Publications

These are the LAST 12 MONTHS of publications from the CMI membership team.

To see or search all of the publications, visit the archives page.

Article	Authors	Journal	Date	Abstract	Reach
Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae.	Zoltán Füssy, Robert H Lampe, Kevin R Arrigo, Kerrie Barry, Margaret M Brisbin, Corina P D Brussaard, Johan Decelle, Colomban de Vargas, Giacomo R DiTullio, Liam D H Elbourne, Marc E Frischer, David M Goodstein, Igor V Grigoriev, Richard D Hayes, Adam L Healey, Chase C James, Jerry W Jenkins, Caroline Juery, Manish Kumar, Adam B Kustka, Florian Maumus, Anna M G Novák Vanclová, Miroslav Oborník, Ian T Paulsen, Ian Probert, Mak A Saito, Jeremy Schmutz, Tomáš Skalický, Diego Tec-Campos, Hannah Tomelka, Pavlína Věchtová, Pratap Venepally, Brendan Wilson-Mortier, Karsten Zengler, Hong Zheng, Andrew E Allen	Nature Communications	2025-09-29	Abstract
PMkbase (version 1.0): an interactive web-based tool for tracking bacterial metabolic traits using phenotype microarrays made interoperable with sequence information and visualizing/processing PM data.	K Jayanth Krishnan, Ying Hefner, Richard Szubin, Jonathan Monk, David T Pride, Bernhard Palsson	Microbiology Spectrum	2025-09-26	Abstract
A Mechanistic Framework for Repurposing FDA-Approved Drugs to Combat Antimicrobial Resistance: The Case of .	Daniel Sun, Victor Nizet	Annual Review Of Pharmacology And Toxicology	2025-09-25	Abstract
CaDAVEr: a metagenome-assembled genome catalog of microbial decomposers across vertebrate environments.	Valerie A Seitz, Bridget B McGivern, Michael Shaffer, Mikayla A Borton, Aeriel D Belk, Parsa Ghadermazi, Cameron Martino, Liat Shenhav, Anru R Zhang, Pixu Shi, Alexandra Emmons, Heather Deel, Zhenjiang Zech Xu, Victoria Nieciecki, Qiyun Zhu, Kalen Cantrell, Asa Ben-Hur, Sasha C Reed, Greg C Humphry, Gail Ackermann, Daniel McDonald, Siu Hung Joshua Chan, Melissa Connor, Derek A Boyd, Jake Smith, Jenna M S Watson, Giovanna Vidoli, Dawnie Steadman, Aaron M Lynne, Sibyl Bucheli, David O Carter, Zachary M Burcham, Rob Knight, Kelly C Wrighton, Jessica L Metcalf	Microbiology Resource Announcements	2025-09-23	Abstract
Atopic skin resists colonization by beneficial bacteria: A first-in-human analysis of the rate of elimination of topically applied bacteria.	Richard L Gallo, Teruaki Nakatsuji, Andrea Roso Mares, June Moon, Olive Osuoji, Victoria Li, Alexandra Fernandez-Desoto, Angie Wu, Michael Nodzenski, Gloria David, Amaziah Coleman, Tissa R Hata	The Journal Of Investigative Dermatology	2025-09-23	Abstract
Enhancing Antimicrobial Susceptibility Testing for Acinetobacter baumannii Using Physiologically Relevant Culture Media and Biofilm Formation Assays.	Nana Yaa P Sakyi Opoku, Arunima Mishra, Hansel Fletcher, Victor Nizet, Jacinda C Abdul-Mutakabbir	Current Protocols	2025-09-22	Abstract
Investigating Azithromycin Activity Against ESBL-Producing Escherichia coli Under Physiologically Relevant Conditions.	Sean Jung, Samira Dahesh, Elisabet Bjånes, Jonathan Monk, Natalie Chavarria, Sachiko Correa, Alexandria Hoffman, Hunter Gage, Victor Nizet, Monika Kumaraswamy	The Journal Of Infectious Diseases	2025-09-17	Abstract
Neuronal Membrane-Functionalized Biohybrid Microrobots for Active Decontamination of Neurotoxins in Aqueous Environments.	Zhengxing Li, Hao Luan, Zheng Fang, Wei-Ting Shen, Yiyan Yu, Junyi Ji, Robert Kobrin, Jiayuan Alex Zhang, Sven Neuschul, Wesley Tse, Shichao Ding, Dan Wang, Ronnie H Fang, Weiwei Gao, Liangfang Zhang, Joseph Wang	ACS Nano	2025-09-17	Abstract
The Impact of pH on Proteolytic Activity in Wound Fluid: Implications for Acid Therapy.	Elany Barbosa da Silva, Meredith J Crane, Lawrence Liu, Danielle J Gelsinger, Alexander R D Jordon, Phuong Le, Jack G Haggett, Samuel A Myers, Robin L McKinney, Craig P Eberson, Amanda M Jamieson, Anthony J O'Donoghue	The Journal Of Biological Chemistry	2025-09-15	Abstract
MSLib: efficient generation of open multi-stage fragmentation mass spectral libraries.	Corinna Brungs, Robin Schmid, Steffen Heuckeroth, Aninda Mazumdar, Matúš Drexler, Pavel Šácha, Pieter C Dorrestein, Daniel Petras, Louis-Felix Nothias, Václav Veverka, Radim Nencka, Zdeněk Kameník, Tomáš Pluskal	Nature Methods	2025-09-15	Abstract
Transient vascular occlusions in a zebrafish model of mycobacterial brain infection.	Megan I Hayes, Sumedha Ravishankar, Tariq Qayum, Victor Nizet, Cressida A Madigan	PloS One	2025-09-12	Abstract
Launching the IUCN Microbial Conservation Specialist Group as a global safeguard for microbial biodiversity.	Jack A Gilbert, Raquel S Peixoto, Amber Hartman Scholz, Maria Gloria Dominguez Bello, Lise Korsten, Gabriele Berg, Brajesh Singh, Antje Boetius, Fengping Wang, Chris Greening, Kelly Wrighton, Seth Bordenstein, Janet K Jansson, Jay T Lennon, Valeria Souza, Torsten Thomas, Don Cowan, Thomas W Crowther, Nguyen Nguyen, Lucy Harper, Louis-Patrick Haraoui, Suzanne L Ishaq, Kent Redford	Nature Microbiology	2025-09-12	Abstract
Azapeptide-Based SARS-CoV-2 Main Protease Inhibitors: Design, Synthesis, Enzyme Inhibition, Structural Determination, and Antiviral Activity.	Philipp Flury, Jyoti Vishwakarma, Katharina Sylvester, Nobuyo Higashi-Kuwata, Agnieszka K Dabrowska, Renee Delgado, Ashley Cuell, Rahul Basu, Alexander B Taylor, Ellen Gonçalves de Oliveira, Mateus Sá Magalhães Serafim, Jingxin Qiao, Yan Chen, Shengyong Yang, Anthony J O'Donoghue, Hiroaki Mitsuya, Michael Gütschow, Stefan A Laufer, Christa E Müller, Reuben S Harris, Thanigaimalai Pillaiyar	Journal Of Medicinal Chemistry	2025-09-11	Abstract
Drugs and Bugs in Atopic Dermatitis: Benefits to the Skin Microbiome from Targeted Immunotherapies.	Richard L Gallo	The Journal Of Investigative Dermatology	2025-09-10	Abstract
Extremophile hotspots linked to containerized industrial waste dumping in a deep-sea basin.	Johanna Gutleben, Sheila Podell, Kira Mizell, Douglas Sweeney, Carlos Neira, Lisa A Levin, Paul R Jensen	PNAS Nexus	2025-09-09	Abstract
Rapid Elimination of Culturable SARS-CoV-2 With Intramuscular or Intravenous Administration of Antiviral Monoclonal Antibody Therapy.	Rinki Deo, Manish C Choudhary, Owen T Glover, Rachel Bender Ignacio, Julie Boucau, Kara W Chew, Carlee Moser, Judith S Currier, Joseph J Eron, Arzhang Cyrus Javan, Mark J Giganti, Evgenia Aga, Michael Gibbs, Taylor Cohen, Katie Streicher, Karina Soboleva, Courtney V Fletcher, Eric S Daar, Alexander L Greninger, Robert W Coombs, William Fischer, Michael D Hughes, Davey Smith, David Alain Wohl, Amy K Barczak, Jonathan Z Li	Open Forum Infectious Diseases	2025-09-08	Abstract
Breaking the reproducibility barrier with standardized protocols for plant-microbiome research.	Vlastimil Novak, Peter F Andeer, Eoghan King, Jacob Calabria, Connor Fitzpatrick, Jana M Kelm, Kathrin Wippel, Suzanne M Kosina, Benjamin P Bowen, Chris Daum, Matthew Zane, Archana Yadav, Mingfei Chen, Dor Russ, Catharine A Adams, Trenton K Owens, Bradie Lee, Yezhang Ding, Zineb Sordo, Romy Chakraborty, Simon Roux, Adam M Deutschbauer, Daniela Ushizima, Karsten Zengler, Borjana Arsova, Jeffery L Dangl, Paul Schulze-Lefert, Michelle Watt, John P Vogel, Trent R Northen	PLoS Biology	2025-09-08	Abstract
Inverse Relationship Between Halophilic Growth and Cell Integrity Under Extremely Chaotropic Conditions.	Luke A Fisher, Alyson R Bovee, Jordan M McKaig, Benjamin Klempay, Alexandra Pontefract, Christopher E Carr, Britney E Schmidt, Jeff S Bowman, Douglas H Bartlett	Astrobiology	2025-09-06	Abstract
spp. Antibacterial Activity Induced by Triphenyl Tetrazolium Chloride against : Oxidative Stress Response and Metabolome Changes.	Carolina González-Marín, Camilo García-Botero, Estefanía Metaute-Molina, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein, Valeska Villegas-Escobar	ACS Chemical Biology	2025-09-04	Abstract
Culture-independent meta-pangenomics enabled by long-read metagenomics reveals associations with pediatric undernutrition.	Jeremiah J Minich, Nicholas Allsing, M Omar Din, Michael J Tisza, Kenneth Maleta, Daniel McDonald, Nolan Hartwick, Allen Mamerto, Caitriona Brennan, Lauren Hansen, Justin Shaffer, Emily R Murray, Tiffany Duong, Rob Knight, Kevin Stephenson, Mark J Manary, Todd P Michael	Cell	2025-09-03	Abstract
Platelet factor 4 modulates endothelial cell antimicrobial activity to enhance bacterial clearance and improve sepsis outcomes.	Anh T P Ngo, Weronika Ortmann, Abigail Skidmore, Hyunjun Kim, Jenna Oberg, Amrita Sarkar, Veronica Bochenek, Nate Levine, Lubica Rauova, Irina Chernysh, Zachary Martinez, Caroline Diorio, Mark Goulian, Victor Nizet, Mortimer Poncz, Kandace Gollomp	BioRxiv : The Preprint Server For Biology	2025-09-03	Abstract
Microbes without borders: uniting societies for climate action.	Jay T Lennon, Leonora S Bittleston, Quanrui Chen, Vaughn S Cooper, Julieta Fernández, Jack A Gilbert, Max M Häggblom, Lucy V Harper, Janet K Jansson, Nianzhi Jiao, Elise M Kuurstra, Raquel S Peixoto, Rino Rappuoli, Mark A Schembri, Antonio Ventosa, Diana L Vullo, Chuanlun Zhang, Nguyen K Nguyen	The ISME Journal	2025-08-28	Abstract
Structural and functional characteristics of local immune memory formation in SARS-CoV-2-infected cynomolgus macaques.	Dong-Yeon Kim, Green Kim, Taehwan Oh, YoungMin Woo, Bon-Sang Koo, Seung Ho Baek, Eun-Ha Hwang, Gukhui Min, You Jung An, Jinyoung Won, Youngjeon Lee, Kyung Seob Lim, Yujin Kim, Choong-Min Ryu, Victor Nizet, Jung Joo Hong	Clinical Immunology (Orlando, Fla.)	2025-08-27	Abstract
Prokaryotic Circadian Systems: Cyanobacteria and Beyond.	Mingxu Fang, Carrie L Partch, Andy LiWang, Susan S Golden	Annual Review Of Microbiology	2025-08-26	Abstract
Associations between gut microbiome and circulating cytokines: a cross-sectional analysis in the FINRISK 2002 population cohort.	Hassan Diab, Ville Langén, Li-Fang Yeo, Veikko Salomaa, Aki Havulinna, Leo Lahti, Katariina Pärnänen, Rob Knight, Sirpa Jalkanen, Marko Salmi, Teemu Niiranen, Joonatan Palmu	Gut Pathogens	2025-08-26	Abstract
Probiotics derived sodium benzoate improves social behavior of offspring exposed in the maternal immune activation through regulation of histone lysine benzoylation in astrocytes.	Tao Li, Junyu Chen, Kai Mi, Junwen Lei, Zidi Ning, Longya Lu, Zhan Su, Qihui Zhu, Mingyan Lin, Yichao Wang, Juan Wang, Rui Xu, Lora Khaib, Rob Knight, Zhibin Hu, Xingyin Liu	Molecular Psychiatry	2025-08-25	Abstract
The Central Importance of Vaccines to Mitigate the Threat of Antibiotic-Resistant Bacterial Pathogens.	Jiaqi Amber Zhang, Victor Nizet	Vaccines	2025-08-23	Abstract
HIV broadly neutralizing antibody precursors to the Apex epitope induced in nonhuman primates.	Krystal M Ma, Henry J Sutton, Payal P Pratap, Jon M Steichen, Diane Carnathan, James Quinn, Oleksandr Kalyuzhniy, Alessia Liguori, Sashank Agrawal, Sabyasachi Baboo, Patrick Madden, Christopher A Cottrell, Jordan R Willis, Jeong-Hyun Lee, Elise Landais, Xiaozhen Hu, Parham Ramezani-Rad, Gabriel Ozorowski, Vanessa R Lewis, Jolene K Diedrich, Xiaoya Zhou, Tasha K Altheide, Nicole Phelps, Erik Georgeson, Nushin B Alavi, Danny Lu, Saman Eskandarzadeh, Michael Kubitz, Yumiko Adachi, Tina-Marie Mullen, Murillo Silva, Mariane B Melo, Sunny Himansu, Darrell J Irvine, Dennis R Burton, John R Yates, James C Paulson, Devin Sok, Ian A Wilson, Guido Silvestri, Andrew B Ward, Shane Crotty, William R Schief	Science Immunology	2025-08-22	Abstract
Impact of Microencapsulated Benzoyl Peroxide on the Skin Microbiome and Clinical Outcomes in Rosacea: An Update on a Randomized, Double-blind, Crossover, Vehicle-controlled Clinical Trial.	Yvonne Nong, Jeffrey Sugarman, Jean Philippe York, Ofra Levy-Hacham, Dawnica Nadora, Rinat Mizrahi, Aidan Galati, Richard L Gallo, Raja K Sivamani	The Journal Of Clinical And Aesthetic Dermatology	2025-08-22	Abstract
Metabolome informs about the chemical exposome and links to brain health.	Matej Orešič, Naama Karu, Haoqi Nina Zhao, Arthur Moseley, Thomas Hankemeier, David S Wishart, Pieter C Dorrestein, Oliver Fiehn, Tuulia Hyötyläinen, Rima Kaddurah Daouk,	Environment International	2025-08-22	Abstract
Targeted Microbial Shifts and Metabolite Profiles Were Associated with Clinical Response to an Anti-Inflammatory Diet in Osteoarthritis.	Marta Sala-Climent, Kevin Bu, Roxana Coras, Martha Cedeno, Simone Zuffa, Jessica Murillo-Saich, Helena Mannochio-Russo, Celeste Allaband, Michal K Hose, Anna Quan, Soo-In Choi, Katherine Nguyen, Shahrokh Golshan, Rebecca B Blank, Tiffany Holt, Nancy E Lane, Rob Knight, Jose Scher, Pieter Dorrestein, Jose Clemente, Monica Guma	Nutrients	2025-08-22	Abstract
mAChR4 suppresses liver disease via GAP-induced antimicrobial immunity.	Cristina Llorente, Fernanda Raya Tonetti, Ryan Bruellman, Rocío Brea, Nuria Pell, Phillipp Hartmann, Luca Maccioni, Hui Han, Noemí Cabré, Junlai Liu, Alvaro Eguileor, Marcos F Fondevila, Abraham S Meijnikman, Cynthia L Hsu, Ameera Alghafri, Rongrong Zhou, Bei Gao, Yi Duan, Peng Zhang, Mark A Febbraio, Koji Taniguchi, Rodney D Newberry, Derrick E Fouts, David A Brenner, Peter Stärkel, Michael Karin, Bernd Schnabl	Nature	2025-08-20	Abstract
Cannabis Use Moderates Methamphetamine- and HIV-Related Inflammation: Evidence from Human Plasma Markers.	Jeffrey M Rogers, Victoria O Chentsova, Crystal X Wang, Maria Cecilia Garibaldi Marcondes, Mariana Cherner, Ronald J Ellis, Scott L Letendre, Robert K Heaton, Igor Grant, Jennifer E Iudicello	Viruses	2025-08-20	Abstract
Cyanobacteria Join the Kahalalide Conversation: Genome and Metabolite Evidence for Structurally Related Peptides.	Byeol Ryu, Nicole E Avalon, Marine Cuau, Jehad Almaliti, M Omar Din, Caitriona Brennan, Evgenia Glukhov, Rob Knight, Lena Gerwick, William H Gerwick	Journal Of The American Chemical Society	2025-08-19	Abstract
Loss of sialic acid side-chain -acetylation exacerbates colitis.	Yang Ji, Shubham Parashar, Yukiko Miyamoto, Saurabh Srivastava, Amanda L Lewis, Nissi Varki, Ajit Varki, Lars Eckmann	Proceedings Of The National Academy Of Sciences Of The United States Of America	2025-08-19	Abstract
Advances in artificial intelligence and precision nutrition approaches to improve maternal and child health in low resource settings.	Saurabh Mehta, Samantha L Huey, Shah Mohammad Fahim, Srishti Sinha, Kripa Rajagopalan, Tahmeed Ahmed, Rob Knight, Julia L Finkelstein	Nature Communications	2025-08-18	Abstract
Reverse Spectral Search Reimagined: A Simple but Overlooked Solution for Chimeric Spectral Annotation.	Shipei Xing, Vincent Charron-Lamoureux, Haoqi Nina Zhao, Yasin El Abiead, Mingxun Wang, Pieter C Dorrestein	Analytical Chemistry	2025-08-15	Abstract
Blood microbial DNA signature differentiates hepatocellular carcinoma from metastatic lesions.	Caitlin Guccione, Ana Carolina Dantas Machado, Fady Youssef, Isabella Angeli-Pahim, Sergio Duarte, Curtis Warren, Sawyer Farmer, Gregory Humphrey, Roland Alexander Richter, Daniel McDonald, Yuhan Weng, Adam Burgoyne, Rohit Loomba, Kit Curtius, Ali Zarrinpar, Rob Knight, Amir Zarrinpar	EGastroenterology	2025-08-14	Abstract
Recombinant proteasome provides new avenues for anti-malarial drug development.	Pavla Fajtova, Hanxiao Zhang, Liam Urich, Elany Barbosa da Silva, Cesar Hoffmann da Silva, Jehad Almaliti, Momen Al-Hindy, Evzen Boura, David A Fidock, Laura A Kirkman, Gang Lin, Matthew Bogyo, William H Gerwick, Jianhua Zhao, Anthony J O'Donoghue	BioRxiv : The Preprint Server For Biology	2025-08-14	Abstract
Geography and Host Identity Shape Intraseasonal Variation of Free-Living and Zooplankton Associated Microbial Communities in Alpine Lakes.	Christopher B Wall, Madeline G Perreault, Margaret Y Demmel, Evelyn M Diaz, Joshua H Dominguez, Jonathan B Shurin	Molecular Ecology	2025-08-12	Abstract
The mass spectrometry of microbiome-mediated metabolism of food: challenges and opportunities.	Harsha Gouda, Julius Agongo, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein	Current Opinion In Microbiology	2025-08-08	Abstract
Chronological age estimation from human microbiomes with transformer-based Robust Principal Component Analysis.	Tyler Myers, Se Jin Song, Yang Chen, Britta De Pessemier, Lora Khatib, Daniel McDonald, Shi Huang, Richard Gallo, Chris Callewaert, Aki S Havulinna, Leo Lahti, Guus Roeselers, Manolo Laiola, Sudarshan A Shetty, Scott T Kelley, Rob Knight, Andrew Bartko	Communications Biology	2025-08-06	Abstract
Systemic Availability of Human Milk Oligosaccharides in Infants and Adults: A Narrative Review.	Sabrina Schenk, Lars Bode, Stina Rikke Jensen, Yannik Bernd Schönknecht, Marie-Christine Simon	Advances In Nutrition (Bethesda, Md.)	2025-08-06	Abstract
Intronic miR-342 is a key regulator of cellular glycolysis in Foxp3+ regulatory CD4 T cells.	Rongzhen Yu, Sohee Kim, Silei Li, Wenjing Yang, Giha Kim, Li-Fan Lu, Yingzi Cong, Dongkyun Kim, Booki Min	Journal Of Immunology (Baltimore, Md. : 1950)	2025-08-06	Abstract
Longitudinal big biological data in the AI era.	Adil Mardinoglu, Hasan Turkez, Minho Shong, Vishnuvardhan Pogunulu Srinivasulu, Jens Nielsen, Bernhard O Palsson, Leroy Hood, Mathias Uhlen	Molecular Systems Biology	2025-08-05	Abstract
Pre-Pasteurization Screening Protocol Reduces Donor Human Milk Loss.	Sydney McCune, Lisa Stellwagen, Carrie L Byington, Alison Wolf, Nguyen Nguyen, Lars Bode	Breastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine	2025-08-01	Abstract
Interaction between haploinsufficiency of PTPN2 and patient microbiome promotes autoimmune arthritis in mice.	Sho Sendo, Allison J Vela, Myungja Ro, Deepan Thiruppathy, Elizabeth L Wilkinson, Zixuan Zhao, Wan-Chen Hsieh, Shen Yang, Roxana Coras, Anne-Sophie Bergot, Monica Guma, Anders Nguyen, David A McBride, Suzanne Devkota, Ranjeny Thomas, Nisarg J Shah, Mattias N D Svensson, Karsten Zengler, Stephanie M Stanford, Nunzio Bottini	Journal Of Autoimmunity	2025-07-31	Abstract
Treatment with intravenous immunoglobulin modulates coagulation- and complement-related pathways in COVID-19 patients.	Dominic McGrosso, Jessica Raygoza, Avnee J Kumar, Michael T Y Lam, Laura A Barnes, Sophia Karandashova, Alexia Perryman, Matthew Geriak, Mazen F Odish, Nicole G Coufal, Brian Lichtenstein, George Sakoulas, Angela Meier, Victor Nizet, Jorge A Masso-Silva	Frontiers In Immunology	2025-07-31	Abstract
Vaccination with an mRNA-encoded membrane-bound HIV envelope trimer induces neutralizing antibodies in animal models.	Parham Ramezani-Rad, Christopher A Cottrell, Ester Marina-Zárate, Alessia Liguori, Elise Landais, Jonathan L Torres, Amber Myers, Jeong Hyun Lee, Sabyasachi Baboo, Claudia Flynn, Katherine McKenney, Eugenia Salcedo, Xiaoya Zhou, Oleksandr Kalyuzhniy, Erik Georgeson, Nicole Phelps, Danny Lu, Saman Eskandarzadeh, Sergey Menis, Michael Kubitz, Bettina Groschel, Nushin Alavi, Abigail M Jackson, Wen-Hsin Lee, Andy S Tran, Elana Ben-Akiva, Katarzyna Kaczmarek Michaels, Jolene K Diedrich, Chiamaka A Enemuo, Vanessa Lewis, Arpan Pradhan, Sudhir Pai Kasturi, Torben Schiffner, Jon M Steichen, Diane G Carnathan, Sunny Himansu, John R Yates, James C Paulson, Gabriel Ozorowski, Darrell J Irvine, Guido Silvestri, Devin Sok, Andrew B Ward, Shane Crotty, William R Schief	Science Translational Medicine	2025-07-30	Abstract
Gynecologic Oncology Patients have Urobiomes that are Similar to Women Without Gynecologic Cancer.	Anisa Nasse, Abigail Winder, Melline Fontes Noronha, Margaret R Liotta, Ronald K Potkul, Elizabeth R Mueller, Linda Brubaker, Alan J Wolfe	International Urogynecology Journal	2025-07-29	Abstract
Genotype and microbiome shape immunity in a sex-specific manner in mouse models of Alzheimer's disease.	John W Bostick, T Jaymie Connerly, Taren Thron, Brittany D Needham, Matheus de Castro Fonseca, Rima Kaddurah-Daouk, Rob Knight, Sarkis K Mazmanian	Brain, Behavior, And Immunity	2025-07-28	Abstract
Microbiota and kidney disease: the road ahead.	Patricia P Bloom, Wendy S Garrett, Kristina L Penniston, Mari-Karoliina H Winkler, Stanley L Hazen, Jose Agudelo, Mangesh Suryavanshi, Ahmed Babiker, Dylan Dodd, Michael A Fischbach, Kerwyn Casey Huang, Curtis Huttenhower, Bina Joe, Kamyar Kalantar-Zadeh, Rob Knight, Aaron W Miller, Hamid Rabb, Anvesha Srivastava, W H Wilson Tang, Peter J Turnbaugh, Alan W Walker, Nicola Wilck, Jiaojiao Xu, Tao Yang, Jonathan Himmelfarb, Matthew R Redinbo, Gary D Wu, Michael H Woodworth, A Lenore Ackerman, Sebastian Winter, Markus M Rinschen, Hatim A Hassan, Annabel Biruete, Amanda H Anderson, Jennifer L Pluznick	Nature Reviews. Nephrology	2025-07-28	Abstract
Real-time, multi-pathogen wastewater genomic surveillance with Freyja 2.	Joshua I Levy, Praneeth Gangavarapu, Dylan A Pilz, Maryam Ahmadi Jesvaghane, Allison Steedman, Mark Zeller, Karthik Gangavarapu, Daniel McDonald, Kevin Libuit, Curtis Kapsak, Erin L Young, Shelesh Agrawal, Laura Orschler, Martin Hölzer, Elyse Stachler, Daniel J Park, Angie S Hinrichs, Louise C Laurent, Rob Knight, Kristian G Andersen	MedRxiv : The Preprint Server For Health Sciences	2025-07-27	Abstract
STING-adjuvanted outer membrane vesicle nanoparticle vaccine against Pseudomonas aeruginosa.	Elisabet Bjånes, Nishta Krishnan, Truman Koh, Anh Tp Ngo, Jason Cole, Joshua Olson, Ingrid Cornax, Chih-Ho Chen, Natalie Chavarria, Samira Dahesh, Shawn M Hannah, Alexandra Stream, Jiaqi Amber Zhang, Hervé Besançon, Daniel Sun, Siri Yendluri, Sydney Morrill, Jiarong Zhou, Animesh Mohapatra, Ronnie H Fang, Victor Nizet	JCI Insight	2025-07-24	Abstract
Microbial production of creatine using growth-coupled selection systems.	Jinbei Li, Simon R Krarup, Pascal Pieters, Tobias B Alter, Paul Jacottin, Josefin Johnsen, Elsayed T Mohamed, Thomas Harris, Linda Ahonen, Khem Bahadur Adhikari, Bernhard O Palsson, Adam M Feist, Lei Yang	Metabolic Engineering	2025-07-23	Abstract
Driving a protective allele of the mosquito FREP1 gene to combat malaria.	Zhiqian Li, Yuemei Dong, Lang You, Rodrigo M Corder, Jemariz Arzobal, Audrey Yeun, Lei Yang, John M Marshall, George Dimopoulos, Ethan Bier	Nature	2025-07-23	Abstract
Substrate profiling of marine-derived thermotolerant cysteine protease reveals unique cleavage preferences for industrial applications.	Victoria Røyseth, Brianna M Hurysz, Hasan Arsın, Julia M Vazquez, Anna-Karina Kaczorowska, Anita-Elin Fedøy, Daria Biernacka, Sebastian Dorawa, Tadeusz Kaczorowski, Runar Stokke, Anthony J O'Donoghue, Ida Helene Steen	Scientific Reports	2025-07-21	Abstract
Discovery and characterization of vertebrate sialoglycan-binding proteins.	Liran Adler, Sharon Yehuda, Ajit Varki, Vered Padler-Karavani	Seminars In Immunology	2025-07-18	Abstract
Integrative genomic reconstruction reveals heterogeneity in carbohydrate utilization across human gut bifidobacteria.	Aleksandr A Arzamasov, Dmitry A Rodionov, Matthew C Hibberd, Janaki L Guruge, James E Kent, Marat D Kazanov, Semen A Leyn, Marinela L Elane, Kristija Sejane, Annalee Furst, Lars Bode, Michael J Barratt, Jeffrey I Gordon, Andrei L Osterman	Nature Microbiology	2025-07-16	Abstract
Unveiling organ-specific metabolism of .	Anurag Passi, Diego Tec-Campos, Manish Kumar, Juan D Tibocha-Bonilla, Cristal Zuñiga, Beth Peacock, Amanda Hale, Rodrigo Santibáñez-Palominos, James Borneman, Karsten Zengler	Proceedings Of The National Academy Of Sciences Of The United States Of America	2025-07-16	Abstract
Psychiatric disorders converge on common pathways but diverge in cellular context, spatial distribution, and directionality of genetic effects.	Worrawat Engchuan, Omar Shanta, Kuldeep Kumar, Jeffrey R MacDonald, Bhooma Thiruvahindrapuram, Omar Hamdan, Marieke Klein, Adam Maihofer, James Guevara, Oanh Hong, Guillaume Huguet, Molly Sacks, Mohammad Ahangari, Rayssa M M W Feitosa, Kara Han, Marla Mendes, Xiaopu Zhou, Nelson X Bautista, Giovanna Pellecchia, Zhouzhi Wang, Daniele Merico, Ryan K C Yuen, Brett Trost, Ida Sønderby, Mark J Adams, Rolf Adolfsson, Ingrid Agartz, Allison E Aiello, Martin Alda, Judith Allardyce, Ananda B Amstadter, Till F M Andlauer, Ole A Andreassen, María S Artigas, S Bryn Austin, Muhammad Ayub, Dewleen G Baker, Nick Bass, Bernhard T Baune, Maximilian Bayas, Klaus Berger, Joanna M Biernacka, Tim Bigdeli, Jonathan I Bisson, Douglas Blackwood, Marco Boks, David Braff, Elvira Bramon, Gerome Breen, Tanja Brueckl, Richard A Bryant, Cynthia M Bulik, Joseph Buxbaum, Murray J Cairns, Jose M Caldas-de-Almeida, Megan Campbell, Dominique Campion, Vaughan J Carr, Enrique Castelao, Boris Chaumette, Sven Cichon, David Cohen, Aiden Corvin, Nicholas Craddock, Jennifer Crosbie, Darrina Czamara, Udo Dannlowski, Franziska Degenhardt, Douglas L Delahanty, Astrid Dempfle, Guillaume Desachy, Arianna Di Florio, Faith B Dickerson, Srdjan Djurovic, Katharina Domschke, Lisa Douglas, Ole K Drange, Laramie E Duncan, Howard J Edenberg, Tonu Esko, Steve Faraone, Norah C Feeny, Andreas J Forstner, Barbara Franke, Mark Frye, Dong-Jing Fu, Janice M Fullerton, Anna Gareeva, Linda Garvert, Justine M Gatt, Pablo Gejman, Daniel H Geschwind, Ina Giegling, Stephen J Glatt, Joe Glessner, Fernando S Goes, Katherine Gordon-Smith, Hans Grabe, Melissa J Green, Michael F Green, Tiffany Greenwood, Maria Grigoroiu-Serbanescu, Raquel E Gur, Ruben C Gur, Jose Guzman-Parra, Jan Haavik, Tim Hahn, Hakon Hakonarson, Joachim Hallmayer, Marian L Hamshere, Annette M Hartmann, Arsalan Hassan, Caroline Hayward, Johannes Hebebrand, Sian M J Hemmings, Stefan Herms, Marisol Herrera-Rivero, Anke Hinney, Georg Homuth, Andrés Ingason, Lucas T Ito, Nakao Iwata, Ian Jones, Lisa A Jones, Lina Jonsson, Erik G Jönsson, René S Kahn, Robert Karlsson, Milissa L Kaufman, John R Kelsoe, James L Kennedy, Anthony King, Tilo Kircher, George Kirov, Per Knappskog, James A Knowles, Nene Kobayashi, Karestan C Koenen, Bettina Konte, Mayuresh Korgaonkar, Kaarina Kowalec, Marie-Odile Krebs, Mikael Landén, Claudine Laurent-Levinson, Lauren A Lebois, Doug Levinson, Cathryn Lewis, Qingqin Li, Israel Liberzon, Greg Light, Sandra K Loo, Yi Lu, Susanne Lucae, Charles Marmar, Nicholas G Martin, Fermin Mayoral, Andrew M McIntosh, Katie A McLaughlin, Samuel A McLean, Andrew McQuillin, Sarah E Medland, Andreas Meyer-Lindenberg, Vihra Milanova, Philip B Mitchell, Esther Molina, Bryan Mowry, Bertram Muller-Myhsok, Niamh Mullins, Robin Murray, Markus M Nöthen, John I Nurnberger, Kevin S O'Connell, Roel A Ophoff, Holly K Orcutt, Michael J Owen, Aarno Palotie, Carlos Pato, Michele Pato, Joanna Pawlak, Triinu Peters, Tracey L Petryshen, Giorgio Pistis, James B Potash, John Powell, Martin Preisig, Digby Quested, Josep A Ramos-Quiroga, Andreas Reif, Kerry J Ressler, Marta Ribasés, Marcella Rietschel, Victoria B Risbrough, Margarita Rivera, Alex O Rothbaum, Barbara O Rothbaum, Dan Rujescu, Takeo Saito, Alan R Sanders, Russell J Schachar, Peter R Schofield, Eva C Schulte, Thomas G Schulze, Laura J Scott, Soraya Seedat, Christina Sheerin, Jianxin Shi, Pamela Sklar, Susan Smalley, Olav B Smeland, Jordan W Smoller, Edmund Sonuga-Barke, David St Clair, Nils Eiel Steen, Dan Stein, Frederike Stein, Murray B Stein, Fabian Streit, Neal Swerdlow, Florence Thibaut, Johan H Thygesen, Ilgiz Timerbulatov, Claudio Toma, Edward Trapido, Micheline Tremblay, Ming T Tsuang, Monica Uddin, Marquis P Vawter, John B Vincent, Henry Völzke, James T Walters, Cynthia S Weickert, Lauren A Weiss, Myrna M Weissman, Thomas Werge, Stephanie H Witt, Miguel Xavier, Robert Yolken, Ross M Young, Tetyana Zayats, Lori A Zoellner, , , , , , , , Kimberley Kendall, Brien Riley, Naomi R Wray, Michael C O'Donovan, Patrick F Sullivan, Sandra Sanchez-Roige, Caroline M Nievergelt, Sébastien Jacquemont, Stephen W Scherer, Jonathan Sebat	MedRxiv : The Preprint Server For Health Sciences	2025-07-16	Abstract
PgtE protease enables virulent to evade C3-mediated serum and neutrophil killing.	Michael H Lee, Araceli Perez-Lopez, Leigh A Knodler, Grace Nguyen, Gregory T Walker, Judith Behnsen, Steven Silva, Jean Celli, Melissa A Tamin, Michael H Liang, Karine Melchior, Felix A Argueta, Sean-Paul Nuccio, Manuela Raffatellu	MBio	2025-07-14	Abstract
Epigenetic silencing of interleukin-10 by host-derived oxidized phospholipids supports a lethal inflammatory response to infections.	Marco Di Gioia, Valentina Poli, Piao J Tan, Roberto Spreafico, Anne Chu, Alex G Cuenca, Zhongyang Wu, Mehdi Benamar, Laura Pandolfi, Federica Meloni, Fatemeh Askarian, Jason Hsiao, Elizaveata Borroum, Victor Nizet, Philip L S M Gordts, Joseph L Witztum, Talal A Chatila, Janet Chou, Xu Zhou, James R Springstead, Ivan Zanoni	Immunity	2025-07-12	Abstract
Picoeukaryote-based biohybrid microrobots for active delivery in the kidney.	Zhengxing Li, Dan Wang, Hao Luan, An-Yi Chang, Zheng Fang, Lei Sun, Junyi Ji, Wei-Ting Shen, Yiyan Yu, Yiyang Yan, Shichao Ding, Jiayuan Alex Zhang, Yichen Zhang, Yifei Peng, Ronnie H Fang, Weiwei Gao, Liangfang Zhang, Joseph Wang	Science Advances	2025-07-11	Abstract
The mevalonate pathway of isoprenoid biosynthesis supports metabolic flexibility in .	Christine M Qabar, Edward E K Baidoo, Emine Akyuz Turumtay, Tariq M Qayum, Jay D Keasling, Cressida A Madigan, Daniel A Portnoy, Jeffery S Cox	BioRxiv : The Preprint Server For Biology	2025-07-11	Abstract
Metagenomic Identification of Brominated Indole Biosynthetic Machinery from Cyanobacteria.	Sanjoy Adak, Alexander B Chase, Anna E Skrip, Bradley S Moore, April L Lukowski	Journal Of Natural Products	2025-07-10	Abstract
Overturning circulation structures the microbial functional seascape of the South Pacific.	Bethany C Kolody, Rohan Sachdeva, Hong Zheng, Zoltán Füssy, Eunice Tsang, Rolf E Sonnerup, Sarah G Purkey, Eric E Allen, Jillian F Banfield, Andrew E Allen	Science (New York, N.Y.)	2025-07-10	Abstract
Self-reported everyday functioning among adults with human immunodeficiency virus: Longitudinal associations with global neurocognitive functioning and depressive symptoms.	Maximo R Prescott, Emily W Paolillo, Carlos D Rivera Saldana, Donald Franklin, Elizabeth C Pasipanodya, Mariam A Hussain, Raeanne C Moore, Robert K Heaton, Jessica L Montoya, David J Moore,	Journal Of The International Neuropsychological Society : JINS	2025-07-07	Abstract
Current state of microbiota clinical applications in neonatal and pediatric bacterial infections.	Thanh Thien Le, Tram Ngoc Hoang, Dylan Huy Do, Xuan-Hung Nguyen, Cynthia Huynh, Hang Dao Viet, Vu Quoc Dat, Karsten Zengler, Jack A Gilbert, Sean N Avedissian, Tri Minh Tran, Jennifer Le	Gut Microbes	2025-07-06	Abstract
HIV Integration into the PTEN Gene and Its Tumor Microenvironment Implications for Lung Cancer.	Davey M Smith, Elizabeth F Rowland, Sara Gianella, Sandip Pravin Patel, Stephanie Solso, Cheryl Dullano, Robert Deiss, Daria Wells, Caroline Ignacio, Gemma Caballero, Magali Porrachia, Collin Kieffer, Antoine Chaillon	Current Oncology (Toronto, Ont.)	2025-07-04	Abstract
Group B Streptococci lyse endothelial cells to infect the brain in a zebrafish meningitis model.	Sumedha Ravishankar, Samantha M Tuohey, Nicole O Ramos, Satoshi Uchiyama, Megan I Hayes, Kalisa Kang, Victor Nizet, Cressida A Madigan	PLoS Biology	2025-07-03	Abstract
Variation and prognostic potential of the gut antibiotic resistome in the FINRISK 2002 cohort.	Katariina Pärnänen, Matti O Ruuskanen, Guilhem Sommeria-Klein, Ville Laitinen, Pyry Kantanen, Guillaume Méric, Camila Gazolla Volpiano, Michael Inouye, Rob Knight, Veikko Salomaa, Aki S Havulinna, Teemu Niiranen, Leo Lahti	Nature Communications	2025-07-01	Abstract
A three-country analysis of the gut microbiome indicates taxon associations with diet vary by taxon resolution and population.	Lora Khatib, Se Jin Song, Amanda H Dilmore, Jon G Sanders, Caitriona Brennan, Alejandra Rios Hernandez, Tyler Myers, Renee Oles, Sawyer Farmer, Charles Cowart, Amanda Birmingham, Edgar A Diaz, Oliver Nizet, Kat Gilbert, Nicole Litwin, Promi Das, Brent Nowinski, Mackenzie Bryant, Caitlin Tribelhorn, Karenina Sanders-Bodai, Soline Chaumont, Jan Knol, Guus Roeselers, Manolo Laiola, Sudarshan A Shetty, Patrick Veiga, Julien Tap, Muriel Derrien, Hana Koutnikova, Aurélie Cotillard, Christophe Lay, Armando R Tovar, Nimbe Torres, Liliana Arteaga, Antonio González, Daniel McDonald, Andrew Bartko, Rob Knight	MSystems	2025-06-30	Abstract
The microbiota vault initiative: safeguarding Earth's microbial heritage for future generations.	Maria G Dominguez-Bello, Dominik Steiger, Manuel Fankhauser, Adrian Egli, Pascale Vonaesch, Nicholas A Bokulich, Anton Lavrinienko, Christian Hoffmann, Petra Zimmermann, Abdifatah Muhummed, Somphou Sayasone, Amma Larbi, Segla Wilfrid Padonou, Jakob Zinsstag, Rea Tschopp, Chalat Santivarangkna, Diana Albertos Torres, Yuen Yi Li, Vanni Benvenga, Youzheng Teo, Marcel Houngbédji, Alex Kwarteng, Rob Knight, Jack A Gilbert, Martin J Blaser	Nature Communications	2025-06-27	Abstract
Evolution of SARS-CoV-2 T cell responses as a function of multiple COVID-19 boosters.	Ricardo da Silva Antunes, Vicente Fajardo-Rosas, Esther Dawen Yu, Rosa Isela Gálvez, Adam Abawi, E Alexandar Escarrega, Amparo Martínez-Pérez, Emil Johansson, Benjamin Goodwin, April Frazier, Jennifer M Dan, Shane Crotty, Grégory Seumois, Daniela Weiskopf, Pandurangan Vijayanand, Alessandro Sette	Cell Reports	2025-06-26	Abstract
Pathway-Specific Polygenic Scores for Predicting Clinical Lithium Treatment Response in Patients With Bipolar Disorder.	Nigussie T Sharew, Scott R Clark, Sergi Papiol, Urs Heilbronner, Franziska Degenhardt, Janice M Fullerton, Liping Hou, Tatyana Shekhtman, Mazda Adli, Nirmala Akula, Kazufumi Akiyama, Raffaella Ardau, Bárbara Arias, Roland Hasler, Hélène Richard-Lepouriel, Nader Perroud, Lena Backlund, Abesh Kumar Bhattacharjee, Frank Bellivier, Antonio Benabarre, Susanne Bengesser, Joanna M Biernacka, Armin Birner, Cynthia Marie-Claire, Pablo Cervantes, Hsi-Chung Chen, Caterina Chillotti, Sven Cichon, Cristiana Cruceanu, Piotr M Czerski, Nina Dalkner, Maria Del Zompo, J Raymond DePaulo, Bruno Étain, Stephane Jamain, Peter Falkai, Andreas J Forstner, Louise Frisen, Mark A Frye, Sébastien Gard, Julie S Garnham, Fernando S Goes, Maria Grigoroiu-Serbanescu, Andreas J Fallgatter, Sophia Stegmaier, Thomas Ethofer, Silvia Biere, Kristiyana Petrova, Ceylan Schuster, Kristina Adorjan, Monika Budde, Maria Heilbronner, Janos L Kalman, Mojtaba Oraki Kohshour, Daniela Reich-Erkelenz, Sabrina K Schaupp, Eva C Schulte, Fanny Senner, Thomas Vogl, Ion-George Anghelescu, Volker Arolt, Udo Dannlowski, Detlef E Dietrich, Christian Figge, Markus Jäger, Fabian U Lang, Georg Juckel, Carsten Konrad, Jens Reimer, Max Schmauß, Andrea Schmitt, Carsten Spitzer, Martin von Hagen, Jens Wiltfang, Jörg Zimmermann, Till F M Andlauer, Andre Fischer, Felix Bermpohl, Philipp Ritter, Silke Matura, Anna Gryaznova, Irina Falkenberg, Cüneyt Yildiz, Tilo Kircher, Julia Schmidt, Marius Koch, Kathrin Gade, Sarah Trost, Ida S Haussleiter, Martin Lambert, Anja C Rohenkohl, Vivien Kraft, Paul Grof, Ryota Hashimoto, Joanna Hauser, Stefan Herms, Per Hoffmann, Esther Jiménez, Jean-Pierre Kahn, Layla Kassem, Po-Hsiu Kuo, Tadafumi Kato, John Kelsoe, Sarah Kittel-Schneider, Ewa Ferensztajn-Rochowiak, Barbara König, Ichiro Kusumi, Gonzalo Laje, Mikael Landén, Catharina Lavebratt, Marion Leboyer, Susan G Leckband, Alfonso Tortorella, Mirko Manchia, Lina Martinsson, Michael J McCarthy, Susan McElroy, Francesc Colom, Vincent Millischer, Marina Mitjans, Francis M Mondimore, Palmiero Monteleone, Caroline M Nievergelt, Markus M Nöthen, Tomas Novák, Claire O'Donovan, Norio Ozaki, Andrea Pfennig, Claudia Pisanu, James B Potash, Andreas Reif, Eva Reininghaus, Guy A Rouleau, Janusz K Rybakowski, Martin Schalling, Peter R Schofield, Barbara W Schweizer, Giovanni Severino, Paul D Shilling, Katzutaka Shimoda, Christian Simhandl, Claire M Slaney, Alessio Squassina, Thomas Stamm, Pavla Stopkova, Mario Maj, Gustavo Turecki, Eduard Vieta, Julia Veeh, Biju Viswanath, Stephanie H Witt, Adam Wright, Peter P Zandi, Philip B Mitchell, Michael Bauer, Martin Alda, Marcella Rietschel, Francis J McMahon, Thomas G Schulze, Bernhard T Baune, Klaus Oliver Schubert, Azmeraw T Amare	Biological Psychiatry Global Open Science	2025-06-25	Abstract
Guidelines for preventing and reporting contamination in low-biomass microbiome studies.	Noah Fierer, Pok Man Leung, Rachael Lappan, Raphael Eisenhofer, Francesco Ricci, Sophie I Holland, Nicholas Dragone, Linda L Blackall, Xiyang Dong, Cristina Dorador, Belinda C Ferrari, Jacqueline Goordial, Susan P Holmes, Fumio Inagaki, Tal Korem, Simone S Li, Thulani P Makhalanyane, Jessica L Metcalf, Niranjan Nagarajan, William D Orsi, Erin R Shanahan, Alan W Walker, Laura S Weyrich, Jack A Gilbert, Amy D Willis, Benjamin J Callahan, Ashley Shade, Julian Parkhill, Jillian F Banfield, Chris Greening	Nature Microbiology	2025-06-20	Abstract
Functional Genomics and Structural Insights into Maize Aldo-Keto Reductase-4 Family: Stress Metabolism and Substrate Specificity in Embryos.	Sylvia Morais de Sousa, Priscila Oliveira de Giuseppe, Mario Tyago Murakami, Jiahn-Chou Guan, Jonathan W Saunders, Eduardo Kiyota, Marcelo Leite Santos, Eric A Schmelz, Jose Andres Yunes, Karen E Koch	The Journal Of Biological Chemistry	2025-06-20	Abstract
Untargeted and semi-targeted metabolomics approach for profiling small intestinal and fecal metabolome using high-resolution mass spectrometry.	Alexandre Tronel, Morgane Roger-Margueritat, Caroline Plazy, Valérie Cunin, Ipsita Mohanty, Pieter C Dorrestein, Thomas Soranzo, Audrey Le Gouellec	Metabolomics : Official Journal Of The Metabolomic Society	2025-06-19	Abstract
Clock-Dependent Phosphorylation of CikA Regulates Its Activity.	Cigdem Sancar, Susan S Golden	Journal Of Biological Rhythms	2025-06-19	Abstract
Host traits and environmental variation shape gut microbiota diversity in wild threespine stickleback.	Andreas Härer, Emma Kurstjens, Diana J Rennison	Animal Microbiome	2025-06-18	Abstract
Metatranscriptomics Uncover Diurnal Functional Shifts in Bacterial Transgenes with Profound Metabolic Effects.	Stephany Flores Ramos, Nicole Siguenza, Wuling Zhong, Ipsita Mohanty, Amulya Lingaraju, R Alexander Richter, Smruthi Karthikeyan, April L Lukowski, Qiyun Zhu, Wilhan D G Nunes, Jasmine Zemlin, Zhenjiang Zech Xu, Jeff Hasty, Pieter C Dorrestein, Satchidananda Panda, Rob Knight, Amir Zarrinpar	Cell Host & Microbe	2025-06-18	Abstract
CRISPRi screening reveals 's anaerobic-like respiratory adaptations to gentamicin: membrane depolarization by CpxR.	Donghui Choe, Eunju Lee, Yoseb Song, Sun Chang Kim, Ki Jun Jeong, Bernhard Palsson, Byung-Kwan Cho, Suhyung Cho	MSystems	2025-06-16	Abstract
Optimizing mouse metatranscriptome profiling by selective removal of redundant nucleic acid sequences.	Morgan Roos, Samuel Bunga, Asako Tan, Erica Maissy, Dylan Skola, Alexander Richter, Daniel S Whittaker, Paula Desplats, Amir Zarrinpar, Rick Conrad, Scott Kuersten	MSystems	2025-06-16	Abstract
Microenvironmental Effects of a Non-Antibiotic Therapy for a Chronic Polymicrobial Infection Alter Microbial Physiology, Competition, and Virulence.	Cely T González, Christian Martin, Maddey Crane, Karen Gutierrez, Jacob Thomas, Lacy Remisoski, Maxwell Okros, Yousi Fu, Douglas V Guzior, Dustin Finkhouse, Christopher Bridges, Jenna Mielke, Gabriel Querido, Lienwil Padillo, Reda Girgis, Marc McClelland, Douglas Conrad, Xiaopeng Li, Robert A Quinn	The ISME Journal	2025-06-14	Abstract
Murine maternal microbiome modifies adverse effects of protein undernutrition on offspring neurobehaviour.	Elena J Coley-O'Rourke, Gregory R Lum, Geoffrey N Pronovost, Lewis W Yu, Ezgi Özcan, Kristie B Yu, Janet McDermott, Anna Chakhoyan, Eliza Goldman, Helen E Vuong, Jorge Paramo, Sydney McCune, Kristija Sejane, Simone Renwick, Lars Bode, Alison Chu, Kara L Calkins, Elaine Y Hsiao	Nature Microbiology	2025-06-13	Abstract
Isolation of Verrucosins A-E from a Marine sp. Reveals a Unifying Biosynthetic Hypothesis for Linear and Macrocyclic Polyketides.	Darren C Holland, Reiko Iizumi, Vikram V Shende, William Fenical	Journal Of Natural Products	2025-06-13	Abstract
The oral microbiome and all-cause mortality in aUS population representative prospective cohort.	Emily Vogtmann, Yukiko Yano, Jianxin Shi, Yunhu Wan, Vaishnavi Purandare, Jody McLean, Shilan Li, Rob Knight, Lisa Kahle, Autumn G Hullings, Xing Hua, Barry I Graubard, Maura L Gillison, J Gregory Caporaso, Nicholas A Bokulich, Martin J Blaser, Neal D Freedman, Anil K Chaturvedi, Christian C Abnet	The Journal Of Infectious Diseases	2025-06-13	Abstract
A widespread metabolic gene cluster family in metazoans.	Natalie E Grayson, Paul D Scesa, Malia L Moore, Jean-Baptiste Ledoux, Jessica Gomez-Garrido, Tyler Alioto, Todd P Michael, Immo Burkhardt, Eric W Schmidt, Bradley S Moore	Nature Chemical Biology	2025-06-13	Abstract
Human milk oligosaccharides and Campylobacter jejuni and Campylobacter coli gastroenteritis risk in a Nicaraguan birth cohort.	Rebecca J Rubinstein, Roberto Herrera, Nadja A Vielot, Christian Toval, Lester Gutiérrez, Yaoska Reyes, Patricia Blandón, Natalie M Bowman, Esteban Chaves-Olarte, Filemón Bucardo, Robert S Sandler, Jessie Edwards, Lars Bode, Sylvia Becker-Dreps, Samuel Vilchez	The American Journal Of Clinical Nutrition	2025-06-12	Abstract
Global siRNA screen identifies human host factors critical for SARS-CoV-2 replication and late stages of infection.	Xin Yin, Yuan Pu, Shuofeng Yuan, Lars Pache, Christopher Churas, Stuart Weston, Laura Riva, Lacy M Simons, William J Cisneros, Thomas Clausen, Grace Biddle, Simon Doss-Gollin, Meagan Deming, Paul D De Jesus, Ha Na Kim, Daniel Fuentes, John M Whitelock, Jeffrey D Esko, Megan S Lord, Ignacio Mena, Adolfo García-Sastre, Judd F Hultquist, Matthew B Frieman, Trey Ideker, Dexter Pratt, Laura Martin-Sancho, Sumit K Chanda	PLoS Biology	2025-06-12	Abstract
The Extraordinary Benefit of Nature's Chemistry to Health, Society, and the Economy.	Bradley S Moore, David J Newman	Journal Of Natural Products	2025-06-12	Abstract
Exploration of virulence and immune evasion functions of the candidate vaccine antigen SpyAD in the globally disseminated M1T1 group A strain.	Alexandra Stream, Samira Dahesh, Lamar Thomas, Nina J Gao, Elisabet Bjånes, Kalisa Kang, Truman Koh, Neeraj Kapoor, Victor Nizet	MBio	2025-06-11	Abstract
Microbiota in Alcohol-Associated Organ Damage.	Aenne Harberts, Bernd Schnabl	The American Journal Of Pathology	2025-06-11	Abstract
Protocol: the International Milk Composition (IMiC) Consortium - a harmonized secondary analysis of human milk from four studies.	Kelsey Fehr, Andrew Mertens, Chi-Hung Shu, Trenton Dailey-Chwalibóg, Liat Shenhav, Lindsay H Allen, Megan R Beggs, Lars Bode, Rishma Chooniedass, Mark D DeBoer, Lishi Deng, Camilo Espinosa, Daniela Hampel, April Jahual, Fyezah Jehan, Mohit Jain, Patrick Kolsteren, Puja Kawle, Kim A Lagerborg, Melissa B Manus, Samson Mataraso, Joann M McDermid, Ameer Muhammad, Payam Peymani, Martin Pham, Setareh Shahab-Ferdows, Yasir Shafiq, Vishak Subramoney, Daniel Sunko, Laeticia Celine Toe, Stuart E Turvey, Lei Xue, Natalie Rodriguez, Alan Hubbard, Nima Aghaeepour, Meghan B Azad	Frontiers In Nutrition	2025-06-10	Abstract
Temporal single-cell sequencing analysis reveals that GPNMB-expressing macrophages potentiate muscle regeneration.	Yu-Fan Chen, Chien-Wei Lee, Yi-Shuan J Li, Wei-Ting Lin, Hsiao-Yun Chen, Yu-Chuan Chen, Chia-Hao Lin, Jennifer Hui-Chun Ho, Li-Fan Lu, Shu Chien, Oscar Kuang-Sheng Lee	Experimental & Molecular Medicine	2025-06-09	Abstract
The microbiome diversifies long- to short-chain fatty acid-derived N-acyl lipids.	Helena Mannochio-Russo, Vincent Charron-Lamoureux, Martijn van Faassen, Santosh Lamichhane, Wilhan D Gonçalves Nunes, Victoria Deleray, Adriana V Ayala, Yuichiro Tanaka, Abubaker Patan, Kyle Vittali, Prajit Rajkumar, Yasin El Abiead, Haoqi Nina Zhao, Paulo Wender Portal Gomes, Ipsita Mohanty, Carlynda Lee, Aidan Sund, Meera Sharma, Yuanhao Liu, David Pattynama, Gregory T Walker, Grant J Norton, Lora Khatib, Mohammadsobhan S Andalibi, Crystal X Wang, Ronald J Ellis, David J Moore, Jennifer E Iudicello, Donald Franklin, Scott Letendre, Loryn Chin, Corinn Walker, Simone Renwick, Jasmine Zemlin, Michael J Meehan, Xinyang Song, Dennis Kasper, Zachary Burcham, Jane J Kim, Sejal Kadakia, Manuela Raffatellu, Lars Bode, Hiutung Chu, Karsten Zengler, Mingxun Wang, Dionicio Siegel, Rob Knight, Pieter C Dorrestein	Cell	2025-06-09	Abstract
Real-world impact of COVID-19 vaccination, household exposure, and circulating SARS-CoV-2 variants on infection risk and symptom presentation in a U.S./Mexico border community.	Ariel Cohen, Breanna Reyes, Maria Linda Burola, Angel Lomeli, Arleth A Escoto, Linda Salgin, Borsika A Rabin, Nicole A Stadnick, Ilya Zaslavsky, Robert Tukey, Louise C Laurent, Marva Seifert	Frontiers In Public Health	2025-06-09	Abstract
Tropical cyclones drive oxygen minimum zone shoaling and simultaneously alter organic matter production.	Brandon M Genco, Margot E White, Irina Koester, Sonia M Vargas, Jaclyn K Saunders, Daniel Petras, Mak A Saito, José Q García-Maldonado, Pieter C Dorrestein, Lihini I Aluwihare, J Michael Beman	Science Advances	2025-06-06	Abstract
Dynamic control of Argonautes by a rapidly evolving immunological switch.	Chee Kiang Ewe, Guy Teichman, Shir Weiss, Maximilian M L Knott, Sarit Anava, Hila Gingold, Mario Bardan Sarmiento, Emily Troemel, Oded Rechavi	Current Biology : CB	2025-06-05	Abstract
Panose prevents acute-on-chronic liver failure by reducing bacterial infection in mice.	Jiaxin Li, Shihao Xie, Meiling Chen, Changze Hong, Yuqi Chen, Fengyuan Lyu, Niexin Tang, Tianqi Chen, Lingyan Zhao, Weihao Zou, Hongjuan Peng, Jingna Bao, Peng Gu, Bernd Schnabl, Jinjun Chen, Peng Chen	The Journal Of Clinical Investigation	2025-06-03	Abstract
Current Clinical Laboratory Challenges to Widespread Adoption of Phage Therapy in the United States.	Ahnika Kline, Ana G Cobián Güemes, Jennifer Yore, Chandrabali Ghose, Daria Van Tyne, Katrine Whiteson, David T Pride	Antibiotics (Basel, Switzerland)	2025-05-29	Abstract
Identifying wastewater chemicals in coastal aerosols.	Adam Cooper, Lucia Cancelada, Ralph Riley Torres, Kathryn Belcher, Mallory Small, Pedro Belda-Ferre, Clare Morris, Brock Mitts, Julie Dinasquet, Rob Knight, Jonathan H Slade, Kimberly A Prather	Science Advances	2025-05-28	Abstract
Characterizing Long COVID Symptoms During Early Childhood.	Rachel S Gross, Tanayott Thaweethai, Amy L Salisbury, Lawrence C Kleinman, Sindhu Mohandas, Kyung E Rhee, Jessica N Snowden, Kelan G Tantisira, David Warburton, John C Wood, Patricia A Kinser, Joshua D Milner, Erika B Rosenzweig, Katherine Irby, Valerie J Flaherman, Elizabeth W Karlson, Lori B Chibnik, Deepti B Pant, Aparna Krishnamoorthy, Richard Gallagher, Michelle F Lamendola-Essel, Denise C Hasson, Stuart D Katz, Shonna Yin, Benard P Dreyer, Frank Blancero, Megan Carmilani, K Coombs, Megan L Fitzgerald, Rebecca J Letts, Aimee K Peddie, Andrea S Foulkes, Melissa S Stockwell, , , Judy L Aschner, Andrew M Atz, Dithi Banerjee, Amanda Bogie, Hulya Bukulmez, Katharine Clouser, Lesley A Cottrell, Kelly Cowan, Viren A D'Sa, Allen Dozor, Amy J Elliott, E Vincent S Faustino, Alexander G Fiks, Sunanda Gaur, Maria L Gennaro, Stewart Gordon, Uzma N Hasan, Christina M Hester, Alexander Hogan, Daniel S Hsia, David C Kaelber, Jessica S Kosut, Sankaran Krishnan, Russell J McCulloh, Ian C Michelow, Sheila M Nolan, Carlos R Oliveira, Lynn M Olson, Wilson D Pace, Paul Palumbo, Hengameh Raissy, Andy Reyes, Judith L Ross, Juan C Salazar, Rangaraj Selvarangan, Cheryl R Stein, Michelle D Stevenson, Ronald J Teufel, Alan Werzberger, John M Westfall, Kathleen Zani, William T Zempsky, Emily Zimmerman, Marie-Abele C Bind, James Chan, Zoe Guan, Richard E Morse, Harrison T Reeder, Torri D Metz, Jane W Newburger, Dongngan T Truong	JAMA Pediatrics	2025-05-27	Abstract
Leveraging pre-vaccination antibody titres across multiple influenza H3N2 variants to forecast the post-vaccination response.	Hannah Stacey, Michael A Carlock, James D Allen, Hannah B Hanley, Shane Crotty, Ted M Ross, Tal Einav	EBioMedicine	2025-05-26	Abstract
Enabling pan-repository reanalysis for big data science of public metabolomics data.	Yasin El Abiead, Michael Strobel, Thomas Payne, Eoin Fahy, Claire O'Donovan, Shankar Subramamiam, Juan Antonio Vizcaíno, Ozgur Yurekten, Victoria Deleray, Simone Zuffa, Shipei Xing, Helena Mannochio-Russo, Ipsita Mohanty, Haoqi Nina Zhao, Andres M Caraballo-Rodriguez, Paulo Wender P Gomes, Nicole E Avalon, Trent R Northen, Benjamin P Bowen, Katherine B Louie, Pieter C Dorrestein, Mingxun Wang	Nature Communications	2025-05-24	Abstract
Model of metabolism and gene expression predicts proteome allocation in Pseudomonas putida.	Juan D Tibocha-Bonilla, Vishant Gandhi, Chloe Lieng, Oriane Moyne, Rodrigo Santibáñez-Palominos, Karsten Zengler	NPJ Systems Biology And Applications	2025-05-24	Abstract
Multiple steps of dynein activation by Lis1 visualized by cryo-EM.	Agnieszka A Kendrick, Kendrick H V Nguyen, Wen Ma, Eva P Karasmanis, Rommie E Amaro, Samara L Reck-Peterson, Andres E Leschziner	Nature Structural & Molecular Biology	2025-05-23	Abstract
Population genomics of recovery and extinction in Hawaiian honeycreepers.	Christopher C Kyriazis, Madhvi Venkatraman, Bryce Masuda, Cynthia C Steiner, Loren Cassin-Sackett, Lisa H Crampton, Alison M Flanagan, Jeffrey T Foster, Marlys L Houck, Ann C Misuraca, Eben H Paxton, Jacqueline A Robinson, Robert C Fleischer, Oliver A Ryder, Michael G Campana, Aryn P Wilder	Current Biology : CB	2025-05-22	Abstract
Targeted inhibition of pathobiont virulence factor mitigates alcohol-associated liver disease.	Yongqiang Yang, Yi Duan, Sonja Lang, Marcos F Fondevila, David Schöler, Aenne Harberts, Noemí Cabré, Sainan Chen, Yan Shao, Kevin Vervier, Yukiko Miyamoto, Xinlian Zhang, Huikuan Chu, Ling Yang, Chen Tan, Lars Eckmann, Francisco Bosques-Padilla, Elizabeth C Verna, Juan G Abraldes, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie L Shawcross, Alexandre Louvet, Michael R Lucey, Philippe Mathurin, Guadalupe Garcia-Tsao, Ramon Bataller, Peter Stärkel, Trevor D Lawley, Bernd Schnabl	Cell Host & Microbe	2025-05-21	Abstract
Wildfire-Driven Changes in Terrestrial Subsidies Shift Freshwater Microbial and Zooplankton Communities to New Compositional States.	Margaret Y Demmel, Christopher B Wall, Cody J Spiegel, Natalia Erazo, Evelyn M Diaz, Madeline G Perreault, Elisabet Perez-Coronel, Sara L Jackrel, Jeff S Bowman, Jonathan B Shurin	Molecular Ecology	2025-05-20	Abstract
Genomic description of sp. nov., a bacterium collected from the International Space Station that exhibits unique antimicrobial-resistant and virulent phenotype.	Megan S Hill, Vanessa R Minnis, Anna C Simpson, Mariana C Salas Garcia, Davis Bone, Ryan K Chung, Ella Rushton, Asif Hameed, Punchappady D Rekha, Jack A Gilbert, Kasthuri Venkateswaran	MSystems	2025-05-20	Abstract
Host Evolution Improves Genetic Circuit Function in Complex Growth Environments.	Joanna T Zhang, Andrew Lezia, Philip Emmanuele, Muyao Wu, Elina C Olson, Aayush Somani, Adam M Feist, Jeff Hasty	ACS Synthetic Biology	2025-05-20	Abstract
Discovery of acylsulfenic acid-featuring natural product sulfenicin and characterization of its biosynthesis.	Dan Xue, Hongbin Zou, Yanping Qiu, Wei Lv, Michael D Madden, Mingming Xu, Xiaoying Lian, Conor Pulliam, Ethan A Older, Lukuan Hou, Andrew Campbell, Tristan de Rond, Takayoshi Awakawa, Chunhua Yuan, Bradley S Moore, Jie Li	Nature Chemistry	2025-05-20	Abstract
Polymicrobial urine cultures: reconciling contamination with the urobiome while recognizing the pathogens.	Robert B Moreland, Linda Brubaker, Alan J Wolfe	Frontiers In Cellular And Infection Microbiology	2025-05-19	Abstract
Gut microbiome compositional and functional features associate with Alzheimer's disease pathology.	Jea Woo Kang, Lora A Khatib, Margo B Heston, Amanda H Dilmore, Jennifer S Labus, Yuetiva Deming, Leyla Schimmel, Colette Blach, Daniel McDonald, Antonio Gonzalez, MacKenzie Bryant, Tyler K Ulland, Sterling C Johnson, Sanjay Asthana, Cynthia M Carlsson, Nathaniel A Chin, Kaj Blennow, Henrik Zetterberg, Federico E Rey, , Rima Kaddurah-Daouk, Rob Knight, Barbara B Bendlin	Alzheimer's & Dementia : The Journal Of The Alzheimer's Association	2025-05-19	Abstract
Evolution-guided tolerance engineering of Pseudomonas putida KT2440 for production of the aviation fuel precursor isoprenol.	Hyun Gyu Lim, Aparajitha Srinivasan, Russel Menchavez, Ian S Yunus, Myung Hyun Noh, Megan White, Yan Chen, Jennifer W Gin, Bernhard O Palsson, Taek Soon Lee, Christopher J Petzold, Thomas Eng, Aindrila Mukhopadhyay, Adam M Feist	Metabolic Engineering	2025-05-19	Abstract
Fecal carriage of multidrug-resistant organisms increases the risk of hepatic encephalopathy in patients with cirrhosis: insights from gut microbiota and metabolite features.	Pei-Shan Wu, Pei-Chang Lee, Tien-En Chang, Yun-Cheng Hsieh, Chi-Wei Huang, Chao-Hsiung Lin, Yi-Long Huang, Yi-Tsung Lin, Teh-Ia Huo, Bernd Schnabl, Kuei-Chuan Lee, Ming-Chih Hou	Gut Pathogens	2025-05-16	Abstract
Interaction Between Human Gut Microbiota and Artemisinin: A Multi-Omics Perspective.	Paulo Wender Portal Gomes, Helena Mannochio-Russo, Stanislav N Lablokov, Dmitry A Rodionov, Heejung Yang, Pieter C Dorrestein, Scott N Peterson, Christine Tara Peterson	ACS Omega	2025-05-15	Abstract
Phage Therapy for Urinary Tract Infections: Progress and Challenges Ahead.	Chase J Morgan, Haley Atkins, Alan J Wolfe, Linda Brubaker, Saima Aslam, Catherine Putonti, Michael B Doud, Lindsey A Burnett	International Urogynecology Journal	2025-05-13	Abstract
Genome-wide analyses identify 30 loci associated with obsessive-compulsive disorder.	Nora I Strom, Zachary F Gerring, Marco Galimberti, Dongmei Yu, Matthew W Halvorsen, Abdel Abdellaoui, Cristina Rodriguez-Fontenla, Julia M Sealock, Tim Bigdeli, Jonathan R Coleman, Behrang Mahjani, Jackson G Thorp, Katharina Bey, Christie L Burton, Jurjen J Luykx, Gwyneth Zai, Silvia Alemany, Christine Andre, Kathleen D Askland, Julia Bäckman, Nerisa Banaj, Cristina Barlassina, Judith Becker Nissen, O Joseph Bienvenu, Donald Black, Michael H Bloch, Sigrid Børte, Rosa Bosch, Michael Breen, Brian P Brennan, Helena Brentani, Joseph D Buxbaum, Jonas Bybjerg-Grauholm, Enda M Byrne, Judit Cabana-Dominguez, Beatriz Camarena, Adrian Camarena, Carolina Cappi, Angel Carracedo, Miguel Casas, Maria Cristina Cavallini, Valentina Ciullo, Edwin H Cook, Jesse Crosby, Bernadette A Cullen, Elles J De Schipper, Richard Delorme, Srdjan Djurovic, Jason A Elias, Xavier Estivill, Martha J Falkenstein, Bengt T Fundin, Lauryn Garner, Christina Gironda, Fernando S Goes, Marco A Grados, Jakob Grove, Wei Guo, Jan Haavik, Kristen Hagen, Kelly Harrington, Alexandra Havdahl, Kira D Höffler, Ana G Hounie, Donald Hucks, Christina Hultman, Magdalena Janecka, Eric Jenike, Elinor K Karlsson, Kara Kelley, Julia Klawohn, Janice E Krasnow, Kristi Krebs, Christoph Lange, Nuria Lanzagorta, Daniel Levey, Kerstin Lindblad-Toh, Fabio Macciardi, Brion Maher, Brittany Mathes, Evonne McArthur, Nathaniel McGregor, Nicole C McLaughlin, Sandra Meier, Euripedes C Miguel, Maureen Mulhern, Paul S Nestadt, Erika L Nurmi, Kevin S O'Connell, Lisa Osiecki, Olga Therese Ousdal, Teemu Palviainen, Nancy L Pedersen, Fabrizio Piras, Federica Piras, Sriramya Potluri, Raquel Rabionet, Alfredo Ramirez, Scott Rauch, Abraham Reichenberg, Mark A Riddle, Stephan Ripke, Maria C Rosário, Aline S Sampaio, Miriam A Schiele, Anne Heidi Skogholt, Laura G Sloofman, Jan Smit, María Soler Artigas, Laurent F Thomas, Eric Tifft, Homero Vallada, Nathanial van Kirk, Jeremy Veenstra-VanderWeele, Nienke N Vulink, Christopher P Walker, Ying Wang, Jens R Wendland, Bendik S Winsvold, Yin Yao, Hang Zhou, , , Arpana Agrawal, Pino Alonso, Götz Berberich, Kathleen K Bucholz, Cynthia M Bulik, Danielle Cath, Damiaan Denys, Valsamma Eapen, Howard Edenberg, Peter Falkai, Thomas V Fernandez, Abby J Fyer, J M Gaziano, Dan A Geller, Hans J Grabe, Benjamin D Greenberg, Gregory L Hanna, Ian B Hickie, David M Hougaard, Norbert Kathmann, James Kennedy, Dongbing Lai, Mikael Landén, Stéphanie Le Hellard, Marion Leboyer, Christine Lochner, James T McCracken, Sarah E Medland, Preben B Mortensen, Benjamin M Neale, Humberto Nicolini, Merete Nordentoft, Michele Pato, Carlos Pato, David L Pauls, John Piacentini, Christopher Pittenger, Danielle Posthuma, Josep Antoni Ramos-Quiroga, Steven A Rasmussen, Margaret A Richter, David R Rosenberg, Stephan Ruhrmann, Jack F Samuels, Sven Sandin, Paul Sandor, Gianfranco Spalletta, Dan J Stein, S Evelyn Stewart, Eric A Storch, Barbara E Stranger, Maurizio Turiel, Thomas Werge, Ole A Andreassen, Anders D Børglum, Susanne Walitza, Kristian Hveem, Bjarne K Hansen, Christian Rück, Nicholas G Martin, Lili Milani, Ole Mors, Ted Reichborn-Kjennerud, Marta Ribasés, Gerd Kvale, David Mataix-Cols, Katharina Domschke, Edna Grünblatt, Michael Wagner, John-Anker Zwart, Gerome Breen, Gerald Nestadt, Jaakko Kaprio, Paul D Arnold, Dorothy E Grice, James A Knowles, Helga Ask, Karin J Verweij, Lea K Davis, Dirk J Smit, James J Crowley, Jeremiah M Scharf, Murray B Stein, Joel Gelernter, Carol A Mathews, Eske M Derks, Manuel Mattheisen	Nature Genetics	2025-05-13	Abstract
Genomic map of the functionally extinct northern white rhinoceros ().	Gaojianyong Wang, Marisa L Korody, Björn Brändl, Camilo Jose Hernandez-Toro, Christian Rohrandt, Karl Hong, Andy Wing Chun Pang, Joyce Lee, Giovanna Migliorelli, Mario Stanke, Sarah M Ford, Iris Pollmann, Marlys L Houck, Harris A Lewin, Teri L Lear, Oliver A Ryder, Alexander Meissner, Jeanne F Loring, Franz-Josef Müller	Proceedings Of The National Academy Of Sciences Of The United States Of America	2025-05-13	Abstract
Ethylenediaminetetraacetic Acid Enhances Vancomycin and Reactive Oxygen Species-Mediated Killing of Vancomycin-Intermediate .	Joshua Olson, Anuj K Khetarpal, Allen Jankeel, Arianna Lorenzana, Victor Nizet, George Sakoulas, Erlinda R Ulloa	Open Forum Infectious Diseases	2025-05-13	Abstract
Phylogeographic and genetic network assessment of COVID-19 mitigation protocols on SARS-CoV-2 transmission in university campus residences.	Joel O Wertheim, Tetyana I Vasylyeva, Robert J Wood, Kalen Cantrell, Soraya Piña Contreras, Aryeh Feldheim, Ravi Goyal, Jennifer L Havens, Rob Knight, Louise C Laurent, Niema Moshiri, Robert Neuhard, Shashank Sathe, Alysson Satterlund, Angela Scioscia, Angela Y Song, , Robert T Schooley, Cheryl M Anderson, Natasha K Martin	EBioMedicine	2025-05-09	Abstract
Human milk oligosaccharide metabolism and antibiotic resistance in early gut colonizers: insights from bifidobacteria and lactobacilli in the maternal-infant microbiome.	Anna Samarra, Simone Renwick, Aleksandr A Arzamasov, Dmitry A Rodionov, Kennedy Spann, Raul Cabrera-Rubio, Antia Acuna-Gonzalez, Cecilia Martínez-Costa, Lindsay Hall, Nicola Segata, Andrei L Osterman, Lars Bode, MCarmen Collado	Gut Microbes	2025-05-09	Abstract
Non-Alcoholic Beer Influences Glucose and Lipid Metabolism and Changes Body Composition in Healthy, Young, Male Adults.	Henriette Kreimeyer, Svenja Sydor, Lara Buchholz, Cagatay Toskal, Mustafa Özcürümez, Bernd Schnabl, Wing-Kin Syn, Jan-Peter Sowa, Paul Manka, Ali Canbay	Nutrients	2025-05-09	Abstract
Predictors of cognitive performance in Zambian adults with clade C HIV-1: The roles of antiretroviral therapy (ART)-induced CD4+ T-cell increase and pulmonary tuberculosis.	Knut A Hestad, J Anitha Menon, Mary Shilalukey Ngoma, Lumbuka Kaunda, Norma Kabuba, Ravi Paul, Scott Letendre, Donald R Franklin, Robert K Heaton	Neuropsychology	2025-05-08	Abstract
Spatial and multiomics analysis of human and mouse lung adenocarcinoma precursors reveals TIM-3 as a putative target for precancer interception.	Bo Zhu, Pingjun Chen, Muhammad Aminu, Jian-Rong Li, Junya Fujimoto, Yanhua Tian, Lingzhi Hong, Hong Chen, Xin Hu, Chenyang Li, Natalie Vokes, Andre L Moreira, Don L Gibbons, Luisa M Solis Soto, Edwin Roger Parra Cuentas, Ou Shi, Songhui Diao, Jie Ye, Frank R Rojas, Eduardo Vilar, Anirban Maitra, Ken Chen, Nicolas Navin, Monique Nilsson, Beibei Huang, Simon Heeke, Jianhua Zhang, Cara L Haymaker, Vamsidhar Velcheti, Daniel H Sterman, Veena Kochat, William I Padron, Ludmil B Alexandrov, Zhubo Wei, Xiuning Le, Linghua Wang, Junya Fukuoka, J Jack Lee, Ignacio I Wistuba, Harvey I Pass, Mark Davis, Samir Hanash, Chao Cheng, Steven Dubinett, Avrum Spira, Kunal Rai, Scott M Lippman, P Andrew Futreal, John V Heymach, Alexandre Reuben, Jia Wu, Jianjun Zhang	Cancer Cell	2025-05-08	Abstract
Nasal vaccines for respiratory infections.	Hiroshi Kiyono, Peter B Ernst	Nature	2025-05-07	Abstract
Poor sleep and hepatic steatosis contribute to poorer quality of life in people with human immunodeficiency virus.	Ana N Hyatt, Sai K Kuchana, Eduardo Vilar-Gomez, Richard K Sterling, Susanna Naggie, Sonya L Heath, Jennifer C Price, Laura A Wilson, Holly Crandall, Samer Gawrieh, Naga Chalasani, Rohit Loomba, Mark S Sulkowski, Archita P Desai, Jordan E Lake	World Journal Of Gastroenterology	2025-05-06	Abstract
Wastewater-integrated pathogen surveillance dashboards enable real-time, transparent, and interpretable public health risk assessment and dissemination.	Nosihle S Msomi, Joshua I Levy, Nathaniel L Matteson, Nkosenhle Ndlovu, Phindile Ntuli, Adam Baer, Dylan Pilz, Victor Mabasa, Sipho Gwala, Natasha Singh, Kathleen Subramoney, Emmanuel Phalane, Mokgaetji Macheke, Mantshali Motloung, Thabo Mangena, Lethabo Monametsi, Lebohang Rabotapi, Sibonginkosi Maposa, Amanda Birmingham, Mark Zeller, Smruthi Karthikeyan, Peter De Hoff, Simon Harris, Rob Knight, Louise C Laurent, Kristian G Andersen, Kerrigan McCarthy, Mukhlid Yousif	PLOS Global Public Health	2025-05-05	Abstract
Two years of outdoor cultivation in alternate climates produces little divergence in the productivity of Nannochloropsis.	Ahlem Jebali, Harmanpreet Kaur, Heather Martinez, Stephanie Getto, Cheryl Gleasner, Isidora Echenique-Subiabre, Julia Gerber, F F Omar Holguin, Jakob Nalley, Charles J O'Kelly, Jonathan B Shurin, Shawn R Starkenburg, Alina A Corcoran	The Science Of The Total Environment	2025-05-05	Abstract
All-atom virus simulations to tackle airborne disease.	Abigail C Dommer, Nicholas A Wauer, Siewert J Marrink, Rommie E Amaro	Current Opinion In Structural Biology	2025-05-03	Abstract
A responsive living material prepared by diffusion reveals extracellular enzyme activity of cyanobacteria.	Lisa Tang, Nathan T Soulier, Rebecca Wheeler, Jonathan K Pokorski, James W Golden, Susan S Golden, Jinhye Bae	Proceedings Of The National Academy Of Sciences Of The United States Of America	2025-05-01	Abstract
Gut microbiota-targeted therapies in pediatric chronic kidney disease: gaps and opportunities.	Arpana Iyengar, Balamurugan Ramadass, Shruthi Venkatesh, Robert H Mak	Pediatric Nephrology (Berlin, Germany)	2025-05-01	Abstract
Oral Microbiome Profile of the US Population.	Anil K Chaturvedi, Emily Vogtmann, Jianxin Shi, Yukiko Yano, Martin J Blaser, Nicholas A Bokulich, J Gregory Caporaso, Maura L Gillison, Barry I Graubard, Xing Hua, Autumn G Hullings, Lisa Kahle, Rob Knight, Shilan Li, Jody McLean, Vaishnavi Purandare, Yunhu Wan, Neal D Freedman, Christian C Abnet	JAMA Network Open	2025-05-01	Abstract
Interpreting roles of mutations associated with the emergence of USA300 strains using transcriptional regulatory network reconstruction.	Saugat Poudel, Jason Hyun, Ying Hefner, Jon Monk, Victor Nizet, Bernhard O Palsson	ELife	2025-04-30	Abstract
gen. nov., sp. nov., a novel moderately halophilic, thermotolerant, bacterium isolated from a brine lake.	Luke A Fisher, Saloni R Dangre, Arthur Odenheimer, Nirav Patel, Peter T Doran, Jeff S Bowman, Britney E Schmidt, Douglas H Bartlett	International Journal Of Systematic And Evolutionary Microbiology	2025-04-30	Abstract
A live bacteria enzyme assay for identification of human disease mutations and drug screening.	Donghui Choe, Bernhard O Palsson	Nature Biomedical Engineering	2025-04-30	Abstract
Independent and combined adverse effects of neurocognitive impairment and depression on everyday functioning and quality of life in people with HIV.	Crystal X Wang, Victoria O Chentsova, Maximo R Prescott, Anya Umlauf, David J Moore, Ronald J Ellis, Mariana Cherner, Murray B Stein, Scott L Letendre, Robert K Heaton, Jennifer E Iudicello	Journal Of The International Neuropsychological Society : JINS	2025-04-29	Abstract
The role of artificial intelligence in microbial sciences to support climate resilience.	Jack A Gilbert, Karsten Zengler	Nature Reviews. Microbiology	2025-04-25	Abstract
Mind over microbiota: neurons call the shots in the gut.	Wuling Zhong, Karen Wang, Amir Zarrinpar	Nature Metabolism	2025-04-22	Abstract
Aspartate Is A Determinant of TNF-α Biogenesis in Sub-Saharan Africa: Insight Into the Pathogenesis of Noncommunicable Diseases.	Stephen W Bickler, David M Cauvi, Jack A Gilbert, Romeo C Ignacio, Emmanuel A Ameh, Robert T Schooley, Emilia V Noormahomed	FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology	2025-04-22	Abstract
Pharmacokinetics and Safety of Ceftazidime-Avibactam in Neonates and Young Infants: a Phase 2a, Multicenter Prospective Trial.	John Bradley, Emmanuel Roilides, Margaret Tawadrous, Jean Li Yan, Elena Soto, Gregory G Stone, Shweta Kamat, Paurus Irani, Richard England	Journal Of The Pediatric Infectious Diseases Society	2025-04-19	Abstract
The Urinary, Vaginal, and Perineal Microbiome: Commonalities and Differences.	Anisa Nasse, Melline Fontes Noronha, Linda Brubaker, Alan J Wolfe	International Urogynecology Journal	2025-04-17	Abstract
Social and environmental predictors of gut microbiome age in wild baboons.	Mauna R Dasari, Kimberly E Roche, David Jansen, Jordan Anderson, Susan C Alberts, Jenny Tung, Jack A Gilbert, Ran Blekhman, Sayan Mukherjee, Elizabeth A Archie	ELife	2025-04-17	Abstract
Liposomal Nanotraps Neutralize Toxins to Enhance Macrophage Viability and Antibacterial Capacity.	Hervé Besançon, Margherita Polidori, Andrea Hostettler, Victor Nizet, Anna Oevermann, Eduard Babiychuk	Infectious Microbes & Diseases	2025-04-17	Abstract
Soil depth determines the microbial communities in fields within a uniform regional environment.	Emily R Murray, Jeremiah J Minich, Jocelyn Saxton, Marie de Gracia, Nathaniel Eck, Nicholas Allsing, Justine Kitony, Kavi Patel-Jhawar, Eric E Allen, Todd P Michael, Nadia Shakoor	Microbiology Spectrum	2025-04-16	Abstract
Insertion sequence-mediated phage resistance contributes to attenuated colonization of cytolytic variants in the gut.	Jumpei Fujiki, Tomohiro Nakamura, Henriette Kreimeyer, Cristina Llorente, Derrick E Fouts, Bernd Schnabl	Microbiology Spectrum	2025-04-15	Abstract
Targeting the Gut Microbiota's Role in Host Energy Absorption With Precision Nutrition Interventions for the Prevention and Treatment of Obesity.	Karen D Corbin, Daria Igudesman, Steven R Smith, Karsten Zengler, Rosa Krajmalnik-Brown	Nutrition Reviews	2025-04-15	Abstract
Rapid identification of key antibiotic resistance genes in using high-resolution genome-scale CRISPRi screening.	Donghui Choe, Eunju Lee, Kangsan Kim, Soonkyu Hwang, Ki Jun Jeong, Bernhard O Palsson, Byung-Kwan Cho, Suhyung Cho	IScience	2025-04-15	Abstract
Net rate of lateral gene transfer in marine prokaryoplankton.	Ramunas Stepanauskas, Julia M Brown, Shayesteh Arasti, Uyen Mai, Gregory Gavelis, Maria Pachiadaki, Oliver Bezuidt, Jacob H Munson-McGee, Tianyi Chang, Steven J Biller, Paul M Berube, Siavash Mirarab	The ISME Journal	2025-04-14	Abstract
Sex differences in adenosine deaminase activity associate with disparities in SARS-CoV-2 innate immunity.	Priyanka Saminathan, Ian T Mathews, Ahmad Alimadadi, Kai Fung, Kiyokazu Kakugawa, Leo A B Joosten, Mihai G Netea, Mohit Jain, Susan Cheng, Catherine C Hedrick, Sonia Sharma	IScience	2025-04-14	Abstract
Microbiologist in the Clinic: Antibiotic Dependent in her 30 s.	Linda Brubaker, Harry Horsley, Rajvinder Khasriya, Alan J Wolfe	International Urogynecology Journal	2025-04-12	Abstract
Associations of alcohol with the human gut microbiome and prospective health outcomes in the FINRISK 2002 cohort.	Kari Koponen, Daniel McDonald, Pekka Jousilahti, Guillaume Meric, Michael Inouye, Leo Lahti, Teemu Niiranen, Satu Männistö, Aki Havulinna, Rob Knight, Veikko Salomaa	European Journal Of Nutrition	2025-04-11	Abstract
Psychological stress increases skin infection through the action of TGFβ to suppress immune-acting fibroblasts.	Hung Chan, Fengwu Li, Tatsuya Dokoshi, Kellen J Cavagnero, Qing Li, Yang Chen, Carlos Aguilera, Teruaki Nakatsuji, Edward Liu, Aaryan Indra, Daping Yang, Ottaviani Valentina, Tomofumi Numata, Brittany Crown, Henry Li, Kevin J Williams, Isaac M Chiu, Steven J Bensinger, WanJun Chen, Richard L Gallo	Science Immunology	2025-04-11	Abstract
Clinical translation of microbiome research.	Jack A Gilbert, Meghan B Azad, Fredrik Bäckhed, Martin J Blaser, Mariana Byndloss, Charles Y Chiu, Hiutung Chu, Lara R Dugas, Eran Elinav, Sean M Gibbons, Katharine E Gilbert, Matthew R Henn, Suzanne L Ishaq, Ruth E Ley, Susan V Lynch, Eran Segal, Tim D Spector, Philip Strandwitz, Jotham Suez, Carolina Tropini, Katrine Whiteson, Rob Knight	Nature Medicine	2025-04-11	Abstract
Allosteric modulation by the fatty acid site in the glycosylated SARS-CoV-2 spike.	A Sofia F Oliveira, Fiona L Kearns, Mia A Rosenfeld, Lorenzo Casalino, Lorenzo Tulli, Imre Berger, Christiane Schaffitzel, Andrew D Davidson, Rommie E Amaro, Adrian J Mulholland	ELife	2025-04-10	Abstract
Complete sequencing of ape genomes.	DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A Logsdon, Steven J Solar, Dmitry Antipov, Brandon D Pickett, Yana Safonova, Francesco Montinaro, Yanting Luo, Joanna Malukiewicz, Jessica M Storer, Jiadong Lin, Abigail N Sequeira, Riley J Mangan, Glenn Hickey, Graciela Monfort Anez, Parithi Balachandran, Anton Bankevich, Christine R Beck, Arjun Biddanda, Matthew Borchers, Gerard G Bouffard, Emry Brannan, Shelise Y Brooks, Lucia Carbone, Laura Carrel, Agnes P Chan, Juyun Crawford, Mark Diekhans, Eric Engelbrecht, Cedric Feschotte, Giulio Formenti, Gage H Garcia, Luciana de Gennaro, David Gilbert, Richard E Green, Andrea Guarracino, Ishaan Gupta, Diana Haddad, Junmin Han, Robert S Harris, Gabrielle A Hartley, William T Harvey, Michael Hiller, Kendra Hoekzema, Marlys L Houck, Hyeonsoo Jeong, Kaivan Kamali, Manolis Kellis, Bryce Kille, Chul Lee, Youngho Lee, William Lees, Alexandra P Lewis, Qiuhui Li, Mark Loftus, Yong Hwee Eddie Loh, Hailey Loucks, Jian Ma, Yafei Mao, Juan F I Martinez, Patrick Masterson, Rajiv C McCoy, Barbara McGrath, Sean McKinney, Britta S Meyer, Karen H Miga, Saswat K Mohanty, Katherine M Munson, Karol Pal, Matt Pennell, Pavel A Pevzner, David Porubsky, Tamara Potapova, Francisca R Ringeling, Joana L Rocha, Oliver A Ryder, Samuel Sacco, Swati Saha, Takayo Sasaki, Michael C Schatz, Nicholas J Schork, Cole Shanks, Linnéa Smeds, Dongmin R Son, Cynthia Steiner, Alexander P Sweeten, Michael G Tassia, Françoise Thibaud-Nissen, Edmundo Torres-González, Mihir Trivedi, Wenjie Wei, Julie Wertz, Muyu Yang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhang, Sarah A Zhao, Yixin Zhu, Erich D Jarvis, Jennifer L Gerton, Iker Rivas-González, Benedict Paten, Zachary A Szpiech, Christian D Huber, Tobias L Lenz, Miriam K Konkel, Soojin V Yi, Stefan Canzar, Corey T Watson, Peter H Sudmant, Erin Molloy, Erik Garrison, Craig B Lowe, Mario Ventura, Rachel J O'Neill, Sergey Koren, Kateryna D Makova, Adam M Phillippy, Evan E Eichler	Nature	2025-04-09	Abstract
Conserved chromatin regulators control the transcriptional immune response to intracellular pathogens in Caenorhabditis elegans.	Eillen Tecle, Paaramitha Warushavithana, Samuel Li, Michael J Blanchard, Crystal B Chhan, Theresa Bui, Ryan S Underwood, Malina A Bakowski, Emily R Troemel, Vladimir Lažetić	PLoS Genetics	2025-04-07	Abstract
Suspended detrital particles support a distinct microbial ecosystem in Palmer Canyon, Antarctica, a coastal biological hotspot.	Elizabeth Connors, Katherine L Gallagher, Avishek Dutta, Matthew Oliver, Jeff S Bowman	Polar Biology	2025-04-07	Abstract
Gut Microbiome as a Risk Factor for Future CKD.	Tapio Hellman, Li-Fang Yeo, Joonatan Palmu, Aki Havulinna, Pekka Jousilahti, Ville Laitinen, Katariina Pärnänen, Veikko Salomaa, Leo Lahti, Rob Knight, Teemu Niiranen	Kidney International Reports	2025-04-07	Abstract
Unlocking the potential of the gut microbiome in liver regeneration: Benefits and mechanistic insights.	Wenchao Wei, Bernd Schnabl	Acta Pharmaceutica Sinica. B	2025-04-05	Abstract
Extracellular respiration is a latent energy metabolism in Escherichia coli.	Biki Bapi Kundu, Jayanth Krishnan, Richard Szubin, Arjun Patel, Bernhard O Palsson, Daniel C Zielinski, Caroline M Ajo-Franklin	Cell	2025-04-04	Abstract
Examining the potential prebiotic effect of almonds.	Maha Tahiri, Jack A Gilbert	Journal Of Applied Microbiology	2025-03-28	Abstract
Anesthetic choice impacts mortality and bacterial clearance in a murine experimental pneumonia model.	Hunter Gage, Shawn M Hannah, Bryan Hancock, Ingrid Cornax, Jason Munguia, Joshua Olson, Elisabet Bjånes, Raymond Zurich, Alexandria Hoffman, Fatemeh Askarian, Khang Tong, Lin Liu, Victor Nizet, Angela Meier	BMC Infectious Diseases	2025-03-27	Abstract
Expression of Fluorescence Reporters and Natural Products in Native Gut .	Dake Liu, Phuong M Ton, David Zong, Amir Zarrinpar, Yousong Ding	ACS Synthetic Biology	2025-03-26	Abstract
Implications of Cognitive Impairment on Antihypertensive Medication Use in HIV.	Azin Tavasoli, Bin Tang, Mohammadsobhan S Andalibi, Donald R Franklin, Scott L Letendre, Robert K Heaton, Ronald J Ellis	Viruses	2025-03-26	Abstract
Inhibition of human-HPV hybrid ecDNA enhancers reduces oncogene expression and tumor growth in oropharyngeal cancer.	Takuya Nakagawa, Jens Luebeck, Kaiyuan Zhu, Joshua T Lange, Roman Sasik, Chad Phillips, Sayed Sadat, Sara Javadzadeh, Qian Yang, Abdula Monther, Santiago Fassardi, Allen Wang, Kersi Pestonjamasp, Brin Rosenthal, Kathleen M Fisch, Paul Mischel, Vineet Bafna, Joseph A Califano	Nature Communications	2025-03-26	Abstract
The P-loop NTPase RUVBL2 is a conserved clock component across eukaryotes.	Meimei Liao, Yanqin Liu, Zhancong Xu, Mingxu Fang, Ziqing Yu, Yufan Cui, Zhengda Sun, Ran Huo, Jieyu Yang, Fusheng Huang, Mingming Liu, Qin Zhou, Xiaocui Song, Hui Han, She Chen, Xiaodong Xu, Ximing Qin, Qun He, Dapeng Ju, Tao Wang, Nirav Thakkar, Paul E Hardin, Susan S Golden, Eric Erquan Zhang	Nature	2025-03-26	Abstract
Diverse priming outcomes under conditions of very rare precursor B cells.	Patrick J Madden, Ester Marina-Zárate, Kristen A Rodrigues, Jon M Steichen, Monolina Shil, Kaiyuan Ni, Katarzyna Kaczmarek Michaels, Laura Maiorino, Amit A Upadhyay, Swati Saha, Arpan Pradhan, Oleksandr Kalyuzhiny, Alessia Liguori, Paul G Lopez, Ivy Phung, Claudia Flynn, Amelia Zhou, Mariane B Melo, Ashley Lemnios, Nicole Phelps, Erik Georgeson, Nushin Alavi, Michael Kubitz, Danny Lu, Saman Eskandarzadeh, Amanda Metz, Oscar L Rodriguez, Kaitlyn Shields, Steven Schultze, Melissa L Smith, Brandon S Healy, Deuk Lim, Vanessa R Lewis, Elana Ben-Akiva, William Pinney, Justin Gregory, Shuhao Xiao, Diane G Carnathan, Sudhir Pai Kasturi, Corey T Watson, Steven E Bosinger, Guido Silvestri, William R Schief, Darrell J Irvine, Shane Crotty	Immunity	2025-03-25	Abstract
Sequential membrane- and protein-bound organelles compartmentalize genomes during phage infection.	Emily G Armbruster, Phoolwanti Rani, Jina Lee, Niklas Klusch, Joshua Hutchings, Lizbeth Y Hoffman, Hannah Buschkaemper, Eray Enustun, Benjamin A Adler, Koe Inlow, Arica R VanderWal, Madelynn Y Hoffman, Daksh Daksh, Ann Aindow, Amar Deep, Zaida K Rodriguez, Chase J Morgan, Majid Ghassemian, Thomas G Laughlin, Emeric Charles, Brady F Cress, David F Savage, Jennifer A Doudna, Kit Pogliano, Kevin D Corbett, Elizabeth Villa, Joe Pogliano	Cell Host & Microbe	2025-03-25	Abstract
Implementation of a seamless phase 2/3 study design in the setting of an emergent infectious disease pandemic: Lessons learned from the ACTIV-2 platform COVID-19 treatment trial.	Mark J Giganti, Kara W Chew, Carlee Moser, Joseph J Eron, Mauricio Pinilla, Jonathan Z Li, Justin Ritz, Arzhang Cyrus Javan, David Alain Wohl, Eric S Daar, Judith S Currier, Davey M Smith, Michael D Hughes,	Contemporary Clinical Trials	2025-03-25	Abstract
Protocol for the development, assembly, and testing of a synthetic skin microbial community.	Deepan Thiruppathy, Asama Lekbua, Joanna Coker, Yuhan Weng, Fatemeh Askarian, Armin Kousha, Clarisse Marotz, Amber Hauw, Megan Tjuanta, Victor Nizet, Karsten Zengler	STAR Protocols	2025-03-24	Abstract
A Reflection on the Use of Molecular Simulation to Respond to SARS-CoV-2 Pandemic Threats.	Lorenzo Casalino, Carlos A Ramos-Guzmán, Rommie E Amaro, Carlos Simmerling, Alessio Lodola, Adrian J Mulholland, Katarzyna Świderek, Vicent Moliner	The Journal Of Physical Chemistry Letters	2025-03-21	Abstract
Virocell Necromass Provides Limited Plant Nitrogen and Elicits Rhizosphere Metabolites That Affect Phage Dynamics.	Vlastimil Novak, Michelle C M van Winden, Thomas V Harwood, Rachel Neurath, Suzanne M Kosina, Katherine B Louie, Matthew B Sullivan, Simon Roux, Karsten Zengler, Vivek K Mutalik, Trent R Northen	Plant, Cell & Environment	2025-03-19	Abstract
Is Associated with Disease Severity in MASLD but Its Supplementation Does Not Improve Diet-Induced Steatohepatitis in Mice.	Eliane Münte, Greta Viebahn, Amit Khurana, Jumpei Fujiki, Tomohiro Nakamura, Sonja Lang, Münevver Demir, Bernd Schnabl, Phillipp Hartmann	Microorganisms	2025-03-18	Abstract
Light cues drive community-wide transcriptional shifts in the hypersaline South Bay Salt Works.	Margaret M Weng, Benjamin Klempay, Jeff S Bowman, Luke Fisher, Cyprien Camplong, Peter T Doran, Susan Rundell, Jennifer B Glass, Avishek Dutta, Alexandra Pontefract, Douglas H Bartlett, Britney Schmidt, Sarah Stewart Johnson	Communications Biology	2025-03-17	Abstract
Structure Elucidation, Biosynthetic Gene Cluster Distribution, and Biological Activities of Ketomemicin Analogs in .	Gabriel Castro-Falcón, Dulce G Guillén-Matus, Elany Barbosa Da Silva, Wentao Guo, Alicia Ross, Mateus Sá Magalhães Serafim, Thaís Helena Maciel Fernandes, Dean J Tantillo, Anthony J O'Donoghue, Paul R Jensen	Marine Drugs	2025-03-14	Abstract
Influence of Alcohol on the Intestinal Immune System.	Henriette Kreimeyer, Cristina Llorente, Bernd Schnabl	Alcohol Research : Current Reviews	2025-03-14	Abstract
Observed Mask Wearing and Presence of SARS-CoV-2 in School Wastewater, San Diego County, CA, 2022.	Rebecca Fielding-Miller, Tommi Gaines, Ashkan Hassani, Tina Le, Vinton Omaleki, Marlene Flores, Araz Majnoonian, F Carrissa Wijaya, Rob Knight, Smruthi Karthikeyan, Richard S Garfein	American Journal Of Public Health	2025-03-12	Abstract
Structure of a putative terminal amidation domain in natural product biosynthesis.	Michael R Rankin, Dheeraj Khare, Lena Gerwick, David H Sherman, William H Gerwick, Janet L Smith	Structure (London, England : 1993)	2025-03-11	Abstract
Machine learning uncovers the transcriptional regulatory network for the production host Streptomyces albidoflavus.	Mathias Jönsson, Renata Sigrist, Tetiana Gren, Mykhaylo Semenov Petrov, Nils Emil Junge Marcussen, Anna Svetlova, Pep Charusanti, Peter Gockel, Bernhard O Palsson, Lei Yang, Emre Özdemir	Cell Reports	2025-03-07	Abstract
Gram-positive probiotics improves acetaminophen-induced hepatotoxicity by inhibiting leucine and Hippo-YAP pathway.	Wenkang Gao, Gang Wang, Hang Yuan, Yue Chen, Jiake Che, Zilu Cheng, Liuying Chen, Li Zhang, Yuanqing Zhu, Xin Liu, Ao Liu, Quancheng Yang, Peng Cao, Wei Qian, Weiyan Huang, Bernd Schnabl, Ling Yang, Huikuan Chu	Cell & Bioscience	2025-03-07	Abstract
Effects of temperature and nutrient load on the interaction of Vibrio parahaemolyticus and plastic pollution in the marine environment.	Kara J Wiggin, Ryan K Chung, Jack A Gilbert, Sarah M Allard	Marine Pollution Bulletin	2025-03-05	Abstract
Absolute quantification of the living skin microbiome overcomes relic-DNA bias and reveals specific patterns across volunteers.	Deepan Thiruppathy, Oriane Moyne, Clarisse Marotz, Michael Williams, Perris Navarro, Livia Zaramela, Karsten Zengler	Microbiome	2025-03-04	Abstract
Gut microbiota and derived metabolites mediate obstructive sleep apnea induced atherosclerosis.	Jin Xue, Celeste Allaband, Simone Zuffa, Orit Poulsen, Jason Meadows, Dan Zhou, Pieter C Dorrestein, Rob Knight, Gabriel G Haddad	Gut Microbes	2025-03-02	Abstract
Discovery of metabolites prevails amid in-source fragmentation.	Yasin El Abiead, Adriano Rutz, Simone Zuffa, Bashar Amer, Shipei Xing, Corinna Brungs, Robin Schmid, Mario S P Correia, Andres Mauricio Caraballo-Rodriguez, Amir Zarrinpar, Helena Mannochio-Russo, Michael Witting, Ipsita Mohanty, Tomáš Pluskal, Wout Bittremieux, Rob Knight, Andrew D Patterson, Justin J J van der Hooft, Sebastian Böcker, Warwick B Dunn, Roger G Linington, David S Wishart, Jean-Luc Wolfender, Oliver Fiehn, Nicola Zamboni, Pieter C Dorrestein	Nature Metabolism	2025-02-28	Abstract
Author Correction: Spatial chemistry of citrus reveals molecules bactericidal to Candidatus Liberibacter asiaticus.	Alexander A Aksenov, Alex Blacutt, Nichole Ginnan, Philippe E Rolshausen, Alexey V Melnik, Lotfi Ali, Emily C Gentry, Manikandan Ramasamy, Cristal Zuniga, Karsten Zengler, Kranthi K Mandadi, Pieter C Dorrestein, M Caroline Roper, Greg McCollum	Scientific Reports	2025-02-28	Abstract
Human Untargeted Metabolomics in High-Throughput Gut Microbiome Research: Ethanol vs Methanol.	Simone Zuffa, Vincent Charron-Lamoureux, Caitriona Brennan, Madison Ambre, Rob Knight, Pieter C Dorrestein	Analytical Chemistry	2025-02-27	Abstract
A call for the United States to continue investing in science.	Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley	Applied And Environmental Microbiology	2025-02-27	Abstract
A call for the United States to continue investing in science.	Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley	Microbiology Spectrum	2025-02-27	Abstract
A call for the United States to continue investing in science.	Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley	Journal Of Virology	2025-02-27	Abstract
A call for the United States to continue investing in science.	Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley	Antimicrobial Agents And Chemotherapy	2025-02-27	Abstract
A call for the United States to continue investing in science.	Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley	Journal Of Microbiology & Biology Education	2025-02-27	Abstract
A call for the United States to continue investing in science.	Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley	Microbiology Resource Announcements	2025-02-27	Abstract
A call for the United States to continue investing in science.	Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley	Microbiology And Molecular Biology Reviews : MMBR	2025-02-27	Abstract
A call for the United States to continue investing in science.	Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley	Infection And Immunity	2025-02-27	Abstract
A call for the United States to continue investing in science.	Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley	Clinical Microbiology Reviews	2025-02-27	Abstract
A call for the United States to continue investing in science.	Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley	MSystems	2025-02-27	Abstract
A call for the United States to continue investing in science.	Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley	Journal Of Clinical Microbiology	2025-02-27	Abstract
A call for the United States to continue investing in science.	Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley	MSphere	2025-02-27	Abstract
A call for the United States to continue investing in science.	Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley	MBio	2025-02-27	Abstract
A call for the United States to continue investing in science.	Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley	Journal Of Bacteriology	2025-02-27	Abstract
Dietary intake of the red meat-derived glycan Neu5Gc fuels colorectal cancer through up-regulation of Wnt signaling pathway.	Ana Luiza Lopes, Amanda Carlos Paulino, Mariana A S Thaumaturgo, Wallace Martins Araújo, Philippe Caloba, Kunio Kawanishi, Karl Willert, Rodrigo P De Oliveira, João C Machado, Felipe Lemos, Nissi Varki, Jose Andres Morgado-Diaz, Heinz Läubli, Adriane Regina Todeschini, Ajit Varki, Frederico Alisson-Silva	Cancer Letters	2025-02-27	Abstract
SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx.	Cameron Martino, Benjamin P Kellman, Daniel R Sandoval, Thomas Mandel Clausen, Robert Cooper, Alhosna Benjdia, Feryel Soualmia, Alex E Clark, Aaron F Garretson, Clarisse A Marotz, Se Jin Song, Stephen Wandro, Livia S Zaramela, Rodolfo A Salido, Qiyun Zhu, Erick Armingol, Yoshiki Vázquez-Baeza, Daniel McDonald, James T Sorrentino, Bryn Taylor, Pedro Belda-Ferre, Promi Das, Farhana Ali, Chenguang Liang, Yujie Zhang, Luca Schifanella, Alice Covizzi, Alessia Lai, Agostino Riva, Christopher Basting, Courtney Ann Broedlow, Aki S Havulinna, Pekka Jousilahti, Mehrbod Estaki, Tomasz Kosciolek, Rayus Kuplicki, Teresa A Victor, Martin P Paulus, Kristen E Savage, Jennifer L Benbow, Emma S Spielfogel, Cheryl A M Anderson, Maria Elena Martinez, James V Lacey, Shi Huang, Niina Haiminen, Laxmi Parida, Ho-Cheol Kim, Jack A Gilbert, Daniel A Sweeney, Sarah M Allard, Austin D Swafford, Susan Cheng, Michael Inoyue, Teemu Niiranen, Mohit Jain, Veikko Salomaa, Karsten Zengler, Nichole R Klatt, Jeff Hasty, Olivier Berteau, Aaron F Carlin, Jeffrey D Esko, Nathan E Lewis, Rob Knight	MBio	2025-02-25	Abstract
To Impute or Not To Impute in Untargeted Metabolomics─That is the Compositional Question.	Dennis D Krutkin, Sydney Thomas, Simone Zuffa, Prajit Rajkumar, Rob Knight, Pieter C Dorrestein, Scott T Kelley	Journal Of The American Society For Mass Spectrometry	2025-02-25	Abstract
Objectively measured moderate-to-vigorous physical activity does not attenuate prospective weight gain among african-origin adults spanning the epidemiological transition.	Jessica C Davies, Candice Choo-Kang, Larske Soepnel, Hayli Geffen, Chad Africa, Asanda Mtintsilana, Pascal Bovet, Bharathi Viswanathan, Kweku Bedu-Addo, Jacob Plange-Rhule, Prince Oti Boateng, Kingsley Apusiga, Oscar Akunor Dei, Terrence E Forrester, Marie Williams, Estelle V Lambert, Dale E Rae, Nandipha Sinyanya, Brian T Layden, Jack A Gilbert, Gertrude Ecklu-Mensah, Cara Joyce, Amy Luke, Lara R Dugas	Scientific Reports	2025-02-25	Abstract
Urinary Metabolomic Profile is Minimally Impacted by Common Storage Conditions and Additives.	Kelly C Weldon, Morgan Panitchpakdi, Andrés Mauricio Caraballo-Rodríguez, Alan J Wolfe, Pieter C Dorrestein, Linda Brubaker, Lindsey A Burnett	International Urogynecology Journal	2025-02-24	Abstract
ChIP provides 10-fold microbial DNA enrichment from tissue while minimizing bias.	Shrikant Bhute, Jon G Sanders, Se Jin Song, Sydney Lavoie, Austin Swafford, Caitlin Guccione, Lucas Patel, Antonio Gonzalez, Michelle G Rooks, Rob Knight, Andrew Bartko	Molecular Biology Reports	2025-02-21	Abstract
Pre-pandemic leukocyte count is associated with severity of post-acute sequelae of SARS-CoV-2 infection among older women in the Women's Health Initiative.	Ted K S Ng, Hind A Beydoun, Diane Von Ah, Aladdin H Shadyab, Shu Cheng Wong, Matthew Freiberg, Farha Ikramuddin, Patricia K Nguyen, Philippe Jean-Luc Gradidge, Lihong Qi, Zhao Chen, Keenan A Pituch, Suzi Hong, JoAnn E Manson	Menopause (New York, N.Y.)	2025-02-21	Abstract
The International Space Station has a unique and extreme microbial and chemical environment driven by use patterns.	Rodolfo A Salido, Haoqi Nina Zhao, Daniel McDonald, Helena Mannochio-Russo, Simone Zuffa, Renee E Oles, Allegra T Aron, Yasin El Abiead, Sawyer Farmer, Antonio González, Cameron Martino, Ipsita Mohanty, Ceth W Parker, Lucas Patel, Paulo Wender Portal Gomes, Robin Schmid, Tara Schwartz, Jennifer Zhu, Michael R Barratt, Kathleen H Rubins, Hiutung Chu, Fathi Karouia, Kasthuri Venkateswaran, Pieter C Dorrestein, Rob Knight	Cell	2025-02-21	Abstract
Embracing the systems complexity of microbial ecology and evolution: call for papers.	Leonora Bittleston, Jack Gilbert, Jonathan Klassen, Rachel Mackelprang, Mark J Mandel, Ryan J Newton, Atmika Paudel, Alejandra Rodriguez-Verdugo, Ashley Shade, Roland C Wilhelm, Ying Zhang	MSystems	2025-02-20	Abstract
Traits determine dispersal and colonization abilities of microbes.	Isidora Echenique-Subiabre, Sara L Jackrel, Jay McCarren, Chase C James, Elisabet Perez-Coronel, Cindy Tran, Madeline Perreault, Ugbad Farah, P Signe White, Henry K Baker, Christopher B Wall, Lindsay Sager, Scott Becker, Andrew D Barton, Jonathan B Shurin	Applied And Environmental Microbiology	2025-02-20	Abstract
Embracing the systems complexity of microbial ecology and evolution: call for papers.	Leonora Bittleston, Jack Gilbert, Jonathan Klassen, Rachel Mackelprang, Mark J Mandel, Ryan J Newton, Atmika Paudel, Alejandra Rodriguez-Verdugo, Ashley Shade, Roland C Wilhelm, Ying Zhang	MSystems	2025-02-20	Abstract
Acute-on-chronic liver failure (ACLF): the 'Kyoto Consensus'-steps from Asia.	Ashok Choudhury, Anand V Kulkarni, Vinod Arora, A S Soin, Abdul Kadir Dokmeci, Abhijeet Chowdhury, Abraham Koshy, Ajay Duseja, Ajay Kumar, Ajay Kumar Mishra, Ajay Kumar Patwa, Ajit Sood, Akash Roy, Akash Shukla, Albert Chan, Aleksander Krag, Amar Mukund, Ameet Mandot, Amit Goel, Amna Subhan Butt, Amrish Sahney, Ananta Shrestha, Andrés Cárdenas, Angelo Di Giorgio, Anil Arora, Anil Chandra Anand, Anil Dhawan, Ankur Jindal, Anoop Saraya, Anshu Srivastava, Anupam Kumar, Apichat Kaewdech, Apurva Pande, Archana Rastogi, Arun Valsan, Ashish Goel, Ashish Kumar, Ashwani K Singal, Atsushi Tanaka, Audrey Coilly, Ayaskanta Singh, Babu Lal Meena, Barath Jagadisan, Barjesh Chander Sharma, Bikrant Bihari Lal, C E Eapen, Cesar Yaghi, Chandan Kumar Kedarisetty, Chang Wook Kim, Charles Panackel, Chen Yu, Chetan R Kalal, Chhagan Bihari, Chien Hao Huang, Chitranshu Vasishtha, Christian Jansen, Christian Strassburg, Chun Yen Lin, Constantine J Karvellas, Cosmas Rinaldi Adithya Lesmana, Cyriac Abby Philips, Debbie Shawcross, Dharmesh Kapoor, Dhiraj Agrawal, Diana Alcantara Payawal, Dibya Lochan Praharaj, Dinesh Jothimani, Do Seon Song, Dong Joon Kim, Dong-Sik Kim, Duan Zhongping, Fazal Karim, Francois Durand, Gamal E Shiha, Gennaro D'Amico, George K Lau, Girish Kumar Pati, Graciela Elia Castro Narro, Guan-Huei Lee, Gupse Adali, Guru Prasad Dhakal, Gyongyi Szabo, H C Lin, Hai Li, Hari Kumar Nair, Harshad Devarbhavi, Harshvardhan Tevethia, Hasmik Ghazinian, Hemamala Ilango, Hong Ling Yu, Irsan Hasan, J Fernandez, Jacob George, Jaideep Behari, James Fung, Jasmohan Bajaj, Jaya Benjamin, Jennifer C Lai, Jidong Jia, Jin Hua Hu, Jin Jun Chen, Jin Lin Hou, Jin Mo Yang, Johannes Chang, Jonel Trebicka, Jörg C Kalf, Jose D Sollano, Joy Varghese, Juan Pablo Arab, Jun Li, K Rajender Reddy, Kaiser Raja, Kalpana Panda, Kamal Kajal, Karan Kumar, Kaushal Madan, Kemal Fariz Kalista, Kessarin Thanapirom, Khin Maung Win, Ki Tae Suk, Krishnadas Devadas, Laurentius A Lesmana, Lubna Kamani, Madhumita Premkumar, Madunil A Niriella, Mamun Al Mahtab, Man Fung Yuen, Manal HEl Sayed, Manasa Alla, Manav Wadhawan, Manoj Kumar Sharma, Manoj Sahu, Manya Prasad, Mark Dhinesh Muthiah, Martin Schulz, Meenu Bajpai, Mettu Srinivas Reddy, Michael Praktiknjo, Ming Lung Yu, Mithra Prasad, Mithun Sharma, Mohamed Elbasiony, Mohammed Eslam, Mohd Golam Azam, Mohd Rela, Moreshwar S Desai, Mukul Vij, Nadim Mahmud, Narendra Singh Choudhary, Navin Kumar Marannan, Necati Ormeci, Neeraj Saraf, Nipun Verma, Nobuaki Nakayama, Norifumi Kawada, Oidov Baatarkhuu, Omesh Goyal, Osamu Yokosuka, P N Rao, Paolo Angeli, Pathik Parikh, Patrick S Kamath, Paul J Thuluvath, Philipp Lingohr, Piyush Ranjan, Prashant Bhangui, Pravin Rathi, Puja Sakhuja, Puneet Puri, Qin Ning, R K Dhiman, Rahul Kumar, Rajan Vijayaraghavan, Rajeev Khanna, Rakhi Maiwall, Ravi Mohanka, Richard Moreau, Rino Alvani Gani, Rohit Loomba, Rohit Mehtani, Ruveena Bhavani Rajaram, S S Hamid, Sachin Palnitkar, Sadhna Lal, Sagnik Biswas, Sakkarin Chirapongsathorn, Samagra Agarwal, Sanjeev Sachdeva, Sanjiv Saigal, Santhosh E Kumar, Sargsyan Violeta, Satender Pal Singh, Satoshi Mochida, Saurabh Mukewar, Seema Alam, Seng Gee Lim, Shahinul Alam, Shalimar, Shantan Venishetty, Shikha S Sundaram, Shiran Shetty, Shobna Bhatia, Shweta A Singh, Shyam Kottilil, Simone Strasser, S M Shasthry, Soe Thiha Maung, Soek Siam Tan, Sombat Treeprasertsuk, Sonal Asthana, Steffen Manekeller, Subhash Gupta, Subrat Kumar Acharya, Sudhamshu K C, Sudhir Maharshi, Sumeet Asrani, Sunil Dadhich, Sunil Taneja, Suprabhat Giri, Surender Singh, Tao Chen, Tarana Gupta, Tatsuo Kanda, Tawesak Tanwandee, Teerha Piratvishuth, Ulrich Spengler, V G Mohan Prasad, Vandana Midha, Venera Rakhmetova, Vicente Arroyo, Vikrant Sood, Vinay Kumar Br, Vincent Wai-Sun Wong, Viniyendra Pamecha, Virendra Singh, Vishwa Mohan Dayal, Vivek A Saraswat, WRay Kim, Wasim Jafri, Wenyi Gu, Wong Yu Jun, Xiaolong Qi, Yogesh K Chawla, Yoon Jun Kim, Yu Shi, Zaigham Abbas, Guresh Kumar, Shuichiro Shiina, Lai Wei, Masao Omata, Shiv Kumar Sarin,	Hepatology International	2025-02-17	Abstract
Fluoxetine promotes IL-10-dependent metabolic defenses to protect from sepsis-induced lethality.	Robert M Gallant, Karina K Sanchez, Emeline Joulia, Jessica M Snyder, Christian M Metallo, Janelle S Ayres	Science Advances	2025-02-14	Abstract
Comparison of Methods for Isolation and Characterization of Total and Astrocyte-Enriched Extracellular Vesicles From Human Serum and Plasma.	Leandra K Figueroa-Hall, Kaiping Burrows, Ahlam M Alarbi, Bethany N Hannafon, Cole Hladik, Chibing Tan, Rajagopal Ramesh, Jennifer L Stewart, Victoria B Risbrough, Martin P Paulus, T Kent Teague	Journal Of Extracellular Biology	2025-02-14	Abstract
Identification of Substituted 4-Aminocinnolines as Broad-Spectrum Antiparasitic Agents.	Andrew Spaulding, Amrita Sharma, Miriam A Giardini, Benjamin Hoffman, Jean A Bernatchez, Laura-Isobel McCall, Claudia M Calvet, Jasmin Ackermann, Julia M Souza, Diane Thomas, Caroline C Millard, William G Devine, Baljinder Singh, Everton M Silva, Susan E Leed, Norma E Roncal, Erica C Penn, Jessey Erath, Gaurav Kumar, Yadira Sepulveda, Arnold Garcia, Ana Rodriguez, Nelly El-Sakkary, Richard J Sciotti, Robert F Campbell, Jeremiah D Momper, James H McKerrow, Conor R Caffrey, Jair L Siqueira-Neto, Michael P Pollastri, Kojo Mensa-Wilmot, Lori Ferrins	ACS Infectious Diseases	2025-02-12	Abstract
Author Correction: Transcription Factor 4 loss-of-function is associated with deficits in progenitor proliferation and cortical neuron content.	Fabio Papes, Antonio P Camargo, Janaina S de Souza, Vinicius M A Carvalho, Ryan A Szeto, Erin LaMontagne, José R Teixeira, Simoni H Avansini, Sandra M Sánchez-Sánchez, Thiago S Nakahara, Carolina N Santo, Wei Wu, Hang Yao, Barbara M P Araújo, Paulo E N F Velho, Gabriel G Haddad, Alysson R Muotri	Nature Communications	2025-02-12	Abstract
Single-Enzyme Conversion of Tryptophan to Skatole and Cyanide Expands the Mechanistic Competence of Diiron Oxidases.	Sanjoy Adak, Logan A Calderone, August Krueger, Maria-Eirini Pandelia, Bradley S Moore	Journal Of The American Chemical Society	2025-02-12	Abstract
Clinical Application of Bacteriophage Therapy in Children.	Nanda Ramchandar, John S Bradley	Pediatrics	2025-02-11	Abstract
Modulating the developing gut microbiota with 2'-fucosyllactose and pooled human milk oligosaccharides.	Simone Renwick, Annalee Furst, Mikael Knip, , Lars Bode, Jayne S Danska, Emma Allen-Vercoe	Microbiome	2025-02-07	Abstract
Metabolic deficiencies underlie reduced plasmacytoid dendritic cell IFN-I production following viral infection.	Trever T Greene, Yeara Jo, Carolina Chiale, Monica Macal, Ziyan Fang, Fawziyah S Khatri, Alicia L Codrington, Katelynn R Kazane, Elizabeth Akbulut, Shobha Swaminathan, Yu Fujita, Patricia Fitzgerald-Bocarsly, Thekla Cordes, Christian Metallo, David A Scott, Elina I Zúñiga	Nature Communications	2025-02-07	Abstract
Comprehensive proteolytic profiling of Aedes aegypti mosquito midgut extracts: Unraveling the blood meal protein digestion system.	Anthony J O'Donoghue, Chenxi Lui, Carter J Simington, Saira Montermoso, Elizabeth Moreno-Galvez, Mateus Sá M Serafim, Olive E Burata, Rachael M Lucero, James T Nguyen, Daniel Fong, Khanh Tran, Neomi Millan, Jamie M Gallimore, Kamille Parungao, Jonathan Fong, Brian M Suzuki, Zhenze Jiang, Jun Isoe, Alberto A Rascón	PLoS Neglected Tropical Diseases	2025-02-06	Abstract
Tixagevimab/cilgavimab or placebo for COVID-19 in ACTIV-2: Safety, pharmacokinetics and neutralizing and anti-drug antibodies.	Rachel A Bender Ignacio, Kara W Chew, Carlee Moser, Judith S Currier, Joseph J Eron, Arzhang Cyrus Javan, Mark J Giganti, Justin Ritz, Michael Gibbs, Hervé Tchouakam Kouekam, Mark T Esser, Eric S Daar, Manish Choudhary, Rinki Deo, Courtney V Fletcher, Jonathan Z Li, Michael D Hughes, Davey Smith, David Alain Wohl,	IScience	2025-02-04	Abstract
Chronic conditions, COVID-19 vaccination, and institutional trust among Hispanic/Latinx communities in San Diego, California.	Samantha Streuli, Argentina E Servin, Linda Salgin, Fatima A Muñoz, Davey M Smith, Jamila K Stockman, Sophie E O'Bryan, Daniel Ramirez, Cynthia James-Price, Britt Skaathun	Preventive Medicine	2025-02-03	Abstract
Adenosine deaminase and deoxyadenosine regulate intracellular immune response in .	Nicole D Wernet, Eillen Tecle, Mario Bardan Sarmiento, Cheng-Ju Kuo, Crystal B Chhan, Ian Baick, Lakshmi E Batachari, Latisha Franklin, Alice Herneisen, Gira Bhabha, Damian C Ekiert, Wendy Hanna-Rose, Emily R Troemel	IScience	2025-02-03	Abstract
Essential oils modulate virulence phenotypes in a multidrug-resistant pyomelanogenic Pseudomonas aeruginosa clinical isolate.	Jayalekshmi Haripriyan, Christy Rose Binu, Nitasha D Menon, Muralidharan Vanuopadath, Malavika B Hari, N Namitha, Kesiya Binoy, Anil Kumar, Bipin G Nair, Victor Nizet, Geetha B Kumar	Scientific Reports	2025-01-30	Abstract
Fatuamide A, a Hybrid PKS/NRPS Metallophore from a sp. Marine Cyanobacterium Collected in American Samoa.	Kelsey L Alexander, C Benjamin Naman, Arihiro Iwasaki, Alfonso Mangoni, Tiago Leao, Raphael Reher, Daniel Petras, Hyunwoo Kim, Eva Ternon, Eduardo J E Caro-Diaz, Evgenia Glukhov, Jana A Mitrevska, Nicole E Avalon, Brendan M Duggan, Lena Gerwick, William H Gerwick	Journal Of Natural Products	2025-01-29	Abstract
A human gut bacterium antagonizes neighboring bacteria by altering their protein-folding ability.	Bentley Lim, Jinghua Xu, Igor H Wierzbicki, Carlos G Gonzalez, Zhe Chen, David J Gonzalez, Xiang Gao, Andrew L Goodman	Cell Host & Microbe	2025-01-29	Abstract
Approach to Therapy for Chronic Pouchitis.	Maia Kayal, Brigid Boland	Annual Review Of Medicine	2025-01-27	Abstract
Repurposing Diflunisal as an Antivirulence Agent Against .	Daniel Sun, Nina M Haste, Josh Sun, Mateus Sá Magalhães Serafim, Anna Salvioni, Joshua Olson, Jason Cole, Cheryl Okumura, Richard L Gallo, George Sakoulas, Anthony J O'Donoghue, Mary E Hensler, Victor Nizet	Infectious Microbes & Diseases	2025-01-27	Abstract
Microbial Community Metabolism of Coral Reef Exometabolomes Broadens the Chemodiversity of Labile Dissolved Organic Matter.	Zachary A Quinlan, Craig E Nelson, Irina Koester, Daniel Petras, Louis-Felix Nothias, Jacqueline Comstock, Brandie M White, Lihini I Aluwihare, Barbara A Bailey, Craig A Carlson, Pieter C Dorrestein, Andreas F Haas, Linda Wegley Kelly	Environmental Microbiology	2025-01-27	Abstract
Vaccination with mRNA-encoded membrane-bound HIV Envelope trimer induces neutralizing antibodies in animal models.	Parham Ramezani-Rad, Christopher A Cottrell, Ester Marina-Zárate, Alessia Liguori, Elise Landais, Jonathan L Torres, Amber Myers, Jeong Hyun Lee, Sabyasachi Baboo, Claudia Flynn, Katherine McKenney, Eugenia Salcedo, Xiaoya Zhou, Oleksandr Kalyuzhniy, Erik Georgeson, Nicole Phelps, Danny Lu, Saman Eskandarzadeh, Sergey Menis, Michael Kubitz, Bettina Groschel, Nushin Alavi, Abigail M Jackson, Wen-Hsin Lee, Andy S Tran, Elana Ben-Akiva, Katarzyna Kaczmarek Michaels, Jolene K Diedrich, Chiamaka A Enemuo, Vanessa Lewis, Arpan Pradhan, Sudhir Pai Kasturi, Torben Schiffner, Jon M Steichen, Diane G Carnathan, Sunny Himansu, John R Yates, James C Paulson, Gabriel Ozorowski, Darrell J Irvine, Guido Silvestri, Devin Sok, Andrew B Ward, Shane Crotty, William R Schief	BioRxiv : The Preprint Server For Biology	2025-01-25	Abstract
Unraveling Mechanisms of Genetic Risks in Metabolic Dysfunction-Associated Steatotic Liver Diseases: A Pathway to Precision Medicine.	Xiang Zhang, Kyong-Mi Chang, Jun Yu, Rohit Loomba	Annual Review Of Pathology	2025-01-24	Abstract
Cyclosporine Treatment in Patients with Kawasaki Disease and Coronary Artery Aneurysms or Treatment Resistance.	Irene Bellicini, Emelia Bainto, Chisato Shimizu, Jane C Burns, Adriana H Tremoulet	The Journal Of Pediatrics	2025-01-24	Abstract
Enhanced suppression of by a three-phage cocktail: genomic insights and kinetic profiling.	Alisha N Monsibais, Olivia Tea, Pooja Ghatbale, Sage J B Dunham, Mirjam Zünd, Jennifer Phan, Karen Lam, McKenna Paulson, Natalie Tran, Diana S Suder, Alisha N Blanc, Cyril Samillano, Joy Suh, Hanna Atif, Ethan Vien, Ryan Nguyen, Allene Vo, Shane Gonen, David Pride, Katrine Whiteson	Antimicrobial Agents And Chemotherapy	2025-01-22	Abstract
Multi-omic signatures of host response associated with presence, type, and outcome of enterococcal bacteremia.	Charlie Bayne, Dominic McGrosso, Concepcion Sanchez, Leigh-Ana Rossitto, Maxwell Patterson, Carlos Gonzalez, Courtney Baus, Cecilia Volk, Haoqi Nina Zhao, Pieter Dorrestein, Victor Nizet, George Sakoulas, David J Gonzalez, Warren Rose	MSystems	2025-01-21	Abstract
The Choice of Viral Load End Point in Early Phase Trials of COVID-19 Treatments Aiming to Reduce 28-Day Hospitalization and/or Death.	Allyson Mateja, Eric Chu, Thomas A Murray, Carolyn T Bramante, Carlee Moser, Naomi Givens, Mazin Abdelghany, Chris Blair, Shuguang Chen, Prince Kumar Lat, Ofir Harari, Nicole L Kallewaard, Lisa Farmer Macpherson, David R Boulware, Clara Suñer, Oriol Mitjà, Stacey J Adam, Victor De Gruttola, Michael D Hughes, Daniel Rubin, Davey M Smith, Gail E Potter	The Journal Of Infectious Diseases	2025-01-19	Abstract
Role of Intestinal Microbiome in Potentiating Inflammation and Predicting Outcomes in Alcohol-Associated Cirrhosis.	Sidsel Støy, Bernd Schnabl	Gastroenterology Clinics Of North America	2025-01-18	Abstract
Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data.	Caitlin Guccione, Lucas Patel, Yoshihiko Tomofuji, Daniel McDonald, Antonio Gonzalez, Gregory D Sepich-Poore, Kyuto Sonehara, Mohsen Zakeri, Yang Chen, Amanda Hazel Dilmore, Neil Damle, Sergio E Baranzini, George Hightower, Teruaki Nakatsuji, Richard L Gallo, Ben Langmead, Yukinori Okada, Kit Curtius, Rob Knight	Nature Communications	2025-01-18	Abstract
A Pilot Study Exploring the Relationship Between Milk Composition and Microbial Capacity in Breastfed Infants.	Ashwana D Fricker, Kristija Sejane, Mina Desai, Michael W Snyder, Luis Duran, Rachel Mackelprang, Lars Bode, Michael G Ross, Gilberto E Flores	Nutrients	2025-01-18	Abstract
Design, Synthesis, and Unprecedented Interactions of Covalent Dipeptide-Based Inhibitors of SARS-CoV-2 Main Protease and Its Variants Displaying Potent Antiviral Activity.	Philipp Flury, Nadine Krüger, Katharina Sylvester, Julian Breidenbach, Ghazl Al Hamwi, Jingxin Qiao, Yan Chen, Cheila Rocha, Mateus Sá Magalhães Serafim, Elany Barbosa da Silva, Stefan Pöhlmann, Antti Poso, Thales Kronenberger, Katharina Rox, Anthony J O'Donoghue, Shengyong Yang, Norbert Sträter, Michael Gütschow, Stefan A Laufer, Christa E Müller, Thanigaimalai Pillaiyar	Journal Of Medicinal Chemistry	2025-01-15	Abstract
Discovery of robust and highly specific microbiome signatures of non-alcoholic fatty liver disease.	Emmanouil Nychas, Andrea Marfil-Sánchez, Xiuqiang Chen, Mohammad Mirhakkak, Huating Li, Weiping Jia, Aimin Xu, Henrik Bjørn Nielsen, Max Nieuwdorp, Rohit Loomba, Yueqiong Ni, Gianni Panagiotou	Microbiome	2025-01-14	Abstract
Pangenome mining of the Streptomyces genus redefines species' biosynthetic potential.	Omkar S Mohite, Tue S Jørgensen, Thomas J Booth, Pep Charusanti, Patrick V Phaneuf, Tilmann Weber, Bernhard O Palsson	Genome Biology	2025-01-14	Abstract
Inhalable biohybrid microrobots: a non-invasive approach for lung treatment.	Zhengxing Li, Zhongyuan Guo, Fangyu Zhang, Lei Sun, Hao Luan, Zheng Fang, Jeramy L Dedrick, Yichen Zhang, Christine Tang, Audrey Zhu, Yiyan Yu, Shichao Ding, Dan Wang, An-Yi Chang, Lu Yin, Lynn M Russell, Weiwei Gao, Ronnie H Fang, Liangfang Zhang, Joseph Wang	Nature Communications	2025-01-14	Abstract
T cells are necessary for development of PCOS reproductive symptoms in a letrozole-induced mouse model of PCOS.	Naveena Ujagar, Leandro M Velez, Gabriela De Robles, Christy Nguyen, Kiara Wiggins, Joshua Kim, Nandini Naidu, Julio Ayala Angulo, Alexander S Kauffman, Varykina G Thackray, Beata Banaszewska, Ewa Wysocka, Antoni Duleba, Marcus Seldin, Dequina Nicholas	BioRxiv : The Preprint Server For Biology	2025-01-13	Abstract
Sexual Networks and Behavioral Characteristics of HIV-Positive Male Military Members, Female Sex Workers, and Male Civilians.	Michael P Grillo, Karen Saylors, Bonnie R Tran, Nichelle Brown, Osika Tripathi, Jordan Killion, Carol Macera, Babacar Faye, Ernest C Chisoko, Mapoma Kabengele, Anthony M Mutombe, Cyrille F Djoko, Davey Smith, Antoine Chaillon	AIDS And Behavior	2025-01-13	Abstract
Erwinia phage Asesino is a nucleus-forming phage that lacks PhuZ.	Amy Prichard, Annika Sy, Justin Meyer, Elizabeth Villa, Joe Pogliano	Scientific Reports	2025-01-11	Abstract
2'-Fucosyllactose inhibits human norovirus replication in human intestinal enteroids.	Ketki Patil, B Vijayalakshmi Ayyar, Nicole M Hayes, Frederick H Neill, Lars Bode, Mary K Estes, Robert L Atmar, Sasirekha Ramani	Journal Of Virology	2025-01-10	Abstract
Medication use is associated with distinct microbial features in anxiety and depression.	Amanda Hazel Dilmore, Rayus Kuplicki, Daniel McDonald, Megha Kumar, Mehrbod Estaki, Nicholas Youngblut, Alexander Tyakht, Gail Ackermann, Colette Blach, Siamak MahmoudianDehkordi, Boadie W Dunlop, Sudeepa Bhattacharyya, Salvador Guinjoan, Pooja Mandaviya, Ruth E Ley, Rima Kaddaruh-Dauok, Martin P Paulus, Rob Knight,	Molecular Psychiatry	2025-01-10	Abstract
Design, optimization, and inference of biphasic decay of infectious virus particles.	Jérémy Seurat, Krista R Gerbino, Justin R Meyer, Joshua M Borin, Joshua S Weitz	Journal Of Theoretical Biology	2025-01-10	Abstract
Biomarkers.	M Arthur Moseley, Oliver Fiehn, Pieter Dorrestein, Tuulia Hyotylainen, Matej Oresic, David Wishart, Nina Zhao, Rima F Kaddurah-Daouk,	Alzheimer's & Dementia : The Journal Of The Alzheimer's Association	2025-01-09	Abstract
Biomarkers.	Jennifer S Labus, Kwangsik Nho, Simone Zuffa, Richa Batra, Michael Meehan, Kiana West, Jasmine Zemlin, Andres Mauricio Caraballo-Rodriguez, Pieter Dorrestein, Rima Kaddurah-Daouk,	Alzheimer's & Dementia : The Journal Of The Alzheimer's Association	2025-01-09	Abstract
Biomarkers.	Haoqi Nina Zhao, Ipsita Mohanty, Rima F Kaddurah-Daouk, , Pieter Dorrestein	Alzheimer's & Dementia : The Journal Of The Alzheimer's Association	2025-01-09	Abstract
Public Health.	Annalise Schweickart, Kevin Huynh, Richa Batra, Bryan J Neth, Cameron Martino, Amanda H Dilmore, Corey Giles, Tingting Wang, Natalie A Mellett, Thy Duong, Liat Shenhav, Anru Zhang, Pixu Shi, Naama Karu, Kiana West, Jasmine Zemlin, Gibraan Rahman, Morgan Panitchpakdi, Michael Meehan, Kelly C Weldon, Thomas C Register, Matthias Arnold, Peter J Meikle, Leyla Schimmel, Kaj Blennow, Henrik Zetterberg, Colette Blach, Pieter Dorrestein, Rob Knight, Jan Krumsiek, Rima Kaddurah-Daouk, , Suzanne Craft	Alzheimer's & Dementia : The Journal Of The Alzheimer's Association	2025-01-09	Abstract
Biomarkers.	Jea Woo Kang, Lora A Khatib, Amanda H Dilmore, Margo B Heston, Tyler K Ulland, Sterling C Johnson, Sanjay Asthana, Cynthia M Carlsson, Nathaniel A Chin, Erin M Jonaitis, Kaj Blennow, Henrik Zetterberg, Rob Knight, Rima Kaddurah-Daouk, Federico E Rey, Barbara B Bendlin,	Alzheimer's & Dementia : The Journal Of The Alzheimer's Association	2025-01-09	Abstract
Biomarkers.	Darby Peter, Margo B Heston, Qilin Hong, Puja Agarwal, Tyler K Ulland, Sterling C Johnson, Sanjay Asthana, Rob Knight, Rima Kaddurah-Daouk, Henrik Zetterberg, Kaj Blennow, Federico E Rey, Barbara B Bendlin	Alzheimer's & Dementia : The Journal Of The Alzheimer's Association	2025-01-09	Abstract
Biomarkers.	Darby Peter, Margo B Heston, Erin M Jonaitis, Nathaniel A Chin, Sterling C Johnson, Sanjay Asthana, Cynthia M Carlsson, Rob Knight, Rima Kaddurah-Daouk, Kaj Blennow, Henrik Zetterberg, Federico E Rey, Barbara B Bendlin	Alzheimer's & Dementia : The Journal Of The Alzheimer's Association	2025-01-09	Abstract
Biomarkers.	Jea Woo Kang, Lora A Khatib, Amanda H Dilmore, Margo B Heston, Tyler K Ulland, Sterling C Johnson, Sanjay Asthana, Cynthia M Carlsson, Nathaniel A Chin, Rob Knight, Rima Kaddurah-Daouk, Federico E Rey, Barbara B Bendlin,	Alzheimer's & Dementia : The Journal Of The Alzheimer's Association	2025-01-09	Abstract
Biomarkers.	Jennifer S Labus, Margo B Heston, Emeran A Mayer, Ipsita Mohanty, Thai Tran, Kevin Huynh, Arpana Gupta, Federico E Rey, Antonio González, Amanda H Dilmore, Rob Knight, Rima Kaddurah-Daouk, Barbara B Bendlin,	Alzheimer's & Dementia : The Journal Of The Alzheimer's Association	2025-01-09	Abstract
Biomarkers.	Natalia Palacios, Scot Gordon, Tao Wang, Curtis Huttenhower, Hector M Gonzalez, Rob Knight, Charles Decarli, Martha L Daviglus, Melissa Lamar, Wassim Tarraf, Jianwen Cai, Robbie Burk, Quibin Qi, Robert C Kaplan	Alzheimer's & Dementia : The Journal Of The Alzheimer's Association	2025-01-09	Abstract
Global Epidemiology of Alcohol-Related Liver Disease, Liver Cancer, and Alcohol Use Disorder, 2000-2021.	Pojsakorn Danpanichkul, Luis Antonio Díaz, Kanokphong Suparan, Primrose Tothanarungroj, Supapitch Sirimangklanurak, Thanida Auttapracha, Hanna L Blaney, Banthoon Sukphutanan, Yanfang Pang, Siwanart Kongarin, Francisco Idalsoaga, Eduardo Fuentes-López, Lorenzo Leggio, Mazen Noureddin, Trenton M White, Alexandre Louvet, Philippe Mathurin, Rohit Loomba, Patrick S Kamath, Jürgen Rehm, Jeffrey V Lazarus, Karn Wijarnpreecha, Juan Pablo Arab	Clinical And Molecular Hepatology	2025-01-09	Abstract
RNA control of reverse transcription in a diversity-generating retroelement.	Sumit Handa, Tapan Biswas, Jeet Chakraborty, Gourisankar Ghosh, Blair G Paul, Partho Ghosh	Nature	2025-01-08	Abstract
Enhanced Killing of Methicillin-Resistant Staphylococcus aureus with Ceftaroline or Vancomycin in Combination with Carbapenems.	Allen Jankeel, Gabriel Pérez-Parra, Anuj K Khetarpal, Ivan A Alvarado, Victor Nizet, George Sakoulas, Erlinda R Ulloa	The Journal Of Infectious Diseases	2025-01-08	Abstract
A genome-scale metabolic model for the denitrifying bacterium Thauera sp. MZ1T accurately predicts degradation of pollutants and production of polymers.	Diego Tec-Campos, Juan D Tibocha-Bonilla, Celina Jiang, Anurag Passi, Deepan Thiruppathy, Cristal Zuñiga, Camila Posadas, Alejandro Zepeda, Karsten Zengler	PLoS Computational Biology	2025-01-07	Abstract
.	Srishti Saha, Bernd Schnabl	Expert Review Of Gastroenterology & Hepatology	2025-01-06	Abstract
A multiplex method for rapidly identifying viral protease inhibitors.	Seo Jung Hong, Samuel J Resnick, Sho Iketani, Ji Won Cha, Benjamin Alexander Albert, Christopher T Fazekas, Ching-Wen Chang, Hengrui Liu, Shlomi Dagan, Michael R Abagyan, Pavla Fajtová, Bruce Culbertson, Brooklyn Brace, Eswar R Reddem, Farhad Forouhar, J Fraser Glickman, James M Balkovec, Brent R Stockwell, Lawrence Shapiro, Anthony J O'Donoghue, Yosef Sabo, Joel S Freundlich, David D Ho, Alejandro Chavez	Molecular Systems Biology	2025-01-06	Abstract
A Similar Mutation in the AAUU-Rich Elements of the Mouse TNF Gene Results in a Distinct Ileocolitic Phenotype: A New Strain of TNF-Overexpressing Mice.	Amruth Chilukuri, Margaret Kim, Taniya Mitra, John M Gubatan, Josef Urrete, Leo D Saxon, Amber Ablack, Zbigniew Mikulski, Katarzyna Dobaczewska, Zining Shen, Mary Keir, Tangsheng Yi, Prabhdeep Kaur, Patricia Oliveira, Jessica Murillo-Saich, Eric Y Chang, Calen A Steiner, Paul Jedlicka, Mónica Guma, Jesús Rivera-Nieves	Inflammatory Bowel Diseases	2025-01-04	Abstract
Tofacitinib Mitigates the Increased SARS-CoV-2 Infection Susceptibility Caused by an IBD Risk Variant in the PTPN2 Gene.	Marianne R Spalinger, Golshid Sanati, Pritha Chatterjee, Rong Hai, Jiang Li, Alina N Santos, Tara M Nordgren, Michel L Tremblay, Lars Eckmann, Elaine Hanson, Michael Scharl, Xiwei Wu, Brigid S Boland, Declan F McCole	Cellular And Molecular Gastroenterology And Hepatology	2025-01-03	Abstract
Evidence for microbially-mediated tradeoffs between growth and defense throughout coral evolution.	Hannah E Epstein, Tanya Brown, Ayọmikun O Akinrinade, Ryan McMinds, F Joseph Pollock, Dylan Sonett, Styles Smith, David G Bourne, Carolina S Carpenter, Rob Knight, Bette L Willis, Mónica Medina, Joleah B Lamb, Rebecca Vega Thurber, Jesse R Zaneveld	Animal Microbiome	2025-01-03	Abstract
Innate immune cells link dietary cues to normal and abnormal metabolic regulation.	Peng Zhang, Kosuke Watari, Michael Karin	Nature Immunology	2025-01-02	Abstract
Deciphering metabolic differentiation during Bacillus subtilis sporulation.	Juan D Tibocha-Bonilla, Jelani Lyda, Eammon Riley, Kit Pogliano, Karsten Zengler	Nature Communications	2025-01-02	Abstract
System vaccinology analysis of predictors and mechanisms of antibody response durability to multiple vaccines in humans.	Mario Cortese, Thomas Hagan, Nadine Rouphael, Sheng-Yang Wu, Xia Xie, Dmitri Kazmin, Florian Wimmers, Shakti Gupta, Robbert van der Most, Margherita Coccia, Prabhu S Aranuchalam, Helder I Nakaya, Yating Wang, Elizabeth Coyle, Shu Horiuchi, Hanchih Wu, Mary Bower, Aneesh Mehta, Clifford Gunthel, Steve E Bosinger, Yuri Kotliarov, Foo Cheung, Pamela L Schwartzberg, Ronald N Germain, John Tsang, Shuzhao Li, Randy Albrecht, Hideki Ueno, Shankar Subramaniam, Mark J Mulligan, Surender Khurana, Hana Golding, Bali Pulendran	Nature Immunology	2025-01-02	Abstract
FBP1 controls liver cancer evolution from senescent MASH hepatocytes.	Li Gu, Yahui Zhu, Shuvro P Nandi, Maiya Lee, Kosuke Watari, Breanna Bareng, Masafumi Ohira, Yuxiao Liu, Sadatsugu Sakane, Rodrigo Carlessi, Consuelo Sauceda, Debanjan Dhar, Souradipta Ganguly, Mojgan Hosseini, Marcos G Teneche, Peter D Adams, David J Gonzalez, Tatiana Kisseleva, , Janina E E Tirnitz-Parker, M Celeste Simon, Ludmil B Alexandrov, Michael Karin	Nature	2025-01-01	Abstract
Decomposition of the pangenome matrix reveals a structure in gene distribution in the species.	Siddharth M Chauhan, Omid Ardalani, Jason C Hyun, Jonathan M Monk, Patrick V Phaneuf, Bernhard O Palsson	MSphere	2024-12-31	Abstract
Gut microbiota in treating inflammatory digestive diseases: Current challenges and therapeutic opportunities.	Yongpeng Shi, Zeran Chen, Tingyu Fang, Xingyao Chen, Youpeng Deng, Hao Qin, Min Lian, Juntao Shen, Yuru Zong, Huikuan Chu, Constanze Hoebinger, Hao Guo, Zhongshang Yuan, Jie Zheng, Yongjian Zhou, Yue Pan, Beatriz G Mendes, Sonja Lang, Tim Hendrikx, Suling Zeng, Hailong Cao, Ling Yang, Lianmin Chen, Peng Chen, Lei Dai, Hua Wang, Shi Yin, Shu Zhu, Xiong Ma, Bernd Schnabl, Hanqing Chen, Yi Duan	IMeta	2024-12-31	Abstract
Modulating the human gut microbiome and health markers through kombucha consumption: a controlled clinical study.	Gertrude Ecklu-Mensah, Rachel Miller, Maria Gjerstad Maseng, Vienna Hawes, Denise Hinz, Cheryl Kim, Jack A Gilbert	Scientific Reports	2024-12-30	Abstract
Revealing systematic changes in the transcriptome during the transition from exponential growth to stationary phase.	Hyun Gyu Lim, Ye Gao, Kevin Rychel, Cameron Lamoureux, Xuwen A Lou, Bernhard O Palsson	MSystems	2024-12-26	Abstract
TEMPTED: time-informed dimensionality reduction for longitudinal microbiome studies.	Pixu Shi, Cameron Martino, Rungang Han, Stefan Janssen, Gregory Buck, Myrna Serrano, Kouros Owzar, Rob Knight, Liat Shenhav, Anru R Zhang	Genome Biology	2024-12-19	Abstract
resensitization of multidrug-resistant clinical isolates of and through phage-antibiotic synergy.	Pooja Ghatbale, Govind Prasad Sah, Sage Dunham, Ethan Khong, Alisha Blanc, Alisha Monsibais, Andrew Garcia, Robert T Schooley, Ana G Cobián Güemes, Katrine Whiteson, David T Pride	Antimicrobial Agents And Chemotherapy	2024-12-19	Abstract
Soil microbiome interventions for carbon sequestration and climate mitigation.	Gwyn A Beattie, Anna Edlund, Nwadiuto Esiobu, Jack Gilbert, Mette Haubjerg Nicolaisen, Janet K Jansson, Paul Jensen, Marco Keiluweit, Jay T Lennon, Jennifer Martiny, Vanessa R Minnis, Dianne Newman, Raquel Peixoto, Christopher Schadt, Jan Roelof van der Meer	MSystems	2024-12-18	Abstract
Pathobiont-driven antibody sialylation through IL-10 undermines vaccination.	Chih-Ming Tsai, Irshad A Hajam, J R Caldera, Austin Wt Chiang, Cesia Gonzalez, Xin Du, Biswa Choudhruy, Haining Li, Emi Suzuki, Fatemeh Askarian, Ty'Tianna Clark, Brian Lin, Igor H Wierzbicki, Angelica M Riestra, Douglas J Conrad, David J Gonzalez, Victor Nizet, Nathan E Lewis, George Y Liu	The Journal Of Clinical Investigation	2024-12-16	Abstract
Immunization but not natural infection of horses results in antibody activity against the S protein of Streptococcus equi subsp equi.	Noah D Cohen, Emma V Hughes, Charlie Bayne, Ellen Ruth A Morris, Jocelyne M Bray, Kerstin K Landrock, Danielle M Gonzales, Reagan M Baker, Rafaela L Klein, Wen Liu, Rebecca M Legere, S Garrett Wehmeyer, Angela I Bordin, Igor H Wierzbicki, David J Gonzalez	American Journal Of Veterinary Research	2024-12-16	Abstract
Antibiotic-perturbed microbiota and the role of probiotics.	Hania Szajewska, Karen P Scott, Tim de Meij, Sofia K Forslund-Startceva, Rob Knight, Omry Koren, Paul Little, Bradley C Johnston, Jan Łukasik, Jotham Suez, Daniel J Tancredi, Mary Ellen Sanders	Nature Reviews. Gastroenterology & Hepatology	2024-12-11	Abstract
Bactericidal efficacy of low dose gaseous ozone against clinically relevant multidrug-resistant bacteria.	Bob Banerjee, Christine Thompson, Victor Nizet, Elisabet Bjånes	Frontiers In Microbiology	2024-12-11	Abstract
Pyrazinyl-Substituted Aminoazoles as Covalent Inhibitors of Thrombin: Synthesis, Structure, and Anticoagulant Properties.	Lukas Imberg, Alena I Siutkina, Catharina Erbacher, Judith Schmidt, Darius F Broekmans, Ruzanna A Ovsepyan, Constantin G Daniliuc, Ellen Gonçalves de Oliveira, Mateus Sá Magalhães Serafim, Anthony J O'Donoghue, Thanigaimalai Pillaiyar, Mikhail A Panteleev, Antti Poso, Svetlana A Kalinina, Marcel Bermúdez, Katrin Nekipelov, Gerd Bendas, Uwe Karst, Dmitrii V Kalinin	ACS Pharmacology & Translational Science	2024-12-11	Abstract
Correction to: Genetic Risk, Dysbiosis, and Treatment Stratification Using Host Genome and Gut Microbiome in Inflammatory Bowel Disease.	Ahmed Moustafa, Weizhong Li, Ericka L Anderson, Emily H MWong, Parambir S Dulai, William J Sandborn, William Biggs, Shibu Yooseph, Marcus B Jones, Craig J Venter, Karen E Nelson, John T Chang, Amalio Telenti, Brigid S Boland	Clinical And Translational Gastroenterology	2024-12-10	Abstract
HBV Remodels PP2A Complexes to Rewire Kinase Signaling in Hepatocellular Carcinoma.	Rigney E Turnham, Adriana Pitea, Gwendolyn M Jang, Zhong Xu, Huat Chye Lim, Alex L Choi, John Von Dollen, Rebecca S Levin, James T Webber, Elizabeth McCarthy, Junjie Hu, Xiaolei Li, Li Che, Ananya Singh, Alex Yoon, Gary Chan, Robin K Kelley, Danielle L Swaney, Wei Zhang, Sourav Bandyopadhyay, Fabian J Theis, Manon Eckhardt, Xin Chen, Kevan M Shokat, Trey Ideker, Nevan J Krogan, John D Gordan	Cancer Research	2024-12-09	Abstract
Rapid and accurate testing for urinary tract infection: new clothes for the emperor.	Robert B Moreland, Linda Brubaker, Lana Tinawi, Alan J Wolfe	Clinical Microbiology Reviews	2024-12-06	Abstract
Anthelmintic Treatment Reveals Sex-Dependent Worm-Gut Microbiota Interactions.	Kate A Sabey, Avina Castro, Se Jin Song, Rob Knight, Vanessa O Ezenwa	Parasite Immunology	2024-12-05	Abstract
Clinical perspectives on the value of testing for and mutations in advanced NSCLC.	Michelle Shiller, Melissa Johnson, Robert Auber, Sandip Pravin Patel	Frontiers In Oncology	2024-12-05	Abstract
Antiretroviral Drugs for Treatment and Prevention of HIV in Adults: 2024 Recommendations of the International Antiviral Society-USA Panel.	Rajesh T Gandhi, Raphael J Landovitz, Paul E Sax, Davey M Smith, Sandra A Springer, Huldrych F Günthard, Melanie A Thompson, Roger J Bedimo, Constance A Benson, Susan P Buchbinder, Brenda E Crabtree-Ramirez, Carlos Del Rio, Ellen F Eaton, Joseph J Eron, Jennifer F Hoy, Clara Lehmann, Jean-Michel Molina, Donna M Jacobsen, Michael S Saag	JAMA	2024-12-01	Abstract
Inferring strain-level mutational drivers of phage-bacteria interaction phenotypes arising during coevolutionary dynamics.	Adriana Lucia-Sanz, Shengyun Peng, Chung Yin Joey Leung, Animesh Gupta, Justin R Meyer, Joshua S Weitz	Virus Evolution	2024-11-29	Abstract
Perspective: Current Scientific Evidence and Research Strategies in the Role of Almonds in Cardiometabolic Health.	Paula R Trumbo, Jamy Ard, France Bellisle, Adam Drewnowski, Jack A Gilbert, Ronald Kleinman, Anoop Misra, John Sievenpiper, Maha Tahiri, Karol E Watson, James Hill	Current Developments In Nutrition	2024-11-28	Abstract
Fostering healthy cognitive ageing in people living with HIV.	Lucette A Cysique, Jules Levin, Chris Howard, Jeff Taylor, John Rule, Jane Costello, Jane Bruning, Priscilla Njeri, Amy B Mullens, Edwina Wright, Hetta Gouse, Kirstie Daken, Mattia Trunfio, Htein Linn Aung, Reuben N Robbins, Christopher M Ferraris, Jose A Muñoz-Moreno, Steven P Woods, David J Moore, Christopher Power, Pui Li Wong, Kejal Hasmukharay, Primrose Nyamayaro, Jaime Vera, Reena Rajasuriar, Robert K Heaton, Karl Goodkin, Scott Letendre, Ronald J Ellis, Bruce J Brew, Sean B Rourke,	The Lancet. HIV	2024-11-27	Abstract
Interleukin-2-secreting T helper cells promote extra-follicular B cell maturation via intrinsic regulation of a B cell mTOR-AKT-Blimp-1 axis.	Caterina E Faliti, Maria Mesina, Jinyong Choi, Simon Bélanger, Monique A Marshall, Christopher M Tipton, Sakeenah Hicks, Prashanti Chappa, Maria A Cardenas, Mohamed Abdel-Hakeem, Theresa C Thinnes, Christopher Cottrell, Christopher D Scharer, William R Schief, David Nemazee, Matthew C Woodruff, John M Lindner, Ignacio Sanz, Shane Crotty	Immunity	2024-11-26	Abstract
Tamm-Horsfall protein augments neutrophil NETosis during urinary tract infection.	Vicki Mercado-Evans, Holly Branthoover, Claude Chew, Camille Serchejian, Alexander B Saltzman, Marlyd E Mejia, Jacob J Zulk, Ingrid Cornax, Victor Nizet, Kathryn A Patras	JCI Insight	2024-11-26	Abstract
Carmaphycin B-Based Proteasome Inhibitors to Treat Human African Trypanosomiasis: Structure-Activity Relationship and Efficacy.	Lawrence J Liu, Karol R Francisco, Yujie Uli Sun, Mateus Sá Magalhães Serafim, Dilini K Amarasinghe, Thaiz R Teixeira, Bobby Lucero, Thales Kronenberger, Waad Elsayed, Hala Elwakeel, Momen Al-Hindy, Jehad Almaliti, William H Gerwick, Anthony J O'Donoghue, Conor R Caffrey	ACS Infectious Diseases	2024-11-26	Abstract
Diverse priming outcomes under conditions of very rare precursor B cells.	Patrick J Madden, Ester Marina-Zárate, Kristen A Rodrigues, Jon M Steichen, Monolina Shil, Kaiyuan Ni, Katarzyna Kaczmarek Michaels, Laura Maiorino, Amit A Upadhyay, Swati Saha, Arpan Pradhan, Oleksandr Kalyuzhiny, Alessia Liguori, Paul G Lopez, Ivy Phung, Nicole Phelps, Erik Georgeson, Nushin Alavi, Michael Kubitz, Danny Lu, Saman Eskandarzadeh, Amanda Metz, Oscar L Rodriguez, Kaitlyn Shields, Steven Schultze, Melissa L Smith, Brandon S Healy, Deuk Lim, Vanessa R Lewis, Elana Ben-Akiva, William Pinney, Justin Gregory, Shuhao Xiao, Diane G Carnathan, Sudhir Pai Kasturi, Corey T Watson, Steven E Bosinger, Guido Silvestri, William R Schief, Darrell J Irvine, Shane Crotty	BioRxiv : The Preprint Server For Biology	2024-11-25	Abstract
Heterozygous BTNL8 variants in individuals with multisystem inflammatory syndrome in children (MIS-C).	Evangelos Bellos, Dilys Santillo, Pierre Vantourout, Heather R Jackson, Amedine Duret, Henry Hearn, Yoann Seeleuthner, Estelle Talouarn, Stephanie Hodeib, Harsita Patel, Oliver Powell, Sophya Yeoh, Sobia Mustafa, Dominic Habgood-Coote, Samuel Nichols, Leire Estramiana Elorrieta, Giselle D'Souza, Victoria J Wright, Diego Estrada-Rivadeneyra, Adriana H Tremoulet, Kirsten B Dummer, Stejara A Netea, Antonio Condino-Neto, Yu Lung Lau, Esmeralda Núñez Cuadros, Julie Toubiana, Marisol Holanda Pena, Frédéric Rieux-Laucat, Charles-Edouard Luyt, Filomeen Haerynck, Jean Louis Mège, Samya Chakravorty, Elie Haddad, Marie-Paule Morin, Özge Metin Akcan, Sevgi Keles, Melike Emiroglu, Gulsum Alkan, Sadiye Kübra Tüter Öz, Sefika Elmas Bozdemir, Guillaume Morelle, Alla Volokha, Yasemin Kendir-Demirkol, Betul Sözeri, Taner Coskuner, Aysun Yahsi, Belgin Gulhan, Saliha Kanik-Yuksek, Gulsum Iclal Bayhan, Aslinur Ozkaya-Parlakay, Osman Yesilbas, Nevin Hatipoglu, Tayfun Ozcelik, Alexandre Belot, Emilie Chopin, Vincent Barlogis, Esra Sevketoglu, Emin Menentoglu, Zeynep Gokce Gayretli Aydin, Marketa Bloomfield, Suzan A AlKhater, Cyril Cyrus, Yuriy Stepanovskiy, Anastasiia Bondarenko, Fatma Nur Öz, Meltem Polat, Jiří Fremuth, Jan Lebl, Amyrath Geraldo, Emmanuelle Jouanguy, , , , Michael J Carter, Paul Wellman, Mark Peters, Rebeca Pérez de Diego, Lindsey Ann Edwards, Christopher Chiu, Mahdad Noursadeghi, Alexandre Bolze, Chisato Shimizu, Myrsini Kaforou, Melissa Shea Hamilton, Jethro A Herberg, Erica G Schmitt, Agusti Rodriguez-Palmero, Aurora Pujol, Jihoon Kim, Aurélie Cobat, Laurent Abel, Shen-Ying Zhang, Jean-Laurent Casanova, Taco W Kuijpers, Jane C Burns, Michael Levin, Adrian C Hayday, Vanessa Sancho-Shimizu	The Journal Of Experimental Medicine	2024-11-22	Abstract
Pattern-Based Genome Mining Guides Discovery of the Antibiotic Indanopyrrole A from a Marine Streptomycete.	Douglas Sweeney, Alexander Bogdanov, Alexander B Chase, Gabriel Castro-Falcón, Alma Trinidad-Javier, Samira Dahesh, Victor Nizet, Paul R Jensen	Journal Of Natural Products	2024-11-22	Abstract
Community utilization of a co-created COVID-19 testing program in a US/Mexico border community.	Breanna J Reyes, Stephenie Tinoco Calvillo, Arleth A Escoto, Angel Lomeli, Maria Linda Burola, Luis Gay, Ariel Cohen, Isabel Villegas, Linda Salgin, Kelli L Cain, Dylan Pilz, Paul Watson, Bill Oswald, Cesar Arevalo, Jessica Sanchez, Marjorie Richardson, Jennifer Nelson, Pricilla Villanueva, Garrett McGaugh, Ilya Zaslavsky, Robert H Tukey, Nicole A Stadnick, Borsika A Rabin, Louise C Laurent, Marva Seifert	BMC Public Health	2024-11-18	Abstract
Phase I study of a recombinant attenuated oncolytic virus, MEDI5395 (NDV-GM-CSF), administered systemically in combination with durvalumab in patients with advanced solid tumors.	Diwakar Davar, Benedito A Carneiro, Grace K Dy, Siddharth Sheth, Mitesh J Borad, Kevin J Harrington, Sandip P Patel, Evanthia Galanis, Adel Samson, Sonia Agrawal, Zhongying Chen, Chunling Fan, Maozhen Gong, Jenny Burton, Eric Tu, Nicholas Durham, Kevin Laubscher, Fernanda Arnaldez, Dmitriy Zamarin	Journal For Immunotherapy Of Cancer	2024-11-17	Abstract
Possible Missing Sources of Atmospheric Glyoxal Part II: Oxidation of Toluene Derived from the Primary Production of Marine Microorganisms.	Renee T Williams, Annika Caspers-Brown, Jennifer Michaud, Natalie Stevens, Michael Meehan, Camille M Sultana, Christopher Lee, Francesca Malfatti, Yanyan Zhou, Farooq Azam, Kimberly A Prather, Pieter Dorrestein, Michael D Burkart, Robert S Pomeroy	Metabolites	2024-11-16	Abstract
Distinct pathways for evolution of enhanced receptor binding and cell entry in SARS-like bat coronaviruses.	Alexandra L Tse, Cory M Acreman, Inna Ricardo-Lax, Jacob Berrigan, Gorka Lasso, Toheeb Balogun, Fiona L Kearns, Lorenzo Casalino, Georgia L McClain, Amartya Mudry Chandran, Charlotte Lemeunier, Rommie E Amaro, Charles M Rice, Rohit K Jangra, Jason S McLellan, Kartik Chandran, Emily Happy Miller	PLoS Pathogens	2024-11-15	Abstract
Development of an Antiviral Medicinal Plant and Natural Product Database (avMpNp Database) from Biodiversity.	Daniela Quadros de Azevedo, João Vinícius Viera Nóia, Yasmim Carla M Ribeiro, Raphael Alves Dos Reis, Paulo Henrique Otoni Ribeiro, Gustavo Almeida Moura, Pamela Mendes, Ana Beatriz Barbosa de Souza, Sofia Carpini Mermejo, Mateus Sá Magalhães Serafim, Thaís Helena Maciel Fernandes, Anthony J O'Donoghue, Alessandra C Faria Aguiar Campos, Sérgio Vale Aguiar Campos, Vinícius Gonçalves Maltarollo, Rachel Oliveira Castilho	Chemistry & Biodiversity	2024-11-15	Abstract
Physiological cost of antibiotic resistance: Insights from a ribosome variant in bacteria.	Eun Chae Moon, Tushar Modi, Dong-Yeon D Lee, Danis Yangaliev, Jordi Garcia-Ojalvo, S Banu Ozkan, Gürol M Süel	Science Advances	2024-11-15	Abstract
Intrinsically robust and scalable biofilm segmentation under diverse physical growth conditions.	Jian-Geng Chiou, Todd Kwang-Tao Chou, Jordi Garcia-Ojalvo, Gürol M Süel	IScience	2024-11-13	Abstract
Author Correction: Whole-body metabolic modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimer's disease.	Filippo Martinelli, Almut Heinken, Ann-Kristin Henning, Maria A Ulmer, Tim Hensen, Antonio González, Matthias Arnold, Sanjay Asthana, Kathrin Budde, Corinne D Engelman, Mehrbod Estaki, Hans-Jörgen Grabe, Margo B Heston, Sterling Johnson, Gabi Kastenmüller, Cameron Martino, Daniel McDonald, Federico E Rey, Ingo Kilimann, Olive Peters, Xiao Wang, Eike Jakob Spruth, Anja Schneider, Klaus Fliessbach, Jens Wiltfang, Niels Hansen, WenzelGlanz, Katharina Buerger, Daniel Janowitz, Christoph Laske, Matthias H Munk, Annika Spottke, Nina Roy, Matthias Nauck, Stefan Teipel, Rob Knight, Rima F Kaddurah-Daouk, Barbara B Bendlin, Johannes Hertel, Ines Thiele	Scientific Reports	2024-11-12	Abstract
Comparative gut microbiome research through the lens of ecology: theoretical considerations and best practices.	Samuel Degregori, Xiaolin Wang, Akhil Kommala, Noah Schulhof, Sadaf Moradi, Allison MacDonald, Kaitlin Eblen, Sophia Jukovich, Emma Smith, Emily Kelleher, Kota Suzuki, Zoey Hall, Rob Knight, Katherine Ryan Amato	Biological Reviews Of The Cambridge Philosophical Society	2024-11-12	Abstract
Diversity of transcriptional regulatory adaptation in E. coli.	Christopher Dalldorf, Ying Hefner, Richard Szubin, Josefin Johnsen, Elsayed Mohamed, Gaoyuan Li, Jayanth Krishnan, Adam M Feist, Bernhard O Palsson, Daniel C Zielinski	Molecular Biology And Evolution	2024-11-12	Abstract
Microbial solutions must be deployed against climate catastrophe.	Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert	Nature Reviews. Microbiology	2024-11-11	Abstract
Microbial solutions must be deployed against climate catastrophe.	Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert	Nature Microbiology	2024-11-11	Abstract
Microbial solutions must be deployed against climate catastrophe.	Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert	Npj Biodiversity	2024-11-11	Abstract
Microbial solutions must be deployed against climate catastrophe.	Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert	Communications Biology	2024-11-11	Abstract
Microbial solutions must be deployed against climate catastrophe.	Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert	NPJ Biofilms And Microbiomes	2024-11-11	Abstract
Microbial solutions must be deployed against climate catastrophe.	Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert	Nature Communications	2024-11-11	Abstract
Microbial solutions must be deployed against climate catastrophe.	Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert	MSystems	2024-11-11	Abstract
Faecal Cytolysin is Associated With Worse Survival in Patients With Primary Sclerosing Cholangitis.	Burcin Özdirik, Hilmar Berger, Fernanda Raya Tonetti, Noemí Cabré, Nicole Treichel, Thomas Clavel, Frank Tacke, Michael Sigal, Bernd Schnabl	Liver International : Official Journal Of The International Association For The Study Of The Liver	2024-11-06	Abstract
Multiplatform metabolomic interlaboratory study of a whole human stool candidate reference material from omnivore and vegan donors.	Abraham Kuri Cruz, Marina Amaral Alves, Thorkell Andresson, Amanda L Bayless, Kent J Bloodsworth, John A Bowden, Kevin Bullock, Meagan C Burnet, Fausto Carnevale Neto, Angelina Choy, Clary B Clish, Sneha P Couvillion, Raquel Cumeras, Lucas Dailey, Guido Dallmann, W Clay Davis, Amy A Deik, Alex M Dickens, Danijel Djukovic, Pieter C Dorrestein, Josie G Eder, Oliver Fiehn, Roberto Flores, Helen Gika, Kehau A Hagiwara, Tuan Hai Pham, James J Harynuk, Juan J Aristizabal-Henao, David W Hoyt, Focant Jean-François, Matilda Kråkström, Amit Kumar, Jennifer E Kyle, Santosh Lamichhane, Yuan Li, Seo Lin Nam, Rupasri Mandal, A Paulina de la Mata, Michael J Meehan, Thomas Meikopoulos, Thomas O Metz, Thomai Mouskeftara, Nathalie Munoz, G A Nagana Gowda, Matej Orešic, Morgan Panitchpakdi, Stefanuto Pierre-Hugues, Daniel Raftery, Blake Rushing, Tracey Schock, Harold Seifried, Stephanie Servetas, Tong Shen, Susan Sumner, Kieran S Tarazona Carrillo, Dejong Thibaut, Jesse B Trejo, Lieven Van Meulebroek, Lynn Vanhaecke, Christina Virgiliou, Kelly C Weldon, David S Wishart, Lu Zhang, Jiamin Zheng, Sandra Da Silva	Metabolomics : Official Journal Of The Metabolomic Society	2024-11-04	Abstract
Digital PCR in Virology: Current Applications and Future Perspectives.	David Gleerup, Wim Trypsteen, Stephanie I Fraley, Ward De Spiegelaere	Molecular Diagnosis & Therapy	2024-11-02	Abstract
Microbiome divergence of marine gastropod species separated by the Isthmus of Panama.	Alexander T Neu, Mark E Torchin, Eric E Allen, Kaustuv Roy	Applied And Environmental Microbiology	2024-10-31	Abstract
Gut and oral microbial compositional differences in women with breast cancer, women with ductal carcinoma , and healthy women.	Emma McCune, Anukriti Sharma, Breanna Johnson, Tess O'Meara, Sarah Theiner, Maribel Campos, Diane Heditsian, Susie Brain, Jack A Gilbert, Laura Esserman, Michael J Campbell	MSystems	2024-10-29	Abstract
Disparities in steatosis prevalence in the United States by Race or Ethnicity according to the 2023 criteria.	Luis Antonio Díaz, Jeffrey V Lazarus, Eduardo Fuentes-López, Francisco Idalsoaga, Gustavo Ayares, Hailemichael Desaleng, Pojsakorn Danpanichkul, Thomas G Cotter, Winston Dunn, Francisco Barrera, Karn Wijarnpreecha, Mazen Noureddin, Naim Alkhouri, Ashwani K Singal, Robert J Wong, Zobair M Younossi, Mary E Rinella, Patrick S Kamath, Ramon Bataller, Rohit Loomba, Marco Arrese, Juan Pablo Arab	Communications Medicine	2024-10-29	Abstract
Topical ivermectin treatment of rosacea changes the bacterial microbiome of the skin.	Teruaki Nakatsuji, Joyce Y Cheng, Anna Butcher, Faiza Shafiq, Olive Osuoji, Richard L Gallo, Tissa R Hata	The Journal Of Investigative Dermatology	2024-10-29	Abstract
Associations Between Gut Microbiota Diversity and a Host Fitness Proxy in a Naturalistic Experiment Using Threespine Stickleback Fish.	Andreas Härer, Ken A Thompson, Dolph Schluter, Diana J Rennison	Molecular Ecology	2024-10-28	Abstract
An integrated view of the structure and function of the human 4D nucleome.	, Job Dekker, Betul Akgol Oksuz, Yang Zhang, Ye Wang, Miriam K Minsk, Shuzhen Kuang, Liyan Yang, Johan H Gibcus, Nils Krietenstein, Oliver J Rando, Jie Xu, Derek H Janssens, Steven Henikoff, Alexander Kukalev, Andréa Willemin, Warren Winick-Ng, Rieke Kempfer, Ana Pombo, Miao Yu, Pradeep Kumar, Liguo Zhang, Andrew S Belmont, Takayo Sasaki, Tom van Schaik, Laura Brueckner, Daan Peric-Hupkes, Bas van Steensel, Ping Wang, Haoxi Chai, Minji Kim, Yijun Ruan, Ran Zhang, Sofia A Quinodoz, Prashant Bhat, Mitchell Guttman, Wenxin Zhao, Shu Chien, Yuan Liu, Sergey V Venev, Dariusz Plewczynski, Ibai Irastorza Azcarate, Dominik Szabó, Christoph J Thieme, Teresa Szczepińska, Mateusz Chiliński, Kaustav Sengupta, Mattia Conte, Andrea Esposito, Alex Abraham, Ruochi Zhang, Yuchuan Wang, Xingzhao Wen, Qiuyang Wu, Yang Yang, Jie Liu, Lorenzo Boninsegna, Asli Yildirim, Yuxiang Zhan, Andrea Maria Chiariello, Simona Bianco, Lindsay Lee, Ming Hu, Yun Li, R Jordan Barnett, Ashley L Cook, Daniel J Emerson, Claire Marchal, Peiyao Zhao, Peter Park, Burak H Alver, Andrew Schroeder, Rahi Navelkar, Clara Bakker, William Ronchetti, Shannon Ehmsen, Alexander Veit, Nils Gehlenborg, Ting Wang, Daofeng Li, Xiaotao Wang, Mario Nicodemi, Bing Ren, Sheng Zhong, Jennifer E Phillips-Cremins, David M Gilbert, Katherine S Pollard, Frank Alber, Jian Ma, William S Noble, Feng Yue	BioRxiv : The Preprint Server For Biology	2024-10-27	Abstract
Staphylococcus felis C4 exhibits in vitro antimicrobial activity against methicillin-resistant Staphylococcus pseudintermedius in a novel canine skin explant model.	Mayane Faccin, Alan M O'Neill, Sara D Lawhon, Kate A Worthing, Dominique J Wiener, Richard L Gallo, Aline Rodrigues Hoffmann	Veterinary Dermatology	2024-10-25	Abstract
Microbial solutions must be deployed against climate catastrophe.	Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert	The ISME Journal	2024-10-25	Abstract
Bioelectronic Drug-free Control of Opportunistic Pathogens through Selective Excitability.	Saehyun Kim, Ethan Eig, Jiping Yue, Albert Yang, Colin J Comerci, Megan Laune, Chuanwang Yang, Ananth Kamath, Jiuyun Shi, Pengju Li, Zhe Cheng, Changxu Sun, Tiantian Guo, Vanessa Tian, Gürol M Süel, Bozhi Tian	Device	2024-10-24	Abstract
iModulonMiner and PyModulon: Software for unsupervised mining of gene expression compendia.	Anand V Sastry, Yuan Yuan, Saugat Poudel, Kevin Rychel, Reo Yoo, Cameron R Lamoureux, Gaoyuan Li, Joshua T Burrows, Siddharth Chauhan, Zachary B Haiman, Tahani Al Bulushi, Yara Seif, Bernhard O Palsson, Daniel C Zielinski	PLoS Computational Biology	2024-10-23	Abstract
Cardiorespiratory Fitness and Sleep, but not Physical Activity, are Associated with Functional Connectivity in Older Adults.	David Wing, Bart Roelands, Julie Loebach Wetherell, Jeanne F Nichols, Romain Meeusen, Job G Godino, Joshua S Shimony, Abraham Z Snyder, Tomoyuki Nishino, Ginger E Nicol, Guy Nagels, Lisa T Eyler, Eric J Lenze	Sports Medicine - Open	2024-10-19	Abstract
Annotating full-scan MS data using tandem MS libraries.	Shipei Xing, Vincent Charron-Lamoureux, Yasin El Abiead, Pieter C Dorrestein	BioRxiv : The Preprint Server For Biology	2024-10-17	Abstract
Two-Dimensional Liquid Chromatography Tandem Mass Spectrometry Untangles the Deep Metabolome of Marine Dissolved Organic Matter.	Stilianos Papadopoulos Lambidis, Tilman Schramm, Karoline Steuer-Lodd, Shane Farrell, Paolo Stincone, Robin Schmid, Irina Koester, Ralph Torres, Thorsten Dittmar, Lihini Aluwihare, Carsten Simon, Daniel Petras	Environmental Science & Technology	2024-10-16	Abstract
Contrasting alpha, beta, and gamma diversity in the littoral zones of mountain lakes: effects of habitat size and within-lake community structuring on bacterial biogeography.	Andreas Härer, Joshua Dominguez, Jonathan B Shurin, Diana J Rennison	FEMS Microbiology Ecology	2024-10-14	Abstract
Association Between Dietary Patterns and Subgingival Microbiota: Results From the Oral Infections, Glucose Intolerance, and Insulin Resistance Study (ORIGINS).	Rebecca L Molinsky, Abigail J Johnson, Lisa Marotz, Sumith Roy, Bruno Bohn, Charlene E Goh, Ching-Yuan Chen, Bruce Paster, Rob Knight, Jeanine Genkinger, Panos N Papapanou, David R Jacobs, Ryan T Demmer	Journal Of Clinical Periodontology	2024-10-12	Abstract
Differential gut microbiota composition in β-Thalassemia patients and its correlation with iron overload.	Poochit Nonejuie, Alisa Wilantho, Daniel McDonald, Htut Htut Htoo, Jenjira Chalerm, Anupriya Tripathi, Chumpol Ngamphiw, Sissades Tongsima, Rob Knight, Kittiphong Paiboonsukwong, Suthat Fucharoen	Scientific Reports	2024-10-11	Abstract
Bioelectronic tools for understanding the universal language of electrical signaling across species and kingdoms.	Shivani Shukla, Colin J Comerci, Gürol M Süel, Zeinab Jahed	Biosensors & Bioelectronics	2024-10-11	Abstract
Advancing stem cell technologies for conservation of wildlife biodiversity.	Ashlee M Hutchinson, Ruth Appeltant, Tom Burdon, Qiuye Bao, Rhishikesh Bargaje, Andrea Bodnar, Stuart Chambers, Pierre Comizzoli, Laura Cook, Yoshinori Endo, Bob Harman, Katsuhiko Hayashi, Thomas Hildebrandt, Marisa L Korody, Uma Lakshmipathy, Jeanne F Loring, Clara Munger, Alex H M Ng, Ben Novak, Manabu Onuma, Sara Ord, Monique Paris, Andrew J Pask, Francisco Pelegri, Martin Pera, Ryan Phelan, Benyamin Rosental, Oliver A Ryder, Woranop Sukparangsi, Gareth Sullivan, Nicole Liling Tay, Nikki Traylor-Knowles, Shawn Walker, Antonia Weberling, Deanne J Whitworth, Suzannah A Williams, Jessye Wojtusik, Jun Wu, Qi-Long Ying, Thomas P Zwaka, Timo N Kohler	Development (Cambridge, England)	2024-10-09	Abstract
The intricate pathogenicity of group a : A comprehensive update.	Helena Bergsten, Victor Nizet	Virulence	2024-10-07	Abstract
A Three-year Longitudinal Assessment of Pseudomonas aeruginosa Antibiotic Susceptibility in Children With Cystic Fibrosis in the Era of Cystic Fibrosis Transmembrane Conductance Regulator Modulator Therapy.	Dayna Stout, John S Bradley, Yaron Fireizen, Kathryn Akong, Nanda Ramchandar	The Pediatric Infectious Disease Journal	2024-10-04	Abstract
Pan-genome-scale metabolic modeling of reveals functionally distinct groups.	Maxwell Neal, William Brakewood, Michael Betenbaugh, Karsten Zengler	MSystems	2024-10-04	Abstract
Diversity of human salivary heparan sulfate.	Charlotte B Spliid, Sanjay Mehta, Mark M Fuster, Cameron Martino, Claire L Morris, Nharae Lee, Ivan Florentino, Khang Tong, Lin Liu, Gail Ackermann, Rob Knight, Jeffrey D Esko, Tatiana Hurtado De Mendoza	Glycobiology	2024-10-03	Abstract
Environment-independent distribution of mutational effects emerges from microscopic epistasis.	Sarah M Ardell, Alena Martsul, Milo S Johnson, Sergey Kryazhimskiy	Science (New York, N.Y.)	2024-10-03	Abstract
Social behaviour mediates the microbiome response to antibiotic treatment in a wild mammal.	Bianca R P Brown, Allison E Williams, Kate A Sabey, Aaron Onserio, John Ewoi, Se Jin Song, Rob Knight, Vanessa O Ezenwa	Proceedings. Biological Sciences	2024-10-02	Abstract
Study of impacts of two types of cellular aging on the yeast bud morphogenesis.	Kevin Tsai, Zhen Zhou, Jiadong Yang, Zhiliang Xu, Shixin Xu, Roya Zandi, Nan Hao, Weitao Chen, Mark Alber	PLoS Computational Biology	2024-09-30	Abstract