These are the LAST 12 MONTHS of publications from the CMI membership team.
To see or search all of the publications, visit the archives page.
| Article | Authors | Journal | Date | Abstract | Reach |
|---|---|---|---|---|---|
| The transcription factor ZIP-1 promotes resistance to intracellular infection in Caenorhabditis elegans. | Vladimir Lažetić, Fengting Wu, Lianne B Cohen, Kirthi C Reddy, Ya-Ting Chang, Spencer S Gang, Gira Bhabha, Emily R Troemel | Nature Communications | 2022-01-10 | Abstract | |
| Comparative Analysis of T Cell Spatial Proteomics and the Influence of HIV Expression. | Aaron L Oom, Charlotte A Stoneham, Mary K Lewinski, Alicia Richards, Jacob M Wozniak, Km Shams-Ud-Doha, David J Gonzalez, Nevan J Krogan, John Guatelli | Molecular & Cellular Proteomics : MCP | 2022-01-08 | Abstract | |
| Roles for the Mycobiome in Liver Disease. | Suling Zeng, Bernd Schnabl | Liver International : Official Journal Of The International Association For The Study Of The Liver | 2022-01-07 | Abstract | |
| An intestinally secreted host factor promotes microsporidia invasion of . | Hala Tamim El Jarkass, Calvin Mok, Michael R Schertzberg, Andrew G Fraser, Emily R Troemel, Aaron W Reinke | ELife | 2022-01-07 | Abstract | |
| Human Milk Oligosaccharides Reduce Murine Group B Vaginal Colonization with Minimal Impact on the Vaginal Microbiota. | Marlyd E Mejia, Samantha Ottinger, Alison Vrbanac, Priyanka Babu, Jacob J Zulk, David Moorshead, Lars Bode, Victor Nizet, Kathryn A Patras | MSphere | 2022-01-05 | Abstract | |
| Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities. | Derek M Bickhart, Mikhail Kolmogorov, Elizabeth Tseng, Daniel M Portik, Anton Korobeynikov, Ivan Tolstoganov, Gherman Uritskiy, Ivan Liachko, Shawn T Sullivan, Sung Bong Shin, Alvah Zorea, Victòria Pascal Andreu, Kevin Panke-Buisse, Marnix H Medema, Itzhak Mizrahi, Pavel A Pevzner, Timothy P L Smith | Nature Biotechnology | 2022-01-03 | Abstract | |
| Chlororesistoflavins A and B, Chlorinated Benzopyrene Antibiotics Produced by the Marine-Derived Actinomycete sp. Strain EG32. | Min Cheol Kim, Zhifei Li, Reiko Cullum, Tadeusz F Molinski, Mennat Allah G Eid, Ali M S Hebishy, Ahmed H I Faraag, Ahmed E Abdel Moneim, Mohamed S Abdelfattah, William Fenical | Journal Of Natural Products | 2021-12-30 | Abstract | |
| Possibilities and limits for using the gut microbiome to improve captive animal health. | Jessica Diaz, Aspen T Reese | Animal Microbiome | 2021-12-29 | Abstract | |
| Extremophile enzyme optimization for low temperature and high salinity are fundamentally incompatible. | Luke Piszkin, Jeff Bowman | Extremophiles : Life Under Extreme Conditions | 2021-12-23 | Abstract | |
| Linking anaerobic gut bacteria and cardiovascular disease. | Joanna Coker, Livia S Zaramela, Karsten Zengler | Nature Microbiology | 2021-12-23 | Abstract | |
| Class Ib MHC-Mediated Immune Interactions Play a Critical Role in Maintaining Mucosal Homeostasis in the Mammalian Large Intestine. | Suryasarathi Dasgupta, Igor Maricic, Jay Tang, Stephen Wandro, Kelly Weldon, Carolina S Carpenter, Lars Eckmann, Jesus Rivera-Nieves, William Sandborn, Rob Knight, Peter Dorrestein, Austin D Swafford, Vipin Kumar | ImmunoHorizons | 2021-12-15 | Abstract | |
| Mammalian gut metabolomes mirror microbiome composition and host phylogeny. | Rachel Gregor, Maraike Probst, Stav Eyal, Alexander Aksenov, Goor Sasson, Igal Horovitz, Pieter C Dorrestein, Michael M Meijler, Itzhak Mizrahi | The ISME Journal | 2021-12-13 | Abstract | |
| Brilliantia kiribatiensis, a new genus and species of Cladophorales (Chlorophyta) from the remote coral reefs of the Southern Line Islands, Pacific Ocean. | Frederik Leliaert, Emily L A Kelly, Jan Janouškovec, Michael D Fox, Maggie D Johnson, Farran M Redfern, Taati Eria, Andreas F Haas, Enric Sala, Stuart A Sandin, Jennifer E Smith | Journal Of Phycology | 2021-12-12 | Abstract | |
| From microbial community structure to metabolic inference using paprica. | Natalia G Erazo, Avishek Dutta, Jeff S Bowman | STAR Protocols | 2021-12-11 | Abstract | |
| Microbial co-occurrence complicates associations of gut microbiome with US immigration, dietary intake and obesity. | Zheng Wang, Mykhaylo Usyk, Yoshiki Vázquez-Baeza, Guo-Chong Chen, Carmen R Isasi, Jessica S Williams-Nguyen, Simin Hua, Daniel McDonald, Bharat Thyagarajan, Martha L Daviglus, Jianwen Cai, Kari E North, Tao Wang, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi | Genome Biology | 2021-12-10 | Abstract | |
| Bicarbonate modulates delafloxacin activity against MDR Staphylococcus aureus and Pseudomonas aeruginosa. | Mische Holland, Elisabet Bjanes, Victor Nizet, Nicholas Dillon | The Journal Of Antimicrobial Chemotherapy | 2021-12-10 | Abstract | |
| Prior Methamphetamine Use Disorder History Does Not Impair Interoceptive Processing of Soft Touch in HIV Infection. | Amanda Bischoff-Grethe, Ronald J Ellis, Susan F Tapert, Martin P Paulus, Igor Grant, Translational Methamphetamine Aids Research Center Tmarc | Viruses | 2021-12-10 | Abstract | |
| CRIg on liver macrophages clears pathobionts and protects against alcoholic liver disease. | Yi Duan, Huikuan Chu, Katharina Brandl, Lu Jiang, Suling Zeng, Nairika Meshgin, Eleni Papachristoforou, Josepmaria Argemi, Beatriz G Mendes, Yanhan Wang, Hua Su, Weizhong Sun, Cristina Llorente, Tim Hendrikx, Xiao Liu, Mojgan Hosseini, Tatiana Kisseleva, David A Brenner, Ramon Bataller, Prakash Ramachandran, Michael Karin, Wenxian Fu, Bernd Schnabl | Nature Communications | 2021-12-09 | Abstract | |
| The fecal mycobiome in non-alcoholic fatty liver disease. | Münevver Demir, Sonja Lang, Phillipp Hartmann, Yi Duan, Anna Martin, Yukiko Miyamoto, Marina Bondareva, Xinlian Zhang, Yanhan Wang, Philipp Kasper, Corinna Bang, Christoph Roderburg, Frank Tacke, Hans-Michael Steffen, Tobias Goeser, Andrey Kruglov, Lars Eckmann, Peter Stärkel, Derrick E Fouts, Bernd Schnabl | Journal Of Hepatology | 2021-12-09 | Abstract | |
| Defining and quantifying the core microbiome: Challenges and prospects. | Alexander T Neu, Eric E Allen, Kaustuv Roy | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-12-04 | Abstract | |
| Clean room microbiome complexity impacts planetary protection bioburden. | Ryan Hendrickson, Camilla Urbaniak, Jeremiah J Minich, Heidi S Aronson, Cameron Martino, Ramunas Stepanauskas, Rob Knight, Kasthuri Venkateswaran | Microbiome | 2021-12-04 | Abstract | |
| Seriniquinones as Therapeutic Leads for Treatment of BRAF and NRAS Mutant Melanomas. | Amanda S Hirata, Paula Rezende-Teixeira, João Agostinho Machado-Neto, Paula C Jimenez, James J La Clair, William Fenical, Leticia V Costa-Lotufo | Molecules (Basel, Switzerland) | 2021-12-04 | Abstract | |
| GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. | Daniel Petras, Vanessa V Phelan, Deepa Acharya, Andrew E Allen, Allegra T Aron, Nuno Bandeira, Benjamin P Bowen, Deirdre Belle-Oudry, Simon Boecker, Dale A Cummings, Jessica M Deutsch, Eoin Fahy, Neha Garg, Rachel Gregor, Jo Handelsman, Mirtha Navarro-Hoyos, Alan K Jarmusch, Scott A Jarmusch, Katherine Louie, Katherine N Maloney, Michael T Marty, Michael M Meijler, Itzhak Mizrahi, Rachel L Neve, Trent R Northen, Carlos Molina-Santiago, Morgan Panitchpakdi, Benjamin Pullman, Aaron W Puri, Robin Schmid, Shankar Subramaniam, Monica Thukral, Felipe Vasquez-Castro, Pieter C Dorrestein, Mingxun Wang | Nature Methods | 2021-12-03 | Abstract | |
| A particulate saponin/TLR agonist vaccine adjuvant alters lymph flow and modulates adaptive immunity. | Murillo Silva, Yu Kato, Mariane B Melo, Ivy Phung, Brian L Freeman, Zhongming Li, Kangsan Roh, Jan W Van Wijnbergen, Hannah Watkins, Chiamaka A Enemuo, Brittany L Hartwell, Jason Y H Chang, Shuhao Xiao, Kristen A Rodrigues, Kimberly M Cirelli, Na Li, Sonya Haupt, Aereas Aung, Benjamin Cossette, Wuhbet Abraham, Swati Kataria, Raiza Bastidas, Jinal Bhiman, Caitlyn Linde, Nathaniel I Bloom, Bettina Groschel, Erik Georgeson, Nicole Phelps, Ayush Thomas, Julia Bals, Diane G Carnathan, Daniel Lingwood, Dennis R Burton, Galit Alter, Timothy P Padera, Angela M Belcher, William R Schief, Guido Silvestri, Ruth M Ruprecht, Shane Crotty, Darrell J Irvine | Science Immunology | 2021-12-03 | Abstract | |
| Gut microbiota-driven brain Aβ amyloidosis in mice requires microglia. | Hemraj B Dodiya, Holly L Lutz, Ian Q Weigle, Priyam Patel, Julia Michalkiewicz, Carlos J Roman-Santiago, Can Martin Zhang, Yingxia Liang, Abhinav Srinath, Xulun Zhang, Jessica Xia, Monica Olszewski, Xiaoqiong Zhang, Matthew John Schipma, Eugene B Chang, Rudolph E Tanzi, Jack A Gilbert, Sangram S Sisodia | The Journal Of Experimental Medicine | 2021-12-02 | Abstract | |
| Siderophore-mediated zinc acquisition enhances enterobacterial colonization of the inflamed gut. | Judith Behnsen, Hui Zhi, Allegra T Aron, Vivekanandan Subramanian, William Santus, Michael H Lee, Romana R Gerner, Daniel Petras, Janet Z Liu, Keith D Green, Sarah L Price, Jose Camacho, Hannah Hillman, Joshua Tjokrosurjo, Nicola P Montaldo, Evelyn M Hoover, Sean Treacy-Abarca, Benjamin A Gilston, Eric P Skaar, Walter J Chazin, Sylvie Garneau-Tsodikova, Matthew B Lawrenz, Robert D Perry, Sean-Paul Nuccio, Pieter C Dorrestein, Manuela Raffatellu | Nature Communications | 2021-12-01 | Abstract | |
| The Fecal Microbiome and Metabolome of Pitt Hopkins Syndrome, a Severe Autism Spectrum Disorder. | Amanda H Dilmore, Daniel McDonald, Tanya T Nguyen, James B Adams, Rosa Krajmalnik-Brown, Emmanuel Elijah, Pieter C Dorrestein, Rob Knight | MSystems | 2021-11-30 | Abstract | |
| A combined EM and proteomic analysis places HIV-1 Vpu at the crossroads of retromer and ESCRT complexes: PTPN23 is a Vpu-cofactor. | Charlotte A Stoneham, Simon Langer, Paul D De Jesus, Jacob M Wozniak, John Lapek, Thomas Deerinck, Andrea Thor, Lars Pache, Sumit K Chanda, David J Gonzalez, Mark Ellisman, John Guatelli | PLoS Pathogens | 2021-11-29 | Abstract | |
| Differential Fecal Microbiome Dysbiosis after Equivalent Traumatic Brain Injury in Aged Versus Young Adult Mice. | Booker T Davis, Mecca B A R Islam, Promi Das, Jack A Gilbert, Karen J Ho, Steven J Schwulst | Journal Of Experimental Neurology | 2021-11-26 | Abstract | |
| Redrawing therapeutic boundaries: microbiota and cancer. | Jonathan Sholl, Gregory D Sepich-Poore, Rob Knight, Thomas Pradeu | Trends In Cancer | 2021-11-26 | Abstract | |
| Host Factors in Dysregulation of the Gut Barrier Function during Alcohol-Associated Liver Disease. | Luca Maccioni, Isabelle A Leclercq, Bernd Schnabl, Peter Stärkel | International Journal Of Molecular Sciences | 2021-11-24 | Abstract | |
| Vertical Inheritance Facilitates Interspecies Diversification in Biosynthetic Gene Clusters and Specialized Metabolites. | Alexander B Chase, Douglas Sweeney, Mitchell N Muskat, Dulce G Guillén-Matus, Paul R Jensen | MBio | 2021-11-23 | Abstract | |
| Comparison of fecal and oral collection methods for studies of the human microbiota in two Iranian cohorts. | Zeni Wu, Autumn G Hullings, Reza Ghanbari, Arash Etemadi, Yunhu Wan, Bin Zhu, Hossein Poustchi, Behnam Bagheri Fahraji, Mohammad Javad Zare Sakhvidi, Jianxin Shi, Rob Knight, Reza Malekzadeh, Rashmi Sinha, Emily Vogtmann | BMC Microbiology | 2021-11-22 | Abstract | |
| Native mass spectrometry-based metabolomics identifies metal-binding compounds. | Allegra T Aron, Daniel Petras, Robin Schmid, Julia M Gauglitz, Isabell Büttel, Luis Antelo, Hui Zhi, Sean-Paul Nuccio, Christina C Saak, Kien P Malarney, Eckhard Thines, Rachel J Dutton, Lihini I Aluwihare, Manuela Raffatellu, Pieter C Dorrestein | Nature Chemistry | 2021-11-18 | Abstract | |
| Severe delayed hypersensitivity reactions to IL-1 and IL-6 inhibitors link to common HLA-DRB1*15 alleles. | Vivian E Saper, Michael J Ombrello, Adriana H Tremoulet, Gonzalo Montero-Martin, Sampath Prahalad, Scott Canna, Chisato Shimizu, Gail Deutsch, Serena Y Tan, Elaine F Remmers, Dimitri Monos, Timothy Hahn, Omkar K Phadke, Elaine Cassidy, Ian Ferguson, Vamsee Mallajosyula, Jianpeng Xu, Jaime S Rosa Duque, Gilbert T Chua, Debopam Ghosh, Ann Marie Szymanski, Danielle Rubin, Jane C Burns, Lu Tian, Marcelo A Fernandez-Vina, Elizabeth D Mellins, Jill A Hollenbach, , | Annals Of The Rheumatic Diseases | 2021-11-17 | Abstract | |
| Reporting guidelines for human microbiome research: the STORMS checklist. | Chloe Mirzayi, Audrey Renson, , , Fatima Zohra, Shaimaa Elsafoury, Ludwig Geistlinger, Lora J Kasselman, Kelly Eckenrode, Janneke van de Wijgert, Amy Loughman, Francine Z Marques, David A MacIntyre, Manimozhiyan Arumugam, Rimsha Azhar, Francesco Beghini, Kirk Bergstrom, Ami Bhatt, Jordan E Bisanz, Jonathan Braun, Hector Corrada Bravo, Gregory A Buck, Frederic Bushman, David Casero, Gerard Clarke, Maria Carmen Collado, Paul D Cotter, John F Cryan, Ryan T Demmer, Suzanne Devkota, Eran Elinav, Juan S Escobar, Jennifer Fettweis, Robert D Finn, Anthony A Fodor, Sofia Forslund, Andre Franke, Cesare Furlanello, Jack Gilbert, Elizabeth Grice, Benjamin Haibe-Kains, Scott Handley, Pamela Herd, Susan Holmes, Jonathan P Jacobs, Lisa Karstens, Rob Knight, Dan Knights, Omry Koren, Douglas S Kwon, Morgan Langille, Brianna Lindsay, Dermot McGovern, Alice C McHardy, Shannon McWeeney, Noel T Mueller, Luigi Nezi, Matthew Olm, Noah Palm, Edoardo Pasolli, Jeroen Raes, Matthew R Redinbo, Malte Rühlemann, R Balfour Sartor, Patrick D Schloss, Lynn Schriml, Eran Segal, Michelle Shardell, Thomas Sharpton, Ekaterina Smirnova, Harry Sokol, Justin L Sonnenburg, Sujatha Srinivasan, Louise B Thingholm, Peter J Turnbaugh, Vaibhav Upadhyay, Ramona L Walls, Paul Wilmes, Takuji Yamada, Georg Zeller, Mingyu Zhang, Ni Zhao, Liping Zhao, Wenjun Bao, Aedin Culhane, Viswanath Devanarayan, Joaquin Dopazo, Xiaohui Fan, Matthias Fischer, Wendell Jones, Rebecca Kusko, Christopher E Mason, Tim R Mercer, Susanna-Assunta Sansone, Andreas Scherer, Leming Shi, Shraddha Thakkar, Weida Tong, Russ Wolfinger, Christopher Hunter, Nicola Segata, Curtis Huttenhower, Jennifer B Dowd, Heidi E Jones, Levi Waldron | Nature Medicine | 2021-11-17 | Abstract | |
| Gut microbiome in Parkinson's disease: New insights from meta-analysis. | Tzi Shin Toh, Chun Wie Chong, Shen-Yang Lim, Jeff Bowman, Mihai Cirstea, Chin-Hsien Lin, Chieh-Chang Chen, Silke Appel-Cresswell, B Brett Finlay, Ai Huey Tan | Parkinsonism & Related Disorders | 2021-11-17 | Abstract | |
| Bacteriophages and their potential for treatment of gastrointestinal diseases. | Yi Duan, Ry Young, Bernd Schnabl | Nature Reviews. Gastroenterology & Hepatology | 2021-11-15 | Abstract | |
| High-resolution in situ analysis of Cas9 germline transcript distributions in gene-drive Anopheles mosquitoes. | Gerard Terradas, Anita Hermann, Anthony A James, William McGinnis, Ethan Bier | G3 (Bethesda, Md.) | 2021-11-15 | Abstract | |
| The Human-Milk Oligosaccharide Profile of Lactating Women in Dhaka, Bangladesh. | Lisa G Pell, Eric O Ohuma, Chloe Yonemitsu, Miranda G Loutet, Tahmeed Ahmed, Abdullah Al Mahmud, Meghan B Azad, Lars Bode, Daniel E Roth | Current Developments In Nutrition | 2021-11-13 | Abstract | |
| Microbial-Driven Immunological Memory and Its Potential Role in Microbiome Editing for the Prevention of Colorectal Cancer. | Laure Campillo-Gimenez, David Rios-Covian, Jesus Rivera-Nieves, Hiroshi Kiyono, Hiutung Chu, Peter B Ernst | Frontiers In Cellular And Infection Microbiology | 2021-11-12 | Abstract | |
| Escherichia coli Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational Data | Patrick V Phaneuf, Daniel C Zielinski, James T Yurkovich, Josefin Johnsen, Richard Szubin, Lei Yang, Se Hyeuk Kim, Sebastian Schulz, Muyao Wu, Christopher Dalldorf, Emre Ozdemir, Rebecca M Lennen, Bernhard O Palsson, Adam M Feist | ACS Synthetic Biology | 2021-11-11 | Abstract | |
| Spectrum of Viral Pathogens Identified in Children with Clinical Myocarditis (Pre-COVID, 2000-2018): Etiologic Agent vs Innocent Bystander. | Othman A Aljohani, Duncan Mackie, Andras Bratincsak, John Bradley, James C Perry | The Journal Of Pediatrics | 2021-11-10 | Abstract | |
| Integrative Analysis of Metabolome and Microbiome in Patients with Progressive Alcohol-Associated Liver Disease. | Bei Gao, Yixin Zhu, Nan Gao, Weishou Shen, Peter Stärkel, Bernd Schnabl | Metabolites | 2021-11-10 | Abstract | |
| Identification of a therapeutic interfering particle-A single-dose SARS-CoV-2 antiviral intervention with a high barrier to resistance. | Sonali Chaturvedi, Gustavo Vasen, Michael Pablo, Xinyue Chen, Nathan Beutler, Arjun Kumar, Elizabeth Tanner, Sylvia Illouz, Donna Rahgoshay, John Burnett, Leo Holguin, Pei-Yi Chen, Blaise Ndjamen, Melanie Ott, Robert Rodick, Thomas Rogers, Davey M Smith, Leor S Weinberger | Cell | 2021-11-10 | Abstract | |
| Re-classification of strains and mining secondary metabolite biosynthetic gene clusters. | Namil Lee, Mira Choi, Woori Kim, Soonkyu Hwang, Yongjae Lee, Ji Hun Kim, Gahyeon Kim, Hyeseong Kim, Suhyung Cho, Sun Chang Kim, Bernhard Palsson, Kyoung-Soon Jang, Byung-Kwan Cho | IScience | 2021-11-09 | Abstract | |
| The Gut Microbiome Modifies the Association between a Mediterranean Diet and Diabetes in US Hispanic / Latino Population. | Dong D Wang, Qibin Qi, Zheng Wang, Mykhaylo Usyk, Daniela Sotres-Alvarez, Josiemer Mattei, Martha Tamez, Marc D Gellman, Martha Daviglus, Frank B Hu, Meir J Stampfer, Curtis Huttenhower, Rob Knight, Robert D Burk, Robert C Kaplan | The Journal Of Clinical Endocrinology And Metabolism | 2021-11-08 | Abstract | |
| Multi-Omics Study of Keystone Species in a Cystic Fibrosis Microbiome. | Cynthia B Silveira, Ana G Cobián-Güemes, Carla Uranga, Jonathon L Baker, Anna Edlund, Forest Rohwer, Douglas Conrad | International Journal Of Molecular Sciences | 2021-11-07 | Abstract | |
| Genome mining methods to discover bioactive natural products. | Katherine D Bauman, Keelie S Butler, Bradley S Moore, Jonathan R Chekan | Natural Product Reports | 2021-11-04 | Abstract | |
| Potent Anti-SARS-CoV-2 Activity by the Natural Product Gallinamide A and Analogues via Inhibition of Cathepsin L. | Anneliese S Ashhurst, Arthur H Tang, Pavla Fajtová, Michael C Yoon, Anupriya Aggarwal, Max J Bedding, Alexander Stoye, Laura Beretta, Dustin Pwee, Aleksandra Drelich, Danielle Skinner, Linfeng Li, Thomas D Meek, James H McKerrow, Vivian Hook, Chien-Te Tseng, Mark Larance, Stuart Turville, William H Gerwick, Anthony J O'Donoghue, Richard J Payne | Journal Of Medicinal Chemistry | 2021-11-03 | Abstract | |
| Role of the Gut Microbiota in Parenteral Nutrition-associated Liver Disease: From Current Knowledge to Future Opportunities. | Lu Jiang, Ying Wang, Yongtao Xiao, Yong Wang, Junkai Yan, Bernd Schnabl, Wei Cai | The Journal Of Nutrition | 2021-11-03 | Abstract | |
| Analysis of SARS-CoV-2 RNA Persistence across Indoor Surface Materials Reveals Best Practices for Environmental Monitoring Programs. | Rodolfo A Salido, Victor J Cantú, Alex E Clark, Sandra L Leibel, Anahid Foroughishafiei, Anushka Saha, Abbas Hakim, Alhakam Nouri, Alma L Lastrella, Anelizze Castro-Martínez, Ashley Plascencia, Bhavika K Kapadia, Bing Xia, Christopher A Ruiz, Clarisse A Marotz, Daniel Maunder, Elijah S Lawrence, Elizabeth W Smoot, Emily Eisner, Evelyn S Crescini, Laura Kohn, Lizbeth Franco Vargas, Marisol Chacón, Maryann Betty, Michal Machnicki, Min Yi Wu, Nathan A Baer, Pedro Belda-Ferre, Peter De Hoff, Phoebe Seaver, R Tyler Ostrander, Rebecca Tsai, Shashank Sathe, Stefan Aigner, Sydney C Morgan, Toan T Ngo, Tom Barber, Willi Cheung, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Rebecca Fielding-Miller, Rob Knight | MSystems | 2021-11-02 | Abstract | |
| Putting microbial interactions back into community contexts. | Emily C Pierce, Rachel J Dutton | Current Opinion In Microbiology | 2021-11-02 | Abstract | |
| The interaction of enteric bacterial effectors with the host engulfment pathway control innate immune responses. | Ibrahim M Sayed, Stella-Rita Ibeawuchi, Dominique Lie, Mahitha Shree Anandachar, Rama Pranadinata, Manuela Raffatellu, Soumita Das | Gut Microbes | 2021-11-01 | Abstract | |
| Development of a Rapid and Sensitive CasRx-Based Diagnostic Assay for SARS-CoV-2. | Daniel J Brogan, Duverney Chaverra-Rodriguez, Calvin P Lin, Andrea L Smidler, Ting Yang, Lenissa M Alcantara, Igor Antoshechkin, Junru Liu, Robyn R Raban, Pedro Belda-Ferre, Rob Knight, Elizabeth A Komives, Omar S Akbari | ACS Sensors | 2021-10-29 | Abstract | |
| Fecal Microbiome Composition Does Not Predict Diet-Induced TMAO Production in Healthy Adults. | Marc Ferrell, Peter Bazeley, Zeneng Wang, Bruce S Levison, Xinmin S Li, Xun Jia, Ronald M Krauss, Rob Knight, Aldons J Lusis, J C Garcia-Garcia, Stanley L Hazen, W H Wilson Tang | Journal Of The American Heart Association | 2021-10-29 | Abstract | |
| Facultative Parthenogenesis in California Condors. | Oliver A Ryder, Steven Thomas, Jessica Martin Judson, Michael N Romanov, Sugandha Dandekar, Jeanette C Papp, Lindsay C Sidak-Loftis, Kelli Walker, Ilse H Stalis, Michael Mace, Cynthia C Steiner, Leona G Chemnick | The Journal Of Heredity | 2021-10-28 | Abstract | |
| Asymptomatic detection of SARS-CoV-2 among cancer patients receiving infusional anti-cancer therapy. | Justin Shaya, Angelo Cabal, Taylor Nonato, Francesca Torriani, Joseph Califano, Scott Lippman, Assuntina Sacco, Rana R McKay | Cancer Medicine | 2021-10-28 | Abstract | |
| Biosynthesis and antifungal activity of fungus-induced O-methylated flavonoids in maize. | Christiane Förster, Vinzenz Handrick, Yezhang Ding, Yoko Nakamura, Christian Paetz, Bernd Schneider, Gabriel Castro-Falcón, Chambers C Hughes, Katrin Luck, Sowmya Poosapati, Grit Kunert, Alisa Huffaker, Jonathan Gershenzon, Eric A Schmelz, Tobias G Köllner | Plant Physiology | 2021-10-27 | Abstract | |
| Drugs and Bugs: The Gut-Brain Axis and Substance Use Disorders. | Sierra Simpson, Rio Mclellan, Emma Wellmeyer, Frederic Matalon, Olivier George | Journal Of Neuroimmune Pharmacology : The Official Journal Of The Society On NeuroImmune Pharmacology | 2021-10-25 | Abstract | |
| Editorial: Host-Pathogen Interactions During Pneumococcal Infection. | Masaya Yamaguchi, Yuki Kinjo, Victor Nizet | Frontiers In Cellular And Infection Microbiology | 2021-10-25 | Abstract | |
| Population Pharmacokinetic Modeling and Probability of Pharmacodynamic Target Attainment for Ceftazidime-Avibactam in Pediatric Patients Aged 3 Months and Older. | Richard C Franzese, Lynn McFadyen, Kenny J Watson, Todd Riccobene, Timothy J Carrothers, Manoli Vourvahis, Phylinda L S Chan, Susan Raber, John S Bradley, Mark Lovern | Clinical Pharmacology And Therapeutics | 2021-10-23 | Abstract | |
| Hepatocellular Carcinoma Risk Assessment for Patients With Advanced Fibrosis After Eradication of Hepatitis C Virus. | Nobuharu Tamaki, Masayuki Kurosaki, Yutaka Yasui, Nami Mori, Keiji Tsuji, Chitomi Hasebe, Kouji Joko, Takehiro Akahane, Koichiro Furuta, Haruhiko Kobashi, Hiroyuki Kimura, Hitoshi Yagisawa, Hiroyuki Marusawa, Masahiko Kondo, Yuji Kojima, Hideo Yoshida, Yasushi Uchida, Toshifumi Tada, Shinichiro Nakamura, Satoshi Yasuda, Hidenori Toyoda, Rohit Loomba, Namiki Izumi | Hepatology Communications | 2021-10-22 | Abstract | |
| Mucin-mimetic glycan arrays integrating machine learning for analyzing receptor pattern recognition by influenza A viruses. | Taryn M Lucas, Chitrak Gupta, Meghan O Altman, Emi Sanchez, Matthew R Naticchia, Pascal Gagneux, Abhishek Singharoy, Kamil Godula | Chem | 2021-10-22 | Abstract | |
| Specialized Metabolite Mediated Predation Defense in the Marine Actinobacterium Salinispora | Robert N Tuttle, Greg W Rouse, Gabriel Castro-Falcón, Chambers C Hughes, Paul R Jensen | Applied And Environmental Microbiology | 2021-10-20 | Abstract | |
| Antimicrobials from a feline commensal bacterium inhibit skin infection by drug-resistant S. pseudintermedius | Alan M O'Neill, Kate A Worthing, Nikhil Kulkarni, Fengwu Li, Teruaki Nakatsuji, Dominic McGrosso, Robert H Mills, Gayathri Kalla, Joyce Y Cheng, Jacqueline M Norris, Kit Pogliano, Joe Pogliano, David J Gonzalez, Richard L Gallo | ELife | 2021-10-19 | Abstract | |
| The S Protein of Group B Is a Critical Virulence Determinant That Impacts the Cell Surface Virulome. | Anaamika Campeau, Satoshi Uchiyama, Concepcion Sanchez, Consuelo Sauceda, Victor Nizet, David J Gonzalez | Frontiers In Microbiology | 2021-10-14 | Abstract | |
| Immune Response in Severe and Non-Severe Coronavirus Disease 2019 (COVID-19) Infection: A Mechanistic Landscape. | Kavitha Mukund, Priya Nayak, Chethan Ashokkumar, Sohail Rao, Jose Almeda, Monica M Betancourt-Garcia, Rakesh Sindhi, Shankar Subramaniam | Frontiers In Immunology | 2021-10-13 | Abstract | |
| Microbial diversity in tropical marine sediments assessed using culture-dependent and culture-independent techniques. | Alyssa M Demko, Nastassia V Patin, Paul R Jensen | Environmental Microbiology | 2021-10-11 | Abstract | |
| Traditional Farming Lifestyle in Old Older Mennonites Modulates Human Milk Composition. | Antti E Seppo, Rakin Choudhury, Catherine Pizzarello, Rohith Palli, Sade Fridy, Puja Sood Rajani, Jessica Stern, Camille Martina, Chloe Yonemitsu, Lars Bode, Kevin Bu, Sabrina Tamburini, Enrica Piras, David S Wallach, Maria Allen, R John Looney, Jose C Clemente, Juilee Thakar, Kirsi M Järvinen | Frontiers In Immunology | 2021-10-11 | Abstract | |
| Reconstitution of an intact clock reveals mechanisms of circadian timekeeping. | Archana G Chavan, Jeffrey A Swan, Joel Heisler, Cigdem Sancar, Dustin C Ernst, Mingxu Fang, Joseph G Palacios, Rebecca K Spangler, Clive R Bagshaw, Sarvind Tripathi, Priya Crosby, Susan S Golden, Carrie L Partch, Andy LiWang | Science (New York, N.Y.) | 2021-10-08 | Abstract | |
| SARS-CoV-2 infection generates tissue-localized immunological memory in humans. | Maya M L Poon, Ksenia Rybkina, Yu Kato, Masaru Kubota, Rei Matsumoto, Nathaniel I Bloom, Zeli Zhang, Kathryn M Hastie, Alba Grifoni, Daniela Weiskopf, Steven B Wells, Basak B Ural, Nora Lam, Peter A Szabo, Pranay Dogra, Yoon S Lee, Joshua I Gray, Marissa C Bradley, Maigan A Brusko, Todd M Brusko, Erica O Saphire, Thomas J Connors, Alessandro Sette, Shane Crotty, Donna L Farber | Science Immunology | 2021-10-07 | Abstract | |
| A posteriori dietary patterns better explain variations of the gut microbiome than individual markers in the American Gut Project. | Aurélie Cotillard, Agnès Cartier-Meheust, Nicole S Litwin, Soline Chaumont, Mathilde Saccareau, Franck Lejzerowicz, Julien Tap, Hana Koutnikova, Diana Gutierrez Lopez, Daniel McDonald, Se Jin Song, Rob Knight, Muriel Derrien, Patrick Veiga | The American Journal Of Clinical Nutrition | 2021-10-07 | Abstract | |
| Vitamin B-12 and the Gastrointestinal Microbiome: A Systematic Review. | Heather M Guetterman, Samantha L Huey, Rob Knight, Allison M Fox, Saurabh Mehta, Julia L Finkelstein | Advances In Nutrition (Bethesda, Md.) | 2021-10-06 | Abstract | |
| Uniform Manifold Approximation and Projection (UMAP) Reveals Composite Patterns and Resolves Visualization Artifacts in Microbiome Data. | George Armstrong, Cameron Martino, Gibraan Rahman, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Gal Mishne, Rob Knight | MSystems | 2021-10-05 | Abstract | |
| Spatial metabolomics identifies localized chemical changes in heart tissue during chronic cardiac Chagas Disease. | Danya A Dean, Gautham Gautham, Jair L Siqueira-Neto, James H McKerrow, Pieter C Dorrestein, Laura-Isobel McCall | PLoS Neglected Tropical Diseases | 2021-10-04 | Abstract | |
| Update on the Role of the Gut Microbiota on Alcohol-Associated Liver Disease. | Bernd Schnabl | Gastroenterology & Hepatology | 2021-10-04 | Abstract | |
| Unique virulence role of post-translocational chaperone PrsA in shaping secretome. | Zhao-Yi Wu, Anaamika Campeau, Chao-Hsien Liu, David J Gonzalez, Masaya Yamaguchi, Shigetada Kawabata, Chieh-Hsien Lu, Chian-Yu Lai, Hao-Chieh Chiu, Yung-Chi Chang | Virulence | 2021-10-01 | Abstract | |
| Iron-regulatory genes are associated with Neuroimaging measures in HIV infection. | Christine Fennema-Notestine, Tricia A Thornton-Wells, Todd Hulgan, Scott Letendre, Ronald J Ellis, Donald R Franklin, Albert M Anderson, Robert K Heaton, Cinnamon S Bloss, Igor Grant, Asha R Kallianpur, | Brain Imaging And Behavior | 2021-10-01 | Abstract | |
| Dietary Neu5Ac Intervention Protects Against Atherosclerosis Associated With Human-Like Neu5Gc Loss. | Kunio Kawanishi, Joanna K Coker, Kaare V Grunddal, Chirag Dhar, Jason Hsiao, Karsten Zengler, Nissi Varki, Ajit Varki, Philip L S M Gordts | Arteriosclerosis, Thrombosis, And Vascular Biology | 2021-09-30 | Abstract | |
| Bacterial Membrane-Derived Vesicles Attenuate Vancomycin Activity against Methicillin-Resistant . | Monika Kumaraswamy, Kamilla Wiull, Bishnu Joshi, George Sakoulas, Armin Kousha, Gustav Vaaje-Kolstad, Mona Johannessen, Kristin Hegstad, Victor Nizet, Fatemeh Askarian | Microorganisms | 2021-09-29 | Abstract | |
| Microbial Ecology and Evolution Are Essential for Understanding Pandemics. | Megan E Frederickson, Aspen T Reese | MBio | 2021-09-28 | Abstract | |
| Determinants of SARS-CoV-2 entry and replication in airway mucosal tissue and susceptibility in smokers. | Tsuguhisa Nakayama, Ivan T Lee, Sizun Jiang, Matthias S Matter, Carol H Yan, Jonathan B Overdevest, Chien-Ting Wu, Yury Goltsev, Liang-Chun Shih, Chun-Kang Liao, Bokai Zhu, Yunhao Bai, Peter Lidsky, Yinghong Xiao, David Zarabanda, Angela Yang, Meena Easwaran, Christian M Schürch, Pauline Chu, Han Chen, Anna K Stalder, David R McIlwain, Nicole A Borchard, Phil A Gall, Sachi S Dholakia, Wei Le, Le Xu, Chih-Jaan Tai, Te-Huei Yeh, Elizabeth Erickson-Direnzo, Jason M Duran, Kirsten D Mertz, Peter H Hwang, Jasmin D Haslbauer, Peter K Jackson, Thomas Menter, Raul Andino, Peter D Canoll, Adam S DeConde, Zara M Patel, Alexandar Tzankov, Garry P Nolan, Jayakar V Nayak | Cell Reports. Medicine | 2021-09-28 | Abstract | |
| Detection and quantification of Mycobacterium tuberculosis antigen CFP10 in serum and urine for the rapid diagnosis of active tuberculosis disease. | Marva Seifert, Eva Vargas, Victor Ruiz-Valdepeñas Montiel, Joseph Wang, Timothy C Rodwell, Antonino Catanzaro | Scientific Reports | 2021-09-28 | Abstract | |
| Discovery and Mechanism of SARS-CoV-2 Main Protease Inhibitors. | Sarah Huff, Indrasena Reddy Kummetha, Shashi Kant Tiwari, Matthew B Huante, Alex E Clark, Shaobo Wang, William Bray, Davey Smith, Aaron F Carlin, Mark Endsley, Tariq M Rana | Journal Of Medicinal Chemistry | 2021-09-27 | Abstract | |
| SARS-CoV-2 Variants of Concern. | Jun Yong Choi, Davey M Smith | Yonsei Medical Journal | 2021-09-27 | Abstract | |
| RiboRid: A low cost, advanced, and ultra-efficient method to remove ribosomal RNA for bacterial transcriptomics. | Donghui Choe, Richard Szubin, Saugat Poudel, Anand Sastry, Yoseb Song, Yongjae Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | PLoS Genetics | 2021-09-27 | Abstract | |
| Gut epithelial IL-27 confers intestinal immunity through the induction of intraepithelial lymphocytes. | Chia-Hao Lin, Mei-Chi Chen, Ling-Li Lin, David A Christian, Booki Min, Christopher A Hunter, Li-Fan Lu | The Journal Of Experimental Medicine | 2021-09-23 | Abstract | |
| Restriction factor compendium for influenza A virus reveals a mechanism for evasion of autophagy. | Laura Martin-Sancho, Shashank Tripathi, Ariel Rodriguez-Frandsen, Lars Pache, Maite Sanchez-Aparicio, Michael J McGregor, Kelsey M Haas, Danielle L Swaney, Thong T Nguyen, João I Mamede, Christopher Churas, Dexter Pratt, Sara B Rosenthal, Laura Riva, Courtney Nguyen, Nish Beltran-Raygoza, Stephen Soonthornvacharin, Guojun Wang, David Jimenez-Morales, Paul D De Jesus, Hong M Moulton, David A Stein, Max W Chang, Chris Benner, Trey Ideker, Randy A Albrecht, Judd F Hultquist, Nevan J Krogan, Adolfo García-Sastre, Sumit K Chanda | Nature Microbiology | 2021-09-23 | Abstract | |
| Mass spectrometry-based metabolomics in microbiome investigations. | Anelize Bauermeister, Helena Mannochio-Russo, Letícia V Costa-Lotufo, Alan K Jarmusch, Pieter C Dorrestein | Nature Reviews. Microbiology | 2021-09-22 | Abstract | |
| Challenges in Determining the Role of Microbiome Evolution in Barrett's Esophagus and Progression to Esophageal Adenocarcinoma. | Caitlin Guccione, Rena Yadlapati, Shailja Shah, Rob Knight, Kit Curtius | Microorganisms | 2021-09-22 | Abstract | |
| Markers of Gut Barrier Function and Microbial Translocation Associate with Lower Gut Microbial Diversity in People with HIV. | Ronald J Ellis, Jennifer E Iudicello, Robert K Heaton, Stéphane Isnard, John Lin, Jean-Pierre Routy, Sara Gianella, Martin Hoenigl, Rob Knight | Viruses | 2021-09-22 | Abstract | |
| Detection of sulfate-reducing bacteria as an indicator for successful mitigation of sulfide production. | Avishek Dutta, Fernando Valle, Thomas Goldman, Jeff Keating, Ellen Burke, Nicole Williamson, Reinhard Dirmeier, Jeff S Bowman | Applied And Environmental Microbiology | 2021-09-22 | Abstract | |
| Continental-Scale Paddy Soil Bacterial Community Structure, Function, and Biotic Interaction. | Hong-Yi Li, Hang Wang, Xin-Hua Tao, Xian-Zhe Wang, Wei-Zheng Jin, Jack A Gilbert, Yong-Guan Zhu, Zhi-Jian Zhang | MSystems | 2021-09-21 | Abstract | |
| Cell-intrinsic and -extrinsic roles of miRNAs in regulating T cell immunity. | Sunglim Cho, Jiayi Dong, Li-Fan Lu | Immunological Reviews | 2021-09-21 | Abstract | |
| Immunobiology of the Classical Lancefield Group A Streptococcal Carbohydrate Antigen. | Nina J Gao, Ervin Rodas Lima, Victor Nizet | Infection And Immunity | 2021-09-20 | Abstract | |
| Streptolysins are the primary inflammasome activators in macrophages during Streptococcus pyogenes infection. | Johanna Richter, Mercedes M Monteleone, Amanda J Cork, Timothy C Barnett, Victor Nizet, Stephan Brouwer, Kate Schroder, Mark J Walker | Immunology And Cell Biology | 2021-09-18 | Abstract | |
| Genetic dissection of complex traits using hierarchical biological knowledge. | Hidenori Tanaka, Jason F Kreisberg, Trey Ideker | PLoS Computational Biology | 2021-09-17 | Abstract | |
| Chemical Proportionality within Molecular Networks. | Daniel Petras, Andrés Mauricio Caraballo-Rodríguez, Alan K Jarmusch, Carlos Molina-Santiago, Julia M Gauglitz, Emily C Gentry, Pedro Belda-Ferre, Diego Romero, Shirley M Tsunoda, Pieter C Dorrestein, Mingxun Wang | Analytical Chemistry | 2021-09-17 | Abstract | |
| Tender and swollen joint counts are poorly associated with disability in chikungunya arthritis compared to rheumatoid arthritis. | Hugh Watson, Ramão Luciano Nogueira-Hayd, Maony Rodrigues-Moreno, Felipe Naveca, Giulia Calusi, Karol Suchowiecki, Gary S Firestein, Gary Simon, Aileen Y Chang | Scientific Reports | 2021-09-17 | Abstract | |
| Mechanisms for control of skin immune function by the microbiome. | Teruaki Nakatsuji, Joyce Y Cheng, Richard L Gallo | Current Opinion In Immunology | 2021-09-16 | Abstract | |
| Gut Metabolites Are More Predictive of Disease and Cohoused States than Gut Bacterial Features in a Polycystic Ovary Syndrome-Like Mouse Model. | Bryan Ho, Daniel Ryback, Basilin Benson, Cayla N Mason, Pedro J Torres, Robert A Quinn, Varykina G Thackray, Scott T Kelley | MSystems | 2021-09-14 | Abstract | |
| Reduced gut microbiome diversity in people with HIV who have distal neuropathic pain. | Ronald J Ellis, Robert K Heaton, Sara Gianella, Gibraan Rahman, Rob Knight | The Journal Of Pain | 2021-09-13 | Abstract | |
| Oligosaccharides and Microbiota in Human Milk Are Interrelated at 3 Months Postpartum in a Cohort of Women with a High Prevalence of Gestational Impaired Glucose Tolerance. | Lauren LeMay-Nedjelski, Chloe Yonemitsu, Michelle R Asbury, James Butcher, Sylvia H Ley, Anthony J Hanley, Alex Kiss, Sharon Unger, Julia K Copeland, Pauline W Wang, Alain Stintzi, Lars Bode, Deborah L O'Connor | The Journal Of Nutrition | 2021-09-11 | Abstract | |
| SARS-CoV-2 indoor air transmission is a threat that can be addressed with science. | Jonathan M Samet, Thomas A Burke, Seema S Lakdawala, John J Lowe, Linsey C Marr, Kimberly A Prather, Marilee Shelton-Davenport, John Volckens | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-09-09 | Abstract | |
| Dissecting the Shared Genetic Architecture of Suicide Attempt, Psychiatric Disorders, and Known Risk Factors. | Niamh Mullins, JooEun Kang, Adrian I Campos, Jonathan R I Coleman, Alexis C Edwards, Hanga Galfalvy, Daniel F Levey, Adriana Lori, Andrey Shabalin, Anna Starnawska, Mei-Hsin Su, Hunna J Watson, Mark Adams, Swapnil Awasthi, Michael Gandal, Jonathan D Hafferty, Akitoyo Hishimoto, Minsoo Kim, Satoshi Okazaki, Ikuo Otsuka, Stephan Ripke, Erin B Ware, Andrew W Bergen, Wade H Berrettini, Martin Bohus, Harry Brandt, Xiao Chang, Wei J Chen, Hsi-Chung Chen, Steven Crawford, Scott Crow, Emily DiBlasi, Philibert Duriez, Fernando Fernández-Aranda, Manfred M Fichter, Steven Gallinger, Stephen J Glatt, Philip Gorwood, Yiran Guo, Hakon Hakonarson, Katherine A Halmi, Hai-Gwo Hwu, Sonia Jain, Stéphane Jamain, Susana Jiménez-Murcia, Craig Johnson, Allan S Kaplan, Walter H Kaye, Pamela K Keel, James L Kennedy, Kelly L Klump, Dong Li, Shih-Cheng Liao, Klaus Lieb, Lisa Lilenfeld, Chih-Min Liu, Pierre J Magistretti, Christian R Marshall, James E Mitchell, Eric T Monson, Richard M Myers, Dalila Pinto, Abigail Powers, Nicolas Ramoz, Stefan Roepke, Vsevolod Rozanov, Stephen W Scherer, Christian Schmahl, Marcus Sokolowski, Michael Strober, Laura M Thornton, Janet Treasure, Ming T Tsuang, Stephanie H Witt, D Blake Woodside, Zeynep Yilmaz, Lea Zillich, Rolf Adolfsson, Ingrid Agartz, Tracy M Air, Martin Alda, Lars Alfredsson, Ole A Andreassen, Adebayo Anjorin, Vivek Appadurai, María Soler Artigas, Sandra Van der Auwera, M Helena Azevedo, Nicholas Bass, Claiton H D Bau, Bernhard T Baune, Frank Bellivier, Klaus Berger, Joanna M Biernacka, Tim B Bigdeli, Elisabeth B Binder, Michael Boehnke, Marco P Boks, Rosa Bosch, David L Braff, Richard Bryant, Monika Budde, Enda M Byrne, Wiepke Cahn, Miguel Casas, Enrique Castelao, Jorge A Cervilla, Boris Chaumette, Sven Cichon, Aiden Corvin, Nicholas Craddock, David Craig, Franziska Degenhardt, Srdjan Djurovic, Howard J Edenberg, Ayman H Fanous, Jerome C Foo, Andreas J Forstner, Mark Frye, Janice M Fullerton, Justine M Gatt, Pablo V Gejman, Ina Giegling, Hans J Grabe, Melissa J Green, Eugenio H Grevet, Maria Grigoroiu-Serbanescu, Blanca Gutierrez, Jose Guzman-Parra, Steven P Hamilton, Marian L Hamshere, Annette Hartmann, Joanna Hauser, Stefanie Heilmann-Heimbach, Per Hoffmann, Marcus Ising, Ian Jones, Lisa A Jones, Lina Jonsson, René S Kahn, John R Kelsoe, Kenneth S Kendler, Stefan Kloiber, Karestan C Koenen, Manolis Kogevinas, Bettina Konte, Marie-Odile Krebs, Mikael Landén, Jacob Lawrence, Marion Leboyer, Phil H Lee, Douglas F Levinson, Calwing Liao, Jolanta Lissowska, Susanne Lucae, Fermin Mayoral, Susan L McElroy, Patrick McGrath, Peter McGuffin, Andrew McQuillin, Sarah E Medland, Divya Mehta, Ingrid Melle, Yuri Milaneschi, Philip B Mitchell, Esther Molina, Gunnar Morken, Preben Bo Mortensen, Bertram Müller-Myhsok, Caroline Nievergelt, Vishwajit Nimgaonkar, Markus M Nöthen, Michael C O'Donovan, Roel A Ophoff, Michael J Owen, Carlos Pato, Michele T Pato, Brenda W J H Penninx, Jonathan Pimm, Giorgio Pistis, James B Potash, Robert A Power, Martin Preisig, Digby Quested, Josep Antoni Ramos-Quiroga, Andreas Reif, Marta Ribasés, Vanesa Richarte, Marcella Rietschel, Margarita Rivera, Andrea Roberts, Gloria Roberts, Guy A Rouleau, Diego L Rovaris, Dan Rujescu, Cristina Sánchez-Mora, Alan R Sanders, Peter R Schofield, Thomas G Schulze, Laura J Scott, Alessandro Serretti, Jianxin Shi, Stanley I Shyn, Lea Sirignano, Pamela Sklar, Olav B Smeland, Jordan W Smoller, Edmund J S Sonuga-Barke, Gianfranco Spalletta, John S Strauss, Beata Świątkowska, Maciej Trzaskowski, Gustavo Turecki, Laura Vilar-Ribó, John B Vincent, Henry Völzke, James T R Walters, Cynthia Shannon Weickert, Thomas W Weickert, Myrna M Weissman, Leanne M Williams, Naomi R Wray, Clement C Zai, Allison E Ashley-Koch, Jean C Beckham, Elizabeth R Hauser, Michael A Hauser, Nathan A Kimbrel, Jennifer H Lindquist, Benjamin McMahon, David W Oslin, Xuejun Qin, , , , , , , Esben Agerbo, Anders D Børglum, Gerome Breen, Annette Erlangsen, Tõnu Esko, Joel Gelernter, David M Hougaard, Ronald C Kessler, Henry R Kranzler, Qingqin S Li, Nicholas G Martin, Andrew M McIntosh, Ole Mors, Merete Nordentoft, Catherine M Olsen, David Porteous, Robert J Ursano, Danuta Wasserman, Thomas Werge, David C Whiteman, Cynthia M Bulik, Hilary Coon, Ditte Demontis, Anna R Docherty, Po-Hsiu Kuo, Cathryn M Lewis, J John Mann, Miguel E Rentería, Daniel J Smith, Eli A Stahl, Murray B Stein, Fabian Streit, Virginia Willour, Douglas M Ruderfer | Biological Psychiatry | 2021-09-09 | Abstract | |
| Bacterial Cytological Profiling Identifies Rhodanine-Containing PAINS Analogs as Specific Inhibitors of Thymidylate Kinase . | Elizabeth T Montaño, Jason F Nideffer, Joseph Sugie, Eray Enustun, Adam B Shapiro, Hannah Tsunemoto, Alan I Derman, Kit Pogliano, Joe Pogliano | Journal Of Bacteriology | 2021-09-08 | Abstract | |
| Gut microbiota alterations in response to sleep length among African-origin adults. | Na Fei, Candice Choo-Kang, Sirimon Reutrakul, Stephanie J Crowley, Dale Rae, Kweku Bedu-Addo, Jacob Plange-Rhule, Terrence E Forrester, Estelle V Lambert, Pascal Bovet, Walter Riesen, Wolfgang Korte, Amy Luke, Brian T Layden, Jack A Gilbert, Lara R Dugas | PloS One | 2021-09-08 | Abstract | |
| Trivalent Subunit Vaccine Candidates for COVID-19 and Their Delivery Devices. | Oscar A Ortega-Rivera, Matthew D Shin, Angela Chen, Veronique Beiss, Miguel A Moreno-Gonzalez, Miguel A Lopez-Ramirez, Maria Reynoso, Hong Wang, Brett L Hurst, Joseph Wang, Jonathan K Pokorski, Nicole F Steinmetz | Journal Of The American Chemical Society | 2021-09-07 | Abstract | |
| Vaccine genetics of IGHV1-2 VRC01-class broadly neutralizing antibody precursor naïve human B cells. | Jeong Hyun Lee, Laura Toy, Justin T Kos, Yana Safonova, William R Schief, Colin Havenar-Daughton, Corey T Watson, Shane Crotty | NPJ Vaccines | 2021-09-06 | Abstract | |
| Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes. | George W Armstrong, Kalen Cantrell, Shi Huang, Daniel McDonald, Niina Haiminen, Anna Paola Carrieri, Qiyun Zhu, Antonio Gonzalez, Imran McGrath, Kristen Beck, Daniel Hakim, Aki S Havulinna, Guillaume Méric, Teemu Niiranen, Leo Lahti, Veikko Salomaa, Mohit Jain, Michael Inouye, Austin D Swafford, Ho-Cheol Kim, Laxmi Parida, Yoshiki Vázquez-Baeza, Rob Knight | Genome Research | 2021-09-03 | Abstract | |
| Resurgence of SARS-CoV-2 Infection in a Highly Vaccinated Health System Workforce. | Jocelyn Keehner, Lucy E Horton, Nancy J Binkin, Louise C Laurent, David Pride, Christopher A Longhurst, Shira R Abeles, Francesca J Torriani | The New England Journal Of Medicine | 2021-09-01 | Abstract | |
| Making Sense of a Scent-Sensing Metaphor for Microbes and Environmental Predictions. | Jeff S Bowman | MSystems | 2021-08-31 | Abstract | |
| Structure-Based Optimization of Quinazolines as Cruzain and CATL Inhibitors. | Elany Barbosa da Silva, Débora A Rocha, Isadora S Fortes, Wenqian Yang, Ludovica Monti, Jair L Siqueira-Neto, Conor R Caffrey, James McKerrow, Saulo F Andrade, Rafaela S Ferreira | Journal Of Medicinal Chemistry | 2021-08-30 | Abstract | |
| Airborne transmission of respiratory viruses. | Chia C Wang, Kimberly A Prather, Josué Sznitman, Jose L Jimenez, Seema S Lakdawala, Zeynep Tufekci, Linsey C Marr | Science (New York, N.Y.) | 2021-08-27 | Abstract | |
| Decentralized vitamin C & D dual biosensor chip: Toward personalized immune system support. | Víctor Ruiz-Valdepeñas Montiel, Juliane R Sempionatto, Eva Vargas, Eileen Bailey, Jennifer May, Andrea Bulbarello, André Düsterloh, Nathan Matusheski, Joseph Wang | Biosensors & Bioelectronics | 2021-08-26 | Abstract | |
| Continuous measurements of volatile gases as detection of algae crop health. | Jon S Sauer, Ryan Simkovsky, Alexia N Moore, Luis Camarda, Summer L Sherman, Kimberly A Prather, Robert S Pomeroy | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-08-25 | Abstract | |
| Antibody responses induced by SHIV infection are more focused than those induced by soluble native HIV-1 envelope trimers in non-human primates. | Jelle van Schooten, Marlies M van Haaren, Hui Li, Laura E McCoy, Colin Havenar-Daughton, Christopher A Cottrell, Judith A Burger, Patricia van der Woude, Leanne C Helgers, Ilhan Tomris, Celia C Labranche, David C Montefiori, Andrew B Ward, Dennis R Burton, John P Moore, Rogier W Sanders, Shane Crotty, George M Shaw, Marit J van Gils | PLoS Pathogens | 2021-08-25 | Abstract | |
| Machine Learning of Bacterial Transcriptomes Reveals Responses Underlying Differential Antibiotic Susceptibility. | Anand V Sastry, Nicholas Dillon, Amitesh Anand, Saugat Poudel, Ying Hefner, Sibei Xu, Richard Szubin, Adam M Feist, Victor Nizet, Bernhard Palsson | MSphere | 2021-08-25 | Abstract | |
| Relating sinking and suspended microbial communities in the California Current Ecosystem: Digestion resistance and the contributions of phytoplankton taxa to export. | Bellineth Valencia, Michael R Stukel, Andrew E Allen, John P McCrow, Ariel Rabines, Brian Palenik, Michael R Landry | Environmental Microbiology | 2021-08-25 | Abstract | |
| Molecular Mirror Technology Facilitates High-Throughput, Accurate SARS-CoV-2 Testing. | Susan Realegeno, Sara Hash, Charlene Wong, Roland Liu, Jovan Shepherd, Robert T Schooley, David A Lipson, Frederick Fung, Suresh Menon, David T Pride | Microbiology Spectrum | 2021-08-25 | Abstract | |
| Antibody secreting cells are critically dependent on integrin α4β7/MAdCAM-1 for intestinal recruitment and control of the microbiota during chronic colitis. | Christopher J Tyler, Mauricio Guzman, Luke R Lundborg, Shaila Yeasmin, Nadia Zgajnar, Paul Jedlicka, Giorgos Bamias, Jesús Rivera-Nieves | Mucosal Immunology | 2021-08-25 | Abstract | |
| Aryl hydrocarbon receptor deficiency in intestinal epithelial cells aggravates alcohol-related liver disease. | Minyi Qian, Jun Liu, Danyang Zhao, Pengpeng Cai, Chuyue Pan, Wenxin Jia, Yingsheng Gao, Yufei Zhang, Nan Zhang, Yinan Zhang, Quan Zhang, Dalei Wu, Chengjie Shan, Meiling Zhang, Bernd Schnabl, Song Yang, Xu Shen, Lirui Wang | Cellular And Molecular Gastroenterology And Hepatology | 2021-08-25 | Abstract | |
| Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo. | Ye Gao, Hyun Gyu Lim, Hans Verkler, Richard Szubin, Daniel Quach, Irina Rodionova, Ke Chen, James T Yurkovich, Byung-Kwan Cho, Bernhard O Palsson | Nucleic Acids Research | 2021-08-24 | Abstract | |
| Early life gut microbiota is associated with rapid infant growth in Hispanics from Southern California. | Tanya L Alderete, Roshonda B Jones, Justin P Shaffer, Elizabeth A Holzhausen, William B Patterson, Elham Kazemian, Lida Chatzi, Rob Knight, Jasmine F Plows, Paige K Berger, Michael I Goran | Gut Microbes | 2021-08-23 | Abstract | |
| Intestinal virome and therapeutic potential of bacteriophages in liver disease. | Cynthia Hsu, Yi Duan, Derrick E Fouts, Bernd Schnabl | Journal Of Hepatology | 2021-08-23 | Abstract | |
| SARS-CoV-2 escape from a highly neutralizing COVID-19 convalescent plasma. | Emanuele Andreano, Giulia Piccini, Danilo Licastro, Lorenzo Casalino, Nicole V Johnson, Ida Paciello, Simeone Dal Monego, Elisa Pantano, Noemi Manganaro, Alessandro Manenti, Rachele Manna, Elisa Casa, Inesa Hyseni, Linda Benincasa, Emanuele Montomoli, Rommie E Amaro, Jason S McLellan, Rino Rappuoli | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-08-21 | Abstract | |
| An integrin αEβ7-dependent mechanism of IgA transcytosis requires direct plasma cell contact with intestinal epithelium. | Mauricio Guzman, Luke R Lundborg, Shaila Yeasmin, Christopher J Tyler, Nadia R Zgajnar, Vanessa Taupin, Katarzyna Dobaczewska, Zbigniew Mikulski, Giorgos Bamias, Jesús Rivera-Nieves | Mucosal Immunology | 2021-08-20 | Abstract | |
| Glycocalyx crowding with mucin mimetics strengthens binding of soluble and virus-associated lectins to host cell glycan receptors. | Daniel J Honigfort, Meghan O Altman, Pascal Gagneux, Kamil Godula | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-08-19 | Abstract | |
| Identification of a transcription factor, PunR, that regulates the purine and purine nucleoside transporter punC in E. coli. | Irina A Rodionova, Ye Gao, Anand Sastry, Ying Hefner, Hyun Gyu Lim, Dmitry A Rodionov, Milton H Saier, Bernhard O Palsson | Communications Biology | 2021-08-19 | Abstract | |
| Host DNA Depletion in Saliva Samples for Improved Shotgun Metagenomics. | Clarisse Marotz, Cristal Zuniga, Livia Zaramela, Rob Knight, Karsten Zengler | Methods In Molecular Biology (Clifton, N.J.) | 2021-08-19 | Abstract | |
| A novel class of TMPRSS2 inhibitors potently block SARS-CoV-2 and MERS-CoV viral entry and protect human epithelial lung cells. | Matthew Mahoney, Vishnu C Damalanka, Michael A Tartell, Dong Hee Chung, André Luiz Lourenço, Dustin Pwee, Anne E Mayer Bridwell, Markus Hoffmann, Jorine Voss, Partha Karmakar, Nurit P Azouz, Andrea M Klingler, Paul W Rothlauf, Cassandra E Thompson, Melody Lee, Lidija Klampfer, Christina L Stallings, Marc E Rothenberg, Stefan Pöhlmann, Sean P J Whelan, Anthony J O'Donoghue, Charles S Craik, James W Janetka | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-08-18 | Abstract | |
| Acremonamide, a Cyclic Pentadepsipeptide with Wound-Healing Properties Isolated from a Marine-Derived Fungus of the Genus . | Sojeong Kim, Chang Wook Lee, So-Yeon Park, Ratnakar N Asolkar, Haerin Kim, Geum Jin Kim, Song Jin Oh, Youngbae Kim, Eun-Young Lee, Dong-Chan Oh, Inho Yang, Man Jeong Paik, Hyukjae Choi, Hangun Kim, Sang-Jip Nam, William Fenical | Journal Of Natural Products | 2021-08-13 | Abstract | |
| Decreased Antibody Responses to Ad26.COV2.S Relative to SARS-CoV-2 mRNA Vaccines in Patients With Inflammatory Bowel Disease. | Valeriya Pozdnyakova, Gregory J Botwin, Kimia Sobhani, John Prostko, Jonathan Braun, Dermot P B Mcgovern, Gil Y Melmed, Keren Appel, Andrea Banty, Edward Feldman, Christina Ha, Rashmi Kumar, Susie Lee, Shervin Rabizadeh, Theodore Stein, Gaurav Syal, Stephan Targan, Eric Vasiliauskas, David Ziring, Philip Debbas, Melissa Hampton, Emebet Mengesha, James L Stewart, Edwin C Frias, Susan Cheng, Joseph Ebinger, Jane C Figueiredo, Brigid Boland, Aline Charabaty, Michael Chiorean, Erica Cohen, Ann Flynn, John Valentine, David Fudman, Arash Horizon, Jason Hou, Caroline Hwang, Mark Lazarev, Donald Lum, Rebecca Fausel, Swapna Reddy, Mark Mattar, Mark Metwally, Arthur Ostrov, Nimisha Parekh, Laura Raffals, Sarah Sheibani, Corey Siegel, Douglas Wolf, Ziad Younes | Gastroenterology | 2021-08-12 | Abstract | |
| Microbiota and Fatty Liver Disease-the Known, the Unknown, and the Future. | Sonja Lang, Bernd Schnabl | Cell Host & Microbe | 2021-08-12 | Abstract | |
| Risk factors for COVID-19 mortality in hospitalised children and adolescents in Brazil - Authors' reply. | Eduardo A Oliveira, Enrico A Colosimo, Ana Cristina Simões E Silva, Robert H Mak, Daniella B Martelli, Ludmila R Silva, Hercílio Martelli-Júnior, Maria Christina L Oliveira | The Lancet. Child & Adolescent Health | 2021-08-10 | Abstract | |
| Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus. | Smruthi Karthikeyan, Andrew Nguyen, Daniel McDonald, Yijian Zong, Nancy Ronquillo, Junting Ren, Jingjing Zou, Sawyer Farmer, Greg Humphrey, Diana Henderson, Tara Javidi, Karen Messer, Cheryl Anderson, Robert Schooley, Natasha K Martin, Rob Knight | MSystems | 2021-08-10 | Abstract | |
| Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. | Aleksandar Antanasijevic, Leigh M Sewall, Christopher A Cottrell, Diane G Carnathan, Luis E Jimenez, Julia T Ngo, Jennifer B Silverman, Bettina Groschel, Erik Georgeson, Jinal Bhiman, Raiza Bastidas, Celia LaBranche, Joel D Allen, Jeffrey Copps, Hailee R Perrett, Kimmo Rantalainen, Fabien Cannac, Yuhe R Yang, Alba Torrents de la Peña, Rebeca Froes Rocha, Zachary T Berndsen, David Baker, Neil P King, Rogier W Sanders, John P Moore, Shane Crotty, Max Crispin, David C Montefiori, Dennis R Burton, William R Schief, Guido Silvestri, Andrew B Ward | Nature Communications | 2021-08-10 | Abstract | |
| Clinical Practice Guideline by the Pediatric Infectious Diseases Society and the Infectious Diseases Society of America: 2021 Guideline on Diagnosis and Management of Acute Hematogenous Osteomyelitis in Pediatrics. | Charles R Woods, John S Bradley, Archana Chatterjee, Lawson A Copley, Joan Robinson, Matthew P Kronman, Antonio Arrieta, Sandra L Fowler, Christopher Harrison, Maria A Carrillo-Marquez, Sandra R Arnold, Stephen C Eppes, Laura P Stadler, Coburn H Allen, Lynnette J Mazur, C Buddy Creech, Samir S Shah, Theoklis Zaoutis, David S Feldman, Valéry Lavergne | Journal Of The Pediatric Infectious Diseases Society | 2021-08-05 | Abstract | |
| Chemical Gradients of Plant Substrates in an Fungus Garden. | Andrés Mauricio Caraballo-Rodríguez, Sara P Puckett, Kathleen E Kyle, Daniel Petras, Ricardo da Silva, Louis-Félix Nothias, Madeleine Ernst, Justin J J van der Hooft, Anupriya Tripathi, Mingxun Wang, Marcy J Balunas, Jonathan L Klassen, Pieter C Dorrestein | MSystems | 2021-08-03 | Abstract | |
| Variation in Microbial Exposure at the Human-Animal Interface and the Implications for Microbiome-Mediated Health Outcome. | Sahana Kuthyar, Aspen T Reese | MSystems | 2021-08-03 | Abstract | |
| Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom. | Aaron Oliver, Sheila Podell, Agnieszka Pinowska, Jesse C Traller, Sarah R Smith, Ryan McClure, Alex Beliaev, Pavlo Bohutskyi, Eric A Hill, Ariel Rabines, Hong Zheng, Lisa Zeigler Allen, Alan Kuo, Igor V Grigoriev, Andrew E Allen, David Hazlebeck, Eric E Allen | Scientific Reports | 2021-08-02 | Abstract | |
| Sleep Disturbances are a Significant Predictor of Chikungunya Arthritis Flare Severity. | Sarah R Tritsch, Richard Amdur, Liliana Encinales, Andres Cadena, Paige Fierbaugh, Geraldine Avendaño, Carlos Andres Herrera Gomez, Karol Suchowiecki, Evelyn Mendoza-Torres, Wendy Rosales, Dennys Jimenez, Carlos Alberto Perez Hernandez, Alfonso Sucerquia Hernandez, Paula Bruges Silvera, Yerlenis Galvis Crespo, Alberto David Cabana Jimenez, Jennifer Carolina Martinez Zapata, Christopher N Mores, Gary S Firestein, Gary Simon, Aileen Y Chang | Journal Of Cellular Immunology | 2021-07-29 | Abstract | |
| Oxitec and MosquitoMate in the United States: lessons for the future of gene drive mosquito control. | Cynthia E Schairer, James Najera, Anthony A James, Omar S Akbari, Cinnamon S Bloss | Pathogens And Global Health | 2021-07-27 | Abstract | |
| Dietary selection pressures and their impact on the gut microbiome. | Gertrude Ecklu-Mensah, Jack Gilbert, Suzanne Devkota | Cellular And Molecular Gastroenterology And Hepatology | 2021-07-27 | Abstract | |
| Emergence of an early SARS-CoV-2 epidemic in the United States. | Mark Zeller, Karthik Gangavarapu, Catelyn Anderson, Allison R Smither, John A Vanchiere, Rebecca Rose, Daniel J Snyder, Gytis Dudas, Alexander Watts, Nathaniel L Matteson, Refugio Robles-Sikisaka, Maximilian Marshall, Amy K Feehan, Gilberto Sabino-Santos, Antoinette R Bell-Kareem, Laura D Hughes, Manar Alkuzweny, Patricia Snarski, Julia Garcia-Diaz, Rona S Scott, Lilia I Melnik, Raphaëlle Klitting, Michelle McGraw, Pedro Belda-Ferre, Peter DeHoff, Shashank Sathe, Clarisse Marotz, Nathan D Grubaugh, David J Nolan, Arnaud C Drouin, Kaylynn J Genemaras, Karissa Chao, Sarah Topol, Emily Spencer, Laura Nicholson, Stefan Aigner, Gene W Yeo, Lauge Farnaes, Charlotte A Hobbs, Louise C Laurent, Rob Knight, Emma B Hodcroft, Kamran Khan, Dahlene N Fusco, Vaughn S Cooper, Phillipe Lemey, Lauren Gardner, Susanna L Lamers, Jeremy P Kamil, Robert F Garry, Marc A Suchard, Kristian G Andersen | Cell | 2021-07-27 | Abstract | |
| ACE2 Receptor-Modified Algae-Based Microrobot for Removal of SARS-CoV-2 in Wastewater. | Fangyu Zhang, Zhengxing Li, Lu Yin, Qiangzhe Zhang, Nelly Askarinam, Rodolfo Mundaca-Uribe, Farshad Tehrani, Emil Karshalev, Weiwei Gao, Liangfang Zhang, Joseph Wang | Journal Of The American Chemical Society | 2021-07-22 | Abstract | |
| Forming Consensus To Advance Urobiome Research. | Linda Brubaker, Jean-Philippe F Gourdine, Nazema Y Siddiqui, Amanda Holland, Thomas Halverson, Roberto Limeria, David Pride, Lenore Ackerman, Catherine S Forster, Kristin M Jacobs, Krystal J Thomas-White, Catherine Putonti, Qunfeng Dong, Michael Weinstein, Emily S Lukacz, Lisa Karstens, Alan J Wolfe | MSystems | 2021-07-20 | Abstract | |
| Nutritional Interventions and the Gut Microbiome in Children. | Saurabh Mehta, Samantha L Huey, Daniel McDonald, Rob Knight, Julia L Finkelstein | Annual Review Of Nutrition | 2021-07-20 | Abstract | |
| Association Between the Urogenital Microbiome and Surgical Treatment Response in Women Undergoing Mid-urethral Sling Surgery for Mixed Urinary Incontinence. | Holly E Richter, Megan U Carnes, Yuko M Komesu, Emily S Lukacz, Lily Arya, Megan Bradley, Rebecca G Rogers, Vivian W Sung, Nazema Y Siddiqui, Benjamin Carper, Donna Mazloomdoost, Darryl Dinwiddie, Marie G Gantz, | American Journal Of Obstetrics And Gynecology | 2021-07-20 | Abstract | |
| Special Collection on the Microbiome and Infection. | Manuela Raffatellu, Andreas J Bäumler | Infection And Immunity | 2021-07-19 | Abstract | |
| Comparison of heat-inactivated and infectious SARS-CoV-2 across indoor surface materials shows comparable RT-qPCR viral signal intensity and persistence. | Rodolfo A Salido, Victor J Cantú, Alex E Clark, Sandra L Leibel, Anahid Foroughishafiei, Anushka Saha, Abbas Hakim, Alhakam Nouri, Alma L Lastrella, Anelizze Castro-Martínez, Ashley Plascencia, Bhavika Kapadia, Bing Xia, Christopher Ruiz, Clarisse A Marotz, Daniel Maunder, Elijah S Lawrence, Elizabeth W Smoot, Emily Eisner, Evelyn S Crescini, Laura Kohn, Lizbeth Franco Vargas, Marisol Chacón, Maryann Betty, Michal Machnicki, Min Yi Wu, Nathan A Baer, Pedro Belda-Ferre, Peter De Hoff, Phoebe Seaver, R Tyler Ostrander, Rebecca Tsai, Shashank Sathe, Stefan Aigner, Sydney C Morgan, Toan T Ngo, Tom Barber, Willi Cheung, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Rebecca Fielding-Miller, Rob Knight | BioRxiv : The Preprint Server For Biology | 2021-07-19 | Abstract | |
| Dynamic Changes of the Fungal Microbiome in Alcohol Use Disorder. | Phillipp Hartmann, Sonja Lang, Suling Zeng, Yi Duan, Xinlian Zhang, Yanhan Wang, Marina Bondareva, Andrey Kruglov, Derrick E Fouts, Peter Stärkel, Bernd Schnabl | Frontiers In Physiology | 2021-07-19 | Abstract | |
| Portobelamides A and B and Caciqueamide, Cytotoxic Peptidic Natural Products from a sp. Marine Cyanobacterium. | Ozlem Demirkiran, Jehad Almaliti, Tiago Leão, Gabriel Navarro, Tara Byrum, Frederick A Valeriote, Lena Gerwick, William H Gerwick | Journal Of Natural Products | 2021-07-16 | Abstract | |
| The microbiome and prostate cancer. | Juan Javier-DesLoges, Rana R McKay, Austin D Swafford, Gregory D Sepich-Poore, Rob Knight, J Kellogg Parsons | Prostate Cancer And Prostatic Diseases | 2021-07-15 | Abstract | |
| A Pilot Study of Microbial Succession in Human Rib Skeletal Remains during Terrestrial Decomposition. | Heather Deel, Alexandra L Emmons, Jennifer Kiely, Franklin E Damann, David O Carter, Aaron Lynne, Rob Knight, Zhenjiang Zech Xu, Sibyl Bucheli, Jessica L Metcalf | MSphere | 2021-07-14 | Abstract | |
| HIV vaccinology: 2021 update. | Jeong Hyun Lee, Shane Crotty | Seminars In Immunology | 2021-07-13 | Abstract | |
| A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity. | Gongchao Jing, Yufeng Zhang, Lu Liu, Zengbin Wang, Zheng Sun, Rob Knight, Xiaoquan Su, Jian Xu | MSystems | 2021-07-13 | Abstract | |
| Artificial intelligence guided discovery of a barrier-protective therapy in inflammatory bowel disease. | Debashis Sahoo, Lee Swanson, Ibrahim M Sayed, Gajanan D Katkar, Stella-Rita Ibeawuchi, Yash Mittal, Rama F Pranadinata, Courtney Tindle, Mackenzie Fuller, Dominik L Stec, John T Chang, William J Sandborn, Soumita Das, Pradipta Ghosh | Nature Communications | 2021-07-12 | Abstract | |
| Quick-start infrastructure for untargeted metabolomics analysis in GNPS. | Tiago F Leao, Chase M Clark, Anelize Bauermeister, Emmanuel O Elijah, Emily C Gentry, Makhai Husband, Michelli F Oliveira, Nuno Bandeira, Mingxun Wang, Pieter C Dorrestein | Nature Metabolism | 2021-07-09 | Abstract | |
| Publisher Correction: Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery. | Bahar Behsaz, Edna Bode, Alexey Gurevich, Yan-Ni Shi, Florian Grundmann, Deepa Acharya, Andrés Mauricio Caraballo-Rodríguez, Amina Bouslimani, Morgan Panitchpakdi, Annabell Linck, Changhui Guan, Julia Oh, Pieter C Dorrestein, Helge B Bode, Pavel A Pevzner, Hosein Mohimani | Nature Communications | 2021-07-08 | Abstract | |
| Genome-wide CRISPR/Cas9 screening in human iPS derived cardiomyocytes uncovers novel mediators of doxorubicin cardiotoxicity. | Valerie Sapp, Aitor Aguirre, Gayatri Mainkar, Jeffrey Ding, Eric Adler, Ronglih Liao, Sonia Sharma, Mohit Jain | Scientific Reports | 2021-07-06 | Abstract | |
| Ruminiclostridium 5, Parabacteroides distasonis, and bile acid profile are modulated by prebiotic diet and associate with facilitated sleep/clock realignment after chronic disruption of rhythms. | Robert S Thompson, Michelle Gaffney, Shelby Hopkins, Tel Kelley, Antonio Gonzalez, Samuel J Bowers, Martha Hotz Vitaterna, Fred W Turek, Christine L Foxx, Christopher A Lowry, Fernando Vargas, Pieter C Dorrestein, Kenneth P Wright, Rob Knight, Monika Fleshner | Brain, Behavior, And Immunity | 2021-07-06 | Abstract | |
| Microbiome is not linked to clinical disease severity of familial Mediterranean fever in an international cohort of children. | Seza Ozen, Holly L Lutz, Vanessa M Rivera, Andreas Reiff, Ezgi Deniz Batu, Edwin Anderson, Mariana Salas Garcia, Grace Aldrovandi, Tayfun Hilmi Akbaba, İlker Pazarbasi, Yelda Bilginer, Ayse Balat, Banu Balci-Peynircioglu, Jack A Gilbert, Fatma Dedeoglu, Jonathan S Hausmann | Clinical And Experimental Rheumatology | 2021-07-05 | Abstract | |
| Gut Microbiota in Liver Disease: What Do We Know and What Do We Not Know? | Lu Jiang, Bernd Schnabl | Physiology (Bethesda, Md.) | 2021-07-01 | Abstract | |
| Display of the human mucinome with defined O-glycans by gene engineered cells. | Rebecca Nason, Christian Büll, Andriana Konstantinidi, Lingbo Sun, Zilu Ye, Adnan Halim, Wenjuan Du, Daniel M Sørensen, Fabien Durbesson, Sanae Furukawa, Ulla Mandel, Hiren J Joshi, Leo Alexander Dworkin, Lars Hansen, Leonor David, Tina M Iverson, Barbara A Bensing, Paul M Sullam, Ajit Varki, Erik de Vries, Cornelis A M de Haan, Renaud Vincentelli, Bernard Henrissat, Sergey Y Vakhrushev, Henrik Clausen, Yoshiki Narimatsu | Nature Communications | 2021-07-01 | Abstract | |
| The Relationships between HIV-1 Infection, History of Methamphetamine Use Disorder, and Soluble Biomarkers in Blood and Cerebrospinal Fluid. | T Jordan Walter, Jennifer Iudicello, Debra Rosario Cookson, Donald Franklin, Bin Tang, Jared W Young, William Perry, Ronald Ellis, Robert K Heaton, Igor Grant, Arpi Minassian, Scott Letendre, On Behalf Of The Translational Methamphetamine Aids Research Center Tmarc | Viruses | 2021-07-01 | Abstract | |
| Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome. | Shi Huang, Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu, Pedro Belda-Ferre, Yoshiki Vázquez-Baeza, Qiyun Zhu, Chenchen Ma, Congfa Li, Amir Zarrinpar, Yang-Yu Liu, Rob Knight, Jiachao Zhang | Microbiome | 2021-06-30 | Abstract | |
| Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome. | Celeste Allaband, Amulya Lingaraju, Cameron Martino, Baylee Russell, Anupriya Tripathi, Orit Poulsen, Ana Carolina Dantas Machado, Dan Zhou, Jin Xue, Emmanuel Elijah, Atul Malhotra, Pieter C Dorrestein, Rob Knight, Gabriel G Haddad, Amir Zarrinpar | MSystems | 2021-06-29 | Abstract | |
| The neglected brothers come of age: B cells and cancer. | Shabnam Shalapour, Michael Karin | Seminars In Immunology | 2021-06-29 | Abstract | |
| ORFograph: search for novel insecticidal protein genes in genomic and metagenomic assembly graphs. | Tatiana Dvorkina, Anton Bankevich, Alexei Sorokin, Fan Yang, Boahemaa Adu-Oppong, Ryan Williams, Keith Turner, Pavel A Pevzner | Microbiome | 2021-06-28 | Abstract | |
| Associations between Afrotropical bats, eukaryotic parasites, and microbial symbionts. | Holly L Lutz, Jack A Gilbert, Carl W Dick | Molecular Ecology | 2021-06-28 | Abstract | |
| Microbiota Modulates Cardiac Transcriptional Responses to Intermittent Hypoxia and Hypercapnia. | Dan Zhou, Jin Xue, Yukiko Miyamoto, Orit Poulsen, Lars Eckmann, Gabriel G Haddad | Frontiers In Physiology | 2021-06-25 | Abstract | |
| Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus. | Henrique Machado, Yara Seif, George Sakoulas, Connor A Olson, Ying Hefner, Amitesh Anand, Ying Z Jones, Richard Szubin, Bernhard O Palsson, Victor Nizet, Adam M Feist | Communications Biology | 2021-06-25 | Abstract | |
| Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops. | Matthew R Dillon, Evan Bolyen, Anja Adamov, Aeriel Belk, Emily Borsom, Zachary Burcham, Justine W Debelius, Heather Deel, Alex Emmons, Mehrbod Estaki, Chloe Herman, Christopher R Keefe, Jamie T Morton, Renato R M Oliveira, Andrew Sanchez, Anthony Simard, Yoshiki Vázquez-Baeza, Michal Ziemski, Hazuki E Miwa, Terry A Kerere, Carline Coote, Richard Bonneau, Rob Knight, Guilherme Oliveira, Piraveen Gopalasingam, Benjamin D Kaehler, Emily K Cope, Jessica L Metcalf, Michael S Robeson Ii, Nicholas A Bokulich, J Gregory Caporaso | PLoS Computational Biology | 2021-06-24 | Abstract | |
| induces maize-derived ethylene to promote virulence by engaging fungal G-protein signaling. | Yong-Soon Park, Eli J Borrego, Xiquan Gao, Shawn A Christensen, Eric Schmelz, Alessandra Lanubile, Dillon A Drab, Will Cody, Huijuan Yan, Won-Bo Shim, Michael V Kolomiets | Molecular Plant-microbe Interactions : MPMI | 2021-06-24 | Abstract | |
| Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth. | Colton J Lloyd, Jonathan Monk, Laurence Yang, Ali Ebrahim, Bernhard O Palsson | PLoS Computational Biology | 2021-06-23 | Abstract | |
| Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment. | Robin Schmid, Daniel Petras, Louis-Félix Nothias, Mingxun Wang, Allegra T Aron, Annika Jagels, Hiroshi Tsugawa, Johannes Rainer, Mar Garcia-Aloy, Kai Dührkop, Ansgar Korf, Tomáš Pluskal, Zdeněk Kameník, Alan K Jarmusch, Andrés Mauricio Caraballo-Rodríguez, Kelly C Weldon, Melissa Nothias-Esposito, Alexander A Aksenov, Anelize Bauermeister, Andrea Albarracin Orio, Carlismari O Grundmann, Fernando Vargas, Irina Koester, Julia M Gauglitz, Emily C Gentry, Yannick Hövelmann, Svetlana A Kalinina, Matthew A Pendergraft, Morgan Panitchpakdi, Richard Tehan, Audrey Le Gouellec, Gajender Aleti, Helena Mannochio Russo, Birgit Arndt, Florian Hübner, Heiko Hayen, Hui Zhi, Manuela Raffatellu, Kimberly A Prather, Lihini I Aluwihare, Sebastian Böcker, Kerry L McPhail, Hans-Ulrich Humpf, Uwe Karst, Pieter C Dorrestein | Nature Communications | 2021-06-22 | Abstract | |
| Gut microbiota mediate the FGF21 adaptive stress response to chronic dietary protein-restriction in mice. | Anthony Martin, Gertrude Ecklu-Mensah, Connie W Y Ha, Gustaf Hendrick, Donald K Layman, Jack Gilbert, Suzanne Devkota | Nature Communications | 2021-06-22 | Abstract | |
| Editorial: Regulators of a Regulator: Post-Transcriptional Regulation in Tregs. | Xuyu Zhou, Li-Fan Lu | Frontiers In Immunology | 2021-06-22 | Abstract | |
| The single-cell epigenomic and transcriptional landscape of immunity to influenza vaccination. | Florian Wimmers, Michele Donato, Alex Kuo, Tal Ashuach, Shakti Gupta, Chunfeng Li, Mai Dvorak, Mariko Hinton Foecke, Sarah E Chang, Thomas Hagan, Sanne E De Jong, Holden T Maecker, Robbert van der Most, Peggie Cheung, Mario Cortese, Steven E Bosinger, Mark Davis, Nadine Rouphael, Shankar Subramaniam, Nir Yosef, Paul J Utz, Purvesh Khatri, Bali Pulendran | Cell | 2021-06-22 | Abstract | |
| Alterations in bile acid metabolizing gut microbiota and specific bile acid genes as a precision medicine to subclassify NAFLD. | Na Jiao, Rohit Loomba, Zi-Huan Yang, Dingfeng Wu, Sa Fang, Richele Bettencourt, Ping Lan, Ruixin Zhu, Lixin Zhu | Physiological Genomics | 2021-06-21 | Abstract | |
| Use of Autologous Bacteriotherapy to Treat Staphylococcus aureus in Patients With Atopic Dermatitis: A Randomized Double-blind Clinical Trial. | Teruaki Nakatsuji, Richard L Gallo, Faiza Shafiq, Yun Tong, Kimberly Chun, Anna M Butcher, Joyce Y Cheng, Tissa R Hata | JAMA Dermatology | 2021-06-16 | Abstract | |
| Host and gut microbial tryptophan metabolism and type 2 diabetes: an integrative analysis of host genetics, diet, gut microbiome and circulating metabolites in cohort studies. | Qibin Qi, Jun Li, Bing Yu, Jee-Young Moon, Jin C Chai, Jordi Merino, Jie Hu, Miguel Ruiz-Canela, Casey Rebholz, Zheng Wang, Mykhaylo Usyk, Guo-Chong Chen, Bianca C Porneala, Wenshuang Wang, Ngoc Quynh Nguyen, Elena V Feofanova, Megan L Grove, Thomas J Wang, Robert E Gerszten, Josée Dupuis, Jordi Salas-Salvadó, Wei Bao, David L Perkins, Martha L Daviglus, Bharat Thyagarajan, Jianwen Cai, Tao Wang, JoAnn E Manson, Miguel A Martínez-González, Elizabeth Selvin, Kathryn M Rexrode, Clary B Clish, Frank B Hu, James B Meigs, Rob Knight, Robert D Burk, Eric Boerwinkle, Robert C Kaplan | Gut | 2021-06-14 | Abstract | |
| Colesevelam Reduces Ethanol-Induced Liver Steatosis in Humanized Gnotobiotic Mice. | Noemí Cabré, Yi Duan, Cristina Llorente, Mary Conrad, Patrick Stern, Dennis Yamashita, Bernd Schnabl | Cells | 2021-06-14 | Abstract | |
| AI-guided discovery of the invariant host response to viral pandemics. | Debashis Sahoo, Gajanan D Katkar, Soni Khandelwal, Mahdi Behroozikhah, Amanraj Claire, Vanessa Castillo, Courtney Tindle, MacKenzie Fuller, Sahar Taheri, Thomas F Rogers, Nathan Beutler, Sydney I Ramirez, Stephen A Rawlings, Victor Pretorius, Davey M Smith, Dennis R Burton, Laura E Crotty Alexander, Jason Duran, Shane Crotty, Jennifer M Dan, Soumita Das, Pradipta Ghosh | EBioMedicine | 2021-06-11 | Abstract | |
| Clinical characteristics and risk factors for death among hospitalised children and adolescents with COVID-19 in Brazil: an analysis of a nationwide database. | Eduardo A Oliveira, Enrico A Colosimo, Ana Cristina Simões E Silva, Robert H Mak, Daniella B Martelli, Ludmila R Silva, Hercílio Martelli-Júnior, Maria Christina L Oliveira | The Lancet. Child & Adolescent Health | 2021-06-11 | Abstract | |
| Metformin inhibition of mitochondrial ATP and DNA synthesis abrogates NLRP3 inflammasome activation and pulmonary inflammation. | Hongxu Xian, Yuan Liu, Alexandra Rundberg Nilsson, Raphaella Gatchalian, Timothy R Crother, Warren G Tourtellotte, Yi Zhang, German R Aleman-Muench, Gavin Lewis, Weixuan Chen, Sarah Kang, Melissa Luevanos, Dorit Trudler, Stuart A Lipton, Pejman Soroosh, John Teijaro, Juan Carlos de la Torre, Moshe Arditi, Michael Karin, Elsa Sanchez-Lopez | Immunity | 2021-06-10 | Abstract | |
| Social network analysis and whole-genome sequencing to evaluate disease transmission in a large, dynamic population: A study of avian mycobacteriosis in zoo birds. | Carmel Witte, James H Fowler, Wayne Pfeiffer, Laura L Hungerford, Josephine Braun, Jennifer Burchell, Rebecca Papendick, Bruce A Rideout | PloS One | 2021-06-09 | Abstract | |
| A segmentation clock patterns cellular differentiation in a bacterial biofilm. | Kwang-Tao Chou, Dong-Yeon D Lee, Jian-Geng Chiou, Leticia Galera-Laporta, San Ly, Jordi Garcia-Ojalvo, Gürol M Süel | Cell | 2021-06-09 | Abstract | |
| SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment. | Clarisse Marotz, Pedro Belda-Ferre, Farhana Ali, Promi Das, Shi Huang, Kalen Cantrell, Lingjing Jiang, Cameron Martino, Rachel E Diner, Gibraan Rahman, Daniel McDonald, George Armstrong, Sho Kodera, Sonya Donato, Gertrude Ecklu-Mensah, Neil Gottel, Mariana C Salas Garcia, Leslie Y Chiang, Rodolfo A Salido, Justin P Shaffer, Mac Kenzie Bryant, Karenina Sanders, Greg Humphrey, Gail Ackermann, Niina Haiminen, Kristen L Beck, Ho-Cheol Kim, Anna Paola Carrieri, Laxmi Parida, Yoshiki Vázquez-Baeza, Francesca J Torriani, Rob Knight, Jack Gilbert, Daniel A Sweeney, Sarah M Allard | Microbiome | 2021-06-08 | Abstract | |
| Airborne transmission pathway for coastal water pollution. | Matthew A Pendergraft, Derek J Grimes, Sarah N Giddings, Falk Feddersen, Charlotte M Beall, Christopher Lee, Mitchell V Santander, Kimberly A Prather | PeerJ | 2021-06-07 | Abstract | |
| Assessment of patient recognition of coronavirus disease 2019 (COVID-19)-associated olfactory loss and recovery: a longitudinal study. | Divya P Prajapati, Bita Shahrvini, Mena Said, Shanmukha Srinivas, Adam S DeConde, Carol H Yan | International Forum Of Allergy & Rhinology | 2021-06-06 | Abstract | |
| Coevolutionary phage training leads to greater bacterial suppression and delays the evolution of phage resistance. | Joshua M Borin, Sarit Avrani, Jeffrey E Barrick, Katherine L Petrie, Justin R Meyer | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-06-04 | Abstract | |
| Mining genomes to illuminate the specialized chemistry of life. | Marnix H Medema, Tristan de Rond, Bradley S Moore | Nature Reviews. Genetics | 2021-06-03 | Abstract | |
| Biotechnology for secure biocontainment designs in an emerging bioeconomy. | Kathleen L Arnolds, Lukas R Dahlin, Lin Ding, Chao Wu, Jianping Yu, Wei Xiong, Cristal Zuniga, Yo Suzuki, Karsten Zengler, Jeffrey G Linger, Michael T Guarnieri | Current Opinion In Biotechnology | 2021-06-03 | Abstract | |
| Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers. | Qiyun Zhu, Qiangchuan Hou, Shi Huang, Qianying Ou, Dongxue Huo, Yoshiki Vázquez-Baeza, Chaoping Cen, Victor Cantu, Mehrbod Estaki, Haibo Chang, Pedro Belda-Ferre, Ho-Cheol Kim, Kaining Chen, Rob Knight, Jiachao Zhang | The ISME Journal | 2021-06-02 | Abstract | |
| Compositional Differences in the Oral Microbiome of E-cigarette Users. | Jessica Chopyk, Christine M Bojanowski, John Shin, Alex Moshensky, Ana Lucia Fuentes, Saniya S Bonde, Dagni Chuki, David T Pride, Laura E Crotty Alexander | Frontiers In Microbiology | 2021-05-31 | Abstract | |
| Individuals with substance use disorders have a distinct oral microbiome pattern. | Tomasz Kosciolek, Teresa A Victor, Rayus Kuplicki, Maret Rossi, Mehrbod Estaki, Gail Ackermann, , Rob Knight, Martin P Paulus | Brain, Behavior, & Immunity - Health | 2021-05-29 | Abstract | |
| Non-alcoholic Steatohepatitis and HCC in a Hyperphagic Mouse Accelerated by Western Diet. | Souradipta Ganguly, German Aleman Muench, Linshan Shang, Sara Brin Rosenthal, Gibraan Rahman, Ruoyu Wang, Yanhan Wang, Hyeok Choon Kwon, Anthony M Diomino, Tatiana Kisseleva, Pejman Soorosh, Mojgan Hosseini, Rob Knight, Bernd Schnabl, David A Brenner, Debanjan Dhar | Cellular And Molecular Gastroenterology And Hepatology | 2021-05-29 | Abstract | |
| Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery. | Bahar Behsaz, Edna Bode, Alexey Gurevich, Yan-Ni Shi, Florian Grundmann, Deepa Acharya, Andrés Mauricio Caraballo-Rodríguez, Amina Bouslimani, Morgan Panitchpakdi, Annabell Linck, Changhui Guan, Julia Oh, Pieter C Dorrestein, Helge B Bode, Pavel A Pevzner, Hosein Mohimani | Nature Communications | 2021-05-28 | Abstract | |
| COVID-19 Severity Potentially Modulated by Cardiovascular-Disease-Associated Immune Dysregulation. | Abby C Lee, Grant Castaneda, Wei Tse Li, Chengyu Chen, Neil Shende, Jaideep Chakladar, Pam R Taub, Eric Y Chang, Weg M Ongkeko | Viruses | 2021-05-28 | Abstract | |
| Recurrent urinary tract infection: Association of clinical profiles with urobiome composition in women. | Lindsey A Burnett, Baylie R Hochstedler, Kelly Weldon, Alan J Wolfe, Linda Brubaker | Neurourology And Urodynamics | 2021-05-26 | Abstract | |
| Bromodomain protein BRD4 directs and sustains CD8 T cell differentiation during infection. | J Justin Milner, Clara Toma, Sara Quon, Kyla Omilusik, Nicole E Scharping, Anup Dey, Miguel Reina-Campos, Hongtuyet Nguyen, Adam J Getzler, Huitian Diao, Bingfei Yu, Arnaud Delpoux, Tomomi M Yoshida, Deyao Li, Jun Qi, Adam Vincek, Stephen M Hedrick, Takeshi Egawa, Ming-Ming Zhou, Shane Crotty, Keiko Ozato, Matthew E Pipkin, Ananda W Goldrath | The Journal Of Experimental Medicine | 2021-05-26 | Abstract | |
| Structure-based protein function prediction using graph convolutional networks. | Vladimir Gligorijević, P Douglas Renfrew, Tomasz Kosciolek, Julia Koehler Leman, Daniel Berenberg, Tommi Vatanen, Chris Chandler, Bryn C Taylor, Ian M Fisk, Hera Vlamakis, Ramnik J Xavier, Rob Knight, Kyunghyun Cho, Richard Bonneau | Nature Communications | 2021-05-26 | Abstract | |
| The quantitative metabolome is shaped by abiotic constraints. | Amir Akbari, James T Yurkovich, Daniel C Zielinski, Bernhard O Palsson | Nature Communications | 2021-05-26 | Abstract | |
| Kawasaki Disease Patient Stratification and Pathway Analysis Based on Host Transcriptomic and Proteomic Profiles. | Heather Jackson, Stephanie Menikou, Shea Hamilton, Andrew McArdle, Chisato Shimizu, Rachel Galassini, Honglei Huang, Jihoon Kim, Adriana Tremoulet, Adam Thorne, Roman Fischer, Marien I de Jonge, Taco Kuijpers, Victoria Wright, Jane C Burns, Climent Casals-Pascual, Jethro Herberg, Mike Levin, Myrsini Kaforou, On Behalf Of The Perform Consortium | International Journal Of Molecular Sciences | 2021-05-26 | Abstract | |
| Activatable Carbocyanine Dimers for Photoacoustic and Fluorescent Detection of Protease Activity. | Colman Moore, Raina M Borum, Yash Mantri, Ming Xu, Pavla Fajtová, Anthony J O'Donoghue, Jesse V Jokerst | ACS Sensors | 2021-05-26 | Abstract | |
| Sequence determinants in the cathelicidin LL37 that promote inflammation via presentation of RNA to scavenger receptors. | Nikhil N Kulkarni, Alan M O'Neill, Tatsuya Dokoshi, Elizabeth W C Luo, Gerard C L Wong, Richard L Gallo | The Journal Of Biological Chemistry | 2021-05-25 | Abstract | |
| Associations of healthy food choices with gut microbiota profiles. | Kari K Koponen, Aaro Salosensaari, Matti O Ruuskanen, Aki S Havulinna, Satu Männistö, Pekka Jousilahti, Joonatan Palmu, Rodolfo Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Guillaume Meric, Susan Cheng, Michael Inouye, Mohit Jain, Teemu J Niiranen, Liisa M Valsta, Rob Knight, Veikko V Salomaa | The American Journal Of Clinical Nutrition | 2021-05-21 | Abstract | |
| Hypoxia-Inducible Factor 1 Alpha Is Dispensable for Host Defense of Group B Streptococcus Colonization and Infection. | Gregory R Lum, Vicki Mercado, Diede van Ens, Victor Nizet, Jacqueline M Kimmey, Kathryn A Patras | Journal Of Innate Immunity | 2021-05-21 | Abstract | |
| Asymmetric localization of the cell division machinery during sporulation. | Kanika Khanna, Javier Lopez Garrido, Joseph Sugie, Kit Pogliano, Elizabeth Villa | ELife | 2021-05-21 | Abstract | |
| SARS-CoV-2 human T cell epitopes: Adaptive immune response against COVID-19. | Alba Grifoni, John Sidney, Randi Vita, Bjoern Peters, Shane Crotty, Daniela Weiskopf, Alessandro Sette | Cell Host & Microbe | 2021-05-21 | Abstract | |
| Impact of Vaginal Estrogen on the Urobiome in Postmenopausal Women With Recurrent Urinary Tract Infection. | Carrie E Jung, Mehrbod Estaki, Jessica Chopyk, Bryn C Taylor, Antonio Gonzalez, Daniel McDonald, Jenny Shin, Kimberly Ferrante, Erika Wasenda, Quinn Lippmann, Rob Knight, David Pride, Emily S Lukacz | Female Pelvic Medicine & Reconstructive Surgery | 2021-05-19 | Abstract | |
| Cross-reactive serum and memory B-cell responses to spike protein in SARS-CoV-2 and endemic coronavirus infection. | Ge Song, Wan-Ting He, Sean Callaghan, Fabio Anzanello, Deli Huang, James Ricketts, Jonathan L Torres, Nathan Beutler, Linghang Peng, Sirena Vargas, Jon Cassell, Mara Parren, Linlin Yang, Caroline Ignacio, Davey M Smith, James E Voss, David Nemazee, Andrew B Ward, Thomas Rogers, Dennis R Burton, Raiees Andrabi | Nature Communications | 2021-05-19 | Abstract | |
| Are sialic acids involved in COVID-19 pathogenesis? | Chirag Dhar, Aniruddha Sasmal, Sandra Diaz, Andrea Verhagen, Hai Yu, Wanqing Li, Xi Chen, Ajit Varki | Glycobiology | 2021-05-14 | Abstract | |
| Challenges in benchmarking metagenomic profilers. | Zheng Sun, Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen, Anna Paola Carrieri, Yoshiki Vázquez-Baeza, Laxmi Parida, Ho-Cheol Kim, Rob Knight, Yang-Yu Liu | Nature Methods | 2021-05-13 | Abstract | |
| Dysregulation of Glycerophosphocholines in the Cutaneous Lesion Caused by in Experimental Murine Models. | Adwaita R Parab, Diane Thomas, Sharon Lostracco-Johnson, Jair L Siqueira-Neto, James H McKerrow, Pieter C Dorrestein, Laura-Isobel McCall | Pathogens (Basel, Switzerland) | 2021-05-13 | Abstract | |
| Phylogenetic analysis of the salinipostin γ-butyrolactone gene cluster uncovers new potential for bacterial signalling-molecule diversity. | Kaitlin E Creamer, Yuta Kudo, Bradley S Moore, Paul R Jensen | Microbial Genomics | 2021-05-12 | Abstract | |
| Taxonomic signatures of cause-specific mortality risk in human gut microbiome. | Aaro Salosensaari, Ville Laitinen, Aki S Havulinna, Guillaume Meric, Susan Cheng, Markus Perola, Liisa Valsta, Georg Alfthan, Michael Inouye, Jeramie D Watrous, Tao Long, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Mohit Jain, Pekka Jousilahti, Veikko Salomaa, Rob Knight, Leo Lahti, Teemu Niiranen | Nature Communications | 2021-05-11 | Abstract | |
| Intratumoral bacteria generate a new class of therapeutically relevant tumor antigens in melanoma. | Gregory D Sepich-Poore, Hannah Carter, Rob Knight | Cancer Cell | 2021-05-11 | Abstract | |
| 3D Visualization of Immune Cell Populations in HIV-Infected Tissues via Clearing, Immunostaining, Confocal, and Light Sheet Fluorescence Microscopy. | Tongyu Zhang, Auroni Gupta, Deborah Frederick, Laura Layman, Davey M Smith, Sara Gianella, Collin Kieffer | Journal Of Visualized Experiments : JoVE | 2021-05-06 | Abstract | |
| Insight into the function and evolution of the Wood-Ljungdahl pathway in Actinobacteria. | Jian-Yu Jiao, Li Fu, Zheng-Shuang Hua, Lan Liu, Nimaichand Salam, Peng-Fei Liu, Ai-Ping Lv, Geng Wu, Wen-Dong Xian, Qiyun Zhu, En-Min Zhou, Bao-Zhu Fang, Aharon Oren, Brian P Hedlund, Hong-Chen Jiang, Rob Knight, Lei Cheng, Wen-Jun Li | The ISME Journal | 2021-05-05 | Abstract | |
| METTL3 regulates viral m6A RNA modification and host cell innate immune responses during SARS-CoV-2 infection. | Na Li, Hui Hui, Bill Bray, Gwendolyn Michelle Gonzalez, Mark Zeller, Kristian G Anderson, Rob Knight, Davey Smith, Yinsheng Wang, Aaron F Carlin, Tariq M Rana | Cell Reports | 2021-05-03 | Abstract | |
| Presence of asymptomatic cytomegalovirus and Epstein--Barr virus DNA in blood of persons with HIV starting antiretroviral therapy is associated with non-AIDS clinical events. | Sara Gianella, Carlee Moser, Andrej Vitomirov, Ashley McKhann, Laura Layman, Brianna Scott, Gemma Caballero, Steven Lada, Ronald J Bosch, Martin Hoenigl, Nell Lurain, Alan Landay, Michael M Lederman, Peter W Hunt, Davey Smith | AIDS (London, England) | 2021-05-01 | Abstract | |
| Microbes and Geriatric Mental Health: Past, Present, and Future. | Eleonora D Vaccariello, Tanya T Nguyen | International Psychogeriatrics | 2021-04-30 | Abstract | |
| Gut microbiota through an evolutionary lens. | Rachel N Carmody, Amar Sarkar, Aspen T Reese | Science (New York, N.Y.) | 2021-04-30 | Abstract | |
| Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data. | Lingjing Jiang, Niina Haiminen, Anna-Paola Carrieri, Shi Huang, Yoshiki Vã Zquez-Baeza, Laxmi Parida, Ho-Cheol Kim, Austin D Swafford, Rob Knight, Loki Natarajan | Biometrics | 2021-04-29 | Abstract | |
| Infant Gut Microbiome Is Enriched with Bifidobacteria longumssp. infantisin Old Order Mennoniteswith Traditional Farming Lifestyle. | Antti E Seppo, Kevin Bu, Madina Jumabaeva, Juilee Thakar, RakinA Choudhury, Chloe Yonemitsu, Lars Bode, Camille A Martina, Maria Allen, Sabrina Tamburini, Enrica Piras, David S Wallach, R John Looney, Jose C Clemente, Kirsi M Järvinen | Allergy | 2021-04-27 | Abstract | |
| Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition. | Clarisse Marotz, Kellen J Cavagnero, Se Jin Song, Daniel McDonald, Stephen Wandro, Greg Humphrey, MacKenzie Bryant, Gail Ackermann, Edgar Diaz, Rob Knight | MSystems | 2021-04-27 | Abstract | |
| Grincamycins P-T: Rearranged Angucyclines from the Marine Sediment-Derived sp. CNZ-748 Inhibit Cell Lines of the Rare Cancer Pseudomyxoma Peritonei. | Zhuo Shang, Zachary E Ferris, Douglas Sweeney, Alexander B Chase, Chunhua Yuan, Yvonne Hui, Lukuan Hou, Ethan A Older, Dan Xue, Xiaoyu Tang, Weipeng Zhang, Prakash Nagarkatti, Mitzi Nagarkatti, Traci L Testerman, Paul R Jensen, Jie Li | Journal Of Natural Products | 2021-04-26 | Abstract | |
| Combined analysis of gut microbiota, diet and PNPLA3 polymorphism in biopsy-proven non-alcoholic fatty liver disease. | Sonja Lang, Anna Martin, Xinlian Zhang, Fedja Farowski, Hilmar Wisplinghoff, Maria J G T Vehreschild, Marcin Krawczyk, Angela Nowag, Anne Kretzschmar, Claus Scholz, Philipp Kasper, Christoph Roderburg, Raphael Mohr, Frank Lammert, Frank Tacke, Bernd Schnabl, Tobias Goeser, Hans-Michael Steffen, Münevver Demir | Liver International : Official Journal Of The International Association For The Study Of The Liver | 2021-04-25 | Abstract | |
| The purine nucleoside phosphorylase pnp-1 regulates epithelial cell resistance to infection in C. elegans. | Eillen Tecle, Crystal B Chhan, Latisha Franklin, Ryan S Underwood, Wendy Hanna-Rose, Emily R Troemel | PLoS Pathogens | 2021-04-20 | Abstract | |
| Adjuvanting a subunit COVID-19 vaccine to induce protective immunity. | Prabhu S Arunachalam, Alexandra C Walls, Nadia Golden, Caroline Atyeo, Stephanie Fischinger, Chunfeng Li, Pyone Aye, Mary Jane Navarro, Lilin Lai, Venkata Viswanadh Edara, Katharina Röltgen, Kenneth Rogers, Lisa Shirreff, Douglas E Ferrell, Samuel Wrenn, Deleah Pettie, John C Kraft, Marcos C Miranda, Elizabeth Kepl, Claire Sydeman, Natalie Brunette, Michael Murphy, Brooke Fiala, Lauren Carter, Alexander G White, Meera Trisal, Ching-Lin Hsieh, Kasi Russell-Lodrigue, Christopher Monjure, Jason Dufour, Skye Spencer, Lara Doyle-Meyer, Rudolph P Bohm, Nicholas J Maness, Chad Roy, Jessica A Plante, Kenneth S Plante, Alex Zhu, Matthew J Gorman, Sally Shin, Xiaoying Shen, Jane Fontenot, Shakti Gupta, Derek T O'Hagan, Robbert Van Der Most, Rino Rappuoli, Robert L Coffman, David Novack, Jason S McLellan, Shankar Subramaniam, David Montefiori, Scott D Boyd, JoAnne L Flynn, Galit Alter, Francois Villinger, Harry Kleanthous, Jay Rappaport, Mehul S Suthar, Neil P King, David Veesler, Bali Pulendran | Nature | 2021-04-19 | Abstract | |
| Risk factors and characteristics associated with persistent smell loss in coronavirus disease 2019 (COVID-19) patients. | Bita Shahrvini, Divya P Prajapati, Mena Said, Jacklyn Liu, Shanmukha Srinivas, Samuel Jayaraj, Valerie J Lund, Adam S DeConde, Matt Lechner, Carol H Yan | International Forum Of Allergy & Rhinology | 2021-04-17 | Abstract | |
| Uremic Toxins in Organ Crosstalk. | Jerome Lowenstein, Sanjay K Nigam | Frontiers In Medicine | 2021-04-16 | Abstract | |
| Ten scientific reasons in support of airborne transmission of SARS-CoV-2. | Trisha Greenhalgh, Jose L Jimenez, Kimberly A Prather, Zeynep Tufekci, David Fisman, Robert Schooley | Lancet (London, England) | 2021-04-15 | Abstract | |
| Urinary microbiota of women with recurrent urinary tract infection: collection and culture methods. | Baylie R Hochstedler, Lindsey Burnett, Travis K Price, Carrie Jung, Alan J Wolfe, Linda Brubaker | International Urogynecology Journal | 2021-04-14 | Abstract | |
| Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection. | Andre Mu, Daniel McDonald, Alan K Jarmusch, Cameron Martino, Caitriona Brennan, Mackenzie Bryant, Gregory C Humphrey, Julia Toronczak, Tara Schwartz, Dominic Nguyen, Gail Ackermann, Anthony D'Onofrio, Steffanie A Strathdee, Robert T Schooley, Pieter C Dorrestein, Rob Knight, Saima Aslam | Microbiome | 2021-04-14 | Abstract | |
| Functional landscape of SARS-CoV-2 cellular restriction. | Laura Martin-Sancho, Mary K Lewinski, Lars Pache, Charlotte A Stoneham, Xin Yin, Mark E Becker, Dexter Pratt, Christopher Churas, Sara B Rosenthal, Sophie Liu, Stuart Weston, Paul D De Jesus, Alan M O'Neill, Anshu P Gounder, Courtney Nguyen, Yuan Pu, Heather M Curry, Aaron L Oom, Lisa Miorin, Ariel Rodriguez-Frandsen, Fan Zheng, Chunxiang Wu, Yong Xiong, Matthew Urbanowski, Megan L Shaw, Max W Chang, Christopher Benner, Thomas J Hope, Matthew B Frieman, Adolfo García-Sastre, Trey Ideker, Judd F Hultquist, John Guatelli, Sumit K Chanda | Molecular Cell | 2021-04-13 | Abstract | |
| Persistent Joint Pain Following Arthropod Virus Infections. | Karol Suchowiecki, St Patrick Reid, Gary L Simon, Gary S Firestein, Aileen Chang | Current Rheumatology Reports | 2021-04-13 | Abstract | |
| MrHAMER yields highly accurate single molecule viral sequences enabling analysis of intra-host evolution. | Christian M Gallardo, Shiyi Wang, Daniel J Montiel-Garcia, Susan J Little, Davey M Smith, Andrew L Routh, Bruce E Torbett | Nucleic Acids Research | 2021-04-13 | Abstract | |
| Structural Characterization of a Minimal Antibody against Human APOBEC3B. | Heng Tang, Özlem Demir, Fredy Kurniawan, William L Brown, Ke Shi, Nicholas H Moeller, Michael A Carpenter, Christopher Belica, Kayo Orellana, Guocheng Du, Aaron M LeBeau, Rommie E Amaro, Reuben S Harris, Hideki Aihara | Viruses | 2021-04-12 | Abstract | |
| Marinoterpins A-C: Rare Linear Merosesterterpenoids from Marine-Derived Actinomycete Bacteria of the Family Streptomycetaceae. | Min Cheol Kim, Jaclyn M Winter, Ratnakar N Asolkar, Chollaratt Boonlarppradab, Reiko Cullum, William Fenical | The Journal Of Organic Chemistry | 2021-04-12 | Abstract | |
| Genetic suppression of lethal mutations in fatty acid biosynthesis mediated by a secondary lipid synthase. | Marco N Allemann, Eric E Allen | Applied And Environmental Microbiology | 2021-04-09 | Abstract | |
| Influence of Intermittent Hypoxia/Hypercapnia on Atherosclerosis, Gut Microbiome, and Metabolome. | Jin Xue, Celeste Allaband, Dan Zhou, Orit Poulsen, Cameron Martino, Lingjing Jiang, Anupriya Tripathi, Emmanuel Elijah, Pieter C Dorrestein, Rob Knight, Amir Zarrinpar, Gabriel G Haddad | Frontiers In Physiology | 2021-04-08 | Abstract | |
| Children with Autism and Their Typically Developing Siblings Differ in Amplicon Sequence Variants and Predicted Functions of Stool-Associated Microbes. | Maude M David, Christine Tataru, Jena Daniels, Jessey Schwartz, Jessica Keating, Jarrad Hampton-Marcell, Neil Gottel, Jack A Gilbert, Dennis P Wall | MSystems | 2021-04-06 | Abstract | |
| Differential T cell reactivity to endemic coronaviruses and SARS-CoV-2 in community and health care workers. | Ricardo da Silva Antunes, Suresh Pallikkuth, Erin Williams, Dawen Yu Esther, Jose Mateus, Lorenzo Quiambao, Eric Wang, Stephen A Rawlings, Daniel Stadlbauer, Kaijun Jiang, Fatima Amanat, David Arnold, David Andrews, Irma Fuego, Jennifer M Dan, Alba Grifoni, Daniela Weiskopf, Florian Krammer, Shane Crotty, Michael E Hoffer, Savita G Pahwa, Alessandro Sette | The Journal Of Infectious Diseases | 2021-04-02 | Abstract | |
| Targeting Biofilm of MDR by Phages Using a Catheter Model. | Chani Rakov, Shira Ben Porat, Sivan Alkalay-Oren, Ortal Yerushalmy, Mohanad Abdalrhman, Niv Gronovich, Lina Huang, David Pride, Shunit Coppenhagen-Glazer, Ran Nir-Paz, Ronen Hazan | Antibiotics (Basel, Switzerland) | 2021-04-02 | Abstract | |
| An Introduction to Next Generation Sequencing Bioinformatic Analysis in Gut Microbiome Studies. | Bei Gao, Liang Chi, Yixin Zhu, Xiaochun Shi, Pengcheng Tu, Bing Li, Jun Yin, Nan Gao, Weishou Shen, Bernd Schnabl | Biomolecules | 2021-04-02 | Abstract | |
| A Clinical-Stage Cysteine Protease Inhibitor blocks SARS-CoV-2 Infection of Human and Monkey Cells. | Drake M Mellott, Chien-Te Tseng, Aleksandra Drelich, Pavla Fajtová, Bala C Chenna, Demetrios H Kostomiris, Jason Hsu, Jiyun Zhu, Zane W Taylor, Klaudia I Kocurek, Vivian Tat, Ardala Katzfuss, Linfeng Li, Miriam A Giardini, Danielle Skinner, Ken Hirata, Michael C Yoon, Sungjun Beck, Aaron F Carlin, Alex E Clark, Laura Beretta, Daniel Maneval, Vivian Hook, Felix Frueh, Brett L Hurst, Hong Wang, Frank M Raushel, Anthony J O'Donoghue, Jair Lage de Siqueira-Neto, Thomas D Meek, James H McKerrow | ACS Chemical Biology | 2021-03-31 | Abstract | |
| Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States. | Nicole L Washington, Karthik Gangavarapu, Mark Zeller, Alexandre Bolze, Elizabeth T Cirulli, Kelly M Schiabor Barrett, Brendan B Larsen, Catelyn Anderson, Simon White, Tyler Cassens, Sharoni Jacobs, Geraint Levan, Jason Nguyen, Jimmy M Ramirez, Charlotte Rivera-Garcia, Efren Sandoval, Xueqing Wang, David Wong, Emily Spencer, Refugio Robles-Sikisaka, Ezra Kurzban, Laura D Hughes, Xianding Deng, Candace Wang, Venice Servellita, Holly Valentine, Peter De Hoff, Phoebe Seaver, Shashank Sathe, Kimberly Gietzen, Brad Sickler, Jay Antico, Kelly Hoon, Jingtao Liu, Aaron Harding, Omid Bakhtar, Tracy Basler, Brett Austin, Duncan MacCannell, Magnus Isaksson, Phillip G Febbo, David Becker, Marc Laurent, Eric McDonald, Gene W Yeo, Rob Knight, Louise C Laurent, Eileen de Feo, Michael Worobey, Charles Y Chiu, Marc A Suchard, James T Lu, William Lee, Kristian G Andersen | Cell | 2021-03-30 | Abstract | |
| Thousands of previously unknown phages discovered in whole-community human gut metagenomes. | Sean Benler, Natalya Yutin, Dmitry Antipov, Mikhail Rayko, Sergey Shmakov, Ayal B Gussow, Pavel Pevzner, Eugene V Koonin | Microbiome | 2021-03-29 | Abstract | |
| Outpatient Treatment of Severe Acute Respiratory Syndrome Coronavirus 2 Infection to Prevent Coronavirus Disease 2019 Progression. | Myron S Cohen, David A Wohl, William A Fischer, Davey M Smith, Joseph J Eron | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-03-28 | Abstract | |
| Effects of processed meat and drinking water nitrate on oral and fecal microbial populations in a controlled feeding study. | Rashmi Sinha, Ni Zhao, James J Goedert, Doratha A Byrd, Yunhu Wan, Xing Hua, Autumn G Hullings, Rob Knight, Simone van Breda, Karen Mathijs, Theo M de Kok, Mary H Ward, | Environmental Research | 2021-03-27 | Abstract | |
| The oncogene AAMDC links PI3K-AKT-mTOR signaling with metabolic reprograming in estrogen receptor-positive breast cancer. | Emily Golden, Rabab Rashwan, Eleanor A Woodward, Agustin Sgro, Edina Wang, Anabel Sorolla, Charlene Waryah, Wan Jun Tie, Elisabet Cuyàs, Magdalena Ratajska, Iwona Kardaś, Piotr Kozlowski, Elizabeth K M Johnstone, Heng B See, Ciara Duffy, Jeremy Parry, Kim A Lagerborg, Piotr Czapiewski, Javier A Menendez, Adam Gorczyński, Bartosz Wasag, Kevin D G Pfleger, Christina Curtis, Bum-Kyu Lee, Jonghwan Kim, Joseph Cursons, Nathan J Pavlos, Wojciech Biernat, Mohit Jain, Andrew J Woo, Andrew Redfern, Pilar Blancafort | Nature Communications | 2021-03-26 | Abstract | |
| The microbiome and human cancer. | Gregory D Sepich-Poore, Laurence Zitvogel, Ravid Straussman, Jeff Hasty, Jennifer A Wargo, Rob Knight | Science (New York, N.Y.) | 2021-03-26 | Abstract | |
| Reversible -Acetyl Migration within the Sialic Acid Side Chain and Its Influence on Protein Recognition. | Yang Ji, Aniruddha Sasmal, Wanqing Li, Lisa Oh, Saurabh Srivastava, Audra A Hargett, Brian R Wasik, Hai Yu, Sandra Diaz, Biswa Choudhury, Colin R Parrish, Darón I Freedberg, Lee-Ping Wang, Ajit Varki, Xi Chen | ACS Chemical Biology | 2021-03-26 | Abstract | |
| Validity of 2020 vancomycin consensus recommendations and further guidance for practical application. | Michael J Rybak, Jennifer Le, Thomas P Lodise, Donald P Levine, John S Bradley, Catherine Liu, Bruce A Mueller, Manjunath P Pai, Annie-Wong Beringer, Keith A Rodvold, Holly D Maples | American Journal Of Health-system Pharmacy : AJHP : Official Journal Of The American Society Of Health-System Pharmacists | 2021-03-26 | Abstract | |
| Comparison of Two Approaches for the Metataxonomic Analysis of the Human Milk Microbiome. | Lorena Ruiz, Claudio Alba, Cristina García-Carral, Esther A Jiménez, Kimberly A Lackey, Michelle K McGuire, Courtney L Meehan, James Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, Debela Gindola K, Gloria E Otoo, Rossina G Pareja, Lars Bode, Mark A McGuire, Janet E Williams, Juan M Rodríguez | Frontiers In Cellular And Infection Microbiology | 2021-03-25 | Abstract | |
| Association of Loneliness and Wisdom With Gut Microbial Diversity and Composition: An Exploratory Study. | Tanya T Nguyen, Xinlian Zhang, Tsung-Chin Wu, Jinyuan Liu, Collin Le, Xin M Tu, Rob Knight, Dilip V Jeste | Frontiers In Psychiatry | 2021-03-25 | Abstract | |
| Tandem Fluorescence Measurements of Organic Matter and Bacteria Released in Sea Spray Aerosols. | Mitchell V Santander, Brock A Mitts, Matthew A Pendergraft, Julie Dinasquet, Christopher Lee, Alexia N Moore, Lucia B Cancelada, Ke'La A Kimble, Francesca Malfatti, Kimberly A Prather | Environmental Science & Technology | 2021-03-23 | Abstract | |
| Renal and non-renal response of ABC and SLC transporters in chronic kidney disease. | Adriana M Torres, Ankur V Dnyanmote, Jeffry C Granados, Sanjay K Nigam | Expert Opinion On Drug Metabolism & Toxicology | 2021-03-22 | Abstract | |
| Coordinate regulation of systemic and kidney tryptophan metabolism by the drug transporters OAT1 and OAT3. | Jeffry C Granados, Anne Richelle, Jahir M Gutierrez, Patrick Zhang, Xinlian Zhang, Vibha Bhatnagar, Nathan E Lewis, Sanjay K Nigam | The Journal Of Biological Chemistry | 2021-03-21 | Abstract | |
| Driving to Safety: CRISPR-Based Genetic Approaches to Reducing Antibiotic Resistance. | Ethan Bier, Victor Nizet | Trends In Genetics : TIG | 2021-03-18 | Abstract | |
| Author Correction: Gut microbiome pattern reflects healthy ageing and predicts survival in humans. | Tomasz Wilmanski, Christian Diener, Noa Rappaport, Sushmita Patwardhan, Jack Wiedrick, Jodi Lapidus, John C Earls, Anat Zimmer, Gustavo Glusman, Max Robinson, James T Yurkovich, Deborah M Kado, Jane A Cauley, Joseph Zmuda, Nancy E Lane, Andrew T Magis, Jennifer C Lovejoy, Leroy Hood, Sean M Gibbons, Eric S Orwoll, Nathan D Price | Nature Metabolism | 2021-03-18 | Abstract | |
| EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets. | Kalen Cantrell, Marcus W Fedarko, Gibraan Rahman, Daniel McDonald, Yimeng Yang, Thant Zaw, Antonio Gonzalez, Stefan Janssen, Mehrbod Estaki, Niina Haiminen, Kristen L Beck, Qiyun Zhu, Erfan Sayyari, James T Morton, George Armstrong, Anupriya Tripathi, Julia M Gauglitz, Clarisse Marotz, Nathaniel L Matteson, Cameron Martino, Jon G Sanders, Anna Paola Carrieri, Se Jin Song, Austin D Swafford, Pieter C Dorrestein, Kristian G Andersen, Laxmi Parida, Ho-Cheol Kim, Yoshiki Vázquez-Baeza, Rob Knight | MSystems | 2021-03-16 | Abstract | |
| A Cyanobacterial Component Required for Pilus Biogenesis Affects the Exoproteome. | Yevgeni Yegorov, Eleonora Sendersky, Shaul Zilberman, Elad Nagar, Hiba Waldman Ben-Asher, Eyal Shimoni, Ryan Simkovsky, Susan S Golden, Andy LiWang, Rakefet Schwarz | MBio | 2021-03-16 | Abstract | |
| SARS-CoV-2 Screening Among Symptom-Free Healthcare Workers. | Ryan T Demmer, Angela K Ulrich, Talia D Wiggen, Ali Strickland, Brianna M Naumchik, Shalini Kulasingam, Steven D Stovitz, Clarisse Marotz, Pedro Belda-Ferre, Greg Humphrey, Peter De Hoff, Louise Laurent, Susan Kline, Rob Knight | Infection Control And Hospital Epidemiology | 2021-03-12 | Abstract | |
| An 11-Year-old Male With X-linked Agammaglobulinemia and Persistent Abdominal Pain. | Natalie B Fettinger, John S Bradley, Nanda Ramchandar | The Pediatric Infectious Disease Journal | 2021-03-12 | Abstract | |
| Pharmacokinetics and Safety of Single-dose Tedizolid Phosphate in Children 2 to <12 Years of Age. | Antonio C Arrieta, Jocelyn Y Ang, Claudia Espinosa, Oleksandr Fofanov, Camilla Tøndel, Margaret Z Chou, Carisa S De Anda, Jason Y Kim, Dan Li, Philip Sabato, Pamela S Sears, John S Bradley | The Pediatric Infectious Disease Journal | 2021-03-12 | Abstract | |
| COVID-19 and older adults with bipolar disorder: Problems and solutions. | Osvaldo P Almeida, Esther Jimenez, Soham Rej, Lisa Eyler, Martha Sajatovic, Annemiek Dols | Bipolar Disorders | 2021-03-12 | Abstract | |
| Cardiac Rehab in the COVID Era and Beyond: mHealth and Other Novel Opportunities. | Elizabeth Epstein, Neeja Patel, Kathryn Maysent, Pam R Taub | Current Cardiology Reports | 2021-03-11 | Abstract | |
| Dietary factors, gut microbiota, and serum trimethylamine-N-oxide associated with cardiovascular disease in the Hispanic Community Health Study/Study of Latinos. | Zhendong Mei, Guo-Chong Chen, Zheng Wang, Mykhaylo Usyk, Bing Yu, Yoshiki Vazquez Baeza, Greg Humphrey, Rodolfo Salido Benitez, Jun Li, Jessica S Williams-Nguyen, Martha L Daviglus, Lifang Hou, Jianwen Cai, Yan Zheng, Rob Knight, Robert D Burk, Eric Boerwinkle, Robert C Kaplan, Qibin Qi | The American Journal Of Clinical Nutrition | 2021-03-11 | Abstract | |
| Conjugation to Enterobactin and Salmochelin S4 Enhances the Antimicrobial Activity and Selectivity of β-Lactam Antibiotics against Nontyphoidal . | Artur Sargun, Martina Sassone-Corsi, Tengfei Zheng, Manuela Raffatellu, Elizabeth M Nolan | ACS Infectious Diseases | 2021-03-10 | Abstract | |
| Exploring the Composition and Functions of Plastic Microbiome Using Whole-Genome Sequencing. | Geetika Bhagwat, Qiyun Zhu, Wayne O'Connor, Suresh Subashchandrabose, Ian Grainge, Rob Knight, Thava Palanisami | Environmental Science & Technology | 2021-03-09 | Abstract | |
| Staphylococcus aureus Enters Hair Follicles Using Triacylglycerol Lipases Preserved through the Genus Staphylococcus. | Kouki Nakamura, Michael R Williams, Jakub M Kwiecinski, Alexander R Horswill, Richard L Gallo | The Journal Of Investigative Dermatology | 2021-03-09 | Abstract | |
| Disease-related mutations in PI3Kγ disrupt regulatory C-terminal dynamics and reveal a path to selective inhibitors. | Manoj K Rathinaswamy, Zied Gaieb, Kaelin D Fleming, Chiara Borsari, Noah J Harris, Brandon E Moeller, Matthias P Wymann, Rommie E Amaro, John E Burke | ELife | 2021-03-04 | Abstract | |
| Proton pump inhibitor use status does not modify the microbiome signature for cirrhosis. | Tae Gyu Oh, Susy M Kim, Annette R Atkins, Ruth T Yu, Michael Downes, Ronald M Evans, Rohit Loomba | Cell Metabolism | 2021-03-03 | Abstract | |
| High-Throughput Wastewater SARS-CoV-2 Detection Enables Forecasting of Community Infection Dynamics in San Diego County. | Smruthi Karthikeyan, Nancy Ronquillo, Pedro Belda-Ferre, Destiny Alvarado, Tara Javidi, Christopher A Longhurst, Rob Knight | MSystems | 2021-03-02 | Abstract | |
| Links between gut microbiome composition and fatty liver disease in a large population sample. | Matti O Ruuskanen, Fredrik Åberg, Ville Männistö, Aki S Havulinna, Guillaume Méric, Yang Liu, Rohit Loomba, Yoshiki Vázquez-Baeza, Anupriya Tripathi, Liisa M Valsta, Michael Inouye, Pekka Jousilahti, Veikko Salomaa, Mohit Jain, Rob Knight, Leo Lahti, Teemu J Niiranen | Gut Microbes | 2021-03-02 | Abstract | |
| Gut microbiota dysbiosis is associated with worse emotional states in HIV infection. | Josué Pérez-Santiago, María J Marquine, Debralee Cookson, Rafael Giraud-Colón, Robert K Heaton, Igor Grant, Ronald J Ellis, Scott L Letendre, Scott N Peterson | Journal Of Neurovirology | 2021-03-02 | Abstract | |
| Bcl6-Mediated Transcriptional Regulation of Follicular Helper T cells (T). | Jinyong Choi, Shane Crotty | Trends In Immunology | 2021-03-01 | Abstract | |
| Spatial variability of prokaryotic and viral abundances in the Kermadec and Atacama Trench regions. | Clemens Schauberger, Mathias Middelboe, Morten Larsen, Logan M Peoples, Douglas H Bartlett, Finn Kirpekar, Ashley A Rowden, Frank Wenzhöfer, Bo Thamdrup, Ronnie N Glud | Limnology And Oceanography | 2021-02-28 | Abstract | |
| Dissociation of DNA damage sensing by endoglycosidase HPSE. | Alex Agelidis, Rahul K Suryawanshi, Chandrashekhar D Patil, Anaamika Campeau, David J Gonzalez, Deepak Shukla | IScience | 2021-02-27 | Abstract | |
| Hitting the diagnostic sweet spot: Point-of-care SARS-CoV-2 salivary antigen testing with an off-the-shelf glucometer. | Naveen K Singh, Partha Ray, Aaron F Carlin, Celestine Magallanes, Sydney C Morgan, Louise C Laurent, Eliah S Aronoff-Spencer, Drew A Hall | Biosensors & Bioelectronics | 2021-02-26 | Abstract | |
| Associations of fecal microbial profiles with breast cancer and nonmalignant breast disease in the Ghana Breast Health Study. | Doratha A Byrd, Emily Vogtmann, Zeni Wu, Yongli Han, Yunhu Wan, Joe-Nat Clegg-Lamptey, Joel Yarney, Beatrice Wiafe-Addai, Seth Wiafe, Baffour Awuah, Daniel Ansong, Kofi Nyarko, Autumn G Hullings, Xing Hua, Thomas Ahearn, James J Goedert, Jianxin Shi, Rob Knight, Jonine D Figueroa, Louise A Brinton, Montserrat Garcia-Closas, Rashmi Sinha | International Journal Of Cancer | 2021-02-26 | Abstract | |
| Identification of an N-acetylneuraminic acid-presenting bacteria isolated from a human microbiome. | Zhen Han, Peter S Thuy-Boun, Wayne Pfeiffer, Vincent F Vartabedian, Ali Torkamani, John R Teijaro, Dennis W Wolan | Scientific Reports | 2021-02-26 | Abstract | |
| The Molecular Basis for Life in Extreme Environments. | Nozomi Ando, Blanca Barquera, Douglas H Bartlett, Eric Boyd, Audrey A Burnim, Amanda S Byer, Daniel Colman, Richard E Gillilan, Martin Gruebele, George Makhatadze, Catherine A Royer, Everett Shock, A Joshua Wand, Maxwell B Watkins | Annual Review Of Biophysics | 2021-02-26 | Abstract | |
| Genomic relatedness and clinical significance of strains isolated from the urogenital tract of sexual partners. | Carine R Mores, Travis K Price, Birte Wolff, Thomas Halverson, Roberto Limeira, Linda Brubaker, Elizabeth R Mueller, Catherine Putonti, Alan J Wolfe | Microbial Genomics | 2021-02-25 | Abstract | |
| Searching for host immune-microbiome mechanisms in obsessive-compulsive disorder: A narrative literature review and future directions. | Emily A Troyer, Jordan N Kohn, Gertrude Ecklu-Mensah, Gajender Aleti, David R Rosenberg, Suzi Hong | Neuroscience And Biobehavioral Reviews | 2021-02-24 | Abstract | |
| The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection. | Fatemeh Askarian, Satoshi Uchiyama, Helen Masson, Henrik Vinther Sørensen, Ole Golten, Anne Cathrine Bunæs, Sophanit Mekasha, Åsmund Kjendseth Røhr, Eirik Kommedal, Judith Anita Ludviksen, Magnus Ø Arntzen, Benjamin Schmidt, Raymond H Zurich, Nina M van Sorge, Vincent G H Eijsink, Ute Krengel, Tom Eirik Mollnes, Nathan E Lewis, Victor Nizet, Gustav Vaaje-Kolstad | Nature Communications | 2021-02-23 | Abstract | |
| Intestinal α1-2-Fucosylation Contributes to Obesity and Steatohepatitis in Mice. | Rongrong Zhou, Cristina Llorente, Jinling Cao, Livia S Zaramela, Suling Zeng, Bei Gao, Shang-Zhen Li, Ryan D Welch, Feng-Qing Huang, Lian-Wen Qi, Chuyue Pan, Yan Huang, Pengchen Zhou, Iris Beussen, Ying Zhang, Gregory Bryam, Oliver Fiehn, Lirui Wang, E-Hu Liu, Ruth T Yu, Michael Downes, Ronald M Evans, Karrie Goglin, Derrick E Fouts, David A Brenner, Lars Bode, Xuegong Fan, Karsten Zengler, Bernd Schnabl | Cellular And Molecular Gastroenterology And Hepatology | 2021-02-22 | Abstract | |
| Development of a human skin commensal microbe for bacteriotherapy of atopic dermatitis and use in a phase 1 randomized clinical trial. | Teruaki Nakatsuji, Tissa R Hata, Yun Tong, Joyce Y Cheng, Faiza Shafiq, Anna M Butcher, Secilia S Salem, Samantha L Brinton, Amanda K Rudman Spergel, Keli Johnson, Brett Jepson, Agustin Calatroni, Gloria David, Marco Ramirez-Gama, Patricia Taylor, Donald Y M Leung, Richard L Gallo | Nature Medicine | 2021-02-22 | Abstract | |
| RAMIC: Design of a randomized, double-blind, placebo-controlled trial to evaluate the efficacy of ramipril in patients with COVID-19. | Veeral Ajmera, Wesley K Thompson, Davey M Smith, Atul Malhotra, Ravindra L Mehta, Vaishal Tolia, Jeffrey Yin, Krishna Sriram, Paul A Insel, Summer Collier, Lisa Richards, Rohit Loomba | Contemporary Clinical Trials | 2021-02-22 | Abstract | |
| Carbohydrates great and small, from dietary fiber to sialic acids: How glycans influence the gut microbiome and affect human health. | Joanna K Coker, Oriane Moyne, Dmitry A Rodionov, Karsten Zengler | Gut Microbes | 2021-02-22 | Abstract | |
| Antimicrobial prescribing for treatment of serious infections caused by Staphylococcus aureus and methicillin-resistant Staphylococcus aureus in pediatrics: an expert review. | Sean N Avedissian, Nathanial J Rhodes, Christopher L Shaffer, Lan Tran, John S Bradley, Jennifer Le | Expert Review Of Anti-infective Therapy | 2021-02-21 | Abstract | |
| Open Science Resources for the Mass Spectrometry-Based Analysis of SARS-CoV-2. | Wout Bittremieux, Charlotte Adams, Kris Laukens, Pieter C Dorrestein, Nuno Bandeira | Journal Of Proteome Research | 2021-02-19 | Abstract | |
| Sensitivity of the mangrove-estuarine microbial community to aquaculture effluent. | Natalia G Erazo, Jeff S Bowman | IScience | 2021-02-18 | Abstract | |
| Chemical interplay and complementary adaptative strategies toggle bacterial antagonism and co-existence. | Carlos Molina-Santiago, David Vela-Corcía, Daniel Petras, Luis Díaz-Martínez, Alicia Isabel Pérez-Lorente, Sara Sopeña-Torres, John Pearson, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein, Antonio de Vicente, Diego Romero | Cell Reports | 2021-02-18 | Abstract | |
| Gut microbiome pattern reflects healthy ageing and predicts survival in humans. | Tomasz Wilmanski, Christian Diener, Noa Rappaport, Sushmita Patwardhan, Jack Wiedrick, Jodi Lapidus, John C Earls, Anat Zimmer, Gustavo Glusman, Max Robinson, James T Yurkovich, Deborah M Kado, Jane A Cauley, Joseph Zmuda, Nancy E Lane, Andrew T Magis, Jennifer C Lovejoy, Leroy Hood, Sean M Gibbons, Eric S Orwoll, Nathan D Price | Nature Metabolism | 2021-02-18 | Abstract | |
| A community resource for paired genomic and metabolomic data mining. | Michelle A Schorn, Stefan Verhoeven, Lars Ridder, Florian Huber, Deepa D Acharya, Alexander A Aksenov, Gajender Aleti, Jamshid Amiri Moghaddam, Allegra T Aron, Saefuddin Aziz, Anelize Bauermeister, Katherine D Bauman, Martin Baunach, Christine Beemelmanns, J Michael Beman, María Victoria Berlanga-Clavero, Alex A Blacutt, Helge B Bode, Anne Boullie, Asker Brejnrod, Tim S Bugni, Alexandra Calteau, Liu Cao, Víctor J Carrión, Raquel Castelo-Branco, Shaurya Chanana, Alexander B Chase, Marc G Chevrette, Leticia V Costa-Lotufo, Jason M Crawford, Cameron R Currie, Bart Cuypers, Tam Dang, Tristan de Rond, Alyssa M Demko, Elke Dittmann, Chao Du, Christopher Drozd, Jean-Claude Dujardin, Rachel J Dutton, Anna Edlund, David P Fewer, Neha Garg, Julia M Gauglitz, Emily C Gentry, Lena Gerwick, Evgenia Glukhov, Harald Gross, Muriel Gugger, Dulce G Guillén Matus, Eric J N Helfrich, Benjamin-Florian Hempel, Jae-Seoun Hur, Marianna Iorio, Paul R Jensen, Kyo Bin Kang, Leonard Kaysser, Neil L Kelleher, Chung Sub Kim, Ki Hyun Kim, Irina Koester, Gabriele M König, Tiago Leao, Seoung Rak Lee, Yi-Yuan Lee, Xuanji Li, Jessica C Little, Katherine N Maloney, Daniel Männle, Christian Martin H, Andrew C McAvoy, Willam W Metcalf, Hosein Mohimani, Carlos Molina-Santiago, Bradley S Moore, Michael W Mullowney, Mitchell Muskat, Louis-Félix Nothias, Ellis C O'Neill, Elizabeth I Parkinson, Daniel Petras, Jörn Piel, Emily C Pierce, Karine Pires, Raphael Reher, Diego Romero, M Caroline Roper, Michael Rust, Hamada Saad, Carmen Saenz, Laura M Sanchez, Søren Johannes Sørensen, Margherita Sosio, Roderich D Süssmuth, Douglas Sweeney, Kapil Tahlan, Regan J Thomson, Nicholas J Tobias, Amaro E Trindade-Silva, Gilles P van Wezel, Mingxun Wang, Kelly C Weldon, Fan Zhang, Nadine Ziemert, Katherine R Duncan, Max Crüsemann, Simon Rogers, Pieter C Dorrestein, Marnix H Medema, Justin J J van der Hooft | Nature Chemical Biology | 2021-02-17 | Abstract | |
| Quantifying Live Microbial Load in Human Saliva Samples over Time Reveals Stable Composition and Dynamic Load. | Clarisse Marotz, James T Morton, Perris Navarro, Joanna Coker, Pedro Belda-Ferre, Rob Knight, Karsten Zengler | MSystems | 2021-02-16 | Abstract | |
| Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus. | St Elmo Wilken, Jonathan M Monk, Patrick A Leggieri, Christopher E Lawson, Thomas S Lankiewicz, Susanna Seppälä, Chris G Daum, Jerry Jenkins, Anna M Lipzen, Stephen J Mondo, Kerrie W Barry, Igor V Grigoriev, John K Henske, Michael K Theodorou, Bernhard O Palsson, Linda R Petzold, Michelle A O'Malley | MSystems | 2021-02-16 | Abstract | |
| Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features. | Natalya Yutin, Sean Benler, Sergei A Shmakov, Yuri I Wolf, Igor Tolstoy, Mike Rayko, Dmitry Antipov, Pavel A Pevzner, Eugene V Koonin | Nature Communications | 2021-02-16 | Abstract | |
| Tiny Earth: A Big Idea for STEM Education and Antibiotic Discovery. | Amanda Hurley, Marc G Chevrette, Deepa D Acharya, Gabriel L Lozano, Manuel Garavito, Jen Heinritz, Luis Balderrama, Mara Beebe, Martel L DenHartog, Kamiyah Corinaldi, Renee Engels, Alyssa Gutierrez, Orli Jona, Josephine H I Putnam, Brody Rhodes, Tiffany Tsang, Simon Hernandez, Carol Bascom-Slack, Jessamina E Blum, Paul A Price, Debra Davis, Joanna Klein, Joshua Pultorak, Nora L Sullivan, Nigel J Mouncey, Pieter C Dorrestein, Sarah Miller, Nichole A Broderick, Jo Handelsman | MBio | 2021-02-16 | Abstract | |
| Fungi-Bacteria Correlation in Alcoholic Hepatitis Patients. | Bei Gao, Xinlian Zhang, Bernd Schnabl | Toxins | 2021-02-14 | Abstract | |
| Seroprevalence of antibodies to SARS-CoV-2 in healthcare workers: a cross-sectional study. | Joseph E Ebinger, Gregory J Botwin, Christine M Albert, Mona Alotaibi, Moshe Arditi, Anders H Berg, Aleksandra Binek, Patrick Botting, Justyna Fert-Bober, Jane C Figueiredo, Jonathan D Grein, Wohaib Hasan, Mir Henglin, Shehnaz K Hussain, Mohit Jain, Sandy Joung, Michael Karin, Elizabeth H Kim, Dalin Li, Yunxian Liu, Eric Luong, Dermot P B McGovern, Akil Merchant, Noah Merin, Peggy B Miles, Margo Minissian, Trevor Trung Nguyen, Koen Raedschelders, Mohamad A Rashid, Celine E Riera, Richard V Riggs, Sonia Sharma, Sarah Sternbach, Nancy Sun, Warren G Tourtellotte, Jennifer E Van Eyk, Kimia Sobhani, Jonathan G Braun, Susan Cheng | BMJ Open | 2021-02-12 | Abstract | |
| Revealing Tissue-Specific SARS-CoV-2 Infection and Host Responses using Human Stem Cell-Derived Lung and Cerebral Organoids. | Shashi Kant Tiwari, Shaobo Wang, Davey Smith, Aaron F Carlin, Tariq M Rana | Stem Cell Reports | 2021-02-12 | Abstract | |
| Multipathogen Analysis of IgA and IgG Antigen Specificity for Selected Pathogens in Milk Produced by Women From Diverse Geographical Regions: The INSPIRE Study. | Michelle K McGuire, Arlo Z Randall, Antti E Seppo, Kirsi M Järvinen, Courtney L Meehan, Debela Gindola, Janet E Williams, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, James A Foster, Gloria E Otoo, Juan M Rodríguez, Rossina G Pareja, Lars Bode, Mark A McGuire, Joseph J Campo | Frontiers In Immunology | 2021-02-11 | Abstract | |
| Paresthesia Predicts Increased Risk of Distal Neuropathic Pain in Older People with HIV-Associated Sensory Polyneuropathy. | Monica M Diaz, John R Keltner, Alan N Simmons, Donald Franklin, Raeanne C Moore, David Clifford, Ann C Collier, Benjamin B Gelman, Ph D Christina Marra, J Allen McCutchan, Susan Morgello, Ned Sacktor, Brookie Best, Christine Fennema Notestine, Sara Gianella Weibel, Igor Grant, Thomas D Marcotte, Florin Vaida, Scott Letendre, Robert Heaton, Ronald J Ellis | Pain Medicine (Malden, Mass.) | 2021-02-11 | Abstract | |
| Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly. | Mahul Chakraborty, Arunachalam Ramaiah, Adriana Adolfi, Paige Halas, Bhagyashree Kaduskar, Luna Thanh Ngo, Suvratha Jayaprasad, Kiran Paul, Saurabh Whadgar, Subhashini Srinivasan, Suresh Subramani, Ethan Bier, Anthony A James, J J Emerson | BMC Biology | 2021-02-10 | Abstract | |
| IonoBiology: The functional dynamics of the intracellular metallome, with lessons from bacteria. | Leticia Galera-Laporta, Colin J Comerci, Jordi Garcia-Ojalvo, Gürol M Süel | Cell Systems | 2021-02-10 | Abstract | |
| Human Milk-Fed Piglets Have a Distinct Small Intestine and Circulatory Metabolome Profile Relative to That of Milk Formula-Fed Piglets. | Fernanda Rosa, Katelin S Matazel, Ahmed A Elolimy, Sean H Adams, Anne Bowlin, Keith D Williams, Lars Bode, Laxmi Yeruva | MSystems | 2021-02-09 | Abstract | |
| Functional Restoration of Bacteriomes and Viromes by Fecal Microbiota Transplantation. | Kosuke Fujimoto, Yasumasa Kimura, Jessica R Allegretti, Mako Yamamoto, Yao-Zhong Zhang, Kotoe Katayama, Georg Tremmel, Yunosuke Kawaguchi, Masaki Shimohigoshi, Tetsuya Hayashi, Miho Uematsu, Kiyoshi Yamaguchi, Yoichi Furukawa, Yutaka Akiyama, Rui Yamaguchi, Sheila E Crowe, Peter B Ernst, Satoru Miyano, Hiroshi Kiyono, Seiya Imoto, Satoshi Uematsu | Gastroenterology | 2021-02-09 | Abstract | |
| Emergence of an early SARS-CoV-2 epidemic in the United States. | Mark Zeller, Karthik Gangavarapu, Catelyn Anderson, Allison R Smither, John A Vanchiere, Rebecca Rose, Daniel J Snyder, Gytis Dudas, Alexander Watts, Nathaniel L Matteson, Refugio Robles-Sikisaka, Maximilian Marshall, Amy K Feehan, Gilberto Sabino-Santos, Antoinette R Bell-Kareem, Laura D Hughes, Manar Alkuzweny, Patricia Snarski, Julia Garcia-Diaz, Rona S Scott, Lilia I Melnik, Raphaälle Klitting, Michelle McGraw, Pedro Belda-Ferre, Peter DeHoff, Shashank Sathe, Clarisse Marotz, Nathan Grubaugh, David J Nolan, Arnaud C Drouin, Kaylynn J Genemaras, Karissa Chao, Sarah Topol, Emily Spencer, Laura Nicholson, Stefan Aigner, Gene W Yeo, Lauge Farnaes, Charlotte A Hobbs, Louise C Laurent, Rob Knight, Emma B Hodcroft, Kamran Khan, Dahlene N Fusco, Vaughn S Cooper, Phillipe Lemey, Lauren Gardner, Susanna L Lamers, Jeremy P Kamil, Robert F Garry, Marc A Suchard, Kristian G Andersen | MedRxiv : The Preprint Server For Health Sciences | 2021-02-08 | Abstract | |
| Whole genome sequencing identifies novel genetic mutations in patients with eczema herpeticum. | Lianghua Bin, Claire Malley, Patricia Taylor, Meher Preethi Boorgula, Sameer Chavan, Michelle Daya, Malaika Mathias, Gautam Shankar, Nicholas Rafaels, Candelaria Vergara, Joseph Potee, Monica Campbell, Jon M Hanifin, Eric Simpson, Lynda C Schneider, Richard L Gallo, Tissa Hata, Amy S Paller, Anna De Benedetto, Lisa A Beck, Peck Y Ong, Emma Guttman-Yassky, Brittany Richers, David Baraghoshi, Ingo Ruczinski, Kathleen C Barnes, Donald Y M Leung, Rasika A Mathias | Allergy | 2021-02-06 | Abstract | |
| The sum is greater than the parts: exploiting microbial communities to achieve complex functions. | Livia S Zaramela, Oriane Moyne, Manish Kumar, Cristal Zuniga, Juan D Tibocha-Bonilla, Karsten Zengler | Current Opinion In Biotechnology | 2021-02-06 | Abstract | |
| Change in Fibrosis 4 Index as Predictor of High Risk of Incident Hepatocellular Carcinoma After Eradication of Hepatitis C Virus. | Nobuharu Tamaki, Masayuki Kurosaki, Yutaka Yasui, Nami Mori, Keiji Tsuji, Chitomi Hasebe, Koji Joko, Takehiro Akahane, Koichiro Furuta, Haruhiko Kobashi, Hiroyuki Kimura, Hitoshi Yagisawa, Hiroyuki Marusawa, Masahiko Kondo, Yuji Kojima, Hideo Yoshida, Yasushi Uchida, Rohit Loomba, Namiki Izumi | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-02-05 | Abstract | |
| Building biorepositories in the midst of a pandemic. | Jennifer A Croker, Robin Patel, Kenneth S Campbell, Marietta Barton-Baxter, Shannon Wallet, Gary S Firestein, Robert P Kimberly, Olivier Elemento | Journal Of Clinical And Translational Science | 2021-02-05 | Abstract | |
| Breastfeed or be vaccinated-an unreasonable default recommendation. | Anne Merewood, Lars Bode, Riccardo Davanzo, Rafael Perez-Escamilla | Lancet (London, England) | 2021-02-04 | Abstract | |
| Current state of athalassohaline deep-sea hypersaline anoxic basin research-recommendations for future work and relevance to astrobiology. | Luke A Fisher, Alexandra Pontefract, Sanjoy M Som, Christopher E Carr, Benjamin Klempay, Britney E Schmidt, Jeff S Bowman, Douglas H Bartlett | Environmental Microbiology | 2021-02-04 | Abstract | |
| Moving Beyond the Momentum: Innovative Approaches to Clinical Trial Implementation. | Cathy Eng, Emerson Y Chen, Jane Rogers, Mark Lewis, Jonathan Strosberg, Ramya Thota, Smitha Krishnamurthi, Paul Oberstein, Rang Govindarajan, Gary Buchschacher, Sandip Patel, Davendra Sohal, Taymeyah Al-Toubah, Philip Philip, Arvind Dasari, Hagan Kennecke, Stacey Stein | JCO Oncology Practice | 2021-02-03 | Abstract | |
| Decade-scale stability and change in a marine bivalve microbiome. | Alexander T Neu, Ian V Hughes, Eric E Allen, Kaustuv Roy | Molecular Ecology | 2021-02-02 | Abstract | |
| Apurinic/Apyrimidinic Endonuclease 1 Restricts the Internalization of Bacteria Into Human Intestinal Epithelial Cells Through the Inhibition of Rac1. | Gerco den Hartog, Lindsay D Butcher, Amber L Ablack, Laura A Pace, Jailal N G Ablack, Richard Xiong, Soumita Das, Thaddeus S Stappenbeck, Lars Eckmann, Peter B Ernst, Sheila E Crowe | Frontiers In Immunology | 2021-02-02 | Abstract | |
| Independent component analysis recovers consistent regulatory signals from disparate datasets. | Anand V Sastry, Alyssa Hu, David Heckmann, Saugat Poudel, Erol Kavvas, Bernhard O Palsson | PLoS Computational Biology | 2021-02-02 | Abstract | |
| Microbiota control of maternal behavior regulates early postnatal growth of offspring. | Yujung Michelle Lee, Andre Mu, Martina Wallace, Jivani M Gengatharan, Annalee J Furst, Lars Bode, Christian M Metallo, Janelle S Ayres | Science Advances | 2021-01-29 | Abstract | |
| A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities. | Justin P Shaffer, Clarisse Marotz, Pedro Belda-Ferre, Cameron Martino, Stephen Wandro, Mehrbod Estaki, Rodolfo A Salido, Carolina S Carpenter, Livia S Zaramela, Jeremiah J Minich, MacKenzie Bryant, Karenina Sanders, Serena Fraraccio, Gail Ackermann, Gregory Humphrey, Austin D Swafford, Sandrine Miller-Montgomery, Rob Knight | BioTechniques | 2021-01-29 | Abstract | |
| Identifying COVID-19 Cases and Social Groups at High Risk of Transmission: A Strategy to Reduce Community Spread. | Robert A Gunn, John Bellettiere, Richard S Garfein, Kanya C Long, Nancy J Binkin, Cheryl A M Anderson | Public Health Reports (Washington, D.C. : 1974) | 2021-01-28 | Abstract | |
| First report on prevalence of SARS-CoV-2 infection among health-care workers in Nicaragua. | Jorge A Huete-Pérez, Cristiana Cabezas-Robelo, Lucía Páiz-Medina, Carlos A Hernández-Álvarez, Carlos Quant-Durán, James H McKerrow | PloS One | 2021-01-27 | Abstract | |
| More than a Pore: Nonlytic Antimicrobial Functions of Complement and Bacterial Strategies for Evasion. | Elisabet Bjanes, Victor Nizet | Microbiology And Molecular Biology Reviews : MMBR | 2021-01-27 | Abstract | |
| Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases. | Alison Tarke, John Sidney, Conner K Kidd, Jennifer M Dan, Sydney I Ramirez, Esther Dawen Yu, Jose Mateus, Ricardo da Silva Antunes, Erin Moore, Paul Rubiro, Nils Methot, Elizabeth Phillips, Simon Mallal, April Frazier, Stephen A Rawlings, Jason A Greenbaum, Bjoern Peters, Davey M Smith, Shane Crotty, Daniela Weiskopf, Alba Grifoni, Alessandro Sette | Cell Reports. Medicine | 2021-01-26 | Abstract | |
| Absence of CCR2 reduces spontaneous intestinal tumorigenesis in the Apc mouse model. | Venkatakrishna Rao Jala, Sobha Rani Bodduluri, Sweta Ghosh, Zinal Chheda, Rajbir Singh, Michelle E Smith, Paula M Chilton, Christopher J Fleming, Steven Paul Mathis, Rajesh Kumar Sharma, Rob Knight, Jun Yan, Bodduluri Haribabu | International Journal Of Cancer | 2021-01-26 | Abstract | |
| Pangenome Analytics Reveal Two-Component Systems as Conserved Targets in ESKAPEE Pathogens. | Akanksha Rajput, Yara Seif, Kumari Sonal Choudhary, Christopher Dalldorf, Saugat Poudel, Jonathan M Monk, Bernhard O Palsson | MSystems | 2021-01-26 | Abstract | |
| Asymmetrizing an icosahedral virus capsid by hierarchical assembly of subunits with designed asymmetry. | Zhongchao Zhao, Joseph Che-Yen Wang, Mi Zhang, Nicholas A Lyktey, Martin F Jarrold, Stephen C Jacobson, Adam Zlotnick | Nature Communications | 2021-01-26 | Abstract | |
| Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. | Jeremiah J Minich, Farhana Ali, Clarisse Marotz, Pedro Belda-Ferre, Leslie Chiang, Justin P Shaffer, Carolina S Carpenter, Daniel McDonald, Jack Gilbert, Sarah M Allard, Eric E Allen, Rob Knight, Daniel A Sweeney, Austin D Swafford | Microbiome | 2021-01-22 | Abstract | |
| Obesogenic Programming Effects during Lactation: A Narrative Review and Conceptual Model Focusing on Underlying Mechanisms and Promising Future Research Avenues. | Junilla K Larsen, Lars Bode | Nutrients | 2021-01-21 | Abstract | |
| Bacterial fitness landscapes stratify based on proteome allocation associated with discrete aero-types. | Ke Chen, Amitesh Anand, Connor Olson, Troy E Sandberg, Ye Gao, Nathan Mih, Bernhard O Palsson | PLoS Computational Biology | 2021-01-19 | Abstract | |
| Functional genomics and metabolomics advance the ethnobotany of the Samoan traditional medicine "matalafi". | Seeseei Molimau-Samasoni, Victoria Helen Woolner, Su'emalo Talie Foliga, Katharina Robichon, Vimal Patel, Sarah K Andreassend, Jeffrey P Sheridan, Tama Te Kawa, David Gresham, Darach Miller, Daniel J Sinclair, Anne C La Flamme, Alexey V Melnik, Allegra Aron, Pieter C Dorrestein, Paul H Atkinson, Robert A Keyzers, Andrew B Munkacsi | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-01-19 | Abstract | |
| Exploring the Impact of Ketodeoxynonulosonic Acid in Host-Pathogen Interactions Using Uptake and Surface Display by Nontypeable Haemophilus influenzae. | Sudeshna Saha, Alison Coady, Aniruddha Sasmal, Kunio Kawanishi, Biswa Choudhury, Hai Yu, Ricardo U Sorensen, Jaime Inostroza, Ian C Schoenhofen, Xi Chen, Anja Münster-Kühnel, Chihiro Sato, Ken Kitajima, Sanjay Ram, Victor Nizet, Ajit Varki | MBio | 2021-01-19 | Abstract | |
| Large-scale association analyses identify host factors influencing human gut microbiome composition. | Alexander Kurilshikov, Carolina Medina-Gomez, Rodrigo Bacigalupe, Djawad Radjabzadeh, Jun Wang, Ayse Demirkan, Caroline I Le Roy, Juan Antonio Raygoza Garay, Casey T Finnicum, Xingrong Liu, Daria V Zhernakova, Marc Jan Bonder, Tue H Hansen, Fabian Frost, Malte C Rühlemann, Williams Turpin, Jee-Young Moon, Han-Na Kim, Kreete Lüll, Elad Barkan, Shiraz A Shah, Myriam Fornage, Joanna Szopinska-Tokov, Zachary D Wallen, Dmitrii Borisevich, Lars Agreus, Anna Andreasson, Corinna Bang, Larbi Bedrani, Jordana T Bell, Hans Bisgaard, Michael Boehnke, Dorret I Boomsma, Robert D Burk, Annique Claringbould, Kenneth Croitoru, Gareth E Davies, Cornelia M van Duijn, Liesbeth Duijts, Gwen Falony, Jingyuan Fu, Adriaan van der Graaf, Torben Hansen, Georg Homuth, David A Hughes, Richard G Ijzerman, Matthew A Jackson, Vincent W V Jaddoe, Marie Joossens, Torben Jørgensen, Daniel Keszthelyi, Rob Knight, Markku Laakso, Matthias Laudes, Lenore J Launer, Wolfgang Lieb, Aldons J Lusis, Ad A M Masclee, Henriette A Moll, Zlatan Mujagic, Qi Qibin, Daphna Rothschild, Hocheol Shin, Søren J Sørensen, Claire J Steves, Jonathan Thorsen, Nicholas J Timpson, Raul Y Tito, Sara Vieira-Silva, Uwe Völker, Henry Völzke, Urmo Võsa, Kaitlin H Wade, Susanna Walter, Kyoko Watanabe, Stefan Weiss, Frank U Weiss, Omer Weissbrod, Harm-Jan Westra, Gonneke Willemsen, Haydeh Payami, Daisy M A E Jonkers, Alejandro Arias Vasquez, Eco J C de Geus, Katie A Meyer, Jakob Stokholm, Eran Segal, Elin Org, Cisca Wijmenga, Hyung-Lae Kim, Robert C Kaplan, Tim D Spector, Andre G Uitterlinden, Fernando Rivadeneira, Andre Franke, Markus M Lerch, Lude Franke, Serena Sanna, Mauro D'Amato, Oluf Pedersen, Andrew D Paterson, Robert Kraaij, Jeroen Raes, Alexandra Zhernakova | Nature Genetics | 2021-01-18 | Abstract | |
| Airborne Transmission of SARS-CoV-2: What We Know. | Jonathan M Samet, Kimberly Prather, Georges Benjamin, Seema Lakdawala, John-Martin Lowe, Arthur Reingold, John Volckens, Linsey Marr | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-01-18 | Abstract | |
| Microbiome Signatures in a Fast- and Slow-Progressing Gastric Cancer Murine Model and Their Contribution to Gastric Carcinogenesis. | Prerna Bali, Joanna Coker, Ivonne Lozano-Pope, Karsten Zengler, Marygorret Obonyo | Microorganisms | 2021-01-17 | Abstract | |
| Novel Models of Colonization and Disease Reveal Modest Contributions of M-Like (SCM) Protein. | Ingrid Cornax, Jacob Zulk, Joshua Olson, Marcus Fulde, Victor Nizet, Kathryn A Patras | Microorganisms | 2021-01-16 | Abstract | |
| Differential T cell reactivity to seasonal coronaviruses and SARS-CoV-2 in community and health care workers. | Ricardo da Silva Antunes, Suresh Pallikkuth, Erin Williams, Esther Dawen Yu, Jose Mateus, Lorenzo Quiambao, Eric Wang, Stephen A Rawlings, Daniel Stadlbauer, Kaijun Jiang, Fatima Amanat, David Arnold, David Andrews, Irma Fuego, Jennifer M Dan, Alba Grifoni, Daniela Weiskopf, Florian Krammer, Shane Crotty, Michael E Hoffer, Savita G Pahwa, Alessandro Sette | MedRxiv : The Preprint Server For Health Sciences | 2021-01-15 | Abstract | |
| New Developments in Microbiome in Alcohol-Associated and Nonalcoholic Fatty Liver Disease. | Phillipp Hartmann, Bernd Schnabl | Seminars In Liver Disease | 2021-01-14 | Abstract |
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