu Kato, Nathaniel I Bloom, Peifang Sun, Corey A Balinsky, Qi Qiu, Ying Cheng, Vihasi Jani, Megan A Schilling, Carl W Goforth, Dawn L Weir, Irene Ramos, Stuart C Sealfon, Andrew G Letizia, Shane Crotty | The Journal Of Infectious Diseases | 2022-04-17 |
| Menopause Is Associated with an Altered Gut Microbiome and Estrobolome, with Implications for Adverse Cardiometabolic Risk in the Hispanic Community Health Study/Study of Latinos. | Brandilyn A Peters, Juan Lin, Qibin Qi, Mykhaylo Usyk, Carmen R Isasi, Yasmin Mossavar-Rahmani, Carol A Derby, Nanette Santoro, Krista M Perreira, Martha L Daviglus, Michelle A Kominiarek, Jianwen Cai, Rob Knight, Robert D Burk, Robert C Kaplan | MSystems | 2022-04-13 |
| Impact of Clopidogrel on Clinical Outcomes in Patients with Staphylococcus aureus Bacteremia: a National Retrospective Cohort Study. | Aisling R Caffrey, Haley J Appaneal, Kerry L LaPlante, Vrishali V Lopes, Erlinda R Ulloa, Victor Nizet, George Sakoulas | Antimicrobial Agents And Chemotherapy | 2022-04-13 |
| Symptom improvement with mirabegron treatment is associated with urobiome changes in adult women. | Thomas Halverson, Elizabeth R Mueller, Linda Brubaker, Alan J Wolfe | International Urogynecology Journal | 2022-04-12 |
| P53 deficiency affects cholesterol esterification to exacerbate hepatocarcinogenesis. | Yahui Zhu, Li Gu, Xi Lin, Xinyi Zhou, Bingjun Lu, Cheng Liu, Yajun Li, Edward V Prochownik, Michael Karin, Fubing Wang, Youjun Li | Hepatology (Baltimore, Md.) | 2022-04-10 |
| Unlocking capacities of genomics for the COVID-19 response and future pandemics. | Sergey Knyazev, Karishma Chhugani, Varuni Sarwal, Ram Ayyala, Harman Singh, Smruthi Karthikeyan, Dhrithi Deshpande, Pelin Icer Baykal, Zoia Comarova, Angela Lu, Yuri Porozov, Tetyana I Vasylyeva, Joel O Wertheim, Braden T Tierney, Charles Y Chiu, Ren Sun, Aiping Wu, Malak S Abedalthagafi, Victoria M Pak, Shivashankar H Nagaraj, Adam L Smith, Pavel Skums, Bogdan Pasaniuc, Andrey Komissarov, Christopher E Mason, Eric Bortz, Philippe Lemey, Fyodor Kondrashov, Niko Beerenwinkel, Tommy Tsan-Yuk Lam, Nicholas C Wu, Alex Zelikovsky, Rob Knight, Keith A Crandall, Serghei Mangul | Nature Methods | 2022-04-08 |
| Mapping genomic loci implicates genes and synaptic biology in schizophrenia. | Vassily Trubetskoy, Antonio F Pardiñas, Ting Qi, Georgia Panagiotaropoulou, Swapnil Awasthi, Tim B Bigdeli, Julien Bryois, Chia-Yen Chen, Charlotte A Dennison, Lynsey S Hall, Max Lam, Kyoko Watanabe, Oleksandr Frei, Tian Ge, Janet C Harwood, Frank Koopmans, Sigurdur Magnusson, Alexander L Richards, Julia Sidorenko, Yang Wu, Jian Zeng, Jakob Grove, Minsoo Kim, Zhiqiang Li, Georgios Voloudakis, Wen Zhang, Mark Adams, Ingrid Agartz, Elizabeth G Atkinson, Esben Agerbo, Mariam Al Eissa, Margot Albus, Madeline Alexander, Behrooz Z Alizadeh, Köksal Alptekin, Thomas D Als, Farooq Amin, Volker Arolt, Manuel Arrojo, Lavinia Athanasiu, Maria Helena Azevedo, Silviu A Bacanu, Nicholas J Bass, Martin Begemann, Richard A Belliveau, Judit Bene, Beben Benyamin, Sarah E Bergen, Giuseppe Blasi, Julio Bobes, Stefano Bonassi, Alice Braun, Rodrigo Affonseca Bressan, Evelyn J Bromet, Richard Bruggeman, Peter F Buckley, Randy L 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| Sialoglycan binding patterns of bacterial AB toxin B subunits correlate with host range and toxicity, indicating evolution independent of A subunits. | Naazneen Khan, Aniruddha Sasmal, Zahra Khedri, Patrick Secrest, Andrea Verhagen, Saurabh Srivastava, Nissi Varki, Xi Chen, Hai Yu, Travis Beddoe, Adrienne W Paton, James C Paton, Ajit Varki | The Journal Of Biological Chemistry | 2022-04-07 |
| Microbe Profile: : natural products and the evolution of a unique marine bacterium. | Paul R Jensen | Microbiology (Reading, England) | 2022-04-05 |
| Involvement of Qa-1/HLA-E-Restricted CD8+ T Cells in Anti-Microbe and Anti-Cancer Immunity as Well as in Immune Regulation. | Huiming Sheng, Suryasarathi Dasgupta, Vipin Chaturvedi Kumar | Critical Reviews In Immunology | 2022-04-05 |
| Factors associated with COVID-19 vaccine intent among Latino SNAP participants in Southern California. | Vanessa P Scott, Sarah Hiller-Venegas, Kate Edra, Joe Prickitt, Yesenia Esquivel, Blanca Melendrez, Kyung E Rhee | BMC Public Health | 2022-04-05 |
| Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy. | Qiyun Zhu, Shi Huang, Antonio Gonzalez, Imran McGrath, Daniel McDonald, Niina Haiminen, George Armstrong, Yoshiki Vázquez-Baeza, Julian Yu, Justin Kuczynski, Gregory D Sepich-Poore, Austin D Swafford, Promi Das, Justin P Shaffer, Franck Lejzerowicz, Pedro Belda-Ferre, Aki S Havulinna, Guillaume Méric, Teemu Niiranen, Leo Lahti, Veikko Salomaa, Ho-Cheol Kim, Mohit Jain, Michael Inouye, Jack A Gilbert, Rob Knight | MSystems | 2022-04-04 |
| Simple and practical sialoglycan encoding system reveals vast diversity in nature and identifies a universal sialoglycan-recognizing probe derived from AB5 toxin B subunits. | Aniruddha Sasmal, Naazneen Khan, Zahra Khedri, Benjamin P Kellman, Saurabh Srivastava, Andrea Verhagen, Hai Yu, Anders Bech Bruntse, Sandra Diaz, Nissi Varki, Travis Beddoe, Adrienne W Paton, James C Paton, Xi Chen, Nathan E Lewis, Ajit Varki | Glycobiology | 2022-04-04 |
| Intestinal virome in patients with alcohol use disorder and after abstinence. | Cynthia L Hsu, Xinlian Zhang, Lu Jiang, Sonja Lang, Phillipp Hartmann, David Pride, Derrick E Fouts, Peter Stärkel, Bernd Schnabl | Hepatology Communications | 2022-04-02 |
| Complete genomic and epigenetic maps of human centromeres. | Nicolas Altemose, Glennis A Logsdon, Andrey V Bzikadze, Pragya Sidhwani, Sasha A Langley, Gina V Caldas, Savannah J Hoyt, Lev Uralsky, Fedor D Ryabov, Colin J Shew, Michael E G Sauria, Matthew Borchers, Ariel Gershman, Alla Mikheenko, Valery A Shepelev, Tatiana Dvorkina, Olga Kunyavskaya, Mitchell R Vollger, Arang Rhie, Ann M McCartney, Mobin Asri, Ryan Lorig-Roach, Kishwar Shafin, Julian K Lucas, Sergey Aganezov, Daniel Olson, Leonardo Gomes de Lima, Tamara Potapova, Gabrielle A Hartley, Marina Haukness, Peter Kerpedjiev, Fedor Gusev, Kristof Tigyi, Shelise Brooks, Alice Young, Sergey Nurk, Sergey Koren, Sofie R Salama, Benedict Paten, Evgeny I Rogaev, Aaron Streets, Gary H Karpen, Abby F Dernburg, Beth A Sullivan, Aaron F Straight, Travis J Wheeler, Jennifer L Gerton, Evan E Eichler, Adam M Phillippy, Winston Timp, Megan Y Dennis, Rachel J O'Neill, Justin M Zook, Michael C Schatz, Pavel A Pevzner, Mark Diekhans, Charles H Langley, Ivan A Alexandrov, Karen H Miga | Science (New York, N.Y.) | 2022-04-01 |
| The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients. | Carlos G Gonzalez, Robert H Mills, Melissa C Kordahi, Marvic Carrillo-Terrazas, Henrry Secaira-Morocho, Christella E Widjaja, Matthew S Tsai, Yash Mittal, Brian A Yee, Fernando Vargas, Kelly Weldon, Julia M Gauglitz, Clara Delaroque, Consuelo Sauceda, Leigh-Ana Rossitto, Gail Ackermann, Gregory Humphrey, Austin D Swafford, Corey A Siegel, Jay C Buckey, Laura E Raffals, Charlotte Sadler, Peter Lindholm, Kathleen M Fisch, Mark Valaseck, Arief Suriawinata, Gene W Yeo, Pradipta Ghosh, John T Chang, Hiutung Chu, Pieter Dorrestein, Qiyun Zhu, Benoit Chassaing, Rob Knight, David J Gonzalez, Parambir S Dulai | Cellular And Molecular Gastroenterology And Hepatology | 2022-04-01 |
| Preserved SARS-CoV-2 Vaccine Cell-Mediated Immunogenicity in Patients With Inflammatory Bowel Disease on Immune-Modulating Therapies. | Brigid S Boland, Benjamin Goodwin, Zeli Zhang, Nathaniel Bloom, Yu Kato, Jennifer Neill, Helen Le, Tiffani Tysl, Angelina E Collins, Parambir S Dulai, Siddharth Singh, Nghia H Nguyen, Alba Grifoni, Alessandro Sette, Daniela Weiskopf, John T Chang, Jennifer M Dan | Clinical And Translational Gastroenterology | 2022-04-01 |
| Mistaken MIS-C: A Case Series of Bacterial Enteritis Mimicking MIS-C. | Zephyr D Dworsky, Jordan E Roberts, Mary Beth F Son, Adriana H Tremoulet, Jane W Newburger, Jane C Burns | The Pediatric Infectious Disease Journal | 2022-04-01 |
| Machine learning from Pseudomonas aeruginosa transcriptomes identifies independently modulated sets of genes associated with known transcriptional regulators. | Akanksha Rajput, Hannah Tsunemoto, Anand V Sastry, Richard Szubin, Kevin Rychel, Joseph Sugie, Joe Pogliano, Bernhard O Palsson | Nucleic Acids Research | 2022-03-31 |
| The complete sequence of a human genome. | Sergey Nurk, Sergey Koren, Arang Rhie, Mikko Rautiainen, Andrey V Bzikadze, Alla Mikheenko, Mitchell R Vollger, Nicolas Altemose, Lev Uralsky, Ariel Gershman, Sergey Aganezov, Savannah J Hoyt, Mark Diekhans, Glennis A Logsdon, Michael Alonge, Stylianos E Antonarakis, Matthew Borchers, Gerard G Bouffard, Shelise Y Brooks, Gina V Caldas, Nae-Chyun Chen, Haoyu Cheng, Chen-Shan Chin, William Chow, Leonardo G de Lima, Philip C Dishuck, Richard Durbin, Tatiana Dvorkina, Ian T Fiddes, Giulio Formenti, Robert S Fulton, Arkarachai Fungtammasan, Erik Garrison, Patrick G S Grady, Tina A Graves-Lindsay, Ira M Hall, Nancy F Hansen, Gabrielle A Hartley, Marina Haukness, Kerstin Howe, Michael W Hunkapiller, Chirag Jain, Miten Jain, Erich D Jarvis, Peter Kerpedjiev, Melanie Kirsche, Mikhail Kolmogorov, Jonas Korlach, Milinn Kremitzki, Heng Li, Valerie V Maduro, Tobias Marschall, Ann M McCartney, Jennifer McDaniel, Danny E Miller, James C Mullikin, Eugene W Myers, Nathan D Olson, Benedict Paten, Paul Peluso, Pavel A Pevzner, David Porubsky, Tamara Potapova, Evgeny I Rogaev, Jeffrey A Rosenfeld, Steven L Salzberg, Valerie A Schneider, Fritz J Sedlazeck, Kishwar Shafin, Colin J Shew, Alaina Shumate, Ying Sims, Arian F A Smit, Daniela C Soto, Ivan Sović, Jessica M Storer, Aaron Streets, Beth A Sullivan, Françoise Thibaud-Nissen, James Torrance, Justin Wagner, Brian P Walenz, Aaron Wenger, Jonathan M D Wood, Chunlin Xiao, Stephanie M Yan, Alice C Young, Samantha Zarate, Urvashi Surti, Rajiv C McCoy, Megan Y Dennis, Ivan A Alexandrov, Jennifer L Gerton, Rachel J O'Neill, Winston Timp, Justin M Zook, Michael C Schatz, Evan E Eichler, Karen H Miga, Adam M Phillippy | Science (New York, N.Y.) | 2022-03-31 |
| Obesity alters pathology and treatment response in inflammatory disease. | Sagar P Bapat, Caroline Whitty, Cody T Mowery, Yuqiong Liang, Arum Yoo, Zewen Jiang, Michael C Peters, Ling-Juan Zhang, Ian Vogel, Carmen Zhou, Vinh Q Nguyen, Zhongmei Li, Christina Chang, Wandi S Zhu, Annette T Hastie, Helen He, Xin Ren, Wenli Qiu, Sarah G Gayer, Chang Liu, Eun Jung Choi, Marlys Fassett, Jarish N Cohen, Jamie L Sturgill, Laura E Crotty Alexander, Jae Myoung Suh, Christopher Liddle, Annette R Atkins, Ruth T Yu, Michael Downes, Sihao Liu, Barbara S Nikolajczyk, In-Kyu Lee, Emma Guttman-Yassky, K Mark Ansel, Prescott G Woodruff, John V Fahy, Dean Sheppard, Richard L Gallo, Chun Jimmie Ye, Ronald M Evans, Ye Zheng, Alexander Marson | Nature | 2022-03-30 |
| Metabolic Profiling of Interspecies Interactions During Sessile Bacterial Cultivation Reveals Growth and Sporulation Induction in in Response to . | Jakob Herschend, Madeleine Ernst, Klaus Koren, Alexey V Melnik, Ricardo R da Silva, Henriette L Røder, Zacharias B V Damholt, Per Hägglund, Birte Svensson, Søren J Sørensen, Michael Kühl, Pieter C Dorrestein, Mette Burmølle | Frontiers In Cellular And Infection Microbiology | 2022-03-29 |
| Synthetic 3'-UTR valves for optimal metabolic flux control in Escherichia coli. | Donghui Choe, Kangsan Kim, Minjeong Kang, Seung-Goo Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | Nucleic Acids Research | 2022-03-29 |
| Risk factors for COVID-19-related mortality in hospitalized children and adolescents with diabetes mellitus: An observational retrospective cohort study. | Eduardo A Oliveira, Robert H Mak, Enrico A Colosimo, Ana Carmen Q Mendonça, Mariana A Vasconcelos, Hercílio Martelli-Júnior, Ludmila R Silva, Maria Christina L Oliveira, Clara C Pinhati, Ana Cristina Simões E Silva | Pediatric Diabetes | 2022-03-27 |
| The ViReflow pipeline enables user friendly large scale viral consensus genome reconstruction. | Niema Moshiri, Kathleen M Fisch, Amanda Birmingham, Peter DeHoff, Gene W Yeo, Kristen Jepsen, Louise C Laurent, Rob Knight | Scientific Reports | 2022-03-24 |
| High Sensitivity, Rapid Detection of Virus in High Traffic Environments. | Lauren Waller, Zhilin Guo, Rui Tang, Zunming Zhang, Edward Wang, Jarred Yasuhara-Bell, Louise Laurent, Yu-Hwa Lo | Frontiers In Bioengineering And Biotechnology | 2022-03-24 |
| Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq. | Sara E Vazquez, Sabrina A Mann, Aaron Bodansky, Andrew F Kung, Zoe Quandt, Elise M N Ferré, Nils Landegren, Daniel Eriksson, Paul Bastard, Shen-Ying Zhang, Jamin Liu, Anthea Mitchell, Caleigh Mandel-Brehm, Brenda Miao, Gavin Sowa, Kelsey Zorn, Alice Y Chan, Chisato Shimizu, Adriana Tremoulet, Kara Lynch, Michael R Wilson, Olle Kampe, Kerry Dobbs, Ottavia M Delmonte, Luigi D Notarangelo, Jane C Burns, Jean-Laurent Casanova, Michail S Lionakis, Troy R Torgerson, Mark S Anderson, Joseph L DeRisi | BioRxiv : The Preprint Server For Biology | 2022-03-24 |
| Potent Activity of Ertapenem Plus Cefazolin Within Staphylococcal Biofilms: A Contributing Factor in the Treatment of Methicillin-Susceptible Endocarditis. | Jessica Gilbertie, Erlinda R Ulloa, Jennifer C Daiker, Khanh Nguyen, Dan Smelter, Warren Rose, Matthew Geriak, Lauren V Schnabel, Victor Nizet, George Sakoulas | Open Forum Infectious Diseases | 2022-03-23 |
| Early prediction of incident liver disease using conventional risk factors and gut-microbiome-augmented gradient boosting. | Yang Liu, Guillaume Méric, Aki S Havulinna, Shu Mei Teo, Fredrik Åberg, Matti Ruuskanen, Jon Sanders, Qiyun Zhu, Anupriya Tripathi, Karin Verspoor, Susan Cheng, Mohit Jain, Pekka Jousilahti, Yoshiki Vázquez-Baeza, Rohit Loomba, Leo Lahti, Teemu Niiranen, Veikko Salomaa, Rob Knight, Michael Inouye | Cell Metabolism | 2022-03-22 |
| Microbiomes of Hadal Fishes across Trench Habitats Contain Similar Taxa and Known Piezophiles. | Jessica M Blanton, Logan M Peoples, Mackenzie E Gerringer, Caroline M Iacuaniello, Natalya D Gallo, Thomas D Linley, Alan J Jamieson, Jeffrey C Drazen, Douglas H Bartlett, Eric E Allen | MSphere | 2022-03-21 |
| Machine Learning of All Mycobacterium tuberculosis H37Rv RNA-seq Data Reveals a Structured Interplay between Metabolism, Stress Response, and Infection. | Reo Yoo, Kevin Rychel, Saugat Poudel, Tahani Al-Bulushi, Yuan Yuan, Siddharth Chauhan, Cameron Lamoureux, Bernhard O Palsson, Anand Sastry | MSphere | 2022-03-21 |
| PI3K-α/mTOR/BRD4 inhibitor alone or in combination with other anti-virals blocks replication of SARS-CoV-2 and its variants of concern including Delta and Omicron. | Arpan Acharya, Anup S Pathania, Kabita Pandey, Michellie Thurman, Kendra R Vann, Tatiana G Kutateladze, Kishore B Challagundala, Donald L Durden, Siddappa N Byrareddy | Clinical And Translational Medicine | 2022-03-20 |
| Correction to: Precision medicine in perinatal depression in light of the human microbiome. | Beatriz Peñalver Bernabé, Pauline M Maki, Shannon M Dowty, Mariana Lauren Cralle Salas, Zainab Shah, Jack A Gilbert | Psychopharmacology | 2022-03-18 |
| Age-associated impairment of T cell immunity is linked to sex-dimorphic elevation of N-glycan branching. | Haik Mkhikian, Ken L Hayama, Khachik Khachikyan, Carey Li, Raymond W Zhou, Judy Pawling, Suzi Klaus, Phuong Q N Tran, Kim M Ly, Andrew D Gong, Hayk Saryan, Jasper L Hai, David Grigoryan, Philip L Lee, Barbara L Newton, Manuela Raffatellu, James W Dennis, Michael Demetriou | Nature Aging | 2022-03-18 |
| Global urban environmental change drives adaptation in white clover. | James S Santangelo, Rob W Ness, Beata Cohan, Connor R Fitzpatrick, Simon G Innes, Sophie Koch, Lindsay S Miles, Samreen Munim, Pedro R Peres-Neto, Cindy Prashad, Alex T Tong, Windsor E Aguirre, Philips O Akinwole, Marina Alberti, Jackie Álvarez, Jill T Anderson, Joseph J Anderson, Yoshino Ando, Nigel R Andrew, Fabio Angeoletto, Daniel N Anstett, Julia Anstett, Felipe Aoki-Gonçalves, A Z Andis Arietta, Mary T K Arroyo, Emily J Austen, Fernanda Baena-Díaz, Cory A Barker, Howard A Baylis, Julia M Beliz, Alfonso Benitez-Mora, David Bickford, Gabriela Biedebach, Gwylim S Blackburn, Mannfred M A Boehm, Stephen P Bonser, Dries Bonte, Jesse R Bragger, Cristina Branquinho, Kristien I Brans, Jorge C Bresciano, Peta D Brom, Anna Bucharova, Briana Burt, James F Cahill, Katelyn D Campbell, Elizabeth J Carlen, Diego Carmona, Maria Clara Castellanos, Giada Centenaro, Izan Chalen, Jaime A Chaves, Mariana Chávez-Pesqueira, Xiao-Yong Chen, Angela M Chilton, Kristina M Chomiak, Diego F Cisneros-Heredia, Ibrahim K Cisse, Aimée T Classen, Mattheau S Comerford, Camila Cordoba Fradinger, Hannah Corney, Andrew J Crawford, Kerri M Crawford, Maxime Dahirel, Santiago David, Robert De Haan, Nicholas J Deacon, Clare Dean, Ek Del-Val, Eleftherios K Deligiannis, Derek Denney, Margarete A Dettlaff, Michelle F DiLeo, Yuan-Yuan Ding, Moisés E Domínguez-López, Davide M Dominoni, Savannah L Draud, Karen Dyson, Jacintha Ellers, Carlos I Espinosa, Liliana Essi, Mohsen Falahati-Anbaran, Jéssica C F Falcão, Hayden T Fargo, Mark D E Fellowes, Raina M Fitzpatrick, Leah E Flaherty, Pádraic J Flood, María F Flores, Juan Fornoni, Amy G Foster, Christopher J Frost, Tracy L Fuentes, Justin R Fulkerson, Edeline Gagnon, Frauke Garbsch, Colin J Garroway, Aleeza C Gerstein, Mischa M Giasson, E Binney Girdler, Spyros Gkelis, William Godsoe, Anneke M Golemiec, Mireille Golemiec, César González-Lagos, Amanda J Gorton, Kiyoko M Gotanda, Gustaf Granath, Stephan Greiner, Joanna S Griffiths, Filipa Grilo, Pedro E Gundel, Benjamin Hamilton, Joyce M Hardin, Tianhua He, Stephen B Heard, André F Henriques, Melissa Hernández-Poveda, Molly C Hetherington-Rauth, Sarah J Hill, Dieter F Hochuli, Kathryn A Hodgins, Glen R Hood, Gareth R Hopkins, Katherine A Hovanes, Ava R Howard, Sierra C Hubbard, Carlos N Ibarra-Cerdeña, Carlos Iñiguez-Armijos, Paola Jara-Arancio, Benjamin J M Jarrett, Manon Jeannot, Vania Jiménez-Lobato, Mae Johnson, Oscar Johnson, Philip P Johnson, Reagan Johnson, Matthew P Josephson, Meen Chel Jung, Michael G Just, Aapo Kahilainen, Otto S Kailing, Eunice Kariñho-Betancourt, Regina Karousou, Lauren A Kirn, Anna Kirschbaum, Anna-Liisa Laine, Jalene M LaMontagne, Christian Lampei, Carlos Lara, Erica L Larson, Adrián Lázaro-Lobo, Jennifer H Le, Deleon S Leandro, Christopher Lee, Yunting Lei, Carolina A León, Manuel E Lequerica Tamara, Danica C Levesque, Wan-Jin Liao, Megan Ljubotina, Hannah Locke, Martin T Lockett, Tiffany C Longo, Jeremy T Lundholm, Thomas MacGillavry, Christopher R Mackin, Alex R Mahmoud, Isaac A Manju, Janine Mariën, D Nayeli Martínez, Marina Martínez-Bartolomé, Emily K Meineke, Wendy Mendoza-Arroyo, Thomas J S Merritt, Lila Elizabeth L Merritt, Giuditta Migiani, Emily S Minor, Nora Mitchell, Mitra Mohammadi Bazargani, Angela T Moles, Julia D Monk, Christopher M Moore, Paula A Morales-Morales, Brook T Moyers, Miriam Muñoz-Rojas, Jason Munshi-South, Shannon M Murphy, Maureen M Murúa, Melisa Neila, Ourania Nikolaidis, Iva Njunjić, Peter Nosko, Juan Núñez-Farfán, Takayuki Ohgushi, Kenneth M Olsen, Øystein H Opedal, Cristina Ornelas, Amy L Parachnowitsch, Aaron S Paratore, Angela M Parody-Merino, Juraj Paule, Octávio S Paulo, João Carlos Pena, Vera W Pfeiffer, Pedro Pinho, Anthony Piot, Ilga M Porth, Nicholas Poulos, Adriana Puentes, Jiao Qu, Estela Quintero-Vallejo, Steve M Raciti, Joost A M Raeymaekers, Krista M Raveala, Diana J Rennison, Milton C Ribeiro, Jonathan L Richardson, Gonzalo Rivas-Torres, Benjamin J Rivera, Adam B Roddy, Erika Rodriguez-Muñoz, José Raúl Román, Laura S Rossi, Jennifer K Rowntree, Travis J Ryan, Santiago Salinas, Nathan J Sanders, Luis Y Santiago-Rosario, Amy M Savage, J F Scheepens, Menno Schilthuizen, Adam C Schneider, Tiffany Scholier, Jared L Scott, Summer A Shaheed, Richard P Shefferson, Caralee A Shepard, Jacqui A Shykoff, Georgianna Silveira, Alexis D Smith, Lizet Solis-Gabriel, Antonella Soro, Katie V Spellman, Kaitlin Stack Whitney, Indra Starke-Ottich, Jörg G Stephan, Jessica D Stephens, Justyna Szulc, Marta Szulkin, Ayco J M Tack, Ítalo Tamburrino, Tayler D Tate, Emmanuel Tergemina, Panagiotis Theodorou, Ken A Thompson, Caragh G Threlfall, Robin M Tinghitella, Lilibeth Toledo-Chelala, Xin Tong, Léa Uroy, Shunsuke Utsumi, Martijn L Vandegehuchte, Acer VanWallendael, Paula M Vidal, Susana M Wadgymar, Ai-Ying Wang, Nian Wang, Montana L Warbrick, Kenneth D Whitney, Miriam Wiesmeier, J Tristian Wiles, Jianqiang Wu, Zoe A Xirocostas, Zhaogui Yan, Jiahe Yao, Jeremy B Yoder, Owen Yoshida, Jingxiong Zhang, Zhigang Zhao, Carly D Ziter, Matthew P Zuellig, Rebecca A Zufall, Juan E Zurita, Sharon E Zytynska, Marc T J Johnson | Science (New York, N.Y.) | 2022-03-17 |
| What If Not All Metabolites from the Uremic Toxin Generating Pathways Are Toxic? A Hypothesis. | Raymond Vanholder, Sanjay K Nigam, Stéphane Burtey, Griet Glorieux | Toxins | 2022-03-17 |
| Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases. | George Armstrong, Cameron Martino, Justin Morris, Behnam Khaleghi, Jaeyoung Kang, Jeff DeReus, Qiyun Zhu, Daniel Roush, Daniel McDonald, Antonio Gonazlez, Justin P Shaffer, Carolina Carpenter, Mehrbod Estaki, Stephen Wandro, Sean Eilert, Ameen Akel, Justin Eno, Ken Curewitz, Austin D Swafford, Niema Moshiri, Tajana Rosing, Rob Knight | MSystems | 2022-03-16 |
| Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides. | Gajender Aleti, Jordan N Kohn, Emily A Troyer, Kelly Weldon, Shi Huang, Anupriya Tripathi, Pieter C Dorrestein, Austin D Swafford, Rob Knight, Suzi Hong | BMC Microbiology | 2022-03-14 |
| Autoantibodies Against Proteins Previously Associated With Autoimmunity in Adult and Pediatric Patients With COVID-19 and Children With MIS-C. | Peter D Burbelo, Riccardo Castagnoli, Chisato Shimizu, Ottavia M Delmonte, Kerry Dobbs, Valentina Discepolo, Andrea Lo Vecchio, Alfredo Guarino, Francesco Licciardi, Ugo Ramenghi, Emma Rey-Jurado, Cecilia Vial, Gian Luigi Marseglia, Amelia Licari, Daniela Montagna, Camillo Rossi, Gina A Montealegre Sanchez, Karyl Barron, Blake M Warner, John A Chiorini, Yazmin Espinosa, Loreani Noguera, Lesia Dropulic, Meng Truong, Dana Gerstbacher, Sayonara Mató, John Kanegaye, Adriana H Tremoulet, , Eli M Eisenstein, Helen C Su, Luisa Imberti, Maria Cecilia Poli, Jane C Burns, Luigi D Notarangelo, Jeffrey I Cohen | Frontiers In Immunology | 2022-03-11 |
| Structure and Candidate Biosynthetic Gene Cluster of a Manumycin-Type Metabolite from . | Gabriel Castro-Falcón, Kaitlin E Creamer, Alexander B Chase, Min Cheol Kim, Douglas Sweeney, Evgenia Glukhov, William Fenical, Paul R Jensen | Journal Of Natural Products | 2022-03-09 |
| Cancer's second genome: Microbial cancer diagnostics and redefining clonal evolution as a multispecies process: Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution: Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution. | Gregory D Sepich-Poore, Caitlin Guccione, Lucie Laplane, Thomas Pradeu, Kit Curtius, Rob Knight | BioEssays : News And Reviews In Molecular, Cellular And Developmental Biology | 2022-03-06 |
| Human Milk Oligosaccharides and Bacterial Profile Modulate Infant Body Composition during Exclusive Breastfeeding. | Ali S Cheema, Zoya Gridneva, Annalee J Furst, Ana S Roman, Michelle L Trevenen, Berwin A Turlach, Ching T Lai, Lisa F Stinson, Lars Bode, Matthew S Payne, Donna T Geddes | International Journal Of Molecular Sciences | 2022-03-05 |
| Exclusively Breastfed Infant Microbiota Develops over Time and Is Associated with Human Milk Oligosaccharide Intakes. | Ali Sadiq Cheema, Michelle Louise Trevenen, Berwin Ashoka Turlach, Annalee June Furst, Ana Sophia Roman, Lars Bode, Zoya Gridneva, Ching Tat Lai, Lisa Faye Stinson, Matthew Scott Payne, Donna Tracy Geddes | International Journal Of Molecular Sciences | 2022-03-03 |
| Landscape of HIV neutralization susceptibilities across tissue reservoirs. | Chuangqi Wang, Timothy E Schlub, Wen-Han Yu, C Sabrina Tan, Karl Stefic, Sara Gianella, Davey M Smith, Douglas A Lauffenburger, Antoine Chaillon, Boris Julg | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-03-02 |
| Detection of COVID-19 using multimodal data from a wearable device: results from the first TemPredict Study. | Ashley E Mason, Frederick M Hecht, Shakti K Davis, Joseph L Natale, Wendy Hartogensis, Natalie Damaso, Kajal T Claypool, Stephan Dilchert, Subhasis Dasgupta, Shweta Purawat, Varun K Viswanath, Amit Klein, Anoushka Chowdhary, Sarah M Fisher, Claudine Anglo, Karena Y Puldon, Danou Veasna, Jenifer G Prather, Leena S Pandya, Lindsey M Fox, Michael Busch, Casey Giordano, Brittany K Mercado, Jining Song, Rafael Jaimes, Brian S Baum, Brian A Telfer, Casandra W Philipson, Paula P Collins, Adam A Rao, Edward J Wang, Rachel H Bandi, Bianca J Choe, Elissa S Epel, Stephen K Epstein, Joanne B Krasnoff, Marco B Lee, Shi-Wen Lee, Gina M Lopez, Arpan Mehta, Laura D Melville, Tiffany S Moon, Lilianne R Mujica-Parodi, Kimberly M Noel, Michael A Orosco, Jesse M Rideout, Janet D Robishaw, Robert M Rodriguez, Kaushal H Shah, Jonathan H Siegal, Amarnath Gupta, Ilkay Altintas, Benjamin L Smarr | Scientific Reports | 2022-03-02 |
| Immune Response of an Oral Phage Cocktail in a Mouse Model of Ethanol-Induced Liver Disease. | Beatriz Garcia Mendes, Yi Duan, Bernd Schnabl | Viruses | 2022-02-27 |
| System-Level Analysis of Transcriptional and Translational Regulatory Elements in . | Soonkyu Hwang, Namil Lee, Donghui Choe, Yongjae Lee, Woori Kim, Ji Hun Kim, Gahyeon Kim, Hyeseong Kim, Neung-Ho Ahn, Byoung-Hee Lee, Bernhard O Palsson, Byung-Kwan Cho | Frontiers In Bioengineering And Biotechnology | 2022-02-25 |
| The Microbiota-Gut-Brain Axis in Alzheimer's Disease: A Review of Taxonomic Alterations and Potential Avenues for Interventions. | Emily R Murray, Mylon Kemp, Tanya T Nguyen | Archives Of Clinical Neuropsychology : The Official Journal Of The National Academy Of Neuropsychologists | 2022-02-24 |
| Applications and Comparison of Dimensionality Reduction Methods for Microbiome Data. | George Armstrong, Gibraan Rahman, Cameron Martino, Daniel McDonald, Antonio Gonzalez, Gal Mishne, Rob Knight | Frontiers In Bioinformatics | 2022-02-24 |
| viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data. | Dmitry Antipov, Mikhail Rayko, Mikhail Kolmogorov, Pavel A Pevzner | Genome Biology | 2022-02-21 |
| Deoxyvasicinone with Anti-Melanogenic Activity from Marine-Derived sp. CNQ-617. | Se-Eun Lee, Min-Ju Kim, Prima F Hillman, Dong-Chan Oh, William Fenical, Sang-Jip Nam, Kyung-Min Lim | Marine Drugs | 2022-02-21 |
| Viral protein instability enhances host-range evolvability. | Hannah M Strobel, Elijah K Horwitz, Justin R Meyer | PLoS Genetics | 2022-02-17 |
| Intestinal secretory mechanisms and diarrhea. | Stephen Joseph Keely, Kim E Barrett | American Journal Of Physiology. Gastrointestinal And Liver Physiology | 2022-02-16 |
| Antimicrobial production by perifollicular dermal preadipocytes is essential to the pathophysiology of acne. | Alan M O'Neill, Marc C Liggins, Jason S Seidman, Tran H Do, Fengwu Li, Kellen J Cavagnero, Tatsuya Dokoshi, Joyce Y Cheng, Faiza Shafiq, Tissa R Hata, Johann E Gudjonsson, Robert L Modlin, Richard L Gallo | Science Translational Medicine | 2022-02-16 |
| Higher buccal mitochondrial DNA and mitochondrial common deletion number are associated with markers of neurodegeneration and inflammation in cerebrospinal fluid. | Dipesh Solanky, Jerel A Fields, Jennifer E Iudicello, Ronald J Ellis, Donald Franklin, David B Clifford, Benjamin B Gelman, Christina M Marra, Susan Morgello, Leah H Rubin, Igor Grant, Robert K Heaton, Scott L Letendre, Sanjay R Mehta | Journal Of Neurovirology | 2022-02-14 |
| A gut-derived metabolite alters brain activity and anxiety behaviour in mice. | Brittany D Needham, Masanori Funabashi, Mark D Adame, Zhuo Wang, Joseph C Boktor, Jillian Haney, Wei-Li Wu, Claire Rabut, Mark S Ladinsky, Son-Jong Hwang, Yumei Guo, Qiyun Zhu, Jessica A Griffiths, Rob Knight, Pamela J Bjorkman, Mikhail G Shapiro, Daniel H Geschwind, Daniel P Holschneider, Michael A Fischbach, Sarkis K Mazmanian | Nature | 2022-02-14 |
| Adaptive laboratory evolution in S. cerevisiae highlights role of transcription factors in fungal xenobiotic resistance. | Sabine Ottilie, Madeline R Luth, Erich Hellemann, Gregory M Goldgof, Eddy Vigil, Prianka Kumar, Andrea L Cheung, Miranda Song, Karla P Godinez-Macias, Krypton Carolino, Jennifer Yang, Gisel Lopez, Matthew Abraham, Maureen Tarsio, Emmanuelle LeBlanc, Luke Whitesell, Jake Schenken, Felicia Gunawan, Reysha Patel, Joshua Smith, Melissa S Love, Roy M Williams, Case W McNamara, William H Gerwick, Trey Ideker, Yo Suzuki, Dyann F Wirth, Amanda K Lukens, Patricia M Kane, Leah E Cowen, Jacob D Durrant, Elizabeth A Winzeler | Communications Biology | 2022-02-11 |
| From Tryptophan to Toxin: Nature's Convergent Biosynthetic Strategy to Aetokthonotoxin. | Sanjoy Adak, April L Lukowski, Rebecca J B Schäfer, Bradley S Moore | Journal Of The American Chemical Society | 2022-02-10 |
| Efficient in vitro and in vivo RNA editing via recruitment of endogenous ADARs using circular guide RNAs. | Dhruva Katrekar, James Yen, Yichen Xiang, Anushka Saha, Dario Meluzzi, Yiannis Savva, Prashant Mali | Nature Biotechnology | 2022-02-10 |
| Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA. | Erik N Bergstrom, Jens Luebeck, Mia Petljak, Azhar Khandekar, Mark Barnes, Tongwu Zhang, Christopher D Steele, Nischalan Pillay, Maria Teresa Landi, Vineet Bafna, Paul S Mischel, Reuben S Harris, Ludmil B Alexandrov | Nature | 2022-02-09 |
| Machine Learning Predicts Biogeochemistry from Microbial Community Structure in a Complex Model System. | Avishek Dutta, Thomas Goldman, Jeffrey Keating, Ellen Burke, Nicole Williamson, Reinhard Dirmeier, Jeff S Bowman | Microbiology Spectrum | 2022-02-09 |
| Development of a T cell-based immunodiagnostic system to effectively distinguish SARS-CoV-2 infection and COVID-19 vaccination status. | Esther Dawen Yu, Eric Wang, Emily Garrigan, Benjamin Goodwin, Aaron Sutherland, Alison Tarke, James Chang, Rosa Isela Gálvez, Jose Mateus, Sydney I Ramirez, Stephen A Rawlings, Davey M Smith, Gilberto Filaci, April Frazier, Daniela Weiskopf, Jennifer M Dan, Shane Crotty, Alba Grifoni, Alessandro Sette, Ricardo da Silva Antunes | Cell Host & Microbe | 2022-02-08 |
| Targeted isolation of panels of diverse human protective broadly neutralizing antibodies against SARS-like viruses. | Wan-Ting He, Rami Musharrafieh, Ge Song, Katharina Dueker, Longping V Tse, David R Martinez, Alexandra Schäfer, Sean Callaghan, Peter Yong, Nathan Beutler, Jonathan L Torres, Reid M Volk, Panpan Zhou, Meng Yuan, Hejuni Liu, Fabio Anzanello, Tazio Capozzola, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, Ian A Wilson, Yana Safonova, Andrew B Ward, Thomas F Rogers, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees Andrabi | BioRxiv : The Preprint Server For Biology | 2022-02-08 |
| A human antibody reveals a conserved site on beta-coronavirus spike proteins and confers protection against SARS-CoV-2 infection. | Panpan Zhou, Meng Yuan, Ge Song, Nathan Beutler, Namir Shaabani, Deli Huang, Wan-Ting He, Xueyong Zhu, Sean Callaghan, Peter Yong, Fabio Anzanello, Linghang Peng, James Ricketts, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, David Nemazee, John R Teijaro, Thomas F Rogers, Ian A Wilson, Dennis R Burton, Raiees Andrabi | Science Translational Medicine | 2022-02-08 |
| Regulatory perturbations of ribosome allocation in bacteria reshape the growth proteome with a trade-off in adaptation capacity. | David Hidalgo, César A Martínez-Ortiz, Bernhard O Palsson, José I Jiménez, José Utrilla | IScience | 2022-02-07 |
| Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort. | Youwen Qin, Aki S Havulinna, Yang Liu, Pekka Jousilahti, Scott C Ritchie, Alex Tokolyi, Jon G Sanders, Liisa Valsta, Marta Brożyńska, Qiyun Zhu, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Rohit Loomba, Susan Cheng, Mohit Jain, Teemu Niiranen, Leo Lahti, Rob Knight, Veikko Salomaa, Michael Inouye, Guillaume Méric | Nature Genetics | 2022-02-03 |
| A potentially probiotic strain of Enterococcus faecalis from human milk that is avirulent, antibiotic sensitive, and nonbreaching of the gut barrier. | Jasia Anjum, Arsalan Zaidi, Kim Barrett, Muhammad Tariq | Archives Of Microbiology | 2022-02-02 |
| Flux balance analysis of the ammonia-oxidizing bacterium Nitrosomonas europaea ATCC19718 unravels specific metabolic activities while degrading toxic compounds. | Gabriela Canto-Encalada, Diego Tec-Campos, Juan D Tibocha-Bonilla, Karsten Zengler, Alejandro Zepeda, Cristal Zuñiga | PLoS Computational Biology | 2022-02-02 |
| Salmonella respiration turns the tables on propionate. | Gregory T Walker, Manuela Raffatellu | Trends In Microbiology | 2022-02-02 |
| Editorial: Mast Cells: Bridging Host-Microorganism Interactions. | Rommel Chacón-Salinas, Anna Di Nardo, Soman N Abraham | Frontiers In Immunology | 2022-01-31 |
| Gut Microbiome Composition Is Predictive of Incident Type 2 Diabetes in a Population Cohort of 5,572 Finnish Adults. | Matti O Ruuskanen, Pande P Erawijantari, Aki S Havulinna, Yang Liu, Guillaume Méric, Jaakko Tuomilehto, Michael Inouye, Pekka Jousilahti, Veikko Salomaa, Mohit Jain, Rob Knight, Leo Lahti, Teemu J Niiranen | Diabetes Care | 2022-01-31 |
| Using All Our Genomes: Blood-based Liquid Biopsies for the Early Detection of Cancer. | Eddie Adams, Gregory D Sepich-Poore, Sandrine Miller-Montgomery, Rob Knight | View (Beijing, China) | 2022-01-31 |
| Identification of Leucinostatins from sp. as Antiparasitic Agents against . | Jean A Bernatchez, Yun-Seo Kil, Elany Barbosa da Silva, Diane Thomas, Laura-Isobel McCall, Karen L Wendt, Julia M Souza, Jasmin Ackermann, James H McKerrow, Robert H Cichewicz, Jair L Siqueira-Neto | ACS Omega | 2022-01-28 |
| Leapfrog dynamics in phage-bacteria coevolution revealed by joint analysis of cross-infection phenotypes and whole genome sequencing. | Animesh Gupta, Shengyun Peng, Chung Yin Leung, Joshua M Borin, Sarah J Medina, Joshua S Weitz, Justin R Meyer | Ecology Letters | 2022-01-28 |
| Accumulation of microbial DNAs promotes to islet inflammation and β cell abnormalities in obesity in mice. | Hong Gao, Zhenlong Luo, Yudong Ji, Kechun Tang, Zhongmou Jin, Crystal Ly, Dorothy D Sears, Sushil Mahata, Wei Ying | Nature Communications | 2022-01-28 |
| Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity. | Robert H Mills, Parambir S Dulai, Yoshiki Vázquez-Baeza, Consuelo Sauceda, Noëmie Daniel, Romana R Gerner, Lakshmi E Batachari, Mario Malfavon, Qiyun Zhu, Kelly Weldon, Greg Humphrey, Marvic Carrillo-Terrazas, Lindsay DeRight Goldasich, MacKenzie Bryant, Manuela Raffatellu, Robert A Quinn, Andrew T Gewirtz, Benoit Chassaing, Hiutung Chu, William J Sandborn, Pieter C Dorrestein, Rob Knight, David J Gonzalez | Nature Microbiology | 2022-01-27 |
| Predicting fungal infection rate and severity with skin-associated microbial communities on amphibians. | Melissa Y Chen, Jordan G Kueneman, Antonio González, Greg Humphrey, Rob Knight, Valerie J McKenzie | Molecular Ecology | 2022-01-25 |
| Interactions between human milk oligosaccharides, microbiota and immune factors in milk of women with and without mastitis. | Irma Castro, Cristina García-Carral, Annalee Furst, Sadaf Khwajazada, Janneiry García, Rebeca Arroyo, Lorena Ruiz, Juan M Rodríguez, Lars Bode, Leónides Fernández | Scientific Reports | 2022-01-25 |
| SARS-CoV-2 vaccination induces immunological T cell memory able to cross-recognize variants from Alpha to Omicron. | Alison Tarke, Camila H Coelho, Zeli Zhang, Jennifer M Dan, Esther Dawen Yu, Nils Methot, Nathaniel I Bloom, Benjamin Goodwin, Elizabeth Phillips, Simon Mallal, John Sidney, Gilberto Filaci, Daniela Weiskopf, Ricardo da Silva Antunes, Shane Crotty, Alba Grifoni, Alessandro Sette | Cell | 2022-01-24 |
| Stenotrophomonas maltophilia in patients with bronchiectasis: An analysis of the US bronchiectasis and NTM Research Registry. | Mark L Metersky, Radmila Choate, Timothy R Aksamit, Douglas Conrad, Nicole C Lapinel, Diego J Maselli, Pamela J McShane | Respiratory Medicine | 2022-01-24 |
| Colesevelam ameliorates non-alcoholic steatohepatitis and obesity in mice. | Phillipp Hartmann, Yi Duan, Yukiko Miyamoto, Münevver Demir, Sonja Lang, Elda Hasa, Patrick Stern, Dennis Yamashita, Mary Conrad, Lars Eckmann, Bernd Schnabl | Hepatology International | 2022-01-24 |
| Genome-scale analysis of genetic regulatory elements in Streptomyces avermitilis MA-4680 using transcript boundary information. | Yongjae Lee, Namil Lee, Soonkyu Hwang, Woori Kim, Suhyung Cho, Bernhard O Palsson, Byung-Kwan Cho | BMC Genomics | 2022-01-21 |
| Isolation and characterization of Streptomyces bacteriophages and Streptomyces strains encoding biosynthetic arsenals. | Elizabeth T Montaño, Jason F Nideffer, Lauren Brumage, Marcella Erb, Julia Busch, Lynley Fernandez, Alan I Derman, John Paul Davis, Elena Estrada, Sharon Fu, Danielle Le, Aishwarya Vuppala, Cassidy Tran, Elaine Luterstein, Shivani Lakkaraju, Sriya Panchagnula, Caroline Ren, Jennifer Doan, Sharon Tran, Jamielyn Soriano, Yuya Fujita, Pranathi Gutala, Quinn Fujii, Minda Lee, Anthony Bui, Carleen Villarreal, Samuel R Shing, Sean Kim, Danielle Freeman, Vipula Racha, Alicia Ho, Prianka Kumar, Kian Falah, Thomas Dawson, Eray Enustun, Amy Prichard, Ana Gomez, Kanika Khanna, Shelly Trigg, Kit Pogliano, Joe Pogliano | PloS One | 2022-01-21 |
| Ethical Considerations for Gene Drive: Challenges of Balancing Inclusion, Power and Perspectives. | Ana Kormos, Gregory C Lanzaro, Ethan Bier, Vanilson Santos, Lodney Nazaré, João Pinto, Adionilde Aguiar Dos Santos, Anthony A James | Frontiers In Bioengineering And Biotechnology | 2022-01-21 |
| A human antibody reveals a conserved site on beta-coronavirus spike proteins and confers protection against SARS-CoV-2 infection. | Panpan Zhou, Meng Yuan, Ge Song, Nathan Beutler, Namir Shaabani, Deli Huang, Wan-Ting He, Xueyong Zhu, Sean Callaghan, Peter Yong, Fabio Anzanello, Linghang Peng, James Ricketts, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, David Nemazee, John R Teijaro, Thomas F Rogers, Ian A Wilson, Dennis R Burton, Raiees Andrabi | BioRxiv : The Preprint Server For Biology | 2022-01-21 |
| No infectious SARS-CoV-2 in breast milk from a cohort of 110 lactating women. | Paul Krogstad, Deisy Contreras, Hwee Ng, Nicole Tobin, Christina D Chambers, Kerri Bertrand, Lars Bode, Grace M Aldrovandi | Pediatric Research | 2022-01-19 |
| From structure to sequence: Antibody discovery using cryoEM. | Aleksandar Antanasijevic, Charles A Bowman, Robert N Kirchdoerfer, Christopher A Cottrell, Gabriel Ozorowski, Amit A Upadhyay, Kimberly M Cirelli, Diane G Carnathan, Chiamaka A Enemuo, Leigh M Sewall, Bartek Nogal, Fangzhu Zhao, Bettina Groschel, William R Schief, Devin Sok, Guido Silvestri, Shane Crotty, Steven E Bosinger, Andrew B Ward | Science Advances | 2022-01-19 |
| Why sequence all eukaryotes? | Mark Blaxter, John M Archibald, Anna K Childers, Jonathan A Coddington, Keith A Crandall, Federica Di Palma, Richard Durbin, Scott V Edwards, Jennifer A M Graves, Kevin J Hackett, Neil Hall, Erich D Jarvis, Rebecca N Johnson, Elinor K Karlsson, W John Kress, Shigehiro Kuraku, Mara K N Lawniczak, Kerstin Lindblad-Toh, Jose V Lopez, Nancy A Moran, Gene E Robinson, Oliver A Ryder, Beth Shapiro, Pamela S Soltis, Tandy Warnow, Guojie Zhang, Harris A Lewin | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-01-19 |
| The Earth BioGenome Project 2020: Starting the clock. | Harris A Lewin, Stephen Richards, Erez Lieberman Aiden, Miguel L Allende, John M Archibald, Miklós Bálint, Katharine B Barker, Bridget Baumgartner, Katherine Belov, Giorgio Bertorelle, Mark L Blaxter, Jing Cai, Nicolette D Caperello, Keith Carlson, Juan Carlos Castilla-Rubio, Shu-Miaw Chaw, Lei Chen, Anna K Childers, Jonathan A Coddington, Dalia A Conde, Montserrat Corominas, Keith A Crandall, Andrew J Crawford, Federica DiPalma, Richard Durbin, ThankGod E Ebenezer, Scott V Edwards, Olivier Fedrigo, Paul Flicek, Giulio Formenti, Richard A Gibbs, M Thomas P Gilbert, Melissa M Goldstein, Jennifer Marshall Graves, Henry T Greely, Igor V Grigoriev, Kevin J Hackett, Neil Hall, David Haussler, Kristofer M Helgen, Carolyn J Hogg, Sachiko Isobe, Kjetill Sigurd Jakobsen, Axel Janke, Erich D Jarvis, Warren E Johnson, Steven J M Jones, Elinor K Karlsson, Paul J Kersey, Jin-Hyoung Kim, W John Kress, Shigehiro Kuraku, Mara K N Lawniczak, James H Leebens-Mack, Xueyan Li, Kerstin Lindblad-Toh, Xin Liu, Jose V Lopez, Tomas Marques-Bonet, Sophie Mazard, Jonna A K Mazet, Camila J Mazzoni, Eugene W Myers, Rachel J O'Neill, Sadye Paez, Hyun Park, Gene E Robinson, Cristina Roquet, Oliver A Ryder, Jamal S M Sabir, H Bradley Shaffer, Timothy M Shank, Jacob S Sherkow, Pamela S Soltis, Boping Tang, Leho Tedersoo, Marcela Uliano-Silva, Kun Wang, Xiaofeng Wei, Regina Wetzer, Julia L Wilson, Xun Xu, Huanming Yang, Anne D Yoder, Guojie Zhang | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-01-19 |
| Correction to: Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers. | Qiyun Zhu, Qiangchuan Hou, Shi Huang, Qianying Ou, Dongxue Huo, Yoshiki Vázquez-Baeza, Chaoping Cen, Victor Cantu, Mehrbod Estaki, Haibo Chang, Pedro Belda-Ferre, Ho-Cheol Kim, Kaining Chen, Rob Knight, Jiachao Zhang | The ISME Journal | 2022-01-18 |
| Considerations for the Use of Phage Therapy in Clinical Practice. | Gina A Suh, Thomas P Lodise, Pranita D Tamma, Jane M Knisely, Jose Alexander, Saima Aslam, Karen D Barton, Erica Bizzell, Katherine M C Totten, Joseph Campbell, Benjamin K Chan, Scott A Cunningham, Katherine E Goodman, Kerryl Greenwood-Quaintance, Anthony D Harris, Shayla Hesse, Anthony Maresso, Veronique Nussenblatt, David Pride, Michael Rybak, Zoe Sund, David Van Duin, Daria Van Tyne, Robin Patel, | Antimicrobial Agents And Chemotherapy | 2022-01-18 |
| Liver specific, systemic and genetic contributors to alcohol-related liver disease progression. | Bernd Schnabl, Gavin E Arteel, Felix Stickel, Jan Hengstler, Nachiket Vartak, Ahmed Ghallab, Steven Dooley, Yujia Li, Robert F Schwabe | Zeitschrift Fur Gastroenterologie | 2022-01-18 |
| Neuronally-enriched exosomal microRNA-27b mediates acute effects of ibuprofen on reward-related brain activity in healthy adults: a randomized, placebo-controlled, double-blind trial. | Kaiping Burrows, Leandra K Figueroa-Hall, Rayus Kuplicki, Jennifer L Stewart, Ahlam M Alarbi, Rajagopal Ramesh, Jonathan B Savitz, T Kent Teague, Victoria B Risbrough, Martin P Paulus | Scientific Reports | 2022-01-17 |
| Conceptual strategies for characterizing interactions in microbial communities. | Sho M Kodera, Promi Das, Jack A Gilbert, Holly L Lutz | IScience | 2022-01-15 |
| A Charge-Switchable Zwitterionic Peptide for Rapid Detection of SARS-CoV-2 Main Protease. | Zhicheng Jin, Yash Mantri, Maurice Retout, Yong Cheng, Jiajing Zhou, Alec Jorns, Pavla Fajtova, Wonjun Yim, Colman Moore, Ming Xu, Matthew N Creyer, Raina M Borum, Jingcheng Zhou, Zhuohong Wu, Tengyu He, William F Penny, Anthony J O'Donoghue, Jesse V Jokerst | Angewandte Chemie (International Ed. In English) | 2022-01-14 |
| A Dual-Color Fluorescent Probe Allows Simultaneous Imaging of Main and Papain-like Proteases of SARS-CoV-2-Infected Cells for Accurate Detection and Rapid Inhibitor Screening. | Yong Cheng, Raina M Borum, Alex E Clark, Zhicheng Jin, Colman Moore, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Jesse V Jokerst | Angewandte Chemie (International Ed. In English) | 2022-01-14 |
| Gestational insulin resistance is mediated by the gut microbiome-indoleamine 2,3-dioxygenase axis. | Medha Priyadarshini, Guadalupe Navarro, Derek J Reiman, Anukriti Sharma, Kai Xu, Kristen Lednovich, Christopher R Manzella, Md Wasim Khan, Mariana Salas Garcia, Sarah Allard, Barton Wicksteed, George E Chlipala, Barbara Szynal, Beatriz Penalver Bernabe, Pauline M Maki, Ravinder K Gill, Gary H Perdew, Jack Gilbert, Yang Dai, Brian T Layden | Gastroenterology | 2022-01-12 |
| Structure and dynamics of SARS-CoV-2 proofreading exoribonuclease ExoN. | Nicholas H Moeller, Ke Shi, Özlem Demir, Christopher Belica, Surajit Banerjee, Lulu Yin, Cameron Durfee, Rommie E Amaro, Hideki Aihara | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-01-11 |
| Comparison of the First and Second Waves of the Coronavirus Disease 2019 Pandemic in Children and Adolescents in a Middle-Income Country: Clinical Impact Associated with Severe Acute Respiratory Syndrome Coronavirus 2 Gamma Lineage. | Eduardo A Oliveira, Ana Cristina Simões E Silva, Maria Christina L Oliveira, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Debora M Miranda, Daniella B Martelli, Ludmila R Silva, Clara C Pinhati, Hercílio Martelli-Júnior | The Journal Of Pediatrics | 2022-01-11 |
| Optical genome mapping identifies rare structural variations as predisposition factors associated with severe COVID-19. | Nikhil Shri Sahajpal, Chi-Yu Jill Lai, Alex Hastie, Ashis K Mondal, Siavash Raeisi Dehkordi, Caspar I van der Made, Olivier Fedrigo, Farooq Al-Ajli, Sawan Jalnapurkar, Marta Byrska-Bishop, Rashmi Kanagal-Shamanna, Brynn Levy, Maximilian Schieck, Thomas Illig, Silviu-Alin Bacanu, Janet S Chou, Adrienne G Randolph, Amyn M Rojiani, Michael C Zody, Catherine A Brownstein, Alan H Beggs, Vineet Bafna, Erich D Jarvis, Alexander Hoischen, Alka Chaubey, Ravindra Kolhe, | IScience | 2022-01-10 |
| The transcription factor ZIP-1 promotes resistance to intracellular infection in Caenorhabditis elegans. | Vladimir Lažetić, Fengting Wu, Lianne B Cohen, Kirthi C Reddy, Ya-Ting Chang, Spencer S Gang, Gira Bhabha, Emily R Troemel | Nature Communications | 2022-01-10 |
| Inhibition of histamine accumulation by novel histamine-degrading species of sp. isolated from goats and sheep milk. | Safoora Pashangeh, Seyed Shahram Shekarforoush, Mahmoud Aminlari, Saeid Hosseinzadeh, Victor Nizet, Samira Dahesh, Samane Rahmdel | Food Science & Nutrition | 2022-01-09 |
| Comparative Analysis of T Cell Spatial Proteomics and the Influence of HIV Expression. | Aaron L Oom, Charlotte A Stoneham, Mary K Lewinski, Alicia Richards, Jacob M Wozniak, Km Shams-Ud-Doha, David J Gonzalez, Nevan J Krogan, John Guatelli | Molecular & Cellular Proteomics : MCP | 2022-01-08 |
| Roles for the Mycobiome in Liver Disease. | Suling Zeng, Bernd Schnabl | Liver International : Official Journal Of The International Association For The Study Of The Liver | 2022-01-07 |
| An intestinally secreted host factor promotes microsporidia invasion of . | Hala Tamim El Jarkass, Calvin Mok, Michael R Schertzberg, Andrew G Fraser, Emily R Troemel, Aaron W Reinke | ELife | 2022-01-07 |
| A machine-learning algorithm for diagnosis of multisystem inflammatory syndrome in children and Kawasaki disease in the USA: a retrospective model development and validation study. | Jonathan Y Lam, Chisato Shimizu, Adriana H Tremoulet, Emelia Bainto, Samantha C Roberts, Nipha Sivilay, Michael A Gardiner, John T Kanegaye, Alexander H Hogan, Juan C Salazar, Sindhu Mohandas, Jacqueline R Szmuszkovicz, Simran Mahanta, Audrey Dionne, Jane W Newburger, Emily Ansusinha, Roberta L DeBiasi, Shiying Hao, Xuefeng B Ling, Harvey J Cohen, Shamim Nemati, Jane C Burns, , | The Lancet. Digital Health | 2022-01-06 |
| Disparities in telemedicine during COVID-19. | Alexander S Qian, Melody K Schiaffino, Vinit Nalawade, Lara Aziz, Fernanda V Pacheco, Bao Nguyen, Peter Vu, Sandip P Patel, Maria Elena Martinez, James D Murphy | Cancer Medicine | 2022-01-05 |
| Human Milk Oligosaccharides Reduce Murine Group B Vaginal Colonization with Minimal Impact on the Vaginal Microbiota. | Marlyd E Mejia, Samantha Ottinger, Alison Vrbanac, Priyanka Babu, Jacob J Zulk, David Moorshead, Lars Bode, Victor Nizet, Kathryn A Patras | MSphere | 2022-01-05 |
| Machine Learning Applied to Omics Datasets Predicts Mortality in Patients with Alcoholic Hepatitis. | Bei Gao, Tsung-Chin Wu, Sonja Lang, Lu Jiang, Yi Duan, Derrick E Fouts, Xinlian Zhang, Xin-Ming Tu, Bernd Schnabl | Metabolites | 2022-01-05 |
| Gut Microbiome and Alcohol-associated Liver Disease. | Cyriac A Philips, Bernd Schnabl, Jasmohan S Bajaj | Journal Of Clinical And Experimental Hepatology | 2022-01-04 |
| Pediatric Osteoarticular Infections Caused by Mycobacteria Tuberculosis Complex: A 26-Year Review of Cases in San Diego, CA. | Ian Drobish, Nanda Ramchandar, Vanessa Raabe, Alice Pong, John Bradley, Christopher Cannavino | The Pediatric Infectious Disease Journal | 2022-01-03 |
| Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities. | Derek M Bickhart, Mikhail Kolmogorov, Elizabeth Tseng, Daniel M Portik, Anton Korobeynikov, Ivan Tolstoganov, Gherman Uritskiy, Ivan Liachko, Shawn T Sullivan, Sung Bong Shin, Alvah Zorea, Victòria Pascal Andreu, Kevin Panke-Buisse, Marnix H Medema, Itzhak Mizrahi, Pavel A Pevzner, Timothy P L Smith | Nature Biotechnology | 2022-01-03 |
| Preface. | Benjamin Bonavida, Vipin Kumar | Critical Reviews In Immunology | 2022-01-01 |
| Contribution of Concurrent Comorbidities to Sepsis-Related Mortality in Preterm Infants ≤32 Weeks of Gestation at an Academic Neonatal Intensive Care Network. | Brian W Barnette, Benjamin T Schumacher, Richard F Armenta, James L Wynn, Andrew Richardson, John S Bradley, Sarah Lazar, Shelley M Lawrence | American Journal Of Perinatology | 2021-12-31 |
| Chlororesistoflavins A and B, Chlorinated Benzopyrene Antibiotics Produced by the Marine-Derived Actinomycete sp. Strain EG32. | Min Cheol Kim, Zhifei Li, Reiko Cullum, Tadeusz F Molinski, Mennat Allah G Eid, Ali M S Hebishy, Ahmed H I Faraag, Ahmed E Abdel Moneim, Mohamed S Abdelfattah, William Fenical | Journal Of Natural Products | 2021-12-30 |
| Possibilities and limits for using the gut microbiome to improve captive animal health. | Jessica Diaz, Aspen T Reese | Animal Microbiome | 2021-12-29 |
| Saccharobisindole, Neoasterric Methyl Ester, and 7-Chloro-4(1H)-quinolone: Three New Compounds Isolated from the Marine Bacterium sp. | Sohee Kim, Tu Cam Le, Sang-Ah Han, Prima F Hillman, Ahreum Hong, Sunghoon Hwang, Young Eun Du, Hiyoung Kim, Dong-Chan Oh, Sun-Shin Cha, Jihye Lee, Sang-Jip Nam, William Fenical | Marine Drugs | 2021-12-29 |
| Genome-Scale Metabolic Modeling Enables In-Depth Understanding of Big Data. | Anurag Passi, Juan D Tibocha-Bonilla, Manish Kumar, Diego Tec-Campos, Karsten Zengler, Cristal Zuniga | Metabolites | 2021-12-24 |
| Extremophile enzyme optimization for low temperature and high salinity are fundamentally incompatible. | Luke Piszkin, Jeff Bowman | Extremophiles : Life Under Extreme Conditions | 2021-12-23 |
| Linking anaerobic gut bacteria and cardiovascular disease. | Joanna Coker, Livia S Zaramela, Karsten Zengler | Nature Microbiology | 2021-12-23 |
| Class Ib MHC-Mediated Immune Interactions Play a Critical Role in Maintaining Mucosal Homeostasis in the Mammalian Large Intestine. | Suryasarathi Dasgupta, Igor Maricic, Jay Tang, Stephen Wandro, Kelly Weldon, Carolina S Carpenter, Lars Eckmann, Jesus Rivera-Nieves, William Sandborn, Rob Knight, Peter Dorrestein, Austin D Swafford, Vipin Kumar | ImmunoHorizons | 2021-12-15 |
| Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions. | Lian Narunsky-Haziza, Gregory D Sepich-Poore, Ilana Livyatan, Omer Asraf, Cameron Martino, Deborah Nejman, Nancy Gavert, Jason E Stajich, Guy Amit, Antonio González, Stephen Wandro, Gili Perry, Ruthie Ariel, Arnon Meltser, Justin P Shaffer, Qiyun Zhu, Nora Balint-Lahat, Iris Barshack, Maya Dadiani, Einav N Gal-Yam, Sandip Pravin Patel, Amir Bashan, Austin D Swafford, Yitzhak Pilpel, Rob Knight, Ravid Straussman | Cell | 2021-12-13 |
| Mammalian gut metabolomes mirror microbiome composition and host phylogeny. | Rachel Gregor, Maraike Probst, Stav Eyal, Alexander Aksenov, Goor Sasson, Igal Horovitz, Pieter C Dorrestein, Michael M Meijler, Itzhak Mizrahi | The ISME Journal | 2021-12-13 |
| Brilliantia kiribatiensis, a new genus and species of Cladophorales (Chlorophyta) from the remote coral reefs of the Southern Line Islands, Pacific Ocean. | Frederik Leliaert, Emily L A Kelly, Jan Janouškovec, Michael D Fox, Maggie D Johnson, Farran M Redfern, Taati Eria, Andreas F Haas, Enric Sala, Stuart A Sandin, Jennifer E Smith | Journal Of Phycology | 2021-12-12 |
| From microbial community structure to metabolic inference using paprica. | Natalia G Erazo, Avishek Dutta, Jeff S Bowman | STAR Protocols | 2021-12-11 |
| Microbial co-occurrence complicates associations of gut microbiome with US immigration, dietary intake and obesity. | Zheng Wang, Mykhaylo Usyk, Yoshiki Vázquez-Baeza, Guo-Chong Chen, Carmen R Isasi, Jessica S Williams-Nguyen, Simin Hua, Daniel McDonald, Bharat Thyagarajan, Martha L Daviglus, Jianwen Cai, Kari E North, Tao Wang, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi | Genome Biology | 2021-12-10 |
| Bicarbonate modulates delafloxacin activity against MDR Staphylococcus aureus and Pseudomonas aeruginosa. | Mische Holland, Elisabet Bjanes, Victor Nizet, Nicholas Dillon | The Journal Of Antimicrobial Chemotherapy | 2021-12-10 |
| Prior Methamphetamine Use Disorder History Does Not Impair Interoceptive Processing of Soft Touch in HIV Infection. | Amanda Bischoff-Grethe, Ronald J Ellis, Susan F Tapert, Martin P Paulus, Igor Grant, Translational Methamphetamine Aids Research Center Tmarc | Viruses | 2021-12-10 |
| The population genetics of collateral resistance and sensitivity. | Sarah M Ardell, Sergey Kryazhimskiy | ELife | 2021-12-10 |
| CRIg on liver macrophages clears pathobionts and protects against alcoholic liver disease. | Yi Duan, Huikuan Chu, Katharina Brandl, Lu Jiang, Suling Zeng, Nairika Meshgin, Eleni Papachristoforou, Josepmaria Argemi, Beatriz G Mendes, Yanhan Wang, Hua Su, Weizhong Sun, Cristina Llorente, Tim Hendrikx, Xiao Liu, Mojgan Hosseini, Tatiana Kisseleva, David A Brenner, Ramon Bataller, Prakash Ramachandran, Michael Karin, Wenxian Fu, Bernd Schnabl | Nature Communications | 2021-12-09 |
| The fecal mycobiome in non-alcoholic fatty liver disease. | Münevver Demir, Sonja Lang, Phillipp Hartmann, Yi Duan, Anna Martin, Yukiko Miyamoto, Marina Bondareva, Xinlian Zhang, Yanhan Wang, Philipp Kasper, Corinna Bang, Christoph Roderburg, Frank Tacke, Hans-Michael Steffen, Tobias Goeser, Andrey Kruglov, Lars Eckmann, Peter Stärkel, Derrick E Fouts, Bernd Schnabl | Journal Of Hepatology | 2021-12-09 |
| Defining and quantifying the core microbiome: Challenges and prospects. | Alexander T Neu, Eric E Allen, Kaustuv Roy | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-12-04 |
| Clean room microbiome complexity impacts planetary protection bioburden. | Ryan Hendrickson, Camilla Urbaniak, Jeremiah J Minich, Heidi S Aronson, Cameron Martino, Ramunas Stepanauskas, Rob Knight, Kasthuri Venkateswaran | Microbiome | 2021-12-04 |
| Seriniquinones as Therapeutic Leads for Treatment of BRAF and NRAS Mutant Melanomas. | Amanda S Hirata, Paula Rezende-Teixeira, João Agostinho Machado-Neto, Paula C Jimenez, James J La Clair, William Fenical, Leticia V Costa-Lotufo | Molecules (Basel, Switzerland) | 2021-12-04 |
| GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. | Daniel Petras, Vanessa V Phelan, Deepa Acharya, Andrew E Allen, Allegra T Aron, Nuno Bandeira, Benjamin P Bowen, Deirdre Belle-Oudry, Simon Boecker, Dale A Cummings, Jessica M Deutsch, Eoin Fahy, Neha Garg, Rachel Gregor, Jo Handelsman, Mirtha Navarro-Hoyos, Alan K Jarmusch, Scott A Jarmusch, Katherine Louie, Katherine N Maloney, Michael T Marty, Michael M Meijler, Itzhak Mizrahi, Rachel L Neve, Trent R Northen, Carlos Molina-Santiago, Morgan Panitchpakdi, Benjamin Pullman, Aaron W Puri, Robin Schmid, Shankar Subramaniam, Monica Thukral, Felipe Vasquez-Castro, Pieter C Dorrestein, Mingxun Wang | Nature Methods | 2021-12-03 |
| A particulate saponin/TLR agonist vaccine adjuvant alters lymph flow and modulates adaptive immunity. | Murillo Silva, Yu Kato, Mariane B Melo, Ivy Phung, Brian L Freeman, Zhongming Li, Kangsan Roh, Jan W Van Wijnbergen, Hannah Watkins, Chiamaka A Enemuo, Brittany L Hartwell, Jason Y H Chang, Shuhao Xiao, Kristen A Rodrigues, Kimberly M Cirelli, Na Li, Sonya Haupt, Aereas Aung, Benjamin Cossette, Wuhbet Abraham, Swati Kataria, Raiza Bastidas, Jinal Bhiman, Caitlyn Linde, Nathaniel I Bloom, Bettina Groschel, Erik Georgeson, Nicole Phelps, Ayush Thomas, Julia Bals, Diane G Carnathan, Daniel Lingwood, Dennis R Burton, Galit Alter, Timothy P Padera, Angela M Belcher, William R Schief, Guido Silvestri, Ruth M Ruprecht, Shane Crotty, Darrell J Irvine | Science Immunology | 2021-12-03 |
| Gut microbiota-driven brain Aβ amyloidosis in mice requires microglia. | Hemraj B Dodiya, Holly L Lutz, Ian Q Weigle, Priyam Patel, Julia Michalkiewicz, Carlos J Roman-Santiago, Can Martin Zhang, Yingxia Liang, Abhinav Srinath, Xulun Zhang, Jessica Xia, Monica Olszewski, Xiaoqiong Zhang, Matthew John Schipma, Eugene B Chang, Rudolph E Tanzi, Jack A Gilbert, Sangram S Sisodia | The Journal Of Experimental Medicine | 2021-12-02 |
| Intestinal commensal microbiota and cytokines regulate Fut2 Paneth cells for gut defense. | Mariko Kamioka, Yoshiyuki Goto, Kiminori Nakamura, Yuki Yokoi, Rina Sugimoto, Shuya Ohira, Yosuke Kurashima, Shingo Umemoto, Shintaro Sato, Jun Kunisawa, Yu Takahashi, Steven E Domino, Jean-Christophe Renauld, Susumu Nakae, Yoichiro Iwakura, Peter B Ernst, Tokiyoshi Ayabe, Hiroshi Kiyono | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-12-02 |
| Siderophore-mediated zinc acquisition enhances enterobacterial colonization of the inflamed gut. | Judith Behnsen, Hui Zhi, Allegra T Aron, Vivekanandan Subramanian, William Santus, Michael H Lee, Romana R Gerner, Daniel Petras, Janet Z Liu, Keith D Green, Sarah L Price, Jose Camacho, Hannah Hillman, Joshua Tjokrosurjo, Nicola P Montaldo, Evelyn M Hoover, Sean Treacy-Abarca, Benjamin A Gilston, Eric P Skaar, Walter J Chazin, Sylvie Garneau-Tsodikova, Matthew B Lawrenz, Robert D Perry, Sean-Paul Nuccio, Pieter C Dorrestein, Manuela Raffatellu | Nature Communications | 2021-12-01 |
| The Fecal Microbiome and Metabolome of Pitt Hopkins Syndrome, a Severe Autism Spectrum Disorder. | Amanda H Dilmore, Daniel McDonald, Tanya T Nguyen, James B Adams, Rosa Krajmalnik-Brown, Emmanuel Elijah, Pieter C Dorrestein, Rob Knight | MSystems | 2021-11-30 |
| A combined EM and proteomic analysis places HIV-1 Vpu at the crossroads of retromer and ESCRT complexes: PTPN23 is a Vpu-cofactor. | Charlotte A Stoneham, Simon Langer, Paul D De Jesus, Jacob M Wozniak, John Lapek, Thomas Deerinck, Andrea Thor, Lars Pache, Sumit K Chanda, David J Gonzalez, Mark Ellisman, John Guatelli | PLoS Pathogens | 2021-11-29 |
| Physicochemical properties determining drug detection in skin. | Wout Bittremieux, Rohit S Advani, Alan K Jarmusch, Shaden Aguirre, Aileen Lu, Pieter C Dorrestein, Shirley M Tsunoda | Clinical And Translational Science | 2021-11-28 |
| Differential Fecal Microbiome Dysbiosis after Equivalent Traumatic Brain Injury in Aged Versus Young Adult Mice. | Booker T Davis, Mecca B A R Islam, Promi Das, Jack A Gilbert, Karen J Ho, Steven J Schwulst | Journal Of Experimental Neurology | 2021-11-26 |
| Redrawing therapeutic boundaries: microbiota and cancer. | Jonathan Sholl, Gregory D Sepich-Poore, Rob Knight, Thomas Pradeu | Trends In Cancer | 2021-11-26 |
| Host Factors in Dysregulation of the Gut Barrier Function during Alcohol-Associated Liver Disease. | Luca Maccioni, Isabelle A Leclercq, Bernd Schnabl, Peter Stärkel | International Journal Of Molecular Sciences | 2021-11-24 |
| Vertical Inheritance Facilitates Interspecies Diversification in Biosynthetic Gene Clusters and Specialized Metabolites. | Alexander B Chase, Douglas Sweeney, Mitchell N Muskat, Dulce G Guillén-Matus, Paul R Jensen | MBio | 2021-11-23 |
| Comparison of fecal and oral collection methods for studies of the human microbiota in two Iranian cohorts. | Zeni Wu, Autumn G Hullings, Reza Ghanbari, Arash Etemadi, Yunhu Wan, Bin Zhu, Hossein Poustchi, Behnam Bagheri Fahraji, Mohammad Javad Zare Sakhvidi, Jianxin Shi, Rob Knight, Reza Malekzadeh, Rashmi Sinha, Emily Vogtmann | BMC Microbiology | 2021-11-22 |
| Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals. | Linda Wegley Kelly, Craig E Nelson, Daniel Petras, Irina Koester, Zachary A Quinlan, Milou G I Arts, Louis-Felix Nothias, Jacqueline Comstock, Brandie M White, Ellen C Hopmans, Fleur C van Duyl, Craig A Carlson, Lihini I Aluwihare, Pieter C Dorrestein, Andreas F Haas | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-11-22 |
| Native mass spectrometry-based metabolomics identifies metal-binding compounds. | Allegra T Aron, Daniel Petras, Robin Schmid, Julia M Gauglitz, Isabell Büttel, Luis Antelo, Hui Zhi, Sean-Paul Nuccio, Christina C Saak, Kien P Malarney, Eckhard Thines, Rachel J Dutton, Lihini I Aluwihare, Manuela Raffatellu, Pieter C Dorrestein | Nature Chemistry | 2021-11-18 |
| Severe delayed hypersensitivity reactions to IL-1 and IL-6 inhibitors link to common HLA-DRB1*15 alleles. | Vivian E Saper, Michael J Ombrello, Adriana H Tremoulet, Gonzalo Montero-Martin, Sampath Prahalad, Scott Canna, Chisato Shimizu, Gail Deutsch, Serena Y Tan, Elaine F Remmers, Dimitri Monos, Timothy Hahn, Omkar K Phadke, Elaine Cassidy, Ian Ferguson, Vamsee Mallajosyula, Jianpeng Xu, Jaime S Rosa Duque, Gilbert T Chua, Debopam Ghosh, Ann Marie Szymanski, Danielle Rubin, Jane C Burns, Lu Tian, Marcelo A Fernandez-Vina, Elizabeth D Mellins, Jill A Hollenbach, , | Annals Of The Rheumatic Diseases | 2021-11-17 |
| Reporting guidelines for human microbiome research: the STORMS checklist. | Chloe Mirzayi, Audrey Renson, , , Fatima Zohra, Shaimaa Elsafoury, Ludwig Geistlinger, Lora J Kasselman, Kelly Eckenrode, Janneke van de Wijgert, Amy Loughman, Francine Z Marques, David A MacIntyre, Manimozhiyan Arumugam, Rimsha Azhar, Francesco Beghini, Kirk Bergstrom, Ami Bhatt, Jordan E Bisanz, Jonathan Braun, Hector Corrada Bravo, Gregory A Buck, Frederic Bushman, David Casero, Gerard Clarke, Maria Carmen Collado, Paul D Cotter, John F Cryan, Ryan T Demmer, Suzanne Devkota, Eran Elinav, Juan S Escobar, Jennifer Fettweis, Robert D Finn, Anthony A Fodor, Sofia Forslund, Andre Franke, Cesare Furlanello, Jack Gilbert, Elizabeth Grice, Benjamin Haibe-Kains, Scott Handley, Pamela Herd, Susan Holmes, Jonathan P Jacobs, Lisa Karstens, Rob Knight, Dan Knights, Omry Koren, Douglas S Kwon, Morgan Langille, Brianna Lindsay, Dermot McGovern, Alice C McHardy, Shannon McWeeney, Noel T Mueller, Luigi Nezi, Matthew Olm, Noah Palm, Edoardo Pasolli, Jeroen Raes, Matthew R Redinbo, Malte Rühlemann, R Balfour Sartor, Patrick D Schloss, Lynn Schriml, Eran Segal, Michelle Shardell, Thomas Sharpton, Ekaterina Smirnova, Harry Sokol, Justin L Sonnenburg, Sujatha Srinivasan, Louise B Thingholm, Peter J Turnbaugh, Vaibhav Upadhyay, Ramona L Walls, Paul Wilmes, Takuji Yamada, Georg Zeller, Mingyu Zhang, Ni Zhao, Liping Zhao, Wenjun Bao, Aedin Culhane, Viswanath Devanarayan, Joaquin Dopazo, Xiaohui Fan, Matthias Fischer, Wendell Jones, Rebecca Kusko, Christopher E Mason, Tim R Mercer, Susanna-Assunta Sansone, Andreas Scherer, Leming Shi, Shraddha Thakkar, Weida Tong, Russ Wolfinger, Christopher Hunter, Nicola Segata, Curtis Huttenhower, Jennifer B Dowd, Heidi E Jones, Levi Waldron | Nature Medicine | 2021-11-17 |
| Gut microbiome in Parkinson's disease: New insights from meta-analysis. | Tzi Shin Toh, Chun Wie Chong, Shen-Yang Lim, Jeff Bowman, Mihai Cirstea, Chin-Hsien Lin, Chieh-Chang Chen, Silke Appel-Cresswell, B Brett Finlay, Ai Huey Tan | Parkinsonism & Related Disorders | 2021-11-17 |
| Bacteriophages and their potential for treatment of gastrointestinal diseases. | Yi Duan, Ry Young, Bernd Schnabl | Nature Reviews. Gastroenterology & Hepatology | 2021-11-15 |
| High-resolution in situ analysis of Cas9 germline transcript distributions in gene-drive Anopheles mosquitoes. | Gerard Terradas, Anita Hermann, Anthony A James, William McGinnis, Ethan Bier | G3 (Bethesda, Md.) | 2021-11-15 |
| The Human-Milk Oligosaccharide Profile of Lactating Women in Dhaka, Bangladesh. | Lisa G Pell, Eric O Ohuma, Chloe Yonemitsu, Miranda G Loutet, Tahmeed Ahmed, Abdullah Al Mahmud, Meghan B Azad, Lars Bode, Daniel E Roth | Current Developments In Nutrition | 2021-11-13 |
| Microbial-Driven Immunological Memory and Its Potential Role in Microbiome Editing for the Prevention of Colorectal Cancer. | Laure Campillo-Gimenez, David Rios-Covian, Jesus Rivera-Nieves, Hiroshi Kiyono, Hiutung Chu, Peter B Ernst | Frontiers In Cellular And Infection Microbiology | 2021-11-12 |
| Escherichia coli Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational Data | Patrick V Phaneuf, Daniel C Zielinski, James T Yurkovich, Josefin Johnsen, Richard Szubin, Lei Yang, Se Hyeuk Kim, Sebastian Schulz, Muyao Wu, Christopher Dalldorf, Emre Ozdemir, Rebecca M Lennen, Bernhard O Palsson, Adam M Feist | ACS Synthetic Biology | 2021-11-11 |
| Spectrum of Viral Pathogens Identified in Children with Clinical Myocarditis (Pre-COVID, 2000-2018): Etiologic Agent vs Innocent Bystander. | Othman A Aljohani, Duncan Mackie, Andras Bratincsak, John Bradley, James C Perry | The Journal Of Pediatrics | 2021-11-10 |
| Integrative Analysis of Metabolome and Microbiome in Patients with Progressive Alcohol-Associated Liver Disease. | Bei Gao, Yixin Zhu, Nan Gao, Weishou Shen, Peter Stärkel, Bernd Schnabl | Metabolites | 2021-11-10 |
| Identification of a therapeutic interfering particle-A single-dose SARS-CoV-2 antiviral intervention with a high barrier to resistance. | Sonali Chaturvedi, Gustavo Vasen, Michael Pablo, Xinyue Chen, Nathan Beutler, Arjun Kumar, Elizabeth Tanner, Sylvia Illouz, Donna Rahgoshay, John Burnett, Leo Holguin, Pei-Yi Chen, Blaise Ndjamen, Melanie Ott, Robert Rodick, Thomas Rogers, Davey M Smith, Leor S Weinberger | Cell | 2021-11-10 |
| Re-classification of strains and mining secondary metabolite biosynthetic gene clusters. | Namil Lee, Mira Choi, Woori Kim, Soonkyu Hwang, Yongjae Lee, Ji Hun Kim, Gahyeon Kim, Hyeseong Kim, Suhyung Cho, Sun Chang Kim, Bernhard Palsson, Kyoung-Soon Jang, Byung-Kwan Cho | IScience | 2021-11-09 |
| The Gut Microbiome Modifies the Association between a Mediterranean Diet and Diabetes in US Hispanic / Latino Population. | Dong D Wang, Qibin Qi, Zheng Wang, Mykhaylo Usyk, Daniela Sotres-Alvarez, Josiemer Mattei, Martha Tamez, Marc D Gellman, Martha Daviglus, Frank B Hu, Meir J Stampfer, Curtis Huttenhower, Rob Knight, Robert D Burk, Robert C Kaplan | The Journal Of Clinical Endocrinology And Metabolism | 2021-11-08 |
| Multi-Omics Study of Keystone Species in a Cystic Fibrosis Microbiome. | Cynthia B Silveira, Ana G Cobián-Güemes, Carla Uranga, Jonathon L Baker, Anna Edlund, Forest Rohwer, Douglas Conrad | International Journal Of Molecular Sciences | 2021-11-07 |
| Genome mining methods to discover bioactive natural products. | Katherine D Bauman, Keelie S Butler, Bradley S Moore, Jonathan R Chekan | Natural Product Reports | 2021-11-04 |
| Potent Anti-SARS-CoV-2 Activity by the Natural Product Gallinamide A and Analogues via Inhibition of Cathepsin L. | Anneliese S Ashhurst, Arthur H Tang, Pavla Fajtová, Michael C Yoon, Anupriya Aggarwal, Max J Bedding, Alexander Stoye, Laura Beretta, Dustin Pwee, Aleksandra Drelich, Danielle Skinner, Linfeng Li, Thomas D Meek, James H McKerrow, Vivian Hook, Chien-Te Tseng, Mark Larance, Stuart Turville, William H Gerwick, Anthony J O'Donoghue, Richard J Payne | Journal Of Medicinal Chemistry | 2021-11-03 |
| Role of the Gut Microbiota in Parenteral Nutrition-associated Liver Disease: From Current Knowledge to Future Opportunities. | Lu Jiang, Ying Wang, Yongtao Xiao, Yong Wang, Junkai Yan, Bernd Schnabl, Wei Cai | The Journal Of Nutrition | 2021-11-03 |
| Analysis of SARS-CoV-2 RNA Persistence across Indoor Surface Materials Reveals Best Practices for Environmental Monitoring Programs. | Rodolfo A Salido, Victor J Cantú, Alex E Clark, Sandra L Leibel, Anahid Foroughishafiei, Anushka Saha, Abbas Hakim, Alhakam Nouri, Alma L Lastrella, Anelizze Castro-Martínez, Ashley Plascencia, Bhavika K Kapadia, Bing Xia, Christopher A Ruiz, Clarisse A Marotz, Daniel Maunder, Elijah S Lawrence, Elizabeth W Smoot, Emily Eisner, Evelyn S Crescini, Laura Kohn, Lizbeth Franco Vargas, Marisol Chacón, Maryann Betty, Michal Machnicki, Min Yi Wu, Nathan A Baer, Pedro Belda-Ferre, Peter De Hoff, Phoebe Seaver, R Tyler Ostrander, Rebecca Tsai, Shashank Sathe, Stefan Aigner, Sydney C Morgan, Toan T Ngo, Tom Barber, Willi Cheung, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Rebecca Fielding-Miller, Rob Knight | MSystems | 2021-11-02 |
| Putting microbial interactions back into community contexts. | Emily C Pierce, Rachel J Dutton | Current Opinion In Microbiology | 2021-11-02 |
| Uremic serum damages endothelium by provoking excessive neutrophil extracellular trap formation. | Hoi Woul Lee, Victor Nizet, Jung Nam An, Hyung Seok Lee, Young Rim Song, Sung Gyun Kim, Jwa-Kyung Kim | Scientific Reports | 2021-11-02 |
| The interaction of enteric bacterial effectors with the host engulfment pathway control innate immune responses. | Ibrahim M Sayed, Stella-Rita Ibeawuchi, Dominique Lie, Mahitha Shree Anandachar, Rama Pranadinata, Manuela Raffatellu, Soumita Das | Gut Microbes | 2021-11-01 |
| Antibacterial Meroterpenoids, Merochlorins G-J from the Marine Bacterium sp. | Min-Ji Ryu, Prima F Hillman, Jihye Lee, Sunghoon Hwang, Eun-Young Lee, Sun-Shin Cha, Inho Yang, Dong-Chan Oh, Sang-Jip Nam, William Fenical | Marine Drugs | 2021-10-30 |
| Development of a Rapid and Sensitive CasRx-Based Diagnostic Assay for SARS-CoV-2. | Daniel J Brogan, Duverney Chaverra-Rodriguez, Calvin P Lin, Andrea L Smidler, Ting Yang, Lenissa M Alcantara, Igor Antoshechkin, Junru Liu, Robyn R Raban, Pedro Belda-Ferre, Rob Knight, Elizabeth A Komives, Omar S Akbari | ACS Sensors | 2021-10-29 |
| Fecal Microbiome Composition Does Not Predict Diet-Induced TMAO Production in Healthy Adults. | Marc Ferrell, Peter Bazeley, Zeneng Wang, Bruce S Levison, Xinmin S Li, Xun Jia, Ronald M Krauss, Rob Knight, Aldons J Lusis, J C Garcia-Garcia, Stanley L Hazen, W H Wilson Tang | Journal Of The American Heart Association | 2021-10-29 |
| Rapid, Affordable, and Uncomplicated Production of Bacterial Cell-free Lysate. | Robert M Cooper, Taishi Tonooka, Andriy Didovyk, Jeff Hasty | Journal Of Visualized Experiments : JoVE | 2021-10-29 |
| Facultative Parthenogenesis in California Condors. | Oliver A Ryder, Steven Thomas, Jessica Martin Judson, Michael N Romanov, Sugandha Dandekar, Jeanette C Papp, Lindsay C Sidak-Loftis, Kelli Walker, Ilse H Stalis, Michael Mace, Cynthia C Steiner, Leona G Chemnick | The Journal Of Heredity | 2021-10-28 |
| Asymptomatic detection of SARS-CoV-2 among cancer patients receiving infusional anti-cancer therapy. | Justin Shaya, Angelo Cabal, Taylor Nonato, Francesca Torriani, Joseph Califano, Scott Lippman, Assuntina Sacco, Rana R McKay | Cancer Medicine | 2021-10-28 |
| Biosynthesis and antifungal activity of fungus-induced O-methylated flavonoids in maize. | Christiane Förster, Vinzenz Handrick, Yezhang Ding, Yoko Nakamura, Christian Paetz, Bernd Schneider, Gabriel Castro-Falcón, Chambers C Hughes, Katrin Luck, Sowmya Poosapati, Grit Kunert, Alisa Huffaker, Jonathan Gershenzon, Eric A Schmelz, Tobias G Köllner | Plant Physiology | 2021-10-27 |
| Characterization of SARS-CoV-2 and common cold coronavirus-specific T-cell responses in MIS-C and Kawasaki disease children. | Li-En Hsieh, Alba Grifoni, John Sidney, Chisato Shimizu, Hiroko Shike, Nanda Ramchandar, Elizabeth Moreno, Adriana H Tremoulet, Jane C Burns, Alessandra Franco | European Journal Of Immunology | 2021-10-27 |
| Drugs and Bugs: The Gut-Brain Axis and Substance Use Disorders. | Sierra Simpson, Rio Mclellan, Emma Wellmeyer, Frederic Matalon, Olivier George | Journal Of Neuroimmune Pharmacology : The Official Journal Of The Society On NeuroImmune Pharmacology | 2021-10-25 |
| Editorial: Host-Pathogen Interactions During Pneumococcal Infection. | Masaya Yamaguchi, Yuki Kinjo, Victor Nizet | Frontiers In Cellular And Infection Microbiology | 2021-10-25 |
| Population Pharmacokinetic Modeling and Probability of Pharmacodynamic Target Attainment for Ceftazidime-Avibactam in Pediatric Patients Aged 3 Months and Older. | Richard C Franzese, Lynn McFadyen, Kenny J Watson, Todd Riccobene, Timothy J Carrothers, Manoli Vourvahis, Phylinda L S Chan, Susan Raber, John S Bradley, Mark Lovern | Clinical Pharmacology And Therapeutics | 2021-10-23 |
| Hepatocellular Carcinoma Risk Assessment for Patients With Advanced Fibrosis After Eradication of Hepatitis C Virus. | Nobuharu Tamaki, Masayuki Kurosaki, Yutaka Yasui, Nami Mori, Keiji Tsuji, Chitomi Hasebe, Kouji Joko, Takehiro Akahane, Koichiro Furuta, Haruhiko Kobashi, Hiroyuki Kimura, Hitoshi Yagisawa, Hiroyuki Marusawa, Masahiko Kondo, Yuji Kojima, Hideo Yoshida, Yasushi Uchida, Toshifumi Tada, Shinichiro Nakamura, Satoshi Yasuda, Hidenori Toyoda, Rohit Loomba, Namiki Izumi | Hepatology Communications | 2021-10-22 |
| Mucin-mimetic glycan arrays integrating machine learning for analyzing receptor pattern recognition by influenza A viruses. | Taryn M Lucas, Chitrak Gupta, Meghan O Altman, Emi Sanchez, Matthew R Naticchia, Pascal Gagneux, Abhishek Singharoy, Kamil Godula | Chem | 2021-10-22 |
| Specialized Metabolite Mediated Predation Defense in the Marine Actinobacterium Salinispora | Robert N Tuttle, Greg W Rouse, Gabriel Castro-Falcón, Chambers C Hughes, Paul R Jensen | Applied And Environmental Microbiology | 2021-10-20 |
| Antimicrobials from a feline commensal bacterium inhibit skin infection by drug-resistant S. pseudintermedius | Alan M O'Neill, Kate A Worthing, Nikhil Kulkarni, Fengwu Li, Teruaki Nakatsuji, Dominic McGrosso, Robert H Mills, Gayathri Kalla, Joyce Y Cheng, Jacqueline M Norris, Kit Pogliano, Joe Pogliano, David J Gonzalez, Richard L Gallo | ELife | 2021-10-19 |
| The S Protein of Group B Is a Critical Virulence Determinant That Impacts the Cell Surface Virulome. | Anaamika Campeau, Satoshi Uchiyama, Concepcion Sanchez, Consuelo Sauceda, Victor Nizet, David J Gonzalez | Frontiers In Microbiology | 2021-10-14 |
| Immune Response in Severe and Non-Severe Coronavirus Disease 2019 (COVID-19) Infection: A Mechanistic Landscape. | Kavitha Mukund, Priya Nayak, Chethan Ashokkumar, Sohail Rao, Jose Almeda, Monica M Betancourt-Garcia, Rakesh Sindhi, Shankar Subramaniam | Frontiers In Immunology | 2021-10-13 |
| Microbial diversity in tropical marine sediments assessed using culture-dependent and culture-independent techniques. | Alyssa M Demko, Nastassia V Patin, Paul R Jensen | Environmental Microbiology | 2021-10-11 |
| Traditional Farming Lifestyle in Old Older Mennonites Modulates Human Milk Composition. | Antti E Seppo, Rakin Choudhury, Catherine Pizzarello, Rohith Palli, Sade Fridy, Puja Sood Rajani, Jessica Stern, Camille Martina, Chloe Yonemitsu, Lars Bode, Kevin Bu, Sabrina Tamburini, Enrica Piras, David S Wallach, Maria Allen, R John Looney, Jose C Clemente, Juilee Thakar, Kirsi M Järvinen | Frontiers In Immunology | 2021-10-11 |
| Reconstitution of an intact clock reveals mechanisms of circadian timekeeping. | Archana G Chavan, Jeffrey A Swan, Joel Heisler, Cigdem Sancar, Dustin C Ernst, Mingxu Fang, Joseph G Palacios, Rebecca K Spangler, Clive R Bagshaw, Sarvind Tripathi, Priya Crosby, Susan S Golden, Carrie L Partch, Andy LiWang | Science (New York, N.Y.) | 2021-10-08 |
| SARS-CoV-2 infection generates tissue-localized immunological memory in humans. | Maya M L Poon, Ksenia Rybkina, Yu Kato, Masaru Kubota, Rei Matsumoto, Nathaniel I Bloom, Zeli Zhang, Kathryn M Hastie, Alba Grifoni, Daniela Weiskopf, Steven B Wells, Basak B Ural, Nora Lam, Peter A Szabo, Pranay Dogra, Yoon S Lee, Joshua I Gray, Marissa C Bradley, Maigan A Brusko, Todd M Brusko, Erica O Saphire, Thomas J Connors, Alessandro Sette, Shane Crotty, Donna L Farber | Science Immunology | 2021-10-07 |
| A posteriori dietary patterns better explain variations of the gut microbiome than individual markers in the American Gut Project. | Aurélie Cotillard, Agnès Cartier-Meheust, Nicole S Litwin, Soline Chaumont, Mathilde Saccareau, Franck Lejzerowicz, Julien Tap, Hana Koutnikova, Diana Gutierrez Lopez, Daniel McDonald, Se Jin Song, Rob Knight, Muriel Derrien, Patrick Veiga | The American Journal Of Clinical Nutrition | 2021-10-07 |
| Vitamin B-12 and the Gastrointestinal Microbiome: A Systematic Review. | Heather M Guetterman, Samantha L Huey, Rob Knight, Allison M Fox, Saurabh Mehta, Julia L Finkelstein | Advances In Nutrition (Bethesda, Md.) | 2021-10-06 |
| Uniform Manifold Approximation and Projection (UMAP) Reveals Composite Patterns and Resolves Visualization Artifacts in Microbiome Data. | George Armstrong, Cameron Martino, Gibraan Rahman, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Gal Mishne, Rob Knight | MSystems | 2021-10-05 |
| Spatial metabolomics identifies localized chemical changes in heart tissue during chronic cardiac Chagas Disease. | Danya A Dean, Gautham Gautham, Jair L Siqueira-Neto, James H McKerrow, Pieter C Dorrestein, Laura-Isobel McCall | PLoS Neglected Tropical Diseases | 2021-10-04 |
| Update on the Role of the Gut Microbiota on Alcohol-Associated Liver Disease. | Bernd Schnabl | Gastroenterology & Hepatology | 2021-10-04 |
| Unique virulence role of post-translocational chaperone PrsA in shaping secretome. | Zhao-Yi Wu, Anaamika Campeau, Chao-Hsien Liu, David J Gonzalez, Masaya Yamaguchi, Shigetada Kawabata, Chieh-Hsien Lu, Chian-Yu Lai, Hao-Chieh Chiu, Yung-Chi Chang | Virulence | 2021-10-01 |
| Iron-regulatory genes are associated with Neuroimaging measures in HIV infection. | Christine Fennema-Notestine, Tricia A Thornton-Wells, Todd Hulgan, Scott Letendre, Ronald J Ellis, Donald R Franklin, Albert M Anderson, Robert K Heaton, Cinnamon S Bloss, Igor Grant, Asha R Kallianpur, | Brain Imaging And Behavior | 2021-10-01 |
| Dietary Neu5Ac Intervention Protects Against Atherosclerosis Associated With Human-Like Neu5Gc Loss. | Kunio Kawanishi, Joanna K Coker, Kaare V Grunddal, Chirag Dhar, Jason Hsiao, Karsten Zengler, Nissi Varki, Ajit Varki, Philip L S M Gordts | Arteriosclerosis, Thrombosis, And Vascular Biology | 2021-09-30 |
| Bacterial Membrane-Derived Vesicles Attenuate Vancomycin Activity against Methicillin-Resistant . | Monika Kumaraswamy, Kamilla Wiull, Bishnu Joshi, George Sakoulas, Armin Kousha, Gustav Vaaje-Kolstad, Mona Johannessen, Kristin Hegstad, Victor Nizet, Fatemeh Askarian | Microorganisms | 2021-09-29 |
| Microbial Ecology and Evolution Are Essential for Understanding Pandemics. | Megan E Frederickson, Aspen T Reese | MBio | 2021-09-28 |
| Determinants of SARS-CoV-2 entry and replication in airway mucosal tissue and susceptibility in smokers. | Tsuguhisa Nakayama, Ivan T Lee, Sizun Jiang, Matthias S Matter, Carol H Yan, Jonathan B Overdevest, Chien-Ting Wu, Yury Goltsev, Liang-Chun Shih, Chun-Kang Liao, Bokai Zhu, Yunhao Bai, Peter Lidsky, Yinghong Xiao, David Zarabanda, Angela Yang, Meena Easwaran, Christian M Schürch, Pauline Chu, Han Chen, Anna K Stalder, David R McIlwain, Nicole A Borchard, Phil A Gall, Sachi S Dholakia, Wei Le, Le Xu, Chih-Jaan Tai, Te-Huei Yeh, Elizabeth Erickson-Direnzo, Jason M Duran, Kirsten D Mertz, Peter H Hwang, Jasmin D Haslbauer, Peter K Jackson, Thomas Menter, Raul Andino, Peter D Canoll, Adam S DeConde, Zara M Patel, Alexandar Tzankov, Garry P Nolan, Jayakar V Nayak | Cell Reports. Medicine | 2021-09-28 |
| Detection and quantification of Mycobacterium tuberculosis antigen CFP10 in serum and urine for the rapid diagnosis of active tuberculosis disease. | Marva Seifert, Eva Vargas, Victor Ruiz-Valdepeñas Montiel, Joseph Wang, Timothy C Rodwell, Antonino Catanzaro | Scientific Reports | 2021-09-28 |
| Discovery and Mechanism of SARS-CoV-2 Main Protease Inhibitors. | Sarah Huff, Indrasena Reddy Kummetha, Shashi Kant Tiwari, Matthew B Huante, Alex E Clark, Shaobo Wang, William Bray, Davey Smith, Aaron F Carlin, Mark Endsley, Tariq M Rana | Journal Of Medicinal Chemistry | 2021-09-27 |
| SARS-CoV-2 Variants of Concern. | Jun Yong Choi, Davey M Smith | Yonsei Medical Journal | 2021-09-27 |
| RiboRid: A low cost, advanced, and ultra-efficient method to remove ribosomal RNA for bacterial transcriptomics. | Donghui Choe, Richard Szubin, Saugat Poudel, Anand Sastry, Yoseb Song, Yongjae Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | PLoS Genetics | 2021-09-27 |
| Gut epithelial IL-27 confers intestinal immunity through the induction of intraepithelial lymphocytes. | Chia-Hao Lin, Mei-Chi Chen, Ling-Li Lin, David A Christian, Booki Min, Christopher A Hunter, Li-Fan Lu | The Journal Of Experimental Medicine | 2021-09-23 |
| Restriction factor compendium for influenza A virus reveals a mechanism for evasion of autophagy. | Laura Martin-Sancho, Shashank Tripathi, Ariel Rodriguez-Frandsen, Lars Pache, Maite Sanchez-Aparicio, Michael J McGregor, Kelsey M Haas, Danielle L Swaney, Thong T Nguyen, João I Mamede, Christopher Churas, Dexter Pratt, Sara B Rosenthal, Laura Riva, Courtney Nguyen, Nish Beltran-Raygoza, Stephen Soonthornvacharin, Guojun Wang, David Jimenez-Morales, Paul D De Jesus, Hong M Moulton, David A Stein, Max W Chang, Chris Benner, Trey Ideker, Randy A Albrecht, Judd F Hultquist, Nevan J Krogan, Adolfo García-Sastre, Sumit K Chanda | Nature Microbiology | 2021-09-23 |
| Mass spectrometry-based metabolomics in microbiome investigations. | Anelize Bauermeister, Helena Mannochio-Russo, Letícia V Costa-Lotufo, Alan K Jarmusch, Pieter C Dorrestein | Nature Reviews. Microbiology | 2021-09-22 |
| Challenges in Determining the Role of Microbiome Evolution in Barrett's Esophagus and Progression to Esophageal Adenocarcinoma. | Caitlin Guccione, Rena Yadlapati, Shailja Shah, Rob Knight, Kit Curtius | Microorganisms | 2021-09-22 |
| Markers of Gut Barrier Function and Microbial Translocation Associate with Lower Gut Microbial Diversity in People with HIV. | Ronald J Ellis, Jennifer E Iudicello, Robert K Heaton, Stéphane Isnard, John Lin, Jean-Pierre Routy, Sara Gianella, Martin Hoenigl, Rob Knight | Viruses | 2021-09-22 |
| Detection of sulfate-reducing bacteria as an indicator for successful mitigation of sulfide production. | Avishek Dutta, Fernando Valle, Thomas Goldman, Jeff Keating, Ellen Burke, Nicole Williamson, Reinhard Dirmeier, Jeff S Bowman | Applied And Environmental Microbiology | 2021-09-22 |
| Extrachromosomal DNA in HPV-Mediated Oropharyngeal Cancer Drives Diverse Oncogene Transcription. | John Pang, Nam Nguyen, Jens Luebeck, Laurel Ball, Andrey Finegersh, Shuling Ren, Takuya Nakagawa, Mitchell Flagg, Sayed Sadat, Paul S Mischel, Guorong Xu, Kathleen Fisch, Theresa Guo, Gabrielle Cahill, Bharat Panuganti, Vineet Bafna, Joseph Califano | Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research | 2021-09-21 |
| Endothelial Heparan Sulfate Mediates Hepatic Neutrophil Trafficking and Injury during Staphylococcus aureus Sepsis. | Gregory J Golden, Alejandro Gómez Toledo, Alex Marki, James T Sorrentino, Claire Morris, Raquel J Riley, Charlotte Spliid, Qiongyu Chen, Ingrid Cornax, Nathan E Lewis, Nissi Varki, Dzung Le, Johan Malmström, Christofer Karlsson, Klaus Ley, Victor Nizet, Jeffrey D Esko | MBio | 2021-09-21 |
| Continental-Scale Paddy Soil Bacterial Community Structure, Function, and Biotic Interaction. | Hong-Yi Li, Hang Wang, Xin-Hua Tao, Xian-Zhe Wang, Wei-Zheng Jin, Jack A Gilbert, Yong-Guan Zhu, Zhi-Jian Zhang | MSystems | 2021-09-21 |
| Cell-intrinsic and -extrinsic roles of miRNAs in regulating T cell immunity. | Sunglim Cho, Jiayi Dong, Li-Fan Lu | Immunological Reviews | 2021-09-21 |
| Immunobiology of the Classical Lancefield Group A Streptococcal Carbohydrate Antigen. | Nina J Gao, Ervin Rodas Lima, Victor Nizet | Infection And Immunity | 2021-09-20 |
| Streptolysins are the primary inflammasome activators in macrophages during Streptococcus pyogenes infection. | Johanna Richter, Mercedes M Monteleone, Amanda J Cork, Timothy C Barnett, Victor Nizet, Stephan Brouwer, Kate Schroder, Mark J Walker | Immunology And Cell Biology | 2021-09-18 |
| Genetic dissection of complex traits using hierarchical biological knowledge. | Hidenori Tanaka, Jason F Kreisberg, Trey Ideker | PLoS Computational Biology | 2021-09-17 |
| Chemical Proportionality within Molecular Networks. | Daniel Petras, Andrés Mauricio Caraballo-Rodríguez, Alan K Jarmusch, Carlos Molina-Santiago, Julia M Gauglitz, Emily C Gentry, Pedro Belda-Ferre, Diego Romero, Shirley M Tsunoda, Pieter C Dorrestein, Mingxun Wang | Analytical Chemistry | 2021-09-17 |
| Tender and swollen joint counts are poorly associated with disability in chikungunya arthritis compared to rheumatoid arthritis. | Hugh Watson, Ramão Luciano Nogueira-Hayd, Maony Rodrigues-Moreno, Felipe Naveca, Giulia Calusi, Karol Suchowiecki, Gary S Firestein, Gary Simon, Aileen Y Chang | Scientific Reports | 2021-09-17 |
| Mechanisms for control of skin immune function by the microbiome. | Teruaki Nakatsuji, Joyce Y Cheng, Richard L Gallo | Current Opinion In Immunology | 2021-09-16 |
| Gut Metabolites Are More Predictive of Disease and Cohoused States than Gut Bacterial Features in a Polycystic Ovary Syndrome-Like Mouse Model. | Bryan Ho, Daniel Ryback, Basilin Benson, Cayla N Mason, Pedro J Torres, Robert A Quinn, Varykina G Thackray, Scott T Kelley | MSystems | 2021-09-14 |
| Promises of microbiome-based therapies. | Jasmohan S Bajaj, Siew C Ng, Bernd Schnabl | Journal Of Hepatology | 2021-09-13 |
| Reduced gut microbiome diversity in people with HIV who have distal neuropathic pain. | Ronald J Ellis, Robert K Heaton, Sara Gianella, Gibraan Rahman, Rob Knight | The Journal Of Pain | 2021-09-13 |
| Oligosaccharides and Microbiota in Human Milk Are Interrelated at 3 Months Postpartum in a Cohort of Women with a High Prevalence of Gestational Impaired Glucose Tolerance. | Lauren LeMay-Nedjelski, Chloe Yonemitsu, Michelle R Asbury, James Butcher, Sylvia H Ley, Anthony J Hanley, Alex Kiss, Sharon Unger, Julia K Copeland, Pauline W Wang, Alain Stintzi, Lars Bode, Deborah L O'Connor | The Journal Of Nutrition | 2021-09-11 |
| SARS-CoV-2 indoor air transmission is a threat that can be addressed with science. | Jonathan M Samet, Thomas A Burke, Seema S Lakdawala, John J Lowe, Linsey C Marr, Kimberly A Prather, Marilee Shelton-Davenport, John Volckens | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-09-09 |
| Dissecting the Shared Genetic Architecture of Suicide Attempt, Psychiatric Disorders, and Known Risk Factors. | Niamh Mullins, JooEun Kang, Adrian I Campos, Jonathan R I Coleman, Alexis C Edwards, Hanga Galfalvy, Daniel F Levey, Adriana Lori, Andrey Shabalin, Anna Starnawska, Mei-Hsin Su, Hunna J Watson, Mark Adams, Swapnil Awasthi, Michael Gandal, Jonathan D Hafferty, Akitoyo Hishimoto, Minsoo Kim, Satoshi Okazaki, Ikuo Otsuka, Stephan Ripke, Erin B Ware, Andrew W Bergen, Wade H Berrettini, Martin Bohus, Harry Brandt, Xiao Chang, Wei J Chen, Hsi-Chung Chen, Steven Crawford, Scott Crow, Emily DiBlasi, Philibert Duriez, Fernando Fernández-Aranda, Manfred M Fichter, Steven Gallinger, Stephen J Glatt, Philip Gorwood, Yiran Guo, Hakon Hakonarson, Katherine A Halmi, Hai-Gwo Hwu, Sonia Jain, Stéphane Jamain, Susana Jiménez-Murcia, Craig Johnson, Allan S Kaplan, Walter H Kaye, Pamela K Keel, James L Kennedy, Kelly L Klump, Dong Li, Shih-Cheng Liao, Klaus Lieb, Lisa Lilenfeld, Chih-Min Liu, Pierre J Magistretti, Christian R Marshall, James E Mitchell, Eric T Monson, Richard M Myers, Dalila Pinto, Abigail Powers, Nicolas Ramoz, Stefan Roepke, Vsevolod Rozanov, Stephen W Scherer, Christian Schmahl, Marcus Sokolowski, Michael Strober, Laura M Thornton, Janet Treasure, Ming T Tsuang, Stephanie H Witt, D Blake Woodside, Zeynep Yilmaz, Lea Zillich, Rolf Adolfsson, Ingrid Agartz, Tracy M Air, Martin Alda, Lars Alfredsson, Ole A Andreassen, Adebayo Anjorin, Vivek Appadurai, María Soler Artigas, Sandra Van der Auwera, M Helena Azevedo, Nicholas Bass, Claiton H D Bau, Bernhard T Baune, Frank Bellivier, Klaus Berger, Joanna M Biernacka, Tim B Bigdeli, Elisabeth B Binder, Michael Boehnke, Marco P Boks, Rosa Bosch, David L Braff, Richard Bryant, Monika Budde, Enda M Byrne, Wiepke Cahn, Miguel Casas, Enrique Castelao, Jorge A Cervilla, Boris Chaumette, Sven Cichon, Aiden Corvin, Nicholas Craddock, David Craig, Franziska Degenhardt, Srdjan Djurovic, Howard J Edenberg, Ayman H Fanous, Jerome C Foo, Andreas J Forstner, Mark Frye, Janice M Fullerton, Justine M Gatt, Pablo V Gejman, Ina Giegling, Hans J Grabe, Melissa J Green, Eugenio H Grevet, Maria Grigoroiu-Serbanescu, Blanca Gutierrez, Jose Guzman-Parra, Steven P Hamilton, Marian L Hamshere, Annette Hartmann, Joanna Hauser, Stefanie Heilmann-Heimbach, Per Hoffmann, Marcus Ising, Ian Jones, Lisa A Jones, Lina Jonsson, René S Kahn, John R Kelsoe, Kenneth S Kendler, Stefan Kloiber, Karestan C Koenen, Manolis Kogevinas, Bettina Konte, Marie-Odile Krebs, Mikael Landén, Jacob Lawrence, Marion Leboyer, Phil H Lee, Douglas F Levinson, Calwing Liao, Jolanta Lissowska, Susanne Lucae, Fermin Mayoral, Susan L McElroy, Patrick McGrath, Peter McGuffin, Andrew McQuillin, Sarah E Medland, Divya Mehta, Ingrid Melle, Yuri Milaneschi, Philip B Mitchell, Esther Molina, Gunnar Morken, Preben Bo Mortensen, Bertram Müller-Myhsok, Caroline Nievergelt, Vishwajit Nimgaonkar, Markus M Nöthen, Michael C O'Donovan, Roel A Ophoff, Michael J Owen, Carlos Pato, Michele T Pato, Brenda W J H Penninx, Jonathan Pimm, Giorgio Pistis, James B Potash, Robert A Power, Martin Preisig, Digby Quested, Josep Antoni Ramos-Quiroga, Andreas Reif, Marta Ribasés, Vanesa Richarte, Marcella Rietschel, Margarita Rivera, Andrea Roberts, Gloria Roberts, Guy A Rouleau, Diego L Rovaris, Dan Rujescu, Cristina Sánchez-Mora, Alan R Sanders, Peter R Schofield, Thomas G Schulze, Laura J Scott, Alessandro Serretti, Jianxin Shi, Stanley I Shyn, Lea Sirignano, Pamela Sklar, Olav B Smeland, Jordan W Smoller, Edmund J S Sonuga-Barke, Gianfranco Spalletta, John S Strauss, Beata Świątkowska, Maciej Trzaskowski, Gustavo Turecki, Laura Vilar-Ribó, John B Vincent, Henry Völzke, James T R Walters, Cynthia Shannon Weickert, Thomas W Weickert, Myrna M Weissman, Leanne M Williams, Naomi R Wray, Clement C Zai, Allison E Ashley-Koch, Jean C Beckham, Elizabeth R Hauser, Michael A Hauser, Nathan A Kimbrel, Jennifer H Lindquist, Benjamin McMahon, David W Oslin, Xuejun Qin, , , , , , , Esben Agerbo, Anders D Børglum, Gerome Breen, Annette Erlangsen, Tõnu Esko, Joel Gelernter, David M Hougaard, Ronald C Kessler, Henry R Kranzler, Qingqin S Li, Nicholas G Martin, Andrew M McIntosh, Ole Mors, Merete Nordentoft, Catherine M Olsen, David Porteous, Robert J Ursano, Danuta Wasserman, Thomas Werge, David C Whiteman, Cynthia M Bulik, Hilary Coon, Ditte Demontis, Anna R Docherty, Po-Hsiu Kuo, Cathryn M Lewis, J John Mann, Miguel E Rentería, Daniel J Smith, Eli A Stahl, Murray B Stein, Fabian Streit, Virginia Willour, Douglas M Ruderfer | Biological Psychiatry | 2021-09-09 |
| Bacterial Cytological Profiling Identifies Rhodanine-Containing PAINS Analogs as Specific Inhibitors of Thymidylate Kinase . | Elizabeth T Montaño, Jason F Nideffer, Joseph Sugie, Eray Enustun, Adam B Shapiro, Hannah Tsunemoto, Alan I Derman, Kit Pogliano, Joe Pogliano | Journal Of Bacteriology | 2021-09-08 |
| Gut microbiota alterations in response to sleep length among African-origin adults. | Na Fei, Candice Choo-Kang, Sirimon Reutrakul, Stephanie J Crowley, Dale Rae, Kweku Bedu-Addo, Jacob Plange-Rhule, Terrence E Forrester, Estelle V Lambert, Pascal Bovet, Walter Riesen, Wolfgang Korte, Amy Luke, Brian T Layden, Jack A Gilbert, Lara R Dugas | PloS One | 2021-09-08 |
| Trivalent Subunit Vaccine Candidates for COVID-19 and Their Delivery Devices. | Oscar A Ortega-Rivera, Matthew D Shin, Angela Chen, Veronique Beiss, Miguel A Moreno-Gonzalez, Miguel A Lopez-Ramirez, Maria Reynoso, Hong Wang, Brett L Hurst, Joseph Wang, Jonathan K Pokorski, Nicole F Steinmetz | Journal Of The American Chemical Society | 2021-09-07 |
| Vaccine genetics of IGHV1-2 VRC01-class broadly neutralizing antibody precursor naïve human B cells. | Jeong Hyun Lee, Laura Toy, Justin T Kos, Yana Safonova, William R Schief, Colin Havenar-Daughton, Corey T Watson, Shane Crotty | NPJ Vaccines | 2021-09-06 |
| Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes. | George W Armstrong, Kalen Cantrell, Shi Huang, Daniel McDonald, Niina Haiminen, Anna Paola Carrieri, Qiyun Zhu, Antonio Gonzalez, Imran McGrath, Kristen Beck, Daniel Hakim, Aki S Havulinna, Guillaume Méric, Teemu Niiranen, Leo Lahti, Veikko Salomaa, Mohit Jain, Michael Inouye, Austin D Swafford, Ho-Cheol Kim, Laxmi Parida, Yoshiki Vázquez-Baeza, Rob Knight | Genome Research | 2021-09-03 |
| Resurgence of SARS-CoV-2 Infection in a Highly Vaccinated Health System Workforce. | Jocelyn Keehner, Lucy E Horton, Nancy J Binkin, Louise C Laurent, David Pride, Christopher A Longhurst, Shira R Abeles, Francesca J Torriani | The New England Journal Of Medicine | 2021-09-01 |
| Making Sense of a Scent-Sensing Metaphor for Microbes and Environmental Predictions. | Jeff S Bowman | MSystems | 2021-08-31 |
| Diet and feeding pattern modulate diurnal dynamics of the ileal microbiome and transcriptome. | Ana Carolina Dantas Machado, Steven D Brown, Amulya Lingaraju, Vignesh Sivaganesh, Cameron Martino, Amandine Chaix, Peng Zhao, Antonio F M Pinto, Max W Chang, R Alexander Richter, Alan Saghatelian, Alan R Saltiel, Rob Knight, Satchidananda Panda, Amir Zarrinpar | Cell Reports | 2021-08-30 |
| Structure-Based Optimization of Quinazolines as Cruzain and CATL Inhibitors. | Elany Barbosa da Silva, Débora A Rocha, Isadora S Fortes, Wenqian Yang, Ludovica Monti, Jair L Siqueira-Neto, Conor R Caffrey, James McKerrow, Saulo F Andrade, Rafaela S Ferreira | Journal Of Medicinal Chemistry | 2021-08-30 |
| Immunohistochemical and qPCR Detection of SARS-CoV-2 in the Human Middle Ear Versus the Nasal Cavity: Case Series. | Arwa Kurabi, Kwang Pak, Adam S DeConde, Allen F Ryan, Carol H Yan | Head And Neck Pathology | 2021-08-28 |
| Airborne transmission of respiratory viruses. | Chia C Wang, Kimberly A Prather, Josué Sznitman, Jose L Jimenez, Seema S Lakdawala, Zeynep Tufekci, Linsey C Marr | Science (New York, N.Y.) | 2021-08-27 |
| Decentralized vitamin C & D dual biosensor chip: Toward personalized immune system support. | Víctor Ruiz-Valdepeñas Montiel, Juliane R Sempionatto, Eva Vargas, Eileen Bailey, Jennifer May, Andrea Bulbarello, André Düsterloh, Nathan Matusheski, Joseph Wang | Biosensors & Bioelectronics | 2021-08-26 |
| Continuous measurements of volatile gases as detection of algae crop health. | Jon S Sauer, Ryan Simkovsky, Alexia N Moore, Luis Camarda, Summer L Sherman, Kimberly A Prather, Robert S Pomeroy | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-08-25 |
| Antibody responses induced by SHIV infection are more focused than those induced by soluble native HIV-1 envelope trimers in non-human primates. | Jelle van Schooten, Marlies M van Haaren, Hui Li, Laura E McCoy, Colin Havenar-Daughton, Christopher A Cottrell, Judith A Burger, Patricia van der Woude, Leanne C Helgers, Ilhan Tomris, Celia C Labranche, David C Montefiori, Andrew B Ward, Dennis R Burton, John P Moore, Rogier W Sanders, Shane Crotty, George M Shaw, Marit J van Gils | PLoS Pathogens | 2021-08-25 |
| Machine Learning of Bacterial Transcriptomes Reveals Responses Underlying Differential Antibiotic Susceptibility. | Anand V Sastry, Nicholas Dillon, Amitesh Anand, Saugat Poudel, Ying Hefner, Sibei Xu, Richard Szubin, Adam M Feist, Victor Nizet, Bernhard Palsson | MSphere | 2021-08-25 |
| Relating sinking and suspended microbial communities in the California Current Ecosystem: Digestion resistance and the contributions of phytoplankton taxa to export. | Bellineth Valencia, Michael R Stukel, Andrew E Allen, John P McCrow, Ariel Rabines, Brian Palenik, Michael R Landry | Environmental Microbiology | 2021-08-25 |
| Molecular Mirror Technology Facilitates High-Throughput, Accurate SARS-CoV-2 Testing. | Susan Realegeno, Sara Hash, Charlene Wong, Roland Liu, Jovan Shepherd, Robert T Schooley, David A Lipson, Frederick Fung, Suresh Menon, David T Pride | Microbiology Spectrum | 2021-08-25 |
| Antibody secreting cells are critically dependent on integrin α4β7/MAdCAM-1 for intestinal recruitment and control of the microbiota during chronic colitis. | Christopher J Tyler, Mauricio Guzman, Luke R Lundborg, Shaila Yeasmin, Nadia Zgajnar, Paul Jedlicka, Giorgos Bamias, Jesús Rivera-Nieves | Mucosal Immunology | 2021-08-25 |
| Aryl hydrocarbon receptor deficiency in intestinal epithelial cells aggravates alcohol-related liver disease. | Minyi Qian, Jun Liu, Danyang Zhao, Pengpeng Cai, Chuyue Pan, Wenxin Jia, Yingsheng Gao, Yufei Zhang, Nan Zhang, Yinan Zhang, Quan Zhang, Dalei Wu, Chengjie Shan, Meiling Zhang, Bernd Schnabl, Song Yang, Xu Shen, Lirui Wang | Cellular And Molecular Gastroenterology And Hepatology | 2021-08-25 |
| Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo. | Ye Gao, Hyun Gyu Lim, Hans Verkler, Richard Szubin, Daniel Quach, Irina Rodionova, Ke Chen, James T Yurkovich, Byung-Kwan Cho, Bernhard O Palsson | Nucleic Acids Research | 2021-08-24 |
| Early life gut microbiota is associated with rapid infant growth in Hispanics from Southern California. | Tanya L Alderete, Roshonda B Jones, Justin P Shaffer, Elizabeth A Holzhausen, William B Patterson, Elham Kazemian, Lida Chatzi, Rob Knight, Jasmine F Plows, Paige K Berger, Michael I Goran | Gut Microbes | 2021-08-23 |
| Intestinal virome and therapeutic potential of bacteriophages in liver disease. | Cynthia Hsu, Yi Duan, Derrick E Fouts, Bernd Schnabl | Journal Of Hepatology | 2021-08-23 |
| SARS-CoV-2 escape from a highly neutralizing COVID-19 convalescent plasma. | Emanuele Andreano, Giulia Piccini, Danilo Licastro, Lorenzo Casalino, Nicole V Johnson, Ida Paciello, Simeone Dal Monego, Elisa Pantano, Noemi Manganaro, Alessandro Manenti, Rachele Manna, Elisa Casa, Inesa Hyseni, Linda Benincasa, Emanuele Montomoli, Rommie E Amaro, Jason S McLellan, Rino Rappuoli | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-08-21 |
| An integrin αEβ7-dependent mechanism of IgA transcytosis requires direct plasma cell contact with intestinal epithelium. | Mauricio Guzman, Luke R Lundborg, Shaila Yeasmin, Christopher J Tyler, Nadia R Zgajnar, Vanessa Taupin, Katarzyna Dobaczewska, Zbigniew Mikulski, Giorgos Bamias, Jesús Rivera-Nieves | Mucosal Immunology | 2021-08-20 |
| Glycocalyx crowding with mucin mimetics strengthens binding of soluble and virus-associated lectins to host cell glycan receptors. | Daniel J Honigfort, Meghan O Altman, Pascal Gagneux, Kamil Godula | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-08-19 |
| Identification of a transcription factor, PunR, that regulates the purine and purine nucleoside transporter punC in E. coli. | Irina A Rodionova, Ye Gao, Anand Sastry, Ying Hefner, Hyun Gyu Lim, Dmitry A Rodionov, Milton H Saier, Bernhard O Palsson | Communications Biology | 2021-08-19 |
| Host DNA Depletion in Saliva Samples for Improved Shotgun Metagenomics. | Clarisse Marotz, Cristal Zuniga, Livia Zaramela, Rob Knight, Karsten Zengler | Methods In Molecular Biology (Clifton, N.J.) | 2021-08-19 |
| A novel class of TMPRSS2 inhibitors potently block SARS-CoV-2 and MERS-CoV viral entry and protect human epithelial lung cells. | Matthew Mahoney, Vishnu C Damalanka, Michael A Tartell, Dong Hee Chung, André Luiz Lourenço, Dustin Pwee, Anne E Mayer Bridwell, Markus Hoffmann, Jorine Voss, Partha Karmakar, Nurit P Azouz, Andrea M Klingler, Paul W Rothlauf, Cassandra E Thompson, Melody Lee, Lidija Klampfer, Christina L Stallings, Marc E Rothenberg, Stefan Pöhlmann, Sean P J Whelan, Anthony J O'Donoghue, Charles S Craik, James W Janetka | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-08-18 |
| Acremonamide, a Cyclic Pentadepsipeptide with Wound-Healing Properties Isolated from a Marine-Derived Fungus of the Genus . | Sojeong Kim, Chang Wook Lee, So-Yeon Park, Ratnakar N Asolkar, Haerin Kim, Geum Jin Kim, Song Jin Oh, Youngbae Kim, Eun-Young Lee, Dong-Chan Oh, Inho Yang, Man Jeong Paik, Hyukjae Choi, Hangun Kim, Sang-Jip Nam, William Fenical | Journal Of Natural Products | 2021-08-13 |
| Decreased Antibody Responses to Ad26.COV2.S Relative to SARS-CoV-2 mRNA Vaccines in Patients With Inflammatory Bowel Disease. | Valeriya Pozdnyakova, Gregory J Botwin, Kimia Sobhani, John Prostko, Jonathan Braun, Dermot P B Mcgovern, Gil Y Melmed, Keren Appel, Andrea Banty, Edward Feldman, Christina Ha, Rashmi Kumar, Susie Lee, Shervin Rabizadeh, Theodore Stein, Gaurav Syal, Stephan Targan, Eric Vasiliauskas, David Ziring, Philip Debbas, Melissa Hampton, Emebet Mengesha, James L Stewart, Edwin C Frias, Susan Cheng, Joseph Ebinger, Jane C Figueiredo, Brigid Boland, Aline Charabaty, Michael Chiorean, Erica Cohen, Ann Flynn, John Valentine, David Fudman, Arash Horizon, Jason Hou, Caroline Hwang, Mark Lazarev, Donald Lum, Rebecca Fausel, Swapna Reddy, Mark Mattar, Mark Metwally, Arthur Ostrov, Nimisha Parekh, Laura Raffals, Sarah Sheibani, Corey Siegel, Douglas Wolf, Ziad Younes | Gastroenterology | 2021-08-12 |
| Microbiota and Fatty Liver Disease-the Known, the Unknown, and the Future. | Sonja Lang, Bernd Schnabl | Cell Host & Microbe | 2021-08-12 |
| Risk factors for COVID-19 mortality in hospitalised children and adolescents in Brazil - Authors' reply. | Eduardo A Oliveira, Enrico A Colosimo, Ana Cristina Simões E Silva, Robert H Mak, Daniella B Martelli, Ludmila R Silva, Hercílio Martelli-Júnior, Maria Christina L Oliveira | The Lancet. Child & Adolescent Health | 2021-08-10 |
| Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus. | Smruthi Karthikeyan, Andrew Nguyen, Daniel McDonald, Yijian Zong, Nancy Ronquillo, Junting Ren, Jingjing Zou, Sawyer Farmer, Greg Humphrey, Diana Henderson, Tara Javidi, Karen Messer, Cheryl Anderson, Robert Schooley, Natasha K Martin, Rob Knight | MSystems | 2021-08-10 |
| Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. | Aleksandar Antanasijevic, Leigh M Sewall, Christopher A Cottrell, Diane G Carnathan, Luis E Jimenez, Julia T Ngo, Jennifer B Silverman, Bettina Groschel, Erik Georgeson, Jinal Bhiman, Raiza Bastidas, Celia LaBranche, Joel D Allen, Jeffrey Copps, Hailee R Perrett, Kimmo Rantalainen, Fabien Cannac, Yuhe R Yang, Alba Torrents de la Peña, Rebeca Froes Rocha, Zachary T Berndsen, David Baker, Neil P King, Rogier W Sanders, John P Moore, Shane Crotty, Max Crispin, David C Montefiori, Dennis R Burton, William R Schief, Guido Silvestri, Andrew B Ward | Nature Communications | 2021-08-10 |
| Clinical Practice Guideline by the Pediatric Infectious Diseases Society and the Infectious Diseases Society of America: 2021 Guideline on Diagnosis and Management of Acute Hematogenous Osteomyelitis in Pediatrics. | Charles R Woods, John S Bradley, Archana Chatterjee, Lawson A Copley, Joan Robinson, Matthew P Kronman, Antonio Arrieta, Sandra L Fowler, Christopher Harrison, Maria A Carrillo-Marquez, Sandra R Arnold, Stephen C Eppes, Laura P Stadler, Coburn H Allen, Lynnette J Mazur, C Buddy Creech, Samir S Shah, Theoklis Zaoutis, David S Feldman, Valéry Lavergne | Journal Of The Pediatric Infectious Diseases Society | 2021-08-05 |
| Chemical Gradients of Plant Substrates in an Fungus Garden. | Andrés Mauricio Caraballo-Rodríguez, Sara P Puckett, Kathleen E Kyle, Daniel Petras, Ricardo da Silva, Louis-Félix Nothias, Madeleine Ernst, Justin J J van der Hooft, Anupriya Tripathi, Mingxun Wang, Marcy J Balunas, Jonathan L Klassen, Pieter C Dorrestein | MSystems | 2021-08-03 |
| Variation in Microbial Exposure at the Human-Animal Interface and the Implications for Microbiome-Mediated Health Outcome. | Sahana Kuthyar, Aspen T Reese | MSystems | 2021-08-03 |
| Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom. | Aaron Oliver, Sheila Podell, Agnieszka Pinowska, Jesse C Traller, Sarah R Smith, Ryan McClure, Alex Beliaev, Pavlo Bohutskyi, Eric A Hill, Ariel Rabines, Hong Zheng, Lisa Zeigler Allen, Alan Kuo, Igor V Grigoriev, Andrew E Allen, David Hazlebeck, Eric E Allen | Scientific Reports | 2021-08-02 |
| Sleep Disturbances are a Significant Predictor of Chikungunya Arthritis Flare Severity. | Sarah R Tritsch, Richard Amdur, Liliana Encinales, Andres Cadena, Paige Fierbaugh, Geraldine Avendaño, Carlos Andres Herrera Gomez, Karol Suchowiecki, Evelyn Mendoza-Torres, Wendy Rosales, Dennys Jimenez, Carlos Alberto Perez Hernandez, Alfonso Sucerquia Hernandez, Paula Bruges Silvera, Yerlenis Galvis Crespo, Alberto David Cabana Jimenez, Jennifer Carolina Martinez Zapata, Christopher N Mores, Gary S Firestein, Gary Simon, Aileen Y Chang | Journal Of Cellular Immunology | 2021-07-29 |
| Comparative genomic analysis of obligately piezophilic DB21MT-5 reveals bacterial adaptation to the Challenger Deep, Mariana Trench. | Wei-Jia Zhang, Chan Zhang, Siyu Zhou, Xue-Gong Li, Sophie Mangenot, Stéphanie Fouteau, Thomas Guerin, Xiao-Qing Qi, Jian Yang, Douglas H Bartlett, Long-Fei Wu | Microbial Genomics | 2021-07-28 |
| Oxitec and MosquitoMate in the United States: lessons for the future of gene drive mosquito control. | Cynthia E Schairer, James Najera, Anthony A James, Omar S Akbari, Cinnamon S Bloss | Pathogens And Global Health | 2021-07-27 |
| Dietary selection pressures and their impact on the gut microbiome. | Gertrude Ecklu-Mensah, Jack Gilbert, Suzanne Devkota | Cellular And Molecular Gastroenterology And Hepatology | 2021-07-27 |
| Emergence of an early SARS-CoV-2 epidemic in the United States. | Mark Zeller, Karthik Gangavarapu, Catelyn Anderson, Allison R Smither, John A Vanchiere, Rebecca Rose, Daniel J Snyder, Gytis Dudas, Alexander Watts, Nathaniel L Matteson, Refugio Robles-Sikisaka, Maximilian Marshall, Amy K Feehan, Gilberto Sabino-Santos, Antoinette R Bell-Kareem, Laura D Hughes, Manar Alkuzweny, Patricia Snarski, Julia Garcia-Diaz, Rona S Scott, Lilia I Melnik, Raphaëlle Klitting, Michelle McGraw, Pedro Belda-Ferre, Peter DeHoff, Shashank Sathe, Clarisse Marotz, Nathan D Grubaugh, David J Nolan, Arnaud C Drouin, Kaylynn J Genemaras, Karissa Chao, Sarah Topol, Emily Spencer, Laura Nicholson, Stefan Aigner, Gene W Yeo, Lauge Farnaes, Charlotte A Hobbs, Louise C Laurent, Rob Knight, Emma B Hodcroft, Kamran Khan, Dahlene N Fusco, Vaughn S Cooper, Phillipe Lemey, Lauren Gardner, Susanna L Lamers, Jeremy P Kamil, Robert F Garry, Marc A Suchard, Kristian G Andersen | Cell | 2021-07-27 |
| ACE2 Receptor-Modified Algae-Based Microrobot for Removal of SARS-CoV-2 in Wastewater. | Fangyu Zhang, Zhengxing Li, Lu Yin, Qiangzhe Zhang, Nelly Askarinam, Rodolfo Mundaca-Uribe, Farshad Tehrani, Emil Karshalev, Weiwei Gao, Liangfang Zhang, Joseph Wang | Journal Of The American Chemical Society | 2021-07-22 |
| Forming Consensus To Advance Urobiome Research. | Linda Brubaker, Jean-Philippe F Gourdine, Nazema Y Siddiqui, Amanda Holland, Thomas Halverson, Roberto Limeria, David Pride, Lenore Ackerman, Catherine S Forster, Kristin M Jacobs, Krystal J Thomas-White, Catherine Putonti, Qunfeng Dong, Michael Weinstein, Emily S Lukacz, Lisa Karstens, Alan J Wolfe | MSystems | 2021-07-20 |
| Nutritional Interventions and the Gut Microbiome in Children. | Saurabh Mehta, Samantha L Huey, Daniel McDonald, Rob Knight, Julia L Finkelstein | Annual Review Of Nutrition | 2021-07-20 |
| Association Between the Urogenital Microbiome and Surgical Treatment Response in Women Undergoing Mid-urethral Sling Surgery for Mixed Urinary Incontinence. | Holly E Richter, Megan U Carnes, Yuko M Komesu, Emily S Lukacz, Lily Arya, Megan Bradley, Rebecca G Rogers, Vivian W Sung, Nazema Y Siddiqui, Benjamin Carper, Donna Mazloomdoost, Darryl Dinwiddie, Marie G Gantz, | American Journal Of Obstetrics And Gynecology | 2021-07-20 |
| Special Collection on the Microbiome and Infection. | Manuela Raffatellu, Andreas J Bäumler | Infection And Immunity | 2021-07-19 |
| Comparison of heat-inactivated and infectious SARS-CoV-2 across indoor surface materials shows comparable RT-qPCR viral signal intensity and persistence. | Rodolfo A Salido, Victor J Cantú, Alex E Clark, Sandra L Leibel, Anahid Foroughishafiei, Anushka Saha, Abbas Hakim, Alhakam Nouri, Alma L Lastrella, Anelizze Castro-Martínez, Ashley Plascencia, Bhavika Kapadia, Bing Xia, Christopher Ruiz, Clarisse A Marotz, Daniel Maunder, Elijah S Lawrence, Elizabeth W Smoot, Emily Eisner, Evelyn S Crescini, Laura Kohn, Lizbeth Franco Vargas, Marisol Chacón, Maryann Betty, Michal Machnicki, Min Yi Wu, Nathan A Baer, Pedro Belda-Ferre, Peter De Hoff, Phoebe Seaver, R Tyler Ostrander, Rebecca Tsai, Shashank Sathe, Stefan Aigner, Sydney C Morgan, Toan T Ngo, Tom Barber, Willi Cheung, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Rebecca Fielding-Miller, Rob Knight | BioRxiv : The Preprint Server For Biology | 2021-07-19 |
| Dynamic Changes of the Fungal Microbiome in Alcohol Use Disorder. | Phillipp Hartmann, Sonja Lang, Suling Zeng, Yi Duan, Xinlian Zhang, Yanhan Wang, Marina Bondareva, Andrey Kruglov, Derrick E Fouts, Peter Stärkel, Bernd Schnabl | Frontiers In Physiology | 2021-07-19 |
| Portobelamides A and B and Caciqueamide, Cytotoxic Peptidic Natural Products from a sp. Marine Cyanobacterium. | Ozlem Demirkiran, Jehad Almaliti, Tiago Leão, Gabriel Navarro, Tara Byrum, Frederick A Valeriote, Lena Gerwick, William H Gerwick | Journal Of Natural Products | 2021-07-16 |
| The microbiome and prostate cancer. | Juan Javier-DesLoges, Rana R McKay, Austin D Swafford, Gregory D Sepich-Poore, Rob Knight, J Kellogg Parsons | Prostate Cancer And Prostatic Diseases | 2021-07-15 |
| A Pilot Study of Microbial Succession in Human Rib Skeletal Remains during Terrestrial Decomposition. | Heather Deel, Alexandra L Emmons, Jennifer Kiely, Franklin E Damann, David O Carter, Aaron Lynne, Rob Knight, Zhenjiang Zech Xu, Sibyl Bucheli, Jessica L Metcalf | MSphere | 2021-07-14 |
| Genetic regulation of nonsense-mediated decay underlies association with risk of severe COVID-19. | A Rouf Banday, Megan L Stanifer, Oscar Florez-Vargas, Olusegun O Onabajo, Muhammad A Zahoor, Brenen W Papenberg, Timothy J Ring, Chia-Han Lee, Evangelos Andreakos, Evgeny Arons, Greg Barsh, Leslie G Biesecker, David L Boyle, Andrea Burnett-Hartman, Mary Carrington, Euijin Chang, Pyoeng Gyun Choe, Rex L Chrisholm, Clifton Dalgard, Jeff Edberg, Nathan Erdmann, Heather S Feigelson, Gary S Firestein, Adam J Gehring, Michelle Ho, Steven Holland, Amy A Hutchinson, Hogune Im, Michael G Ison, Hong Bin Kim, Robert J Kreitman, Bruce R Korf, Lisa Mirabello, Jennifer A Pacheco, Michael J Peluso, Daniel J Rader, David T Redden, Marylyn D Ritchie, Brooke Rosenbloom, Hanaisa P Sant Anna, Sharon Savage, Eleni Siouti, Vasiliki Triantafyllia, Joselin M Vargas, Anurag Verma, Vibha Vij, Duane R Wesemann, Meredith Yeager, Xu Yu, Yu Zhang, Steeve Boulant, Stephen J Chanock, Jordan J Feld, Ludmila Prokunina-Olsson | MedRxiv : The Preprint Server For Health Sciences | 2021-07-13 |
| HIV vaccinology: 2021 update. | Jeong Hyun Lee, Shane Crotty | Seminars In Immunology | 2021-07-13 |
| A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity. | Gongchao Jing, Yufeng Zhang, Lu Liu, Zengbin Wang, Zheng Sun, Rob Knight, Xiaoquan Su, Jian Xu | MSystems | 2021-07-13 |
| Artificial intelligence guided discovery of a barrier-protective therapy in inflammatory bowel disease. | Debashis Sahoo, Lee Swanson, Ibrahim M Sayed, Gajanan D Katkar, Stella-Rita Ibeawuchi, Yash Mittal, Rama F Pranadinata, Courtney Tindle, Mackenzie Fuller, Dominik L Stec, John T Chang, William J Sandborn, Soumita Das, Pradipta Ghosh | Nature Communications | 2021-07-12 |
| Quick-start infrastructure for untargeted metabolomics analysis in GNPS. | Tiago F Leao, Chase M Clark, Anelize Bauermeister, Emmanuel O Elijah, Emily C Gentry, Makhai Husband, Michelli F Oliveira, Nuno Bandeira, Mingxun Wang, Pieter C Dorrestein | Nature Metabolism | 2021-07-09 |
| Publisher Correction: Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery. | Bahar Behsaz, Edna Bode, Alexey Gurevich, Yan-Ni Shi, Florian Grundmann, Deepa Acharya, Andrés Mauricio Caraballo-Rodríguez, Amina Bouslimani, Morgan Panitchpakdi, Annabell Linck, Changhui Guan, Julia Oh, Pieter C Dorrestein, Helge B Bode, Pavel A Pevzner, Hosein Mohimani | Nature Communications | 2021-07-08 |
| Genome-wide CRISPR/Cas9 screening in human iPS derived cardiomyocytes uncovers novel mediators of doxorubicin cardiotoxicity. | Valerie Sapp, Aitor Aguirre, Gayatri Mainkar, Jeffrey Ding, Eric Adler, Ronglih Liao, Sonia Sharma, Mohit Jain | Scientific Reports | 2021-07-06 |
| Ruminiclostridium 5, Parabacteroides distasonis, and bile acid profile are modulated by prebiotic diet and associate with facilitated sleep/clock realignment after chronic disruption of rhythms. | Robert S Thompson, Michelle Gaffney, Shelby Hopkins, Tel Kelley, Antonio Gonzalez, Samuel J Bowers, Martha Hotz Vitaterna, Fred W Turek, Christine L Foxx, Christopher A Lowry, Fernando Vargas, Pieter C Dorrestein, Kenneth P Wright, Rob Knight, Monika Fleshner | Brain, Behavior, And Immunity | 2021-07-06 |
| Microbiome is not linked to clinical disease severity of familial Mediterranean fever in an international cohort of children. | Seza Ozen, Holly L Lutz, Vanessa M Rivera, Andreas Reiff, Ezgi Deniz Batu, Edwin Anderson, Mariana Salas Garcia, Grace Aldrovandi, Tayfun Hilmi Akbaba, İlker Pazarbasi, Yelda Bilginer, Ayse Balat, Banu Balci-Peynircioglu, Jack A Gilbert, Fatma Dedeoglu, Jonathan S Hausmann | Clinical And Experimental Rheumatology | 2021-07-05 |
| Impact of SARS-CoV-2 variants on the total CD4 and CD8 T cell reactivity in infected or vaccinated individuals. | Alison Tarke, John Sidney, Nils Methot, Esther Dawen Yu, Yun Zhang, Jennifer M Dan, Benjamin Goodwin, Paul Rubiro, Aaron Sutherland, Eric Wang, April Frazier, Sydney I Ramirez, Stephen A Rawlings, Davey M Smith, Ricardo da Silva Antunes, Bjoern Peters, Richard H Scheuermann, Daniela Weiskopf, Shane Crotty, Alba Grifoni, Alessandro Sette | Cell Reports. Medicine | 2021-07-02 |
| Gut Microbiota in Liver Disease: What Do We Know and What Do We Not Know? | Lu Jiang, Bernd Schnabl | Physiology (Bethesda, Md.) | 2021-07-01 |
| Display of the human mucinome with defined O-glycans by gene engineered cells. | Rebecca Nason, Christian Büll, Andriana Konstantinidi, Lingbo Sun, Zilu Ye, Adnan Halim, Wenjuan Du, Daniel M Sørensen, Fabien Durbesson, Sanae Furukawa, Ulla Mandel, Hiren J Joshi, Leo Alexander Dworkin, Lars Hansen, Leonor David, Tina M Iverson, Barbara A Bensing, Paul M Sullam, Ajit Varki, Erik de Vries, Cornelis A M de Haan, Renaud Vincentelli, Bernard Henrissat, Sergey Y Vakhrushev, Henrik Clausen, Yoshiki Narimatsu | Nature Communications | 2021-07-01 |
| The Relationships between HIV-1 Infection, History of Methamphetamine Use Disorder, and Soluble Biomarkers in Blood and Cerebrospinal Fluid. | T Jordan Walter, Jennifer Iudicello, Debra Rosario Cookson, Donald Franklin, Bin Tang, Jared W Young, William Perry, Ronald Ellis, Robert K Heaton, Igor Grant, Arpi Minassian, Scott Letendre, On Behalf Of The Translational Methamphetamine Aids Research Center Tmarc | Viruses | 2021-07-01 |
| Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome. | Shi Huang, Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu, Pedro Belda-Ferre, Yoshiki Vázquez-Baeza, Qiyun Zhu, Chenchen Ma, Congfa Li, Amir Zarrinpar, Yang-Yu Liu, Rob Knight, Jiachao Zhang | Microbiome | 2021-06-30 |
| Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome. | Celeste Allaband, Amulya Lingaraju, Cameron Martino, Baylee Russell, Anupriya Tripathi, Orit Poulsen, Ana Carolina Dantas Machado, Dan Zhou, Jin Xue, Emmanuel Elijah, Atul Malhotra, Pieter C Dorrestein, Rob Knight, Gabriel G Haddad, Amir Zarrinpar | MSystems | 2021-06-29 |
| The neglected brothers come of age: B cells and cancer. | Shabnam Shalapour, Michael Karin | Seminars In Immunology | 2021-06-29 |
| ORFograph: search for novel insecticidal protein genes in genomic and metagenomic assembly graphs. | Tatiana Dvorkina, Anton Bankevich, Alexei Sorokin, Fan Yang, Boahemaa Adu-Oppong, Ryan Williams, Keith Turner, Pavel A Pevzner | Microbiome | 2021-06-28 |
| Associations between Afrotropical bats, eukaryotic parasites, and microbial symbionts. | Holly L Lutz, Jack A Gilbert, Carl W Dick | Molecular Ecology | 2021-06-28 |
| Microbiota Modulates Cardiac Transcriptional Responses to Intermittent Hypoxia and Hypercapnia. | Dan Zhou, Jin Xue, Yukiko Miyamoto, Orit Poulsen, Lars Eckmann, Gabriel G Haddad | Frontiers In Physiology | 2021-06-25 |
| Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus. | Henrique Machado, Yara Seif, George Sakoulas, Connor A Olson, Ying Hefner, Amitesh Anand, Ying Z Jones, Richard Szubin, Bernhard O Palsson, Victor Nizet, Adam M Feist | Communications Biology | 2021-06-25 |
| Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops. | Matthew R Dillon, Evan Bolyen, Anja Adamov, Aeriel Belk, Emily Borsom, Zachary Burcham, Justine W Debelius, Heather Deel, Alex Emmons, Mehrbod Estaki, Chloe Herman, Christopher R Keefe, Jamie T Morton, Renato R M Oliveira, Andrew Sanchez, Anthony Simard, Yoshiki Vázquez-Baeza, Michal Ziemski, Hazuki E Miwa, Terry A Kerere, Carline Coote, Richard Bonneau, Rob Knight, Guilherme Oliveira, Piraveen Gopalasingam, Benjamin D Kaehler, Emily K Cope, Jessica L Metcalf, Michael S Robeson Ii, Nicholas A Bokulich, J Gregory Caporaso | PLoS Computational Biology | 2021-06-24 |
| induces maize-derived ethylene to promote virulence by engaging fungal G-protein signaling. | Yong-Soon Park, Eli J Borrego, Xiquan Gao, Shawn A Christensen, Eric Schmelz, Alessandra Lanubile, Dillon A Drab, Will Cody, Huijuan Yan, Won-Bo Shim, Michael V Kolomiets | Molecular Plant-microbe Interactions : MPMI | 2021-06-24 |
| Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth. | Colton J Lloyd, Jonathan Monk, Laurence Yang, Ali Ebrahim, Bernhard O Palsson | PLoS Computational Biology | 2021-06-23 |
| Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment. | Robin Schmid, Daniel Petras, Louis-Félix Nothias, Mingxun Wang, Allegra T Aron, Annika Jagels, Hiroshi Tsugawa, Johannes Rainer, Mar Garcia-Aloy, Kai Dührkop, Ansgar Korf, Tomáš Pluskal, Zdeněk Kameník, Alan K Jarmusch, Andrés Mauricio Caraballo-Rodríguez, Kelly C Weldon, Melissa Nothias-Esposito, Alexander A Aksenov, Anelize Bauermeister, Andrea Albarracin Orio, Carlismari O Grundmann, Fernando Vargas, Irina Koester, Julia M Gauglitz, Emily C Gentry, Yannick Hövelmann, Svetlana A Kalinina, Matthew A Pendergraft, Morgan Panitchpakdi, Richard Tehan, Audrey Le Gouellec, Gajender Aleti, Helena Mannochio Russo, Birgit Arndt, Florian Hübner, Heiko Hayen, Hui Zhi, Manuela Raffatellu, Kimberly A Prather, Lihini I Aluwihare, Sebastian Böcker, Kerry L McPhail, Hans-Ulrich Humpf, Uwe Karst, Pieter C Dorrestein | Nature Communications | 2021-06-22 |
| Gut microbiota mediate the FGF21 adaptive stress response to chronic dietary protein-restriction in mice. | Anthony Martin, Gertrude Ecklu-Mensah, Connie W Y Ha, Gustaf Hendrick, Donald K Layman, Jack Gilbert, Suzanne Devkota | Nature Communications | 2021-06-22 |
| Editorial: Regulators of a Regulator: Post-Transcriptional Regulation in Tregs. | Xuyu Zhou, Li-Fan Lu | Frontiers In Immunology | 2021-06-22 |
| The single-cell epigenomic and transcriptional landscape of immunity to influenza vaccination. | Florian Wimmers, Michele Donato, Alex Kuo, Tal Ashuach, Shakti Gupta, Chunfeng Li, Mai Dvorak, Mariko Hinton Foecke, Sarah E Chang, Thomas Hagan, Sanne E De Jong, Holden T Maecker, Robbert van der Most, Peggie Cheung, Mario Cortese, Steven E Bosinger, Mark Davis, Nadine Rouphael, Shankar Subramaniam, Nir Yosef, Paul J Utz, Purvesh Khatri, Bali Pulendran | Cell | 2021-06-22 |
| Alterations in bile acid metabolizing gut microbiota and specific bile acid genes as a precision medicine to subclassify NAFLD. | Na Jiao, Rohit Loomba, Zi-Huan Yang, Dingfeng Wu, Sa Fang, Richele Bettencourt, Ping Lan, Ruixin Zhu, Lixin Zhu | Physiological Genomics | 2021-06-21 |
| Naturalization of the microbiota developmental trajectory of Cesarean-born neonates after vaginal seeding. | Se Jin Song, Jincheng Wang, Cameron Martino, Lingjing Jiang, Wesley K Thompson, Liat Shenhav, Daniel McDonald, Clarisse Marotz, Paul R Harris, Caroll D Hernandez, Nora Henderson, Elizabeth Ackley, Deanna Nardella, Charles Gillihan, Valentina Montacuti, William Schweizer, Melanie Jay, Joan Combellick, Haipeng Sun, Izaskun Garcia-Mantrana, Fernando Gil Raga, Maria Carmen Collado, Juana I Rivera-Viñas, Maribel Campos-Rivera, Jean F Ruiz-Calderon, Rob Knight, Maria Gloria Dominguez-Bello | Med (New York, N.Y.) | 2021-06-17 |
| The Cocaine and Oxycodone Biobanks, Two Repositories from Genetically Diverse and Behaviorally Characterized Rats for the Study of Addiction. | Lieselot L G Carrette, Giordano de Guglielmo, Marsida Kallupi, Lisa Maturin, Molly Brennan, Brent Boomhower, Dana Conlisk, Sharona Sedighim, Lani Tieu, McKenzie J Fannon, Nathan Velarde, Angelica R Martinez, Jenni Kononoff, Adam Kimbrough, Sierra Simpson, Lauren C Smith, Kokila Shankar, Francisco J Ramirez, Apurva S Chitre, Bonnie Lin, Oksana Polesskaya, Leah C Solberg Woods, Abraham A Palmer, Olivier George | ENeuro | 2021-06-17 |
| Use of Autologous Bacteriotherapy to Treat Staphylococcus aureus in Patients With Atopic Dermatitis: A Randomized Double-blind Clinical Trial. | Teruaki Nakatsuji, Richard L Gallo, Faiza Shafiq, Yun Tong, Kimberly Chun, Anna M Butcher, Joyce Y Cheng, Tissa R Hata | JAMA Dermatology | 2021-06-16 |
| Host and gut microbial tryptophan metabolism and type 2 diabetes: an integrative analysis of host genetics, diet, gut microbiome and circulating metabolites in cohort studies. | Qibin Qi, Jun Li, Bing Yu, Jee-Young Moon, Jin C Chai, Jordi Merino, Jie Hu, Miguel Ruiz-Canela, Casey Rebholz, Zheng Wang, Mykhaylo Usyk, Guo-Chong Chen, Bianca C Porneala, Wenshuang Wang, Ngoc Quynh Nguyen, Elena V Feofanova, Megan L Grove, Thomas J Wang, Robert E Gerszten, Josée Dupuis, Jordi Salas-Salvadó, Wei Bao, David L Perkins, Martha L Daviglus, Bharat Thyagarajan, Jianwen Cai, Tao Wang, JoAnn E Manson, Miguel A Martínez-González, Elizabeth Selvin, Kathryn M Rexrode, Clary B Clish, Frank B Hu, James B Meigs, Rob Knight, Robert D Burk, Eric Boerwinkle, Robert C Kaplan | Gut | 2021-06-14 |
| Colesevelam Reduces Ethanol-Induced Liver Steatosis in Humanized Gnotobiotic Mice. | Noemí Cabré, Yi Duan, Cristina Llorente, Mary Conrad, Patrick Stern, Dennis Yamashita, Bernd Schnabl | Cells | 2021-06-14 |
| AI-guided discovery of the invariant host response to viral pandemics. | Debashis Sahoo, Gajanan D Katkar, Soni Khandelwal, Mahdi Behroozikhah, Amanraj Claire, Vanessa Castillo, Courtney Tindle, MacKenzie Fuller, Sahar Taheri, Thomas F Rogers, Nathan Beutler, Sydney I Ramirez, Stephen A Rawlings, Victor Pretorius, Davey M Smith, Dennis R Burton, Laura E Crotty Alexander, Jason Duran, Shane Crotty, Jennifer M Dan, Soumita Das, Pradipta Ghosh | EBioMedicine | 2021-06-11 |
| Clinical characteristics and risk factors for death among hospitalised children and adolescents with COVID-19 in Brazil: an analysis of a nationwide database. | Eduardo A Oliveira, Enrico A Colosimo, Ana Cristina Simões E Silva, Robert H Mak, Daniella B Martelli, Ludmila R Silva, Hercílio Martelli-Júnior, Maria Christina L Oliveira | The Lancet. Child & Adolescent Health | 2021-06-11 |
| Metformin inhibition of mitochondrial ATP and DNA synthesis abrogates NLRP3 inflammasome activation and pulmonary inflammation. | Hongxu Xian, Yuan Liu, Alexandra Rundberg Nilsson, Raphaella Gatchalian, Timothy R Crother, Warren G Tourtellotte, Yi Zhang, German R Aleman-Muench, Gavin Lewis, Weixuan Chen, Sarah Kang, Melissa Luevanos, Dorit Trudler, Stuart A Lipton, Pejman Soroosh, John Teijaro, Juan Carlos de la Torre, Moshe Arditi, Michael Karin, Elsa Sanchez-Lopez | Immunity | 2021-06-10 |
| Social network analysis and whole-genome sequencing to evaluate disease transmission in a large, dynamic population: A study of avian mycobacteriosis in zoo birds. | Carmel Witte, James H Fowler, Wayne Pfeiffer, Laura L Hungerford, Josephine Braun, Jennifer Burchell, Rebecca Papendick, Bruce A Rideout | PloS One | 2021-06-09 |
| A segmentation clock patterns cellular differentiation in a bacterial biofilm. | Kwang-Tao Chou, Dong-Yeon D Lee, Jian-Geng Chiou, Leticia Galera-Laporta, San Ly, Jordi Garcia-Ojalvo, Gürol M Süel | Cell | 2021-06-09 |
| SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment. | Clarisse Marotz, Pedro Belda-Ferre, Farhana Ali, Promi Das, Shi Huang, Kalen Cantrell, Lingjing Jiang, Cameron Martino, Rachel E Diner, Gibraan Rahman, Daniel McDonald, George Armstrong, Sho Kodera, Sonya Donato, Gertrude Ecklu-Mensah, Neil Gottel, Mariana C Salas Garcia, Leslie Y Chiang, Rodolfo A Salido, Justin P Shaffer, Mac Kenzie Bryant, Karenina Sanders, Greg Humphrey, Gail Ackermann, Niina Haiminen, Kristen L Beck, Ho-Cheol Kim, Anna Paola Carrieri, Laxmi Parida, Yoshiki Vázquez-Baeza, Francesca J Torriani, Rob Knight, Jack Gilbert, Daniel A Sweeney, Sarah M Allard | Microbiome | 2021-06-08 |
| Maternal milk microbiota and oligosaccharides contribute to the infant gut microbiota assembly. | Martin Frederik Laursen, Ceyda T Pekmez, Melanie Wange Larsson, Mads Vendelbo Lind, Chloe Yonemitsu, Anni Larnkjær, Christian Mølgaard, Lars Bode, Lars Ove Dragsted, Kim F Michaelsen, Tine Rask Licht, Martin Iain Bahl | ISME Communications | 2021-06-07 |
| Airborne transmission pathway for coastal water pollution. | Matthew A Pendergraft, Derek J Grimes, Sarah N Giddings, Falk Feddersen, Charlotte M Beall, Christopher Lee, Mitchell V Santander, Kimberly A Prather | PeerJ | 2021-06-07 |
| Assessment of patient recognition of coronavirus disease 2019 (COVID-19)-associated olfactory loss and recovery: a longitudinal study. | Divya P Prajapati, Bita Shahrvini, Mena Said, Shanmukha Srinivas, Adam S DeConde, Carol H Yan | International Forum Of Allergy & Rhinology | 2021-06-06 |
| Coevolutionary phage training leads to greater bacterial suppression and delays the evolution of phage resistance. | Joshua M Borin, Sarit Avrani, Jeffrey E Barrick, Katherine L Petrie, Justin R Meyer | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-06-04 |
| Mining genomes to illuminate the specialized chemistry of life. | Marnix H Medema, Tristan de Rond, Bradley S Moore | Nature Reviews. Genetics | 2021-06-03 |
| Biotechnology for secure biocontainment designs in an emerging bioeconomy. | Kathleen L Arnolds, Lukas R Dahlin, Lin Ding, Chao Wu, Jianping Yu, Wei Xiong, Cristal Zuniga, Yo Suzuki, Karsten Zengler, Jeffrey G Linger, Michael T Guarnieri | Current Opinion In Biotechnology | 2021-06-03 |
| Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers. | Qiyun Zhu, Qiangchuan Hou, Shi Huang, Qianying Ou, Dongxue Huo, Yoshiki Vázquez-Baeza, Chaoping Cen, Victor Cantu, Mehrbod Estaki, Haibo Chang, Pedro Belda-Ferre, Ho-Cheol Kim, Kaining Chen, Rob Knight, Jiachao Zhang | The ISME Journal | 2021-06-02 |
| Compositional Differences in the Oral Microbiome of E-cigarette Users. | Jessica Chopyk, Christine M Bojanowski, John Shin, Alex Moshensky, Ana Lucia Fuentes, Saniya S Bonde, Dagni Chuki, David T Pride, Laura E Crotty Alexander | Frontiers In Microbiology | 2021-05-31 |
| Individuals with substance use disorders have a distinct oral microbiome pattern. | Tomasz Kosciolek, Teresa A Victor, Rayus Kuplicki, Maret Rossi, Mehrbod Estaki, Gail Ackermann, , Rob Knight, Martin P Paulus | Brain, Behavior, & Immunity - Health | 2021-05-29 |
| Non-alcoholic Steatohepatitis and HCC in a Hyperphagic Mouse Accelerated by Western Diet. | Souradipta Ganguly, German Aleman Muench, Linshan Shang, Sara Brin Rosenthal, Gibraan Rahman, Ruoyu Wang, Yanhan Wang, Hyeok Choon Kwon, Anthony M Diomino, Tatiana Kisseleva, Pejman Soorosh, Mojgan Hosseini, Rob Knight, Bernd Schnabl, David A Brenner, Debanjan Dhar | Cellular And Molecular Gastroenterology And Hepatology | 2021-05-29 |
| Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery. | Bahar Behsaz, Edna Bode, Alexey Gurevich, Yan-Ni Shi, Florian Grundmann, Deepa Acharya, Andrés Mauricio Caraballo-Rodríguez, Amina Bouslimani, Morgan Panitchpakdi, Annabell Linck, Changhui Guan, Julia Oh, Pieter C Dorrestein, Helge B Bode, Pavel A Pevzner, Hosein Mohimani | Nature Communications | 2021-05-28 |
| COVID-19 Severity Potentially Modulated by Cardiovascular-Disease-Associated Immune Dysregulation. | Abby C Lee, Grant Castaneda, Wei Tse Li, Chengyu Chen, Neil Shende, Jaideep Chakladar, Pam R Taub, Eric Y Chang, Weg M Ongkeko | Viruses | 2021-05-28 |
| Transmission of SARS-CoV-2: still up in the air - Authors' reply. | Trisha Greenhalgh, Jose L Jimenez, Kimberly A Prather, Zeynep Tufeki, David Fisman, Robert Schooley | Lancet (London, England) | 2021-05-28 |
| Recurrent urinary tract infection: Association of clinical profiles with urobiome composition in women. | Lindsey A Burnett, Baylie R Hochstedler, Kelly Weldon, Alan J Wolfe, Linda Brubaker | Neurourology And Urodynamics | 2021-05-26 |
| Bromodomain protein BRD4 directs and sustains CD8 T cell differentiation during infection. | J Justin Milner, Clara Toma, Sara Quon, Kyla Omilusik, Nicole E Scharping, Anup Dey, Miguel Reina-Campos, Hongtuyet Nguyen, Adam J Getzler, Huitian Diao, Bingfei Yu, Arnaud Delpoux, Tomomi M Yoshida, Deyao Li, Jun Qi, Adam Vincek, Stephen M Hedrick, Takeshi Egawa, Ming-Ming Zhou, Shane Crotty, Keiko Ozato, Matthew E Pipkin, Ananda W Goldrath | The Journal Of Experimental Medicine | 2021-05-26 |
| Structure-based protein function prediction using graph convolutional networks. | Vladimir Gligorijević, P Douglas Renfrew, Tomasz Kosciolek, Julia Koehler Leman, Daniel Berenberg, Tommi Vatanen, Chris Chandler, Bryn C Taylor, Ian M Fisk, Hera Vlamakis, Ramnik J Xavier, Rob Knight, Kyunghyun Cho, Richard Bonneau | Nature Communications | 2021-05-26 |
| The quantitative metabolome is shaped by abiotic constraints. | Amir Akbari, James T Yurkovich, Daniel C Zielinski, Bernhard O Palsson | Nature Communications | 2021-05-26 |
| Kawasaki Disease Patient Stratification and Pathway Analysis Based on Host Transcriptomic and Proteomic Profiles. | Heather Jackson, Stephanie Menikou, Shea Hamilton, Andrew McArdle, Chisato Shimizu, Rachel Galassini, Honglei Huang, Jihoon Kim, Adriana Tremoulet, Adam Thorne, Roman Fischer, Marien I de Jonge, Taco Kuijpers, Victoria Wright, Jane C Burns, Climent Casals-Pascual, Jethro Herberg, Mike Levin, Myrsini Kaforou, On Behalf Of The Perform Consortium | International Journal Of Molecular Sciences | 2021-05-26 |
| Activatable Carbocyanine Dimers for Photoacoustic and Fluorescent Detection of Protease Activity. | Colman Moore, Raina M Borum, Yash Mantri, Ming Xu, Pavla Fajtová, Anthony J O'Donoghue, Jesse V Jokerst | ACS Sensors | 2021-05-26 |
| A phenotypically supervised single-cell analysis protocol to study within-cell-type heterogeneity of cultured mammalian cells. | Kevin Chen, Kivilcim Ozturk, Ted Liefeld, Michael Reich, Jill P Mesirov, Hannah Carter, Stephanie I Fraley | STAR Protocols | 2021-05-25 |
| Sequence determinants in the cathelicidin LL37 that promote inflammation via presentation of RNA to scavenger receptors. | Nikhil N Kulkarni, Alan M O'Neill, Tatsuya Dokoshi, Elizabeth W C Luo, Gerard C L Wong, Richard L Gallo | The Journal Of Biological Chemistry | 2021-05-25 |
| Associations of healthy food choices with gut microbiota profiles. | Kari K Koponen, Aaro Salosensaari, Matti O Ruuskanen, Aki S Havulinna, Satu Männistö, Pekka Jousilahti, Joonatan Palmu, Rodolfo Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Guillaume Meric, Susan Cheng, Michael Inouye, Mohit Jain, Teemu J Niiranen, Liisa M Valsta, Rob Knight, Veikko V Salomaa | The American Journal Of Clinical Nutrition | 2021-05-21 |
| Hypoxia-Inducible Factor 1 Alpha Is Dispensable for Host Defense of Group B Streptococcus Colonization and Infection. | Gregory R Lum, Vicki Mercado, Diede van Ens, Victor Nizet, Jacqueline M Kimmey, Kathryn A Patras | Journal Of Innate Immunity | 2021-05-21 |
| Asymmetric localization of the cell division machinery during sporulation. | Kanika Khanna, Javier Lopez Garrido, Joseph Sugie, Kit Pogliano, Elizabeth Villa | ELife | 2021-05-21 |
| SARS-CoV-2 human T cell epitopes: Adaptive immune response against COVID-19. | Alba Grifoni, John Sidney, Randi Vita, Bjoern Peters, Shane Crotty, Daniela Weiskopf, Alessandro Sette | Cell Host & Microbe | 2021-05-21 |
| Impact of Vaginal Estrogen on the Urobiome in Postmenopausal Women With Recurrent Urinary Tract Infection. | Carrie E Jung, Mehrbod Estaki, Jessica Chopyk, Bryn C Taylor, Antonio Gonzalez, Daniel McDonald, Jenny Shin, Kimberly Ferrante, Erika Wasenda, Quinn Lippmann, Rob Knight, David Pride, Emily S Lukacz | Female Pelvic Medicine & Reconstructive Surgery | 2021-05-19 |
| Cross-reactive serum and memory B-cell responses to spike protein in SARS-CoV-2 and endemic coronavirus infection. | Ge Song, Wan-Ting He, Sean Callaghan, Fabio Anzanello, Deli Huang, James Ricketts, Jonathan L Torres, Nathan Beutler, Linghang Peng, Sirena Vargas, Jon Cassell, Mara Parren, Linlin Yang, Caroline Ignacio, Davey M Smith, James E Voss, David Nemazee, Andrew B Ward, Thomas Rogers, Dennis R Burton, Raiees Andrabi | Nature Communications | 2021-05-19 |
| Are sialic acids involved in COVID-19 pathogenesis? | Chirag Dhar, Aniruddha Sasmal, Sandra Diaz, Andrea Verhagen, Hai Yu, Wanqing Li, Xi Chen, Ajit Varki | Glycobiology | 2021-05-14 |
| Challenges in benchmarking metagenomic profilers. | Zheng Sun, Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen, Anna Paola Carrieri, Yoshiki Vázquez-Baeza, Laxmi Parida, Ho-Cheol Kim, Rob Knight, Yang-Yu Liu | Nature Methods | 2021-05-13 |
| Dysregulation of Glycerophosphocholines in the Cutaneous Lesion Caused by in Experimental Murine Models. | Adwaita R Parab, Diane Thomas, Sharon Lostracco-Johnson, Jair L Siqueira-Neto, James H McKerrow, Pieter C Dorrestein, Laura-Isobel McCall | Pathogens (Basel, Switzerland) | 2021-05-13 |
| Impacts of the Marine Hatchery Built Environment, Water and Feed on Mucosal Microbiome Colonization Across Ontogeny in Yellowtail Kingfish, . | Jeremiah J Minich, Barbara Nowak, Abigail Elizur, Rob Knight, Stewart Fielder, Eric E Allen | Frontiers In Marine Science | 2021-05-13 |
| Phylogenetic analysis of the salinipostin γ-butyrolactone gene cluster uncovers new potential for bacterial signalling-molecule diversity. | Kaitlin E Creamer, Yuta Kudo, Bradley S Moore, Paul R Jensen | Microbial Genomics | 2021-05-12 |
| Taxonomic signatures of cause-specific mortality risk in human gut microbiome. | Aaro Salosensaari, Ville Laitinen, Aki S Havulinna, Guillaume Meric, Susan Cheng, Markus Perola, Liisa Valsta, Georg Alfthan, Michael Inouye, Jeramie D Watrous, Tao Long, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Mohit Jain, Pekka Jousilahti, Veikko Salomaa, Rob Knight, Leo Lahti, Teemu Niiranen | Nature Communications | 2021-05-11 |
| Intratumoral bacteria generate a new class of therapeutically relevant tumor antigens in melanoma. | Gregory D Sepich-Poore, Hannah Carter, Rob Knight | Cancer Cell | 2021-05-11 |
| 3D Visualization of Immune Cell Populations in HIV-Infected Tissues via Clearing, Immunostaining, Confocal, and Light Sheet Fluorescence Microscopy. | Tongyu Zhang, Auroni Gupta, Deborah Frederick, Laura Layman, Davey M Smith, Sara Gianella, Collin Kieffer | Journal Of Visualized Experiments : JoVE | 2021-05-06 |
| Insight into the function and evolution of the Wood-Ljungdahl pathway in Actinobacteria. | Jian-Yu Jiao, Li Fu, Zheng-Shuang Hua, Lan Liu, Nimaichand Salam, Peng-Fei Liu, Ai-Ping Lv, Geng Wu, Wen-Dong Xian, Qiyun Zhu, En-Min Zhou, Bao-Zhu Fang, Aharon Oren, Brian P Hedlund, Hong-Chen Jiang, Rob Knight, Lei Cheng, Wen-Jun Li | The ISME Journal | 2021-05-05 |
| METTL3 regulates viral m6A RNA modification and host cell innate immune responses during SARS-CoV-2 infection. | Na Li, Hui Hui, Bill Bray, Gwendolyn Michelle Gonzalez, Mark Zeller, Kristian G Anderson, Rob Knight, Davey Smith, Yinsheng Wang, Aaron F Carlin, Tariq M Rana | Cell Reports | 2021-05-03 |
| Presence of asymptomatic cytomegalovirus and Epstein--Barr virus DNA in blood of persons with HIV starting antiretroviral therapy is associated with non-AIDS clinical events. | Sara Gianella, Carlee Moser, Andrej Vitomirov, Ashley McKhann, Laura Layman, Brianna Scott, Gemma Caballero, Steven Lada, Ronald J Bosch, Martin Hoenigl, Nell Lurain, Alan Landay, Michael M Lederman, Peter W Hunt, Davey Smith | AIDS (London, England) | 2021-05-01 |
| Microbes and Geriatric Mental Health: Past, Present, and Future. | Eleonora D Vaccariello, Tanya T Nguyen | International Psychogeriatrics | 2021-04-30 |
| Gut microbiota through an evolutionary lens. | Rachel N Carmody, Amar Sarkar, Aspen T Reese | Science (New York, N.Y.) | 2021-04-30 |
| Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data. | Lingjing Jiang, Niina Haiminen, Anna-Paola Carrieri, Shi Huang, Yoshiki Vã Zquez-Baeza, Laxmi Parida, Ho-Cheol Kim, Austin D Swafford, Rob Knight, Loki Natarajan | Biometrics | 2021-04-29 |
| Infant Gut Microbiome Is Enriched with Bifidobacteria longumssp. infantisin Old Order Mennoniteswith Traditional Farming Lifestyle. | Antti E Seppo, Kevin Bu, Madina Jumabaeva, Juilee Thakar, RakinA Choudhury, Chloe Yonemitsu, Lars Bode, Camille A Martina, Maria Allen, Sabrina Tamburini, Enrica Piras, David S Wallach, R John Looney, Jose C Clemente, Kirsi M Järvinen | Allergy | 2021-04-27 |
| Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition. | Clarisse Marotz, Kellen J Cavagnero, Se Jin Song, Daniel McDonald, Stephen Wandro, Greg Humphrey, MacKenzie Bryant, Gail Ackermann, Edgar Diaz, Rob Knight | MSystems | 2021-04-27 |
| Grincamycins P-T: Rearranged Angucyclines from the Marine Sediment-Derived sp. CNZ-748 Inhibit Cell Lines of the Rare Cancer Pseudomyxoma Peritonei. | Zhuo Shang, Zachary E Ferris, Douglas Sweeney, Alexander B Chase, Chunhua Yuan, Yvonne Hui, Lukuan Hou, Ethan A Older, Dan Xue, Xiaoyu Tang, Weipeng Zhang, Prakash Nagarkatti, Mitzi Nagarkatti, Traci L Testerman, Paul R Jensen, Jie Li | Journal Of Natural Products | 2021-04-26 |
| Combined analysis of gut microbiota, diet and PNPLA3 polymorphism in biopsy-proven non-alcoholic fatty liver disease. | Sonja Lang, Anna Martin, Xinlian Zhang, Fedja Farowski, Hilmar Wisplinghoff, Maria J G T Vehreschild, Marcin Krawczyk, Angela Nowag, Anne Kretzschmar, Claus Scholz, Philipp Kasper, Christoph Roderburg, Raphael Mohr, Frank Lammert, Frank Tacke, Bernd Schnabl, Tobias Goeser, Hans-Michael Steffen, Münevver Demir | Liver International : Official Journal Of The International Association For The Study Of The Liver | 2021-04-25 |
| The purine nucleoside phosphorylase pnp-1 regulates epithelial cell resistance to infection in C. elegans. | Eillen Tecle, Crystal B Chhan, Latisha Franklin, Ryan S Underwood, Wendy Hanna-Rose, Emily R Troemel | PLoS Pathogens | 2021-04-20 |
| Adjuvanting a subunit COVID-19 vaccine to induce protective immunity. | Prabhu S Arunachalam, Alexandra C Walls, Nadia Golden, Caroline Atyeo, Stephanie Fischinger, Chunfeng Li, Pyone Aye, Mary Jane Navarro, Lilin Lai, Venkata Viswanadh Edara, Katharina Röltgen, Kenneth Rogers, Lisa Shirreff, Douglas E Ferrell, Samuel Wrenn, Deleah Pettie, John C Kraft, Marcos C Miranda, Elizabeth Kepl, Claire Sydeman, Natalie Brunette, Michael Murphy, Brooke Fiala, Lauren Carter, Alexander G White, Meera Trisal, Ching-Lin Hsieh, Kasi Russell-Lodrigue, Christopher Monjure, Jason Dufour, Skye Spencer, Lara Doyle-Meyer, Rudolph P Bohm, Nicholas J Maness, Chad Roy, Jessica A Plante, Kenneth S Plante, Alex Zhu, Matthew J Gorman, Sally Shin, Xiaoying Shen, Jane Fontenot, Shakti Gupta, Derek T O'Hagan, Robbert Van Der Most, Rino Rappuoli, Robert L Coffman, David Novack, Jason S McLellan, Shankar Subramaniam, David Montefiori, Scott D Boyd, JoAnne L Flynn, Galit Alter, Francois Villinger, Harry Kleanthous, Jay Rappaport, Mehul S Suthar, Neil P King, David Veesler, Bali Pulendran | Nature | 2021-04-19 |
| Risk factors and characteristics associated with persistent smell loss in coronavirus disease 2019 (COVID-19) patients. | Bita Shahrvini, Divya P Prajapati, Mena Said, Jacklyn Liu, Shanmukha Srinivas, Samuel Jayaraj, Valerie J Lund, Adam S DeConde, Matt Lechner, Carol H Yan | International Forum Of Allergy & Rhinology | 2021-04-17 |
| Uremic Toxins in Organ Crosstalk. | Jerome Lowenstein, Sanjay K Nigam | Frontiers In Medicine | 2021-04-16 |
| Ten scientific reasons in support of airborne transmission of SARS-CoV-2. | Trisha Greenhalgh, Jose L Jimenez, Kimberly A Prather, Zeynep Tufekci, David Fisman, Robert Schooley | Lancet (London, England) | 2021-04-15 |
| Urinary microbiota of women with recurrent urinary tract infection: collection and culture methods. | Baylie R Hochstedler, Lindsey Burnett, Travis K Price, Carrie Jung, Alan J Wolfe, Linda Brubaker | International Urogynecology Journal | 2021-04-14 |
| Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection. | Andre Mu, Daniel McDonald, Alan K Jarmusch, Cameron Martino, Caitriona Brennan, Mackenzie Bryant, Gregory C Humphrey, Julia Toronczak, Tara Schwartz, Dominic Nguyen, Gail Ackermann, Anthony D'Onofrio, Steffanie A Strathdee, Robert T Schooley, Pieter C Dorrestein, Rob Knight, Saima Aslam | Microbiome | 2021-04-14 |
| Neuropathic pain correlates with worsening cognition in people with human immunodeficiency virus. | Ronald J Ellis, Ned Sacktor, David B Clifford, Christina M Marra, Ann C Collier, Benjamin Gelman, Jessica Robinson-Papp, Scott L Letendre, Robert K Heaton, | Brain : A Journal Of Neurology | 2021-04-14 |
| Functional landscape of SARS-CoV-2 cellular restriction. | Laura Martin-Sancho, Mary K Lewinski, Lars Pache, Charlotte A Stoneham, Xin Yin, Mark E Becker, Dexter Pratt, Christopher Churas, Sara B Rosenthal, Sophie Liu, Stuart Weston, Paul D De Jesus, Alan M O'Neill, Anshu P Gounder, Courtney Nguyen, Yuan Pu, Heather M Curry, Aaron L Oom, Lisa Miorin, Ariel Rodriguez-Frandsen, Fan Zheng, Chunxiang Wu, Yong Xiong, Matthew Urbanowski, Megan L Shaw, Max W Chang, Christopher Benner, Thomas J Hope, Matthew B Frieman, Adolfo García-Sastre, Trey Ideker, Judd F Hultquist, John Guatelli, Sumit K Chanda | Molecular Cell | 2021-04-13 |
| Persistent Joint Pain Following Arthropod Virus Infections. | Karol Suchowiecki, St Patrick Reid, Gary L Simon, Gary S Firestein, Aileen Chang | Current Rheumatology Reports | 2021-04-13 |
| MrHAMER yields highly accurate single molecule viral sequences enabling analysis of intra-host evolution. | Christian M Gallardo, Shiyi Wang, Daniel J Montiel-Garcia, Susan J Little, Davey M Smith, Andrew L Routh, Bruce E Torbett | Nucleic Acids Research | 2021-04-13 |
| Structural Characterization of a Minimal Antibody against Human APOBEC3B. | Heng Tang, Özlem Demir, Fredy Kurniawan, William L Brown, Ke Shi, Nicholas H Moeller, Michael A Carpenter, Christopher Belica, Kayo Orellana, Guocheng Du, Aaron M LeBeau, Rommie E Amaro, Reuben S Harris, Hideki Aihara | Viruses | 2021-04-12 |
| Marinoterpins A-C: Rare Linear Merosesterterpenoids from Marine-Derived Actinomycete Bacteria of the Family Streptomycetaceae. | Min Cheol Kim, Jaclyn M Winter, Ratnakar N Asolkar, Chollaratt Boonlarppradab, Reiko Cullum, William Fenical | The Journal Of Organic Chemistry | 2021-04-12 |
| Genetic suppression of lethal mutations in fatty acid biosynthesis mediated by a secondary lipid synthase. | Marco N Allemann, Eric E Allen | Applied And Environmental Microbiology | 2021-04-09 |
| Influence of Intermittent Hypoxia/Hypercapnia on Atherosclerosis, Gut Microbiome, and Metabolome. | Jin Xue, Celeste Allaband, Dan Zhou, Orit Poulsen, Cameron Martino, Lingjing Jiang, Anupriya Tripathi, Emmanuel Elijah, Pieter C Dorrestein, Rob Knight, Amir Zarrinpar, Gabriel G Haddad | Frontiers In Physiology | 2021-04-08 |
| Children with Autism and Their Typically Developing Siblings Differ in Amplicon Sequence Variants and Predicted Functions of Stool-Associated Microbes. | Maude M David, Christine Tataru, Jena Daniels, Jessey Schwartz, Jessica Keating, Jarrad Hampton-Marcell, Neil Gottel, Jack A Gilbert, Dennis P Wall | MSystems | 2021-04-06 |
| Structure and dynamics of SARS-CoV-2 proofreading exoribonuclease ExoN. | Nicholas H Moeller, Ke Shi, Özlem Demir, Surajit Banerjee, Lulu Yin, Christopher Belica, Cameron Durfee, Rommie E Amaro, Hideki Aihara | BioRxiv : The Preprint Server For Biology | 2021-04-04 |
| Comparison of two nucleic acid amplification tests (NAATs) and two antigen tests for detection of SARS-CoV-2 from upper respiratory specimens. | Peiting Kuo, Susan Realegeno, David T Pride | Journal Of Clinical Virology Plus | 2021-04-03 |
| Differential T cell reactivity to endemic coronaviruses and SARS-CoV-2 in community and health care workers. | Ricardo da Silva Antunes, Suresh Pallikkuth, Erin Williams, Dawen Yu Esther, Jose Mateus, Lorenzo Quiambao, Eric Wang, Stephen A Rawlings, Daniel Stadlbauer, Kaijun Jiang, Fatima Amanat, David Arnold, David Andrews, Irma Fuego, Jennifer M Dan, Alba Grifoni, Daniela Weiskopf, Florian Krammer, Shane Crotty, Michael E Hoffer, Savita G Pahwa, Alessandro Sette | The Journal Of Infectious Diseases | 2021-04-02 |
| Targeting Biofilm of MDR by Phages Using a Catheter Model. | Chani Rakov, Shira Ben Porat, Sivan Alkalay-Oren, Ortal Yerushalmy, Mohanad Abdalrhman, Niv Gronovich, Lina Huang, David Pride, Shunit Coppenhagen-Glazer, Ran Nir-Paz, Ronen Hazan | Antibiotics (Basel, Switzerland) | 2021-04-02 |
| An Introduction to Next Generation Sequencing Bioinformatic Analysis in Gut Microbiome Studies. | Bei Gao, Liang Chi, Yixin Zhu, Xiaochun Shi, Pengcheng Tu, Bing Li, Jun Yin, Nan Gao, Weishou Shen, Bernd Schnabl | Biomolecules | 2021-04-02 |
| A Clinical-Stage Cysteine Protease Inhibitor blocks SARS-CoV-2 Infection of Human and Monkey Cells. | Drake M Mellott, Chien-Te Tseng, Aleksandra Drelich, Pavla Fajtová, Bala C Chenna, Demetrios H Kostomiris, Jason Hsu, Jiyun Zhu, Zane W Taylor, Klaudia I Kocurek, Vivian Tat, Ardala Katzfuss, Linfeng Li, Miriam A Giardini, Danielle Skinner, Ken Hirata, Michael C Yoon, Sungjun Beck, Aaron F Carlin, Alex E Clark, Laura Beretta, Daniel Maneval, Vivian Hook, Felix Frueh, Brett L Hurst, Hong Wang, Frank M Raushel, Anthony J O'Donoghue, Jair Lage de Siqueira-Neto, Thomas D Meek, James H McKerrow | ACS Chemical Biology | 2021-03-31 |
| Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States. | Nicole L Washington, Karthik Gangavarapu, Mark Zeller, Alexandre Bolze, Elizabeth T Cirulli, Kelly M Schiabor Barrett, Brendan B Larsen, Catelyn Anderson, Simon White, Tyler Cassens, Sharoni Jacobs, Geraint Levan, Jason Nguyen, Jimmy M Ramirez, Charlotte Rivera-Garcia, Efren Sandoval, Xueqing Wang, David Wong, Emily Spencer, Refugio Robles-Sikisaka, Ezra Kurzban, Laura D Hughes, Xianding Deng, Candace Wang, Venice Servellita, Holly Valentine, Peter De Hoff, Phoebe Seaver, Shashank Sathe, Kimberly Gietzen, Brad Sickler, Jay Antico, Kelly Hoon, Jingtao Liu, Aaron Harding, Omid Bakhtar, Tracy Basler, Brett Austin, Duncan MacCannell, Magnus Isaksson, Phillip G Febbo, David Becker, Marc Laurent, Eric McDonald, Gene W Yeo, Rob Knight, Louise C Laurent, Eileen de Feo, Michael Worobey, Charles Y Chiu, Marc A Suchard, James T Lu, William Lee, Kristian G Andersen | Cell | 2021-03-30 |
| Thousands of previously unknown phages discovered in whole-community human gut metagenomes. | Sean Benler, Natalya Yutin, Dmitry Antipov, Mikhail Rayko, Sergey Shmakov, Ayal B Gussow, Pavel Pevzner, Eugene V Koonin | Microbiome | 2021-03-29 |
| Outpatient Treatment of Severe Acute Respiratory Syndrome Coronavirus 2 Infection to Prevent Coronavirus Disease 2019 Progression. | Myron S Cohen, David A Wohl, William A Fischer, Davey M Smith, Joseph J Eron | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-03-28 |
| Effects of processed meat and drinking water nitrate on oral and fecal microbial populations in a controlled feeding study. | Rashmi Sinha, Ni Zhao, James J Goedert, Doratha A Byrd, Yunhu Wan, Xing Hua, Autumn G Hullings, Rob Knight, Simone van Breda, Karen Mathijs, Theo M de Kok, Mary H Ward, | Environmental Research | 2021-03-27 |
| The oncogene AAMDC links PI3K-AKT-mTOR signaling with metabolic reprograming in estrogen receptor-positive breast cancer. | Emily Golden, Rabab Rashwan, Eleanor A Woodward, Agustin Sgro, Edina Wang, Anabel Sorolla, Charlene Waryah, Wan Jun Tie, Elisabet Cuyàs, Magdalena Ratajska, Iwona Kardaś, Piotr Kozlowski, Elizabeth K M Johnstone, Heng B See, Ciara Duffy, Jeremy Parry, Kim A Lagerborg, Piotr Czapiewski, Javier A Menendez, Adam Gorczyński, Bartosz Wasag, Kevin D G Pfleger, Christina Curtis, Bum-Kyu Lee, Jonghwan Kim, Joseph Cursons, Nathan J Pavlos, Wojciech Biernat, Mohit Jain, Andrew J Woo, Andrew Redfern, Pilar Blancafort | Nature Communications | 2021-03-26 |
| The microbiome and human cancer. | Gregory D Sepich-Poore, Laurence Zitvogel, Ravid Straussman, Jeff Hasty, Jennifer A Wargo, Rob Knight | Science (New York, N.Y.) | 2021-03-26 |
| Reversible -Acetyl Migration within the Sialic Acid Side Chain and Its Influence on Protein Recognition. | Yang Ji, Aniruddha Sasmal, Wanqing Li, Lisa Oh, Saurabh Srivastava, Audra A Hargett, Brian R Wasik, Hai Yu, Sandra Diaz, Biswa Choudhury, Colin R Parrish, Darón I Freedberg, Lee-Ping Wang, Ajit Varki, Xi Chen | ACS Chemical Biology | 2021-03-26 |
| Validity of 2020 vancomycin consensus recommendations and further guidance for practical application. | Michael J Rybak, Jennifer Le, Thomas P Lodise, Donald P Levine, John S Bradley, Catherine Liu, Bruce A Mueller, Manjunath P Pai, Annie-Wong Beringer, Keith A Rodvold, Holly D Maples | American Journal Of Health-system Pharmacy : AJHP : Official Journal Of The American Society Of Health-System Pharmacists | 2021-03-26 |
| Comparison of Two Approaches for the Metataxonomic Analysis of the Human Milk Microbiome. | Lorena Ruiz, Claudio Alba, Cristina García-Carral, Esther A Jiménez, Kimberly A Lackey, Michelle K McGuire, Courtney L Meehan, James Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, Debela Gindola K, Gloria E Otoo, Rossina G Pareja, Lars Bode, Mark A McGuire, Janet E Williams, Juan M Rodríguez | Frontiers In Cellular And Infection Microbiology | 2021-03-25 |
| Association of Loneliness and Wisdom With Gut Microbial Diversity and Composition: An Exploratory Study. | Tanya T Nguyen, Xinlian Zhang, Tsung-Chin Wu, Jinyuan Liu, Collin Le, Xin M Tu, Rob Knight, Dilip V Jeste | Frontiers In Psychiatry | 2021-03-25 |
| Tandem Fluorescence Measurements of Organic Matter and Bacteria Released in Sea Spray Aerosols. | Mitchell V Santander, Brock A Mitts, Matthew A Pendergraft, Julie Dinasquet, Christopher Lee, Alexia N Moore, Lucia B Cancelada, Ke'La A Kimble, Francesca Malfatti, Kimberly A Prather | Environmental Science & Technology | 2021-03-23 |
| Renal and non-renal response of ABC and SLC transporters in chronic kidney disease. | Adriana M Torres, Ankur V Dnyanmote, Jeffry C Granados, Sanjay K Nigam | Expert Opinion On Drug Metabolism & Toxicology | 2021-03-22 |
| Coordinate regulation of systemic and kidney tryptophan metabolism by the drug transporters OAT1 and OAT3. | Jeffry C Granados, Anne Richelle, Jahir M Gutierrez, Patrick Zhang, Xinlian Zhang, Vibha Bhatnagar, Nathan E Lewis, Sanjay K Nigam | The Journal Of Biological Chemistry | 2021-03-21 |
| Driving to Safety: CRISPR-Based Genetic Approaches to Reducing Antibiotic Resistance. | Ethan Bier, Victor Nizet | Trends In Genetics : TIG | 2021-03-18 |
| Author Correction: Gut microbiome pattern reflects healthy ageing and predicts survival in humans. | Tomasz Wilmanski, Christian Diener, Noa Rappaport, Sushmita Patwardhan, Jack Wiedrick, Jodi Lapidus, John C Earls, Anat Zimmer, Gustavo Glusman, Max Robinson, James T Yurkovich, Deborah M Kado, Jane A Cauley, Joseph Zmuda, Nancy E Lane, Andrew T Magis, Jennifer C Lovejoy, Leroy Hood, Sean M Gibbons, Eric S Orwoll, Nathan D Price | Nature Metabolism | 2021-03-18 |
| Current Paradigms of Combination Therapy in Methicillin-Resistant Staphylococcus aureus (MRSA) Bacteremia: Does it Work, Which Combination, and For Which Patients? | Warren Rose, Michael Fantl, Matthew Geriak, Victor Nizet, George Sakoulas | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-03-16 |
| EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets. | Kalen Cantrell, Marcus W Fedarko, Gibraan Rahman, Daniel McDonald, Yimeng Yang, Thant Zaw, Antonio Gonzalez, Stefan Janssen, Mehrbod Estaki, Niina Haiminen, Kristen L Beck, Qiyun Zhu, Erfan Sayyari, James T Morton, George Armstrong, Anupriya Tripathi, Julia M Gauglitz, Clarisse Marotz, Nathaniel L Matteson, Cameron Martino, Jon G Sanders, Anna Paola Carrieri, Se Jin Song, Austin D Swafford, Pieter C Dorrestein, Kristian G Andersen, Laxmi Parida, Ho-Cheol Kim, Yoshiki Vázquez-Baeza, Rob Knight | MSystems | 2021-03-16 |
| A Cyanobacterial Component Required for Pilus Biogenesis Affects the Exoproteome. | Yevgeni Yegorov, Eleonora Sendersky, Shaul Zilberman, Elad Nagar, Hiba Waldman Ben-Asher, Eyal Shimoni, Ryan Simkovsky, Susan S Golden, Andy LiWang, Rakefet Schwarz | MBio | 2021-03-16 |
| SARS-CoV-2 Screening Among Symptom-Free Healthcare Workers. | Ryan T Demmer, Angela K Ulrich, Talia D Wiggen, Ali Strickland, Brianna M Naumchik, Shalini Kulasingam, Steven D Stovitz, Clarisse Marotz, Pedro Belda-Ferre, Greg Humphrey, Peter De Hoff, Louise Laurent, Susan Kline, Rob Knight | Infection Control And Hospital Epidemiology | 2021-03-12 |
| An 11-Year-old Male With X-linked Agammaglobulinemia and Persistent Abdominal Pain. | Natalie B Fettinger, John S Bradley, Nanda Ramchandar | The Pediatric Infectious Disease Journal | 2021-03-12 |
| Pharmacokinetics and Safety of Single-dose Tedizolid Phosphate in Children 2 to <12 Years of Age. | Antonio C Arrieta, Jocelyn Y Ang, Claudia Espinosa, Oleksandr Fofanov, Camilla Tøndel, Margaret Z Chou, Carisa S De Anda, Jason Y Kim, Dan Li, Philip Sabato, Pamela S Sears, John S Bradley | The Pediatric Infectious Disease Journal | 2021-03-12 |
| COVID-19 and older adults with bipolar disorder: Problems and solutions. | Osvaldo P Almeida, Esther Jimenez, Soham Rej, Lisa Eyler, Martha Sajatovic, Annemiek Dols | Bipolar Disorders | 2021-03-12 |
| Derlin rhomboid pseudoproteases employ substrate engagement and lipid distortion to enable the retrotranslocation of ERAD membrane substrates. | Anahita Nejatfard, Nicholas Wauer, Satarupa Bhaduri, Adam Conn, Saroj Gourkanti, Narinderbir Singh, Tiffany Kuo, Rachel Kandel, Rommie E Amaro, Sonya E Neal | Cell Reports | 2021-03-12 |
| Cardiac Rehab in the COVID Era and Beyond: mHealth and Other Novel Opportunities. | Elizabeth Epstein, Neeja Patel, Kathryn Maysent, Pam R Taub | Current Cardiology Reports | 2021-03-11 |
| Dietary factors, gut microbiota, and serum trimethylamine-N-oxide associated with cardiovascular disease in the Hispanic Community Health Study/Study of Latinos. | Zhendong Mei, Guo-Chong Chen, Zheng Wang, Mykhaylo Usyk, Bing Yu, Yoshiki Vazquez Baeza, Greg Humphrey, Rodolfo Salido Benitez, Jun Li, Jessica S Williams-Nguyen, Martha L Daviglus, Lifang Hou, Jianwen Cai, Yan Zheng, Rob Knight, Robert D Burk, Eric Boerwinkle, Robert C Kaplan, Qibin Qi | The American Journal Of Clinical Nutrition | 2021-03-11 |
| Conjugation to Enterobactin and Salmochelin S4 Enhances the Antimicrobial Activity and Selectivity of β-Lactam Antibiotics against Nontyphoidal . | Artur Sargun, Martina Sassone-Corsi, Tengfei Zheng, Manuela Raffatellu, Elizabeth M Nolan | ACS Infectious Diseases | 2021-03-10 |
| Time to Viral Rebound After Interruption of Modern Antiretroviral Therapies. | Jonathan Z Li, Evgenia Aga, Ronald J Bosch, Mark Pilkinton, Eugène Kroon, Lynsay MacLaren, Michael Keefer, Lawrence Fox, Liz Barr, Edward Acosta, Jintanat Ananworanich, Robert Coombs, John W Mellors, Alan L Landay, Bernard Macatangay, Steven Deeks, Rajesh T Gandhi, Davey M Smith | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-03-09 |
| Exploring the Composition and Functions of Plastic Microbiome Using Whole-Genome Sequencing. | Geetika Bhagwat, Qiyun Zhu, Wayne O'Connor, Suresh Subashchandrabose, Ian Grainge, Rob Knight, Thava Palanisami | Environmental Science & Technology | 2021-03-09 |
| Staphylococcus aureus Enters Hair Follicles Using Triacylglycerol Lipases Preserved through the Genus Staphylococcus. | Kouki Nakamura, Michael R Williams, Jakub M Kwiecinski, Alexander R Horswill, Richard L Gallo | The Journal Of Investigative Dermatology | 2021-03-09 |
| Increased Peripheral Blood Neutrophil Activation Phenotypes and Neutrophil Extracellular Trap Formation in Critically Ill Coronavirus Disease 2019 (COVID-19) Patients: A Case Series and Review of the Literature. | Jorge A Masso-Silva, Alexander Moshensky, Michael T Y Lam, Mazen F Odish, Arjun Patel, Le Xu, Emily Hansen, Samantha Trescott, Celina Nguyen, Roy Kim, Katherine Perofsky, Samantha Perera, Lauren Ma, Josephine Pham, Mark Rolfsen, Jarod Olay, John Shin, Jennifer M Dan, Robert K Abbott, Sydney Ramirez, Thomas H Alexander, Grace Y Lin, Ana Lucia Fuentes, Ira Advani, Deepti Gunge, Victor Pretorius, Atul Malhotra, Xin Sun, Jason Duran, Mark Hepokoski, Shane Crotty, Nicole G Coufal, Angela Meier, Laura E Crotty Alexander | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-03-05 |
| Disease-related mutations in PI3Kγ disrupt regulatory C-terminal dynamics and reveal a path to selective inhibitors. | Manoj K Rathinaswamy, Zied Gaieb, Kaelin D Fleming, Chiara Borsari, Noah J Harris, Brandon E Moeller, Matthias P Wymann, Rommie E Amaro, John E Burke | ELife | 2021-03-04 |
| Proton pump inhibitor use status does not modify the microbiome signature for cirrhosis. | Tae Gyu Oh, Susy M Kim, Annette R Atkins, Ruth T Yu, Michael Downes, Ronald M Evans, Rohit Loomba | Cell Metabolism | 2021-03-03 |
| High-Throughput Wastewater SARS-CoV-2 Detection Enables Forecasting of Community Infection Dynamics in San Diego County. | Smruthi Karthikeyan, Nancy Ronquillo, Pedro Belda-Ferre, Destiny Alvarado, Tara Javidi, Christopher A Longhurst, Rob Knight | MSystems | 2021-03-02 |
| Links between gut microbiome composition and fatty liver disease in a large population sample. | Matti O Ruuskanen, Fredrik Åberg, Ville Männistö, Aki S Havulinna, Guillaume Méric, Yang Liu, Rohit Loomba, Yoshiki Vázquez-Baeza, Anupriya Tripathi, Liisa M Valsta, Michael Inouye, Pekka Jousilahti, Veikko Salomaa, Mohit Jain, Rob Knight, Leo Lahti, Teemu J Niiranen | Gut Microbes | 2021-03-02 |
| Gut microbiota dysbiosis is associated with worse emotional states in HIV infection. | Josué Pérez-Santiago, María J Marquine, Debralee Cookson, Rafael Giraud-Colón, Robert K Heaton, Igor Grant, Ronald J Ellis, Scott L Letendre, Scott N Peterson | Journal Of Neurovirology | 2021-03-02 |
| Bcl6-Mediated Transcriptional Regulation of Follicular Helper T cells (T). | Jinyong Choi, Shane Crotty | Trends In Immunology | 2021-03-01 |
| Highly mutated antibodies capable of neutralizing N276 glycan-deficient HIV after a single immunization with an Env trimer. | Jeong Hyun Lee, Catherine Nakao, Michael Appel, Amber Le, Elise Landais, Oleksandr Kalyuzhniy, Xiaozhen Hu, Alessia Liguori, Tina-Marie Mullen, Bettina Groschel, Robert K Abbott, Devin Sok, William R Schief, Shane Crotty | Cell Reports | 2021-02-28 |
| Spatial variability of prokaryotic and viral abundances in the Kermadec and Atacama Trench regions. | Clemens Schauberger, Mathias Middelboe, Morten Larsen, Logan M Peoples, Douglas H Bartlett, Finn Kirpekar, Ashley A Rowden, Frank Wenzhöfer, Bo Thamdrup, Ronnie N Glud | Limnology And Oceanography | 2021-02-28 |
| Dissociation of DNA damage sensing by endoglycosidase HPSE. | Alex Agelidis, Rahul K Suryawanshi, Chandrashekhar D Patil, Anaamika Campeau, David J Gonzalez, Deepak Shukla | IScience | 2021-02-27 |
| Hitting the diagnostic sweet spot: Point-of-care SARS-CoV-2 salivary antigen testing with an off-the-shelf glucometer. | Naveen K Singh, Partha Ray, Aaron F Carlin, Celestine Magallanes, Sydney C Morgan, Louise C Laurent, Eliah S Aronoff-Spencer, Drew A Hall | Biosensors & Bioelectronics | 2021-02-26 |
| Associations of fecal microbial profiles with breast cancer and nonmalignant breast disease in the Ghana Breast Health Study. | Doratha A Byrd, Emily Vogtmann, Zeni Wu, Yongli Han, Yunhu Wan, Joe-Nat Clegg-Lamptey, Joel Yarney, Beatrice Wiafe-Addai, Seth Wiafe, Baffour Awuah, Daniel Ansong, Kofi Nyarko, Autumn G Hullings, Xing Hua, Thomas Ahearn, James J Goedert, Jianxin Shi, Rob Knight, Jonine D Figueroa, Louise A Brinton, Montserrat Garcia-Closas, Rashmi Sinha | International Journal Of Cancer | 2021-02-26 |
| Identification of an N-acetylneuraminic acid-presenting bacteria isolated from a human microbiome. | Zhen Han, Peter S Thuy-Boun, Wayne Pfeiffer, Vincent F Vartabedian, Ali Torkamani, John R Teijaro, Dennis W Wolan | Scientific Reports | 2021-02-26 |
| The Molecular Basis for Life in Extreme Environments. | Nozomi Ando, Blanca Barquera, Douglas H Bartlett, Eric Boyd, Audrey A Burnim, Amanda S Byer, Daniel Colman, Richard E Gillilan, Martin Gruebele, George Makhatadze, Catherine A Royer, Everett Shock, A Joshua Wand, Maxwell B Watkins | Annual Review Of Biophysics | 2021-02-26 |
| Genomic relatedness and clinical significance of strains isolated from the urogenital tract of sexual partners. | Carine R Mores, Travis K Price, Birte Wolff, Thomas Halverson, Roberto Limeira, Linda Brubaker, Elizabeth R Mueller, Catherine Putonti, Alan J Wolfe | Microbial Genomics | 2021-02-25 |
| Searching for host immune-microbiome mechanisms in obsessive-compulsive disorder: A narrative literature review and future directions. | Emily A Troyer, Jordan N Kohn, Gertrude Ecklu-Mensah, Gajender Aleti, David R Rosenberg, Suzi Hong | Neuroscience And Biobehavioral Reviews | 2021-02-24 |
| The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection. | Fatemeh Askarian, Satoshi Uchiyama, Helen Masson, Henrik Vinther Sørensen, Ole Golten, Anne Cathrine Bunæs, Sophanit Mekasha, Åsmund Kjendseth Røhr, Eirik Kommedal, Judith Anita Ludviksen, Magnus Ø Arntzen, Benjamin Schmidt, Raymond H Zurich, Nina M van Sorge, Vincent G H Eijsink, Ute Krengel, Tom Eirik Mollnes, Nathan E Lewis, Victor Nizet, Gustav Vaaje-Kolstad | Nature Communications | 2021-02-23 |
| Intestinal α1-2-Fucosylation Contributes to Obesity and Steatohepatitis in Mice. | Rongrong Zhou, Cristina Llorente, Jinling Cao, Livia S Zaramela, Suling Zeng, Bei Gao, Shang-Zhen Li, Ryan D Welch, Feng-Qing Huang, Lian-Wen Qi, Chuyue Pan, Yan Huang, Pengchen Zhou, Iris Beussen, Ying Zhang, Gregory Bryam, Oliver Fiehn, Lirui Wang, E-Hu Liu, Ruth T Yu, Michael Downes, Ronald M Evans, Karrie Goglin, Derrick E Fouts, David A Brenner, Lars Bode, Xuegong Fan, Karsten Zengler, Bernd Schnabl | Cellular And Molecular Gastroenterology And Hepatology | 2021-02-22 |
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| Quantifying Live Microbial Load in Human Saliva Samples over Time Reveals Stable Composition and Dynamic Load. | Clarisse Marotz, James T Morton, Perris Navarro, Joanna Coker, Pedro Belda-Ferre, Rob Knight, Karsten Zengler | MSystems | 2021-02-16 |
| Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus. | St Elmo Wilken, Jonathan M Monk, Patrick A Leggieri, Christopher E Lawson, Thomas S Lankiewicz, Susanna Seppälä, Chris G Daum, Jerry Jenkins, Anna M Lipzen, Stephen J Mondo, Kerrie W Barry, Igor V Grigoriev, John K Henske, Michael K Theodorou, Bernhard O Palsson, Linda R Petzold, Michelle A O'Malley | MSystems | 2021-02-16 |
| Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features. | Natalya Yutin, Sean Benler, Sergei A Shmakov, Yuri I Wolf, Igor Tolstoy, Mike Rayko, Dmitry Antipov, Pavel A Pevzner, Eugene V Koonin | Nature Communications | 2021-02-16 |
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| Multipathogen Analysis of IgA and IgG Antigen Specificity for Selected Pathogens in Milk Produced by Women From Diverse Geographical Regions: The INSPIRE Study. | Michelle K McGuire, Arlo Z Randall, Antti E Seppo, Kirsi M Järvinen, Courtney L Meehan, Debela Gindola, Janet E Williams, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, James A Foster, Gloria E Otoo, Juan M Rodríguez, Rossina G Pareja, Lars Bode, Mark A McGuire, Joseph J Campo | Frontiers In Immunology | 2021-02-11 |
| Paresthesia Predicts Increased Risk of Distal Neuropathic Pain in Older People with HIV-Associated Sensory Polyneuropathy. | Monica M Diaz, John R Keltner, Alan N Simmons, Donald Franklin, Raeanne C Moore, David Clifford, Ann C Collier, Benjamin B Gelman, Ph D Christina Marra, J Allen McCutchan, Susan Morgello, Ned Sacktor, Brookie Best, Christine Fennema Notestine, Sara Gianella Weibel, Igor Grant, Thomas D Marcotte, Florin Vaida, Scott Letendre, Robert Heaton, Ronald J Ellis | Pain Medicine (Malden, Mass.) | 2021-02-11 |
| Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly. | Mahul Chakraborty, Arunachalam Ramaiah, Adriana Adolfi, Paige Halas, Bhagyashree Kaduskar, Luna Thanh Ngo, Suvratha Jayaprasad, Kiran Paul, Saurabh Whadgar, Subhashini Srinivasan, Suresh Subramani, Ethan Bier, Anthony A James, J J Emerson | BMC Biology | 2021-02-10 |
| Higher Comorbidity Burden Predicts Worsening Neurocognitive Trajectories in People with Human Immunodeficiency Virus. | Ronald J Ellis, Emily Paolillo, Rowan Saloner, Robert K Heaton | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-02-10 |
| IonoBiology: The functional dynamics of the intracellular metallome, with lessons from bacteria. | Leticia Galera-Laporta, Colin J Comerci, Jordi Garcia-Ojalvo, Gürol M Süel | Cell Systems | 2021-02-10 |
| Human Milk-Fed Piglets Have a Distinct Small Intestine and Circulatory Metabolome Profile Relative to That of Milk Formula-Fed Piglets. | Fernanda Rosa, Katelin S Matazel, Ahmed A Elolimy, Sean H Adams, Anne Bowlin, Keith D Williams, Lars Bode, Laxmi Yeruva | MSystems | 2021-02-09 |
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| Metabolic differentiation and intercellular nurturing underpin bacterial endospore formation. | Eammon P Riley, Javier Lopez-Garrido, Joseph Sugie, Roland B Liu, Kit Pogliano | Science Advances | 2021-01-22 |
| Obesogenic Programming Effects during Lactation: A Narrative Review and Conceptual Model Focusing on Underlying Mechanisms and Promising Future Research Avenues. | Junilla K Larsen, Lars Bode | Nutrients | 2021-01-21 |
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| Functional genomics and metabolomics advance the ethnobotany of the Samoan traditional medicine "matalafi". | Seeseei Molimau-Samasoni, Victoria Helen Woolner, Su'emalo Talie Foliga, Katharina Robichon, Vimal Patel, Sarah K Andreassend, Jeffrey P Sheridan, Tama Te Kawa, David Gresham, Darach Miller, Daniel J Sinclair, Anne C La Flamme, Alexey V Melnik, Allegra Aron, Pieter C Dorrestein, Paul H Atkinson, Robert A Keyzers, Andrew B Munkacsi | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-01-19 |
| Exploring the Impact of Ketodeoxynonulosonic Acid in Host-Pathogen Interactions Using Uptake and Surface Display by Nontypeable Haemophilus influenzae. | Sudeshna Saha, Alison Coady, Aniruddha Sasmal, Kunio Kawanishi, Biswa Choudhury, Hai Yu, Ricardo U Sorensen, Jaime Inostroza, Ian C Schoenhofen, Xi Chen, Anja Münster-Kühnel, Chihiro Sato, Ken Kitajima, Sanjay Ram, Victor Nizet, Ajit Varki | MBio | 2021-01-19 |
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| Airborne Transmission of SARS-CoV-2: What We Know. | Jonathan M Samet, Kimberly Prather, Georges Benjamin, Seema Lakdawala, John-Martin Lowe, Arthur Reingold, John Volckens, Linsey Marr | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-01-18 |
| Microbiome Signatures in a Fast- and Slow-Progressing Gastric Cancer Murine Model and Their Contribution to Gastric Carcinogenesis. | Prerna Bali, Joanna Coker, Ivonne Lozano-Pope, Karsten Zengler, Marygorret Obonyo | Microorganisms | 2021-01-17 |
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| New Developments in Microbiome in Alcohol-Associated and Nonalcoholic Fatty Liver Disease. | Phillipp Hartmann, Bernd Schnabl | Seminars In Liver Disease | 2021-01-14 |
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| A Novel N4-Like Bacteriophage Isolated from a Wastewater Source in South India with Activity against Several Multidrug-Resistant Clinical Pseudomonas aeruginosa Isolates. | Nitasha D Menon, Megha S Kumar, T G Satheesh Babu, Sucharita Bose, Gayathri Vijayakumar, Manasi Baswe, Meghna Chatterjee, Jovita Rowena D'Silva, Kavya Shetty, Jayalekshmi Haripriyan, Anil Kumar, Samitha Nair, Priyanka Somanath, Bipin G Nair, Victor Nizet, Geetha B Kumar | MSphere | 2021-01-13 |
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| Skin inflammation activates intestinal stromal fibroblasts and promotes colitis. | Tatsuya Dokoshi, Jason S Seidman, Kellen J Cavagnero, Fengwu Li, Marc C Liggins, Bryn C Taylor, Jocelyn Olvera, Rob Knight, John T Chang, Nita H Salzman, Richard L Gallo | The Journal Of Clinical Investigation | 2021-01-12 |
| Viral speciation through subcellular genetic isolation and virogenesis incompatibility. | Vorrapon Chaikeeratisak, Erica A Birkholz, Amy M Prichard, MacKennon E Egan, Avani Mylvara, Poochit Nonejuie, Katrina T Nguyen, Joseph Sugie, Justin R Meyer, Joe Pogliano | Nature Communications | 2021-01-12 |
| Exposure to Epstein Barr virus and cognitive functioning in individuals with schizophrenia. | Faith Dickerson, Emily Katsafanas, Andrea Origoni, Amalia Squire, Sunil Khushalani, Theresa Newman, Kelly Rowe, Cassie Stallings, Christina L G Savage, Kevin Sweeney, Tanya T Nguyen, Alan Breier, Donald Goff, Glen Ford, Lorraine Jones-Brando, Robert Yolken | Schizophrenia Research | 2021-01-12 |
| Ticagrelor Increases Platelet-Mediated Staphylococcus aureus Killing, Resulting in Clearance of Bacteremia. | Erlinda R Ulloa, Satoshi Uchiyama, Robert Gillespie, Victor Nizet, George Sakoulas | The Journal Of Infectious Diseases | 2021-01-11 |
| High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing. | Søren M Karst, Ryan M Ziels, Rasmus H Kirkegaard, Emil A Sørensen, Daniel McDonald, Qiyun Zhu, Rob Knight, Mads Albertsen | Nature Methods | 2021-01-11 |
| Gut Microbial Ecosystem in Parkinson Disease: New Clinicobiological Insights from Multi-Omics. | Ai Huey Tan, Chun Wie Chong, Shen-Yang Lim, Ivan Kok Seng Yap, Cindy Shuan Ju Teh, Mun Fai Loke, Sze-Looi Song, Jiun Yan Tan, Ban Hong Ang, Yong Qi Tan, Mee Teck Kho, Jeff Bowman, Sanjiv Mahadeva, Hoi Sen Yong, Anthony E Lang | Annals Of Neurology | 2021-01-11 |
| HiDeF: identifying persistent structures in multiscale 'omics data. | Fan Zheng, She Zhang, Christopher Churas, Dexter Pratt, Ivet Bahar, Trey Ideker | Genome Biology | 2021-01-07 |
| Immunological memory to SARS-CoV-2 assessed for up to 8 months after infection. | Jennifer M Dan, Jose Mateus, Yu Kato, Kathryn M Hastie, Esther Dawen Yu, Caterina E Faliti, Alba Grifoni, Sydney I Ramirez, Sonya Haupt, April Frazier, Catherine Nakao, Vamseedhar Rayaprolu, Stephen A Rawlings, Bjoern Peters, Florian Krammer, Viviana Simon, Erica Ollmann Saphire, Davey M Smith, Daniela Weiskopf, Alessandro Sette, Shane Crotty | Science (New York, N.Y.) | 2021-01-06 |
| Chronically elevated depressive symptoms interact with acute increases in inflammation to predict worse neurocognition among people with HIV. | Rowan Saloner, Emily W Paolillo, Robert K Heaton, David J Grelotti, Murray B Stein, Andrew H Miller, J Hampton Atkinson, Scott L Letendre, Ronald J Ellis, Igor Grant, Jennifer E Iudicello, David J Moore | Journal Of Neurovirology | 2021-01-06 |
| A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria. | Tiago Leão, Mingxun Wang, Nathan Moss, Ricardo da Silva, Jon Sanders, Sergey Nurk, Alexey Gurevich, Gregory Humphrey, Raphael Reher, Qiyun Zhu, Pedro Belda-Ferre, Evgenia Glukhov, Syrena Whitner, Kelsey L Alexander, Robert Rex, Pavel Pevzner, Pieter C Dorrestein, Rob Knight, Nuno Bandeira, William H Gerwick, Lena Gerwick | Marine Drugs | 2021-01-06 |
| Systems and synthetic biology to elucidate secondary metabolite biosynthetic gene clusters encoded in genomes. | Namil Lee, Soonkyu Hwang, Woori Kim, Yongjae Lee, Ji Hun Kim, Suhyung Cho, Hyun Uk Kim, Yeo Joon Yoon, Min-Kyu Oh, Bernhard O Palsson, Byung-Kwan Cho | Natural Product Reports | 2021-01-05 |
| Effects of Immunization With the Soil-Derived Bacterium on Stress Coping Behaviors and Cognitive Performance in a "Two Hit" Stressor Model. | Christine L Foxx, Jared D Heinze, Antonio González, Fernando Vargas, Michael V Baratta, Ahmed I Elsayed, Jessica R Stewart, Kelsey M Loupy, Mathew R Arnold, M C Flux, Saydie A Sago, Philip H Siebler, Lauren N Milton, Margaret W Lieb, James E Hassell, David G Smith, Kyo A K Lee, Sandra A Appiah, Evan J Schaefer, Morgan Panitchpakdi, Nicole C Sikora, Kelly C Weldon, Christopher E Stamper, Dominic Schmidt, David A Duggan, Yosan M Mengesha, Mikale Ogbaselassie, Kadi T Nguyen, Chloe A Gates, K'loni Schnabel, Linh Tran, Joslynn D Jones, Martha H Vitaterna, Fred W Turek, Monika Fleshner, Pieter C Dorrestein, Rob Knight, Kenneth P Wright, Christopher A Lowry | Frontiers In Physiology | 2021-01-05 |
| Microbiome for Mars: surveying microbiome connections to healthcare with implications for long-duration human spaceflight, virtual workshop, July 13, 2020. | Michael LaPelusa, Dorit Donoviel, Sergio E Branzini, Paul E Carlson, Stephanie Culler, Amrita K Cheema, Rima Kaddurah-Daouk, Denise Kelly, Isabelle de Cremoux, Rob Knight, Rosa Krajmalnik-Brown, Stephen L Mayo, Sarkis K Mazmanian, Emeran A Mayer, Joseph F Petrosino, Keith Garrison | Microbiome | 2021-01-04 |
| Reply to: Examining microbe-metabolite correlations by linear methods. | James T Morton, Daniel McDonald, Alexander A Aksenov, Louis Felix Nothias, James R Foulds, Robert A Quinn, Michelle H Badri, Tami L Swenson, Marc W Van Goethem, Trent R Northen, Yoshiki Vazquez-Baeza, Mingxun Wang, Nicholas A Bokulich, Aaron Watters, Se Jin Song, Richard Bonneau, Pieter C Dorrestein, Rob Knight | Nature Methods | 2021-01-04 |
| Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater. | Daniel Petras, Jeremiah J Minich, Lucia B Cancelada, Ralph R Torres, Emily Kunselman, Mingxun Wang, Margot E White, Eric E Allen, Kimberly A Prather, Lihini I Aluwihare, Pieter C Dorrestein | Chemosphere | 2021-01-02 |
| COVID-19 and Cancer Comorbidity: Therapeutic Opportunities and Challenges. | Anup S Pathania, Philip Prathipati, Bakrudeen Aa Abdul, Srinivas Chava, Santharam S Katta, Subash C Gupta, Pandu R Gangula, Manoj K Pandey, Donald L Durden, Siddappa N Byrareddy, Kishore B Challagundla | Theranostics | 2021-01-01 |
| COVID19 - Computational Chemists Meet the Moment. | Adrian J Mulholland, Rommie E Amaro | Journal Of Chemical Information And Modeling | 2020-12-31 |
| Pathophysiology of Inflammatory Bowel Diseases. | John T Chang | The New England Journal Of Medicine | 2020-12-31 |
| Genomics Links Inflammation with Neurocognitive Impairment in Children Living with Human Immunodeficiency Virus type-1. | Pratima Rawat, Sean S Brummel, Kumud K Singh, Jihoon Kim, Kelly A Frazer, Sharon Nichols, George R Seage Iii, Paige L Williams, Russell B Van Dyke, Olivier Harismendy, Rodney N Trout, Stephen A Spector, | The Journal Of Infectious Diseases | 2020-12-29 |
| SARS-CoV-2 escape from a highly neutralizing COVID-19 convalescent plasma. | Emanuele Andreano, Giulia Piccini, Danilo Licastro, Lorenzo Casalino, Nicole V Johnson, Ida Paciello, Simeone Dal Monego, Elisa Pantano, Noemi Manganaro, Alessandro Manenti, Rachele Manna, Elisa Casa, Inesa Hyseni, Linda Benincasa, Emanuele Montomoli, Rommie E Amaro, Jason S McLellan, Rino Rappuoli | BioRxiv : The Preprint Server For Biology | 2020-12-28 |
| Data-driven noise modeling of digital DNA melting analysis enables prediction of sequence discriminating power. | Lennart Langouche, April Aralar, Mridu Sinha, Shelley M Lawrence, Stephanie I Fraley, Todd P Coleman | Bioinformatics (Oxford, England) | 2020-12-23 |
| Screening and characterization of polyhydroxyalkanoate granules, and phylogenetic analysis of polyhydroxyalkanoate synthase gene PhaC in cyanobacteria. | Karl Hong, Joris Beld, Tony D Davis, Michael D Burkart, Brian Palenik | Journal Of Phycology | 2020-12-22 |
| Natural Products with Potential to Treat RNA Virus Pathogens Including SARS-CoV-2. | Mitchell P Christy, Yoshinori Uekusa, Lena Gerwick, William H Gerwick | Journal Of Natural Products | 2020-12-22 |
| Application of the Relationship-Based Model to Engagement for Field Trials of Genetically Engineered Malaria Vectors. | Ana Kormos, Gregory C Lanzaro, Ethan Bier, George Dimopoulos, John M Marshall, João Pinto, Adionilde Aguiar Dos Santos, Affane Bacar, Herodes Sousa Pontes Sacramento Rompão, Anthony A James | The American Journal Of Tropical Medicine And Hygiene | 2020-12-21 |
| Immunological memory to SARS-CoV-2 assessed for up to eight months after infection. | Jennifer M Dan, Jose Mateus, Yu Kato, Kathryn M Hastie, Esther Dawen Yu, Caterina E Faliti, Alba Grifoni, Sydney I Ramirez, Sonya Haupt, April Frazier, Catherine Nakao, Vamseedhar Rayaprolu, Stephen A Rawlings, Bjoern Peters, Florian Krammer, Viviana Simon, Erica Ollmann Saphire, Davey M Smith, Daniela Weiskopf, Alessandro Sette, Shane Crotty | BioRxiv : The Preprint Server For Biology | 2020-12-18 |
| Coinfection and infection duration shape how pathogens affect the African buffalo gut microbiota. | Kate A Sabey, Se Jin Song, Anna Jolles, Rob Knight, Vanessa O Ezenwa | The ISME Journal | 2020-12-17 |
| Harnessing Iron Acquisition Machinery to Target Enterobacteriaceae. | Artur Sargun, Romana R Gerner, Manuela Raffatellu, Elizabeth M Nolan | The Journal Of Infectious Diseases | 2020-12-17 |
| Maternal diet alters human milk oligosaccharide composition with implications for the milk metagenome. | Maxim D Seferovic, Mahmoud Mohammad, Ryan M Pace, Melinda Engevik, James Versalovic, Lars Bode, Morey Haymond, Kjersti M Aagaard | Scientific Reports | 2020-12-16 |
| Human milk oligosaccharide DSLNT and gut microbiome in preterm infants predicts necrotising enterocolitis. | Andrea C Masi, Nicholas D Embleton, Christopher A Lamb, Gregory Young, Claire L Granger, Julia Najera, Daniel P Smith, Kristi L Hoffman, Joseph F Petrosino, Lars Bode, Janet E Berrington, Christopher J Stewart | Gut | 2020-12-16 |
| Genome-scale determination of 5´ and 3´ boundaries of RNA transcripts in Streptomyces genomes. | Yongjae Lee, Namil Lee, Soonkyu Hwang, Woori Kim, Yujin Jeong, Suhyung Cho, Bernhard O Palsson, Byung-Kwan Cho | Scientific Data | 2020-12-15 |
| Gut microbiome directs hepatocytes to recruit MDSC and promote cholangiocarcinoma. | Qianfei Zhang, Chi Ma, Yi Duan, Bernd Heinrich, Umberto Rosato, Laurence P Diggs, Lichun Ma, Soumen Roy, Qiong Fu, Zachary J Brown, Simon Wabitsch, Vishal Thovarai, Jianyang Fu, Dechun Feng, Benjamin Ruf, Linda L Cui, Varun Subramanyam, Karen M Frank, Sophie Wang, David E Kleiner, Thomas Ritz, Christian Rupp, Bin Gao, Thomas Longerich, Alexander Kroemer, Xin Wei Wang, Mathuros Ruchirawat, Firouzeh Korangy, Bernd Schnabl, Giorgio Trinchieri, Tim F Greten | Cancer Discovery | 2020-12-15 |
| Gut microbiome, liver immunology, and liver diseases. | Rui Wang, Ruqi Tang, Bo Li, Xiong Ma, Bernd Schnabl, Herbert Tilg | Cellular & Molecular Immunology | 2020-12-14 |
| The Commensal Microbe Veillonella as a Marker for Response to an FGF19 Analog in NASH. | Rohit Loomba, Lei Ling, Duy M Dinh, Alex M DePaoli, Hsiao D Lieu, Stephen A Harrison, Arun J Sanyal | Hepatology (Baltimore, Md.) | 2020-12-11 |
| Machine learning uncovers independently regulated modules in the Bacillus subtilis transcriptome. | Kevin Rychel, Anand V Sastry, Bernhard O Palsson | Nature Communications | 2020-12-11 |
| Gut dysbiosis as a driver in alcohol-induced liver injury. | Bradley Fairfield, Bernd Schnabl | JHEP Reports : Innovation In Hepatology | 2020-12-10 |
| Effects of Extended Postmortem Interval on Microbial Communities in Organs of the Human Cadaver. | Holly Lutz, Alexandria Vangelatos, Neil Gottel, Antonio Osculati, Silvia Visona, Sheree J Finley, Jack A Gilbert, Gulnaz T Javan | Frontiers In Microbiology | 2020-12-08 |
| Neonatal Diet Impacts the Large Intestine Luminal Metabolome at Weaning and Post-Weaning in Piglets Fed Formula or Human Milk. | Fernanda Rosa, Katelin S Matazel, Anne K Bowlin, Keith D Williams, Ahmed A Elolimy, Sean H Adams, Lars Bode, Laxmi Yeruva | Frontiers In Immunology | 2020-12-07 |
| The Gut Microbiome, Aging, and Longevity: A Systematic Review. | Varsha D Badal, Eleonora D Vaccariello, Emily R Murray, Kasey E Yu, Rob Knight, Dilip V Jeste, Tanya T Nguyen | Nutrients | 2020-12-07 |
| Short chain fatty acids produced by Cutibacterium acnes inhibit biofilm formation by Staphylococcus epidermidis. | Kouki Nakamura, Alan M O'Neill, Michael R Williams, Laura Cau, Teruaki Nakatsuji, Alexander R Horswill, Richard L Gallo | Scientific Reports | 2020-12-04 |
| Understanding Microbial Community Dynamics in Up-Flow Bioreactors to Improve Mitigation Strategies for Oil Souring. | Avishek Dutta, Ben Smith, Thomas Goldman, Leanne Walker, Matthew Streets, Bob Eden, Reinhard Dirmeier, Jeff S Bowman | Frontiers In Microbiology | 2020-12-03 |
| Multiplexed CRISPR/CAS9-mediated engineering of pre-clinical mouse models bearing native human B cell receptors. | Xuesong Wang, Rashmi Ray, Sven Kratochvil, Eleonora Melzi, Ying-Cing Lin, Sophie Giguere, Liling Xu, John Warner, Diane Cheon, Alessia Liguori, Bettina Groschel, Nicole Phelps, Yumiko Adachi, Ryan Tingle, Lin Wu, Shane Crotty, Kathrin H Kirsch, Usha Nair, William R Schief, Facundo D Batista | The EMBO Journal | 2020-12-01 |
| Erratum for Rivera-Hernandez et al., "An Experimental Group A Vaccine That Reduces Pharyngitis and Tonsillitis in a Nonhuman Primate Model". | Tania Rivera-Hernandez, Diane G Carnathan, Scott Jones, Amanda J Cork, Mark R Davies, Peter M Moyle, Istvan Toth, Michael R Batzloff, James McCarthy, Victor Nizet, David Goldblatt, Guido Silvestri, Mark J Walker | MBio | 2020-12-01 |
| A multiscale coarse-grained model of the SARS-CoV-2 virion. | Alvin Yu, Alexander J Pak, Peng He, Viviana Monje-Galvan, Lorenzo Casalino, Zied Gaieb, Abigail C Dommer, Rommie E Amaro, Gregory A Voth | Biophysical Journal | 2020-11-28 |
| Survival of the weakest in non-transitive asymmetric interactions among strains of E. coli. | Michael J Liao, Arianna Miano, Chloe B Nguyen, Lin Chao, Jeff Hasty | Nature Communications | 2020-11-27 |
| Role of Epigenetics in the Regulation of Immune Functions of the Skin. | Yu Sawada, Richard L Gallo | The Journal Of Investigative Dermatology | 2020-11-27 |
| Vitamin D metabolites and the gut microbiome in older men. | Robert L Thomas, Lingjing Jiang, John S Adams, Zhenjiang Zech Xu, Jian Shen, Stefan Janssen, Gail Ackermann, Dirk Vanderschueren, Steven Pauwels, Rob Knight, Eric S Orwoll, Deborah M Kado | Nature Communications | 2020-11-26 |
| Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules. | Jonathon L Baker, James T Morton, Márcia Dinis, Ruth Alvarez, Nini C Tran, Rob Knight, Anna Edlund | Genome Research | 2020-11-25 |
| Cell-free DNA (cfDNA) and Exosome Profiling from a Year-Long Human Spaceflight Reveals Circulating Biomarkers. | Daniela Bezdan, Kirill Grigorev, Cem Meydan, Fanny A Pelissier Vatter, Michele Cioffi, Varsha Rao, Matthew MacKay, Kiichi Nakahira, Philip Burnham, Ebrahim Afshinnekoo, Craig Westover, Daniel Butler, Chris Mozsary, Timothy Donahoe, Jonathan Foox, Tejaswini Mishra, Serena Lucotti, Brinda K Rana, Ari M Melnick, Haiying Zhang, Irina Matei, David Kelsen, Kenneth Yu, David C Lyden, Lynn Taylor, Susan M Bailey, Michael P Snyder, Francine E Garrett-Bakelman, Stephan Ossowski, Iwijn De Vlaminck, Christopher E Mason | IScience | 2020-11-25 |
| Hindering triple negative breast cancer progression by targeting endogenous interleukin-30 requires IFNγ signaling. | Carlo Sorrentino, Stefania Livia Ciummo, Luigi D'Antonio, Paola Lanuti, Scott I Abrams, Zhinan Yin, Li-Fan Lu, Emma Di Carlo | Clinical And Translational Medicine | 2020-11-24 |
| Microbiome of the Aerodigestive Tract in Health and Esophageal Disease. | Aws Hasan, Laith K Hasan, Bernd Schnabl, Madeline Greytak, Rena Yadlapati | Digestive Diseases And Sciences | 2020-11-24 |
| Expansion of Gamma-Butyrolactone Signaling Molecule Biosynthesis to Phosphotriester Natural Products. | Yuta Kudo, Takayoshi Awakawa, Yi-Ling Du, Peter A Jordan, Kaitlin E Creamer, Paul R Jensen, Roger G Linington, Katherine S Ryan, Bradley S Moore | ACS Chemical Biology | 2020-11-24 |
| Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra. | Kai Dührkop, Louis-Félix Nothias, Markus Fleischauer, Raphael Reher, Marcus Ludwig, Martin A Hoffmann, Daniel Petras, William H Gerwick, Juho Rousu, Pieter C Dorrestein, Sebastian Böcker | Nature Biotechnology | 2020-11-23 |
| Spatial and temporal variations in Synechococcus microdiversity in the Southern California coastal ecosystem. | Maitreyi Nagarkar, Maggie Wang, Bellineth Valencia, Brian Palenik | Environmental Microbiology | 2020-11-23 |
| Triclosan leads to dysregulation of the metabolic regulator FGF21 exacerbating high fat diet-induced nonalcoholic fatty liver disease. | Mei-Fei Yueh, Feng He, Chen Chen, Catherine Vu, Anupriya Tripathi, Rob Knight, Michael Karin, Shujuan Chen, Robert H Tukey | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-11-23 |
| AI-Driven Multiscale Simulations Illuminate Mechanisms of SARS-CoV-2 Spike Dynamics. | Lorenzo Casalino, Abigail Dommer, Zied Gaieb, Emilia P Barros, Terra Sztain, Surl-Hee Ahn, Anda Trifan, Alexander Brace, Anthony Bogetti, Heng Ma, Hyungro Lee, Matteo Turilli, Syma Khalid, Lillian Chong, Carlos Simmerling, David J Hardy, Julio D C Maia, James C Phillips, Thorsten Kurth, Abraham Stern, Lei Huang, John McCalpin, Mahidhar Tatineni, Tom Gibbs, John E Stone, Shantenu Jha, Arvind Ramanathan, Rommie E Amaro | BioRxiv : The Preprint Server For Biology | 2020-11-20 |
| Multiomics Analysis Provides Insight into the Laboratory Evolution of toward the Metabolic Usage of Fluorinated Indoles. | Federica Agostini, Ludwig Sinn, Daniel Petras, Christian J Schipp, Vladimir Kubyshkin, Allison Ann Berger, Pieter C Dorrestein, Juri Rappsilber, Nediljko Budisa, Beate Koksch | ACS Central Science | 2020-11-20 |
| "[It] is now my responsibility to fulfill that wish:" Clinical and rapid autopsy staff members' experiences and perceptions of HIV reservoir research at the end of life. | Kelly E Perry, Jeff Taylor, Hursch Patel, Sogol Stephanie Javadi, Kushagra Mathur, Andy Kaytes, Susanna Concha-Garcia, Susan Little, Davey Smith, Sara Gianella, Karine Dubé | PloS One | 2020-11-18 |
| Targeting the renin-angiotensin signaling pathway in COVID-19: Unanswered questions, opportunities, and challenges. | Krishna Sriram, Rohit Loomba, Paul A Insel | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-11-17 |
| Targeting pathobionts for the treatment of alcohol-associated liver disease. | Sonja Lang, Münevver Demir, Bernd Schnabl | Liver International : Official Journal Of The International Association For The Study Of The Liver | 2020-11-17 |
| Effective Human Immunodeficiency Virus Molecular Surveillance Requires Identification of Incident Cases of Infection. | Susan J Little, Tom Chen, Rui Wang, Christy Anderson, Sergei Kosakovsky Pond, Masato Nakazawa, William C Mathews, Victor DeGruttola, Davey M Smith | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2020-11-17 |
| Intersection of Polycystic Ovary Syndrome and the Gut Microbiome. | Maryan G Rizk, Varykina G Thackray | Journal Of The Endocrine Society | 2020-11-16 |
| Chemically informed analyses of metabolomics mass spectrometry data with Qemistree. | Anupriya Tripathi, Yoshiki Vázquez-Baeza, Julia M Gauglitz, Mingxun Wang, Kai Dührkop, Mélissa Nothias-Esposito, Deepa D Acharya, Madeleine Ernst, Justin J J van der Hooft, Qiyun Zhu, Daniel McDonald, Asker D Brejnrod, Antonio Gonzalez, Jo Handelsman, Markus Fleischauer, Marcus Ludwig, Sebastian Böcker, Louis-Félix Nothias, Rob Knight, Pieter C Dorrestein | Nature Chemical Biology | 2020-11-16 |
| Call for Original Research Papers for a Special Collection in : the Microbiome and Infection. | Manuela Raffatellu, Andreas J Bäumler | Infection And Immunity | 2020-11-16 |
| The Balance of Stromal BMP Signaling Mediated by GREM1 and ISLR Drives Colorectal Carcinogenesis. | Hiroki Kobayashi, Krystyna A Gieniec, Josephine A Wright, Tongtong Wang, Naoya Asai, Yasuyuki Mizutani, Tadashi Lida, Ryota Ando, Nobumi Suzuki, Tamsin R M Lannagan, Jia Q Ng, Akitoshi Hara, Yukihiro Shiraki, Shinji Mii, Mari Ichinose, Laura Vrbanac, Matthew J Lawrence, Tarik Sammour, Kay Uehara, Gareth Davies, Leszek Lisowski, Ian E Alexander, Yoku Hayakawa, Lisa M Butler, Andrew C W Zannettino, M Omar Din, Jeff Hasty, Alastair D Burt, Simon J Leedham, Anil K Rustgi, Siddhartha Mukherjee, Timothy C Wang, Atsushi Enomoto, Masahide Takahashi, Daniel L Worthley, Susan L Woods | Gastroenterology | 2020-11-14 |
| Sphingosine 1-Phosphate Receptor 2 Is Central to Maintaining Epidermal Barrier Homeostasis. | Satomi Igawa, Ayaka Ohzono, Phoebe Pham, Zhenping Wang, Teruaki Nakatsuji, Tatsuya Dokoshi, Anna Di Nardo | The Journal Of Investigative Dermatology | 2020-11-14 |
| The flexibility of ACE2 in the context of SARS-CoV-2 infection. | Emilia P Barros, Lorenzo Casalino, Zied Gaieb, Abigail C Dommer, Yuzhang Wang, Lucy Fallon, Lauren Raguette, Kellon Belfon, Carlos Simmerling, Rommie E Amaro | Biophysical Journal | 2020-11-13 |
| High-Quality Genome-Scale Models From Error-Prone, Long-Read Assemblies. | Jared T Broddrick, Richard Szubin, Charles J Norsigian, Jonathan M Monk, Bernhard O Palsson, Mary N Parenteau | Frontiers In Microbiology | 2020-11-12 |
| Fungal-bacterial interaction selects for quorum sensing mutants with increased production of natural antifungal compounds. | Andrea G Albarracín Orio, Daniel Petras, Romina A Tobares, Alexander A Aksenov, Mingxun Wang, Florencia Juncosa, Pamela Sayago, Alejandro J Moyano, Pieter C Dorrestein, Andrea M Smania | Communications Biology | 2020-11-12 |
| Bare Versus Hair: Do Pubic Hair Grooming Preferences Dictate the Urogenital Microbiome? | Julia Geynisman-Tan, Kimberly Kenton, Meera Tavathia, Alyson Yee, Jack A Gilbert, Sarah Collins, Christina Lewicky-Gaupp, Margaret Mueller | Female Pelvic Medicine & Reconstructive Surgery | 2020-11-11 |
| Elucidation of Regulatory Modes for Five Two-Component Systems in Escherichia coli Reveals Novel Relationships. | Kumari Sonal Choudhary, Julia A Kleinmanns, Katherine Decker, Anand V Sastry, Ye Gao, Richard Szubin, Yara Seif, Bernhard O Palsson | MSystems | 2020-11-10 |
| Comparative Circulation Dynamics of the Five Main HIV Types in China. | Bram Vrancken, Bin Zhao, Xingguang Li, Xiaoxu Han, Haizhou Liu, Jin Zhao, Ping Zhong, Yi Lin, Junjie Zai, Mingchen Liu, Davey M Smith, Simon Dellicour, Antoine Chaillon | Journal Of Virology | 2020-11-09 |
| Review of Cardiac Involvement in Multisystem Inflammatory Syndrome in Children. | Tarek Alsaied, Adriana H Tremoulet, Jane C Burns, Arwa Saidi, Audrey Dionne, Sean M Lang, Jane W Newburger, Sarah de Ferranti, Kevin G Friedman | Circulation | 2020-11-09 |
| Semicontinuous system for the production of recombinant mCherry protein in Chlamydomonas reinhardtii. | Cesar Andres Diaz Arias, Marcelo Chuei Matsudo, Livia Seno Ferreira-Camargo, João Vitor Dutra Molino, Stephen Patrick Mayfield, João Carlos Monteiro de Carvalho | Biotechnology Progress | 2020-11-09 |
| Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data. | Alexander A Aksenov, Ivan Laponogov, Zheng Zhang, Sophie L F Doran, Ilaria Belluomo, Dennis Veselkov, Wout Bittremieux, Louis Felix Nothias, Mélissa Nothias-Esposito, Katherine N Maloney, Biswapriya B Misra, Alexey V Melnik, Aleksandr Smirnov, Xiuxia Du, Kenneth L Jones, Kathleen Dorrestein, Morgan Panitchpakdi, Madeleine Ernst, Justin J J van der Hooft, Mabel Gonzalez, Chiara Carazzone, Adolfo Amézquita, Chris Callewaert, James T Morton, Robert A Quinn, Amina Bouslimani, Andrea Albarracín Orio, Daniel Petras, Andrea M Smania, Sneha P Couvillion, Meagan C Burnet, Carrie D Nicora, Erika Zink, Thomas O Metz, Viatcheslav Artaev, Elizabeth Humston-Fulmer, Rachel Gregor, Michael M Meijler, Itzhak Mizrahi, Stav Eyal, Brooke Anderson, Rachel Dutton, Raphaël Lugan, Pauline Le Boulch, Yann Guitton, Stephanie Prevost, Audrey Poirier, Gaud Dervilly, Bruno Le Bizec, Aaron Fait, Noga Sikron Persi, Chao Song, Kelem Gashu, Roxana Coras, Monica Guma, Julia Manasson, Jose U Scher, Dinesh Kumar Barupal, Saleh Alseekh, Alisdair R Fernie, Reza Mirnezami, Vasilis Vasiliou, Robin Schmid, Roman S Borisov, Larisa N Kulikova, Rob Knight, Mingxun Wang, George B Hanna, Pieter C Dorrestein, Kirill Veselkov | Nature Biotechnology | 2020-11-09 |
| Response of Horticultural Soil Microbiota to Different Fertilization Practices. | Iratxe Zarraonaindia, Xabier Simón Martínez-Goñi, Olaia Liñero, Marta Muñoz-Colmenero, Mikel Aguirre, David Abad, Igor Baroja-Careaga, Alberto de Diego, Jack A Gilbert, Andone Estonba | Plants (Basel, Switzerland) | 2020-11-06 |
| Alterations in Gut Microbiota Do Not Play a Causal Role in Diet-independent Weight Gain Caused by Ovariectomy. | Lillian Sau, Christine M Olmstead, Laura J Cui, Annie Chen, Reeya S Shah, Scott T Kelley, Varykina G Thackray | Journal Of The Endocrine Society | 2020-11-05 |
| Verrucosamide, a Cytotoxic 1,4-Thiazepane-Containing Thiodepsipeptide from a Marine-Derived Actinomycete. | Vimal Nair, Min Cheol Kim, James A Golen, Arnold L Rheingold, Gabriel A Castro, Paul R Jensen, William Fenical | Marine Drugs | 2020-11-05 |
| The gut mycobiome: a novel player in chronic liver diseases. | Lu Jiang, Peter Stärkel, Jian-Gao Fan, Derrick Eugene Fouts, Petra Bacher, Bernd Schnabl | Journal Of Gastroenterology | 2020-11-05 |
| Coronavirus, social distancing, and global geriatric mental health crisis: opportunities for promoting wisdom and resilience amid a pandemic. | Dilip V Jeste | International Psychogeriatrics | 2020-11-05 |
| A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis. | Tae Gyu Oh, Susy M Kim, Cyrielle Caussy, Ting Fu, Jian Guo, Shirin Bassirian, Seema Singh, Egbert V Madamba, Ricki Bettencourt, Lisa Richards, Ruth T Yu, Annette R Atkins, Tao Huan, David A Brenner, Claude B Sirlin, Michael Downes, Ronald M Evans, Rohit Loomba | Cell Metabolism | 2020-11-04 |
| Host variables confound gut microbiota studies of human disease. | Ivan Vujkovic-Cvijin, Jack Sklar, Lingjing Jiang, Loki Natarajan, Rob Knight, Yasmine Belkaid | Nature | 2020-11-04 |
| Efficient population modification gene-drive rescue system in the malaria mosquito Anopheles stephensi. | Adriana Adolfi, Valentino M Gantz, Nijole Jasinskiene, Hsu-Feng Lee, Kristy Hwang, Gerard Terradas, Emily A Bulger, Arunachalam Ramaiah, Jared B Bennett, J J Emerson, John M Marshall, Ethan Bier, Anthony A James | Nature Communications | 2020-11-03 |
| Discovery of novel secondary metabolites encoded in actinomycete genomes through coculture. | Ji Hun Kim, Namil Lee, Soonkyu Hwang, Woori Kim, Yongjae Lee, Suhyung Cho, Bernhard O Palsson, Byung-Kwan Cho | Journal Of Industrial Microbiology & Biotechnology | 2020-11-02 |
| Bacterial-fungal interactions revealed by genome-wide analysis of bacterial mutant fitness. | Emily C Pierce, Manon Morin, Jessica C Little, Roland B Liu, Joanna Tannous, Nancy P Keller, Kit Pogliano, Benjamin E Wolfe, Laura M Sanchez, Rachel J Dutton | Nature Microbiology | 2020-11-02 |
| High Prevalence of HIV-1 Drug Resistance and Dynamics of Transmission Among High-Risk Populations in Port-au-Prince, Haiti. | Frantz Jean Louis, Jean Wysler Domercant, Caroline Ignacio, Sara Gianella, Guethina Galbaud, Maureen Leonard, Davey M Smith, Antoine Chaillon | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2020-11-02 |
| Multiscale Simulations Examining Glycan Shield Effects on Drug Binding to Influenza Neuraminidase. | Christian Seitz, Lorenzo Casalino, Robert Konecny, Gary Huber, Rommie E Amaro, J Andrew McCammon | Biophysical Journal | 2020-10-31 |
| A cysteine protease inhibitor blocks SARS-CoV-2 infection of human and monkey cells. | Drake M Mellott, Chien-Te Tseng, Aleksandra Drelich, Pavla Fajtová, Bala C Chenna, Demetrios H Kostomiris, Jason Hsu, Jiyun Zhu, Zane W Taylor, Vivian Tat, Ardala Katzfuss, Linfeng Li, Miriam A Giardini, Danielle Skinner, Ken Hirata, Sungjun Beck, Aaron F Carlin, Alex E Clark, Laura Beretta, Daniel Maneval, Felix Frueh, Brett L Hurst, Hong Wang, Klaudia I Kocurek, Frank M Raushel, Anthony J O'Donoghue, Jair Lage de Siqueira-Neto, Thomas D Meek, James H McKerrow | BioRxiv : The Preprint Server For Biology | 2020-10-30 |
| Expanding magnetic organelle biogenesis in the domain Bacteria. | Wei Lin, Wensi Zhang, Greig A Paterson, Qiyun Zhu, Xiang Zhao, Rob Knight, Dennis A Bazylinski, Andrew P Roberts, Yongxin Pan | Microbiome | 2020-10-30 |
| Maintaining Patient Safety and Data Integrity of Nonalcoholic Steatohepatitis Clinical Trials During the Severe Acute Respiratory Syndrome-Coronavirus 2 Pandemic. | Naim Alkhouri, Anita Kohli, Rohit Loomba, Stephen A Harrison | Hepatology (Baltimore, Md.) | 2020-10-29 |
| Trajectories of Depressive Symptoms, Neurocognitive Function, and Viral Suppression With Antiretroviral Therapy Among Youth With HIV Over 36 months. | Jordan N Kohn, Matthew Shane Loop, Julie J Kim-Chang, Patricia A Garvie, John W Sleasman, Bernard Fischer, H Jonathon Rendina, Steven Paul Woods, Sharon L Nichols, Suzi Hong | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2020-10-28 |
| Exploration of Bacterial Bottlenecks and Streptococcus pneumoniae Pathogenesis by CRISPRi-Seq. | Xue Liu, Jacqueline M Kimmey, Laura Matarazzo, Vincent de Bakker, Laurye Van Maele, Jean-Claude Sirard, Victor Nizet, Jan-Willem Veening | Cell Host & Microbe | 2020-10-28 |
| RAAS Inhibitors and Risk of Covid-19. | Krishna Sriram, Rohit Loomba, Paul A Insel | The New England Journal Of Medicine | 2020-10-27 |
| Genetic elucidation of interconnected antibiotic pathways mediating maize innate immunity. | Yezhang Ding, Philipp R Weckwerth, Elly Poretsky, Katherine M Murphy, James Sims, Evan Saldivar, Shawn A Christensen, Si Nian Char, Bing Yang, Anh-Dao Tong, Zhouxin Shen, Karl A Kremling, Edward S Buckler, Tom Kono, David R Nelson, Jörg Bohlmann, Matthew G Bakker, Martha M Vaughan, Ahmed S Khalil, Mariam Betsiashvili, Keini Dressano, Tobias G Köllner, Steven P Briggs, Philipp Zerbe, Eric A Schmelz, Alisa Huffaker | Nature Plants | 2020-10-26 |
| Harmonising regulatory approval for antibiotics in children. | Phoebe C M Williams, John Bradley, Emmanuel Roilides, Linus Olson, Sheldon Kaplan, Irja Lutsar, Carlo Giaquinto, Daniel K Benjamin, Mike Sharland | The Lancet. Child & Adolescent Health | 2020-10-24 |
| Role of Carbon Monoxide in Host-Gut Microbiome Communication. | Christopher P Hopper, Ladie Kimberly De La Cruz, Kristin V Lyles, Lauren K Wareham, Jack A Gilbert, Zehava Eichenbaum, Marcin Magierowski, Robert K Poole, Jakob Wollborn, Binghe Wang | Chemical Reviews | 2020-10-22 |
| CAICE Studies: Insights from a Decade of Ocean-Atmosphere Experiments in the Laboratory. | Kathryn J Mayer, Jon S Sauer, Julie Dinasquet, Kimberly A Prather | Accounts Of Chemical Research | 2020-10-22 |
| Gut microbiome in Schizophrenia: Altered functional pathways related to immune modulation and atherosclerotic risk. | Tanya T Nguyen, Tomasz Kosciolek, Rebecca E Daly, Yoshiki Vázquez-Baeza, Austin Swafford, Rob Knight, Dilip V Jeste | Brain, Behavior, And Immunity | 2020-10-22 |
| Systems biology analysis of the Clostridioides difficile core-genome contextualizes microenvironmental evolutionary pressures leading to genotypic and phenotypic divergence. | Charles J Norsigian, Heather A Danhof, Colleen K Brand, Numan Oezguen, Firas S Midani, Bernhard O Palsson, Tor C Savidge, Robert A Britton, Jennifer K Spinler, Jonathan M Monk | NPJ Systems Biology And Applications | 2020-10-20 |
| Introducing the Mangrove Microbiome Initiative: Identifying Microbial Research Priorities and Approaches To Better Understand, Protect, and Rehabilitate Mangrove Ecosystems. | Sarah M Allard, Matthew T Costa, Ashley N Bulseco, Véronique Helfer, Laetitia G E Wilkins, Christiane Hassenrück, Karsten Zengler, Martin Zimmer, Natalia Erazo, Jorge L Mazza Rodrigues, Norman Duke, Vânia M M Melo, Inka Vanwonterghem, Howard Junca, Huxley M Makonde, Diego Javier Jiménez, Tallita C L Tavares, Marco Fusi, Daniele Daffonchio, Carlos M Duarte, Raquel S Peixoto, Alexandre S Rosado, Jack A Gilbert, Jeff Bowman | MSystems | 2020-10-20 |
| Identifying the effect of vancomycin on health care-associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media. | Akanksha Rajput, Saugat Poudel, Hannah Tsunemoto, Michael Meehan, Richard Szubin, Connor A Olson, Yara Seif, Anne Lamsa, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M Monk, Pieter C Dorrestein, Rob Knight, Joe Pogliano, Victor Nizet, Adam M Feist, Bernhard O Palsson | GigaScience | 2020-10-20 |
| Dynamics and Dispersal of Local HIV Epidemics Within San Diego and Across The San Diego-Tijuana Border. | Bram Vrancken, Sanjay R Mehta, Santiago Ávila-Ríos, Claudia García-Morales, Daniela Tapia-Trejo, Gustavo Reyes-Terán, Samuel Navarro-Álvarez, Susan J Little, Martin Hoenigl, Heather A Pines, Thomas Patterson, Steffanie A Strathdee, Davey M Smith, Simon Dellicour, Antoine Chaillon | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2020-10-20 |
| Evaluation of IL-17D in Host Immunity to Group A Infection. | Allen Washington, Nissi Varki, J Andrés Valderrama, Victor Nizet, Jack D Bui | Journal Of Immunology (Baltimore, Md. : 1950) | 2020-10-19 |
| Expert Panel Review on Non-Alcoholic Fatty Liver Disease in Persons With HIV. | Jordan E Lake, Turner Overton, Susanna Naggie, Mark Sulkowski, Rohit Loomba, David E Kleiner, Jennifer C Price, Kara W Chew, Raymond T Chung, Kathleen E Corey | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2020-10-16 |
| Content and Performance of the MiniMUGA Genotyping Array: A New Tool To Improve Rigor and Reproducibility in Mouse Research. | John Sebastian Sigmon, Matthew W Blanchard, Ralph S Baric, Timothy A Bell, Jennifer Brennan, Gudrun A Brockmann, A Wesley Burks, J Mauro Calabrese, Kathleen M Caron, Richard E Cheney, Dominic Ciavatta, Frank Conlon, David B Darr, James Faber, Craig Franklin, Timothy R Gershon, Lisa Gralinski, Bin Gu, Christiann H Gaines, Robert S Hagan, Ernest G Heimsath, Mark T Heise, Pablo Hock, Folami Ideraabdullah, J Charles Jennette, Tal Kafri, Anwica Kashfeen, Mike Kulis, Vivek Kumar, Colton Linnertz, Alessandra Livraghi-Butrico, K C Kent Lloyd, Cathleen Lutz, Rachel M Lynch, Terry Magnuson, Glenn K Matsushima, Rachel McMullan, Darla R Miller, Karen L Mohlke, Sheryl S Moy, Caroline E Y Murphy, Maya Najarian, Lori O'Brien, Abraham A Palmer, Benjamin D Philpot, Scott H Randell, Laura Reinholdt, Yuyu Ren, Steve Rockwood, Allison R Rogala, Avani Saraswatula, Christopher M Sassetti, Jonathan C Schisler, Sarah A Schoenrock, Ginger D Shaw, John R Shorter, Clare M Smith, Celine L St Pierre, Lisa M Tarantino, David W Threadgill, William Valdar, Barbara J Vilen, Keegan Wardwell, Jason K Whitmire, Lucy Williams, Mark J Zylka, Martin T Ferris, Leonard McMillan, Fernando Pardo Manuel de Villena | Genetics | 2020-10-16 |
| A high-stringency blueprint of the human proteome. | Subash Adhikari, Edouard C Nice, Eric W Deutsch, Lydie Lane, Gilbert S Omenn, Stephen R Pennington, Young-Ki Paik, Christopher M Overall, Fernando J Corrales, Ileana M Cristea, Jennifer E Van Eyk, Mathias Uhlén, Cecilia Lindskog, Daniel W Chan, Amos Bairoch, James C Waddington, Joshua L Justice, Joshua LaBaer, Henry Rodriguez, Fuchu He, Markus Kostrzewa, Peipei Ping, Rebekah L Gundry, Peter Stewart, Sanjeeva Srivastava, Sudhir Srivastava, Fabio C S Nogueira, Gilberto B Domont, Yves Vandenbrouck, Maggie P Y Lam, Sara Wennersten, Juan Antonio Vizcaino, Marc Wilkins, Jochen M Schwenk, Emma Lundberg, Nuno Bandeira, Gyorgy Marko-Varga, Susan T Weintraub, Charles Pineau, Ulrike Kusebauch, Robert L Moritz, Seong Beom Ahn, Magnus Palmblad, Michael P Snyder, Ruedi Aebersold, Mark S Baker | Nature Communications | 2020-10-16 |
| Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. | David E Gordon, Joseph Hiatt, Mehdi Bouhaddou, Veronica V Rezelj, Svenja Ulferts, Hannes Braberg, Alexander S Jureka, Kirsten Obernier, Jeffrey Z Guo, Jyoti Batra, Robyn M Kaake, Andrew R Weckstein, Tristan W Owens, Meghna Gupta, Sergei Pourmal, Erron W Titus, Merve Cakir, Margaret Soucheray, Michael McGregor, Zeynep Cakir, Gwendolyn Jang, Matthew J O'Meara, Tia A Tummino, Ziyang Zhang, Helene Foussard, Ajda Rojc, Yuan Zhou, Dmitry Kuchenov, Ruth Hüttenhain, Jiewei Xu, Manon Eckhardt, Danielle L Swaney, Jacqueline M Fabius, Manisha Ummadi, Beril Tutuncuoglu, Ujjwal Rathore, Maya Modak, Paige Haas, Kelsey M Haas, Zun Zar Chi Naing, Ernst H Pulido, Ying Shi, Inigo Barrio-Hernandez, Danish Memon, Eirini Petsalaki, Alistair Dunham, Miguel Correa Marrero, David Burke, Cassandra Koh, Thomas Vallet, Jesus A Silvas, Caleigh M Azumaya, Christian Billesbølle, Axel F Brilot, Melody G Campbell, Amy Diallo, Miles Sasha Dickinson, Devan Diwanji, Nadia Herrera, Nick Hoppe, Huong T Kratochvil, Yanxin Liu, Gregory E Merz, Michelle Moritz, Henry C Nguyen, Carlos Nowotny, Cristina Puchades, Alexandrea N Rizo, Ursula Schulze-Gahmen, Amber M Smith, Ming Sun, Iris D Young, Jianhua Zhao, Daniel Asarnow, Justin Biel, Alisa Bowen, Julian R Braxton, Jen Chen, Cynthia M Chio, Un Seng Chio, Ishan Deshpande, Loan Doan, Bryan Faust, Sebastian Flores, Mingliang Jin, Kate Kim, Victor L Lam, Fei Li, Junrui Li, Yen-Li Li, Yang Li, Xi Liu, Megan Lo, Kyle E Lopez, Arthur A Melo, Frank R Moss, Phuong Nguyen, Joana Paulino, Komal Ishwar Pawar, Jessica K Peters, Thomas H Pospiech, Maliheh Safari, Smriti Sangwan, Kaitlin Schaefer, Paul V Thomas, Aye C Thwin, Raphael Trenker, Eric Tse, Tsz Kin Martin Tsui, Feng Wang, Natalie Whitis, Zanlin Yu, Kaihua Zhang, Yang Zhang, Fengbo Zhou, Daniel Saltzberg, , Anthony J Hodder, Amber S Shun-Shion, Daniel M Williams, Kris M White, Romel Rosales, Thomas Kehrer, Lisa Miorin, Elena Moreno, Arvind H Patel, Suzannah Rihn, Mir M Khalid, Albert Vallejo-Gracia, Parinaz Fozouni, Camille R Simoneau, Theodore L Roth, David Wu, Mohd Anisul Karim, Maya Ghoussaini, Ian Dunham, Francesco Berardi, Sebastian Weigang, Maxime Chazal, Jisoo Park, James Logue, Marisa McGrath, Stuart Weston, Robert Haupt, C James Hastie, Matthew Elliott, Fiona Brown, Kerry A Burness, Elaine Reid, Mark Dorward, Clare Johnson, Stuart G Wilkinson, Anna Geyer, Daniel M Giesel, Carla Baillie, Samantha Raggett, Hannah Leech, Rachel Toth, Nicola Goodman, Kathleen C Keough, Abigail L Lind, , Reyna J Klesh, Kafi R Hemphill, Jared Carlson-Stevermer, Jennifer Oki, Kevin Holden, Travis Maures, Katherine S Pollard, Andrej Sali, David A Agard, Yifan Cheng, James S Fraser, Adam Frost, Natalia Jura, Tanja Kortemme, Aashish Manglik, Daniel R Southworth, Robert M Stroud, Dario R Alessi, Paul Davies, Matthew B Frieman, Trey Ideker, Carmen Abate, Nolwenn Jouvenet, Georg Kochs, Brian Shoichet, Melanie Ott, Massimo Palmarini, Kevan M Shokat, Adolfo García-Sastre, Jeremy A Rassen, Robert Grosse, Oren S Rosenberg, Kliment A Verba, Christopher F Basler, Marco Vignuzzi, Andrew A Peden, Pedro Beltrao, Nevan J Krogan | Science (New York, N.Y.) | 2020-10-15 |
| Targeting the gut-liver-immune axis to treat cirrhosis. | Thomas Henry Tranah, Lindsey A Edwards, Bernd Schnabl, Debbie Lindsay Shawcross | Gut | 2020-10-15 |
| Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2020 Recommendations of the International Antiviral Society-USA Panel. | Michael S Saag, Rajesh T Gandhi, Jennifer F Hoy, Raphael J Landovitz, Melanie A Thompson, Paul E Sax, Davey M Smith, Constance A Benson, Susan P Buchbinder, Carlos Del Rio, Joseph J Eron, Gerd Fätkenheuer, Huldrych F Günthard, Jean-Michel Molina, Donna M Jacobsen, Paul A Volberding | JAMA | 2020-10-15 |
| Functional and Structural Insights into a Vif/PPP2R5 Complex Elucidated Using Patient HIV-1 Isolates and Computational Modeling. | Daniel J Salamango, Jennifer L McCann, Özlem Demir, Jordan T Becker, Jiayi Wang, Jairam R Lingappa, Nuri A Temiz, William L Brown, Rommie E Amaro, Reuben S Harris | Journal Of Virology | 2020-10-14 |
| TLR4 signaling and macrophage inflammatory responses are dampened by GIV/Girdin. | Lee Swanson, Gajanan D Katkar, Julian Tam, Rama F Pranadinata, Yogitha Chareddy, Jane Coates, Mahitha Shree Anandachar, Vanessa Castillo, Joshua Olson, Victor Nizet, Irina Kufareva, Soumita Das, Pradipta Ghosh | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-10-14 |
| Metabolites from Microbes Isolated from the Skin of the Panamanian Rocket Frog (Anura: Dendrobatidae). | Christian Martin H, Roberto Ibáñez, Louis-Félix Nothias, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein, Marcelino Gutiérrez | Metabolites | 2020-10-13 |
| Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV. | Bryn C Taylor, Kelly C Weldon, Ronald J Ellis, Donald Franklin, Daniel McDonald, Gregory Humphrey, MacKenzie Bryant, Julia Toronczak, Tara Schwartz, Jennifer Iudicello, Robert Heaton, Igor Grant, Sara Gianella, Scott Letendre, Austin Swafford, Pieter C Dorrestein, Rob Knight | MSystems | 2020-10-13 |
| Early-life gut dysbiosis linked to juvenile mortality in ostriches. | Elin Videvall, Se Jin Song, Hanna M Bensch, Maria Strandh, Anel Engelbrecht, Naomi Serfontein, Olof Hellgren, Adriaan Olivier, Schalk Cloete, Rob Knight, Charlie K Cornwallis | Microbiome | 2020-10-12 |
| Intestinal Virome in Patients With Alcoholic Hepatitis. | Lu Jiang, Sonja Lang, Yi Duan, Xinlian Zhang, Bei Gao, Jessica Chopyk, Leila K Schwanemann, Meritxell Ventura-Cots, Ramon Bataller, Francisco Bosques-Padilla, Elizabeth C Verna, Juan G Abraldes, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie L Shawcross, Samuel B Ho, Alexandre Louvet, Michael R Lucey, Philippe Mathurin, Guadalupe Garcia-Tsao, Tatiana Kisseleva, David A Brenner, Xin M Tu, Peter Stärkel, David Pride, Derrick E Fouts, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2020-10-10 |
| Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity. | Xin Fang, Yoshiki Vázquez-Baeza, Emmanuel Elijah, Fernando Vargas, Gail Ackermann, Gregory Humphrey, Rebecca Lau, Kelly C Weldon, Jon G Sanders, Morgan Panitchpakdi, Carolina Carpenter, Alan K Jarmusch, Jennifer Neill, Ara Miralles, Parambir Dulai, Siddharth Singh, Matthew Tsai, Austin D Swafford, Larry Smarr, David L Boyle, Bernhard O Palsson, John T Chang, Pieter C Dorrestein, William J Sandborn, Rob Knight, Brigid S Boland | Inflammatory Bowel Diseases | 2020-10-07 |
| Cross-reactive memory T cells and herd immunity to SARS-CoV-2. | Marc Lipsitch, Yonatan H Grad, Alessandro Sette, Shane Crotty | Nature Reviews. Immunology | 2020-10-06 |
| Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of Antibiotic. | Alison Vrbanac, Kathryn A Patras, Alan K Jarmusch, Robert H Mills, Samuel R Shing, Robert A Quinn, Fernando Vargas, David J Gonzalez, Pieter C Dorrestein, Rob Knight, Victor Nizet | MSystems | 2020-10-06 |
| Distinctive gene and protein characteristics of extremely piezophilic Colwellia. | Logan M Peoples, Than S Kyaw, Juan A Ugalde, Kelli K Mullane, Roger A Chastain, A Aristides Yayanos, Masataka Kusube, Barbara A Methé, Douglas H Bartlett | BMC Genomics | 2020-10-06 |
| Prophage exotoxins enhance colonization fitness in epidemic scarlet fever-causing Streptococcus pyogenes. | Stephan Brouwer, Timothy C Barnett, Diane Ly, Katherine J Kasper, David M P De Oliveira, Tania Rivera-Hernandez, Amanda J Cork, Liam McIntyre, Magnus G Jespersen, Johanna Richter, Benjamin L Schulz, Gordon Dougan, Victor Nizet, Kwok-Yung Yuen, Yuanhai You, John K McCormick, Martina L Sanderson-Smith, Mark R Davies, Mark J Walker | Nature Communications | 2020-10-06 |
| metaFlye: scalable long-read metagenome assembly using repeat graphs. | Mikhail Kolmogorov, Derek M Bickhart, Bahar Behsaz, Alexey Gurevich, Mikhail Rayko, Sung Bong Shin, Kristen Kuhn, Jeffrey Yuan, Evgeny Polevikov, Timothy P L Smith, Pavel A Pevzner | Nature Methods | 2020-10-05 |
| Airborne transmission of SARS-CoV-2. | Kimberly A Prather, Linsey C Marr, Robert T Schooley, Melissa A McDiarmid, Mary E Wilson, Donald K Milton | Science (New York, N.Y.) | 2020-10-05 |
| Cholesterol 25-Hydroxylase inhibits SARS-CoV-2 and other coronaviruses by depleting membrane cholesterol. | Shaobo Wang, Wanyu Li, Hui Hui, Shashi Kant Tiwari, Qiong Zhang, Ben A Croker, Stephen Rawlings, Davey Smith, Aaron F Carlin, Tariq M Rana | The EMBO Journal | 2020-10-05 |
| Fecal Microbiota Transplantation Is Highly Effective in Real-World Practice: Initial Results From the FMT National Registry. | Colleen R Kelly, Eugene F Yen, Ari M Grinspan, Stacy A Kahn, Ashish Atreja, James D Lewis, Thomas A Moore, David T Rubin, Alison M Kim, Sonya Serra, Yanina Nersesova, Lydia Fredell, Dea Hunsicker, Daniel McDonald, Rob Knight, Jessica R Allegretti, Joel Pekow, Imad Absah, Ronald Hsu, Jennifer Vincent, Sahil Khanna, Lyn Tangen, Carl V Crawford, Mark C Mattar, Lea Ann Chen, Monika Fischer, Razvan I Arsenescu, Paul Feuerstadt, Jonathan Goldstein, David Kerman, Adam C Ehrlich, Gary D Wu, Loren Laine | Gastroenterology | 2020-10-01 |
| Transcriptomic Analysis Reveals Common Adaptation Mechanisms Under Different Stresses for Moderately Piezophilic Bacteria. | Han Wang, Yu Zhang, Douglas H Bartlett, Xiang Xiao | Microbial Ecology | 2020-09-30 |
| A Distinct Microbiome Signature in Posttreatment Lyme Disease Patients. | Madeleine Morrissette, Norman Pitt, Antonio González, Philip Strandwitz, Mariaelena Caboni, Alison W Rebman, Rob Knight, Anthony D'Onofrio, John N Aucott, Mark J Soloski, Kim Lewis | MBio | 2020-09-29 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Journal Of Virology | 2020-09-29 |
| Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome. | Bryn C Taylor, Kelly C Weldon, Ronald J Ellis, Donald Franklin, Tobin Groth, Emily C Gentry, Anupriya Tripathi, Daniel McDonald, Gregory Humphrey, MacKenzie Bryant, Julia Toronczak, Tara Schwartz, Michelli F Oliveira, Robert Heaton, Igor Grant, Sara Gianella, Scott Letendre, Austin Swafford, Pieter C Dorrestein, Rob Knight | MSystems | 2020-09-29 |
| Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans. | Connie W Y Ha, Anthony Martin, Gregory D Sepich-Poore, Baochen Shi, Yizhou Wang, Kenneth Gouin, Gregory Humphrey, Karenina Sanders, Yasiru Ratnayake, Kelvin S L Chan, Gustaf Hendrick, J R Caldera, Christian Arias, Jacob E Moskowitz, Shannan J Ho Sui, Shaohong Yang, David Underhill, Matthew J Brady, Simon Knott, Kelly Kaihara, Michael J Steinbaugh, Huiying Li, Dermot P B McGovern, Rob Knight, Phillip Fleshner, Suzanne Devkota | Cell | 2020-09-28 |
| Androsamide, a Cyclic Tetrapeptide from a Marine sp., Suppresses Motility of Colorectal Cancer Cells. | Jihye Lee, Chathurika D B Gamage, Geum Jin Kim, Prima F Hillman, Chaeyoung Lee, Eun Young Lee, Hyukjae Choi, Hangun Kim, Sang-Jip Nam, William Fenical | Journal Of Natural Products | 2020-09-28 |
| Optimal Threshold of Controlled Attenuation Parameter for Detection of HIV-Associated NAFLD With Magnetic Resonance Imaging as the Reference Standard. | Veeral H Ajmera, Edward R Cachay, Christian B Ramers, Shirin Bassirian, Seema Singh, Richele Bettencourt, Lisa Richards, Gavin Hamilton, Michael Middleton, Katie Fowler, Claude Sirlin, Rohit Loomba | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2020-09-25 |
| Yeast homologs of human MCUR1 regulate mitochondrial proline metabolism. | Mohammad Zulkifli, John K Neff, Shrishiv A Timbalia, Natalie M Garza, Yingqi Chen, Jeramie D Watrous, Marta Murgia, Prachi P Trivedi, Steven K Anderson, Dhanendra Tomar, Roland Nilsson, Muniswamy Madesh, Mohit Jain, Vishal M Gohil | Nature Communications | 2020-09-25 |
| Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut microbiota. | Anton Lavrinienko, Eugene Tukalenko, Timothy A Mousseau, Luke R Thompson, Rob Knight, Tapio Mappes, Phillip C Watts | Scientific Data | 2020-09-23 |
| Nutrition and the Gut Microbiota in 10- to 18-Month-Old Children Living in Urban Slums of Mumbai, India. | Samantha L Huey, Lingjing Jiang, Marcus W Fedarko, Daniel McDonald, Cameron Martino, Farhana Ali, David G Russell, Shobha A Udipi, Aparna Thorat, Varsha Thakker, Padmini Ghugre, R D Potdar, Harsha Chopra, Kripa Rajagopalan, Jere D Haas, Julia L Finkelstein, Rob Knight, Saurabh Mehta | MSphere | 2020-09-23 |
| Cross-reactive serum and memory B cell responses to spike protein in SARS-CoV-2 and endemic coronavirus infection. | Ge Song, Wan-Ting He, Sean Callaghan, Fabio Anzanello, Deli Huang, James Ricketts, Jonathan L Torres, Nathan Beutler, Linghang Peng, Sirena Vargas, Jon Cassell, Mara Parren, Linlin Yang, Caroline Ignacio, Davey M Smith, James E Voss, David Nemazee, Andrew B Ward, Thomas Rogers, Dennis R Burton, Raiees Andrabi | BioRxiv : The Preprint Server For Biology | 2020-09-23 |
| The Bitome: digitized genomic features reveal fundamental genome organization. | Cameron R Lamoureux, Kumari Sonal Choudhary, Zachary A King, Troy E Sandberg, Ye Gao, Anand V Sastry, Patrick V Phaneuf, Donghui Choe, Byung-Kwan Cho, Bernhard O Palsson | Nucleic Acids Research | 2020-09-23 |
| The Pseudomonas aeruginosa protease LasB directly activates IL-1β. | Josh Sun, Doris L LaRock, Elaine A Skowronski, Jacqueline M Kimmey, Joshua Olson, Zhenze Jiang, Anthony J O'Donoghue, Victor Nizet, Christopher N LaRock | EBioMedicine | 2020-09-23 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Journal Of Clinical Microbiology | 2020-09-22 |
| CD8 T cells drive anorexia, dysbiosis, and blooms of a commensal with immunosuppressive potential after viral infection. | Lara Labarta-Bajo, Anna Gramalla-Schmitz, Romana R Gerner, Katelynn R Kazane, Gregory Humphrey, Tara Schwartz, Karenina Sanders, Austin Swafford, Rob Knight, Manuela Raffatellu, Elina I Zúñiga | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-09-21 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Antimicrobial Agents And Chemotherapy | 2020-09-21 |
| Reconstructing organisms in silico: genome-scale models and their emerging applications. | Xin Fang, Colton J Lloyd, Bernhard O Palsson | Nature Reviews. Microbiology | 2020-09-21 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Infection And Immunity | 2020-09-18 |
| Antigen-Specific Adaptive Immunity to SARS-CoV-2 in Acute COVID-19 and Associations with Age and Disease Severity. | Carolyn Rydyznski Moderbacher, Sydney I Ramirez, Jennifer M Dan, Alba Grifoni, Kathryn M Hastie, Daniela Weiskopf, Simon Belanger, Robert K Abbott, Christina Kim, Jinyong Choi, Yu Kato, Eleanor G Crotty, Cheryl Kim, Stephen A Rawlings, Jose Mateus, Long Ping Victor Tse, April Frazier, Ralph Baric, Bjoern Peters, Jason Greenbaum, Erica Ollmann Saphire, Davey M Smith, Alessandro Sette, Shane Crotty | Cell | 2020-09-16 |
| Biomolecular Simulations in the Time of COVID19, and After. | Rommie E Amaro, Adrian J Mulholland | Computing In Science & Engineering | 2020-09-15 |
| iModulonDB: a knowledgebase of microbial transcriptional regulation derived from machine learning. | Kevin Rychel, Katherine Decker, Anand V Sastry, Patrick V Phaneuf, Saugat Poudel, Bernhard O Palsson | Nucleic Acids Research | 2020-09-15 |
| HIV Care Prioritization Using Phylogenetic Branch Length. | Niema Moshiri, Davey M Smith, Siavash Mirarab | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2020-09-14 |
| MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets. | Meena Choi, Jeremy Carver, Cristina Chiva, Manuel Tzouros, Ting Huang, Tsung-Heng Tsai, Benjamin Pullman, Oliver M Bernhardt, Ruth Hüttenhain, Guo Ci Teo, Yasset Perez-Riverol, Jan Muntel, Maik Müller, Sandra Goetze, Maria Pavlou, Erik Verschueren, Bernd Wollscheid, Alexey I Nesvizhskii, Lukas Reiter, Tom Dunkley, Eduard Sabidó, Nuno Bandeira, Olga Vitek | Nature Methods | 2020-09-14 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Molecular And Cellular Biology | 2020-09-14 |
| Genetic examination of the marine bacterium Pseudoalteromonas luteoviolacea and effects of its metamorphosis-inducing factors. | Amanda T Alker, Nathalie Delherbe, Trevor N Purdy, Bradley S Moore, Nicholas J Shikuma | Environmental Microbiology | 2020-09-13 |
| Shining Light on the COVID-19 Pandemic: A Vitamin D Receptor Checkpoint in Defense of Unregulated Wound Healing. | Ronald M Evans, Scott M Lippman | Cell Metabolism | 2020-09-11 |
| From intestinal dysbiosis to alcohol-associated liver disease. | Beatriz Garcia Mendes, Bernd Schnabl | Clinical And Molecular Hepatology | 2020-09-11 |
| Complementary Genomic, Bioinformatics, and Chemical Approaches Facilitate the Absolute Structure Assignment of Ionostatin, a Linear Polyketide from a Rare Marine-Derived Actinomycete. | Min Cheol Kim, Jaclyn M Winter, Reiko Cullum, Zhifei Li, William Fenical | ACS Chemical Biology | 2020-09-09 |
| The microbiota in cirrhosis and its role in hepatic decompensation. | Jonel Trebicka, Jane Macnaughtan, Bernd Schnabl, Debbie L Shawcross, Jasmohan S Bajaj | Journal Of Hepatology | 2020-09-08 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Journal Of Bacteriology | 2020-09-08 |
| Restoration of fitness lost due to dysregulation of the pyruvate dehydrogenase complex is triggered by ribosomal binding site modifications. | Amitesh Anand, Connor A Olson, Anand V Sastry, Arjun Patel, Richard Szubin, Laurence Yang, Adam M Feist, Bernhard O Palsson | Cell Reports | 2020-09-08 |
| Recommendations for measuring HIV reservoir size in cure-directed clinical trials. | Mohamed Abdel-Mohsen, Douglas Richman, Robert F Siliciano, Michel C Nussenzweig, Bonnie J Howell, Javier Martinez-Picado, Nicolas Chomont, Katharine J Bar, Xu G Yu, Mathias Lichterfeld, Jose Alcami, Daria Hazuda, Frederic Bushman, Janet D Siliciano, Michael R Betts, Adam M Spivak, Vicente Planelles, Beatrice H Hahn, Davey M Smith, Ya-Chi Ho, Maria J Buzon, Christian Gaebler, Mirko Paiardini, Qingsheng Li, Jacob D Estes, Thomas J Hope, Jay Kostman, Karam Mounzer, Marina Caskey, Lawrence Fox, Ian Frank, James L Riley, Pablo Tebas, Luis J Montaner, | Nature Medicine | 2020-09-07 |
| Lactose-reduced infant formula with added corn syrup solids is associated with a distinct gut microbiota in Hispanic infants. | Roshonda B Jones, Paige K Berger, Jasmine F Plows, Tanya L Alderete, Joshua Millstein, Jennifer Fogel, Stanislav N Iablokov, Dmitry A Rodionov, Andrei L Osterman, Lars Bode, Michael I Goran | Gut Microbes | 2020-09-05 |
| ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy. | Chao Zhang, Celine Scornavacca, Erin K Molloy, Siavash Mirarab | Molecular Biology And Evolution | 2020-09-05 |
| Both HIV and Tat expression decrease prepulse inhibition with further impairment by methamphetamine. | T Jordan Walter, Jared W Young, Morgane Milienne-Petiot, D S Deben, Robert K Heaton, Scott Letendre, David J Grelotti, William Perry, Igor Grant, Arpi Minassian, | Progress In Neuro-psychopharmacology & Biological Psychiatry | 2020-09-04 |
| Lactobacillus commensals autochthonous to human milk have the hallmarks of potent probiotics. | Jasia Anjum, Shahid Nazir, Muhammad Tariq, Kim Barrett, Arsalan Zaidi | Microbiology (Reading, England) | 2020-09-04 |
| Cost-effectiveness analysis of pre-exposure prophylaxis for the prevention of HIV in men who have sex with men in South Korea: a mathematical modelling study. | Heun Choi, Jiyeon Suh, Woonji Lee, Jun Hyoung Kim, Jung Ho Kim, Hye Seong, Jin Young Ahn, Su Jin Jeong, Nam Su Ku, Yoon Soo Park, Joon Sup Yeom, Changsoo Kim, Hee-Dae Kwon, Davey M Smith, Jeehyun Lee, Jun Yong Choi | Scientific Reports | 2020-09-03 |
| Genome Mining, Microbial Interactions, and Molecular Networking Reveals New Dibromoalterochromides from Strains of of Coiba National Park-Panama. | Librada A Atencio, Cristopher A Boya P, Christian Martin H, Luis C Mejía, Pieter C Dorrestein, Marcelino Gutiérrez | Marine Drugs | 2020-09-03 |
| Suppression of local type I interferon by gut microbiota-derived butyrate impairs antitumor effects of ionizing radiation. | Kaiting Yang, Yuzhu Hou, Yuan Zhang, Hua Liang, Anukriti Sharma, Wenxin Zheng, Liangliang Wang, Rolando Torres, Ken Tatebe, Steven J Chmura, Sean P Pitroda, Jack A Gilbert, Yang-Xin Fu, Ralph R Weichselbaum | The Journal Of Experimental Medicine | 2020-09-03 |
| Genome-Wide Dynamic Evaluation of the UV-Induced DNA Damage Response. | Erica Silva, Manuel Michaca, Brenton Munson, Gordon J Bean, Philipp A Jaeger, Katherine Licon, Elizabeth A Winzeler, Trey Ideker | G3 (Bethesda, Md.) | 2020-09-02 |
| Chemical composition of material extractives influences microbial growth and dynamics on wetted wood materials. | Dan Zhao, Cesar Cardona, Neil Gottel, Valerie J Winton, Paul M Thomas, Daniel A Raba, Scott T Kelley, Christopher Henry, Jack A Gilbert, Brent Stephens | Scientific Reports | 2020-09-02 |
| Loneliness Versus Wisdom Amid Two Concurrent Pandemics of Loneliness. | Dilip V Jeste, Ellen E Lee | The American Journal Of Geriatric Psychiatry : Official Journal Of The American Association For Geriatric Psychiatry | 2020-09-02 |
| Discovery and Verification of Extracellular miRNA Biomarkers for Non-invasive Prediction of Pre-eclampsia in Asymptomatic Women. | Srimeenakshi Srinivasan, Ryan Treacy, Tiffany Herrero, Richelle Olsen, Trevor R Leonardo, Xuan Zhang, Peter DeHoff, Cuong To, Lara G Poling, Aileen Fernando, Sandra Leon-Garcia, Katharine Knepper, Vy Tran, Morgan Meads, Jennifer Tasarz, Aishwarya Vuppala, Soojin Park, Clara D Laurent, Tony Bui, Pike See Cheah, Rachael Tabitha Overcash, Gladys A Ramos, Hilary Roeder, Ionita Ghiran, Mana Parast, , Xandra O Breakefield, Amir J Lueth, Sharon R Rust, Max T Dufford, Angela C Fox, Durlin E Hickok, Julja Burchard, J Jay Boniface, Louise C Laurent | Cell Reports. Medicine | 2020-09-01 |
| B cells expressing authentic naive human VRC01-class BCRs can be recruited to germinal centers and affinity mature in multiple independent mouse models. | Deli Huang, Robert K Abbott, Colin Havenar-Daughton, Patrick D Skog, Rita Al-Kolla, Bettina Groschel, Tanya R Blane, Sergey Menis, Jenny Tuyet Tran, Theresa C Thinnes, Sabrina A Volpi, Alessia Liguori, Torben Schiffner, Sophia M Villegas, Oleksandr Kalyuzhniy, Mark Pintea, James E Voss, Nicole Phelps, Ryan Tingle, Alberto R Rodriguez, Greg Martin, Sergey Kupryianov, Allan deCamp, William R Schief, David Nemazee, Shane Crotty | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-09-01 |
| Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers. | David Heckmann, Anaamika Campeau, Colton J Lloyd, Patrick V Phaneuf, Ying Hefner, Marvic Carrillo-Terrazas, Adam M Feist, David J Gonzalez, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-09-01 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Applied And Environmental Microbiology | 2020-09-01 |
| Iron at the host-microbe interface. | Romana R Gerner, Sean-Paul Nuccio, Manuela Raffatellu | Molecular Aspects Of Medicine | 2020-09-01 |
| Context-aware dimensionality reduction deconvolutes gut microbial community dynamics. | Cameron Martino, Liat Shenhav, Clarisse A Marotz, George Armstrong, Daniel McDonald, Yoshiki Vázquez-Baeza, James T Morton, Lingjing Jiang, Maria Gloria Dominguez-Bello, Austin D Swafford, Eran Halperin, Rob Knight | Nature Biotechnology | 2020-08-31 |
| Exercise Training Reverses Gut Dysbiosis in Patients With Biopsy-Proven Nonalcoholic Steatohepatitis: A Proof of Concept Study. | Alexa Hughes, Jessica Dahmus, Gloriany Rivas, Breianna Hummer, Jeremy R Chen See, Justin R Wright, Regina Lamendella, Kathryn H Schmitz, Christopher Sciamanna, Mack Ruffin, Andrew D Patterson, Rohit Loomba, Jonathan G Stine | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2020-08-31 |
| A case of mistaken identity: of the orbit. | Allison J Chen, Lilangi S Ediriwickrema, Rohan Verma, Vera Vavinskaya, Solomon Shaftel, Adam S Deconde, Bobby S Korn, Don O Kikkawa, Catherine Y Liu | Orbit (Amsterdam, Netherlands) | 2020-08-30 |
| Quantitative profiling of built environment bacterial and fungal communities reveals dynamic material dependent growth patterns and microbial interactions. | Ying Xu, Ruby Tandon, Chrislyn Ancheta, Pablo Arroyo, Jack A Gilbert, Brent Stephens, Scott T Kelley | Indoor Air | 2020-08-28 |
| Multifaceted Effects of Antigen Valency on B Cell Response Composition and Differentiation In Vivo. | Yu Kato, Robert K Abbott, Brian L Freeman, Sonya Haupt, Bettina Groschel, Murillo Silva, Sergey Menis, Darrell J Irvine, William R Schief, Shane Crotty | Immunity | 2020-08-27 |
| Association of Body Mass Index with Fecal Microbial Diversity and Metabolites in the Northern Finland Birth Cohort. | Erikka Loftfield, Karl-Heinz Herzig, J Gregory Caporaso, Andriy Derkach, Yunhu Wan, Doratha A Byrd, Emily Vogtmann, Minna Männikkö, Ville Karhunen, Rob Knight, Marc J Gunter, Marjo-Riitta Järvelin, Rashmi Sinha | Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology | 2020-08-27 |
| HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers. | Shuling Ren, Daria A Gaykalova, Theresa Guo, Alexander V Favorov, Elana J Fertig, Pablo Tamayo, Juan Luis Callejas-Valera, Mike Allevato, Mara Gilardi, Jessica Santos, Takahito Fukusumi, Akihiro Sakai, Mizuo Ando, Sayed Sadat, Chao Liu, Guorong Xu, Kathleen M Fisch, Zhiyong Wang, Alfredo A Molinolo, J Silvio Gutkind, Trey Ideker, Wayne M Koch, Joseph A Califano | Oncogene | 2020-08-26 |
| Multidimensional Proteome Profiling of Blood-Brain Barrier Perturbation by Group B . | Anaamika Campeau, Robert H Mills, Marie Blanchette, Kaja Bajc, Mario Malfavon, Roeben N Munji, Liwen Deng, Bryan Hancock, Kathryn A Patras, Joshua Olson, Victor Nizet, Richard Daneman, Kelly Doran, David J Gonzalez | MSystems | 2020-08-25 |
| Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy. | Andrew Oliver, Brandon LaMere, Claudia Weihe, Stephen Wandro, Karen L Lindsay, Pathik D Wadhwa, David A Mills, David T Pride, Oliver Fiehn, Trent Northen, Markus de Raad, Huiying Li, Jennifer B H Martiny, Susan Lynch, Katrine Whiteson | MBio | 2020-08-25 |
| The Southern Bluefin Tuna Mucosal Microbiome Is Influenced by Husbandry Method, Net Pen Location, and Anti-parasite Treatment. | Jeremiah J Minich, Cecilia Power, Michaela Melanson, Rob Knight, Claire Webber, Kirsten Rough, Nathan J Bott, Barbara Nowak, Eric E Allen | Frontiers In Microbiology | 2020-08-24 |
| Fructose stimulated de novo lipogenesis is promoted by inflammation. | Jelena Todoric, Giuseppe Di Caro, Saskia Reibe, Darren C Henstridge, Courtney R Green, Alison Vrbanac, Fatih Ceteci, Claire Conche, Reginald McNulty, Shabnam Shalapour, Koji Taniguchi, Peter J Meikle, Jeramie D Watrous, Rafael Moranchel, Mahan Najhawan, Mohit Jain, Xiao Liu, Tatiana Kisseleva, Maria T Diaz-Meco, Jorge Moscat, Rob Knight, Florian R Greten, Lester F Lau, Christian M Metallo, Mark A Febbraio, Michael Karin | Nature Metabolism | 2020-08-24 |
| Feature-based molecular networking in the GNPS analysis environment. | Louis-Félix Nothias, Daniel Petras, Robin Schmid, Kai Dührkop, Johannes Rainer, Abinesh Sarvepalli, Ivan Protsyuk, Madeleine Ernst, Hiroshi Tsugawa, Markus Fleischauer, Fabian Aicheler, Alexander A Aksenov, Oliver Alka, Pierre-Marie Allard, Aiko Barsch, Xavier Cachet, Andres Mauricio Caraballo-Rodriguez, Ricardo R Da Silva, Tam Dang, Neha Garg, Julia M Gauglitz, Alexey Gurevich, Giorgis Isaac, Alan K Jarmusch, Zdeněk Kameník, Kyo Bin Kang, Nikolas Kessler, Irina Koester, Ansgar Korf, Audrey Le Gouellec, Marcus Ludwig, Christian Martin H, Laura-Isobel McCall, Jonathan McSayles, Sven W Meyer, Hosein Mohimani, Mustafa Morsy, Oriane Moyne, Steffen Neumann, Heiko Neuweger, Ngoc Hung Nguyen, Melissa Nothias-Esposito, Julien Paolini, Vanessa V Phelan, Tomáš Pluskal, Robert A Quinn, Simon Rogers, Bindesh Shrestha, Anupriya Tripathi, Justin J J van der Hooft, Fernando Vargas, Kelly C Weldon, Michael Witting, Heejung Yang, Zheng Zhang, Florian Zubeil, Oliver Kohlbacher, Sebastian Böcker, Theodore Alexandrov, Nuno Bandeira, Mingxun Wang, Pieter C Dorrestein | Nature Methods | 2020-08-24 |
| Evaluation for SARS-CoV-2 in Breast Milk From 18 Infected Women. | Christina Chambers, Paul Krogstad, Kerri Bertrand, Deisy Contreras, Nicole H Tobin, Lars Bode, Grace Aldrovandi | JAMA | 2020-08-22 |
| Sustained attention and vigilance deficits associated with HIV and a history of methamphetamine dependence. | Nina Pocuca, Jared W Young, David A MacQueen, Scott Letendre, Robert K Heaton, Mark A Geyer, William Perry, Igor Grant, Arpi Minassian, | Drug And Alcohol Dependence | 2020-08-22 |
| Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates. | Joana Damas, Graham M Hughes, Kathleen C Keough, Corrie A Painter, Nicole S Persky, Marco Corbo, Michael Hiller, Klaus-Peter Koepfli, Andreas R Pfenning, Huabin Zhao, Diane P Genereux, Ross Swofford, Katherine S Pollard, Oliver A Ryder, Martin T Nweeia, Kerstin Lindblad-Toh, Emma C Teeling, Elinor K Karlsson, Harris A Lewin | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-08-21 |
| Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. | Jeremiah Minich, Farhana Ali, Clarisse Marotz, Pedro Belda-Ferre, Leslie Chiang, Justin P Shaffer, Carolina S Carpenter, Daniel McDonald, Jack Gilbert, Sarah M Allard, Eric E Allen, Rob Knight, Daniel A Sweeney, Austin D Swafford | Research Square | 2020-08-18 |
| Microbe-Metabolite Associations Linked to the Rebounding Murine Gut Microbiome Postcolonization with Vancomycin-Resistant Enterococcus faecium. | Andre Mu, Glen P Carter, Lucy Li, Nicole S Isles, Alison F Vrbanac, James T Morton, Alan K Jarmusch, David P De Souza, Vinod K Narayana, Komal Kanojia, Brunda Nijagal, Malcolm J McConville, Rob Knight, Benjamin P Howden, Timothy P Stinear | MSystems | 2020-08-18 |
| N-glycolyl chondroitin synthesis using metabolically engineered E. coli. | Adeola E Awofiranye, Sultan N Baytas, Ke Xia, Abinaya Badri, Wenqin He, Ajit Varki, Mattheos Koffas, Robert J Linhardt | AMB Express | 2020-08-17 |
| ReDU: a framework to find and reanalyze public mass spectrometry data. | Alan K Jarmusch, Mingxun Wang, Christine M Aceves, Rohit S Advani, Shaden Aguirre, Alexander A Aksenov, Gajender Aleti, Allegra T Aron, Anelize Bauermeister, Sanjana Bolleddu, Amina Bouslimani, Andres Mauricio Caraballo Rodriguez, Rama Chaar, Roxana Coras, Emmanuel O Elijah, Madeleine Ernst, Julia M Gauglitz, Emily C Gentry, Makhai Husband, Scott A Jarmusch, Kenneth L Jones, Zdenek Kamenik, Audrey Le Gouellec, Aileen Lu, Laura-Isobel McCall, Kerry L McPhail, Michael J Meehan, Alexey V Melnik, Riya C Menezes, Yessica Alejandra Montoya Giraldo, Ngoc Hung Nguyen, Louis Felix Nothias, Mélissa Nothias-Esposito, Morgan Panitchpakdi, Daniel Petras, Robert A Quinn, Nicole Sikora, Justin J J van der Hooft, Fernando Vargas, Alison Vrbanac, Kelly C Weldon, Rob Knight, Nuno Bandeira, Pieter C Dorrestein | Nature Methods | 2020-08-17 |
| Ur-ine Old Age: Urinary Microbiome of Older Community Dwelling Women. | Alan J Wolfe, Linda Brubaker | Cell Host & Microbe | 2020-08-14 |
| Vaginal estrogen therapy is associated with increased Lactobacillus in the urine of postmenopausal women with overactive bladder symptoms. | Krystal Thomas-White, Susanne Taege, Roberto Limeira, Cynthia Brincat, Cara Joyce, Evann E Hilt, Laura Mac-Daniel, Katherine A Radek, Linda Brubaker, Elizabeth R Mueller, Alan J Wolfe | American Journal Of Obstetrics And Gynecology | 2020-08-11 |
| Genome-Scale Metabolic Model of pv. : An Approach to Elucidate Pathogenicity at the Metabolic Level. | David Botero, Jonathan Monk, María Juliana Rodríguez Cubillos, Andrés Rodríguez Cubillos, Mariana Restrepo, Vivian Bernal-Galeano, Alejandro Reyes, Andrés González Barrios, Bernhard Ø Palsson, Silvia Restrepo, Adriana Bernal | Frontiers In Genetics | 2020-08-11 |
| System-level understanding of gene expression and regulation for engineering secondary metabolite production in Streptomyces. | Yongjae Lee, Namil Lee, Soonkyu Hwang, Kangsan Kim, Woori Kim, Jihun Kim, Suhyung Cho, Bernhard O Palsson, Byung-Kwan Cho | Journal Of Industrial Microbiology & Biotechnology | 2020-08-10 |
| Synthetic cross-phyla gene replacement and evolutionary assimilation of major enzymes. | Troy E Sandberg, Richard Szubin, Patrick V Phaneuf, Bernhard O Palsson | Nature Ecology & Evolution | 2020-08-10 |
| No Evidence of SARS-CoV-2 Seminal Shedding Despite SARS-CoV-2 Persistence in the Upper Respiratory Tract. | Stephen A Rawlings, Caroline Ignacio, Magali Porrachia, Pinyi Du, Davey M Smith, Antoine Chaillon | Open Forum Infectious Diseases | 2020-08-07 |
| Active Microneedle Administration of Plant Virus Nanoparticles for Cancer Vaccination Improves Immunotherapeutic Efficacy. | Christine E Boone, Chao Wang, Miguel Angel Lopez-Ramirez, Veronique Beiss, Sourabh Shukla, Paul L Chariou, Daniel Kupor, Ricardo Rueda, Joseph Wang, Nicole F Steinmetz | ACS Applied Nano Materials | 2020-08-07 |
| Targeting HIV Env immunogens to B cell follicles in nonhuman primates through immune complex or protein nanoparticle formulations. | Jacob T Martin, Christopher A Cottrell, Aleksandar Antanasijevic, Diane G Carnathan, Benjamin J Cossette, Chiamaka A Enemuo, Etse H Gebru, Yury Choe, Federico Viviano, Stephanie Fischinger, Talar Tokatlian, Kimberly M Cirelli, George Ueda, Jeffrey Copps, Torben Schiffner, Sergey Menis, Galit Alter, William R Schief, Shane Crotty, Neil P King, David Baker, Guido Silvestri, Andrew B Ward, Darrell J Irvine | NPJ Vaccines | 2020-08-05 |
| Targeting HIV Env immunogens to B cell follicles in nonhuman primates through immune complex or protein nanoparticle formulations. | Jacob T Martin, Christopher A Cottrell, Aleksandar Antanasijevic, Diane G Carnathan, Benjamin J Cossette, Chiamaka A Enemuo, Etse H Gebru, Yury Choe, Federico Viviano, Stephanie Fischinger, Talar Tokatlian, Kimberly M Cirelli, George Ueda, Jeffrey Copps, Torben Schiffner, Sergey Menis, Galit Alter, William R Schief, Shane Crotty, Neil P King, David Baker, Guido Silvestri, Andrew B Ward, Darrell J Irvine | NPJ Vaccines | 2020-08-05 |
| Cutaneous innate immune tolerance is mediated by epigenetic control of MAP2K3 by HDAC8/9. | Yu Sawada, Teruaki Nakatsuji, Tatsuya Dokoshi, Nikhil Nitin Kulkarni, Marc C Liggins, George Sen, Richard L Gallo | Science Immunology | 2020-08-05 |
| Selective and cross-reactive SARS-CoV-2 T cell epitopes in unexposed humans. | Jose Mateus, Alba Grifoni, Alison Tarke, John Sidney, Sydney I Ramirez, Jennifer M Dan, Zoe C Burger, Stephen A Rawlings, Davey M Smith, Elizabeth Phillips, Simon Mallal, Marshall Lammers, Paul Rubiro, Lorenzo Quiambao, Aaron Sutherland, Esther Dawen Yu, Ricardo da Silva Antunes, Jason Greenbaum, April Frazier, Alena J Markmann, Lakshmanane Premkumar, Aravinda de Silva, Bjoern Peters, Shane Crotty, Alessandro Sette, Daniela Weiskopf | Science (New York, N.Y.) | 2020-08-04 |
| Linking metabolic phenotypes to pathogenic traits among "Candidatus Liberibacter asiaticus" and its hosts. | Cristal Zuñiga, Beth Peacock, Bo Liang, Greg McCollum, Sonia C Irigoyen, Diego Tec-Campos, Clarisse Marotz, Nien-Chen Weng, Alejandro Zepeda, Georgios Vidalakis, Kranthi K Mandadi, James Borneman, Karsten Zengler | NPJ Systems Biology And Applications | 2020-08-04 |
| Deficiency of Intestinal α1-2-Fucosylation Exacerbates Ethanol-Induced Liver Disease in Mice. | Rongrong Zhou, Cristina Llorente, Jinling Cao, Bei Gao, Yi Duan, Lu Jiang, Yanhan Wang, Vipin Kumar, Peter Stärkel, Lars Bode, Xuegong Fan, Bernd Schnabl | Alcoholism, Clinical And Experimental Research | 2020-08-02 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Microbiology Spectrum | 2020-08-02 |
| Women Physicians and the COVID-19 Pandemic. | Linda Brubaker | JAMA | 2020-08-01 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Journal Of Microbiology & Biology Education | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | MSystems | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | MSphere | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Microbiology And Molecular Biology Reviews : MMBR | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | MBio | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Microbiology Resource Announcements | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Clinical Microbiology Reviews | 2020-07-31 |
| Association of HIV serostatus and metabolic syndrome with neurobehavioral disturbances. | Caitlin N Pope, Jessica L Montoya, Elizabeth Vasquez, Josué Pérez-Santiago, Ronald Ellis, J Allen McCutchan, Dilip V Jeste, David J Moore, María J Marquine | Journal Of Neurovirology | 2020-07-30 |
| Synthetic microbial communities of heterotrophs and phototrophs facilitate sustainable growth. | Cristal Zuñiga, Tingting Li, Michael T Guarnieri, Jackson P Jenkins, Chien-Ting Li, Kerem Bingol, Young-Mo Kim, Michael J Betenbaugh, Karsten Zengler | Nature Communications | 2020-07-30 |
| Microbiome and Metagenome Analyses of a Closed Habitat during Human Occupation. | Ganesh Babu Malli Mohan, Ceth W Parker, Camilla Urbaniak, Nitin K Singh, Anthony Hood, Jeremiah J Minich, Rob Knight, Michelle Rucker, Kasthuri Venkateswaran | MSystems | 2020-07-28 |
| Marine microbial natural products: the evolution of a new field of science. | William Bill Fenical | The Journal Of Antibiotics | 2020-07-27 |
| Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity. | Patrick V Phaneuf, James T Yurkovich, David Heckmann, Muyao Wu, Troy E Sandberg, Zachary A King, Justin Tan, Bernhard O Palsson, Adam M Feist | BMC Genomics | 2020-07-25 |
| MicroRNAs and Their Targetomes in Tumor-Immune Communication. | Sunglim Cho, Jesse W Tai, Li-Fan Lu | Cancers | 2020-07-24 |
| Six novel species of the obligate marine actinobacterium , sp. nov., sp. nov., sp. nov., sp. nov., sp. nov. and sp. nov., and emended description of the genus . | Brenda Román-Ponce, Natalie Millán-Aguiñaga, Dulce Guillen-Matus, Alexander B Chase, Joape G M Ginigini, Katy Soapi, Klaus D Feussner, Paul R Jensen, Martha E Trujillo | International Journal Of Systematic And Evolutionary Microbiology | 2020-07-23 |
| Facing the Change Together: Reflections of Coping and Resilience From American Geriatric Psychiatrists During COVID-19. | Carmen Black Parker, Malcolm P Forbes, Ipsit V Vahia, Brent P Forester, Dilip V Jeste, Charles F Reynolds | The American Journal Of Geriatric Psychiatry : Official Journal Of The American Association For Geriatric Psychiatry | 2020-07-23 |
| Facing the change together: reflections of coping and resilience from American geriatric psychiatrists during COVID-19. | Carmen Black Parker, Malcolm P Forbes, Ipsit V Vahia, Brent P Forester, Dilip V Jeste, Charles F Reynolds | International Psychogeriatrics | 2020-07-23 |
| Biomarkers for the Discrimination of Acute Kawasaki Disease From Infections in Childhood. | Judith Zandstra, Annemarie van de Geer, Michael W T Tanck, Diana van Stijn-Bringas Dimitriades, Cathelijn E M Aarts, Sanne M Dietz, Robin van Bruggen, Nina A Schweintzger, Werner Zenz, Marieke Emonts, Dace Zavadska, Marko Pokorn, Effua Usuf, Henriette A Moll, Luregn J Schlapbach, Enitan D Carrol, Stephane Paulus, Maria Tsolia, Colin Fink, Shunmay Yeung, Chisato Shimizu, Adriana Tremoulet, Rachel Galassini, Victoria J Wright, Federico Martinón-Torres, Jethro Herberg, Jane Burns, Michael Levin, Taco W Kuijpers, | Frontiers In Pediatrics | 2020-07-22 |
| Independent component analysis of E. coli's transcriptome reveals the cellular processes that respond to heterologous gene expression. | Justin Tan, Anand V Sastry, Karoline S Fremming, Sara P Bjørn, Alexandra Hoffmeyer, Sangwoo Seo, Bjørn G Voldborg, Bernhard O Palsson | Metabolic Engineering | 2020-07-22 |
| Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals. | Joonatan Palmu, Aaro Salosensaari, Aki S Havulinna, Susan Cheng, Michael Inouye, Mohit Jain, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Erkki Vartiainen, Tiina Laatikainen, Pekka Jousilahti, Veikko Salomaa, Rob Knight, Leo Lahti, Teemu J Niiranen | Journal Of The American Heart Association | 2020-07-21 |
| Virulence as a Side Effect of Interspecies Interaction in Coral Pathogens. | Esther Rubio-Portillo, Ana B Martin-Cuadrado, Andrés M Caraballo-Rodríguez, Forest Rohwer, Pieter C Dorrestein, Josefa Antón | MBio | 2020-07-21 |
| T4 Pili Promote Colonization and Immune Evasion Phenotypes of Nonencapsulated M4 Streptococcus pyogenes. | Yi-Hsuan Chen, Shao-Hui Li, Yao-Cheng Yang, Shu-Hao Hsu, Victor Nizet, Yung-Chi Chang | MBio | 2020-07-21 |
| Changes in the fecal bacterial microbiota associated with disease severity in alcoholic hepatitis patients. | Sonja Lang, Bradley Fairfied, Bei Gao, Yi Duan, Xinlian Zhang, Derrick E Fouts, Bernd Schnabl | Gut Microbes | 2020-07-20 |
| Antibiotics and Innate Immunity: A Cooperative Effort Toward the Successful Treatment of Infections. | Andrew Berti, Warren Rose, Victor Nizet, George Sakoulas | Open Forum Infectious Diseases | 2020-07-20 |
| In Reply: Navigating personal risk in rhinologic surgery during the COVID-19 pandemic. | Adam S DeConde, Carol H Yan, Robert P DeConde | International Forum Of Allergy & Rhinology | 2020-07-19 |
| Pathogen Interference: Targeting Virulence Factors to Tackle Intracellular Microbes. | Michael H Lee, Sean-Paul Nuccio, Manuela Raffatellu | Cell Chemical Biology | 2020-07-18 |
| Evolutionary stalling and a limit on the power of natural selection to improve a cellular module. | Sandeep Venkataram, Ross Monasky, Shohreh H Sikaroodi, Sergey Kryazhimskiy, Betul Kacar | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-07-17 |
| Transcriptomic Profiling Identifies Novel Hepatic and Intestinal Genes Following Chronic Plus Binge Ethanol Feeding in Mice. | Lu Jiang, Huikuan Chu, Bei Gao, Sonja Lang, Yanhan Wang, Yi Duan, Bernd Schnabl | Digestive Diseases And Sciences | 2020-07-15 |
| Redefining fundamental concepts of transcription initiation in bacteria. | Citlalli Mejía-Almonte, Stephen J W Busby, Joseph T Wade, Jacques van Helden, Adam P Arkin, Gary D Stormo, Karen Eilbeck, Bernhard O Palsson, James E Galagan, Julio Collado-Vides | Nature Reviews. Genetics | 2020-07-14 |
| Telomere-to-telomere assembly of a complete human X chromosome. | Karen H Miga, Sergey Koren, Arang Rhie, Mitchell R Vollger, Ariel Gershman, Andrey Bzikadze, Shelise Brooks, Edmund Howe, David Porubsky, Glennis A Logsdon, Valerie A Schneider, Tamara Potapova, Jonathan Wood, William Chow, Joel Armstrong, Jeanne Fredrickson, Evgenia Pak, Kristof Tigyi, Milinn Kremitzki, Christopher Markovic, Valerie Maduro, Amalia Dutra, Gerard G Bouffard, Alexander M Chang, Nancy F Hansen, Amy B Wilfert, Françoise Thibaud-Nissen, Anthony D Schmitt, Jon-Matthew Belton, Siddarth Selvaraj, Megan Y Dennis, Daniela C Soto, Ruta Sahasrabudhe, Gulhan Kaya, Josh Quick, Nicholas J Loman, Nadine Holmes, Matthew Loose, Urvashi Surti, Rosa Ana Risques, Tina A Graves Lindsay, Robert Fulton, Ira Hall, Benedict Paten, Kerstin Howe, Winston Timp, Alice Young, James C Mullikin, Pavel A Pevzner, Jennifer L Gerton, Beth A Sullivan, Evan E Eichler, Adam M Phillippy | Nature | 2020-07-14 |
| Shaping an Endospore: Architectural Transformations During Sporulation. | Kanika Khanna, Javier Lopez-Garrido, Kit Pogliano | Annual Review Of Microbiology | 2020-07-13 |
| Breastmilk Feeding Practices Are Associated with the Co-Occurrence of Bacteria in Mothers' Milk and the Infant Gut: the CHILD Cohort Study. | Kelsey Fehr, Shirin Moossavi, Hind Sbihi, Rozlyn C T Boutin, Lars Bode, Bianca Robertson, Chloe Yonemitsu, Catherine J Field, Allan B Becker, Piushkumar J Mandhane, Malcolm R Sears, Ehsan Khafipour, Theo J Moraes, Padmaja Subbarao, B Brett Finlay, Stuart E Turvey, Meghan B Azad | Cell Host & Microbe | 2020-07-10 |
| Metagenome Data on Intestinal Phage-Bacteria Associations Aids the Development of Phage Therapy against Pathobionts. | Kosuke Fujimoto, Yasumasa Kimura, Masaki Shimohigoshi, Takeshi Satoh, Shintaro Sato, Georg Tremmel, Miho Uematsu, Yunosuke Kawaguchi, Yuki Usui, Yoshiko Nakano, Tetsuya Hayashi, Koji Kashima, Yoshikazu Yuki, Kiyoshi Yamaguchi, Yoichi Furukawa, Masanori Kakuta, Yutaka Akiyama, Rui Yamaguchi, Sheila E Crowe, Peter B Ernst, Satoru Miyano, Hiroshi Kiyono, Seiya Imoto, Satoshi Uematsu | Cell Host & Microbe | 2020-07-10 |
| Pre-existing immunity to SARS-CoV-2: the knowns and unknowns. | Alessandro Sette, Shane Crotty | Nature Reviews. Immunology | 2020-07-09 |
| Intestinal Virome Signature Associated With Severity of Nonalcoholic Fatty Liver Disease. | Sonja Lang, Münevver Demir, Anna Martin, Lu Jiang, Xinlian Zhang, Yi Duan, Bei Gao, Hilmar Wisplinghoff, Philipp Kasper, Christoph Roderburg, Frank Tacke, Hans-Michael Steffen, Tobias Goeser, Juan G Abraldes, Xin M Tu, Rohit Loomba, Peter Stärkel, David Pride, Derrick E Fouts, Bernd Schnabl | Gastroenterology | 2020-07-09 |
| Impact of insertion sequences on convergent evolution of Shigella species. | Jane Hawkey, Jonathan M Monk, Helen Billman-Jacobe, Bernhard Palsson, Kathryn E Holt | PLoS Genetics | 2020-07-09 |
| Daptomycin for Pediatric Gram-Positive Acute Hematogenous Osteomyelitis. | John S Bradley, Antonio C Arrieta, Valeri A Digtyar, Myra W Popejoy, Anjana Grandhi, Paula Bokesch, Ellie Hershberger, Mary Beth Dorr, Christopher M Tan, Yoshihiko Murata, Dominik J Wolf, Mekki Bensaci | The Pediatric Infectious Disease Journal | 2020-07-09 |
| Microbial Products and Metabolites Contributing to Alcohol-Related Liver Disease. | Bei Gao, Atoosa Emami, Shilpa Nath, Bernd Schnabl | Molecular Nutrition & Food Research | 2020-07-07 |
| Site-Directed Mutagenesis of Large Biosynthetic Gene Clusters Oligonucleotide Recombineering and CRISPR/Cas9 Targeting. | Jia Jia Zhang, Bradley S Moore | ACS Synthetic Biology | 2020-07-06 |
| Distance, diffusion and the role of social media in a time of COVID contagion. | Sara Moukarzel, Miguel Del Fresno, Lars Bode, Alan J Daly | Maternal & Child Nutrition | 2020-07-06 |
| Repurposed drugs block toxin-driven platelet clearance by the hepatic Ashwell-Morell receptor to clear bacteremia. | Josh Sun, Satoshi Uchiyama, Joshua Olson, Yosuke Morodomi, Ingrid Cornax, Nao Ando, Yohei Kohno, May M T Kyaw, Bernice Aguilar, Nina M Haste, Sachiko Kanaji, Taisuke Kanaji, Warren E Rose, George Sakoulas, Jamey D Marth, Victor Nizet | Science Translational Medicine | 2020-07-05 |
| Staphylococcus epidermidis protease EcpA can be a deleterious component of the skin microbiome in atopic dermatitis. | Laura Cau, Michael R Williams, Anna M Butcher, Teruaki Nakatsuji, Jeffrey S Kavanaugh, Joyce Y Cheng, Faiza Shafiq, Kyle Higbee, Tissa R Hata, Alexander R Horswill, Richard L Gallo | The Journal Of Allergy And Clinical Immunology | 2020-07-04 |
| Detection of Neisseria gonorrhoeae from Joint Aspirate by Metagenomic Sequencing in Disseminated Gonococcal Infection. | Betial Asmerom, Ian Drobish, Britanny Winckler, Leslie Chiang, Lauge Farnaes, Julia Beauchamp-Walters, John S Bradley, Nanda Ramchandar | Journal Of The Pediatric Infectious Diseases Society | 2020-07-03 |
| Revealing 29 sets of independently modulated genes in , their regulators, and role in key physiological response. | Saugat Poudel, Hannah Tsunemoto, Yara Seif, Anand V Sastry, Richard Szubin, Sibei Xu, Henrique Machado, Connor A Olson, Amitesh Anand, Joe Pogliano, Victor Nizet, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-07-02 |
| A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis. | Tae Gyu Oh, Susy M Kim, Cyrielle Caussy, Ting Fu, Jian Guo, Shirin Bassirian, Seema Singh, Egbert V Madamba, Ricki Bettencourt, Lisa Richards, Ruth T Yu, Annette R Atkins, Tao Huan, David A Brenner, Claude B Sirlin, Michael Downes, Ronald M Evans, Rohit Loomba | Cell Metabolism | 2020-06-30 |
| Reply. | Ashraf S Harahsheh, Nagib Dahdah, Jane W Newburger, Michael A Portman, Robert Tulloh, Brian W McCrindle, Rolando Cimaz, Jane C Burns | The Journal Of Pediatrics | 2020-06-30 |
| Inflammation in Mental Disorders: Is the Microbiota the Missing Link? | Sophie Ouabbou, Ying He, Keith Butler, Ming Tsuang | Neuroscience Bulletin | 2020-06-27 |
| Translating gene drive science to promote linguistic diversity in community and stakeholder engagement. | Cynthia Cheung, Stephanie Gamez, Rebeca Carballar-Lejarazú, Victor Ferman, Váleri N Vásquez, Gerard Terradas, Judy Ishikawa, Cynthia E Schairer, Ethan Bier, John M Marshall, Anthony A James, Omar S Akbari, Cinnamon S Bloss | Global Public Health | 2020-06-26 |
| Synoviocyte-targeted therapy synergizes with TNF inhibition in arthritis reversal. | Mattias N D Svensson, Martina Zoccheddu, Shen Yang, Gyrid Nygaard, Christian Secchi, Karen M Doody, Kamil Slowikowski, Fumitaka Mizoguchi, Frances Humby, Rebecca Hands, Eugenio Santelli, Cristiano Sacchetti, Kuninobu Wakabayashi, Dennis J Wu, Christopher Barback, Rizi Ai, Wei Wang, Gary P Sims, Piotr Mydel, Tsuyoshi Kasama, David L Boyle, Francesco Galimi, David Vera, Michel L Tremblay, Soumya Raychaudhuri, Michael B Brenner, Gary S Firestein, Costantino Pitzalis, Anna-Karin H Ekwall, Stephanie M Stanford, Nunzio Bottini | Science Advances | 2020-06-26 |
| Intestinal permeability, microbial translocation, changes in duodenal and fecal microbiota, and their associations with alcoholic liver disease progression in humans. | Luca Maccioni, Bei Gao, Sophie Leclercq, Boris Pirlot, Yves Horsmans, Philippe De Timary, Isabelle Leclercq, Derrick Fouts, Bernd Schnabl, Peter Stärkel | Gut Microbes | 2020-06-26 |
| Sierra Nevada mountain lake microbial communities are structured by temperature, resources and geographic location. | Marika A Schulhof, Andrew E Allen, Eric E Allen, Natalie Mladenov, John P McCrow, Natalie T Jones, Jessica Blanton, Hamanda B Cavalheri, Drishti Kaul, Celia C Symons, Jonathan B Shurin | Molecular Ecology | 2020-06-24 |
| In-Hospital Use of Statins Is Associated with a Reduced Risk of Mortality among Individuals with COVID-19. | Xiao-Jing Zhang, Juan-Juan Qin, Xu Cheng, Lijun Shen, Yan-Ci Zhao, Yufeng Yuan, Fang Lei, Ming-Ming Chen, Huilin Yang, Liangjie Bai, Xiaohui Song, Lijin Lin, Meng Xia, Feng Zhou, Jianghua Zhou, Zhi-Gang She, Lihua Zhu, Xinliang Ma, Qingbo Xu, Ping Ye, Guohua Chen, Liming Liu, Weiming Mao, Youqin Yan, Bing Xiao, Zhigang Lu, Gang Peng, Mingyu Liu, Jun Yang, Luyu Yang, Changjiang Zhang, Haofeng Lu, Xigang Xia, Daihong Wang, Xiaofeng Liao, Xiang Wei, Bing-Hong Zhang, Xin Zhang, Juan Yang, Guang-Nian Zhao, Peng Zhang, Peter P Liu, Rohit Loomba, Yan-Xiao Ji, Jiahong Xia, Yibin Wang, Jingjing Cai, Jiao Guo, Hongliang Li | Cell Metabolism | 2020-06-24 |
| A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes. | Sheila Podell, Jessica M Blanton, Aaron Oliver, Michelle A Schorn, Vinayak Agarwal, Jason S Biggs, Bradley S Moore, Eric E Allen | Microbiome | 2020-06-23 |
| High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy. | Ruma Raghuvanshi, Karla Vasco, Yoshiki Vázquez-Baeza, Lingjing Jiang, James T Morton, Danxun Li, Antonio Gonzalez, Lindsay DeRight Goldasich, Gregory Humphrey, Gail Ackermann, Austin D Swafford, Douglas Conrad, Rob Knight, Pieter C Dorrestein, Robert A Quinn | MSystems | 2020-06-23 |
| Bcl-6 is the nexus transcription factor of T follicular helper cells via repressor-of-repressor circuits. | Jinyong Choi, Huitian Diao, Caterina E Faliti, Jacquelyn Truong, Meghan Rossi, Simon Bélanger, Bingfei Yu, Ananda W Goldrath, Matthew E Pipkin, Shane Crotty | Nature Immunology | 2020-06-22 |
| Rationale and design of the Kidney Precision Medicine Project. | Ian H de Boer, Charles E Alpers, Evren U Azeloglu, Ulysses G J Balis, Jonathan M Barasch, Laura Barisoni, Kristina N Blank, Andrew S Bomback, Keith Brown, Pierre C Dagher, Ashveena L Dighe, Michael T Eadon, Tarek M El-Achkar, Joseph P Gaut, Nir Hacohen, Yongqun He, Jeffrey B Hodgin, Sanjay Jain, John A Kellum, Krzysztof Kiryluk, Richard Knight, Zoltan G Laszik, Chrysta Lienczewski, Laura H Mariani, Robyn L McClelland, Steven Menez, Dennis G Moledina, Sean D Mooney, John F O'Toole, Paul M Palevsky, Chirag R Parikh, Emilio D Poggio, Sylvia E Rosas, Matthew R Rosengart, Minnie M Sarwal, Jennifer A Schaub, John R Sedor, Kumar Sharma, Becky Steck, Robert D Toto, Olga G Troyanskaya, Katherine R Tuttle, Miguel A Vazquez, Sushrut S Waikar, Kayleen Williams, Francis Perry Wilson, Kun Zhang, Ravi Iyengar, Matthias Kretzler, Jonathan Himmelfarb, | Kidney International | 2020-06-22 |
| Fermentable fiber-induced hepatocellular carcinoma in mice recapitulates gene signatures found in human liver cancer. | Darshan Shimoga Chandrashekar, Rachel M Golonka, Beng San Yeoh, David J Gonzalez, Mathias Heikenwälder, Andrew T Gerwirtz, Sooryanarayana Varambally, Matam Vijay-Kumar | PloS One | 2020-06-19 |
| Functional Microbiomics Reveals Alterations of the Gut Microbiome and Host Co-Metabolism in Patients With Alcoholic Hepatitis. | Bei Gao, Yi Duan, Sonja Lang, Dinesh Barupal, Tsung-Chin Wu, Luis Valdiviez, Bryan Roberts, Ying Yng Choy, Tong Shen, Gregory Byram, Ying Zhang, Sili Fan, Benjamin Wancewicz, Yan Shao, Kevin Vervier, Yanhan Wang, Rongrong Zhou, Lu Jiang, Shilpa Nath, Rohit Loomba, Juan G Abraldes, Ramon Bataller, Xin M Tu, Peter Stärkel, Trevor D Lawley, Oliver Fiehn, Bernd Schnabl | Hepatology Communications | 2020-06-19 |
| Modulating the quantity of HIV Env-specific CD4 T cell help promotes rare B cell responses in germinal centers. | Jeong Hyun Lee, Joyce K Hu, Erik Georgeson, Catherine Nakao, Bettina Groschel, Thamotharampillai Dileepan, Marc K Jenkins, Gregory Seumois, Pandurangan Vijayanand, William R Schief, Shane Crotty | The Journal Of Experimental Medicine | 2020-06-17 |
| Streptococcus pyogenes upregulates arginine catabolism to exert its pathogenesis on the skin surface. | Yujiro Hirose, Masaya Yamaguchi, Tomoko Sumitomo, Masanobu Nakata, Tomoki Hanada, Daisuke Okuzaki, Daisuke Motooka, Yasushi Mori, Hiroshi Kawasaki, Alison Coady, Satoshi Uchiyama, Masanobu Hiraoka, Raymond H Zurich, Masayuki Amagai, Victor Nizet, Shigetada Kawabata | Cell Reports | 2020-06-17 |
| Harnessing Activin A Adjuvanticity to Promote Antibody Responses to BG505 HIV Envelope Trimers. | Diane G Carnathan, Kirti Kaushik, Ali H Ellebedy, Chiamaka A Enemuo, Etse H Gebru, Pallavi Dhadvai, Mohammed Ata Ur Rasheed, Matthias G Pauthner, Gabriel Ozorowski, Rafi Ahmed, Dennis R Burton, Andrew B Ward, Guido Silvestri, Shane Crotty, Michela Locci | Frontiers In Immunology | 2020-06-16 |
| Evaluation of SARS-CoV-2 in Breastmilk from 18 Infected Women. | Christina D Chambers, Paul Krogstad, Kerri Bertrand, Deisy Contreras, Nicole H Tobin, Lars Bode, Grace M Aldrovandi | MedRxiv : The Preprint Server For Health Sciences | 2020-06-16 |
| Isolation of potent SARS-CoV-2 neutralizing antibodies and protection from disease in a small animal model. | Thomas F Rogers, Fangzhu Zhao, Deli Huang, Nathan Beutler, Alison Burns, Wan-Ting He, Oliver Limbo, Chloe Smith, Ge Song, Jordan Woehl, Linlin Yang, Robert K Abbott, Sean Callaghan, Elijah Garcia, Jonathan Hurtado, Mara Parren, Linghang Peng, Sydney Ramirez, James Ricketts, Michael J Ricciardi, Stephen A Rawlings, Nicholas C Wu, Meng Yuan, Davey M Smith, David Nemazee, John R Teijaro, James E Voss, Ian A Wilson, Raiees Andrabi, Bryan Briney, Elise Landais, Devin Sok, Joseph G Jardine, Dennis R Burton | Science (New York, N.Y.) | 2020-06-15 |
| Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information. | Zhoutao Chen, Long Pham, Tsai-Chin Wu, Guoya Mo, Yu Xia, Peter L Chang, Devin Porter, Tan Phan, Huu Che, Hao Tran, Vikas Bansal, Justin Shaffer, Pedro Belda-Ferre, Greg Humphrey, Rob Knight, Pavel Pevzner, Son Pham, Yong Wang, Ming Lei | Genome Research | 2020-06-15 |
| CBASS Immunity Uses CARF-Related Effectors to Sense 3'-5'- and 2'-5'-Linked Cyclic Oligonucleotide Signals and Protect Bacteria from Phage Infection. | Brianna Lowey, Aaron T Whiteley, Alexander F A Keszei, Benjamin R Morehouse, Ian T Mathews, Sadie P Antine, Victor J Cabrera, Dmitry Kashin, Percy Niemann, Mohit Jain, Frank Schwede, John J Mekalanos, Sichen Shao, Amy S Y Lee, Philip J Kranzusch | Cell | 2020-06-15 |
| The selective PPAR-delta agonist seladelpar reduces ethanol-induced liver disease by restoring gut barrier function and bile acid homeostasis in mice. | Huikuan Chu, Lu Jiang, Bei Gao, Nagsen Gautam, Jawaher A Alamoudi, Sonja Lang, Yanhan Wang, Yi Duan, Yazen Alnouti, Edward E Cable, Bernd Schnabl | Translational Research : The Journal Of Laboratory And Clinical Medicine | 2020-06-15 |
| Shielding and Beyond: The Roles of Glycans in SARS-CoV-2 Spike Protein. | Lorenzo Casalino, Zied Gaieb, Jory A Goldsmith, Christy K Hjorth, Abigail C Dommer, Aoife M Harbison, Carl A Fogarty, Emilia P Barros, Bryn C Taylor, Jason S McLellan, Elisa Fadda, Rommie E Amaro | BioRxiv : The Preprint Server For Biology | 2020-06-11 |
| Efficacy of Antigonococcal CMP-Nonulosonate Therapeutics Require Cathelicidins. | Sunita Gulati, Ian C Schoenhofen, Theresa Lindhout-Djukic, Lisa A Lewis, Iesha Y Moustafa, Sudeshna Saha, Bo Zheng, Nancy Nowak, Peter A Rice, Ajit Varki, Sanjay Ram | The Journal Of Infectious Diseases | 2020-06-10 |
| Clinical Characteristics of 58 Children With a Pediatric Inflammatory Multisystem Syndrome Temporally Associated With SARS-CoV-2. | Elizabeth Whittaker, Alasdair Bamford, Julia Kenny, Myrsini Kaforou, Christine E Jones, Priyen Shah, Padmanabhan Ramnarayan, Alain Fraisse, Owen Miller, Patrick Davies, Filip Kucera, Joe Brierley, Marilyn McDougall, Michael Carter, Adriana Tremoulet, Chisato Shimizu, Jethro Herberg, Jane C Burns, Hermione Lyall, Michael Levin, | JAMA | 2020-06-09 |
| Persistent Smell Loss Following Undetectable SARS-CoV-2. | Carol H Yan, Divya P Prajapati, Michele L Ritter, Adam S DeConde | Otolaryngology--head And Neck Surgery : Official Journal Of American Academy Of Otolaryngology-Head And Neck Surgery | 2020-06-09 |
| Bacterial communities associated with cell phones and shoes. | David A Coil, Russell Y Neches, Jenna M Lang, Guillaume Jospin, Wendy E Brown, Darlene Cavalier, Jarrad Hampton-Marcell, Jack A Gilbert, Jonathan A Eisen | PeerJ | 2020-06-09 |
| Spatial Compartmentalization of the Microbiome between the Lumen and Crypts Is Lost in the Murine Cecum following the Process of Surgery, Including Overnight Fasting and Exposure to Antibiotics. | Alexander Zaborin, Beatriz Penalver Bernabe, Robert Keskey, Naseer Sangwan, Sanjiv Hyoju, Neil Gottel, Jack A Gilbert, Olga Zaborina, John C Alverdy | MSystems | 2020-06-09 |
| Reply to: Self-reported olfactory loss in COVID-19: is it really a favorable prognostic factor? | Carol H Yan, Farhoud Faraji, Adam S DeConde | International Forum Of Allergy & Rhinology | 2020-06-08 |
| Temporal variations in bacterial community diversity and composition throughout intensive care unit renovations. | Jessica Chopyk, Kevan Akrami, Tovia Bavly, Ji H Shin, Leila K Schwanemann, Melissa Ly, Richa Kalia, Ying Xu, Scott T Kelley, Atul Malhotra, Francesca J Torriani, Daniel A Sweeney, David T Pride | Microbiome | 2020-06-08 |
| Tuning the Innate Immune Response to Cyclic Dinucleotides by Using Atomic Mutagenesis. | Yao Li, Andrea Fin, Alexander R Rovira, Yichi Su, Andrew B Dippel, Jonathan Andrés Valderrama, Angelica M Riestra, Victor Nizet, Ming C Hammond, Yitzhak Tor | Chembiochem : A European Journal Of Chemical Biology | 2020-06-08 |
| Self-reported olfactory loss associates with outpatient clinical course in COVID-19. | Carol H Yan, Farhoud Faraji, Divya P Prajapati, Benjamin T Ostrander, Adam S DeConde | International Forum Of Allergy & Rhinology | 2020-06-07 |
| Microbial Synthesis of Human-Hormone Melatonin at Gram Scales. | Hao Luo, Konstantin Schneider, Ulla Christensen, Yang Lei, Markus Herrgard, Bernhard Ø Palsson | ACS Synthetic Biology | 2020-06-05 |
| Human milk fungi: environmental determinants and inter-kingdom associations with milk bacteria in the CHILD Cohort Study. | Shirin Moossavi, Kelsey Fehr, Hooman Derakhshani, Hind Sbihi, Bianca Robertson, Lars Bode, Jeffrey Brook, Stuart E Turvey, Theo J Moraes, Allan B Becker, Piushkumar J Mandhane, Malcolm R Sears, Ehsan Khafipour, Padmaja Subbarao, Meghan B Azad | BMC Microbiology | 2020-06-05 |
| Comparative Genomics Determines Strain-Dependent Secondary Metabolite Production in Strains. | Woori Kim, Namil Lee, Soonkyu Hwang, Yongjae Lee, Jihun Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | Biomolecules | 2020-06-05 |
| Earth microbial co-occurrence network reveals interconnection pattern across microbiomes. | Bin Ma, Yiling Wang, Shudi Ye, Shan Liu, Erinne Stirling, Jack A Gilbert, Karoline Faust, Rob Knight, Janet K Jansson, Cesar Cardona, Lisa Röttjers, Jianming Xu | Microbiome | 2020-06-04 |
| Paroxetine Administration Affects Microbiota and Bile Acid Levels in Mice. | Frederik Dethloff, Fernando Vargas, Emmanuel Elijah, Robert Quinn, Dong Ik Park, David P Herzog, Marianne B Müller, Emily C Gentry, Rob Knight, Antonio Gonzalez, Pieter C Dorrestein, Christoph W Turck | Frontiers In Psychiatry | 2020-06-04 |
| Microbial Ecology of Atlantic Salmon (Salmo salar) Hatcheries: Impacts of the Built Environment on Fish Mucosal Microbiota. | Jeremiah J Minich, Greg D Poore, Khattapan Jantawongsri, Colin Johnston, Kate Bowie, John Bowman, Rob Knight, Barbara Nowak, Eric E Allen | Applied And Environmental Microbiology | 2020-06-02 |
| Comparative Genomics and Metabolomics in the Genus . | Daniel Männle, Shaun M K McKinnie, Shrikant S Mantri, Katharina Steinke, Zeyin Lu, Bradley S Moore, Nadine Ziemert, Leonard Kaysser | MSystems | 2020-06-02 |
| Predicting COVID-19 Incidence Using Anosmia and Other COVID-19 Symptomatology: Preliminary Analysis Using Google and Twitter. | Bharat A Panuganti, Aria Jafari, Bridget MacDonald, Adam S DeConde | Otolaryngology--head And Neck Surgery : Official Journal Of American Academy Of Otolaryngology-Head And Neck Surgery | 2020-06-02 |
| Association of chemosensory dysfunction and COVID-19 in patients presenting with influenza-like symptoms. | Carol H Yan, Farhoud Faraji, Divya P Prajapati, Christine E Boone, Adam S DeConde | International Forum Of Allergy & Rhinology | 2020-06-01 |
| A multiomic analysis of in situ coral-turf algal interactions. | Ty N F Roach, Mark Little, Milou G I Arts, Joel Huckeba, Andreas F Haas, Emma E George, Robert A Quinn, Ana G Cobián-Güemes, Douglas S Naliboff, Cynthia B Silveira, Mark J A Vermeij, Linda Wegley Kelly, Pieter C Dorrestein, Forest Rohwer | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-06-01 |
| SARS-CoV-2 and human milk: What is the evidence? | Kimberly A Lackey, Ryan M Pace, Janet E Williams, Lars Bode, Sharon M Donovan, Kirsi M Järvinen, Antti E Seppo, Daniel J Raiten, Courtney L Meehan, Mark A McGuire, Michelle K McGuire | Maternal & Child Nutrition | 2020-05-30 |
| Detecting personal microbiota signatures at artificial crime scenes. | Jarrad T Hampton-Marcell, Peter Larsen, Tifani Anton, Lauren Cralle, Naseer Sangwan, Simon Lax, Neil Gottel, Mariana Salas-Garcia, Candace Young, George Duncan, Jose V Lopez, Jack A Gilbert | Forensic Science International | 2020-05-30 |
| Modeling of nitrogen fixation and polymer production in the heterotrophic diazotroph DJ. | Diego Tec Campos, Cristal Zuñiga, Anurag Passi, John Del Toro, Juan D Tibocha-Bonilla, Alejandro Zepeda, Michael J Betenbaugh, Karsten Zengler | Metabolic Engineering Communications | 2020-05-30 |
| Targeted Depletion of Bacteria from Mixed Populations by Programmable Adhesion with Antagonistic Competitor Cells. | See-Yeun Ting, Esteban Martínez-García, Shuo Huang, Savannah K Bertolli, Katherine A Kelly, Kevin J Cutler, Elizabeth D Su, Hui Zhi, Qing Tang, Matthew C Radey, Manuela Raffatellu, S Brook Peterson, Víctor de Lorenzo, Joseph D Mougous | Cell Host & Microbe | 2020-05-28 |
| Developmental Immaturity of Siglec Receptor Expression on Neonatal Alveolar Macrophages Predisposes to Severe Group B Streptococcal Infection. | Sean J Lund, Kathryn A Patras, Jacqueline M Kimmey, Asami Yamamura, Lindsay D Butcher, Pamela G B Del Rosario, Gilberto E Hernandez, Alyssa M McCoy, Omar Lakhdari, Victor Nizet, Lawrence S Prince | IScience | 2020-05-28 |
| Permissive microbiome characterizes human subjects with a neurovascular disease cavernous angioma. | Sean P Polster, Anukriti Sharma, Ceylan Tanes, Alan T Tang, Patricia Mericko, Ying Cao, Julián Carrión-Penagos, Romuald Girard, Janne Koskimäki, Dongdong Zhang, Agnieszka Stadnik, Sharbel G Romanos, Seán B Lyne, Robert Shenkar, Kimberly Yan, Cornelia Lee, Amy Akers, Leslie Morrison, Myranda Robinson, Atif Zafar, Kyle Bittinger, Helen Kim, Jack A Gilbert, Mark L Kahn, Le Shen, Issam A Awad | Nature Communications | 2020-05-27 |
| Reducing transmission of SARS-CoV-2. | Kimberly A Prather, Chia C Wang, Robert T Schooley | Science (New York, N.Y.) | 2020-05-27 |
| Improving Quantitative Power in Digital PCR through Digital High-Resolution Melting. | April Aralar, Yixu Yuan, Kevin Chen, Yunshu Geng, Daniel Ortiz Velez, Mridu Sinha, Shelley M Lawrence, Stephanie I Fraley | Journal Of Clinical Microbiology | 2020-05-26 |
| A biochemically-interpretable machine learning classifier for microbial GWAS. | Erol S Kavvas, Laurence Yang, Jonathan M Monk, David Heckmann, Bernhard O Palsson | Nature Communications | 2020-05-22 |
| A genetic interaction map centered on cohesin reveals auxiliary factors involved in sister chromatid cohesion in . | Su Ming Sun, Amandine Batté, Mireille Elmer, Sophie C van der Horst, Tibor van Welsem, Gordon Bean, Trey Ideker, Fred van Leeuwen, Haico van Attikum | Journal Of Cell Science | 2020-05-22 |
| Interfacing gene circuits with microelectronics through engineered population dynamics. | M Omar Din, Aida Martin, Ivan Razinkov, Nicholas Csicsery, Jeff Hasty | Science Advances | 2020-05-22 |
| All major cholesterol-dependent cytolysins use glycans as cellular receptors. | Lucy K Shewell, Christopher J Day, Freda E-C Jen, Thomas Haselhorst, John M Atack, Josephine F Reijneveld, Arun Everest-Dass, David B A James, Kristina M Boguslawski, Stephan Brouwer, Christine M Gillen, Zhenyao Luo, Bostjan Kobe, Victor Nizet, Mark von Itzstein, Mark J Walker, Adrienne W Paton, James C Paton, Victor J Torres, Michael P Jennings | Science Advances | 2020-05-22 |
| Depletion of the Microbiome Alters the Recruitment of Neuronal Ensembles of Oxycodone Intoxication and Withdrawal. | Sierra Simpson, Adam Kimbrough, Brent Boomhower, Rio McLellan, Marcella Hughes, Kokila Shankar, Giordano de Guglielmo, Olivier George | ENeuro | 2020-05-21 |
| Engineering of multiple trypsin/chymotrypsin sites in Cry3A to enhance its activity against Monochamus alternatus Hope larvae. | Yajie Guo, Yafang Wang, Anthony J O'Donoghue, Zhenze Jiang, Rebeca Carballar-Lejarazú, Guanghong Liang, Xia Hu, Rong Wang, Lei Xu, Xiong Guan, Feiping Zhang, Songqing Wu | Pest Management Science | 2020-05-20 |
| Temporal, Environmental, and Biological Drivers of the Mucosal Microbiome in a Wild Marine Fish, Scomber japonicus. | Jeremiah J Minich, Semar Petrus, Julius D Michael, Todd P Michael, Rob Knight, Eric E Allen | MSphere | 2020-05-20 |
| Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals. | Alba Grifoni, Daniela Weiskopf, Sydney I Ramirez, Jose Mateus, Jennifer M Dan, Carolyn Rydyznski Moderbacher, Stephen A Rawlings, Aaron Sutherland, Lakshmanane Premkumar, Ramesh S Jadi, Daniel Marrama, Aravinda M de Silva, April Frazier, Aaron F Carlin, Jason A Greenbaum, Bjoern Peters, Florian Krammer, Davey M Smith, Shane Crotty, Alessandro Sette | Cell | 2020-05-20 |
| An anti-inflammatory isoflavone from soybean inoculated with a marine fungus C23-3. | Jing-Ming Yang, Ya-Yue Liu, Wen-Cong Yang, Xiao-Xiang Ma, Ying-Ying Nie, Evgenia Glukhov, Lena Gerwick, William H Gerwick, Xiao-Ling Lei, Yi Zhang | Bioscience, Biotechnology, And Biochemistry | 2020-05-20 |
| Therapeutic CMP-Nonulosonates against Multidrug-Resistant . | Sunita Gulati, Ian C Schoenhofen, Theresa Lindhout-Djukic, Melissa J Schur, Corinna S Landig, Sudeshna Saha, Lingquan Deng, Lisa A Lewis, Bo Zheng, Ajit Varki, Sanjay Ram | Journal Of Immunology (Baltimore, Md. : 1950) | 2020-05-20 |
| A protein kinase A-regulated network encodes short- and long-lived cellular memories. | Yanfei Jiang, Zohreh AkhavanAghdam, Yutian Li, Brian M Zid, Nan Hao | Science Signaling | 2020-05-19 |
| Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0. | Francesco Asnicar, Andrew Maltez Thomas, Francesco Beghini, Claudia Mengoni, Serena Manara, Paolo Manghi, Qiyun Zhu, Mattia Bolzan, Fabio Cumbo, Uyen May, Jon G Sanders, Moreno Zolfo, Evguenia Kopylova, Edoardo Pasolli, Rob Knight, Siavash Mirarab, Curtis Huttenhower, Nicola Segata | Nature Communications | 2020-05-19 |
| Opportunistic Invasive Infection by Group A Streptococcus During Anti-Interleukin-6 Immunotherapy. | Shyra Wilde, Katherine L Olivares, Victor Nizet, Hal M Hoffman, Suhas Radhakrishna, Christopher N LaRock | The Journal Of Infectious Diseases | 2020-05-18 |
| A Nitric Oxide-Releasing Topical Medication as a Potential Treatment Option for Atopic Dermatitis through Antimicrobial and Anti-Inflammatory Activity. | Emma Guttman-Yassky, Richard L Gallo, Ana B Pavel, Teruaki Nakatsuji, Randall Li, Ning Zhang, Elizabeth Messersmith, Tomoko Maeda-Chubachi | The Journal Of Investigative Dermatology | 2020-05-16 |
| Rapid isolation of potent SARS-CoV-2 neutralizing antibodies and protection in a small animal model. | Thomas F Rogers, Fangzhu Zhao, Deli Huang, Nathan Beutler, Alison Burns, Wan-Ting He, Oliver Limbo, Chloe Smith, Ge Song, Jordan Woehl, Linlin Yang, Robert K Abbott, Sean Callaghan, Elijah Garcia, Jonathan Hurtado, Mara Parren, Linghang Peng, James Ricketts, Michael J Ricciardi, Stephen A Rawlings, Davey M Smith, David Nemazee, John R Teijaro, James E Voss, Raiees Andrabi, Bryan Briney, Elise Landais, Devin Sok, Joseph G Jardine, Dennis R Burton | BioRxiv : The Preprint Server For Biology | 2020-05-15 |
| Key clinical research priorities for the pediatric community during the COVID-19 pandemic. | Gary J Noel, Jonathan M Davis, Octavio Ramilo, John S Bradley, Edward Connor | Pediatric Research | 2020-05-15 |
| Author Correction: A Engineered immunogen binding to alum adjuvant enhances humoral immunity. | Tyson J Moyer, Yu Kato, Wuhbet Abraham, Jason Y H Chang, Daniel W Kulp, Nicki Watson, Hannah L Turner, Sergey Menis, Robert K Abbott, Jinal N Bhiman, Mariane B Melo, Hayley A Simon, Sara Herrera-De la Mata, Shu Liang, Gregory Seumois, Yash Agarwal, Na Li, Dennis R Burton, Andrew B Ward, William R Schief, Shane Crotty, Darrell J Irvine | Nature Medicine | 2020-05-15 |
| Dynamic resource allocation drives growth under nitrogen starvation in eukaryotes. | Juan D Tibocha-Bonilla, Manish Kumar, Anne Richelle, Rubén D Godoy-Silva, Karsten Zengler, Cristal Zuñiga | NPJ Systems Biology And Applications | 2020-05-15 |
| Frequency of Dosing of Cephalexin for Oral Step-Down Therapy of Pediatric Osteoarticular Infections Caused by Methicillin-Sensitive Staphylococcus Aureus. | Nanda Ramchandar, John Arnold, Chris Cannavino, John S Bradley | The Pediatric Infectious Disease Journal | 2020-05-14 |
| Mersaquinone, A New Tetracene Derivative from the Marine-Derived sp. EG1 Exhibiting Activity against Methicillin-Resistant (MRSA). | Min Cheol Kim, Reiko Cullum, Ali M S Hebishy, Hala A Mohamed, Ahmed H I Faraag, Nehad M Salah, Mohamed S Abdelfattah, William Fenical | Antibiotics (Basel, Switzerland) | 2020-05-14 |
| Reproducible molecular networking of untargeted mass spectrometry data using GNPS. | Allegra T Aron, Emily C Gentry, Kerry L McPhail, Louis-Félix Nothias, Mélissa Nothias-Esposito, Amina Bouslimani, Daniel Petras, Julia M Gauglitz, Nicole Sikora, Fernando Vargas, Justin J J van der Hooft, Madeleine Ernst, Kyo Bin Kang, Christine M Aceves, Andrés Mauricio Caraballo-Rodríguez, Irina Koester, Kelly C Weldon, Samuel Bertrand, Catherine Roullier, Kunyang Sun, Richard M Tehan, Cristopher A Boya P, Martin H Christian, Marcelino Gutiérrez, Aldo Moreno Ulloa, Javier Andres Tejeda Mora, Randy Mojica-Flores, Johant Lakey-Beitia, Victor Vásquez-Chaves, Yilue Zhang, Angela I Calderón, Nicole Tayler, Robert A Keyzers, Fidele Tugizimana, Nombuso Ndlovu, Alexander A Aksenov, Alan K Jarmusch, Robin Schmid, Andrew W Truman, Nuno Bandeira, Mingxun Wang, Pieter C Dorrestein | Nature Protocols | 2020-05-13 |
| Presentation of the Julius M. Friedenwald Medal to Gail A. Hecht, MD, MS. | David W Hecht, Kim E Barrett | Gastroenterology | 2020-05-11 |
| T cell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers. | Prabhu S Arunachalam, Tysheena P Charles, Vineet Joag, Venkata S Bollimpelli, Madeleine K D Scott, Florian Wimmers, Samantha L Burton, Celia C Labranche, Caroline Petitdemange, Sailaja Gangadhara, Tiffany M Styles, Clare F Quarnstrom, Korey A Walter, Thomas J Ketas, Traci Legere, Pradeep Babu Jagadeesh Reddy, Sudhir Pai Kasturi, Anthony Tsai, Bertrand Z Yeung, Shakti Gupta, Mark Tomai, John Vasilakos, George M Shaw, Chil-Yong Kang, John P Moore, Shankar Subramaniam, Purvesh Khatri, David Montefiori, Pamela A Kozlowski, Cynthia A Derdeyn, Eric Hunter, David Masopust, Rama R Amara, Bali Pulendran | Nature Medicine | 2020-05-11 |
| Exposure of to Environmental Stress and Clinically Used Antibiotics Reveals Common Proteome Response among Pathogenic Mycobacteria. | Rajoana Rojony, Lia Danelishvili, Anaamika Campeau, Jacob M Wozniak, David J Gonzalez, Luiz E Bermudez | Microorganisms | 2020-05-09 |
| Sex-dependent associations between addiction-related behaviors and the microbiome in outbred rats. | Veronica L Peterson, Jerry B Richards, Paul J Meyer, Raul Cabrera-Rubio, Jordan A Tripi, Christopher P King, Oksana Polesskaya, Amelie Baud, Apurva S Chitre, Thomaz F S Bastiaanssen, Leah Solberg Woods, Fiona Crispie, Timothy G Dinan, Paul D Cotter, Abraham A Palmer, John F Cryan | EBioMedicine | 2020-05-08 |
| Transcriptome and translatome profiles of Streptomyces species in different growth phases. | Woori Kim, Soonkyu Hwang, Namil Lee, Yongjae Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | Scientific Data | 2020-05-08 |
| Comparison of metal-bound and unbound structures of aminopeptidase B proteins from Escherichia coli and Yersinia pestis. | George Minasov, Matthew R Lam, Monica Rosas-Lemus, Joanna Sławek, Magdalena Woinska, Ivan G Shabalin, Ludmilla Shuvalova, Bernhard Ø Palsson, Adam Godzik, Wladek Minor, Karla J F Satchell | Protein Science : A Publication Of The Protein Society | 2020-05-08 |
| Microbiome profile associated with malignant pleural effusion. | Samira Shojaee, Anukriti Sharma, Neil Gottel, Trinidad Sanchez, Jack A Gilbert, Najib M Rahman | PloS One | 2020-05-08 |
| Executive Summary: Therapeutic Monitoring of Vancomycin for Serious Methicillin-Resistant Staphylococcus aureus Infections: A Revised Consensus Guideline and Review of the American Society of Health-System Pharmacists, the Infectious Diseases Society of America, the Pediatric Infectious Diseases Society, and the Society of Infectious Diseases Pharmacists. | Michael J Rybak, Jennifer Le, Thomas Lodise, Donald Levine, John Bradley, Catherine Liu, Bruce Mueller, Manjunath Pai, Annie Wong-Beringer, John C Rotschafer, Keith Rodvold, Holly D Maples, Benjamin M Lomaestro | Journal Of The Pediatric Infectious Diseases Society | 2020-05-06 |
| Bladder bacterial diversity differs in continent and incontinent women: a cross-sectional study. | Travis K Price, Huaiying Lin, Xiang Gao, Krystal J Thomas-White, Evann E Hilt, Elizabeth R Mueller, Alan J Wolfe, Qunfeng Dong, Linda Brubaker | American Journal Of Obstetrics And Gynecology | 2020-05-05 |
| Missed or delayed diagnosis of Kawasaki disease during the 2019 novel coronavirus disease (COVID-19) pandemic. | Ashraf S Harahsheh, Nagib Dahdah, Jane W Newburger, Michael A Portman, Maryam Piram, Robert Tulloh, Brian W McCrindle, Sarah D de Ferranti, Rolando Cimaz, Dongngan T Truong, Jane C Burns | The Journal Of Pediatrics | 2020-05-03 |
| An update on the role of the microbiome in non-alcoholic fatty liver disease pathogenesis, diagnosis, and treatment. | Marialena Mouzaki, Rohit Loomba | Current Treatment Options In Gastroenterology | 2020-05-02 |
| A Community Letter Regarding Sharing Biomolecular Simulation Data for COVID-19. | Rommie E Amaro, Adrian J Mulholland | Journal Of Chemical Information And Modeling | 2020-05-01 |
| A SARS-CoV-2 protein interaction map reveals targets for drug repurposing. | David E Gordon, Gwendolyn M Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Kris M White, Matthew J O'Meara, Veronica V Rezelj, Jeffrey Z Guo, Danielle L Swaney, Tia A Tummino, Ruth Hüttenhain, Robyn M Kaake, Alicia L Richards, Beril Tutuncuoglu, Helene Foussard, Jyoti Batra, Kelsey Haas, Maya Modak, Minkyu Kim, Paige Haas, Benjamin J Polacco, Hannes Braberg, Jacqueline M Fabius, Manon Eckhardt, Margaret Soucheray, Melanie J Bennett, Merve Cakir, Michael J McGregor, Qiongyu Li, Bjoern Meyer, Ferdinand Roesch, Thomas Vallet, Alice Mac Kain, Lisa Miorin, Elena Moreno, Zun Zar Chi Naing, Yuan Zhou, Shiming Peng, Ying Shi, Ziyang Zhang, Wenqi Shen, Ilsa T Kirby, James E Melnyk, John S Chorba, Kevin Lou, Shizhong A Dai, Inigo Barrio-Hernandez, Danish Memon, Claudia Hernandez-Armenta, Jiankun Lyu, Christopher J P Mathy, Tina Perica, Kala Bharath Pilla, Sai J Ganesan, Daniel J Saltzberg, Ramachandran Rakesh, Xi Liu, Sara B Rosenthal, Lorenzo Calviello, Srivats Venkataramanan, Jose Liboy-Lugo, Yizhu Lin, Xi-Ping Huang, YongFeng Liu, Stephanie A Wankowicz, Markus Bohn, Maliheh Safari, Fatima S Ugur, Cassandra Koh, Nastaran Sadat Savar, Quang Dinh Tran, Djoshkun Shengjuler, Sabrina J Fletcher, Michael C O'Neal, Yiming Cai, Jason C J Chang, David J Broadhurst, Saker Klippsten, Phillip P Sharp, Nicole A Wenzell, Duygu Kuzuoglu-Ozturk, Hao-Yuan Wang, Raphael Trenker, Janet M Young, Devin A Cavero, Joseph Hiatt, Theodore L Roth, Ujjwal Rathore, Advait Subramanian, Julia Noack, Mathieu Hubert, Robert M Stroud, Alan D Frankel, Oren S Rosenberg, Kliment A Verba, David A Agard, Melanie Ott, Michael Emerman, Natalia Jura, Mark von Zastrow, Eric Verdin, Alan Ashworth, Olivier Schwartz, Christophe d'Enfert, Shaeri Mukherjee, Matt Jacobson, Harmit S Malik, Danica G Fujimori, Trey Ideker, Charles S Craik, Stephen N Floor, James S Fraser, John D Gross, Andrej Sali, Bryan L Roth, Davide Ruggero, Jack Taunton, Tanja Kortemme, Pedro Beltrao, Marco Vignuzzi, Adolfo García-Sastre, Kevan M Shokat, Brian K Shoichet, Nevan J Krogan | Nature | 2020-04-30 |
| QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data. | Mehrbod Estaki, Lingjing Jiang, Nicholas A Bokulich, Daniel McDonald, Antonio González, Tomasz Kosciolek, Cameron Martino, Qiyun Zhu, Amanda Birmingham, Yoshiki Vázquez-Baeza, Matthew R Dillon, Evan Bolyen, J Gregory Caporaso, Rob Knight | Current Protocols In Bioinformatics | 2020-04-29 |
| Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes. | Nathan Mih, Jonathan M Monk, Xin Fang, Edward Catoiu, David Heckmann, Laurence Yang, Bernhard O Palsson | BMC Bioinformatics | 2020-04-29 |
| Visualizing 'omic feature rankings and log-ratios using Qurro. | Marcus W Fedarko, Cameron Martino, James T Morton, Antonio González, Gibraan Rahman, Clarisse A Marotz, Jeremiah J Minich, Eric E Allen, Rob Knight | NAR Genomics And Bioinformatics | 2020-04-28 |
| A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria. | Jordan E Bisanz, Paola Soto-Perez, Cecilia Noecker, Alexander A Aksenov, Kathy N Lam, Grace E Kenney, Elizabeth N Bess, Henry J Haiser, Than S Kyaw, Feiqiao B Yu, Vayu M Rekdal, Connie W Y Ha, Suzanne Devkota, Emily P Balskus, Pieter C Dorrestein, Emma Allen-Vercoe, Peter J Turnbaugh | Cell Host & Microbe | 2020-04-28 |
| Encoding Membrane-Potential-Based Memory within a Microbial Community. | Chih-Yu Yang, Maja Bialecka-Fornal, Colleen Weatherwax, Joseph W Larkin, Arthur Prindle, Jintao Liu, Jordi Garcia-Ojalvo, Gürol M Süel | Cell Systems | 2020-04-27 |
| Detection of Nucleocapsid Antibody to SARS-CoV-2 is More Sensitive than Antibody to Spike Protein in COVID-19 Patients. | Peter D Burbelo, Francis X Riedo, Chihiro Morishima, Stephen Rawlings, Davey Smith, Sanchita Das, Jeffrey R Strich, Daniel S Chertow, Richard T Davey, Jeffrey I Cohen | MedRxiv : The Preprint Server For Health Sciences | 2020-04-24 |
| Functional Microbial Responses to Alcohol Abstinence in Patients With Alcohol Use Disorder. | Bei Gao, Atoosa Emami, Rongrong Zhou, Sonja Lang, Yi Duan, Yanhan Wang, Lu Jiang, Rohit Loomba, David A Brenner, Peter Stärkel, Bernd Schnabl | Frontiers In Physiology | 2020-04-24 |
| Active Delivery of VLPs Promotes Anti-Tumor Activity in a Mouse Ovarian Tumor Model. | Chao Wang, Berta Esteban Fernández de Ávila, Rodolfo Mundaca-Uribe, Miguel Angel Lopez-Ramirez, Doris E Ramírez-Herrera, Sourabh Shukla, Nicole F Steinmetz, Joseph Wang | Small (Weinheim An Der Bergstrasse, Germany) | 2020-04-24 |
| One-Day Construction of Multiplex Arrays to Harness Natural CRISPR-Cas Systems. | Robert M Cooper, Jeff Hasty | ACS Synthetic Biology | 2020-04-22 |
| Host Cathelicidin Exacerbates Group B Urinary Tract Infection. | Kathryn A Patras, Alison Coady, Priyanka Babu, Samuel R Shing, Albert D Ha, Emma Rooholfada, Stephanie L Brandt, Matthew Geriak, Richard L Gallo, Victor Nizet | MSphere | 2020-04-22 |
| Complete Genome Sequence of Strains FMAS_KW1, FMAS_KW2 and FMAS_AW1 Isolated from Leptospirosis Patients from Karawanalla and Awissawella, Sri Lanka. | Indika Senevirathna, Dinesha Jayasundara, Joshua P Lefler, Kira L Chaiboonm, Janith Warnasekara, Suneth Agampodi, Michael A Matthias, Joseph M Vinetz | Journal Of Genomics | 2020-04-22 |
| Implication of gut microbiota in the association between infant antibiotic exposure and childhood obesity and adiposity accumulation. | Ling-Wei Chen, Jia Xu, Shu E Soh, Izzuddin M Aris, Mya-Thway Tint, Peter D Gluckman, Kok Hian Tan, Lynette Pei-Chi Shek, Yap-Seng Chong, Fabian Yap, Keith M Godfrey, Jack A Gilbert, Neerja Karnani, Yung Seng Lee | International Journal Of Obesity (2005) | 2020-04-22 |
| Temporal Dynamics of the Adult Female Lower Urinary Tract Microbiota. | Travis K Price, Birte Wolff, Thomas Halverson, Roberto Limeira, Linda Brubaker, Qunfeng Dong, Elizabeth R Mueller, Alan J Wolfe | MBio | 2020-04-21 |
| Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates. | Joana Damas, Graham M Hughes, Kathleen C Keough, Corrie A Painter, Nicole S Persky, Marco Corbo, Michael Hiller, Klaus-Peter Koepfli, Andreas R Pfenning, Huabin Zhao, Diane P Genereux, Ross Swofford, Katherine S Pollard, Oliver A Ryder, Martin T Nweeia, Kerstin Lindblad-Toh, Emma C Teeling, Elinor K Karlsson, Harris A Lewin | BioRxiv : The Preprint Server For Biology | 2020-04-18 |
| Modified Sialic Acids on Mucus and Erythrocytes Inhibit Influenza A Virus Hemagglutinin and Neuraminidase Functions. | Karen N Barnard, Brynn K Alford-Lawrence, David W Buchholz, Brian R Wasik, Justin R LaClair, Hai Yu, Rebekah Honce, Stefan Ruhl, Petar Pajic, Erin K Daugherity, Xi Chen, Stacey L Schultz-Cherry, Hector C Aguilar, Ajit Varki, Colin R Parrish | Journal Of Virology | 2020-04-16 |
| Have incidence rates of liver cancer peaked in the United States? | Jessica L Petrick, Andrea A Florio, Rohit Loomba, Katherine A McGlynn | Cancer | 2020-04-15 |
| Epithelial transport in digestive diseases: mice, monolayers, and mechanisms. | Kim E Barrett | American Journal Of Physiology. Cell Physiology | 2020-04-15 |
| Sensitivity in Detection of Antibodies to Nucleocapsid and Spike Proteins of Severe Acute Respiratory Syndrome Coronavirus 2 in Patients With Coronavirus Disease 2019. | Peter D Burbelo, Francis X Riedo, Chihiro Morishima, Stephen Rawlings, Davey Smith, Sanchita Das, Jeffrey R Strich, Daniel S Chertow, Richard T Davey, Jeffrey I Cohen | The Journal Of Infectious Diseases | 2020-04-14 |
| How Neutrophils Meet Their End. | Shelley M Lawrence, Ross Corriden, Victor Nizet | Trends In Immunology | 2020-04-14 |
| Are we facing a crashing wave of neuropsychiatric sequelae of COVID-19? Neuropsychiatric symptoms and potential immunologic mechanisms. | Emily A Troyer, Jordan N Kohn, Suzi Hong | Brain, Behavior, And Immunity | 2020-04-13 |
| Genetically engineered control of phenotypic structure in microbial colonies. | Philip Bittihn, Andriy Didovyk, Lev S Tsimring, Jeff Hasty | Nature Microbiology | 2020-04-13 |
| Enhanced Characterization of Drug Metabolism and the Influence of the Intestinal Microbiome: A Pharmacokinetic, Microbiome, and Untargeted Metabolomics Study. | Alan K Jarmusch, Alison Vrbanac, Jeremiah D Momper, Joseph D Ma, Maher Alhaja, Marlon Liyanage, Rob Knight, Pieter C Dorrestein, Shirley M Tsunoda | Clinical And Translational Science | 2020-04-13 |
| SARS-CoV-2 and human milk: what is the evidence? | Kimberly A Lackey, Ryan M Pace, Janet E Williams, Lars Bode, Sharon M Donovan, Kirsi M Järvinen, Antti E Seppo, Daniel J Raiten, Courtney L Meehan, Mark A McGuire, Michelle K McGuire | MedRxiv : The Preprint Server For Health Sciences | 2020-04-11 |
| Clinical Best Practice Advice for Hepatology and Liver Transplant Providers During the COVID-19 Pandemic: AASLD Expert Panel Consensus Statement. | Oren K Fix, Bilal Hameed, Robert J Fontana, Ryan M Kwok, Brendan M McGuire, David C Mulligan, Daniel S Pratt, Mark W Russo, Michael L Schilsky, Elizabeth C Verna, Rohit Loomba, David E Cohen, Jorge A Bezerra, K Rajender Reddy, Raymond T Chung | Hepatology (Baltimore, Md.) | 2020-04-11 |
| The Systems Biology of Drug Metabolizing Enzymes and Transporters: Relevance to Quantitative Systems Pharmacology. | Sanjay K Nigam, Kevin T Bush, Vibha Bhatnagar, Samuel M Poloyac, Jeremiah D Momper | Clinical Pharmacology And Therapeutics | 2020-04-11 |
| Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing. | Christian Lieven, Moritz E Beber, Brett G Olivier, Frank T Bergmann, Meric Ataman, Parizad Babaei, Jennifer A Bartell, Lars M Blank, Siddharth Chauhan, Kevin Correia, Christian Diener, Andreas Dräger, Birgitta E Ebert, Janaka N Edirisinghe, José P Faria, Adam M Feist, Georgios Fengos, Ronan M T Fleming, Beatriz García-Jiménez, Vassily Hatzimanikatis, Wout van Helvoirt, Christopher S Henry, Henning Hermjakob, Markus J Herrgård, Ali Kaafarani, Hyun Uk Kim, Zachary King, Steffen Klamt, Edda Klipp, Jasper J Koehorst, Matthias König, Meiyappan Lakshmanan, Dong-Yup Lee, Sang Yup Lee, Sunjae Lee, Nathan E Lewis, Filipe Liu, Hongwu Ma, Daniel Machado, Radhakrishnan Mahadevan, Paulo Maia, Adil Mardinoglu, Gregory L Medlock, Jonathan M Monk, Jens Nielsen, Lars Keld Nielsen, Juan Nogales, Intawat Nookaew, Bernhard O Palsson, Jason A Papin, Kiran R Patil, Mark Poolman, Nathan D Price, Osbaldo Resendis-Antonio, Anne Richelle, Isabel Rocha, Benjamín J Sánchez, Peter J Schaap, Rahuman S Malik Sheriff, Saeed Shoaie, Nikolaus Sonnenschein, Bas Teusink, Paulo Vilaça, Jon Olav Vik, Judith A H Wodke, Joana C Xavier, Qianqian Yuan, Maksim Zakhartsev, Cheng Zhang | Nature Biotechnology | 2020-04-09 |
| Gut-derived uremic toxin handling in vivo requires OAT-mediated tubular secretion in chronic kidney disease. | Kevin T Bush, Prabhleen Singh, Sanjay K Nigam | JCI Insight | 2020-04-09 |
| USPSTF 2020 Recommendations on Screening for Asymptomatic Bacterial Vaginosis in Pregnancy. | Amanda L Lewis, Louise C Laurent | JAMA | 2020-04-08 |
| Computational Approach to Identifying Universal Macrophage Biomarkers. | Dharanidhar Dang, Sahar Taheri, Soumita Das, Pradipta Ghosh, Lawrence S Prince, Debashis Sahoo | Frontiers In Physiology | 2020-04-08 |
| Nonlinear Biosynthetic Assembly of Alpiniamide by a Hybrid /-AT PKS-NRPS. | Renata Sigrist, Hanna Luhavaya, Shaun M K McKinnie, Amanda Ferreira da Silva, Igor D Jurberg, Bradley S Moore, Luciana Gonzaga de Oliveira | ACS Chemical Biology | 2020-04-06 |
| The circadian clock and darkness control natural competence in cyanobacteria. | Arnaud Taton, Christian Erikson, Yiling Yang, Benjamin E Rubin, Scott A Rifkin, James W Golden, Susan S Golden | Nature Communications | 2020-04-03 |
| High-Throughput Screening of Kawasaki Disease Sera for Antiviral Antibodies. | Daniel Quiat, Tomasz Kula, Chisato Shimizu, John T Kanegaye, Adriana H Tremoulet, Zachary Pitkowsky, MaryBeth Son, Jane W Newburger, Stephen J Elledge, Jane C Burns | The Journal Of Infectious Diseases | 2020-04-02 |
| Gut Microbiota-Derived Propionate Regulates the Expression of Reg3 Mucosal Lectins and Ameliorates Experimental Colitis in Mice. | Danica Bajic, Adrian Niemann, Anna-Katharina Hillmer, Raquel Mejias-Luque, Sena Bluemel, Melissa Docampo, Maja C Funk, Elena Tonin, Michael Boutros, Bernd Schnabl, Dirk H Busch, Tsuyoshi Miki, Roland M Schmid, Marcel R M van den Brink, Markus Gerhard, Christoph K Stein-Thoeringer | Journal Of Crohn's & Colitis | 2020-04-01 |
| Palstimolide A: A Complex Polyhydroxy Macrolide with Antiparasitic Activity. | Lena Keller, Jair L Siqueira-Neto, Julia M Souza, Korina Eribez, Gregory M LaMonte, Jennifer E Smith, William H Gerwick | Molecules (Basel, Switzerland) | 2020-03-31 |
| Genetic Determinants Enabling Medium-Dependent Adaptation to Nafcillin in Methicillin-Resistant Staphylococcus aureus. | Michael J Salazar, Henrique Machado, Nicholas A Dillon, Hannah Tsunemoto, Richard Szubin, Samira Dahesh, Joseph Pogliano, George Sakoulas, Bernhard O Palsson, Victor Nizet, Adam M Feist | MSystems | 2020-03-31 |
| Executive Summary: Therapeutic Monitoring of Vancomycin for Serious Methicillin-Resistant Staphylococcus aureus Infections: A Revised Consensus Guideline and Review of the American Society of Health-System Pharmacists, the Infectious Diseases Society of America, the Pediatric Infectious Diseases Society, and the Society of Infectious Diseases Pharmacists. | Michael J Rybak, Jennifer Le, Thomas P Lodise, Donald P Levine, John S Bradley, Catherine Liu, Bruce A Mueller, Manjunath P Pai, Annie Wong-Beringer, John C Rotschafer, Keith A Rodvold, Holly D Maples, Benjamin M Lomaestro | Pharmacotherapy | 2020-03-29 |
| Two cases of type-a meningitis within the same week in the same hospital are phylogenetically unrelated but recently exchanged capsule genes. | Yves Terrat, Lauge Farnaes, John Bradley, Nicolas Tromas, B Jesse Shapiro | Microbial Genomics | 2020-03-26 |
| High Protein Intake Is Associated With Histological Disease Activity in Patients With NAFLD. | Sonja Lang, Anna Martin, Fedja Farowski, Hilmar Wisplinghoff, Maria J G T Vehreschild, Jinyuan Liu, Marcin Krawczyk, Angela Nowag, Anne Kretzschmar, Jens Herweg, Bernd Schnabl, Xin M Tu, Frank Lammert, Tobias Goeser, Frank Tacke, Kathrin Heinzer, Philipp Kasper, Hans-Michael Steffen, Münevver Demir | Hepatology Communications | 2020-03-26 |
| COVID-19, Mental Health and Aging: A Need for New Knowledge to Bridge Science and Service. | Ipsit V Vahia, Dan G Blazer, Gwenn S Smith, Jordan F Karp, David C Steffens, Brent P Forester, Rajesh Tampi, Marc Agronin, Dilip V Jeste, Charles F Reynolds | The American Journal Of Geriatric Psychiatry : Official Journal Of The American Association For Geriatric Psychiatry | 2020-03-25 |
| An atlas of human metabolism. | Jonathan L Robinson, Pınar Kocabaş, Hao Wang, Pierre-Etienne Cholley, Daniel Cook, Avlant Nilsson, Mihail Anton, Raphael Ferreira, Iván Domenzain, Virinchi Billa, Angelo Limeta, Alex Hedin, Johan Gustafsson, Eduard J Kerkhoven, L Thomas Svensson, Bernhard O Palsson, Adil Mardinoglu, Lena Hansson, Mathias Uhlén, Jens Nielsen | Science Signaling | 2020-03-24 |
| Fermentable fibers induce rapid macro- and micronutrient depletion in Toll-like receptor 5-deficient mice. | Rachel M Golonka, Beng San Yeoh, Yaqi Li, Piu Saha, Ahmed A Abokor, Xi Cheng, Xia Xiao, Darshan Shimoga Chandrashekar, Sooryanarayana Varambally, David J Gonzalez, A Catharine Ross, Matam Vijay-Kumar | American Journal Of Physiology. Gastrointestinal And Liver Physiology | 2020-03-23 |
| A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing. | David E Gordon, Gwendolyn M Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Matthew J O'Meara, Jeffrey Z Guo, Danielle L Swaney, Tia A Tummino, Ruth Hüttenhain, Robyn M Kaake, Alicia L Richards, Beril Tutuncuoglu, Helene Foussard, Jyoti Batra, Kelsey Haas, Maya Modak, Minkyu Kim, Paige Haas, Benjamin J Polacco, Hannes Braberg, Jacqueline M Fabius, Manon Eckhardt, Margaret Soucheray, Melanie J Bennett, Merve Cakir, Michael J McGregor, Qiongyu Li, Zun Zar Chi Naing, Yuan Zhou, Shiming Peng, Ilsa T Kirby, James E Melnyk, John S Chorba, Kevin Lou, Shizhong A Dai, Wenqi Shen, Ying Shi, Ziyang Zhang, Inigo Barrio-Hernandez, Danish Memon, Claudia Hernandez-Armenta, Christopher J P Mathy, Tina Perica, Kala B Pilla, Sai J Ganesan, Daniel J Saltzberg, Rakesh Ramachandran, Xi Liu, Sara B Rosenthal, Lorenzo Calviello, Srivats Venkataramanan, Yizhu Lin, Stephanie A Wankowicz, Markus Bohn, Raphael Trenker, Janet M Young, Devin Cavero, Joe Hiatt, Theo Roth, Ujjwal Rathore, Advait Subramanian, Julia Noack, Mathieu Hubert, Ferdinand Roesch, Thomas Vallet, Björn Meyer, Kris M White, Lisa Miorin, David Agard, Michael Emerman, Davide Ruggero, Adolfo García-Sastre, Natalia Jura, Mark von Zastrow, Jack Taunton, Olivier Schwartz, Marco Vignuzzi, Christophe d'Enfert, Shaeri Mukherjee, Matt Jacobson, Harmit S Malik, Danica G Fujimori, Trey Ideker, Charles S Craik, Stephen Floor, James S Fraser, John Gross, Andrej Sali, Tanja Kortemme, Pedro Beltrao, Kevan Shokat, Brian K Shoichet, Nevan J Krogan | BioRxiv : The Preprint Server For Biology | 2020-03-22 |
| Tracing the transmission dynamics of HIV-1 CRF55_01B. | Junjie Zai, Haizhou Liu, Zhenzhen Lu, Antoine Chaillon, Davey Smith, Yi Li, Xingguang Li | Scientific Reports | 2020-03-20 |
| A cullin-RING ubiquitin ligase promotes thermotolerance as part of the intracellular pathogen response in . | Johan Panek, Spencer S Gang, Kirthi C Reddy, Robert J Luallen, Amitkumar Fulzele, Eric J Bennett, Emily R Troemel | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-03-19 |
| Alcoholic-Hepatitis, Links to Brain and Microbiome: Mechanisms, Clinical and Experimental Research. | Manuela G Neuman, Helmut Karl Seitz, Samuel W French, Stephen Malnick, Heidekazu Tsukamoto, Lawrence B Cohen, Paula Hoffman, Boris Tabakoff, Michael Fasullo, Laura E Nagy, Pamela L Tuma, Bernd Schnabl, Sebastian Mueller, Jennifer L Groebner, French A Barbara, Jia Yue, Afifiyan Nikko, Mendoza Alejandro, Tillman Brittany, Vitocruz Edward, Kylie Harrall, Laura Saba, Opris Mihai | Biomedicines | 2020-03-18 |
| Multiple-Disease Detection and Classification across Cohorts via Microbiome Search. | Xiaoquan Su, Gongchao Jing, Zheng Sun, Lu Liu, Zhenjiang Xu, Daniel McDonald, Zengbin Wang, Honglei Wang, Antonio Gonzalez, Yufeng Zhang, Shi Huang, Gavin Huttley, Rob Knight, Jian Xu | MSystems | 2020-03-17 |
| Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome. | Bryn C Taylor, Franck Lejzerowicz, Marion Poirel, Justin P Shaffer, Lingjing Jiang, Alexander Aksenov, Nicole Litwin, Gregory Humphrey, Cameron Martino, Sandrine Miller-Montgomery, Pieter C Dorrestein, Patrick Veiga, Se Jin Song, Daniel McDonald, Muriel Derrien, Rob Knight | MSystems | 2020-03-17 |
| Persistent chikungunya arthritis in Roraima, Brazil. | Ramão Luciano Nogueira Hayd, Maony Rodrigues Moreno, Felipe Naveca, Richard Amdur, Karol Suchowiecki, Hugh Watson, Gary S Firestein, Gary Simon, Aileen Y Chang | Clinical Rheumatology | 2020-03-13 |
| Old In Vitro Antimicrobial Breakpoints Are Misleading Stewardship Efforts, Delaying Adoption of Innovative Therapies, and Harming Patients. | Paul G Ambrose, Sujata M Bhavnani, David R Andes, John S Bradley, Robert K Flamm, Jason M Pogue, Ronald N Jones | Open Forum Infectious Diseases | 2020-03-13 |
| Therapeutic Monitoring of Vancomycin for Serious Methicillin-resistant Staphylococcus aureus Infections: A Revised Consensus Guideline and Review by the American Society of Health-system Pharmacists, the Infectious Diseases Society of America, the Pediatric Infectious Diseases Society, and the Society of Infectious Diseases Pharmacists. | Michael J Rybak, Jennifer Le, Thomas P Lodise, Donald P Levine, John S Bradley, Catherine Liu, Bruce A Mueller, Manjunath P Pai, Annie Wong-Beringer, John C Rotschafer, Keith A Rodvold, Holly D Maples, Benjamin Lomaestro | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2020-03-12 |
| Mortality Risk Profiling of Staphylococcus aureus Bacteremia by Multi-omic Serum Analysis Reveals Early Predictive and Pathogenic Signatures. | Jacob M Wozniak, Robert H Mills, Joshua Olson, J R Caldera, Gregory D Sepich-Poore, Marvic Carrillo-Terrazas, Chih-Ming Tsai, Fernando Vargas, Rob Knight, Pieter C Dorrestein, George Y Liu, Victor Nizet, George Sakoulas, Warren Rose, David J Gonzalez | Cell | 2020-03-12 |
| Interleukin-17 Inhibition in Spondyloarthritis Is Associated With Subclinical Gut Microbiome Perturbations and a Distinctive Interleukin-25-Driven Intestinal Inflammation. | Julia Manasson, David S Wallach, Giuliana Guggino, Matthew Stapylton, Michelle H Badri, Gary Solomon, Soumya M Reddy, Roxana Coras, Alexander A Aksenov, Drew R Jones, Parvathy V Girija, Andrea L Neimann, Adriana Heguy, Leopoldo N Segal, Pieter C Dorrestein, Richard Bonneau, Monica Guma, Francesco Ciccia, Carles Ubeda, Jose C Clemente, Jose U Scher | Arthritis & Rheumatology (Hoboken, N.J.) | 2020-03-12 |
| Microbiome analyses of blood and tissues suggest cancer diagnostic approach. | Gregory D Poore, Evguenia Kopylova, Qiyun Zhu, Carolina Carpenter, Serena Fraraccio, Stephen Wandro, Tomasz Kosciolek, Stefan Janssen, Jessica Metcalf, Se Jin Song, Jad Kanbar, Sandrine Miller-Montgomery, Robert Heaton, Rana Mckay, Sandip Pravin Patel, Austin D Swafford, Rob Knight | Nature | 2020-03-11 |
| Siglecs at the Host-Pathogen Interface. | Yung-Chi Chang, Victor Nizet | Advances In Experimental Medicine And Biology | 2020-03-11 |
| Extending the Salinilactone Family. | Christian Schlawis, Tim Harig, Stephanie Ehlers, Dulce G Guillen-Matus, Kaitlin E Creamer, Paul R Jensen, Stefan Schulz | Chembiochem : A European Journal Of Chemical Biology | 2020-03-10 |
| Metabolome-Informed Microbiome Analysis Refines Metadata Classifications and Reveals Unexpected Medication Transfer in Captive Cheetahs. | Julia M Gauglitz, James T Morton, Anupriya Tripathi, Shalisa Hansen, Michele Gaffney, Carolina Carpenter, Kelly C Weldon, Riya Shah, Amy Parampil, Andrea L Fidgett, Austin D Swafford, Rob Knight, Pieter C Dorrestein | MSystems | 2020-03-10 |
| Directed Metabolic Pathway Evolution Enables Functional Pterin-Dependent Aromatic-Amino-Acid Hydroxylation in . | Hao Luo, Lei Yang, Se Hyeuk Kim, Tune Wulff, Adam M Feist, Markus Herrgard, Bernhard Ø Palsson | ACS Synthetic Biology | 2020-03-09 |
| Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice. | Gregory P Donaldson, Wen-Chi Chou, Abigail L Manson, Peter Rogov, Thomas Abeel, James Bochicchio, Dawn Ciulla, Alexandre Melnikov, Peter B Ernst, Hiutung Chu, Georgia Giannoukos, Ashlee M Earl, Sarkis K Mazmanian | Nature Microbiology | 2020-03-09 |
| Chance and necessity in the pleiotropic consequences of adaptation for budding yeast. | Elizabeth R Jerison, Alex N Nguyen Ba, Michael M Desai, Sergey Kryazhimskiy | Nature Ecology & Evolution | 2020-03-09 |
| Understanding the mother-breastmilk-infant "triad". | Lars Bode, Arjun S Raman, Simon H Murch, Nigel C Rollins, Jeffrey I Gordon | Science (New York, N.Y.) | 2020-03-07 |
| Systems Biology Analysis Reveals Eight SLC22 Transporter Subgroups, Including OATs, OCTs, and OCTNs. | Darcy C Engelhart, Jeffry C Granados, Da Shi, Milton H Saier Jr, Michael E Baker, Ruben Abagyan, Sanjay K Nigam | International Journal Of Molecular Sciences | 2020-03-05 |
| Metabolic and genetic basis for auxotrophies in Gram-negative species. | Yara Seif, Kumari Sonal Choudhary, Ying Hefner, Amitesh Anand, Laurence Yang, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-03-04 |
| MEMOTE for standardized genome-scale metabolic model testing. | Christian Lieven, Moritz E Beber, Brett G Olivier, Frank T Bergmann, Meric Ataman, Parizad Babaei, Jennifer A Bartell, Lars M Blank, Siddharth Chauhan, Kevin Correia, Christian Diener, Andreas Dräger, Birgitta E Ebert, Janaka N Edirisinghe, José P Faria, Adam M Feist, Georgios Fengos, Ronan M T Fleming, Beatriz García-Jiménez, Vassily Hatzimanikatis, Wout van Helvoirt, Christopher S Henry, Henning Hermjakob, Markus J Herrgård, Ali Kaafarani, Hyun Uk Kim, Zachary King, Steffen Klamt, Edda Klipp, Jasper J Koehorst, Matthias König, Meiyappan Lakshmanan, Dong-Yup Lee, Sang Yup Lee, Sunjae Lee, Nathan E Lewis, Filipe Liu, Hongwu Ma, Daniel Machado, Radhakrishnan Mahadevan, Paulo Maia, Adil Mardinoglu, Gregory L Medlock, Jonathan M Monk, Jens Nielsen, Lars Keld Nielsen, Juan Nogales, Intawat Nookaew, Bernhard O Palsson, Jason A Papin, Kiran R Patil, Mark Poolman, Nathan D Price, Osbaldo Resendis-Antonio, Anne Richelle, Isabel Rocha, Benjamín J Sánchez, Peter J Schaap, Rahuman S Malik Sheriff, Saeed Shoaie, Nikolaus Sonnenschein, Bas Teusink, Paulo Vilaça, Jon Olav Vik, Judith A H Wodke, Joana C Xavier, Qianqian Yuan, Maksim Zakhartsev, Cheng Zhang | Nature Biotechnology | 2020-03-04 |
| Inducible cell-to-cell signaling for tunable dynamics in microbial communities. | Arianna Miano, Michael J Liao, Jeff Hasty | Nature Communications | 2020-03-04 |
| Reconstruction and Validation of a Genome-Scale Metabolic Model of (iCJ415), a Human Commensal and Opportunistic Pathogen. | Christian S Jensen, Charles J Norsigian, Xin Fang, Xiaohui C Nielsen, Jens Jørgen Christensen, Bernhard O Palsson, Jonathan M Monk | Frontiers In Genetics | 2020-03-03 |
| Expression of Heterologous Gene Improves Glutathione (GSH)-Dependent Antioxidant System and Maintenance of Cellular Redox Status in PCC 7942. | Young-Saeng Kim, Seong-Im Park, Jin-Ju Kim, Joseph S Boyd, Joris Beld, Arnaud Taton, Kyoung-In Lee, Il-Sup Kim, James W Golden, Ho-Sung Yoon | Frontiers In Plant Science | 2020-03-03 |
| Longitudinal survey of microbiome associated with particulate matter in a megacity. | Nan Qin, Peng Liang, Chunyan Wu, Guanqun Wang, Qian Xu, Xiao Xiong, Tingting Wang, Moreno Zolfo, Nicola Segata, Huanlong Qin, Rob Knight, Jack A Gilbert, Ting F Zhu | Genome Biology | 2020-03-03 |
| Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing. | Farnaz Fouladi, Maximilian J Bailey, William B Patterson, Michael Sioda, Ivory C Blakley, Anthony A Fodor, Roshonda B Jones, Zhanghua Chen, Jeniffer S Kim, Frederick Lurmann, Cameron Martino, Rob Knight, Frank D Gilliland, Tanya L Alderete | Environment International | 2020-03-02 |
| Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens. | Jason C Hyun, Erol S Kavvas, Jonathan M Monk, Bernhard O Palsson | PLoS Computational Biology | 2020-03-02 |
| Diet-induced obesity promotes infection by impairment of the innate antimicrobial defense function of dermal adipocyte progenitors. | Ling-Juan Zhang, Christian F Guerrero-Juarez, Stella X Chen, Xiaowei Zhang, Meimei Yin, Fengwu Li, Shuai Wu, Joyce Chen, Min Li, Yingzi Liu, Shang I B Jiang, Tissa Hata, Maksim V Plikus, Richard L Gallo | Science Translational Medicine | 2020-03-02 |
| Role of peribrachial fat as a key determinant of brachial artery dilatation for successful arteriovenous fistula maturation in hemodialysis patients. | Hyung Seok Lee, Mi Jin Park, Sam Youl Yoon, Narae Joo, Young Rim Song, Hyung Jik Kim, Sung Gyun Kim, Victor Nizet, Jwa-Kyung Kim | Scientific Reports | 2020-03-02 |
| Dietary prebiotics alter novel microbial dependent fecal metabolites that improve sleep. | Robert S Thompson, Fernando Vargas, Pieter C Dorrestein, Maciej Chichlowski, Brian M Berg, Monika Fleshner | Scientific Reports | 2020-03-02 |
| SHOGUN: a modular, accurate and scalable framework for microbiome quantification. | Benjamin Hillmann, Gabriel A Al-Ghalith, Robin R Shields-Cutler, Qiyun Zhu, Rob Knight, Dan Knights | Bioinformatics (Oxford, England) | 2020-02-27 |
| Global chemical effects of the microbiome include new bile-acid conjugations. | Robert A Quinn, Alexey V Melnik, Alison Vrbanac, Ting Fu, Kathryn A Patras, Mitchell P Christy, Zsolt Bodai, Pedro Belda-Ferre, Anupriya Tripathi, Lawton K Chung, Michael Downes, Ryan D Welch, Melissa Quinn, Greg Humphrey, Morgan Panitchpakdi, Kelly C Weldon, Alexander Aksenov, Ricardo da Silva, Julian Avila-Pacheco, Clary Clish, Sena Bae, Himel Mallick, Eric A Franzosa, Jason Lloyd-Price, Robert Bussell, Taren Thron, Andrew T Nelson, Mingxun Wang, Eric Leszczynski, Fernando Vargas, Julia M Gauglitz, Michael J Meehan, Emily Gentry, Timothy D Arthur, Alexis C Komor, Orit Poulsen, Brigid S Boland, John T Chang, William J Sandborn, Meerana Lim, Neha Garg, Julie C Lumeng, Ramnik J Xavier, Barbara I Kazmierczak, Ruchi Jain, Marie Egan, Kyung E Rhee, David Ferguson, Manuela Raffatellu, Hera Vlamakis, Gabriel G Haddad, Dionicio Siegel, Curtis Huttenhower, Sarkis K Mazmanian, Ronald M Evans, Victor Nizet, Rob Knight, Pieter C Dorrestein | Nature | 2020-02-26 |
| Fecal Viral Community Responses to High-Fat Diet in Mice. | Anjelique Schulfer, Tasha M Santiago-Rodriguez, Melissa Ly, Joshua M Borin, Jessica Chopyk, Martin J Blaser, David T Pride | MSphere | 2020-02-26 |
| Author Correction: Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity. | Robert C Kaplan, Zheng Wang, Mykhaylo Usyk, Daniela Sotres-Alvarez, Martha L Daviglus, Neil Schneiderman, Gregory A Talavera, Marc D Gellman, Bharat Thyagarajan, Jee-Young Moon, Yoshiki Vázquez-Baeza, Daniel McDonald, Jessica S Williams-Nguyen, Michael C Wu, Kari E North, Justin Shaffer, Christopher C Sollecito, Qibin Qi, Carmen R Isasi, Tao Wang, Rob Knight, Robert D Burk | Genome Biology | 2020-02-25 |
| Heterogeneity and clonal relationships of adaptive immune cells in ulcerative colitis revealed by single-cell analyses. | Brigid S Boland, Zhaoren He, Matthew S Tsai, Jocelyn G Olvera, Kyla D Omilusik, Han G Duong, Eleanor S Kim, Abigail E Limary, Wenhao Jin, J Justin Milner, Bingfei Yu, Shefali A Patel, Tiani L Louis, Tiffani Tysl, Nadia S Kurd, Alexandra Bortnick, Lauren K Quezada, Jad N Kanbar, Ara Miralles, Danny Huylebroeck, Mark A Valasek, Parambir S Dulai, Siddharth Singh, Li-Fan Lu, Jack D Bui, Cornelis Murre, William J Sandborn, Ananda W Goldrath, Gene W Yeo, John T Chang | Science Immunology | 2020-02-25 |
| Phase 2 Study of the Safety, Pharmacokinetics and Efficacy of Ceftaroline Fosamil in Neonates and Very Young Infants With Late-onset Sepsis. | John S Bradley, Gregory G Stone, Phylinda L S Chan, Susan R Raber, Todd Riccobene, Veronica Mas Casullo, Jean Li Yan, Victoria M Hendrick, Jennifer Hammond, Heidi K Leister-Tebbe | The Pediatric Infectious Disease Journal | 2020-02-25 |
| Microbial Colonization of Germ-Free Mice Restores Neointimal Hyperplasia Development After Arterial Injury. | Edmund B Chen, Katherine E Shapiro, Kelly Wun, Thomas Kuntz, Betty R Theriault, Michael J Nooromid, Vanessa A Leone, Katharine G Harris, Qun Jiang, Melanie Spedale, Liqun Xiong, Jack A Gilbert, Eugene B Chang, Karen J Ho | Journal Of The American Heart Association | 2020-02-24 |
| A Convolutional Neural Network-Based Approach for the Rapid Annotation of Molecularly Diverse Natural Products. | Raphael Reher, Hyun Woo Kim, Chen Zhang, Huanru Henry Mao, Mingxun Wang, Louis-Félix Nothias, Andres Mauricio Caraballo-Rodriguez, Evgenia Glukhov, Bahar Teke, Tiago Leao, Kelsey L Alexander, Brendan M Duggan, Ezra L Van Everbroeck, Pieter C Dorrestein, Garrison W Cottrell, William H Gerwick | Journal Of The American Chemical Society | 2020-02-21 |
| Host engulfment pathway controls inflammation in inflammatory bowel disease. | Ibrahim M Sayed, Katherine Suarez, Eileen Lim, Sujay Singh, Matheus Pereira, Stella-Rita Ibeawuchi, Gajanan Katkar, Ying Dunkel, Yash Mittal, Ranajoy Chattopadhyay, Monica Guma, Brigid S Boland, Parambir S Dulai, William J Sandborn, Pradipta Ghosh, Soumita Das | The FEBS Journal | 2020-02-20 |
| Repeated sleep disruption in mice leads to persistent shifts in the fecal microbiome and metabolome. | Samuel J Bowers, Fernando Vargas, Antonio González, Shannon He, Peng Jiang, Pieter C Dorrestein, Rob Knight, Kenneth P Wright, Christopher A Lowry, Monika Fleshner, Martha H Vitaterna, Fred W Turek | PloS One | 2020-02-20 |
| Multi-Omic Profiling of Sponges Reveals Diverse Metabolomic and Microbiome Architectures that Are Non-overlapping with Ecological Neighbors. | Ipsita Mohanty, Sheila Podell, Jason S Biggs, Neha Garg, Eric E Allen, Vinayak Agarwal | Marine Drugs | 2020-02-19 |
| Corrigendum: What's Normal? Microbiomes in Human Milk and Infant Feces Are Related to Each Other but Vary Geographically: The INSPIRE Study. | Kimberly A Lackey, Janet E Williams, Courtney L Meehan, Jessica A Zachek, Elizabeth D Benda, William J Price, James A Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, Debela Gindola K, Linda J Kvist, Gloria E Otoo, Cristina García-Carral, Esther Jiménez, Lorena Ruiz, Juan M Rodríguez, Rossina G Pareja, Lars Bode, Mark A McGuire, Michelle K McGuire | Frontiers In Nutrition | 2020-02-19 |
| Mesoscale All-Atom Influenza Virus Simulations Suggest New Substrate Binding Mechanism. | Jacob D Durrant, Sarah E Kochanek, Lorenzo Casalino, Pek U Ieong, Abigail C Dommer, Rommie E Amaro | ACS Central Science | 2020-02-19 |
| Emerging Priorities for Microbiome Research. | Chad M Cullen, Kawalpreet K Aneja, Sinem Beyhan, Clara E Cho, Stephen Woloszynek, Matteo Convertino, Sophie J McCoy, Yanyan Zhang, Matthew Z Anderson, David Alvarez-Ponce, Ekaterina Smirnova, Lisa Karstens, Pieter C Dorrestein, Hongzhe Li, Ananya Sen Gupta, Kevin Cheung, Jennifer Gloeckner Powers, Zhengqiao Zhao, Gail L Rosen | Frontiers In Microbiology | 2020-02-19 |
| Gut microbiome heritability is nearly universal but environmentally contingent. | Laura Grieneisen, Mauna Dasari, Trevor J Gould, Johannes R Björk, Jean-Christophe Grenier, Vania Yotova, David Jansen, Neil Gottel, Jacob B Gordon, Niki H Learn, Laurence R Gesquiere, Tim L Wango, Raphael S Mututua, J Kinyua Warutere, Long'ida Siodi, Jack A Gilbert, Luis B Barreiro, Susan C Alberts, Jenny Tung, Elizabeth A Archie, Ran Blekhman | Science (New York, N.Y.) | 2020-02-18 |
| Attention/Working Memory, Learning and Memory in Adult Cameroonians: Normative Data, Effects of HIV Infection and Viral Genotype. | Georgette D Kanmogne, Julius Y Fonsah, Anya Umlauf, Jacob Moul, Roland F Doh, Anne M Kengne, Bin Tang, Claude T Tagny, Emilienne Nchindap, Léopoldine Kenmogne, Donald Franklin, Dora M Njamnshi, Dora Mbanya, Alfred K Njamnshi, Robert K Heaton | Journal Of The International Neuropsychological Society : JINS | 2020-02-18 |
| Ecosystem effects of the world's largest invasive animal. | Jonathan B Shurin, Nelson Aranguren-Riaño, Daniel Duque Negro, David Echeverri Lopez, Natalie T Jones, Oscar Laverde-R, Alexander Neu, Adriana Pedroza Ramos | Ecology | 2020-02-18 |
| Engineered immunogen binding to alum adjuvant enhances humoral immunity. | Tyson J Moyer, Yu Kato, Wuhbet Abraham, Jason Y H Chang, Daniel W Kulp, Nicki Watson, Hannah L Turner, Sergey Menis, Robert K Abbott, Jinal N Bhiman, Mariane B Melo, Hayley A Simon, Sara Herrera-De la Mata, Shu Liang, Gregory Seumois, Yash Agarwal, Na Li, Dennis R Burton, Andrew B Ward, William R Schief, Shane Crotty, Darrell J Irvine | Nature Medicine | 2020-02-17 |
| Advances in non-invasive assessment of hepatic fibrosis. | Rohit Loomba, Leon A Adams | Gut | 2020-02-17 |
| Precision medicine in perinatal depression in light of the human microbiome. | Beatriz Peñalver Bernabé, Pauline M Maki, Shannon M Dowty, Mariana Salas, Lauren Cralle, Zainab Shah, Jack A Gilbert | Psychopharmacology | 2020-02-17 |
| Shared genetic risk between eating disorder- and substance-use-related phenotypes: Evidence from genome-wide association studies. | Melissa A Munn-Chernoff, Emma C Johnson, Yi-Ling Chou, Jonathan R I Coleman, Laura M Thornton, Raymond K Walters, Zeynep Yilmaz, Jessica H Baker, Christopher Hübel, Scott Gordon, Sarah E Medland, Hunna J Watson, Héléna A Gaspar, Julien Bryois, Anke Hinney, Virpi M Leppä, Manuel Mattheisen, Stephan Ripke, Shuyang Yao, Paola Giusti-Rodríguez, Ken B Hanscombe, Roger A H Adan, Lars Alfredsson, Tetsuya Ando, Ole A Andreassen, Wade H Berrettini, Ilka Boehm, Claudette Boni, Vesna Boraska Perica, Katharina Buehren, Roland Burghardt, Matteo Cassina, Sven Cichon, Maurizio Clementi, Roger D Cone, Philippe Courtet, Scott Crow, James J Crowley, Unna N Danner, Oliver S P Davis, Martina de Zwaan, George Dedoussis, Daniela Degortes, Janiece E DeSocio, Danielle M Dick, Dimitris Dikeos, Christian Dina, Monika Dmitrzak-Weglarz, Elisa Docampo, Laramie E Duncan, Karin 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Pierre J Magistretti, Mario Maj, Katrin Mannik, Sara Marsal, Christian R Marshall, Morten Mattingsdal, Sara McDevitt, Peter McGuffin, Andres Metspalu, Ingrid Meulenbelt, Nadia Micali, Karen Mitchell, Alessio Maria Monteleone, Palmiero Monteleone, Benedetta Nacmias, Marie Navratilova, Ioanna Ntalla, Julie K O'Toole, Roel A Ophoff, Leonid Padyukov, Aarno Palotie, Jacques Pantel, Hana Papezova, Dalila Pinto, Raquel Rabionet, Anu Raevuori, Nicolas Ramoz, Ted Reichborn-Kjennerud, Valdo Ricca, Samuli Ripatti, Franziska Ritschel, Marion Roberts, Alessandro Rotondo, Dan Rujescu, Filip Rybakowski, Paolo Santonastaso, André Scherag, Stephen W Scherer, Ulrike Schmidt, Nicholas J Schork, Alexandra Schosser, Jochen Seitz, Lenka Slachtova, P Eline Slagboom, Margarita C T Slof-Op't Landt, Agnieszka Slopien, Sandro Sorbi, Beata Świątkowska, Jin P Szatkiewicz, Ioanna Tachmazidou, Elena Tenconi, Alfonso Tortorella, Federica Tozzi, Janet Treasure, Artemis Tsitsika, Marta Tyszkiewicz-Nwafor, Konstantinos Tziouvas, Annemarie A van Elburg, Eric F van Furth, Gudrun Wagner, Esther Walton, Elisabeth Widen, Eleftheria Zeggini, Stephanie Zerwas, Stephan Zipfel, Andrew W Bergen, Joseph M Boden, Harry Brandt, Steven Crawford, Katherine A Halmi, L John Horwood, Craig Johnson, Allan S Kaplan, Walter H Kaye, James Mitchell, Catherine M Olsen, John F Pearson, Nancy L Pedersen, Michael Strober, Thomas Werge, David C Whiteman, D Blake Woodside, Jakob Grove, Anjali K Henders, Janne T Larsen, Richard Parker, Liselotte V Petersen, Jennifer Jordan, Martin A Kennedy, Andreas Birgegård, Paul Lichtenstein, Claes Norring, Mikael Landén, Preben Bo Mortensen, Renato Polimanti, Jeanette N McClintick, Amy E Adkins, Fazil Aliev, Silviu-Alin Bacanu, Anthony Batzler, Sarah Bertelsen, Joanna M Biernacka, Tim B Bigdeli, Li-Shiun Chen, Toni-Kim Clarke, Franziska Degenhardt, Anna R Docherty, Alexis C Edwards, Jerome C Foo, Louis Fox, Josef Frank, Laura M Hack, Annette M Hartmann, Sarah M Hartz, Stefanie Heilmann-Heimbach, Colin Hodgkinson, Per Hoffmann, Jouke-Jan Hottenga, Bettina Konte, Jari Lahti, Marius Lahti-Pulkkinen, Dongbing Lai, Lannie Ligthart, Anu Loukola, Brion S Maher, Hamdi Mbarek, Andrew M McIntosh, Matthew B McQueen, Jacquelyn L Meyers, Yuri Milaneschi, Teemu Palviainen, Roseann E Peterson, Euijung Ryu, Nancy L Saccone, Jessica E Salvatore, Sandra Sanchez-Roige, Melanie Schwandt, Richard Sherva, Fabian Streit, Jana Strohmaier, Nathaniel Thomas, Jen-Chyong Wang, Bradley T Webb, Robbee Wedow, Leah Wetherill, Amanda G Wills, Hang Zhou, Jason D Boardman, Danfeng Chen, Doo-Sup Choi, William E Copeland, Robert C Culverhouse, Norbert Dahmen, Louisa Degenhardt, Benjamin W Domingue, Mark A Frye, Wolfgang Gäebel, Caroline Hayward, Marcus Ising, Margaret Keyes, Falk Kiefer, Gabriele Koller, John Kramer, Samuel Kuperman, Susanne Lucae, Michael T Lynskey, Wolfgang Maier, Karl Mann, Satu Männistö, Bertram Müller-Myhsok, Alison D Murray, John I Nurnberger, Ulrich Preuss, Katri Räikkönen, Maureen D Reynolds, Monika Ridinger, Norbert Scherbaum, Marc A Schuckit, Michael Soyka, Jens Treutlein, Stephanie H Witt, Norbert Wodarz, Peter Zill, Daniel E Adkins, Dorret I Boomsma, Laura J Bierut, Sandra A Brown, Kathleen K Bucholz, E Jane Costello, Harriet de Wit, Nancy Diazgranados, Johan G Eriksson, Lindsay A Farrer, Tatiana M Foroud, Nathan A Gillespie, Alison M Goate, David Goldman, Richard A Grucza, Dana B Hancock, Kathleen Mullan Harris, Victor Hesselbrock, John K Hewitt, Christian J Hopfer, William G Iacono, Eric O Johnson, Victor M Karpyak, Kenneth S Kendler, Henry R Kranzler, Kenneth Krauter, Penelope A Lind, Matt McGue, James MacKillop, Pamela A F Madden, Hermine H Maes, Patrik K E Magnusson, Elliot C Nelson, Markus M Nöthen, Abraham A Palmer, Brenda W J H Penninx, Bernice Porjesz, John P Rice, Marcella Rietschel, Brien P Riley, Richard J Rose, Pei-Hong Shen, Judy Silberg, Michael C Stallings, Ralph E Tarter, Michael M Vanyukov, Scott Vrieze, Tamara L Wall, John B Whitfield, Hongyu Zhao, Benjamin M Neale, Tracey D Wade, Andrew C Heath, Grant W Montgomery, Nicholas G Martin, Patrick F Sullivan, Jaakko Kaprio, Gerome Breen, Joel Gelernter, Howard J Edenberg, Cynthia M Bulik, Arpana Agrawal | Addiction Biology | 2020-02-16 |
| Differing salivary microbiome diversity, community and diurnal rhythmicity in association with affective state and peripheral inflammation in adults. | Jordan N Kohn, Tomasz Kosciolek, Clarisse Marotz, Gajender Aleti, Robert N Guay-Ross, Seong-Hun Hong, Shalisa Hansen, Austin Swafford, Rob Knight, Suzi Hong | Brain, Behavior, And Immunity | 2020-02-14 |
| Thirty complete Streptomyces genome sequences for mining novel secondary metabolite biosynthetic gene clusters. | Namil Lee, Woori Kim, Soonkyu Hwang, Yongjae Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | Scientific Data | 2020-02-13 |
| Circadian Rhythms in the Pathogenesis and Treatment of Fatty Liver Disease. | Anand R Saran, Shravan Dave, Amir Zarrinpar | Gastroenterology | 2020-02-13 |
| Human Skin, Oral, and Gut Microbiomes Predict Chronological Age. | Shi Huang, Niina Haiminen, Anna-Paola Carrieri, Rebecca Hu, Lingjing Jiang, Laxmi Parida, Baylee Russell, Celeste Allaband, Amir Zarrinpar, Yoshiki Vázquez-Baeza, Pedro Belda-Ferre, Hongwei Zhou, Ho-Cheol Kim, Austin D Swafford, Rob Knight, Zhenjiang Zech Xu | MSystems | 2020-02-11 |
| A gut bacterial amyloid promotes α-synuclein aggregation and motor impairment in mice. | Timothy R Sampson, Collin Challis, Neha Jain, Anastasiya Moiseyenko, Mark S Ladinsky, Gauri G Shastri, Taren Thron, Brittany D Needham, Istvan Horvath, Justine W Debelius, Stefan Janssen, Rob Knight, Pernilla Wittung-Stafshede, Viviana Gradinaru, Matthew Chapman, Sarkis K Mazmanian | ELife | 2020-02-11 |
| Cathelicidin preserves intestinal barrier function in polymicrobial sepsis. | Jeffery Ho, Hung Chan, Yonghao Liang, Xiaodong Liu, Lin Zhang, Qing Li, Yuchen Zhang, Judeng Zeng, Felix N Ugwu, Idy H T Ho, Wei Hu, Johnny C W Yau, Sunny H Wong, Wai Tat Wong, Lowell Ling, Chi H Cho, Richard L Gallo, Tony Gin, Gary Tse, Jun Yu, Matthew T V Chan, Czarina C H Leung, William K K Wu | Critical Care (London, England) | 2020-02-10 |
| Cruel to Be Kind: Epithelial, Microbial, and Immune Cell Interactions in Gastrointestinal Cancers. | Shabnam Shalapour, Michael Karin | Annual Review Of Immunology | 2020-02-10 |
| De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences. | Nikolaos Vakirlis, Omer Acar, Brian Hsu, Nelson Castilho Coelho, S Branden Van Oss, Aaron Wacholder, Kate Medetgul-Ernar, Ray W Bowman, Cameron P Hines, John Iannotta, Saurin Bipin Parikh, Aoife McLysaght, Carlos J Camacho, Allyson F O'Donnell, Trey Ideker, Anne-Ruxandra Carvunis | Nature Communications | 2020-02-07 |
| Patterns of Oral Microbiota Diversity in Adults and Children: A Crowdsourced Population Study. | Zachary M Burcham, Nicole L Garneau, Sarah S Comstock, Robin M Tucker, Rob Knight, Jessica L Metcalf, | Scientific Reports | 2020-02-07 |
| 3M-052, a synthetic TLR-7/8 agonist, induces durable HIV-1 envelope-specific plasma cells and humoral immunity in nonhuman primates. | Sudhir Pai Kasturi, Mohammed Ata Ur Rasheed, Colin Havenar-Daughton, Mathew Pham, Traci Legere, Zarpheen Jinnah Sher, Yevgeny Kovalenkov, Sanjeev Gumber, Jessica Y Huang, Raphael Gottardo, William Fulp, Alicia Sato, Sheetal Sawant, Sherry Stanfield-Oakley, Nicole Yates, Celia LaBranche, S Munir Alam, Georgia Tomaras, Guido Ferrari, David Montefiori, Jens Wrammert, Francois Villinger, Mark Tomai, John Vasilakos, Christopher B Fox, Steven G Reed, Barton F Haynes, Shane Crotty, Rafi Ahmed, Bali Pulendran | Science Immunology | 2020-01-30 |
| HIV/HCV therapy with ledipasvir/sofosbuvir after randomized switch to emtricitabine-tenofovir alafenamide-based single-tablet regimens. | Gregory D Huhn, Moti Ramgopal, Mamta K Jain, Federico Hinestrosa, David M Asmuth, Jihad Slim, Deborah Goldstein, Shauna Applin, Julie H Ryu, Shuping Jiang, Stephanie Cox, Moupali Das, Thai Nguyen-Cleary, David Piontkowsky, Bill Guyer, Lorenzo Rossaro, Richard H Haubrich | PloS One | 2020-01-29 |
| Onion-like Multifunctional Microtrap Vehicles for Attraction-Trapping-Destruction of Biological Threats. | Fernando Soto, Daniel Kupor, Miguel Angel Lopez-Ramirez, Fanan Wei, Emil Karshalev, Songsong Tang, Farshad Tehrani, Joseph Wang | Angewandte Chemie (International Ed. In English) | 2020-01-29 |
| Tutuilamides A-C: Vinyl-Chloride-Containing Cyclodepsipeptides from Marine Cyanobacteria with Potent Elastase Inhibitory Properties. | Lena Keller, Kirley Marques Canuto, Chenxi Liu, Brian M Suzuki, Jehad Almaliti, Asfandyar Sikandar, C Benjamin Naman, Evgenia Glukhov, Danmeng Luo, Brendan M Duggan, Hendrik Luesch, Jesko Koehnke, Anthony J O'Donoghue, William H Gerwick | ACS Chemical Biology | 2020-01-28 |
| Organ-level protein networks as a reference for the host effects of the microbiome. | Robert H Mills, Jacob M Wozniak, Alison Vrbanac, Anaamika Campeau, Benoit Chassaing, Andrew Gewirtz, Rob Knight, David J Gonzalez | Genome Research | 2020-01-28 |
| Iron competition triggers antibiotic biosynthesis in Streptomyces coelicolor during coculture with Myxococcus xanthus. | Namil Lee, Woori Kim, Jinkyoo Chung, Yongjae Lee, Suhyung Cho, Kyoung-Soon Jang, Sun Chang Kim, Bernhard Palsson, Byung-Kwan Cho | The ISME Journal | 2020-01-28 |
| STATR: A simple analysis pipeline of Ribo-Seq in bacteria. | Donghui Choe, Bernhard Palsson, Byung-Kwan Cho | Journal Of Microbiology (Seoul, Korea) | 2020-01-28 |
| Experimental approaches to tracking mobile genetic elements in microbial communities. | Christina C Saak, Cong B Dinh, Rachel J Dutton | FEMS Microbiology Reviews | 2020-01-24 |
| Genome-scale transcriptional dynamics and environmental biosensing. | Garrett Graham, Nicholas Csicsery, Elizabeth Stasiowski, Gregoire Thouvenin, William H Mather, Michael Ferry, Scott Cookson, Jeff Hasty | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-01-23 |
| Cytolysin-positive Enterococcus faecalis is not increased in patients with non-alcoholic steatohepatitis. | Sonja Lang, Münevver Demir, Yi Duan, Anna Martin, Bernd Schnabl | Liver International : Official Journal Of The International Association For The Study Of The Liver | 2020-01-23 |
| Identification of a Human Skin Commensal Bacterium that Selectively Kills Cutibacterium acnes. | Alan M O'Neill, Teruaki Nakatsuji, Asumi Hayachi, Michael R Williams, Robert H Mills, David J Gonzalez, Richard L Gallo | The Journal Of Investigative Dermatology | 2020-01-23 |
| Comparative Analysis of Gut Microbiota Following Changes in Training Volume Among Swimmers. | Jarrad Timothy Hampton-Marcell, Tifani W Eshoo, Marc D Cook, Jack A Gilbert, Craig A Horswill, Rachel Poretsky | International Journal Of Sports Medicine | 2020-01-23 |
| Dynamic post-translational modification profiling of -infected primary macrophages. | Jonathan M Budzik, Danielle L Swaney, David Jimenez-Morales, Jeffrey R Johnson, Nicholas E Garelis, Teresa Repasy, Allison W Roberts, Lauren M Popov, Trevor J Parry, Dexter Pratt, Trey Ideker, Nevan J Krogan, Jeffery S Cox | ELife | 2020-01-17 |
| Reinvigorating NIH Grant Peer Review. | Shane Crotty, Catherine Blish, Ken Cadwell, Hongbo Chi, Ananda Goldrath, Douglas Green, Susan M Kaech, Matthew Krummel, Marion Pepper, Carla V Rothlin, E John Wherry, | Immunity | 2020-01-16 |
| A dual role for hepatocyte-intrinsic canonical NF-κB signaling in virus control. | Sukumar Namineni, Tracy O'Connor, Suzanne Faure-Dupuy, Pål Johansen, Tobias Riedl, Kaijing Liu, Haifeng Xu, Indrabahadur Singh, Prashant Shinde, Fanghui Li, Aleksandra Pandyra, Piyush Sharma, Marc Ringelhan, Andreas Muschaweckh, Katharina Borst, Patrick Blank, Sandra Lampl, Katharina Neuhaus, David Durantel, Rayan Farhat, Achim Weber, Daniela Lenggenhager, Thomas M Kündig, Peter Staeheli, Ulrike Protzer, Dirk Wohlleber, Bernhard Holzmann, Marco Binder, Kai Breuhahn, Lisa Mareike Assmus, Jacob Nattermann, Zeinab Abdullah, Maude Rolland, Emmanuel Dejardin, Philipp A Lang, Karl S Lang, Michael Karin, Julie Lucifora, Ulrich Kalinke, Percy A Knolle, Mathias Heikenwalder | Journal Of Hepatology | 2020-01-15 |
| Macrofilaricidal Benzimidazole-Benzoxaborole Hybrids as an Approach to the Treatment of River Blindness: Part 1. Amide Linked Analogs. | Tsutomu Akama, Yvonne R Freund, Pamela W Berry, David S Carter, Eric E Easom, Kurt Jarnagin, Christopher S Lunde, Jacob J Plattner, Fernando Rock, Rianna Stefanakis, Chelsea Fischer, Christina A Bulman, Kee Chong Lim, Brian M Suzuki, Nancy Tricoche, Abdelmoneim Mansour, Utami DiCosty, Scott McCall, Ben Carson, John W McCall, James McKerrow, Marc P Hübner, Sabine Specht, Achim Hoerauf, Sara Lustigman, Judy A Sakanari, Robert T Jacobs | ACS Infectious Diseases | 2020-01-14 |
| Guanitoxin, re-naming a cyanobacterial organophosphate toxin. | Marli Fátima Fiore, Stella Thomaz de Lima, Wayne W Carmichael, Shaun M K McKinnie, Jonathan R Chekan, Bradley S Moore | Harmful Algae | 2020-01-14 |
| Flower-like patterns in multi-species bacterial colonies. | Liyang Xiong, Yuansheng Cao, Robert Cooper, Wouter-Jan Rappel, Jeff Hasty, Lev Tsimring | ELife | 2020-01-14 |
| Microbial communities from Arctic marine sediments respond slowly to methane addition during ex situ enrichments. | Scott Klasek, Marta E Torres, Douglas H Bartlett, Madeline Tyler, Wei-Li Hong, Frederick Colwell | Environmental Microbiology | 2020-01-13 |
| Scaffold and Parasite Hopping: Discovery of New Protozoal Proliferation Inhibitors. | Baljinder Singh, Jean A Bernatchez, Laura-Isobel McCall, Claudia M Calvet, Jasmin Ackermann, Julia M Souza, Diane Thomas, Everton M Silva, Kelly A Bachovchin, Dana M Klug, Hitesh B Jalani, Seema Bag, Melissa J Buskes, Susan E Leed, Norma E Roncal, Erica C Penn, Jessey Erath, Ana Rodriguez, Richard J Sciotti, Robert F Campbell, James McKerrow, Jair L Siqueira-Neto, Lori Ferrins, Michael P Pollastri | ACS Medicinal Chemistry Letters | 2020-01-10 |
| Microbial Diversity in Clinical Microbiome Studies: Sample Size and Statistical Power Considerations. | Climent Casals-Pascual, Antonio González, Yoshiki Vázquez-Baeza, Se Jin Song, Lingjing Jiang, Rob Knight | Gastroenterology | 2020-01-10 |
| Cariogenic Produces Tetramic Acid Strain-Specific Antibiotics That Impair Commensal Colonization. | Xiaoyu Tang, Yuta Kudo, Jonathon L Baker, Sandra LaBonte, Peter A Jordan, Shaun M K McKinnie, Jian Guo, Tao Huan, Bradley S Moore, Anna Edlund | ACS Infectious Diseases | 2020-01-10 |
| HORMA Domain Proteins and a Trip13-like ATPase Regulate Bacterial cGAS-like Enzymes to Mediate Bacteriophage Immunity. | Qiaozhen Ye, Rebecca K Lau, Ian T Mathews, Erica A Birkholz, Jeramie D Watrous, Camillia S Azimi, Joe Pogliano, Mohit Jain, Kevin D Corbett | Molecular Cell | 2020-01-10 |
| Structure and Mechanism of a Cyclic Trinucleotide-Activated Bacterial Endonuclease Mediating Bacteriophage Immunity. | Rebecca K Lau, Qiaozhen Ye, Erica A Birkholz, Kyle R Berg, Lucas Patel, Ian T Mathews, Jeramie D Watrous, Kaori Ego, Aaron T Whiteley, Brianna Lowey, John J Mekalanos, Philip J Kranzusch, Mohit Jain, Joe Pogliano, Kevin D Corbett | Molecular Cell | 2020-01-10 |
| The Fungal Pathogen Promotes Bladder Colonization of Group B . | Samuel R Shing, Anissa R Ramos, Kathryn A Patras, Angelica M Riestra, Sinead McCabe, Victor Nizet, Alison Coady | Frontiers In Cellular And Infection Microbiology | 2020-01-10 |
| Bacteriophage lambda overcomes a perturbation in its host-viral genetic network through mutualism and evolution of life history traits. | Animesh Gupta, Anechelle N Soto, Sarah J Medina, Katherine L Petrie, Justin R Meyer | Evolution; International Journal Of Organic Evolution | 2020-01-09 |
| Upon microbial challenge, human neutrophils undergo rapid changes in nuclear architecture and chromatin folding to orchestrate an immediate inflammatory gene program. | Matthew Denholtz, Yina Zhu, Zhaoren He, Hanbin Lu, Takeshi Isoda, Simon Döhrmann, Victor Nizet, Cornelis Murre | Genes & Development | 2020-01-09 |
| Breastmilk Lipids and Oligosaccharides Influence Branched Short-Chain Fatty Acid Concentrations in Infants with Excessive Weight Gain. | Ceyda Tugba Pekmez, Melanie Wange Larsson, Mads Vendelbo Lind, Natalia Vazquez Manjarrez, Chloe Yonemitsu, Anni Larnkjaer, Lars Bode, Christian Mølgaard, Kim F Michaelsen, Lars Ove Dragsted | Molecular Nutrition & Food Research | 2020-01-07 |
| Ceftolozane/Tazobactam in Neonates and Young Infants: The Challenges of Collecting Pharmacokinetics and Safety Data in This Vulnerable Patient Population. | Jocelyn Y Ang, Antonio Arrieta, John S Bradley, Zufei Zhang, Brian Yu, Matthew L Rizk, Matthew G Johnson, Elizabeth G Rhee | American Journal Of Perinatology | 2020-01-07 |
| Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats. | Se Jin Song, Jon G Sanders, Frédéric Delsuc, Jessica Metcalf, Katherine Amato, Michael W Taylor, Florent Mazel, Holly L Lutz, Kevin Winker, Gary R Graves, Gregory Humphrey, Jack A Gilbert, Shannon J Hackett, Kevin P White, Heather R Skeen, Sarah M Kurtis, Jack Withrow, Thomas Braile, Matthew Miller, Kevin G McCracken, James M Maley, Vanessa O Ezenwa, Allison Williams, Jessica M Blanton, Valerie J McKenzie, Rob Knight | MBio | 2020-01-07 |
| The Caenorhabditis elegans RIG-I Homolog DRH-1 Mediates the Intracellular Pathogen Response upon Viral Infection. | Jessica N Sowa, Hongbing Jiang, Lakshmi Somasundaram, Eillen Tecle, Guorong Xu, David Wang, Emily R Troemel | Journal Of Virology | 2020-01-06 |
| Mass spectrometry searches using MASST. | Mingxun Wang, Alan K Jarmusch, Fernando Vargas, Alexander A Aksenov, Julia M Gauglitz, Kelly Weldon, Daniel Petras, Ricardo da Silva, Robert Quinn, Alexey V Melnik, Justin J J van der Hooft, Andrés Mauricio Caraballo-Rodríguez, Louis Felix Nothias, Christine M Aceves, Morgan Panitchpakdi, Elizabeth Brown, Francesca Di Ottavio, Nicole Sikora, Emmanuel O Elijah, Lara Labarta-Bajo, Emily C Gentry, Shabnam Shalapour, Kathleen E Kyle, Sara P Puckett, Jeramie D Watrous, Carolina S Carpenter, Amina Bouslimani, Madeleine Ernst, Austin D Swafford, Elina I Zúñiga, Marcy J Balunas, Jonathan L Klassen, Rohit Loomba, Rob Knight, Nuno Bandeira, Pieter C Dorrestein | Nature Biotechnology | 2020-01-03 |
| miR-155 promotes T reg cell development by safeguarding medullary thymic epithelial cell maturation. | Jiayi Dong, Lindsey M Warner, Ling-Li Lin, Mei-Chi Chen, Ryan M O'Connell, Li-Fan Lu | The Journal Of Experimental Medicine | 2019-12-31 |
| Single-Cell Transcriptomics Reveal a Correlation between Genome Architecture and Gene Family Evolution in Ciliates. | Ying Yan, Xyrus X Maurer-Alcalá, Rob Knight, Sergei L Kosakovsky Pond, Laura A Katz | MBio | 2019-12-24 |
| Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B. | Ke Shi, Özlem Demir, Michael A Carpenter, Surajit Banerjee, Daniel A Harki, Rommie E Amaro, Reuben S Harris, Hideki Aihara | FASEB BioAdvances | 2019-12-24 |
| The emergence of microbiome centres. | Jennifer B H Martiny, Katrine L Whiteson, Brendan J M Bohannan, Lawrence A David, Nicole A Hynson, Margaret McFall-Ngai, John F Rawls, Thomas M Schmidt, Zaid Abdo, Martin J Blaser, Seth Bordenstein, Christian Bréchot, Carolee T Bull, Pieter Dorrestein, Jonathan A Eisen, Ferran Garcia-Pichel, Jack Gilbert, Kirsten S Hofmockel, Mary L Holtz, Rob Knight, David B Mark Welch, Daniel McDonald, Barbara Methé, Nigel J Mouncey, Noel T Mueller, Catherine A Pfister, Lita Proctor, Joel L Sachs | Nature Microbiology | 2019-12-21 |
| Systems-level analysis of NalD mutation, a recurrent driver of rapid drug resistance in acute Pseudomonas aeruginosa infection. | Jinyuan Yan, Henri Estanbouli, Chen Liao, Wook Kim, Jonathan M Monk, Rayees Rahman, Mini Kamboj, Bernhard O Palsson, Weigang Qiu, Joao B Xavier | PLoS Computational Biology | 2019-12-20 |
| Microbial biogeography and ecology of the mouth and implications for periodontal diseases. | Diana M Proctor, Katie M Shelef, Antonio Gonzalez, Clara L Davis, Les Dethlefsen, Adam R Burns, Peter M Loomer, Gary C Armitage, Mark I Ryder, Meredith E Millman, Rob Knight, Susan P Holmes, David A Relman | Periodontology 2000 | 2019-12-19 |
| Enzyme-powered Janus platelet cell robots for active and targeted drug delivery. | Songsong Tang, Fangyu Zhang, Hua Gong, Fanan Wei, Jia Zhuang, Emil Karshalev, Berta Esteban-Fernández de Ávila, Chuying Huang, Zhidong Zhou, Zhengxing Li, Lu Yin, Haifeng Dong, Ronnie H Fang, Xueji Zhang, Liangfang Zhang, Joseph Wang | Science Robotics | 2019-12-18 |
| De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments. | Bahar Behsaz, Hosein Mohimani, Alexey Gurevich, Andrey Prjibelski, Mark Fisher, Fernando Vargas, Larry Smarr, Pieter C Dorrestein, Joshua S Mylne, Pavel A Pevzner | Cell Systems | 2019-12-18 |
| Structure of galactarate dehydratase, a new fold in an enolase involved in bacterial fitness after antibiotic treatment. | Monica Rosas-Lemus, George Minasov, Ludmilla Shuvalova, Zdzislaw Wawrzak, Olga Kiryukhina, Nathan Mih, Lukasz Jaroszewski, Bernhard Palsson, Adam Godzik, Karla J F Satchell | Protein Science : A Publication Of The Protein Society | 2019-12-17 |
| Profiling the effect of nafcillin on HA-MRSA D712 using bacteriological and physiological media. | Akanksha Rajput, Saugat Poudel, Hannah Tsunemoto, Michael Meehan, Richard Szubin, Connor A Olson, Anne Lamsa, Yara Seif, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M Monk, Pieter C Dorrestein, Rob Knight, Victor Nizet, Bernhard O Palsson, Adam M Feist, Joe Pogliano | Scientific Data | 2019-12-17 |
| A bacterial gene-drive system efficiently edits and inactivates a high copy number antibiotic resistance locus. | J Andrés Valderrama, Surashree S Kulkarni, Victor Nizet, Ethan Bier | Nature Communications | 2019-12-16 |
| MiR-23~27~24-mediated control of humoral immunity reveals a TOX-driven regulatory circuit in follicular helper T cell differentiation. | Cheng-Jang Wu, Sunglim Cho, Hsi-Yuan Huang, Chun-Hao Lu, Jasmin Russ, Leilani O Cruz, Flavia Franco da Cunha, Mei-Chi Chen, Ling-Li Lin, Lindsey M Warner, Hsin-Kai Liao, Daniel T Utzschneider, Sara Quon, Jacqueline Berner, Niels Olsen Saraiva Camara, Dietmar Zehn, Juan Carlos Izpisua Belmonte, Li-Chen Chen, Shiang-Fu Huang, Ming-Ling Kuo, Li-Fan Lu | Science Advances | 2019-12-11 |
| The Microbiome and Its Potential for Pharmacology. | Aries Chavira, Pedro Belda-Ferre, Tomasz Kosciolek, Farhana Ali, Pieter C Dorrestein, Rob Knight | Handbook Of Experimental Pharmacology | 2019-12-11 |
| Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli. | Bin Du, Laurence Yang, Colton J Lloyd, Xin Fang, Bernhard O Palsson | PLoS Computational Biology | 2019-12-06 |
| Immune Dysregulation in the Tonsillar Microenvironment of Periodic Fever, Aphthous Stomatitis, Pharyngitis, Adenitis (PFAPA) Syndrome. | Irene Luu, Anukriti Sharma, Marisela Guaderrama, Michelle Peru, Javan Nation, Nathan Page, Daniela Carvalho, Anthony Magit, Wen Jiang, Shelby Leuin, Morgan Bliss, Marcella Bothwell, Matthew Brigger, Donald Kearns, Robert Newbury, Seth Pransky, Jack A Gilbert, Lori Broderick | Journal Of Clinical Immunology | 2019-12-05 |
| Siglec-14 Enhances NLRP3-Inflammasome Activation in Macrophages. | Chih-Ming Tsai, Angelica M Riestra, Syed Raza Ali, Jerry J Fong, Janet Z Liu, Gillian Hughes, Ajit Varki, Victor Nizet | Journal Of Innate Immunity | 2019-12-05 |
| The Escherichia coli transcriptome mostly consists of independently regulated modules. | Anand V Sastry, Ye Gao, Richard Szubin, Ying Hefner, Sibei Xu, Donghyuk Kim, Kumari Sonal Choudhary, Laurence Yang, Zachary A King, Bernhard O Palsson | Nature Communications | 2019-12-04 |
| Type I IFNs and CD8 T cells increase intestinal barrier permeability after chronic viral infection. | Lara Labarta-Bajo, Steven P Nilsen, Gregory Humphrey, Tara Schwartz, Karenina Sanders, Austin Swafford, Rob Knight, Jerrold R Turner, Elina I Zúñiga | The Journal Of Experimental Medicine | 2019-12-03 |
| Statistics of correlated percolation in a bacterial community. | Xiaoling Zhai, Joseph W Larkin, Kaito Kikuchi, Samuel E Redford, Ushasi Roy, Gürol M Süel, Andrew Mugler | PLoS Computational Biology | 2019-12-02 |
| Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea. | Qiyun Zhu, Uyen Mai, Wayne Pfeiffer, Stefan Janssen, Francesco Asnicar, Jon G Sanders, Pedro Belda-Ferre, Gabriel A Al-Ghalith, Evguenia Kopylova, Daniel McDonald, Tomasz Kosciolek, John B Yin, Shi Huang, Nimaichand Salam, Jian-Yu Jiao, Zijun Wu, Zhenjiang Z Xu, Kalen Cantrell, Yimeng Yang, Erfan Sayyari, Maryam Rabiee, James T Morton, Sheila Podell, Dan Knights, Wen-Jun Li, Curtis Huttenhower, Nicola Segata, Larry Smarr, Siavash Mirarab, Rob Knight | Nature Communications | 2019-12-02 |
| Gadoxetate-enhanced Abbreviated MRI for Hepatocellular Carcinoma Surveillance: Preliminary Experience. | Ryan L Brunsing, Dennis H Chen, Alexandra Schlein, Tanya Wolfson, Anthony Gamst, Adrija Mamidipalli, Naik Vietti Violi, Robert M Marks, Bachir Taouli, Rohit Loomba, Yuko Kono, Claude B Sirlin | Radiology. Imaging Cancer | 2019-11-29 |
| A Novel Mouse Model of Acute-on-Chronic Cholestatic Alcoholic Liver Disease: A Systems Biology Comparison With Human Alcoholic Hepatitis. | Shinji Furuya, Josepmaria Argemi, Takeki Uehara, Yuuki Katou, Derrick E Fouts, Bernd Schnabl, Laurent Dubuquoy, Abha Belorkar, Rajanikanth Vadigepalli, Hiroshi Kono, Ramon Bataller, Ivan Rusyn | Alcoholism, Clinical And Experimental Research | 2019-11-28 |
| Investigating bifidobacteria and human milk oligosaccharide composition of lactating mothers. | Gabriele Andrea Lugli, Sabrina Duranti, Christian Milani, Leonardo Mancabelli, Francesca Turroni, Giulia Alessandri, Giulia Longhi, Rosaria Anzalone, Alice Viappinai, Chiara Tarracchini, Sergio Bernasconi, Chloe Yonemitsu, Lars Bode, Michael I Goran, Maria Cristina Ossiprandi, Douwe van Sinderen, Marco Ventura | FEMS Microbiology Ecology | 2019-11-27 |
| Nod-like receptors are critical for gut-brain axis signalling in mice. | Matteo M Pusceddu, Mariana Barboza, Ciara E Keogh, Melinda Schneider, Patricia Stokes, Jessica A Sladek, Hyun Jung D Kim, Cristina Torres-Fuentes, Lily R Goldfild, Shane E Gillis, Ingrid Brust-Mascher, Gonzalo Rabasa, Kyle A Wong, Carlito Lebrilla, Mariana X Byndloss, Charles Maisonneuve, Andreas J Bäumler, Dana J Philpott, Richard L Ferrero, Kim E Barrett, Colin Reardon, Mélanie G Gareau | The Journal Of Physiology | 2019-11-27 |
| Urinary tract infection in pediatrics: an overview. | Ana Cristina Simões E Silva, Eduardo A Oliveira, Robert H Mak | Jornal De Pediatria | 2019-11-26 |
| A mouse model for vitamin D-induced human cathelicidin antimicrobial peptide gene expression. | Malcolm B Lowry, Chunxiao Guo, Yang Zhang, Mary L Fantacone, Isabelle E Logan, Yan Campbell, Weijian Zhang, Mai Le, Arup K Indra, Gitali Ganguli-Indra, Jingwei Xie, Richard L Gallo, H Phillip Koeffler, Adrian F Gombart | The Journal Of Steroid Biochemistry And Molecular Biology | 2019-11-26 |
| Better executive function is independently associated with full HIV suppression during combination therapy. | Albert M Anderson, Josué Pérez-Santiago, Ziduo Zheng, Eugene Huang, Donald Franklin, Jennifer Iudicello, David J Moore, Ronald J Ellis, Robert K Heaton, Scott L Letendre | AIDS (London, England) | 2019-11-26 |
| Adaptive evolution reveals a tradeoff between growth rate and oxidative stress during naphthoquinone-based aerobic respiration. | Amitesh Anand, Ke Chen, Laurence Yang, Anand V Sastry, Connor A Olson, Saugat Poudel, Yara Seif, Ying Hefner, Patrick V Phaneuf, Sibei Xu, Richard Szubin, Adam M Feist, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2019-11-25 |
| PD-L1:CD80 Cis-Heterodimer Triggers the Co-stimulatory Receptor CD28 While Repressing the Inhibitory PD-1 and CTLA-4 Pathways. | Yunlong Zhao, Calvin K Lee, Chia-Hao Lin, Rodrigo B Gassen, Xiaozheng Xu, Zhe Huang, Changchun Xiao, Cristina Bonorino, Li-Fan Lu, Jack D Bui, Enfu Hui | Immunity | 2019-11-19 |
| Reproducibility, stability, and accuracy of microbial profiles by fecal sample collection method in three distinct populations. | Doratha A Byrd, Jun Chen, Emily Vogtmann, Autumn Hullings, Se Jin Song, Amnon Amir, Muhammad G Kibriya, Habibul Ahsan, Yu Chen, Heidi Nelson, Rob Knight, Jianxin Shi, Nicholas Chia, Rashmi Sinha | PloS One | 2019-11-18 |
| The Future of Microbiome-Based Therapeutics in Clinical Applications. | Anukriti Sharma, Promi Das, Mary Buschmann, Jack A Gilbert | Clinical Pharmacology And Therapeutics | 2019-11-15 |
| Safety, Tolerability, and Effects of Sodium Bicarbonate Inhalation in Cystic Fibrosis. | Carla Cristina Souza Gomez, Paloma Lopes Francisco Parazzi, Karl Jan Clinckspoor, Renan Marrichi Mauch, Francisco Benedito Teixeira Pessine, Carlos Emilio Levy, Andressa Oliveira Peixoto, Maria Ângela Gonçalves Oliveira Ribeiro, Antônio Fernando Ribeiro, Douglas Conrad, Paul Marquis Quinton, Fernando Augusto Lima Marson, José Dirceu Ribeiro | Clinical Drug Investigation | 2019-11-14 |
| Quantitative analysis of subsp proteome in response to antibiotics and during exposure to different environmental conditions. | Rajoana Rojony, Matthew Martin, Anaamika Campeau, Jacob M Wozniak, David J Gonzalez, Pankaj Jaiswal, L Danelishvili, Luiz E Bermudez | Clinical Proteomics | 2019-11-13 |
| Bacteriophage targeting of gut bacterium attenuates alcoholic liver disease. | Yi Duan, Cristina Llorente, Sonja Lang, Katharina Brandl, Huikuan Chu, Lu Jiang, Richard C White, Thomas H Clarke, Kevin Nguyen, Manolito Torralba, Yan Shao, Jinyuan Liu, Adriana Hernandez-Morales, Lauren Lessor, Imran R Rahman, Yukiko Miyamoto, Melissa Ly, Bei Gao, Weizhong Sun, Roman Kiesel, Felix Hutmacher, Suhan Lee, Meritxell Ventura-Cots, Francisco Bosques-Padilla, Elizabeth C Verna, Juan G Abraldes, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie L Shawcross, Samuel B Ho, Alexandre Louvet, Michael R Lucey, Philippe Mathurin, Guadalupe Garcia-Tsao, Ramon Bataller, Xin M Tu, Lars Eckmann, Wilfred A van der Donk, Ry Young, Trevor D Lawley, Peter Stärkel, David Pride, Derrick E Fouts, Bernd Schnabl | Nature | 2019-11-13 |
| Ecology and Host Identity Outweigh Evolutionary History in Shaping the Bat Microbiome. | Holly L Lutz, Elliot W Jackson, Paul W Webala, Waswa S Babyesiza, Julian C Kerbis Peterhans, Terrence C Demos, Bruce D Patterson, Jack A Gilbert | MSystems | 2019-11-12 |
| High-quality genome-scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities. | Juan Nogales, Joshua Mueller, Steinn Gudmundsson, Francisco J Canalejo, Estrella Duque, Jonathan Monk, Adam M Feist, Juan Luis Ramos, Wei Niu, Bernhard O Palsson | Environmental Microbiology | 2019-11-11 |
| Comparative Genomics and Metabolomics Analyses of Clavulanic Acid-Producing Species Provides Insight Into Specialized Metabolism. | Nader F AbuSara, Brandon M Piercey, Marcus A Moore, Arshad Ali Shaikh, Louis-Félix Nothias, Santosh K Srivastava, Pablo Cruz-Morales, Pieter C Dorrestein, Francisco Barona-Gómez, Kapil Tahlan | Frontiers In Microbiology | 2019-11-08 |
| Author Correction: Environmental stimuli drive a transition from cooperation to competition in synthetic phototrophic communities. | Cristal Zuñiga, Chien-Ting Li, Geng Yu, Mahmoud M Al-Bassam, Tingting Li, Liqun Jiang, Livia S Zaramela, Michael Guarnieri, Michael J Betenbaugh, Karsten Zengler | Nature Microbiology | 2019-11-07 |
| Learning representations of microbe-metabolite interactions. | James T Morton, Alexander A Aksenov, Louis Felix Nothias, James R Foulds, Robert A Quinn, Michelle H Badri, Tami L Swenson, Marc W Van Goethem, Trent R Northen, Yoshiki Vazquez-Baeza, Mingxun Wang, Nicholas A Bokulich, Aaron Watters, Se Jin Song, Richard Bonneau, Pieter C Dorrestein, Rob Knight | Nature Methods | 2019-11-04 |
| Home chemical and microbial transitions across urbanization. | Laura-Isobel McCall, Chris Callewaert, Qiyun Zhu, Se Jin Song, Amina Bouslimani, Jeremiah J Minich, Madeleine Ernst, Jean F Ruiz-Calderon, Humberto Cavallin, Henrique S Pereira, Atila Novoselac, Jean Hernandez, Rafael Rios, OraLee H Branch, Martin J Blaser, Luciana C Paulino, Pieter C Dorrestein, Rob Knight, Maria G Dominguez-Bello | Nature Microbiology | 2019-11-04 |
| Erythrocyte-Coated Nanoparticles Block Cytotoxic Effects of Group B β-Hemolysin/Cytolysin. | Jenny Koo, Tamara Escajadillo, Liangfang Zhang, Victor Nizet, Shelley M Lawrence | Frontiers In Pediatrics | 2019-11-01 |
| Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity. | Robert C Kaplan, Zheng Wang, Mykhaylo Usyk, Daniela Sotres-Alvarez, Martha L Daviglus, Neil Schneiderman, Gregory A Talavera, Marc D Gellman, Bharat Thyagarajan, Jee-Young Moon, Yoshiki Vázquez-Baeza, Daniel McDonald, Jessica S Williams-Nguyen, Michael C Wu, Kari E North, Justin Shaffer, Christopher C Sollecito, Qibin Qi, Carmen R Isasi, Tao Wang, Rob Knight, Robert D Burk | Genome Biology | 2019-11-01 |
| A generalized HIV vaccine design strategy for priming of broadly neutralizing antibody responses. | Jon M Steichen, Ying-Cing Lin, Colin Havenar-Daughton, Simone Pecetta, Gabriel Ozorowski, Jordan R Willis, Laura Toy, Devin Sok, Alessia Liguori, Sven Kratochvil, Jonathan L Torres, Oleksandr Kalyuzhniy, Eleonora Melzi, Daniel W Kulp, Sebastian Raemisch, Xiaozhen Hu, Steffen M Bernard, Erik Georgeson, Nicole Phelps, Yumiko Adachi, Michael Kubitz, Elise Landais, Jeffrey Umotoy, Amanda Robinson, Bryan Briney, Ian A Wilson, Dennis R Burton, Andrew B Ward, Shane Crotty, Facundo D Batista, William R Schief | Science (New York, N.Y.) | 2019-10-31 |
| Cost-Effectiveness Analysis of Screening for Hepatitis B Virus Infection in Patients With Solid Tumors Before Initiating Chemotherapy. | Gauree G Konijeti, Sirisha Grandhe, Monica Tincopa, Jill A Lane, Mark G Shrime, Siddharth Singh, Rohit Loomba | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2019-10-31 |
| Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads. | Jon G Sanders, Sergey Nurk, Rodolfo A Salido, Jeremiah Minich, Zhenjiang Z Xu, Qiyun Zhu, Cameron Martino, Marcus Fedarko, Timothy D Arthur, Feng Chen, Brigid S Boland, Greg C Humphrey, Caitriona Brennan, Karenina Sanders, James Gaffney, Kristen Jepsen, Mahdieh Khosroheidari, Cliff Green, Marlon Liyanage, Jason W Dang, Vanessa V Phelan, Robert A Quinn, Anton Bankevich, John T Chang, Tariq M Rana, Douglas J Conrad, William J Sandborn, Larry Smarr, Pieter C Dorrestein, Pavel A Pevzner, Rob Knight | Genome Biology | 2019-10-31 |
| Neighborhoods to Nucleotides - Advances and gaps for an obesity disparities systems epidemiology model. | Marta M Jankowska, Kyle Gaulton, Rob Knight, Kevin Patrick, Dorothy D Sears | Current Epidemiology Reports | 2019-10-30 |
| Interplay of Staphylococcal and Host Proteases Promotes Skin Barrier Disruption in Netherton Syndrome. | Michael R Williams, Laura Cau, Yichen Wang, Drishti Kaul, James A Sanford, Livia S Zaramela, Shadi Khalil, Anna M Butcher, Karsten Zengler, Alexander R Horswill, Christopher L Dupont, Alain Hovnanian, Richard L Gallo | Cell Reports | 2019-10-29 |
| OxyR Is a Convergent Target for Mutations Acquired during Adaptation to Oxidative Stress-Prone Metabolic States. | Amitesh Anand, Ke Chen, Edward Catoiu, Anand V Sastry, Connor A Olson, Troy E Sandberg, Yara Seif, Sibei Xu, Richard Szubin, Laurence Yang, Adam M Feist, Bernhard O Palsson | Molecular Biology And Evolution | 2019-10-28 |
| Western Diet Promotes Intestinal Colonization by Collagenolytic Microbes and Promotes Tumor Formation After Colorectal Surgery. | Sara Gaines, Jasper B van Praagh, Ashley J Williamson, Richard A Jacobson, Sanjiv Hyoju, Alexander Zaborin, Jun Mao, Hyun Y Koo, Lindsay Alpert, Marc Bissonnette, Ralph Weichselbaum, Jack Gilbert, Eugene Chang, Neil Hyman, Olga Zaborina, Benjamin D Shogan, John C Alverdy | Gastroenterology | 2019-10-23 |
| Reply to Kalil et al., "Is Daptomycin plus Ceftaroline Associated with Better Clinical Outcomes than Standard of Care Monotherapy for Staphylococcus aureus Bacteremia?" | George Sakoulas, Matthew Geriak, Fadi Haddad, Warren Rose, Kerry LaPlante, Marcus Zervos, Ravina Kullar, Victor Nizet | Antimicrobial Agents And Chemotherapy | 2019-10-22 |
| Pass-back chain extension expands multimodular assembly line biosynthesis. | Jia Jia Zhang, Xiaoyu Tang, Tao Huan, Avena C Ross, Bradley S Moore | Nature Chemical Biology | 2019-10-21 |
| Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0. | Eric W Deutsch, Lydie Lane, Christopher M Overall, Nuno Bandeira, Mark S Baker, Charles Pineau, Robert L Moritz, Fernando Corrales, Sandra Orchard, Jennifer E Van Eyk, Young-Ki Paik, Susan T Weintraub, Yves Vandenbrouck, Gilbert S Omenn | Journal Of Proteome Research | 2019-10-21 |
| Adaptive laboratory evolution of under acid stress. | Bin Du, Connor A Olson, Anand V Sastry, Xin Fang, Patrick V Phaneuf, Ke Chen, Muyao Wu, Richard Szubin, Sibei Xu, Ye Gao, Ying Hefner, Adam M Feist, Bernhard O Palsson | Microbiology (Reading, England) | 2019-10-18 |
| Protocol for community-created public MS/MS reference spectra within the Global Natural Products Social Molecular Networking infrastructure. | Fernando Vargas, Kelly C Weldon, Nicole Sikora, Mingxun Wang, Zheng Zhang, Emily C Gentry, Morgan W Panitchpakdi, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein, Alan K Jarmusch | Rapid Communications In Mass Spectrometry : RCM | 2019-10-17 |
| Strain-Specific Metabolic Requirements Revealed by a Defined Minimal Medium for Systems Analyses of . | Henrique Machado, Liam L Weng, Nicholas Dillon, Yara Seif, Michelle Holland, Jonathan E Pekar, Jonathan M Monk, Victor Nizet, Bernhard O Palsson, Adam M Feist | Applied And Environmental Microbiology | 2019-10-16 |
| MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities. | Liu Cao, Alexey Gurevich, Kelsey L Alexander, C Benjamin Naman, Tiago Leão, Evgenia Glukhov, Tal Luzzatto-Knaan, Fernando Vargas, Robby Quinn, Amina Bouslimani, Louis Felix Nothias, Nitin K Singh, Jon G Sanders, Rodolfo A S Benitez, Luke R Thompson, Md-Nafiz Hamid, James T Morton, Alla Mikheenko, Alexander Shlemov, Anton Korobeynikov, Iddo Friedberg, Rob Knight, Kasthuri Venkateswaran, William H Gerwick, Lena Gerwick, Pieter C Dorrestein, Pavel A Pevzner, Hosein Mohimani | Cell Systems | 2019-10-16 |
| miRNA-Microbiota Interaction in Gut Homeostasis and Colorectal Cancer. | Jiayi Dong, Jesse W Tai, Li-Fan Lu | Trends In Cancer | 2019-10-14 |
| Ultrahigh-Density Screens for Genome-Wide Yeast EMAPs in a Single Plate. | Katherine Licon, John Paul Shen, Brenton P Munson, Manuel Michaca, Cole Fassino, Luke Fassino, Jason F Kreisberg, Trey Ideker | Methods In Molecular Biology (Clifton, N.J.) | 2019-10-12 |
| Proteomic atlas of organ vasculopathies triggered by Staphylococcus aureus sepsis. | Alejandro Gómez Toledo, Gregory Golden, Alexandre Rosa Campos, Hector Cuello, James Sorrentino, Nathan Lewis, Nissi Varki, Victor Nizet, Jeffrey W Smith, Jeffrey D Esko | Nature Communications | 2019-10-11 |
| Species abundance information improves sequence taxonomy classification accuracy. | Benjamin D Kaehler, Nicholas A Bokulich, Daniel McDonald, Rob Knight, J Gregory Caporaso, Gavin A Huttley | Nature Communications | 2019-10-11 |
| The Candida albicans exotoxin candidalysin promotes alcohol-associated liver disease. | Huikuan Chu, Yi Duan, Sonja Lang, Lu Jiang, Yanhan Wang, Cristina Llorente, Jinyuan Liu, Selene Mogavero, Francisco Bosques-Padilla, Juan G Abraldes, Victor Vargas, Xin M Tu, Ling Yang, Xiaohua Hou, Bernhard Hube, Peter Stärkel, Bernd Schnabl | Journal Of Hepatology | 2019-10-10 |
| Letter: probiotics? Yes, but which ones? Authors' reply. | Saumya Jayakumar, Rohit Loomba | Alimentary Pharmacology & Therapeutics | 2019-10-09 |
| Increases in compulsivity, inflammation, and neural injury in HIV transgenic rats with escalated methamphetamine self-administration under extended-access conditions. | Giordano de Guglielmo, Yu Fu, Jihuan Chen, Estefania Larrosa, Ivy Hoang, Tomoya Kawamura, Irene Lorrai, Barry Zorman, Joseph Bryant, Olivier George, Pavel Sumazin, Celine Lefebvre, Vez Repunte-Canonigo, Pietro Paolo Sanna | Brain Research | 2019-10-09 |
| Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny. | Katherine R Amato, Elizabeth K Mallott, Daniel McDonald, Nathaniel J Dominy, Tony Goldberg, Joanna E Lambert, Larissa Swedell, Jessica L Metcalf, Andres Gomez, Gillian A O Britton, Rebecca M Stumpf, Steven R Leigh, Rob Knight | Genome Biology | 2019-10-08 |
| Metaviral SPAdes: assembly of viruses from metagenomic data. | Dmitry Antipov, Mikhail Raiko, Alla Lapidus, Pavel A Pevzner | Bioinformatics (Oxford, England) | 2019-10-08 |
| Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom. | Sarah R Smith, Chris L Dupont, James K McCarthy, Jared T Broddrick, Miroslav Oborník, Aleš Horák, Zoltán Füssy, Jaromír Cihlář, Sabrina Kleessen, Hong Zheng, John P McCrow, Kim K Hixson, Wagner L Araújo, Adriano Nunes-Nesi, Alisdair Fernie, Zoran Nikoloski, Bernhard O Palsson, Andrew E Allen | Nature Communications | 2019-10-07 |
| Environmental stimuli drive a transition from cooperation to competition in synthetic phototrophic communities. | Cristal Zuñiga, Chien-Ting Li, Geng Yu, Mahmoud M Al-Bassam, Tingting Li, Liqun Jiang, Livia S Zaramela, Michael Guarnieri, Michael J Betenbaugh, Karsten Zengler | Nature Microbiology | 2019-10-07 |
| Wirelessly observed therapy compared to directly observed therapy to confirm and support tuberculosis treatment adherence: A randomized controlled trial. | Sara H Browne, Anya Umlauf, Amanda J Tucker, Julie Low, Kathleen Moser, Jonathan Gonzalez Garcia, Charles A Peloquin, Terrence Blaschke, Florin Vaida, Constance A Benson | PLoS Medicine | 2019-10-04 |
| Discovery of New Inhibitors of Hepatitis C Virus NS3/4A Protease and Its D168A Mutant. | Ittipat Meewan, Xingquan Zhang, Suchismita Roy, Carlo Ballatore, Anthony J O'Donoghue, Robert T Schooley, Ruben Abagyan | ACS Omega | 2019-10-02 |
| Letrozole treatment of pubertal female mice results in activational effects on reproduction, metabolism and the gut microbiome. | Pablo Arroyo, Bryan S Ho, Lillian Sau, Scott T Kelley, Varykina G Thackray | PloS One | 2019-09-30 |
| Voices in methods development. | Polina Anikeeva, Edward Boyden, Clifford Brangwynne, Ibrahim I Cissé, Oliver Fiehn, Petra Fromme, Anne-Claude Gingras, Casey S Greene, Edith Heard, Stefan W Hell, Elizabeth Hillman, Grant Jay Jensen, Rachel Karchin, Laura L Kiessling, Benjamin P Kleinstiver, Rob Knight, Philipp Kukura, Madeline A Lancaster, Nicholas Loman, Loren Looger, Emma Lundberg, Qingming Luo, Atsushi Miyawaki, Eugene W Myers, Garry P Nolan, Paola Picotti, Wolf Reik, Markus Sauer, Alex K Shalek, Jay Shendure, Nikolai Slavov, Amos Tanay, Olga Troyanskaya, David van Valen, Hong-Wei Wang, Chengqi Yi, Peng Yin, Magdalena Zernicka-Goetz, Xiaowei Zhuang | Nature Methods | 2019-09-29 |
| Utilizing genome-scale models to optimize nutrient supply for sustained algal growth and lipid productivity. | Chien-Ting Li, Jacob Yelsky, Yiqun Chen, Cristal Zuñiga, Richard Eng, Liqun Jiang, Alison Shapiro, Kai-Wen Huang, Karsten Zengler, Michael J Betenbaugh | NPJ Systems Biology And Applications | 2019-09-24 |
| Altered Gut Microbiota and Host Metabolite Profiles in Women With Human Immunodeficiency Virus. | Zheng Wang, Mykhaylo Usyk, Christopher C Sollecito, Yunping Qiu, Jessica Williams-Nguyen, Simin Hua, Ana Gradissimo, Tao Wang, Xiaonan Xue, Irwin J Kurland, Klaus Ley, Alan L Landay, Kathryn Anastos, Rob Knight, Robert C Kaplan, Robert D Burk, Qibin Qi | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2019-09-24 |
| Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis. | Alexey V Melnik, Yoshiki Vázquez-Baeza, Alexander A Aksenov, Embriette Hyde, Andrew C McAvoy, Mingxun Wang, Ricardo R da Silva, Ivan Protsyuk, Jason V Wu, Amina Bouslimani, Yan Wei Lim, Tal Luzzatto-Knaan, William Comstock, Robert A Quinn, Richard Wong, Greg Humphrey, Gail Ackermann, Timothy Spivey, Sharon S Brouha, Nuno Bandeira, Grace Y Lin, Forest Rohwer, Douglas J Conrad, Theodore Alexandrov, Rob Knight, Pieter C Dorrestein, Neha Garg | MSystems | 2019-09-24 |
| Acoustic Nanomotors for Detection of Human Papillomavirus-Associated Head and Neck Cancer. | Jesse R Qualliotine, Gulcin Bolat, Mara Beltrán-Gastélum, Berta Esteban-Fernández de Ávila, Joseph Wang, Joseph A Califano | Otolaryngology--head And Neck Surgery : Official Journal Of American Academy Of Otolaryngology-Head And Neck Surgery | 2019-09-24 |
| Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates. | Livia S Zaramela, Cameron Martino, Frederico Alisson-Silva, Steven D Rees, Sandra L Diaz, Léa Chuzel, Mehul B Ganatra, Christopher H Taron, Patrick Secrest, Cristal Zuñiga, Jianbo Huang, Dionicio Siegel, Geoffrey Chang, Ajit Varki, Karsten Zengler | Nature Microbiology | 2019-09-23 |
| Grindr Users Take More Risks, but Are More Open to Human Immunodeficiency Virus (HIV) Pre-exposure Prophylaxis: Could This Dating App Provide a Platform for HIV Prevention Outreach? | Martin Hoenigl, Susan J Little, David Grelotti, Britt Skaathun, Gabriel A Wagner, Nadir Weibel, Jamila K Stockman, Davey M Smith | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2019-09-20 |
| Computationally Designed Peptides for Zika Virus Detection: An Incremental Construction Approach. | Marcello Mascini, Emre Dikici, Marta Robles Mañueco, Julio A Perez-Erviti, Sapna K Deo, Dario Compagnone, Joseph Wang, José M Pingarrón, Sylvia Daunert | Biomolecules | 2019-09-17 |
| Multiple genes recruited from hormone pathways partition maize diterpenoid defences. | Yezhang Ding, Katherine M Murphy, Elly Poretsky, Sibongile Mafu, Bing Yang, Si Nian Char, Shawn A Christensen, Evan Saldivar, Mengxi Wu, Qiang Wang, Lexiang Ji, Robert J Schmitz, Karl A Kremling, Edward S Buckler, Zhouxin Shen, Steven P Briggs, Jörg Bohlmann, Andrew Sher, Gabriel Castro-Falcon, Chambers C Hughes, Alisa Huffaker, Philipp Zerbe, Eric A Schmelz | Nature Plants | 2019-09-16 |
| Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome. | Carrie E Jung, Jessica Chopyk, Ji Hyun Shin, Emily S Lukacz, Linda Brubaker, Leila K Schwanemann, Rob Knight, Alan J Wolfe, David T Pride | Scientific Reports | 2019-09-16 |
| Molecular Docking of Broad-Spectrum Antibodies on Hemagglutinins of Influenza A Virus. | Khanh Pb Le, Phuc-Chau Do, Rommie E Amaro, Ly Le | Evolutionary Bioinformatics Online | 2019-09-16 |
| Macrocyclic colibactin induces DNA double-strand breaks via copper-mediated oxidative cleavage. | Zhong-Rui Li, Jie Li, Wenlong Cai, Jennifer Y H Lai, Shaun M K McKinnie, Wei-Peng Zhang, Bradley S Moore, Wenjun Zhang, Pei-Yuan Qian | Nature Chemistry | 2019-09-16 |
| The effect of legume supplementation on the gut microbiota in rural Malawian infants aged 6 to 12 months. | M Isabel Ordiz, Stefan Janssen, Greg Humphrey, Gail Ackermann, Kevin Stephenson, Sophia Agapova, Oscar Divala, Yankho Kaimila, Ken Maleta, Caroline Zhong, Rob Knight, Indi Trehan, Phillip I Tarr, Brigida Rusconi, Mark J Manary | The American Journal Of Clinical Nutrition | 2019-09-14 |
| TADA: phylogenetic augmentation of microbiome samples enhances phenotype classification. | Erfan Sayyari, Ban Kawas, Siavash Mirarab | Bioinformatics (Oxford, England) | 2019-09-13 |
| Response to Comment on "A commensal strain of protects against skin neoplasia" by Nakatsuji . | Teruaki Nakatsuji, William Fenical, Richard L Gallo | Science Advances | 2019-09-11 |
| Modification of RSF1010-Based Broad-Host-Range Plasmids for Improved Conjugation and Cyanobacterial Bioprospecting. | Bryan Bishé, Arnaud Taton, James W Golden | IScience | 2019-09-10 |
| The Virome of Cerebrospinal Fluid: Viruses Where We Once Thought There Were None. | Chandrabali Ghose, Melissa Ly, Leila K Schwanemann, Ji Hyun Shin, Katayoon Atab, Jeremy J Barr, Mark Little, Robert T Schooley, Jessica Chopyk, David T Pride | Frontiers In Microbiology | 2019-09-06 |
| Challenges in the construction of knowledge bases for human microbiome-disease associations. | Varsha Dave Badal, Dustin Wright, Yannis Katsis, Ho-Cheol Kim, Austin D Swafford, Rob Knight, Chun-Nan Hsu | Microbiome | 2019-09-05 |
| Expanding the scope and scale of microbiome research. | Rob Knight, Ruth E Ley, Jeroen Raes, Elizabeth A Grice | Genome Biology | 2019-09-05 |
| Gut microbiome in serious mental illnesses: A systematic review and critical evaluation. | Tanya T Nguyen, Hugh Hathaway, Tomasz Kosciolek, Rob Knight, Dilip V Jeste | Schizophrenia Research | 2019-09-05 |
| Sialic acid-binding immunoglobulin-like lectins (Siglecs) detect self-associated molecular patterns to regulate immune responses. | Heinz Läubli, Ajit Varki | Cellular And Molecular Life Sciences : CMLS | 2019-09-04 |
| The Origin, Succession, and Predicted Metabolism of Bacterial Communities Associated with Leaf Decomposition. | Sara L Jackrel, Jack A Gilbert, J Timothy Wootton | MBio | 2019-09-03 |
| Microbial Exchange via Fomites and Implications for Human Health. | Brent Stephens, Parham Azimi, Megan S Thoemmes, Mohammad Heidarinejad, Joseph G Allen, Jack A Gilbert | Current Pollution Reports | 2019-08-31 |
| Comparing Analytical Methods for the Gut Microbiome and Aging: Gut Microbial Communities and Body Weight in the Osteoporotic Fractures in Men (MrOS) Study. | Michelle Shardell, Neeta Parimi, Lisa Langsetmo, Toshiko Tanaka, Lingjing Jiang, Eric Orwoll, James M Shikany, Deborah M Kado, Peggy M Cawthon | The Journals Of Gerontology. Series A, Biological Sciences And Medical Sciences | 2019-08-30 |
| Cytotoxic Microcolin Lipopeptides from the Marine Cyanobacterium . | Hao-Bing Yu, Evgenia Glukhov, Yueying Li, Arihiro Iwasaki, Lena Gerwick, Pieter C Dorrestein, Bing-Hua Jiao, William H Gerwick | Journal Of Natural Products | 2019-08-30 |
| Author Correction: Immune-orthogonal orthologues of AAV capsids and of Cas9 circumvent the immune response to the administration of gene therapy. | Ana M Moreno, Nathan Palmer, Fernando Alemán, Genghao Chen, Andrew Pla, Ning Jiang, Wei Leong Chew, Mansun Law, Prashant Mali | Nature Biomedical Engineering | 2019-08-29 |
| Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons. | Baozhan Wang, Wei Qin, Yi Ren, Xue Zhou, Man-Young Jung, Ping Han, Emiley A Eloe-Fadrosh, Meng Li, Yue Zheng, Lu Lu, Xin Yan, Junbin Ji, Yang Liu, Linmeng Liu, Cheryl Heiner, Richard Hall, Willm Martens-Habbena, Craig W Herbold, Sung-Keun Rhee, Douglas H Bartlett, Li Huang, Anitra E Ingalls, Michael Wagner, David A Stahl, Zhongjun Jia | The ISME Journal | 2019-08-28 |
| Systems Biology and Pangenome of O-Antigens. | Yara Seif, Jonathan M Monk, Henrique Machado, Erol Kavvas, Bernhard O Palsson | MBio | 2019-08-27 |
| Precise in vivo genome editing via single homology arm donor mediated intron-targeting gene integration for genetic disease correction. | Keiichiro Suzuki, Mako Yamamoto, Reyna Hernandez-Benitez, Zhe Li, Christopher Wei, Rupa Devi Soligalla, Emi Aizawa, Fumiyuki Hatanaka, Masakazu Kurita, Pradeep Reddy, Alejandro Ocampo, Tomoaki Hishida, Masahiro Sakurai, Amy N Nemeth, Estrella Nuñez Delicado, Josep M Campistol, Pierre Magistretti, Pedro Guillen, Concepcion Rodriguez Esteban, Jianhui Gong, Yilin Yuan, Ying Gu, Guang-Hui Liu, Carlos López-Otín, Jun Wu, Kun Zhang, Juan Carlos Izpisua Belmonte | Cell Research | 2019-08-23 |
| TreeCluster: Clustering biological sequences using phylogenetic trees. | Metin Balaban, Niema Moshiri, Uyen Mai, Xingfan Jia, Siavash Mirarab | PloS One | 2019-08-22 |
| Functional and Proteomic Analysis of Virulence Upon Loss of Its Native Cas9 Nuclease. | Nina J Gao, Mahmoud M Al-Bassam, Saugat Poudel, Jacob M Wozniak, David J Gonzalez, Joshua Olson, Karsten Zengler, Victor Nizet, J Andrés Valderrama | Frontiers In Microbiology | 2019-08-22 |
| Antigen-Specific Mucosal Immunity Regulates Development of Intestinal Bacteria-Mediated Diseases. | Kosuke Fujimoto, Yunosuke Kawaguchi, Masaki Shimohigoshi, Yoshiyuki Gotoh, Yoshiko Nakano, Yuki Usui, Tetsuya Hayashi, Yasumasa Kimura, Miho Uematsu, Takuya Yamamoto, Yukihiro Akeda, Joon Haeng Rhee, Yoshikazu Yuki, Ken J Ishii, Sheila E Crowe, Peter B Ernst, Hiroshi Kiyono, Satoshi Uematsu | Gastroenterology | 2019-08-21 |
| A Microbiome-Based Index for Assessing Skin Health and Treatment Effects for Atopic Dermatitis in Children. | Zheng Sun, Shi Huang, Pengfei Zhu, Feng Yue, Helen Zhao, Ming Yang, Yueqing Niu, Gongchao Jing, Xiaoquan Su, Huiying Li, Chris Callewaert, Rob Knight, Jiquan Liu, Ed Smith, Karl Wei, Jian Xu | MSystems | 2019-08-20 |
| Intestinal Fungal Dysbiosis and Systemic Immune Response to Fungi in Patients With Alcoholic Hepatitis. | Sonja Lang, Yi Duan, Jinyuan Liu, Manolito G Torralba, Claire Kuelbs, Meritxell Ventura-Cots, Juan G Abraldes, Francisco Bosques-Padilla, Elizabeth C Verna, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie Shawcross, Michael R Lucey, Alexandre Louvet, Philippe Mathurin, Guadalupe Garcia-Tsao, Samuel B Ho, Xin M Tu, Ramon Bataller, Peter Stärkel, Derrick E Fouts, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2019-08-20 |
| Inactivation of a Mismatch-Repair System Diversifies Genotypic Landscape of During Adaptive Laboratory Evolution. | Minjeong Kang, Kangsan Kim, Donghui Choe, Suhyung Cho, Sun Chang Kim, Bernhard Palsson, Byung-Kwan Cho | Frontiers In Microbiology | 2019-08-16 |
| Invasive Pneumococcal Disease in Children's Hospitals: 2014-2017. | Sheldon L Kaplan, William J Barson, Philana Ling Lin, José R Romero, John S Bradley, Tina Q Tan, Pia S Pannaraj, Laurence B Givner, Kristina G Hulten | Pediatrics | 2019-08-16 |
| Retinoids Enhance the Expression of Cathelicidin Antimicrobial Peptide during Reactive Dermal Adipogenesis. | Marc C Liggins, Fengwu Li, Ling-Juan Zhang, Tatsuya Dokoshi, Richard L Gallo | Journal Of Immunology (Baltimore, Md. : 1950) | 2019-08-16 |
| A Network of SLC and ABC Transporter and DME Genes Involved in Remote Sensing and Signaling in the Gut-Liver-Kidney Axis. | Sara Brin Rosenthal, Kevin T Bush, Sanjay K Nigam | Scientific Reports | 2019-08-15 |
| Defining the relationship between vaginal and urinary microbiomes. | Yuko M Komesu, Darrell L Dinwiddie, Holly E Richter, Emily S Lukacz, Vivian W Sung, Nazema Y Siddiqui, Halina M Zyczynski, Beri Ridgeway, Rebecca G Rogers, Lily A Arya, Donna Mazloomdoost, Josh Levy, Benjamin Carper, Marie G Gantz, | American Journal Of Obstetrics And Gynecology | 2019-08-14 |
| Antibodies to Enteroviruses in Cerebrospinal Fluid of Patients with Acute Flaccid Myelitis. | Nischay Mishra, Terry Fei Fan Ng, Rachel L Marine, Komal Jain, James Ng, Riddhi Thakkar, Adrian Caciula, Adam Price, Joel A Garcia, Jane C Burns, Kiran T Thakur, Kimbell L Hetzler, Janell A Routh, Jennifer L Konopka-Anstadt, W Allan Nix, Rafal Tokarz, Thomas Briese, M Steven Oberste, W Ian Lipkin | MBio | 2019-08-13 |
| Age and Mothers: Potent Influences of Children's Skin Microbiota. | Ting Zhu, Xing Liu, Fan-Qi Kong, Yuan-Yuan Duan, Alyson L Yee, Madeline Kim, Carlos Galzote, Jack A Gilbert, Zhe-Xue Quan | The Journal Of Investigative Dermatology | 2019-08-13 |
| Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. | Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Gabriel A Al-Ghalith, Harriet Alexander, Eric J Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E Bisanz, Kyle Bittinger, Asker Brejnrod, Colin J Brislawn, C Titus Brown, Benjamin J Callahan, Andrés Mauricio Caraballo-Rodríguez, John Chase, Emily K Cope, Ricardo Da Silva, Christian Diener, Pieter C Dorrestein, Gavin M Douglas, Daniel M Durall, Claire Duvallet, Christian F Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M Gauglitz, Sean M Gibbons, Deanna L Gibson, Antonio Gonzalez, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin A Huttley, Stefan Janssen, Alan K Jarmusch, Lingjing Jiang, Benjamin D Kaehler, Kyo Bin Kang, Christopher R Keefe, Paul Keim, Scott T Kelley, Dan Knights, Irina Koester, Tomasz Kosciolek, Jorden Kreps, Morgan G I Langille, Joslynn Lee, Ruth Ley, Yong-Xin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J McIver, Alexey V Melnik, Jessica L Metcalf, Sydney C Morgan, Jamie T Morton, Ahmad Turan Naimey, Jose A Navas-Molina, Louis Felix Nothias, Stephanie B Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary Lai Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam Rivers, Michael S Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R Spear, Austin D Swafford, Luke R Thompson, Pedro J Torres, Pauline Trinh, Anupriya Tripathi, Peter J Turnbaugh, Sabah Ul-Hasan, Justin J J van der Hooft, Fernando Vargas, Yoshiki Vázquez-Baeza, Emily Vogtmann, Max von Hippel, William Walters, Yunhu Wan, Mingxun Wang, Jonathan Warren, Kyle C Weber, Charles H D Williamson, Amy D Willis, Zhenjiang Zech Xu, Jesse R Zaneveld, Yilong Zhang, Qiyun Zhu, Rob Knight, J Gregory Caporaso | Nature Biotechnology | 2019-08-11 |
| The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology. | Troy E Sandberg, Michael J Salazar, Liam L Weng, Bernhard O Palsson, Adam M Feist | Metabolic Engineering | 2019-08-08 |
| Helicobacter pylori Infection. Reply. | Sheila E Crowe | The New England Journal Of Medicine | 2019-08-08 |
| Perspective: Dietary Biomarkers of Intake and Exposure-Exploration with Omics Approaches. | Padma Maruvada, Johanna W Lampe, David S Wishart, Dinesh Barupal, Deirdra N Chester, Dylan Dodd, Yannick Djoumbou-Feunang, Pieter C Dorrestein, Lars O Dragsted, John Draper, Linda C Duffy, Johanna T Dwyer, Nancy J Emenaker, Oliver Fiehn, Robert E Gerszten, Frank B Hu, Robert W Karp, David M Klurfeld, Maren R Laughlin, A Roger Little, Christopher J Lynch, Steven C Moore, Holly L Nicastro, Diane M O'Brien, José M Ordovás, Stavroula K Osganian, Mary Playdon, Ross Prentice, Daniel Raftery, Nichole Reisdorph, Helen M Roche, Sharon A Ross, Shengmin Sang, Augustin Scalbert, Pothur R Srinivas, Steven H Zeisel | Advances In Nutrition (Bethesda, Md.) | 2019-08-07 |
| Reply to Sun et al., "Identifying Composition Novelty in Microbiome Studies: Improvement of Prediction Accuracy". | Xiaoquan Su, Gongchao Jing, Daniel McDonald, Honglei Wang, Zengbin Wang, Antonio Gonzalez, Zheng Sun, Shi Huang, Jose Navas, Rob Knight, Jian Xu | MBio | 2019-08-06 |
| Heterogenous Populations of Tissue-Resident CD8 T Cells Are Generated in Response to Infection and Malignancy. | J Justin Milner, Clara Toma, Zhaoren He, Nadia S Kurd, Quynh P Nguyen, Bryan McDonald, Lauren Quezada, Christella E Widjaja, Deborah A Witherden, John T Crowl, Laura A Shaw, Gene W Yeo, John T Chang, Kyla D Omilusik, Ananda W Goldrath | Immunity | 2019-08-04 |
| Photopiperazines A-D, Photosensitive Interconverting Diketopiperazines with Significant and Selective Activity against U87 Glioblastoma Cells, from a Rare, Marine-Derived Actinomycete of the Family Streptomycetaceae. | Min Cheol Kim, Reiko Cullum, Henrique Machado, Alexander J Smith, Inho Yang, Jeffrey J Rodvold, William Fenical | Journal Of Natural Products | 2019-08-01 |
| Targeting Interleukin(IL)-30/IL-27p28 signaling in cancer stem-like cells and host environment synergistically inhibits prostate cancer growth and improves survival. | Carlo Sorrentino, Zhinan Yin, Stefania Ciummo, Paola Lanuti, Li-Fan Lu, Marco Marchisio, Matteo Bellone, Emma Di Carlo | Journal For Immunotherapy Of Cancer | 2019-07-31 |
| Molecular characterization and functional analysis of the Schistosoma mekongi Ca-dependent cysteine protease (calpain). | Salisa Chaimon, Yanin Limpanont, Onrapak Reamtong, Sumate Ampawong, Orawan Phuphisut, Phiraphol Chusongsang, Jiraporn Ruangsittichai, Usa Boonyuen, Dorn Watthanakulpanich, Anthony J O'Donoghue, Conor R Caffrey, Poom Adisakwattana | Parasites & Vectors | 2019-07-30 |
| Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages. | Julia M Gauglitz, Christine M Aceves, Alexander A Aksenov, Gajender Aleti, Jehad Almaliti, Amina Bouslimani, Elizabeth A Brown, Anaamika Campeau, Andrés Mauricio Caraballo-Rodríguez, Rama Chaar, Ricardo R da Silva, Alyssa M Demko, Francesca Di Ottavio, Emmanuel Elijah, Madeleine Ernst, L Paige Ferguson, Xavier Holmes, Alan K Jarmusch, Lingjing Jiang, Kyo Bin Kang, Irina Koester, Brian Kwan, Jie Li, Yueying Li, Alexey V Melnik, Carlos Molina-Santiago, Bohan Ni, Aaron L Oom, Morgan W Panitchpakdi, Daniel Petras, Robert Quinn, Nicole Sikora, Katharina Spengler, Bahar Teke, Anupriya Tripathi, Sabah Ul-Hasan, Justin J J van der Hooft, Fernando Vargas, Alison Vrbanac, Anthony Q Vu, Steven C Wang, Kelly Weldon, Kayla Wilson, Jacob M Wozniak, Michael Yoon, Nuno Bandeira, Pieter C Dorrestein | Food Chemistry | 2019-07-30 |
| Microbial Similarity between Students in a Common Dormitory Environment Reveals the Forensic Potential of Individual Microbial Signatures. | Miles Richardson, Neil Gottel, Jack A Gilbert, Simon Lax | MBio | 2019-07-30 |
| Postoperative urinary tract infection after urogynecologic surgery: timing and uropathogens. | Carrie E Jung, Linda Brubaker | International Urogynecology Journal | 2019-07-29 |
| Long-lasting analgesia via targeted in situ repression of Na1.7 in mice. | Ana M Moreno, Fernando Alemán, Glaucilene F Catroli, Matthew Hunt, Michael Hu, Amir Dailamy, Andrew Pla, Sarah A Woller, Nathan Palmer, Udit Parekh, Daniella McDonald, Amanda J Roberts, Vanessa Goodwill, Ian Dryden, Robert F Hevner, Lauriane Delay, Gilson Gonçalves Dos Santos, Tony L Yaksh, Prashant Mali | Science Translational Medicine | 2019-07-28 |
| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. | Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Gabriel A Al-Ghalith, Harriet Alexander, Eric J Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E Bisanz, Kyle Bittinger, Asker Brejnrod, Colin J Brislawn, C Titus Brown, Benjamin J Callahan, Andrés Mauricio Caraballo-Rodríguez, John Chase, Emily K Cope, Ricardo Da Silva, Christian Diener, Pieter C Dorrestein, Gavin M Douglas, Daniel M Durall, Claire Duvallet, Christian F Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M Gauglitz, Sean M Gibbons, Deanna L Gibson, Antonio Gonzalez, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin A Huttley, Stefan Janssen, Alan K Jarmusch, Lingjing Jiang, Benjamin D Kaehler, Kyo Bin Kang, Christopher R Keefe, Paul Keim, Scott T Kelley, Dan Knights, Irina Koester, Tomasz Kosciolek, Jorden Kreps, Morgan G I Langille, Joslynn Lee, Ruth Ley, Yong-Xin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J McIver, Alexey V Melnik, Jessica L Metcalf, Sydney C Morgan, Jamie T Morton, Ahmad Turan Naimey, Jose A Navas-Molina, Louis Felix Nothias, Stephanie B Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary Lai Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam Rivers, Michael S Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R Spear, Austin D Swafford, Luke R Thompson, Pedro J Torres, Pauline Trinh, Anupriya Tripathi, Peter J Turnbaugh, Sabah Ul-Hasan, Justin J J van der Hooft, Fernando Vargas, Yoshiki Vázquez-Baeza, Emily Vogtmann, Max von Hippel, William Walters, Yunhu Wan, Mingxun Wang, Jonathan Warren, Kyle C Weber, Charles H D Williamson, Amy D Willis, Zhenjiang Zech Xu, Jesse R Zaneveld, Yilong Zhang, Qiyun Zhu, Rob Knight, J Gregory Caporaso | Nature Biotechnology | 2019-07-26 |
| Surprising synergy of dual translation inhibition vs. Acinetobacter baumannii and other multidrug-resistant bacterial pathogens. | Nicholas Dillon, Michelle Holland, Hannah Tsunemoto, Bryan Hancock, Ingrid Cornax, Joe Pogliano, George Sakoulas, Victor Nizet | EBioMedicine | 2019-07-25 |
| Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks. | Adam Rule, Amanda Birmingham, Cristal Zuniga, Ilkay Altintas, Shih-Cheng Huang, Rob Knight, Niema Moshiri, Mai H Nguyen, Sara Brin Rosenthal, Fernando Pérez, Peter W Rose | PLoS Computational Biology | 2019-07-25 |
| Modelling approaches for studying the microbiome. | Manish Kumar, Boyang Ji, Karsten Zengler, Jens Nielsen | Nature Microbiology | 2019-07-23 |
| Immune-orthogonal orthologues of AAV capsids and of Cas9 circumvent the immune response to the administration of gene therapy. | Ana M Moreno, Nathan Palmer, Fernando Alemán, Genghao Chen, Andrew Pla, Ning Jiang, Wei Leong Chew, Mansun Law, Prashant Mali | Nature Biomedical Engineering | 2019-07-22 |
| Author Correction: Farm-like indoor microbiota in non-farm homes protects children from asthma development. | Pirkka V Kirjavainen, Anne M Karvonen, Rachel I Adams, Martin Täubel, Marjut Roponen, Pauli Tuoresmäki, Georg Loss, Balamuralikrishna Jayaprakash, Martin Depner, Markus Johannes Ege, Harald Renz, Petra Ina Pfefferle, Bianca Schaub, Roger Lauener, Anne Hyvärinen, Rob Knight, Dick J J Heederik, Erika von Mutius, Juha Pekkanen | Nature Medicine | 2019-07-19 |
| Human Milk Oligosaccharide Composition Is Associated With Excessive Weight Gain During Exclusive Breastfeeding-An Explorative Study. | Melanie W Larsson, Mads V Lind, Rikke Pilmann Laursen, Chloe Yonemitsu, Anni Larnkjær, Christian Mølgaard, Kim F Michaelsen, Lars Bode | Frontiers In Pediatrics | 2019-07-18 |
| Safety and Efficacy of Ceftazidime-Avibactam Plus Metronidazole in the Treatment of Children ≥3 Months to <18 Years With Complicated Intra-Abdominal Infection: Results From a Phase 2, Randomized, Controlled Trial. | John S Bradley, Helen Broadhurst, Karen Cheng, Maria Mendez, Paul Newell, Martin Prchlik, Gregory G Stone, Angela K Talley, Margaret Tawadrous, Dalia Wajsbrot, Katrina Yates, Antonina Zuzova, Annie Gardner | The Pediatric Infectious Disease Journal | 2019-07-16 |
| MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools. | Madeleine Ernst, Kyo Bin Kang, Andrés Mauricio Caraballo-Rodríguez, Louis-Felix Nothias, Joe Wandy, Christopher Chen, Mingxun Wang, Simon Rogers, Marnix H Medema, Pieter C Dorrestein, Justin J J van der Hooft | Metabolites | 2019-07-16 |
| Inflammasome inhibition blocks cardiac glycoside cell toxicity. | Doris L LaRock, Jenna S Sands, Ethan Ettouati, Marine Richard, Paul J Bushway, Eric D Adler, Victor Nizet, Christopher N LaRock | Th |
Center for Microbiome Innovation
