Publications

These are the LAST 12 MONTHS of publications from the CMI membership team.

To see or search all of the publications, visit the archives page.

Article	Authors	Journal	Date	Abstract	Reach
Reverse metabolomics for the discovery of chemical structures from humans.	Emily C Gentry, Stephanie L Collins, Morgan Panitchpakdi, Pedro Belda-Ferre, Allison K Stewart, Marvic Carrillo Terrazas, Hsueh-Han Lu, Simone Zuffa, Tingting Yan, Julian Avila-Pacheco, Damian R Plichta, Allegra T Aron, Mingxun Wang, Alan K Jarmusch, Fuhua Hao, Mashette Syrkin-Nikolau, Hera Vlamakis, Ashwin N Ananthakrishnan, Brigid Boland, Amy Hemperly, Niels Vande Casteele, Frank J Gonzalez, Clary B Clish, Ramnik J Xavier, Hiutung Chu, Erin S Baker, Andrew D Patterson, Rob Knight, Dionicio Siegel, Pieter C Dorrestein	Nature	2023-12-05	Abstract
Commensal Oral Microbiota, Disease Severity and Mortality in Fibrotic Lung Disease.	David N O'Dwyer, John S Kim, Shwu-Fan Ma, Piyush Ranjan, Promi Das, Jay H Lipinski, Joseph D Metcalf, Nicole R Falkowski, Eric Yow, Kevin Anstrom, Robert P Dickson, Yong Huang, Jack A Gilbert, Fernando J Martinez, Imre Noth	American Journal Of Respiratory And Critical Care Medicine	2023-12-05	Abstract
Microbiology of the built environment: harnessing human-associated built environment research to inform the study and design of animal nests and enclosures.	Megan S Hill, Jack A Gilbert	Microbiology And Molecular Biology Reviews : MMBR	2023-12-04	Abstract
The effects of host ecology and phylogeny on gut microbiota (non)parallelism across birds and mammals.	Andreas Härer, Diana J Rennison	MSphere	2023-12-01	Abstract
Oral magnesium prevents acetaminophen-induced acute liver injury by modulating microbial metabolism.	Dongping Li, Yu Chen, Meijuan Wan, Fengyi Mei, Fangzhao Wang, Peng Gu, Xianglong Zhang, Rongjuan Wei, Yunong Zeng, Hanzhao Zheng, Bangguo Chen, Qingquan Xiong, Tao Xue, Tianshan Guan, Jiayin Guo, Yuanxin Tian, Li-Yan Zeng, Zhanguo Liu, Hang Yuan, Ling Yang, Hongbin Liu, Lei Dai, Yao Yu, Yifeng Qiu, Peng Wu, Sanda Win, Tin Aung Than, Riqing Wei, Bernd Schnabl, Neil Kaplowitz, Yong Jiang, Qiang Ma, Peng Chen	Cell Host & Microbe	2023-12-01	Abstract
Rising global burden of cancer attributable to high BMI from 2010 to 2019.	Darren Jun Hao Tan, Cheng Han Ng, Mark Muthiah, Jie Ning Yong, Douglas Chee, Margaret Teng, Zhen Yu Wong, Rebecca Wenling Zeng, Yip Han Chin, Jiong-Wei Wang, Pojsakorn Danpanichkul, Ruveena Bhavani Rajaram, Ramanuj DasGupta, Hiroyuki Suzuki, Hirokazu Takahashi, Nobuharu Tamaki, Yock Young Dan, Rashid Lui, Ajay Duseja, Mohammad Shadab Siddiqui, Khay Guan Yeoh, Arun Sanyal, Karn Wijarnpreecha, Rohit Loomba, Christos Socrates Mantzoros, Daniel Q Huang	Metabolism: Clinical And Experimental	2023-11-27	Abstract
Optimizing campus-wide COVID-19 test notifications with interpretable wastewater time-series features using machine learning models.	Tuo Lin, Smruthi Karthikeyan, Alysson Satterlund, Robert Schooley, Rob Knight, Victor De Gruttola, Natasha Martin, Jingjing Zou	Scientific Reports	2023-11-24	Abstract
Global pathogenomic analysis identifies known and candidate genetic antimicrobial resistance determinants in twelve species.	Jason C Hyun, Jonathan M Monk, Richard Szubin, Ying Hefner, Bernhard O Palsson	Nature Communications	2023-11-24	Abstract
High-resolution temporal profiling of E. coli transcriptional response.	Arianna Miano, Kevin Rychel, Andrew Lezia, Anand Sastry, Bernhard Palsson, Jeff Hasty	Nature Communications	2023-11-22	Abstract
Time to rethink academic publishing: the peer reviewer crisis.	Carolina Tropini, B Brett Finlay, Mark Nichter, Melissa K Melby, Jessica L Metcalf, Maria Gloria Dominguez-Bello, Liping Zhao, Margaret J McFall-Ngai, Naama Geva-Zatorsky, Katherine R Amato, Eduardo A Undurraga, Hendrik N Poinar, Jack A Gilbert	MBio	2023-11-17	Abstract
Role of Gut Microbiota in Statin-Associated New-Onset Diabetes-a Cross-Sectional and Prospective Analysis of the FINRISK 2002 Cohort.	Kari Koponen, Oleg Kambur, Bijoy Joseph, Matti O Ruuskanen, Pekka Jousilahti, Rodolfo Salido, Caitriona Brennan, Mohit Jain, Guillaume Meric, Michael Inouye, Leo Lahti, Teemu Niiranen, Aki S Havulinna, Rob Knight, Veikko Salomaa	Arteriosclerosis, Thrombosis, And Vascular Biology	2023-11-16	Abstract
Functional annotation of enzyme-encoding genes using deep learning with transformer layers.	Gi Bae Kim, Ji Yeon Kim, Jong An Lee, Charles J Norsigian, Bernhard O Palsson, Sang Yup Lee	Nature Communications	2023-11-14	Abstract
Topical delivery of seriniquinone for treatment of skin cancer and fungal infections is enabled by a liquid crystalline lamellar phase.	Rodrigo Dos A Miguel, Amanda S Hirata, Giovanna C Salata, Alexsandra C Apolinário, Vinicius M Barroso, Kelly Ishida, James J La Clair, William Fenical, Tereza S Martins, Leticia V Costa-Lotufo, Luciana B Lopes	European Journal Of Pharmaceutical Sciences : Official Journal Of The European Federation For Pharmaceutical Sciences	2023-11-10	Abstract
Transcriptomes and metabolism define mouse and human MAIT cell populations.	Shilpi Chandra, Gabriel Ascui, Thomas Riffelmacher, Ashu Chawla, Ciro Ramírez-Suástegui, Viankail C Castelan, Gregory Seumois, Hayley Simon, Mallory P Murray, Goo-Young Seo, Ashmitaa L R Premlal, Benjamin Schmiedel, Greet Verstichel, Yingcong Li, Chia-Hao Lin, Jason Greenbaum, John Lamberti, Raghav Murthy, John Nigro, Hilde Cheroutre, Christian H Ottensmeier, Stephen M Hedrick, Li-Fan Lu, Pandurangan Vijayanand, Mitchell Kronenberg	Science Immunology	2023-11-10	Abstract
Rapid bacteria-phage coevolution drives the emergence of multiscale networks.	Joshua M Borin, Justin J Lee, Adriana Lucia-Sanz, Krista R Gerbino, Joshua S Weitz, Justin R Meyer	Science (New York, N.Y.)	2023-11-09	Abstract
Universal Digital High Resolution Melt for the detection of pulmonary mold infections.	Tyler Goshia, April Aralar, Nathan Wiederhold, Jeffrey D Jenks, Sanjay R Mehta, Mridu Sinha, Aprajita Karmakar, Ankit Sharma, Rachit Shrivastava, Haoxiang Sun, P Lewis White, Martin Hoenigl, Stephanie I Fraley	BioRxiv : The Preprint Server For Biology	2023-11-09	Abstract
Remote effects of kidney drug transporter OAT1 on gut microbiome composition and urate homeostasis.	Vladimir S Ermakov, Jeffry C Granados, Sanjay K Nigam	JCI Insight	2023-11-08	Abstract
Development of a Quantitative PCR Method for Detecting Cytolysin in Human Stool Samples.	Noemí Cabré, Yongqiang Yang, Yanhan Wang, Bernd Schnabl	Methods And Protocols	2023-11-08	Abstract
Selective IL-27 production by intestinal regulatory T cells permits gut-specific regulation of T17 cell immunity.	Chia-Hao Lin, Cheng-Jang Wu, Sunglim Cho, Rasika Patkar, William J Huth, Ling-Li Lin, Mei-Chi Chen, Elisabeth Israelsson, Joanne Betts, Magdalena Niedzielska, Shefali A Patel, Han G Duong, Romana R Gerner, Chia-Yun Hsu, Matthew Catley, Rose A Maciewicz, Hiutung Chu, Manuela Raffatellu, John T Chang, Li-Fan Lu	Nature Immunology	2023-11-06	Abstract
Jumbo phages are active against extensively drug-resistant eyedrop-associated infections.	Ana Georgina Cobián Güemes, Pooja Ghatbale, Alisha N Blanc, Chase J Morgan, Andrew Garcia, Jesse Leonard, Lina Huang, Grace Kovalick, Marissa Proost, Megan Chiu, Peiting Kuo, Joseph Oh, Smruthi Karthikeyan, Rob Knight, Joe Pogliano, Robert T Schooley, David T Pride	Antimicrobial Agents And Chemotherapy	2023-11-06	Abstract
Genetic hypogonadal mouse model reveals niche-specific influence of reproductive axis and sex on intestinal microbial communities.	Laura Sisk-Hackworth, Jada Brown, Lillian Sau, Andrew A Levine, Lai Ying Ivy Tam, Aishwarya Ramesh, Reeya S Shah, Evelyn T Kelley-Thackray, Sophia Wang, Anita Nguyen, Scott T Kelley, Varykina G Thackray	Biology Of Sex Differences	2023-11-06	Abstract
Clinical Practice Guideline by the Pediatric Infectious Diseases Society (PIDS) and the Infectious Diseases Society of America (IDSA): 2023 Guideline on Diagnosis and Management of Acute Bacterial Arthritis in Pediatrics.	Charles R Woods, John S Bradley, Archana Chatterjee, Matthew P Kronman, Sandra R Arnold, Joan Robinson, Lawson A Copley, Antonio Arrieta, Sandra L Fowler, Christopher Harrison, Stephen C Eppes, C Buddy Creech, Laura P Stadler, Samir S Shah, Lynnette J Mazur, Maria A Carrillo-Marquez, Coburn H Allen, Valéry Lavergne	Journal Of The Pediatric Infectious Diseases Society	2023-11-06	Abstract
A combined adjuvant approach primes robust germinal center responses and humoral immunity in non-human primates.	Ivy Phung, Kristen A Rodrigues, Ester Marina-Zárate, Laura Maiorino, Bapi Pahar, Wen-Hsin Lee, Mariane Melo, Amitinder Kaur, Carolina Allers, Marissa Fahlberg, Brooke F Grasperge, Jason P Dufour, Faith Schiro, Pyone P Aye, Paul G Lopez, Jonathan L Torres, Gabriel Ozorowski, Saman Eskandarzadeh, Michael Kubitz, Erik Georgeson, Bettina Groschel, Rebecca Nedellec, Michael Bick, Katarzyna Kaczmarek Michaels, Hongmei Gao, Xiaoying Shen, Diane G Carnathan, Guido Silvestri, David C Montefiori, Andrew B Ward, Lars Hangartner, Ronald S Veazey, Dennis R Burton, William R Schief, Darrell J Irvine, Shane Crotty	Nature Communications	2023-11-04	Abstract
Returning incidentally discovered Hepatitis C RNA-seq results to COPDGene study participants.	Edwin K Silverman, Arthur Y Kim, Barry J Make, Elizabeth A Regan, Jarrett D Morrow, Craig P Hersh, James O'Brien, James D Crapo, Nadia N Hansel, Gerard Criner, Eric L Flenaugh, Douglas Conrad, Richard Casaburi, Russell P Bowler, Nicola A Hanania, R Graham Barr, Surya P Bhatt, Frank C Sciurba, Antonio Anzueto, MeiLan K Han, Charlene E McEvoy, Alejandro P Comellas, Dawn L DeMeo, Richard Rosiello, Jeffrey L Curtis, Tricia Uchida, Carla Wilson, P Pearl O'Rourke	NPJ Genomic Medicine	2023-10-31	Abstract
Cholesterol esterification and p53-mediated tumor suppression.	Youjun Li, Michael Karin, Edward V Prochownik	Exploration Of Targeted Anti-tumor Therapy	2023-10-31	Abstract
Genome-scale metabolic modeling of the human gut bacterium Bacteroides fragilis strain 638R.	Maxwell Neal, Deepan Thiruppathy, Karsten Zengler	PLoS Computational Biology	2023-10-30	Abstract
Deciphering the 'gut-brain axis' through microbiome diversity.	Jinyuan Liu, Ke Xu, Tsungchin Wu, Lydia Yao, Tanya T Nguyen, Dilip Jeste, Xinlian Zhang	General Psychiatry	2023-10-29	Abstract
HIV-1 Remission: Accelerating the Path to Permanent HIV-1 Silencing.	Danielle E Lyons, Priti Kumar, Nadia R Roan, Patricia A Defechereux, Cedric Feschotte, Ulrike C Lange, Niren Murthy, Pauline Sameshima, Eric Verdin, Julie A Ake, Matthew S Parsons, Avindra Nath, Sara Gianella, Davey M Smith, Esper G Kallas, Thomas J Villa, Richard Strange, Betty Mwesigwa, Robert L Furler O'Brien, Douglas F Nixon, Lishomwa C Ndhlovu, Susana T Valente, Melanie Ott	Viruses	2023-10-28	Abstract
Domestication shapes the pig gut microbiome and immune traits from the scale of lineage to population.	Sahana Kuthyar, Jessica Diaz, Fabiola Avalos-Villatoro, Christian Maltecca, Francesco Tiezzi, Robert R Dunn, Aspen T Reese	Journal Of Evolutionary Biology	2023-10-26	Abstract
Conceptual risk assessment of mosquito population modification gene-drive systems to control malaria transmission: preliminary hazards list workshops.	Ana Kormos, George Dimopoulos, Ethan Bier, Gregory C Lanzaro, John M Marshall, Anthony A James	Frontiers In Bioengineering And Biotechnology	2023-10-26	Abstract
Metabolic dysregulation and gut dysbiosis linked to hyperandrogenism in female mice.	Annie Chen, Alex Handzel, Lillian Sau, Laura Cui, Scott T Kelley, Varykina G Thackray	Endocrinology, Diabetes & Metabolism	2023-10-23	Abstract
Author Correction: Greengenes2 unifies microbial data in a single reference tree.	Daniel McDonald, Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio Gonzalez, James T Morton, Giorgia Nicolaou, Donovan H Parks, Søren M Karst, Mads Albertsen, Philip Hugenholtz, Todd DeSantis, Se Jin Song, Andrew Bartko, Aki S Havulinna, Pekka Jousilahti, Susan Cheng, Michael Inouye, Teemu Niiranen, Mohit Jain, Veikko Salomaa, Leo Lahti, Siavash Mirarab, Rob Knight	Nature Biotechnology	2023-10-18	Abstract
Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation.	Julia M Gauglitz, Kiana A West, Wout Bittremieux, Candace L Williams, Kelly C Weldon, Morgan Panitchpakdi, Francesca Di Ottavio, Christine M Aceves, Elizabeth Brown, Nicole C Sikora, Alan K Jarmusch, Cameron Martino, Anupriya Tripathi, Michael J Meehan, Kathleen Dorrestein, Justin P Shaffer, Roxana Coras, Fernando Vargas, Lindsay DeRight Goldasich, Tara Schwartz, MacKenzie Bryant, Gregory Humphrey, Abigail J Johnson, Katharina Spengler, Pedro Belda-Ferre, Edgar Diaz, Daniel McDonald, Qiyun Zhu, Emmanuel O Elijah, Mingxun Wang, Clarisse Marotz, Kate E Sprecher, Daniela Vargas-Robles, Dana Withrow, Gail Ackermann, Lourdes Herrera, Barry J Bradford, Lucas Maciel Mauriz Marques, Juliano Geraldo Amaral, Rodrigo Moreira Silva, Flavio Protasio Veras, Thiago Mattar Cunha, Rene Donizeti Ribeiro Oliveira, Paulo Louzada-Junior, Robert H Mills, Paulina K Piotrowski, Stephanie L Servetas, Sandra M Da Silva, Christina M Jones, Nancy J Lin, Katrice A Lippa, Scott A Jackson, Rima Kaddurah Daouk, Douglas Galasko, Parambir S Dulai, Tatyana I Kalashnikova, Curt Wittenberg, Robert Terkeltaub, Megan M Doty, Jae H Kim, Kyung E Rhee, Julia Beauchamp-Walters, Kenneth P Wright, Maria Gloria Dominguez-Bello, Mark Manary, Michelli F Oliveira, Brigid S Boland, Norberto Peporine Lopes, Monica Guma, Austin D Swafford, Rachel J Dutton, Rob Knight, Pieter C Dorrestein	Nature Biotechnology	2023-10-18	Abstract
Author Correction: Generation of accurate, expandable phylogenomic trees with uDance.	Metin Balaban, Yueyu Jiang, Qiyun Zhu, Daniel McDonald, Rob Knight, Siavash Mirarab	Nature Biotechnology	2023-10-18	Abstract
People with HIV at the end of life and their next-of-kin/loved ones are willing to participate in interventional HIV cure-related research.	Samuel O Ndukwe, Hursch Patel, Brittany Shelton, Susanna Concha-Garcia, Cheryl Dullano, Stephanie Solso, Steven Hendrickx, Patricia K Riggs, Thomas J Villa, Andy Kaytes, Jeff Taylor, Susan J Little, David Lessard, Anish K Arora, Cecilia T Costiniuk, Shadi Eskaf, Davey M Smith, Sara Gianella, Karine Dubé	AIDS (London, England)	2023-10-18	Abstract
Valence-driven colorimetric detection of norovirus protease peptide-AuNP interactions.	Chuxuan Ling, Zhicheng Jin, Justin Yeung, Elany Barbosa da Silva, Yu-Ci Chang, Tengyu He, Wonjun Yim, Anthony J O'Donoghue, Jesse V Jokerst	Chemical Communications (Cambridge, England)	2023-10-17	Abstract
Microbiologist in the clinic: coitally related symptoms with negative urine cultures.	Linda Brubaker, Harry Horsley, Rajvinder Khasriya, Alan J Wolfe	International Urogynecology Journal	2023-10-14	Abstract
Humanized Anti-Carcinoembryonic Antigen Antibodies Brightly Target and Label Gastric Cancer in Orthotopic Mouse Models.	Kristin E Cox, Michael A Turner, Siamak Amirfakhri, Thinzar M Lwin, Mojgan Hosseini, Pradipta Ghosh, Marygorret Obonyo, Takashi Murakami, Robert M Hoffman, Paul J Yazaki, Michael Bouvet	The Journal Of Surgical Research	2023-10-13	Abstract
An update on current and novel molecular diagnostics for the diagnosis of invasive fungal infections.	Jeffrey D Jenks, P Lewis White, Sarah E Kidd, Tyler Goshia, Stephanie I Fraley, Martin Hoenigl, George R Thompson	Expert Review Of Molecular Diagnostics	2023-10-06	Abstract
Using Multidimensional Separations to Distinguish Isomeric Amino Acid-Bile Acid Conjugates and Assess Their Presence and Perturbations in Model Systems.	Allison K Stewart, Matthew H Foley, Michael K Dougherty, Sarah K McGill, Ajay S Gulati, Emily C Gentry, Lee R Hagey, Pieter C Dorrestein, Casey M Theriot, James N Dodds, Erin S Baker	Analytical Chemistry	2023-10-05	Abstract
The Challenge of Extensively Drug-resistant Gram-negative Pathogens in Children: Newer Antibiotics and When to Use Them for Empiric and Definitive Therapy.	Elias Iosifidis, John S Bradley	The Pediatric Infectious Disease Journal	2023-10-05	Abstract
Glycoproteomic landscape and structural dynamics of TIM family immune checkpoints enabled by mucinase SmE.	Joann Chongsaritsinsuk, Alexandra D Steigmeyer, Keira E Mahoney, Mia A Rosenfeld, Taryn M Lucas, Courtney M Smith, Alice Li, Deniz Ince, Fiona L Kearns, Alexandria S Battison, Marie A Hollenhorst, D Judy Shon, Katherine H Tiemeyer, Victor Attah, Catherine Kwon, Carolyn R Bertozzi, Michael J Ferracane, Mark A Lemmon, Rommie E Amaro, Stacy A Malaker	Nature Communications	2023-10-04	Abstract
Human Milk Bioactive Components and Child Growth and Body Composition in the First 2 Years: A Systematic Review.	Meredith Merilee Brockway, Allison I Daniel, Sarah M Reyes, Julia M Gauglitz, Matthew Granger, Joann M McDermid, Deborah Chan, Rebecca Refvik, Karanbir K Sidhu, Suad Musse, Pooja P Patel, Caroline Monnin, Larisa Lotoski, Donna T Geddes, Fyezah Jehan, Patrick Kolsteren, Lars Bode, Kamilla G Eriksen, Lindsay H Allen, Daniela Hampel, Natalie Rodriguez, Meghan B Azad	Advances In Nutrition (Bethesda, Md.)	2023-10-04	Abstract
GWAS Meta-Analysis of Suicide Attempt: Identification of 12 Genome-Wide Significant Loci and Implication of Genetic Risks for Specific Health Factors.	Anna R Docherty, Niamh Mullins, Allison E Ashley-Koch, Xuejun Qin, Jonathan R I Coleman, Andrey Shabalin, JooEun Kang, Balasz Murnyak, Frank Wendt, Mark Adams, Adrian I Campos, Emily DiBlasi, Janice M Fullerton, Henry R Kranzler, Amanda V Bakian, Eric T Monson, Miguel E Rentería, Consuelo Walss-Bass, Ole A Andreassen, Chittaranjan Behera, Cynthia M Bulik, Howard J Edenberg, Ronald C Kessler, J John Mann, John I Nurnberger, Giorgio Pistis, Fabian Streit, Robert J Ursano, Renato Polimanti, Michelle Dennis, Melanie Garrett, Lauren Hair, Philip Harvey, Elizabeth R Hauser, Michael A Hauser, Jennifer Huffman, Daniel Jacobson, Ravi Madduri, Benjamin McMahon, David W Oslin, Jodie Trafton, Swapnil Awasthi, Wade H Berrettini, Martin Bohus, Xiao Chang, Hsi-Chung Chen, Wei J Chen, Erik D Christensen, Scott Crow, Philibert Duriez, Alexis C Edwards, Fernando Fernández-Aranda, Hanga Galfalvy, Michael Gandal, Philip Gorwood, Yiran Guo, Jonathan D Hafferty, Hakon Hakonarson, Katherine A Halmi, Akitoyo Hishimoto, Sonia Jain, Stéphane Jamain, Susana Jiménez-Murcia, Craig Johnson, Allan S Kaplan, Walter H Kaye, Pamela K Keel, James L Kennedy, Minsoo Kim, Kelly L Klump, Daniel F Levey, Dong Li, Shih-Cheng Liao, Klaus Lieb, Lisa Lilenfeld, Christian R Marshall, James E Mitchell, Satoshi Okazaki, Ikuo Otsuka, Dalila Pinto, Abigail Powers, Nicolas Ramoz, Stephan Ripke, Stefan Roepke, Vsevolod Rozanov, Stephen W Scherer, Christian Schmahl, Marcus Sokolowski, Anna Starnawska, Michael Strober, Mei-Hsin Su, Laura M Thornton, Janet Treasure, Erin B Ware, Hunna J Watson, Stephanie H Witt, D Blake Woodside, Zeynep Yilmaz, Lea Zillich, Rolf Adolfsson, Ingrid Agartz, Martin Alda, Lars Alfredsson, Vivek Appadurai, María Soler Artigas, Sandra Van der Auwera, M Helena Azevedo, Nicholas Bass, Claiton H D Bau, Bernhard T Baune, Frank Bellivier, Klaus Berger, Joanna M Biernacka, Tim B Bigdeli, Elisabeth B Binder, Michael Boehnke, Marco P Boks, David L Braff, Richard Bryant, Monika Budde, Enda M Byrne, Wiepke Cahn, Enrique Castelao, Jorge A Cervilla, Boris Chaumette, Aiden Corvin, Nicholas Craddock, Srdjan Djurovic, Jerome C Foo, Andreas J Forstner, Mark Frye, Justine M Gatt, Ina Giegling, Hans J Grabe, Melissa J Green, Eugenio H Grevet, Maria Grigoroiu-Serbanescu, Blanca Gutierrez, Jose Guzman-Parra, Marian L Hamshere, Annette M Hartmann, Joanna Hauser, Stefanie Heilmann-Heimbach, Per Hoffmann, Marcus Ising, Ian Jones, Lisa A Jones, Lina Jonsson, René S Kahn, John R Kelsoe, Kenneth S Kendler, Stefan Kloiber, Karestan C Koenen, Manolis Kogevinas, Marie-Odile Krebs, Mikael Landén, Marion Leboyer, Phil H Lee, Douglas F Levinson, Calwing Liao, Jolanta Lissowska, Fermin Mayoral, Susan L McElroy, Patrick McGrath, Peter McGuffin, Andrew McQuillin, Divya Mehta, Ingrid Melle, Philip B Mitchell, Esther Molina, Gunnar Morken, Caroline Nievergelt, Markus M Nöthen, Michael C O'Donovan, Roel A Ophoff, Michael J Owen, Carlos Pato, Michele T Pato, Brenda W J H Penninx, James B Potash, Robert A Power, Martin Preisig, Digby Quested, Josep Antoni Ramos-Quiroga, Andreas Reif, Marta Ribasés, Vanesa Richarte, Marcella Rietschel, Margarita Rivera, Andrea Roberts, Gloria Roberts, Guy A Rouleau, Diego L Rovaris, Alan R Sanders, Peter R Schofield, Thomas G Schulze, Laura J Scott, Alessandro Serretti, Jianxin Shi, Lea Sirignano, Pamela Sklar, Olav B Smeland, Jordan W Smoller, Edmund J S Sonuga-Barke, Maciej Trzaskowski, Ming T Tsuang, Gustavo Turecki, Laura Vilar-Ribó, John B Vincent, Henry Völzke, James T R Walters, Cynthia Shannon Weickert, Thomas W Weickert, Myrna M Weissman, Leanne M Williams, Naomi R Wray, Clement C Zai, Esben Agerbo, Anders D Børglum, Gerome Breen, Ditte Demontis, Annette Erlangsen, Joel Gelernter, Stephen J Glatt, David M Hougaard, Hai-Gwo Hwu, Po-Hsiu Kuo, Cathryn M Lewis, Qingqin S Li, Chih-Min Liu, Nicholas G Martin, Andrew M McIntosh, Sarah E Medland, Ole Mors, Merete Nordentoft, Catherine M Olsen, David Porteous, Daniel J Smith, Eli A Stahl, Murray B Stein, Danuta Wasserman, Thomas Werge, David C Whiteman, Virginia Willour, , , , , , , , , Hilary Coon, Jean C Beckham, Nathan A Kimbrel, Douglas M Ruderfer	The American Journal Of Psychiatry	2023-10-01	Abstract
A broad-based probe-free qPCR assay for detection and discrimination of three human herpes viruses.	Anshu Gupta, Shelley M Lawrence, Stephanie I Fraley	Journal Of Virological Methods	2023-09-29	Abstract
Oral fungal profiling and risk of nasopharyngeal carcinoma: a population-based case-control study.	Yufeng Chen, Wanxin Li, Ellen T Chang, Justine W Debelius, Lokeshwaran Manoharan, Yuming Zheng, Yancheng Li, Guangwu Huang, Hans-Olov Adami, Rob Knight, Yonglin Cai, Zhe Zhang, Weimin Ye	EBioMedicine	2023-09-28	Abstract
Directed evolution unlocks oxygen reactivity for a nicotine-degrading flavoenzyme.	Mark Dulchavsky, Rishav Mitra, Kevin Wu, Joshua Li, Karli Boer, Xiaomeng Liu, Zhiyao Zhang, Cristian Vasquez, Christopher T Clark, Kaitrin Funckes, Kokila Shankar, Selene Bonnet-Zahedi, Mohammad Siddiq, Yadira Sepulveda, Raymond T Suhandynata, Jeremiah D Momper, Antonio N Calabrese, Olivier George, Frederick Stull, James C A Bardwell	Nature Chemical Biology	2023-09-28	Abstract
A Malassezia pseudoprotease dominates the secreted hydrolase landscape and is a potential allergen on skin.	Wisely Chua, Carl O Marsh, Si En Poh, Winston Lc Koh, Melody Li Ying Lee, Li Fang Koh, Xin-Zi Emily Tang, Peter See, Zheng Ser, Shi Mei Wang, Radoslaw M Sobota, Thomas L Dawson, Yik Weng Yew, Steven Thng, Anthony J O' Donoghue, Hazel H Oon, John E Common, Hao Li	Biochimie	2023-09-23	Abstract
Phage therapy: Targeting intestinal bacterial microbiota for the treatment of liver diseases.	Jumpei Fujiki, Bernd Schnabl	JHEP Reports : Innovation In Hepatology	2023-09-23	Abstract
Validating Tools to Detect and Inactivate Monkeypox Virus in Human Milk.	Alex E Clark, Annalee Furst, Kristija Sejane, Lisa Stellwagen, Marissa Proost, David Pride, Davey M Smith, Aaron F Carlin, Lars Bode	Breastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine	2023-09-21	Abstract
Assessing the validity of fecal sampling for characterizing variation in threespine stickleback's gut microbiota.	Andreas Härer, Diana J Rennison	PloS One	2023-09-21	Abstract
Discrimination of cell-intrinsic and environment-dependent effects of natural genetic variation on Kupffer cell epigenomes and transcriptomes.	Hunter Bennett, Ty D Troutman, Enchen Zhou, Nathanael J Spann, Verena M Link, Jason S Seidman, Christian K Nickl, Yohei Abe, Mashito Sakai, Martina P Pasillas, Justin M Marlman, Carlos Guzman, Mojgan Hosseini, Bernd Schnabl, Christopher K Glass	Nature Immunology	2023-09-21	Abstract
Linking bacterial tetrabromopyrrole biosynthesis to coral metamorphosis.	Amanda T Alker, Morgan V Farrell, Alyssa M Demko, Trevor N Purdy, Sanjoy Adak, Bradley S Moore, Jennifer M Sneed, Valerie J Paul, Nicholas J Shikuma	ISME Communications	2023-09-19	Abstract
Gardnerella vaginolysin potentiates glycan molecular mimicry by Neisseria gonorrhoeae.	Sydney R Morrill, Sudeshna Saha, Ajit P Varki, Warren G Lewis, Sanjay Ram, Amanda L Lewis	The Journal Of Infectious Diseases	2023-09-18	Abstract
Gut microbiota parallelism and divergence associated with colonisation of novel habitats.	Andreas Härer, Alexander A Mauro, Telma G Laurentino, Erica B Rosenblum, Diana J Rennison	Molecular Ecology	2023-09-16	Abstract
Universal Viral Screening of Newly Diagnosed Cancer Patients in the United States: A Cost Efficiency Evaluation.	Riha Vaidya, Joseph M Unger, Rohit Loomba, Jessica P Hwang, Rashmi Chugh, Monica A Tincopa, Kathryn B Arnold, Dawn L Hershman, Scott D Ramsey	Cancer Research Communications	2023-09-14	Abstract
Sample preconcentration through airjet-induced liquid phase enrichment.	Edward Wang, Louise C Laurent, Drew A Hall, Yu-Hwa Lo	Lab On A Chip	2023-09-13	Abstract
Laboratory evolution, transcriptomics, and modeling reveal mechanisms of paraquat tolerance.	Kevin Rychel, Justin Tan, Arjun Patel, Cameron Lamoureux, Ying Hefner, Richard Szubin, Josefin Johnsen, Elsayed Tharwat Tolba Mohamed, Patrick V Phaneuf, Amitesh Anand, Connor A Olson, Joon Ho Park, Anand V Sastry, Laurence Yang, Adam M Feist, Bernhard O Palsson	Cell Reports	2023-09-13	Abstract
Subgroup analysis of phase 2 study of ceftolozane/tazobactam in neonates and young infants with pyelonephritis.	Emmanuel Roilides, John S Bradley, Julia Lonchar, Jennifer A Huntington, Prachi Wickremasingha, Feng-Hsiu Su, Christopher J Bruno, Matthew G Johnson	Microbiology Spectrum	2023-09-12	Abstract
The silent burden of non-alcoholic fatty liver disease in the elderly: A global burden of disease analysis.	Pojsakorn Danpanichkul, Cheng Han Ng, Mark D Muthiah, Kwanjit Duangsonk, Jie Ning Yong, Darren Jun Hao Tan, Wen Hui Lim, Zhen Yu Wong, Nicholas Syn, Tsubasa Tsusumi, Hirokazu Takahashi, Mohammad Shadab Siddiqui, Vincent Wai-Sun Wong, Christos S Mantzoros, Daniel Q Huang, Mazen Noureddin, Rohit Loomba, Arun J Sanyal, Karn Wijarnpreecha	Alimentary Pharmacology & Therapeutics	2023-09-11	Abstract
An approach to zwitterionic peptide design for colorimetric detection of the Southampton norovirus SV3CP protease.	Justin Yeung, Zhicheng Jin, Chuxuan Ling, Maurice Retout, Elany Barbosa da Silva, Manan Damani, Yu-Ci Chang, Wonjun Yim, Anthony J O'Donoghue, Jesse V Jokerst	The Analyst	2023-09-11	Abstract
Design of synthetic bacterial biosensors.	Alyssa J Chiang, Jeff Hasty	Current Opinion In Microbiology	2023-09-11	Abstract
Metabolic engineering of Synechococcus elongatus 7942 for enhanced sucrose biosynthesis.	Bo Wang, Cristal Zuniga, Michael T Guarnieri, Karsten Zengler, Michael Betenbaugh, Jamey D Young	Metabolic Engineering	2023-09-05	Abstract
Reply to Augello, P.A.; Wu, J. Comment on "Rogers et al. The Combined Effects of Cannabis, Methamphetamine, and HIV on Neurocognition. 2023, , 674".	Jeffrey M Rogers, Jennifer E Iudicello, Maria Cecilia G Marcondes, Erin E Morgan, Mariana Cherner, Ronald J Ellis, Scott L Letendre, Robert K Heaton, Igor Grant	Viruses	2023-09-05	Abstract
A multi-scale expression and regulation knowledge base for Escherichia coli.	Cameron R Lamoureux, Katherine T Decker, Anand V Sastry, Kevin Rychel, Ye Gao, John Luke McConn, Daniel C Zielinski, Bernhard O Palsson	Nucleic Acids Research	2023-09-05	Abstract
Similarities in the induction of the intracellular pathogen response in Caenorhabditis elegans and the type I interferon response in mammals.	Vladimir Lažetić, Lakshmi E Batachari, Alistair B Russell, Emily R Troemel	BioEssays : News And Reviews In Molecular, Cellular And Developmental Biology	2023-09-04	Abstract
Microbiomes and metabolomes of dominant coral reef primary producers illustrate a potential role for immunolipids in marine symbioses.	Helena Mannochio-Russo, Sean O I Swift, Kirsten K Nakayama, Christopher B Wall, Emily C Gentry, Morgan Panitchpakdi, Andrés M Caraballo-Rodriguez, Allegra T Aron, Daniel Petras, Kathleen Dorrestein, Tatiana K Dorrestein, Taylor M Williams, Eileen M Nalley, Noam T Altman-Kurosaki, Mike Martinelli, Jeff Y Kuwabara, John L Darcy, Vanderlan S Bolzani, Linda Wegley Kelly, Camilo Mora, Joanne Y Yew, Anthony S Amend, Margaret McFall-Ngai, Nicole A Hynson, Pieter C Dorrestein, Craig E Nelson	Communications Biology	2023-08-31	Abstract
Portosystemic shunt placement reveals blood signatures for the development of hepatic encephalopathy through mass spectrometry.	Ana Carolina Dantas Machado, Stephany Flores Ramos, Julia M Gauglitz, Anne-Marie Fassler, Daniel Petras, Alexander A Aksenov, Un Bi Kim, Michael Lazarowicz, Abbey Barnard Giustini, Hamed Aryafar, Irine Vodkin, Curtis Warren, Pieter C Dorrestein, Ali Zarrinpar, Amir Zarrinpar	Nature Communications	2023-08-31	Abstract
Metabolic programs of T cell tissue residency empower tumour immunity.	Miguel Reina-Campos, Maximilian Heeg, Kelly Kennewick, Ian T Mathews, Giovanni Galletti, Vida Luna, Quynhanh Nguyen, Hongling Huang, J Justin Milner, Kenneth H Hu, Amy Vichaidit, Natalie Santillano, Brigid S Boland, John T Chang, Mohit Jain, Sonia Sharma, Matthew F Krummel, Hongbo Chi, Steven J Bensinger, Ananda W Goldrath	Nature	2023-08-30	Abstract
Urine Excretion, Organ Distribution, and Placental Transfer of 6PPD and 6PPD-Quinone in Mice and Potential Developmental Toxicity through Nuclear Receptor Pathways.	Haoqi Nina Zhao, Sydney P Thomas, Mark J Zylka, Pieter C Dorrestein, Wenxin Hu	Environmental Science & Technology	2023-08-29	Abstract
Targeted and Logical Discovery of Piperazic Acid-Bearing Natural Products Based on Genomic and Spectroscopic Signatures.	Daniel Shin, Woong Sub Byun, Sangwook Kang, Ilnam Kang, Eun Seo Bae, Joon Soo An, Ji Hyeon Im, Jiyoon Park, Eunji Kim, Keebeom Ko, Sunghoon Hwang, Honghui Lee, Yun Kwon, Yoon-Joo Ko, Suckchang Hong, Sang-Jip Nam, Seung Bum Kim, William Fenical, Yeo Joon Yoon, Jang-Cheon Cho, Sang Kook Lee, Dong-Chan Oh	Journal Of The American Chemical Society	2023-08-29	Abstract
Sex hormones, the stool microbiome, and subclinical atherosclerosis in women with and without HIV.	Brandilyn A Peters, David B Hanna, Yi Wang, Kathleen M Weber, Elizabeth Topper, Allison A Appleton, Anjali Sharma, Howard N Hodis, Nanette Santoro, Chantal Guillemette, Patrick Caron, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi	The Journal Of Clinical Endocrinology And Metabolism	2023-08-29	Abstract
Machine learning uncovers the transcriptome in microbial communities and during infection.	Heera Bajpe, Kevin Rychel, Cameron R Lamoureux, Anand V Sastry, Bernhard O Palsson	MSystems	2023-08-28	Abstract
Rescues Allergic Contact Dermatitis in Sphingosine 1-Phosphate Receptor 2-Deficient Skin.	Kana Masuda-Kuroki, Shahrzad Alimohammadi, Anna Di Nardo	International Journal Of Molecular Sciences	2023-08-25	Abstract
Epidemiology of pediatric astrovirus gastroenteritis in a Nicaraguan birth cohort.	Rebecca J Rubinstein, Yaoska Reyes, Fredman González, Lester Gutiérrez, Christian Toval-Ruíz, Kelli Hammond, Lars Bode, Jan Vinjé, Samuel Vilchez, Sylvia Becker-Dreps, Filemón Bucardo, Nadja A Vielot	MedRxiv : The Preprint Server For Health Sciences	2023-08-25	Abstract
Gut microbiota and fecal short chain fatty acids differ with adiposity and country of origin: the METS-microbiome study.	Gertrude Ecklu-Mensah, Candice Choo-Kang, Maria Gjerstad Maseng, Sonya Donato, Pascal Bovet, Bharathi Viswanathan, Kweku Bedu-Addo, Jacob Plange-Rhule, Prince Oti Boateng, Terrence E Forrester, Marie Williams, Estelle V Lambert, Dale Rae, Nandipha Sinyanya, Amy Luke, Brian T Layden, Stephen O'Keefe, Jack A Gilbert, Lara R Dugas	Nature Communications	2023-08-24	Abstract
Ramipril for the Treatment of COVID-19: RAMIC, a Randomized, Double-Blind, Placebo-Controlled Clinical Trial.	Daniel Q Huang, Veeral Ajmera, Christian Tomaszewski, Andrew LaFree, Ricki Bettencourt, Wesley K Thompson, Davey M Smith, Atul Malhotra, Ravindra L Mehta, Vaishal Tolia, Jeffrey Yin, Paul A Insel, Stone Leachman, Jinho Jung, Summer Collier, Lisa Richards, Kristin Woods, Maral Amangurbanova, Archana Bhatt, Xinlian Zhang, Oana M Penciu, Stuart Zarich, Tamrat Retta, Michelle S Harkins, J Pedro Teixeira, Brian Chinnock, Netanya S Utay, Jordan E Lake, Rohit Loomba	Advances In Therapy	2023-08-24	Abstract
Staphylococcus epidermidis activates keratinocyte cytokine expression and promotes skin inflammation through the production of phenol-soluble modulins.	Michael R Williams, Michelle D Bagood, Timothy J Enroth, Zoie L Bunch, Nina Jiang, Edward Liu, Samia Almoughrabie, Shadi Khalil, Fengwu Li, Samantha Brinton, Nadja B Cech, Alexander R Horswill, Richard L Gallo	Cell Reports	2023-08-22	Abstract
A Protease-Responsive Polymer/Peptide Conjugate and Reversible Assembly of Silver Clusters for the Detection of Enzymatic Activity.	Maurice Retout, Lubna Amer, Wonjun Yim, Matthew N Creyer, Benjamin Lam, Diego F Trujillo, Jan Potempa, Anthony J O'Donoghue, Casey Chen, Jesse V Jokerst	ACS Nano	2023-08-21	Abstract
Commensal induce epidermal lipid synthesis important for skin barrier function.	Samia Almoughrabie, Laura Cau, Kellen Cavagnero, Alan M O'Neill, Fengwu Li, Andrea Roso-Mares, Carine Mainzer, Brigitte Closs, Matthew J Kolar, Kevin J Williams, Steven J Bensinger, Richard L Gallo	Science Advances	2023-08-18	Abstract
Paired microbiome and metabolome analyses associate bile acid changes with colorectal cancer progression.	Ting Fu, Tao Huan, Gibraan Rahman, Hui Zhi, Zhenjiang Xu, Tae Gyu Oh, Jian Guo, Sally Coulter, Anupriya Tripathi, Cameron Martino, Justin L McCarville, Qiyun Zhu, Fritz Cayabyab, Brian Low, Mingxiao He, Shipei Xing, Fernando Vargas, Ruth T Yu, Annette Atkins, Christopher Liddle, Janelle Ayres, Manuela Raffatellu, Pieter C Dorrestein, Michael Downes, Rob Knight, Ronald M Evans	Cell Reports	2023-08-18	Abstract
Diagnosis of childhood febrile illness using a multi-class blood RNA molecular signature.	Dominic Habgood-Coote, Clare Wilson, Chisato Shimizu, Anouk M Barendregt, Ria Philipsen, Rachel Galassini, Irene Rivero Calle, Lesley Workman, Philipp K A Agyeman, Gerben Ferwerda, Suzanne T Anderson, J Merlijn van den Berg, Marieke Emonts, Enitan D Carrol, Colin G Fink, Ronald de Groot, Martin L Hibberd, John Kanegaye, Mark P Nicol, Stéphane Paulus, Andrew J Pollard, Antonio Salas, Fatou Secka, Luregn J Schlapbach, Adriana H Tremoulet, Michael Walther, Werner Zenz, , , , , , Michiel Van der Flier, Heather J Zar, Taco Kuijpers, Jane C Burns, Federico Martinón-Torres, Victoria J Wright, Lachlan J M Coin, Aubrey J Cunnington, Jethro A Herberg, Michael Levin, Myrsini Kaforou	Med (New York, N.Y.)	2023-08-11	Abstract
Engineered bacteria detect tumor DNA.	Robert M Cooper, Josephine A Wright, Jia Q Ng, Jarrad M Goyne, Nobumi Suzuki, Young K Lee, Mari Ichinose, Georgette Radford, Feargal J Ryan, Shalni Kumar, Elaine M Thomas, Laura Vrbanac, Rob Knight, Susan L Woods, Daniel L Worthley, Jeff Hasty	Science (New York, N.Y.)	2023-08-10	Abstract
A metabolite from commensal Candida albicans enhances the bactericidal activity of macrophages and protects against sepsis.	Peng Gu, Ruofan Liu, Qin Yang, Li Xie, Rongjuan Wei, Jiaxin Li, Fengyi Mei, Tao Chen, Zhenhua Zeng, Yan He, Hongwei Zhou, Hongjuan Peng, Kutty Selva Nandakumar, Huikuan Chu, Yong Jiang, Wei Gong, Ye Chen, Bernd Schnabl, Peng Chen	Cellular & Molecular Immunology	2023-08-09	Abstract
The genome-scale metabolic model for the purple non-sulfur bacterium Rhodopseudomonas palustris Bis A53 accurately predicts phenotypes under chemoheterotrophic, chemoautotrophic, photoheterotrophic, and photoautotrophic growth conditions.	Diego Tec-Campos, Camila Posadas, Juan D Tibocha-Bonilla, Deepan Thiruppathy, Nathan Glonek, Cristal Zuñiga, Alejandro Zepeda, Karsten Zengler	PLoS Computational Biology	2023-08-09	Abstract
Reconstruction of the last bacterial common ancestor from 183 pangenomes reveals a versatile ancient core genome.	Jason C Hyun, Bernhard O Palsson	Genome Biology	2023-08-08	Abstract
Phenotypically complex living materials containing engineered cyanobacteria.	Debika Datta, Elliot L Weiss, Daniel Wangpraseurt, Erica Hild, Shaochen Chen, James W Golden, Susan S Golden, Jonathan K Pokorski	Nature Communications	2023-08-07	Abstract
Meditation-induced bloodborne factors as an adjuvant treatment to COVID-19 disease.	Juan P Zuniga-Hertz, Ramamurthy Chitteti, Joe Dispenza, Raphael Cuomo, Jacqueline A Bonds, Elena L Kopp, Sierra Simpson, Jonathan Okerblom, Svetlana Maurya, Brinda K Rana, Atsushi Miyonahara, Ingrid R Niesman, Jacqueline Maree, Gianna Belza, Hillari D Hamilton, Carla Stanton, David J Gonzalez, Michelle A Poirier, Tobias Moeller-Bertram, Hemal H Patel	Brain, Behavior, & Immunity - Health	2023-08-07	Abstract
The cervical microbiota of Hispanics living in Puerto Rico is nonoptimal regardless of HPV status.	Daniela Vargas-Robles, Josefina Romaguera, Ian Alvarado-Velez, Eduardo Tosado-Rodríguez, Anelisse Dominicci-Maura, Maria Sanchez, Kara J Wiggin, Magaly Martinez-Ferrer, Jack A Gilbert, Larry J Forney, Filipa Godoy-Vitorino	MSystems	2023-08-03	Abstract
A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data.	Pieter Dorrestein, Simone Zuffa, Robin Schmid, Anelize Bauermeister, Paulo Wender Portal Gomes, Andres Caraballo-Rodriguez, Yasin El Abiead, Allegra Aron, Emily Gentry, Jasmine Zemlin, Michael Meehan, Nicole Avalon, Robert Cichewicz, Ekaterina Buzun, Marvic Carrillo-Terrazas, Chia-Yun Hsu, Renee Oles, Adriana Vasquez Ayala, Jiaqi Zhao, Hiutung Chu, Mirte Kuijpers, Sara Jackrel, Fidele Tugizimana, Lerato Nephali, Ian Dubery, Ntakadzeni Madala, Eduarda Moreira, Leticia Costa-Lotufo, Norberto Lopes, Paula Rezende-Teixeira, Paula Jimenez, Bipin Rimal, Andrew Patterson, Matthew Traxler, Rita de Cassia Pessotti, Daniel Alvarado-Villalobos, Giselle Tamayo-Castillo, Priscila Chaverri, Efrain Escudero-Leyva, Luis-Manuel Quiros-Guerrero, Alexandre Bory, Juliette Joubert, Adriano Rutz, Jean-Luc Wolfender, Pierre-Marie Allard, Andreas Sichert, Sammy Pontrelli, Benjamin Pullman, Nuno Bandeira, William Gerwick, Katia Gindro, Josep Massana-Codina, Berenike Wagner, Karl Forchhammer, Daniel Petras, Nicole Aiosa, Neha Garg, Manuel Liebeke, Patric Bourceau, Kyo Bin Kang, Henna Gadhavi, Luiz Pedro de Carvalho, Mariana Silva Dos Santos, Alicia Pérez-Lorente, Carlos Molina-Santiago, Diego Romero, Raimo Franke, Mark Broenstrup, Arturo Vera Ponce De Leon, Phillip Pope, Sabina La Rosa, Giorgia La Barbera, Henrik Roager, Martin Laursen, Fabian Hammerle, Bianka Siewert, Ursula Peintner, Cuauhtemoc Licona-Cassani, Lorena Rodriguez-Orduña, Evelyn Rampler, Felina Hildebrand, Gunda Koellensperger, Harald Schoeny, Katharina Hohenwallner, Lisa Panzenboeck, Rachel Gregor, Ellis O'Neill, Eve Roxborough, Jane Odoi, Nicole Bale, Su Ding, Jaap S Sinninghe Damsté, Xueli Guan, Jerry Cui, Kou-San Ju, Denise Silva, Fernanda Silva, Gilvan da Silva, Hector Koolen, Carlismari Grundmann, Jason Clement, Hosein Mohimani, Kirk Broders, Kerry McPhail, Sidnee Ober-Singleton, Christopher Rath, Daniel McDonald, Rob Knight, Mingxun Wang	Research Square	2023-08-03	Abstract
Microbial short-chain fatty acids regulate drug seeking and transcriptional control in a model of cocaine seeking.	Katherine R Meckel, Sierra S Simpson, Arthur Godino, Emily G Peck, Jonathon P Sens, Michael Z Leonard, Olivier George, Erin S Calipari, Rebecca S Hofford, Drew D Kiraly	Neuropsychopharmacology : Official Publication Of The American College Of Neuropsychopharmacology	2023-08-02	Abstract
A modular plasmid toolkit applied in marine bacteria reveals functional insights during bacteria-stimulated metamorphosis.	Amanda T Alker, Morgan V Farrell, Alpher E Aspiras, Tiffany L Dunbar, Andriy Fedoriouk, Jeffrey E Jones, Sama R Mikhail, Gabriella Y Salcedo, Bradley S Moore, Nicholas J Shikuma	MBio	2023-08-02	Abstract
Common antibiotics, azithromycin and amoxicillin, affect gut metagenomics within a household.	Jessica Chopyk, Ana Georgina Cobián Güemes, Claudia Ramirez-Sanchez, Hedieh Attai, Melissa Ly, Marcus B Jones, Roland Liu, Chenyu Liu, Kun Yang, Xin M Tu, Shira R Abeles, Karen Nelson, David T Pride	BMC Microbiology	2023-08-02	Abstract
Gut-microbiome centered therapies for alcohol-associated liver disease.	Tannaz Ranjbarian, Bernd Schnabl	Seminars In Liver Disease	2023-08-01	Abstract
G protein-coupled receptors: A target for microbial metabolites and a mechanistic link to microbiome-immune-brain interactions.	Gajender Aleti, Emily A Troyer, Suzi Hong	Brain, Behavior, & Immunity - Health	2023-07-31	Abstract
Compounding Phages for Therapeutic Applications.	Ana Georgina Cobián Güemes, Tram Le, Maria Isabel Rojas, Nicole E Jacobson, Helena Villela, Katelyn McNair, Shr-Hau Hung, Lili Han, Lance Boling, Jessica Claire Octavio, Lorena Dominguez, Vito Adrian Cantú, Sinéad Archdeacon, Alejandro A Vega, Michelle A An, Hamza Hajama, Gregory Burkeen, Robert A Edwards, Douglas J Conrad, Forest Rohwer, Anca M Segall	Viruses	2023-07-30	Abstract
Roles for the RNA-Binding Protein Rbp2 in Regulating the Circadian Clock.	Briana M McKnight, Shannon Kang, Tam H Le, Mingxu Fang, Genelyn Carbonel, Esbeydi Rodriguez, Sutharsan Govindarajan, Nitsan Albocher-Kedem, Amanda L Tran, Nicholas R Duncan, Orna Amster-Choder, Susan S Golden, Susan E Cohen	Journal Of Biological Rhythms	2023-07-28	Abstract
Adaptive evolution of a minimal organism with a synthetic genome.	Troy E Sandberg, Kim S Wise, Christopher Dalldorf, Richard Szubin, Adam M Feist, John I Glass, Bernhard O Palsson	IScience	2023-07-28	Abstract
Greengenes2 unifies microbial data in a single reference tree.	Daniel McDonald, Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio Gonzalez, James T Morton, Giorgia Nicolaou, Donovan H Parks, Søren M Karst, Mads Albertsen, Philip Hugenholtz, Todd DeSantis, Se Jin Song, Andrew Bartko, Aki S Havulinna, Pekka Jousilahti, Susan Cheng, Michael Inouye, Teemu Niiranen, Mohit Jain, Veikko Salomaa, Leo Lahti, Siavash Mirarab, Rob Knight	Nature Biotechnology	2023-07-27	Abstract
Generation of accurate, expandable phylogenomic trees with uDance.	Metin Balaban, Yueyu Jiang, Qiyun Zhu, Daniel McDonald, Rob Knight, Siavash Mirarab	Nature Biotechnology	2023-07-27	Abstract
miR-15/16 clusters restrict effector Treg cell differentiation and function.	Jiayi Dong, William J Huth, Nimi Marcel, Ziyue Zhang, Ling-Li Lin, Li-Fan Lu	The Journal Of Experimental Medicine	2023-07-27	Abstract
Murine Models of Salmonella Infection.	Gregory T Walker, Romana R Gerner, Sean-Paul Nuccio, Manuela Raffatellu	Current Protocols	2023-07-24	Abstract
Cationic-nanogel nasal vaccine containing the ectodomain of RSV-small hydrophobic protein induces protective immunity in rodents.	Shingo Umemoto, Rika Nakahashi-Ouchida, Yoshikazu Yuki, Shiho Kurokawa, Tomonori Machita, Yohei Uchida, Hiromi Mori, Tomoyuki Yamanoue, Takehiko Shibata, Shin-Ichi Sawada, Kazuya Ishige, Takashi Hirano, Kohtaro Fujihashi, Kazunari Akiyoshi, Yosuke Kurashima, Daisuke Tokuhara, Peter B Ernst, Masashi Suzuki, Hiroshi Kiyono	NPJ Vaccines	2023-07-24	Abstract
Fecal virome transplantation is sufficient to alter fecal microbiota and drive lean and obese body phenotypes in mice.	Joshua M Borin, Roland Liu, Yanhan Wang, Tsung-Chin Wu, Jessica Chopyk, Lina Huang, Peiting Kuo, Chandrabali Ghose, Justin R Meyer, Xin M Tu, Bernd Schnabl, David T Pride	Gut Microbes	2023-07-21	Abstract
A comprehensive Drosophila resource to identify key functional interactions between SARS-CoV-2 factors and host proteins.	Annabel Guichard, Shenzhao Lu, Oguz Kanca, Daniel Bressan, Yan Huang, Mengqi Ma, Sara Sanz Juste, Jonathan C Andrews, Kristy L Jay, Marketta Sneider, Ruth Schwartz, Mei-Chu Huang, Danqing Bei, Hongling Pan, Liwen Ma, Wen-Wen Lin, Ankush Auradkar, Pranjali Bhagwat, Soo Park, Kenneth H Wan, Takashi Ohsako, Toshiyuki Takano-Shimizu, Susan E Celniker, Michael F Wangler, Shinya Yamamoto, Hugo J Bellen, Ethan Bier	Cell Reports	2023-07-20	Abstract
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).	Sanjay Jain, Liming Pei, Jeffrey M Spraggins, Michael Angelo, James P Carson, Nils Gehlenborg, Fiona Ginty, Joana P Gonçalves, James S Hagood, John W Hickey, Neil L Kelleher, Louise C Laurent, Shin Lin, Yiing Lin, Huiping Liu, Alexandra Naba, Ernesto S Nakayasu, Wei-Jun Qian, Andrea Radtke, Paul Robson, Brent R Stockwell, Raf Van de Plas, Ioannis S Vlachos, Mowei Zhou, , Katy Börner, Michael P Snyder	Nature Cell Biology	2023-07-19	Abstract
An atlas of healthy and injured cell states and niches in the human kidney.	Blue B Lake, Rajasree Menon, Seth Winfree, Qiwen Hu, Ricardo Melo Ferreira, Kian Kalhor, Daria Barwinska, Edgar A Otto, Michael Ferkowicz, Dinh Diep, Nongluk Plongthongkum, Amanda Knoten, Sarah Urata, Laura H Mariani, Abhijit S Naik, Sean Eddy, Bo Zhang, Yan Wu, Diane Salamon, James C Williams, Xin Wang, Karol S Balderrama, Paul J Hoover, Evan Murray, Jamie L Marshall, Teia Noel, Anitha Vijayan, Austin Hartman, Fei Chen, Sushrut S Waikar, Sylvia E Rosas, Francis P Wilson, Paul M Palevsky, Krzysztof Kiryluk, John R Sedor, Robert D Toto, Chirag R Parikh, Eric H Kim, Rahul Satija, Anna Greka, Evan Z Macosko, Peter V Kharchenko, Joseph P Gaut, Jeffrey B Hodgin, , Michael T Eadon, Pierre C Dagher, Tarek M El-Achkar, Kun Zhang, Matthias Kretzler, Sanjay Jain	Nature	2023-07-19	Abstract
Congenital CMV associated with diaphragm dysfunction: a rare cause of tachypnoea.	Rebecca Carter, Maayan Yakir, Julie Ryu, Katherine Weiss	BMJ Case Reports	2023-07-19	Abstract
Multiple pals gene modules control a balance between immunity and development in Caenorhabditis elegans.	Vladimir Lažetić, Michael J Blanchard, Theresa Bui, Emily R Troemel	PLoS Pathogens	2023-07-18	Abstract
Immunization with lytic polysaccharide monooxygenase CbpD induces protective immunity against pneumonia.	Fatemeh Askarian, Chih-Ming Tsai, Gabriele Cordara, Raymond H Zurich, Elisabet Bjånes, Ole Golten, Henrik Vinther Sørensen, Armin Kousha, Angela Meier, Elvis Chikwati, Jack-Ansgar Bruun, Judith Anita Ludviksen, Biswa Choudhury, Desmond Trieu, Stanley Davis, Per Kristian Thorén Edvardsen, Tom Eirik Mollnes, George Y Liu, Ute Krengel, Douglas J Conrad, Gustav Vaaje-Kolstad, Victor Nizet	Proceedings Of The National Academy Of Sciences Of The United States Of America	2023-07-17	Abstract
Mpox vaccine and infection-driven human immune signatures: an immunological analysis of an observational study.	Hallie Cohn, Nathaniel Bloom, Gianna Y Cai, Jordan J Clark, Alison Tarke, Maria C Bermúdez-González, Deena R Altman, Luz Amarilis Lugo, Francisco Pereira Lobo, Susanna Marquez, , Jin-Qiu Chen, Wenlin Ren, Lili Qin, Jennifer L Yates, Danielle T Hunt, William T Lee, Shane Crotty, Florian Krammer, Alba Grifoni, Alessandro Sette, Viviana Simon, Camila H Coelho	The Lancet. Infectious Diseases	2023-07-17	Abstract
Longitudinal flux balance analyses of a patient with episodic colonic inflammation reveals microbiome metabolic dynamics.	Arianna Basile, Almut Heinken, Johannes Hertel, Larry Smarr, Weizhong Li, Laura Treu, Giorgio Valle, Stefano Campanaro, Ines Thiele	Gut Microbes	2023-07-14	Abstract
Structural and photophysical characterization of the small ultra-red fluorescent protein.	Atanu Maiti, Cosmo Z Buffalo, Saumya Saurabh, Felipe Montecinos-Franjola, Justin S Hachey, William J Conlon, Geraldine N Tran, Bakar Hassan, Kylie J Walters, Mikhail Drobizhev, W E Moerner, Partho Ghosh, Hiroshi Matsuo, Roger Y Tsien, John Y Lin, Erik A Rodriguez	Nature Communications	2023-07-12	Abstract
Structure-based discovery of thiosemicarbazones as SARS-CoV-2 main protease inhibitors.	Vinícius Gonçalves Maltarollo, Elany Barbosa da Silva, Thales Kronenberger, Marina Mol Sena Andrade, Gabriel V de Lima Marques, Nereu J Cândido Oliveira, Lucianna H Santos, Celso de Oliveira Rezende Júnior, Ana C Cassiano Martinho, Danielle Skinner, Pavla Fajtová, Thaís H M Fernandes, Eduardo da Silveira Dos Santos, Poliana A Rodrigues Gazolla, Ana P Martins de Souza, Milene Lopes da Silva, Fabíola S Dos Santos, Stefânia N Lavorato, Ana C Oliveira Bretas, Diogo Teixeira Carvalho, Lucas Lopardi Franco, Stephanie Luedtke, Miriam A Giardini, Antti Poso, Luiz C Dias, Larissa M Podust, Ricardo J Alves, James McKerrow, Saulo F Andrade, Róbson R Teixeira, Jair L Siqueira-Neto, Anthony O'Donoghue, Renata B de Oliveira, Rafaela S Ferreira	Future Medicinal Chemistry	2023-07-12	Abstract
Nanoscaled Discovery of a Shunt Rifamycin from Using a Three-Color GFP-Tagged Macrophage Infection Assay.	Nhan T Pham, Joana Alves, Fiona A Sargison, Reiko Cullum, Jan Wildenhain, William Fenical, Mark S Butler, David A Mead, Brendan M Duggan, J Ross Fitzgerald, James J La Clair, Manfred Auer	ACS Infectious Diseases	2023-07-11	Abstract
9,10-KODA, an α-ketol produced by the tonoplast-localized 9-lipoxygenase ZmLOX5, plays a signaling role in maize defense against insect herbivory.	Peiguo Yuan, Eli Borrego, Yong-Soon Park, Zachary Gorman, Pei-Cheng Huang, Jordan Tolley, Shawn A Christensen, Jantana Blanford, Aruna Kilaru, Robert Meeley, Hisashi Koiwa, Stefan Vidal, Alisa Huffaker, Eric Schmelz, Michael V Kolomiets	Molecular Plant	2023-07-11	Abstract
Association of polygenic score and the involvement of cholinergic and glutamatergic pathways with lithium treatment response in patients with bipolar disorder.	Azmeraw T Amare, Anbupalam Thalamuthu, Klaus Oliver Schubert, Janice M Fullerton, Muktar Ahmed, Simon Hartmann, Sergi Papiol, Urs Heilbronner, Franziska Degenhardt, Fasil Tekola-Ayele, Liping Hou, Yi-Hsiang Hsu, Tatyana Shekhtman, Mazda Adli, Nirmala Akula, Kazufumi Akiyama, Raffaella Ardau, Bárbara Arias, Jean-Michel Aubry, Roland Hasler, Hélène Richard-Lepouriel, Nader Perroud, Lena Backlund, Abesh Kumar Bhattacharjee, Frank Bellivier, Antonio Benabarre, Susanne Bengesser, Joanna M Biernacka, Armin Birner, Cynthia Marie-Claire, Pablo Cervantes, Hsi-Chung Chen, Caterina Chillotti, Sven Cichon, Cristiana Cruceanu, Piotr M Czerski, Nina Dalkner, Maria Del Zompo, J Raymond DePaulo, Bruno Étain, Stephane Jamain, Peter Falkai, Andreas J Forstner, Louise Frisen, Mark A Frye, Sébastien Gard, Julie S Garnham, Fernando S Goes, Maria Grigoroiu-Serbanescu, Andreas J Fallgatter, Sophia Stegmaier, Thomas Ethofer, Silvia Biere, Kristiyana Petrova, Ceylan Schuster, Kristina Adorjan, Monika Budde, Maria Heilbronner, Janos L Kalman, Mojtaba Oraki Kohshour, Daniela Reich-Erkelenz, Sabrina K Schaupp, Eva C Schulte, Fanny Senner, Thomas Vogl, Ion-George Anghelescu, Volker Arolt, Udo Dannlowski, Detlef Dietrich, Christian Figge, Markus Jäger, Fabian U Lang, Georg Juckel, Carsten Konrad, Jens Reimer, Max Schmauß, Andrea Schmitt, Carsten Spitzer, Martin von Hagen, Jens Wiltfang, Jörg Zimmermann, Till F M Andlauer, Andre Fischer, Felix Bermpohl, Philipp Ritter, Silke Matura, Anna Gryaznova, Irina Falkenberg, Cüneyt Yildiz, Tilo Kircher, Julia Schmidt, Marius Koch, Kathrin Gade, Sarah Trost, Ida S Haussleiter, Martin Lambert, Anja C Rohenkohl, Vivien Kraft, Paul Grof, Ryota Hashimoto, Joanna Hauser, Stefan Herms, Per Hoffmann, Esther Jiménez, Jean-Pierre Kahn, Layla Kassem, Po-Hsiu Kuo, Tadafumi Kato, John Kelsoe, Sarah Kittel-Schneider, Ewa Ferensztajn-Rochowiak, Barbara König, Ichiro Kusumi, Gonzalo Laje, Mikael Landén, Catharina Lavebratt, Marion Leboyer, Susan G Leckband, Alfonso Tortorella, Mirko Manchia, Lina Martinsson, Michael J McCarthy, Susan McElroy, Francesc Colom, Vincent Millischer, Marina Mitjans, Francis M Mondimore, Palmiero Monteleone, Caroline M Nievergelt, Markus M Nöthen, Tomas Novák, Claire O'Donovan, Norio Ozaki, Andrea Pfennig, Claudia Pisanu, James B Potash, Andreas Reif, Eva Reininghaus, Guy A Rouleau, Janusz K Rybakowski, Martin Schalling, Peter R Schofield, Barbara W Schweizer, Giovanni Severino, Paul D Shilling, Katzutaka Shimoda, Christian Simhandl, Claire M Slaney, Alessio Squassina, Thomas Stamm, Pavla Stopkova, Mario Maj, Gustavo Turecki, Eduard Vieta, Julia Veeh, Stephanie H Witt, Adam Wright, Peter P Zandi, Philip B Mitchell, Michael Bauer, Martin Alda, Marcella Rietschel, Francis J McMahon, Thomas G Schulze, Scott R Clark, Bernhard T Baune	Molecular Psychiatry	2023-07-11	Abstract
Pangenome analysis reveals the genetic basis for taxonomic classification of the Lactobacillaceae family.	Akanksha Rajput, Siddharth M Chauhan, Omkar S Mohite, Jason C Hyun, Omid Ardalani, Leonie J Jahn, Morten Oa Sommer, Bernhard O Palsson	Food Microbiology	2023-07-08	Abstract
Bacterial cytological profiling reveals interactions between jumbo phage φKZ infection and cell wall active antibiotics in Pseudomonas aeruginosa.	Hannah Tsunemoto, Joseph Sugie, Eray Enustun, Kit Pogliano, Joe Pogliano	PloS One	2023-07-07	Abstract
Antigen pressure from two founder viruses induces multiple insertions at a single antibody position to generate broadly neutralizing HIV antibodies.	Collin Joyce, Sasha Murrell, Ben Murrell, Oluwarotimi Omorodion, Lorena S Ver, Nancy Carrico, Raiza Bastidas, Rebecca Nedellec, Michael Bick, Jordan Woehl, Fangzhu Zhao, Alison Burns, Shawn Barman, Michael Appel, Alejandra Ramos, Lalinda Wickramasinghe, Kemal Eren, Thomas Vollbrecht, Davey M Smith, Sergei L Kosakovsky Pond, Ryan McBride, Charli Worth, Facundo Batista, Devin Sok, , Pascal Poignard, Bryan Briney, Ian A Wilson, Elise Landais, Dennis R Burton	PLoS Pathogens	2023-06-29	Abstract
A conserved three-dimensional pattern in a Streptococcus pyogenes M protein immunogen elicits M type cross-reactivity.	Kuei-Chen Wang, Eziz Kuliyev, Victor Nizet, Partho Ghosh	The Journal Of Biological Chemistry	2023-06-28	Abstract
Focusing antibody responses to the fusion peptide in rhesus macaques.	Christopher A Cottrell, Payal P Pratap, Kimberly M Cirelli, Diane G Carnathan, Chiamaka A Enemuo, Aleksandar Antanasijevic, Gabriel Ozorowski, Leigh M Sewall, Hongmei Gao, Kelli M Greene, Joel D Allen, Julia T Ngo, Yury Choe, Bartek Nogal, Murillo Silva, Jinal Bhiman, Matthias Pauthner, Darrell J Irvine, David Montefiori, Max Crispin, Dennis R Burton, Guido Silvestri, Shane Crotty, Andrew B Ward	BioRxiv : The Preprint Server For Biology	2023-06-27	Abstract
Human milk immune factors, maternal nutritional status, and infant sex: The INSPIRE study.	Beatrice Caffé, Aaron Blackwell, Bethaney D Fehrenkamp, Janet E Williams, Ryan M Pace, Kimberly A Lackey, Lorena Ruiz, Juan M Rodríguez, Mark A McGuire, James A Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, Linda J Kvist, Gloria E Otoo, Rossina G Pareja, Lars Bode, Dubale Gebeyehu, Debela K Gindola, Sarah Boothman, Katherine Flores, Michelle K McGuire, Courtney L Meehan	American Journal Of Human Biology : The Official Journal Of The Human Biology Council	2023-06-26	Abstract
Multi-level analysis of the gut-brain axis shows autism spectrum disorder-associated molecular and microbial profiles.	James T Morton, Dong-Min Jin, Robert H Mills, Yan Shao, Gibraan Rahman, Daniel McDonald, Qiyun Zhu, Metin Balaban, Yueyu Jiang, Kalen Cantrell, Antonio Gonzalez, Julie Carmel, Linoy Mia Frankiensztajn, Sandra Martin-Brevet, Kirsten Berding, Brittany D Needham, María Fernanda Zurita, Maude David, Olga V Averina, Alexey S Kovtun, Antonio Noto, Michele Mussap, Mingbang Wang, Daniel N Frank, Ellen Li, Wenhao Zhou, Vassilios Fanos, Valery N Danilenko, Dennis P Wall, Paúl Cárdenas, Manuel E Baldeón, Sébastien Jacquemont, Omry Koren, Evan Elliott, Ramnik J Xavier, Sarkis K Mazmanian, Rob Knight, Jack A Gilbert, Sharon M Donovan, Trevor D Lawley, Bob Carpenter, Richard Bonneau, Gaspar Taroncher-Oldenburg	Nature Neuroscience	2023-06-26	Abstract
Dietary weight loss-induced improvements in metabolic function are enhanced by exercise in people with obesity and prediabetes.	Joseph W Beals, Brandon D Kayser, Gordon I Smith, George G Schweitzer, Kyleigh Kirbach, Monica L Kearney, Jun Yoshino, Gibraan Rahman, Rob Knight, Bruce W Patterson, Samuel Klein	Nature Metabolism	2023-06-26	Abstract
Large library docking for novel SARS-CoV-2 main protease non-covalent and covalent inhibitors.	Elissa A Fink, Conner Bardine, Stefan Gahbauer, Isha Singh, Tyler Detomasi, Kris White, Shuo Gu, Xiaobo Wan, Jun Chen, Beatrice Ary, Isabella Glenn, Joseph O'Connell, Henry O'Donnell, Pavla Fajtová, Jiankun Lyu, Seth Vigneron, Nicholas J Young, Ivan S Kondratov, Arghavan Alisoltani, Lacy M Simons, Ramon Lorenzo-Redondo, Egon A Ozer, Judd F Hultquist, Anthony J O'Donoghue, Yurii Moroz, Jack Taunton, Adam R Renslo, John J Irwin, Adolfo García-Sastre, Brian K Shoichet, Charles S Craik	Protein Science : A Publication Of The Protein Society	2023-06-24	Abstract
Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution.	Caitriona Brennan, Rodolfo A Salido, Pedro Belda-Ferre, MacKenzie Bryant, Charles Cowart, Maria D Tiu, Antonio González, Daniel McDonald, Caitlin Tribelhorn, Amir Zarrinpar, Rob Knight	MSystems	2023-06-23	Abstract
Chemoproteomic identification of a DPP4 homolog in Bacteroides thetaiotaomicron.	Laura J Keller, Taylor H Nguyen, Lawrence J Liu, Brianna M Hurysz, Markus Lakemeyer, Matteo Guerra, Danielle J Gelsinger, Rachael Chanin, Nhi Ngo, Kenneth M Lum, Franco Faucher, Phillip Ipock, Micah J Niphakis, Ami S Bhatt, Anthony J O'Donoghue, Kerwyn Casey Huang, Matthew Bogyo	Nature Chemical Biology	2023-06-22	Abstract
Metagenomics reveals novel microbial signatures of farm exposures in house dust.	Ziyue Wang, Kathryn R Dalton, Mikyeong Lee, Christine G Parks, Laura E Beane Freeman, Qiyun Zhu, Antonio González, Rob Knight, Shanshan Zhao, Alison A Motsinger-Reif, Stephanie J London	Frontiers In Microbiology	2023-06-21	Abstract
Associations of Circulating Estrogens and Estrogen Metabolites with Fecal and Oral Microbiome in Postmenopausal Women in the Ghana Breast Health Study.	Zeni Wu, Ruth M Pfeiffer, Doratha A Byrd, Yunhu Wan, Daniel Ansong, Joe-Nat Clegg-Lamptey, Beatrice Wiafe-Addai, Lawrence Edusei, Ernest Adjei, Nicholas Titiloye, Florence Dedey, Francis Aitpillah, Joseph Oppong, Verna Vanderpuye, Ernest Osei-Bonsu, Casey L Dagnall, Kristine Jones, Amy Hutchinson, Belynda D Hicks, Thomas U Ahearn, Rob Knight, Richard Biritwum, Joel Yarney, Seth Wiafe, Baffour Awuah, Kofi Nyarko, Montserrat Garcia-Closas, Rashmi Sinha, Jonine D Figueroa, Louise A Brinton, Britton Trabert, Emily Vogtmann	Microbiology Spectrum	2023-06-21	Abstract
Global branches and local states of the human gut microbiome define associations with environmental and intrinsic factors.	Julien Tap, Franck Lejzerowicz, Aurélie Cotillard, Matthieu Pichaud, Daniel McDonald, Se Jin Song, Rob Knight, Patrick Veiga, Muriel Derrien	Nature Communications	2023-06-20	Abstract
Expanding the Utility of Bioinformatic Data for the Full Stereostructural Assignments of Marinolides A and B, 24- and 26-Membered Macrolactones Produced by a Chemically Exceptional Marine-Derived Bacterium.	Min Cheol Kim, Jaclyn M Winter, Reiko Cullum, Alexander J Smith, William Fenical	Marine Drugs	2023-06-20	Abstract
Activation mechanism and activity of globupain, a thermostable C11 protease from the Arctic Mid-Ocean Ridge hydrothermal system.	Victoria Røyseth, Brianna M Hurysz, Anna-Karina Kaczorowska, Sebastian Dorawa, Anita-Elin Fedøy, Hasan Arsın, Mateus Sá M Serafim, Samuel A Myers, Olesia Werbowy, Tadeusz Kaczorowski, Runar Stokke, Anthony J O'Donoghue, Ida Helene Steen	Frontiers In Microbiology	2023-06-19	Abstract
Bacteriophage Therapy of Multidrug-resistant Achromobacter in an 11-Year-old Boy With Cystic Fibrosis Assessed by Metagenome Analysis.	John S Bradley, Hamza Hajama, Kathryn Akong, Mary Jordan, Dayna Stout, Ryan S Rowe, Douglas J Conrad, Sara Hingtgen, Anca M Segall	The Pediatric Infectious Disease Journal	2023-06-19	Abstract
A pharmacoproteomic landscape of organotypic intervention responses in Gram-negative sepsis.	Tirthankar Mohanty, Christofer A Q Karlsson, Yashuan Chao, Erik Malmström, Eleni Bratanis, Andrietta Grentzmann, Martina Mørch, Victor Nizet, Lars Malmström, Adam Linder, Oonagh Shannon, Johan Malmström	Nature Communications	2023-06-17	Abstract
ants promote fungus garden hygiene using -derived metabolite cues.	Kathleen E Kyle, Sara P Puckett, Andrés Mauricio Caraballo-Rodríguez, José Rivera-Chávez, Robert M Samples, Cody E Earp, Huzefa A Raja, Cedric J Pearce, Madeleine Ernst, Justin J J van der Hooft, Madison E Adams, Nicholas H Oberlies, Pieter C Dorrestein, Jonathan L Klassen, Marcy J Balunas	Proceedings Of The National Academy Of Sciences Of The United States Of America	2023-06-15	Abstract
Host and Water Microbiota Are Differentially Linked to Potential Human Pathogen Accumulation in Oysters.	Rachel E Diner, Amy Zimmer-Faust, Emily Cooksey, Sarah Allard, Sho M Kodera, Emily Kunselman, Yash Garodia, Marc P Verhougstraete, Andrew E Allen, John Griffith, Jack A Gilbert	Applied And Environmental Microbiology	2023-06-15	Abstract
The gut-liver axis and gut microbiota in health and liver disease.	Cynthia L Hsu, Bernd Schnabl	Nature Reviews. Microbiology	2023-06-14	Abstract
Elucidating the CodY regulon in USA300 substrains TCH1516 and LAC.	Ye Gao, Saugat Poudel, Yara Seif, Zeyang Shen, Bernhard O Palsson	MSystems	2023-06-13	Abstract
Immune resilience despite inflammatory stress promotes longevity and favorable health outcomes including resistance to infection.	Sunil K Ahuja, Muthu Saravanan Manoharan, Grace C Lee, Lyle R McKinnon, Justin A Meunier, Maristella Steri, Nathan Harper, Edoardo Fiorillo, Alisha M Smith, Marcos I Restrepo, Anne P Branum, Matthew J Bottomley, Valeria Orrù, Fabio Jimenez, Andrew Carrillo, Lavanya Pandranki, Caitlyn A Winter, Lauryn A Winter, Alvaro A Gaitan, Alvaro G Moreira, Elizabeth A Walter, Guido Silvestri, Christopher L King, Yong-Tang Zheng, Hong-Yi Zheng, Joshua Kimani, T Blake Ball, Francis A Plummer, Keith R Fowke, Paul N Harden, Kathryn J Wood, Martin T Ferris, Jennifer M Lund, Mark T Heise, Nigel Garrett, Kristen R Canady, Salim S Abdool Karim, Susan J Little, Sara Gianella, Davey M Smith, Scott Letendre, Douglas D Richman, Francesco Cucca, Hanh Trinh, Sandra Sanchez-Reilly, Joan M Hecht, Jose A Cadena Zuluaga, Antonio Anzueto, Jacqueline A Pugh, , Brian K Agan, Robert Root-Bernstein, Robert A Clark, Jason F Okulicz, Weijing He	Nature Communications	2023-06-13	Abstract
Determination of Effect Sizes for Power Analysis for Microbiome Studies Using Large Microbiome Databases.	Gibraan Rahman, Daniel McDonald, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Lingjing Jiang, Climent Casals-Pascual, Daniel Hakim, Amanda Hazel Dilmore, Brent Nowinski, Shyamal Peddada, Rob Knight	Genes	2023-06-09	Abstract
Elucidation of independently modulated genes in reveals carbon sources that control its expression of hemolytic toxins.	Yujiro Hirose, Saugat Poudel, Anand V Sastry, Kevin Rychel, Cameron R Lamoureux, Richard Szubin, Daniel C Zielinski, Hyun Gyu Lim, Nitasha D Menon, Helena Bergsten, Satoshi Uchiyama, Tomoki Hanada, Shigetada Kawabata, Bernhard O Palsson, Victor Nizet	MSystems	2023-06-06	Abstract
Systems biology of competency in Vibrio natriegens is revealed by applying novel data analytics to the transcriptome.	Jongoh Shin, Kevin Rychel, Bernhard O Palsson	Cell Reports	2023-06-06	Abstract
Perceived risks and benefits of enrolling people with HIV at the end of life in cure research in Southern California, United States.	Karine Dubé, Brittany Shelton, Hursch Patel, Samuel O Ndukwe, Susanna Concha-Garcia, Cheryl Dullano, Stephanie Solso, Steven Hendrickx, Andy Kaytes, Jeff Taylor, Thomas J Villa, Susan J Little, Patricia K Riggs, David Lessard, Anish K Arora, Cecilia T Costiniuk, Shadi Eskaf, Davey M Smith, Sara Gianella	Journal Of Virus Eradication	2023-06-05	Abstract
Metabolomics of bacterial-fungal pairwise interactions reveal conserved molecular mechanisms.	Gordon T Luu, Jessica C Little, Emily C Pierce, Manon Morin, Celine A Ertekin, Benjamin E Wolfe, Oliver Baars, Rachel J Dutton, Laura M Sanchez	The Analyst	2023-06-01	Abstract
TEMPORARILY REMOVED: Diagnosis of multisystem inflammatory syndrome in children by a whole-blood transcriptional signature.	Heather R Jackson, Luca Miglietta, Dominic Habgood-Coote, Giselle D'Souza, Priyen Shah, Samuel Nichols, Ortensia Vito, Oliver Powell, Maisey Salina Davidson, Chisato Shimizu, Philipp K A Agyeman, Coco R Beudeker, Karen Brengel-Pesce, Enitan D Carrol, Michael J Carter, Tisham De, Irini Eleftheriou, Marieke Emonts, Cristina Epalza, Pantelis Georgiou, Ronald De Groot, Katy Fidler, Colin Fink, Daniëlle van Keulen, Taco Kuijpers, Henriette Moll, Irene Papatheodorou, Stephane Paulus, Marko Pokorn, Andrew J Pollard, Irene Rivero-Calle, Pablo Rojo, Fatou Secka, Luregn J Schlapbach, Adriana H Tremoulet, Maria Tsolia, Effua Usuf, Michiel Van Der Flier, Ulrich Von Both, Clementien Vermont, Shunmay Yeung, Dace Zavadska, Werner Zenz, Lachlan J M Coin, Aubrey Cunnington, Jane C Burns, Victoria Wright, Federico Martinon-Torres, Jethro A Herberg, Jesus Rodriguez Manzano, Myrsini Kaforou, Michael Levin,	Journal Of The Pediatric Infectious Diseases Society	2023-05-31	Abstract
Gut microbiota, circulating inflammatory markers and metabolites, and carotid artery atherosclerosis in HIV infection.	Zheng Wang, Brandilyn A Peters, MacKenzie Bryant, David B Hanna, Tara Schwartz, Tao Wang, Christopher C Sollecito, Mykhaylo Usyk, Evan Grassi, Fanua Wiek, Lauren St Peter, Wendy S Post, Alan L Landay, Howard N Hodis, Kathleen M Weber, Audrey French, Elizabeth T Golub, Jason Lazar, Deborah Gustafson, Anjali Sharma, Kathryn Anastos, Clary B Clish, Robert D Burk, Robert C Kaplan, Rob Knight, Qibin Qi	Microbiome	2023-05-27	Abstract
Responsiveness to Vedolizumab Therapy in Ulcerative Colitis is Associated With Alterations in Immune Cell-Cell Communications.	Paul Hsu, Eunice J Choi, Shefali A Patel, William H Wong, Jocelyn G Olvera, Priscilla Yao, Yi Chia Liu, Matthew S Tsai, Wei Wang, Brigid S Boland, John T Chang	Inflammatory Bowel Diseases	2023-05-26	Abstract
M-PAST score is better than MAST score for the diagnosis of active fibrotic NASH.	Kento Imajo, Yusuke Saigusa, Takashi Kobayashi, Koki Nagai, Shinya Nishida, Nobuyoshi Kawamura, Hiroyoshi Doi, Michihiro Iwaki, Asako Nogami, Yasushi Honda, Takaomi Kessoku, Yuji Ogawa, Hiroyuki Kirikoshi, Satoshi Yasuda, Hidenori Toyoda, Hideki Hayashi, Shigehiro Kokubu, Daisuke Utsunomiya, Hirokazu Takahashi, Shinichi Aishima, Beom Kyung Kim, Nobuharu Tamaki, Satoru Saito, Masato Yoneda, Rohit Loomba, Atsushi Nakajima	Hepatology Research : The Official Journal Of The Japan Society Of Hepatology	2023-05-26	Abstract
Divergent metabolic programmes control two populations of MAIT cells that protect the lung.	Thomas Riffelmacher, Mallory Paynich Murray, Chantal Wientjens, Shilpi Chandra, Viankail Cedillo-Castelán, Ting-Fang Chou, Sara McArdle, Christopher Dillingham, Jordan Devereaux, Aaron Nilsen, Simon Brunel, David M Lewinsohn, Jeff Hasty, Gregory Seumois, Christopher A Benedict, Pandurangan Vijayanand, Mitchell Kronenberg	Nature Cell Biology	2023-05-25	Abstract
You are what you excrete.	Caitlin Guccione, Daniel McDonald, Rebecca Fielding-Miller, Kit Curtius, Rob Knight	Nature Microbiology	2023-05-25	Abstract
A Community-Driven Framework to Prioritize the Use of Donated Human Biological Materials in the Context of HIV Cure-Related Research at the End of Life.	Karine Dubé, Thomas J Villa, Jeff Taylor, Andy Kaytes, David J Moore, Susan J Little, Antoine Chaillon, Davey M Smith, Sara Gianella	Pathogens & Immunity	2023-05-24	Abstract
Microbiological assessment reveals that Salmonella, Shigella and Campylobacter infections are widespread in HIV infected and uninfected patients with diarrhea in Mozambique.	Delfina Fernandes Hlashwayo, Emília Virgínia Noormahomed, Leonilde Bahule, Constance Benson, Robert T Schooley, Betuel Sigaúque, Kim E Barrett, Custódio Gabriel Bila	PLOS Global Public Health	2023-05-22	Abstract
Depth drives the distribution of microbial ecological functions in the coastal western Antarctic Peninsula.	Avishek Dutta, Elizabeth Connors, Rebecca Trinh, Natalia Erazo, Srishti Dasarathy, Hugh W Ducklow, Deborah K Steinberg, Oscar M Schofield, Jeff S Bowman	Frontiers In Microbiology	2023-05-18	Abstract
Acute alcohol-associated hepatitis: Latest findings in non-invasive biomarkers and treatment.	Tomoo Yamazaki, Bernd Schnabl	Liver International : Official Journal Of The International Association For The Study Of The Liver	2023-05-15	Abstract
Transcriptional programming of CD4 T differentiation in viral infection balances effector- and memory-associated gene expression.	Quynh P Nguyen, Kennidy K Takehara, Tianda Z Deng, Shannon O'Shea, Maximilian Heeg, Kyla D Omilusik, J Justin Milner, Sara Quon, Matthew E Pipkin, Jinyong Choi, Shane Crotty, Ananda W Goldrath	Science Immunology	2023-05-12	Abstract
Tryptophan metabolism, gut microbiota, and carotid artery plaque in women with and without HIV infection.	Kai Luo, Zheng Wang, Brandilyn A Peters, David B Hanna, Tao Wang, Christopher C Sollecito, Evan Grassi, Fanua Wiek, Lauren St Peter, Mykhaylo Usyk, Wendy S Post, Alan L Landay, Howard N Hodis, Kathleen M Weber, Audrey French, Elizabeth T Golub, Jason Lazar, Deborah Gustafson, Anjali Sharma, Kathryn Anastos, Clary B Clish, Rob Knight, Robert C Kaplan, Robert D Burk, Qibin Qi	AIDS (London, England)	2023-05-12	Abstract
Competition between skin antimicrobial peptides and commensal bacteria in type 2 inflammation enables survival of S. aureus.	Teruaki Nakatsuji, Samantha L Brinton, Kellen J Cavagnero, Alan M O'Neill, Yang Chen, Tatsuya Dokoshi, Anna M Butcher, Olive C Osuoji, Faiza Shafiq, Josh L Espinoza, Christopher L Dupont, Tissa R Hata, Richard L Gallo	Cell Reports	2023-05-10	Abstract
Universal gut microbial relationships in the gut microbiome of wild baboons.	Kimberly E Roche, Johannes R Bjork, Mauna R Dasari, Laura Grieneisen, David A W A M Jansen, Trevor J Gould, Laurence R Gesquiere, Luis B Barreiro, Susan C Alberts, Ran Blekhman, Jack A Gilbert, Jenny Tung, Sayan Mukherjee, Elizabeth A Archie	ELife	2023-05-09	Abstract
Fecal cytolysin does not predict disease severity in acutely decompensated cirrhosis and acute-on-chronic liver failure.	Phillipp Hartmann, Sonja Lang, Robert Schierwagen, Sabine Klein, Michael Praktiknjo, Jonel Trebicka, Bernd Schnabl	Hepatobiliary & Pancreatic Diseases International : HBPD INT	2023-05-09	Abstract
Hepatic stellate cell stearoyl co-A desaturase activates leukotriene B4 receptor 2 - β-catenin cascade to promote liver tumorigenesis.	Sonal Sinha, Satoka Aizawa, Yasuhiro Nakano, Alexander Rialdi, Hye Yeon Choi, Rajan Shrestha, Stephanie Q Pan, Yibu Chen, Meng Li, Audrey Kapelanski-Lamoureux, Gregory Yochum, Linda Sher, Satdarshan Paul Monga, Anthoula Lazaris, Keigo Machida, Michael Karin, Ernesto Guccione, Hidekazu Tsukamoto	Nature Communications	2023-05-08	Abstract
E. coli allantoinase is activated by the downstream metabolic enzyme, glycerate kinase, and stabilizes the putative allantoin transporter by direct binding.	Irina A Rodionova, Ali Hosseinnia, Sunyoung Kim, Norman Goodacre, Li Zhang, Zhongge Zhang, Bernhard Palsson, Peter Uetz, Mohan Babu, Milton H Saier	Scientific Reports	2023-05-05	Abstract
Herbivorous Fish Microbiome Adaptations to Sulfated Dietary Polysaccharides.	Sheila Podell, Aaron Oliver, Linda Wegley Kelly, Wesley J Sparagon, Alvaro M Plominsky, Robert S Nelson, Lieve M L Laurens, Simona Augyte, Neil A Sims, Craig E Nelson, Eric E Allen	Applied And Environmental Microbiology	2023-05-03	Abstract
Evaluation of Autoantibody Binding to Cardiac Tissue in Multisystem Inflammatory Syndrome in Children and COVID-19 Vaccination-Induced Myocarditis.	Harsita Patel, Amalia Sintou, Rasheda A Chowdhury, Stephen Rothery, Alma Octavia Iacob, Sanjay Prasad, Peter P Rainer, Federico Martinón-Torres, Vanessa Sancho-Shimizu, Chisato Shimizu, Kirsten Dummer, Adriana H Tremoulet, Jane C Burns, Susanne Sattler, Michael Levin,	JAMA Network Open	2023-05-01	Abstract
Mast cell tolerance in the skin microenvironment to commensal bacteria is controlled by fibroblasts.	Anna Di Nardo, Yu-Ling Chang, Shahrzad Alimohammadi, Kana Masuda-Kuroki, Zhenping Wang, Krishna Sriram, Paul A Insel	Cell Reports	2023-04-28	Abstract
Identifying the core genome of the nucleus-forming bacteriophage family and characterization of Erwinia phage RAY.	Amy Prichard, Jina Lee, Thomas G Laughlin, Amber Lee, Kyle P Thomas, Annika E Sy, Tara Spencer, Aileen Asavavimol, Allison Cafferata, Mia Cameron, Nicholas Chiu, Demyan Davydov, Isha Desai, Gabriel Diaz, Melissa Guereca, Kiley Hearst, Leyi Huang, Emily Jacobs, Annika Johnson, Samuel Kahn, Ryan Koch, Adamari Martinez, Meliné Norquist, Tyler Pau, Gino Prasad, Katrina Saam, Milan Sandhu, Angel Jose Sarabia, Siena Schumaker, Aaron Sonin, Ariya Uyeno, Alison Zhao, Kevin D Corbett, Kit Pogliano, Justin Meyer, Julianne H Grose, Elizabeth Villa, Rachel Dutton, Joe Pogliano	Cell Reports	2023-04-28	Abstract
Evolutionary constraint and innovation across hundreds of placental mammals.	Matthew J Christmas, Irene M Kaplow, Diane P Genereux, Michael X Dong, Graham M Hughes, Xue Li, Patrick F Sullivan, Allyson G Hindle, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Ana M Breit, Mark Diekhans, Cornelia Fanter, Nicole M Foley, Daniel B Goodman, Linda Goodman, Kathleen C Keough, Bogdan Kirilenko, Amanda Kowalczyk, Colleen Lawless, Abigail L Lind, Jennifer R S Meadows, Lucas R Moreira, Ruby W Redlich, Louise Ryan, Ross Swofford, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Ashley R Brown, Joana Damas, Kaili Fan, John Gatesy, Jenna Grimshaw, Jeremy Johnson, Sergey V Kozyrev, Alyssa J Lawler, Voichita D Marinescu, Kathleen M Morrill, Austin Osmanski, Nicole S Paulat, BaDoi N Phan, Steven K Reilly, Daniel E Schäffer, Cynthia Steiner, Megan A Supple, Aryn P Wilder, Morgan E Wirthlin, James R Xue, , Bruce W Birren, Steven Gazal, Robert M Hubley, Klaus-Peter Koepfli, Tomas Marques-Bonet, Wynn K Meyer, Martin Nweeia, Pardis C Sabeti, Beth Shapiro, Arian F A Smit, Mark S Springer, Emma C Teeling, Zhiping Weng, Michael Hiller, Danielle L Levesque, Harris A Lewin, William J Murphy, Arcadi Navarro, Benedict Paten, Katherine S Pollard, David A Ray, Irina Ruf, Oliver A Ryder, Andreas R Pfenning, Kerstin Lindblad-Toh, Elinor K Karlsson	Science (New York, N.Y.)	2023-04-28	Abstract
The contribution of historical processes to contemporary extinction risk in placental mammals.	Aryn P Wilder, Megan A Supple, Ayshwarya Subramanian, Anish Mudide, Ross Swofford, Aitor Serres-Armero, Cynthia Steiner, Klaus-Peter Koepfli, Diane P Genereux, Elinor K Karlsson, Kerstin Lindblad-Toh, Tomas Marques-Bonet, Violeta Munoz Fuentes, Kathleen Foley, Wynn K Meyer, , Oliver A Ryder, Beth Shapiro	Science (New York, N.Y.)	2023-04-28	Abstract
Engineering longevity-design of a synthetic gene oscillator to slow cellular aging.	Zhen Zhou, Yuting Liu, Yushen Feng, Stephen Klepin, Lev S Tsimring, Lorraine Pillus, Jeff Hasty, Nan Hao	Science (New York, N.Y.)	2023-04-27	Abstract
Gut microbiome and atrial fibrillation-results from a large population-based study.	Joonatan Palmu, Christin S Börschel, Alfredo Ortega-Alonso, Lajos Markó, Michael Inouye, Pekka Jousilahti, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Friederike Gutmann, Dominik Linz, Veikko Salomaa, Aki S Havulinna, Sofia K Forslund, Rob Knight, Leo Lahti, Teemu Niiranen, Renate B Schnabel	EBioMedicine	2023-04-27	Abstract
Apoptotic cell death in disease-Current understanding of the NCCD 2023.	Ilio Vitale, Federico Pietrocola, Emma Guilbaud, Stuart A Aaronson, John M Abrams, Dieter Adam, Massimiliano Agostini, Patrizia Agostinis, Emad S Alnemri, Lucia Altucci, Ivano Amelio, David W Andrews, Rami I Aqeilan, Eli Arama, Eric H Baehrecke, Siddharth Balachandran, Daniele Bano, Nickolai A Barlev, Jiri Bartek, Nicolas G Bazan, Christoph Becker, Francesca Bernassola, Mathieu J M Bertrand, Marco E Bianchi, Mikhail V Blagosklonny, J Magarian Blander, Giovanni Blandino, Klas Blomgren, Christoph Borner, Carl D Bortner, Pierluigi Bove, Patricia Boya, Catherine Brenner, Petr Broz, Thomas Brunner, Rune Busk Damgaard, George A Calin, Michelangelo Campanella, Eleonora Candi, Michele Carbone, Didac Carmona-Gutierrez, Francesco Cecconi, Francis K-M Chan, Guo-Qiang Chen, Quan Chen, Youhai H Chen, Emily H Cheng, Jerry E Chipuk, John A Cidlowski, Aaron Ciechanover, Gennaro Ciliberto, Marcus Conrad, Juan R Cubillos-Ruiz, Peter E Czabotar, Vincenzo D'Angiolella, Mads Daugaard, Ted M Dawson, Valina L Dawson, Ruggero De Maria, Bart De Strooper, Klaus-Michael Debatin, Ralph J Deberardinis, Alexei Degterev, Giannino Del Sal, Mohanish Deshmukh, Francesco Di Virgilio, Marc Diederich, Scott J Dixon, Brian D Dynlacht, Wafik S El-Deiry, John W Elrod, Kurt Engeland, Gian Maria Fimia, Claudia Galassi, Carlo Ganini, Ana J Garcia-Saez, Abhishek D Garg, Carmen Garrido, Evripidis Gavathiotis, Motti Gerlic, Sourav Ghosh, Douglas R Green, Lloyd A Greene, Hinrich Gronemeyer, Georg Häcker, György Hajnóczky, J Marie Hardwick, Ygal Haupt, Sudan He, David M Heery, Michael O Hengartner, Claudio Hetz, David A Hildeman, Hidenori Ichijo, Satoshi Inoue, Marja Jäättelä, Ana Janic, Bertrand Joseph, Philipp J Jost, Thirumala-Devi Kanneganti, Michael Karin, Hamid Kashkar, Thomas Kaufmann, Gemma L Kelly, Oliver Kepp, Adi Kimchi, Richard N Kitsis, Daniel J Klionsky, Ruth Kluck, Dmitri V Krysko, Dagmar Kulms, Sharad Kumar, Sergio Lavandero, Inna N Lavrik, John J Lemasters, Gianmaria Liccardi, Andreas Linkermann, Stuart A Lipton, Richard A Lockshin, Carlos López-Otín, Tom Luedde, Marion MacFarlane, Frank Madeo, Walter Malorni, Gwenola Manic, Roberto Mantovani, Saverio Marchi, Jean-Christophe Marine, Seamus J Martin, Jean-Claude Martinou, Pier G Mastroberardino, Jan Paul Medema, Patrick Mehlen, Pascal Meier, Gerry Melino, Sonia Melino, Edward A Miao, Ute M Moll, Cristina Muñoz-Pinedo, Daniel J Murphy, Maria Victoria Niklison-Chirou, Flavia Novelli, Gabriel Núñez, Andrew Oberst, Dimitry Ofengeim, Joseph T Opferman, Moshe Oren, Michele Pagano, Theocharis Panaretakis, Manolis Pasparakis, Josef M Penninger, Francesca Pentimalli, David M Pereira, Shazib Pervaiz, Marcus E Peter, Paolo Pinton, Giovanni Porta, Jochen H M Prehn, Hamsa Puthalakath, Gabriel A Rabinovich, Krishnaraj Rajalingam, Kodi S Ravichandran, Markus Rehm, Jean-Ehrland Ricci, Rosario Rizzuto, Nirmal Robinson, Cecilia M P Rodrigues, Barak Rotblat, Carla V Rothlin, David C Rubinsztein, Thomas Rudel, Alessandro Rufini, Kevin M Ryan, Kristopher A Sarosiek, Akira Sawa, Emre Sayan, Kate Schroder, Luca Scorrano, Federico Sesti, Feng Shao, Yufang Shi, Giuseppe S Sica, John Silke, Hans-Uwe Simon, Antonella Sistigu, Anastasis Stephanou, Brent R Stockwell, Flavie Strapazzon, Andreas Strasser, Liming Sun, Erwei Sun, Qiang Sun, Gyorgy Szabadkai, Stephen W G Tait, Daolin Tang, Nektarios Tavernarakis, Carol M Troy, Boris Turk, Nicoletta Urbano, Peter Vandenabeele, Tom Vanden Berghe, Matthew G Vander Heiden, Jacqueline L Vanderluit, Alexei Verkhratsky, Andreas Villunger, Silvia von Karstedt, Anne K Voss, Karen H Vousden, Domagoj Vucic, Daniela Vuri, Erwin F Wagner, Henning Walczak, David Wallach, Ruoning Wang, Ying Wang, Achim Weber, Will Wood, Takahiro Yamazaki, Huang-Tian Yang, Zahra Zakeri, Joanna E Zawacka-Pankau, Lin Zhang, Haibing Zhang, Boris Zhivotovsky, Wenzhao Zhou, Mauro Piacentini, Guido Kroemer, Lorenzo Galluzzi	Cell Death And Differentiation	2023-04-26	Abstract
Sequence-structure-function relationships in the microbial protein universe.	Julia Koehler Leman, Pawel Szczerbiak, P Douglas Renfrew, Vladimir Gligorijevic, Daniel Berenberg, Tommi Vatanen, Bryn C Taylor, Chris Chandler, Stefan Janssen, Andras Pataki, Nick Carriero, Ian Fisk, Ramnik J Xavier, Rob Knight, Richard Bonneau, Tomasz Kosciolek	Nature Communications	2023-04-26	Abstract
Susceptibility antibiotic screening reveals high rates of multidrug resistance of Salmonella, Shigella and Campylobacter in HIV infected and uninfected patients from Mozambique.	Delfina F Hlashwayo, Emília V Noormahomed, Leonilde Bahule, Constance A Benson, Robert T Schooley, Betuel Sigaúque, Kim E Barrett, Custódio G Bila	BMC Infectious Diseases	2023-04-21	Abstract
Preface: Gamma-Delta T Cells in Inflammation Part 1.	Benjamin Bonavida, Vipin Kumar	Critical Reviews In Immunology	2023-04-21	Abstract
Crosstalk between skin microbiota and immune system in health and disease.	Qian Liu, Ryan Ranallo, Carmen Rios, Elizabeth A Grice, Kyung Moon, Richard L Gallo	Nature Immunology	2023-04-20	Abstract
Kernel-based genetic association analysis for microbiome phenotypes identifies host genetic drivers of beta-diversity.	Hongjiao Liu, Wodan Ling, Xing Hua, Jee-Young Moon, Jessica S Williams-Nguyen, Xiang Zhan, Anna M Plantinga, Ni Zhao, Angela Zhang, Rob Knight, Qibin Qi, Robert D Burk, Robert C Kaplan, Michael C Wu	Microbiome	2023-04-20	Abstract
Safety and Efficacy of Combination SARS-CoV-2 Neutralizing Monoclonal Antibodies Amubarvimab Plus Romlusevimab in Nonhospitalized Patients With COVID-19.	Teresa H Evering, Kara W Chew, Mark J Giganti, Carlee Moser, Mauricio Pinilla, David Alain Wohl, Judith S Currier, Joseph J Eron, Arzhang Cyrus Javan, Rachel Bender Ignacio, David Margolis, Qing Zhu, Ji Ma, Lijie Zhong, Li Yan, Ulises D'Andrea Nores, Keila Hoover, Bharat Mocherla, Manish C Choudhary, Rinki Deo, Justin Ritz, William A Fischer, Courtney V Fletcher, Jonathan Z Li, Michael D Hughes, Davey Smith, Eric S Daar,	Annals Of Internal Medicine	2023-04-18	Abstract
Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments.	Alexander B Chase, Alexander Bogdanov, Alyssa M Demko, Paul R Jensen	The ISME Journal	2023-04-15	Abstract
Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome.	Bryn C Taylor, Mohammadsobhan Sheikh Andalibi, Stephen Wandro, Kelly C Weldon, Gregory D Sepich-Poore, Carolina S Carpenter, Serena Fraraccio, Donald Franklin, Jennifer E Iudicello, Scott Letendre, Sara Gianella, Igor Grant, Ronald J Ellis, Robert K Heaton, Rob Knight, Austin D Swafford	Microorganisms	2023-04-14	Abstract
Toll-like receptor 2 activation in monocytes contributes to systemic inflammation and alcohol-associated liver disease in humans.	Luca Maccioni, Joyce Kasavuli, Sophie Leclercq, Boris Pirlot, Géraldine Laloux, Yves Horsmans, Isabelle Leclercq, Bernd Schnabl, Peter Stärkel	Hepatology Communications	2023-04-14	Abstract
An integrated view of anti-inflammatory and antifibrotic targets for the treatment of NASH.	Frank Tacke, Tobias Puengel, Rohit Loomba, Scott L Friedman	Journal Of Hepatology	2023-04-13	Abstract
Role of the Microbiome in Gut-Heart-Kidney Cross Talk.	Griet Glorieux, Sanjay K Nigam, Raymond Vanholder, Francis Verbeke	Circulation Research	2023-04-13	Abstract
Chromosomal fragile site breakage by EBV-encoded EBNA1 at clustered repeats.	Julia Su Zhou Li, Ammal Abbasi, Dong Hyun Kim, Scott M Lippman, Ludmil B Alexandrov, Don W Cleveland	Nature	2023-04-12	Abstract
DNA architectural protein CTCF facilitates subset-specific chromatin interactions to limit the formation of memory CD8 T cells.	Sara Quon, Bingfei Yu, Brendan E Russ, Kirill Tsyganov, Hongtuyet Nguyen, Clara Toma, Maximilian Heeg, James D Hocker, J Justin Milner, Shane Crotty, Matthew E Pipkin, Stephen J Turner, Ananda W Goldrath	Immunity	2023-04-10	Abstract
Part 2 Preface: Immune Checkpoint Inhibitors and Adverse Autoimmune Manifestations.	Vipin Kumar, Benjamin Bonavida	Critical Reviews In Immunology	2023-04-10	Abstract
Preface Part 1: Immune Checkpoint Inhibitors and Autoimmunity.	Vipin Kumar, Benjamin Bonavida	Critical Reviews In Immunology	2023-04-07	Abstract
Review of Major Social Determinants of Health in Schizophrenia-Spectrum Psychotic Disorders: III. Biology.	Dilip V Jeste, Dolores Malaspina, Kara Bagot, Deanna M Barch, Steve Cole, Faith Dickerson, Amanda Dilmore, Charles L Ford, Nicole R Karcher, Joan Luby, Tarek Rajji, Adrián A Pinto-Tomas, Larry J Young	Schizophrenia Bulletin	2023-04-06	Abstract
Effects of a ketogenic and low-fat diet on the human metabolome, microbiome, and foodome in adults at risk for Alzheimer's disease.	Amanda Hazel Dilmore, Cameron Martino, Bryan J Neth, Kiana A West, Jasmine Zemlin, Gibraan Rahman, Morgan Panitchpakdi, Michael J Meehan, Kelly C Weldon, Colette Blach, Leyla Schimmel, Rima Kaddurah-Daouk, Pieter C Dorrestein, Rob Knight, Suzanne Craft,	Alzheimer's & Dementia : The Journal Of The Alzheimer's Association	2023-04-05	Abstract
The Escherichia coli Fur pan-regulon has few conserved but many unique regulatory targets.	Ye Gao, Ina Bang, Yara Seif, Donghyuk Kim, Bernhard O Palsson	Nucleic Acids Research	2023-04-05	Abstract
Evolving approaches to profiling the microbiome in skin disease.	Yang Chen, Rob Knight, Richard L Gallo	Frontiers In Immunology	2023-04-04	Abstract
Whole-genome sequences from wild-type and laboratory-evolved strains define the alleleome and establish its hallmarks.	Edward Alexander Catoiu, Patrick Phaneuf, Jonathan Monk, Bernhard O Palsson	Proceedings Of The National Academy Of Sciences Of The United States Of America	2023-04-03	Abstract
Safety and Efficacy of Combined Tixagevimab and Cilgavimab Administered Intramuscularly or Intravenously in Nonhospitalized Patients With COVID-19: 2 Randomized Clinical Trials.	Rachel A Bender Ignacio, Kara W Chew, Carlee Moser, Judith S Currier, Joseph J Eron, Arzhang Cyrus Javan, Mark J Giganti, Evgenia Aga, Michael Gibbs, Hervé Tchouakam Kouekam, Eva Johnsson, Mark T Esser, Keila Hoover, Gene Neytman, Matthew Newell, Eric S Daar, William Fischer, Courtney V Fletcher, Jonathan Z Li, Alexander L Greninger, Robert W Coombs, Michael D Hughes, Davey Smith, David Alain Wohl,	JAMA Network Open	2023-04-03	Abstract
A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century.	Erhard Bremer, Alexandra Calteau, Antoine Danchin, Colin Harwood, John D Helmann, Claudine Médigue, Bernhard O Palsson, Agnieszka Sekowska, David Vallenet, Abril Zuniga, Cristal Zuniga	Microbial Biotechnology	2023-04-01	Abstract
Transmissible SARS-CoV-2 variants with resistance to clinical protease inhibitors.	Seyed Arad Moghadasi, Emmanuel Heilmann, Ahmed Magdy Khalil, Christina Nnabuife, Fiona L Kearns, Chengjin Ye, Sofia N Moraes, Francesco Costacurta, Morgan A Esler, Hideki Aihara, Dorothee von Laer, Luis Martinez-Sobrido, Timothy Palzkill, Rommie E Amaro, Reuben S Harris	Science Advances	2023-03-29	Abstract
Survival Trends in Sorafenib for Advanced Hepatocellular Carcinoma: A Reconstructed Individual Patient Data Meta-Analysis of Randomized Trials.	Darren Jun Hao Tan, Ansel Shao Pin Tang, Wen Hui Lim, Cheng Han Ng, Benjamin Nah, Clarissa Fu, Jieling Xiao, Benjamin Koh, Phoebe Wen Lin Tay, Eunice X Tan, Margaret Teng, Nicholas Syn, Mark D Muthiah, Nobuharu Tamaki, Sung Won Lee, Beom Kyung Kim, Thomas Yau, Arndt Vogel, Rohit Loomba, Daniel Q Huang	Liver Cancer	2023-03-28	Abstract
Global epidemiology of cirrhosis - aetiology, trends and predictions.	Daniel Q Huang, Norah A Terrault, Frank Tacke, Lise Lotte Gluud, Marco Arrese, Elisabetta Bugianesi, Rohit Loomba	Nature Reviews. Gastroenterology & Hepatology	2023-03-28	Abstract
The transcription factor Mef2d regulates B:T synapse-dependent GC-T differentiation and IL-21-mediated humoral immunity.	Ye-Ji Kim, Jeein Oh, Soohan Jung, Chan Johng Kim, Jinyong Choi, Yoon Kyung Jeon, Hyun Jik Kim, Ji-Won Kim, Chang-Hee Suh, Yoontae Lee, Sin-Hyeog Im, Shane Crotty, Youn Soo Choi	Science Immunology	2023-03-24	Abstract
Reconstructing the landscape of gut microbial species across 29,000 diverse individuals.	Igor Segota, Jeramie D Watrous, Edward D Kantz, Shriram Nallamshetty, Saumya Tiwari, Susan Cheng, Mohit Jain, Tao Long	Nucleic Acids Research	2023-03-24	Abstract
Mitigating the risk of antimalarial resistance via covalent dual-subunit inhibition of the Plasmodium proteasome.	Ioanna Deni, Barbara H Stokes, Kurt E Ward, Kate J Fairhurst, Charisse Flerida A Pasaje, Tomas Yeo, Shirin Akbar, Heekuk Park, Ryan Muir, Daniella S Bick, Wenhu Zhan, Hao Zhang, Yi Jing Liu, Caroline L Ng, Laura A Kirkman, Jehad Almaliti, Alexandra E Gould, Maëlle Duffey, Anthony J O'Donoghue, Anne-Catrin Uhlemann, Jacquin C Niles, Paula C A da Fonseca, William H Gerwick, Gang Lin, Matthew Bogyo, David A Fidock	Cell Chemical Biology	2023-03-22	Abstract
The Underappreciated Role of Secretory IgA in IBD.	Giorgos Bamias, Konstantina Kitsou, Jesús Rivera-Nieves	Inflammatory Bowel Diseases	2023-03-21	Abstract
Synchronization of the circadian clock to the environment tracked in real time.	Mingxu Fang, Archana G Chavan, Andy LiWang, Susan S Golden	Proceedings Of The National Academy Of Sciences Of The United States Of America	2023-03-20	Abstract
Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria.	Andre Mu, William P Klare, Sarah L Baines, C N Ignatius Pang, Romain Guérillot, Nichaela Harbison-Price, Nadia Keller, Jonathan Wilksch, Nguyen Thi Khanh Nhu, Minh-Duy Phan, Bernhard Keller, Brunda Nijagal, Dedreia Tull, Saravanan Dayalan, Hwa Huat Charlie Chua, Dominik Skoneczny, Jason Koval, Abderrahman Hachani, Anup D Shah, Nitika Neha, Snehal Jadhav, Sally R Partridge, Amanda J Cork, Kate Peters, Olivia Bertolla, Stephan Brouwer, Steven J Hancock, Laura Álvarez-Fraga, David M P De Oliveira, Brian Forde, Ashleigh Dale, Warasinee Mujchariyakul, Calum J Walsh, Ian Monk, Anna Fitzgerald, Mabel Lum, Carolina Correa-Ospina, Piklu Roy Chowdhury, Robert G Parton, James De Voss, James Beckett, Francois Monty, Jessica McKinnon, Xiaomin Song, John R Stephen, Marie Everest, Matt I Bellgard, Matthew Tinning, Michael Leeming, Dianna Hocking, Leila Jebeli, Nancy Wang, Nouri Ben Zakour, Serhat A Yasar, Stefano Vecchiarelli, Tonia Russell, Thiri Zaw, Tyrone Chen, Don Teng, Zena Kassir, Trevor Lithgow, Adam Jenney, Jason N Cole, Victor Nizet, Tania C Sorrell, Anton Y Peleg, David L Paterson, Scott A Beatson, Jemma Wu, Mark P Molloy, Anna E Syme, Robert J A Goode, Adam A Hunter, Grahame Bowland, Nicholas P West, Marc R Wilkins, Steven P Djordjevic, Mark R Davies, Torsten Seemann, Benjamin P Howden, Dana Pascovici, Sonika Tyagi, Ralf B Schittenhelm, David P De Souza, Malcolm J McConville, Jonathan R Iredell, Stuart J Cordwell, Richard A Strugnell, Timothy P Stinear, Mark A Schembri, Mark J Walker	Nature Communications	2023-03-18	Abstract
The Evolution of Assessing Central Nervous System Complications in Human Immunodeficiency Virus: Where Do We Go From Here?	Roger C McIntosh, Uraina S Clark, Mariana Cherner, Lucette A Cysique, Robert K Heaton, Jules Levin, Robert H Remien, April Thames, David J Moore, Leah H Rubin	The Journal Of Infectious Diseases	2023-03-17	Abstract
Optimization of nutrient utilization efficiency and productivity for algal cultures under light and dark cycles using genome-scale model process control.	Chien-Ting Li, Richard Eng, Cristal Zuniga, Kai-Wen Huang, Yiqun Chen, Karsten Zengler, Michael J Betenbaugh	NPJ Systems Biology And Applications	2023-03-15	Abstract
Characterization of SARS-CoV-2 Distribution and Microbial Succession in a Clinical Microbiology Testing Facility during the SARS-CoV-2 Pandemic.	Govind Prasad Sah, Grace Kovalick, Jessica Chopyk, Peiting Kuo, Lina Huang, Pooja Ghatbale, Promi Das, Susan Realegeno, Rob Knight, Jack A Gilbert, David T Pride	Microbiology Spectrum	2023-03-14	Abstract
Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut.	Matthew H Foley, Morgan E Walker, Allison K Stewart, Sarah O'Flaherty, Emily C Gentry, Shakshi Patel, Violet V Beaty, Garrison Allen, Meichen Pan, Joshua B Simpson, Caroline Perkins, Molly E Vanhoy, Michael K Dougherty, Sarah K McGill, Ajay S Gulati, Pieter C Dorrestein, Erin S Baker, Matthew R Redinbo, Rodolphe Barrangou, Casey M Theriot	Nature Microbiology	2023-03-13	Abstract
Effectiveness of BNT162b2 and CoronaVac vaccines against omicron in children aged 5 to 11 years.	Eduardo A Oliveira, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Ludmila R Silva, Daniella B Martelli, Clara C Pinhati, Hercílio Martelli-Júnior	World Journal Of Pediatrics : WJP	2023-03-13	Abstract
Shared genetic architecture between attention-deficit/hyperactivity disorder and lifespan.	Laura Vilar-Ribó, Judit Cabana-Domínguez, Lourdes Martorell, Josep Antoni Ramos-Quiroga, Sandra Sanchez-Roige, Abraham A Palmer, Elisabet Vilella, Marta Ribasés, Gerard Muntané, María Soler Artigas	Neuropsychopharmacology : Official Publication Of The American College Of Neuropsychopharmacology	2023-03-11	Abstract
Association of the gut microbiome with kidney function and damage in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL).	Brandilyn A Peters, Qibin Qi, Mykhaylo Usyk, Martha L Daviglus, Jianwen Cai, Nora Franceschini, James P Lash, Marc D Gellman, Bing Yu, Eric Boerwinkle, Rob Knight, Robert D Burk, Robert C Kaplan	Gut Microbes	2023-03-08	Abstract
Captive and urban environments are associated with distinct gut microbiota in deer mice ().	Jessica Diaz, Kent H Redford, Aspen T Reese	Biology Letters	2023-03-08	Abstract
Engineered bacteria producing aryl-hydrocarbon receptor agonists protect against ethanol-induced liver disease in mice.	Tetsuya Kouno, Suling Zeng, Yanhan Wang, Yi Duan, Sonja Lang, Bei Gao, Phillipp Hartmann, Noemí Cabré, Cristina Llorente, Chloé Galbert, Patrick Emond, Harry Sokol, Michael James, Chun Cheih Chao, Jian-Rong Gao, Mylene Perreault, David L Hava, Bernd Schnabl	Alcoholism, Clinical And Experimental Research	2023-03-05	Abstract
Plasma metabolites with mechanistic and clinical links to the neurovascular disease cavernous angioma.	Abhinav Srinath, Bingqing Xie, Ying Li, Je Yeong Sone, Sharbel Romanos, Chang Chen, Anukriti Sharma, Sean Polster, Pieter C Dorrestein, Kelly C Weldon, Dorothy DeBiasse, Thomas Moore, Rhonda Lightle, Janne Koskimäki, Dongdong Zhang, Agnieszka Stadnik, Kristina Piedad, Matthew Hagan, Abdallah Shkoukani, Julián Carrión-Penagos, Dehua Bi, Le Shen, Robert Shenkar, Yuan Ji, Ashley Sidebottom, Eric Pamer, Jack A Gilbert, Mark L Kahn, Mark D'Souza, Dinanath Sulakhe, Issam A Awad, Romuald Girard	Communications Medicine	2023-03-03	Abstract
The Combined Effects of Cannabis, Methamphetamine, and HIV on Neurocognition.	Jeffrey M Rogers, Jennifer E Iudicello, Maria Cecilia G Marcondes, Erin E Morgan, Mariana Cherner, Ronald J Ellis, Scott L Letendre, Robert K Heaton, Igor Grant	Viruses	2023-03-03	Abstract
Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol.	Matthew A Pendergraft, Pedro Belda-Ferre, Daniel Petras, Clare K Morris, Brock A Mitts, Allegra T Aron, MacKenzie Bryant, Tara Schwartz, Gail Ackermann, Greg Humphrey, Ethan Kaandorp, Pieter C Dorrestein, Rob Knight, Kimberly A Prather	Environmental Science & Technology	2023-03-02	Abstract
Cell specialization in cyanobacterial biofilm development revealed by expression of a cell-surface and extracellular matrix protein.	Alona Frenkel, Eli Zecharia, Daniel Gómez-Pérez, Eleonora Sendersky, Yevgeni Yegorov, Avi Jacob, Jennifer I C Benichou, York-Dieter Stierhof, Rami Parnasa, Susan S Golden, Eric Kemen, Rakefet Schwarz	NPJ Biofilms And Microbiomes	2023-03-02	Abstract
Piezophilic Phenotype Is Growth Condition Dependent and Correlated with the Regulation of Two Sets of ATPase in Deep-Sea Piezophilic Bacterium SS9.	An-Qi Li, Wei-Jia Zhang, Xue-Gong Li, Xu-Chong Bao, Xiao-Qing Qi, Long-Fei Wu, Douglas H Bartlett	Microorganisms	2023-03-02	Abstract
Identification of CD8+ T cell - immune cell communications in ileal Crohn's disease.	Han G Duong, Eunice J Choi, Paul Hsu, Natalie R Chiang, Shefali A Patel, Jocelyn G Olvera, Yi Chia Liu, Yun Hsuan Lin, Priscilla Yao, William H Wong, Cynthia S Indralingam, Matthew S Tsai, Brigid S Boland, Wei Wang, John T Chang	Clinical And Translational Gastroenterology	2023-03-01	Abstract
Complete Genome Sequence of an Escherichia coli Strain Isolated from Laboratory Mouse Stool for Use as a Chassis for Transgene Delivery to the Murine Microbiome.	Nicole Siguenza, Baylee J Russell, R Alexander Richter, Amir Zarrinpar	Microbiology Resource Announcements	2023-03-01	Abstract
Marinobazzanan, a Bazzanane-Type Sesquiterpenoid, Suppresses the Cell Motility and Tumorigenesis in Cancer Cells.	Sultan Pulat, Prima F Hillman, Sojeong Kim, Ratnakar N Asolkar, Haerin Kim, Rui Zhou, İsa Taş, Chathurika D B Gamage, Mücahit Varlı, So-Yeon Park, Sung Chul Park, Inho Yang, Jongheon Shin, Dong-Chan Oh, Hangun Kim, Sang-Jip Nam, William Fenical	Marine Drugs	2023-02-25	Abstract
The Gut Microbial Bile Acid Modulation and its Relevance to Digestive Health and Diseases.	Kelly A Fogelson, Pieter C Dorrestein, Amir Zarrinpar, Rob Knight	Gastroenterology	2023-02-23	Abstract
Immunoglobulin Y antibodies against cytolysin reduce ethanol-induced liver disease in mice.	Noemí Cabré, Phillipp Hartmann, Cristina Llorente, Tetsuya Kouno, Yanhan Wang, Suling Zeng, Hyun Young Kim, Xinlian Zhang, Tatiana Kisseleva, Subramanian Iyer, Sirisha Kudumala, Bernd Schnabl	Hepatology (Baltimore, Md.)	2023-02-23	Abstract
Diet Quality and the Fecal Microbiota in Adults in the American Gut Project.	Alexis D Baldeon, Daniel McDonald, Antonio Gonzalez, Rob Knight, Hannah D Holscher	The Journal Of Nutrition	2023-02-22	Abstract
Oral mucosal breaks trigger anti-citrullinated bacterial and human protein antibody responses in rheumatoid arthritis.	R Camille Brewer, Tobias V Lanz, Caryn R Hale, Gregory D Sepich-Poore, Cameron Martino, Austin D Swafford, Thomas S Carroll, Sarah Kongpachith, Lisa K Blum, Serra E Elliott, Nathalie E Blachere, Salina Parveen, John Fak, Vicky Yao, Olga Troyanskaya, Mayu O Frank, Michelle S Bloom, Shaghayegh Jahanbani, Alejandro M Gomez, Radhika Iyer, Nitya S Ramadoss, Orr Sharpe, Sangeetha Chandrasekaran, Lindsay B Kelmenson, Qian Wang, Heidi Wong, Holly L Torres, Mark Wiesen, Dana T Graves, Kevin D Deane, V Michael Holers, Rob Knight, Robert B Darnell, William H Robinson, Dana E Orange	Science Translational Medicine	2023-02-22	Abstract
Determination of the Chromatin Openness in Bacterial Genomes.	Mahmoud M Al-Bassam, Karsten Zengler	Methods In Molecular Biology (Clifton, N.J.)	2023-02-22	Abstract
Terpene biosynthesis in marine sponge animals.	Kayla Wilson, Tristan de Rond, Immo Burkhardt, Taylor S Steele, Rebecca J B Schäfer, Sheila Podell, Eric E Allen, Bradley S Moore	Proceedings Of The National Academy Of Sciences Of The United States Of America	2023-02-21	Abstract
Selective IL-27 production by intestinal regulatory T cells permits gut-specific regulation of Th17 immunity.	Chia-Hao Lin, Cheng-Jang Wu, Sunglim Cho, Rasika Patkar, Ling-Li Lin, Mei-Chi Chen, Elisabeth Israelsson, Joanne Betts, Magdalena Niedzielska, Shefali A Patel, Han G Duong, Romana R Gerner, Chia-Yun Hsu, Matthew Catley, Rose A Maciewicz, Hiutung Chu, Manuela Raffatellu, John T Chang, Li-Fan Lu	BioRxiv : The Preprint Server For Biology	2023-02-21	Abstract
Symptom and Viral Rebound in Untreated SARS-CoV-2 Infection.	Rinki Deo, Manish C Choudhary, Carlee Moser, Justin Ritz, Eric S Daar, David A Wohl, Alexander L Greninger, Joseph J Eron, Judith S Currier, Michael D Hughes, Davey M Smith, Kara W Chew, Jonathan Z Li,	Annals Of Internal Medicine	2023-02-21	Abstract
Differences in Bacterial Translocation and Liver Injury in Ethanol Versus Diet-Induced Liver Disease.	Cynthia L Hsu, Yanhan Wang, Yi Duan, Huikuan Chu, Phillipp Hartmann, Cristina Llorente, Rongrong Zhou, Bernd Schnabl	Digestive Diseases And Sciences	2023-02-20	Abstract
Microbiome response in an urban river system is dominated by seasonality over wastewater treatment upgrades.	Sho M Kodera, Anukriti Sharma, Cameron Martino, Melissa Dsouza, Mark Grippo, Holly L Lutz, Rob Knight, Jack A Gilbert, Cristina Negri, Sarah M Allard	Environmental Microbiome	2023-02-19	Abstract
Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause deadly disease.	Panpan Zhou, Ge Song, Hejun Liu, Meng Yuan, Wan-Ting He, Nathan Beutler, Xueyong Zhu, Longping V Tse, David R Martinez, Alexandra Schäfer, Fabio Anzanello, Peter Yong, Linghang Peng, Katharina Dueker, Rami Musharrafieh, Sean Callaghan, Tazio Capozzola, Oliver Limbo, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, David Nemazee, Joseph G Jardine, Yana Safonova, Bryan Briney, Thomas F Rogers, Ian A Wilson, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees Andrabi	Immunity	2023-02-16	Abstract
Using machine learning to improve our understanding of COVID-19 infection in children.	Shraddha Piparia, Andrew Defante, Kelan Tantisira, Julie Ryu	PloS One	2023-02-15	Abstract
APOBEC3A Catalytic Inactivity Mutation Induces Tertiary Structure Destabilization.	Katherine F M Jones, Mohamed Shehata, Michael A Carpenter, Rommie E Amaro, Daniel A Harki	ACS Medicinal Chemistry Letters	2023-02-14	Abstract
Metagenome-Assembled Genomes from Murine Fecal Microbiomes Dominated by Uncharacterized Bacteria.	Kiarash Rastegar, Scott T Kelley, Varykina G Thackray	Microbiology Resource Announcements	2023-02-13	Abstract
Nafcillin Augmentation of Daptomycin and Cathelicidin LL-37 Killing of Methicillin-resistant Staphylococcus epidermidis: Foundations of Successful Therapy of Endocarditis.	Lucy Catteau, Yvan Diaz Iglesias, Hannah Tsunemoto, Joseph Pogliano, Françoise Van Bambeke, Victor Nizet, George Sakoulas	International Journal Of Antimicrobial Agents	2023-02-10	Abstract
Diverse Microbial Hot Spring Mat Communities at Black Canyon of the Colorado River.	Ivan J Moreno, Bianca Brahamsha, Mohamed S Donia, Brian Palenik	Microbial Ecology	2023-02-09	Abstract
Man vs Microbes - The Race of the Century.	Ericka Anderson, Bipin Nair, Victor Nizet, Geetha Kumar	Journal Of Medical Microbiology	2023-02-07	Abstract
Malice in Chains.	Joshua Osowicki, Victor Nizet	The Journal Of Infectious Diseases	2023-02-07	Abstract
T Cell Responses to SARS-CoV-2.	Alessandro Sette, John Sidney, Shane Crotty	Annual Review Of Immunology	2023-02-07	Abstract
Laboratory evolution reveals general and specific tolerance mechanisms for commodity chemicals.	Rebecca M Lennen, Hyun Gyu Lim, Kristian Jensen, Elsayed T Mohammed, Patrick V Phaneuf, Myung Hyun Noh, Sailesh Malla, Rosa A Börner, Ksenia Chekina, Emre Özdemir, Ida Bonde, Anna Koza, Jérôme Maury, Lasse E Pedersen, Lars Y Schöning, Nikolaus Sonnenschein, Bernhard O Palsson, Alex T Nielsen, Morten O A Sommer, Markus J Herrgård, Adam M Feist	Metabolic Engineering	2023-02-03	Abstract
The Molecular Effect of Wearing Silver-Threaded Clothing on the Human Skin.	Alexey V Melnik, Chris Callewaert, Kathleen Dorrestein, Rosie Broadhead, Jeremiah J Minich, Madeleine Ernst, Greg Humphrey, Gail Ackermann, Rob Gathercole, Alexander A Aksenov, Rob Knight, Pieter C Dorrestein	MSystems	2023-02-01	Abstract
Acute and Postacute COVID-19 Outcomes Among Immunologically Naive Adults During Delta vs Omicron Waves.	Margaret K Doll, Alpana Waghmare, Antje Heit, Brianna Levenson Shakoor, Louise E Kimball, Nina Ozbek, Rachel L Blazevic, Larry Mose, Jim Boonyaratanakornkit, Terry L Stevens-Ayers, Kevin Cornell, Benjamin D Sheppard, Emma Hampson, Faria Sharmin, Benjamin Goodwin, Jennifer M Dan, Tom Archie, Terry O'Connor, David Heckerman, Frank Schmitz, Michael Boeckh, Shane Crotty	JAMA Network Open	2023-02-01	Abstract
A Camptothetin Analog, Topotecan, Promotes HIV Latency via Interference with HIV Transcription and RNA Splicing.	Amey Mukim, Davey M Smith, Savitha Deshmukh, Andrew A Qazi, Nadejda Beliakova-Bethell	Journal Of Virology	2023-01-31	Abstract
Qualitative interviews to evaluate content validity of the ACTIV-2 COVID-19 Symptom Diary (ACSD).	Louis S Matza, Katie D Stewart, April N Naegeli, Kayla M Mills, Karin S Coyne, Kara W Chew, Michael D Hughes, Davey M Smith	Journal Of Patient-reported Outcomes	2023-01-31	Abstract
Early transcriptional and epigenetic divergence of CD8+ T cells responding to acute versus chronic infection.	Lauren K Quezada, Wenhao Jin, Yi Chia Liu, Eleanor S Kim, Zhaoren He, Cynthia S Indralingam, Tiffani Tysl, Lara Labarta-Bajo, Ellen J Wehrens, Yeara Jo, Katelynn R Kazane, Christopher Hattori, Elina I Zuniga, Gene W Yeo, John T Chang	PLoS Biology	2023-01-30	Abstract
Author Correction: Long-primed germinal centres with enduring affinity maturation and clonal migration.	Jeong Hyun Lee, Henry J Sutton, Christopher A Cottrell, Ivy Phung, Gabriel Ozorowski, Leigh M Sewall, Rebecca Nedellec, Catherine Nakao, Murillo Silva, Sara T Richey, Jonathan L Torres, Wen-Hsin Lee, Erik Georgeson, Michael Kubitz, Sam Hodges, Tina-Marie Mullen, Yumiko Adachi, Kimberly M Cirelli, Amitinder Kaur, Carolina Allers, Marissa Fahlberg, Brooke F Grasperge, Jason P Dufour, Faith Schiro, Pyone P Aye, Oleksandr Kalyuzhniy, Alessia Liguori, Diane G Carnathan, Guido Silvestri, Xiaoying Shen, David C Montefiori, Ronald S Veazey, Andrew B Ward, Lars Hangartner, Dennis R Burton, Darrell J Irvine, William R Schief, Shane Crotty	Nature	2023-01-30	Abstract
Enhancer-instructed epigenetic landscape and chromatin compartmentalization dictate a primary antibody repertoire protective against specific bacterial pathogens.	E Mauricio Barajas-Mora, Lindsay Lee, Hanbin Lu, J Andrés Valderrama, Elisabet Bjanes, Victor Nizet, Ann J Feeney, Ming Hu, Cornelis Murre	Nature Immunology	2023-01-30	Abstract
Malassezia restricta promotes alcohol-induced liver injury.	Suling Zeng, Phillipp Hartmann, Minji Park, Yi Duan, Sonja Lang, Cristina Llorente, Yanhan Wang, Noemí Cabré, Derrick E Fouts, Petra Bacher, Won Hee Jung, Peter Stärkel, Bernd Schnabl	Hepatology Communications	2023-01-27	Abstract
Insulin-regulated serine and lipid metabolism drive peripheral neuropathy.	Michal K Handzlik, Jivani M Gengatharan, Katie E Frizzi, Grace H McGregor, Cameron Martino, Gibraan Rahman, Antonio Gonzalez, Ana M Moreno, Courtney R Green, Lucie S Guernsey, Terry Lin, Patrick Tseng, Yoichiro Ideguchi, Regis J Fallon, Amandine Chaix, Satchidananda Panda, Prashant Mali, Martina Wallace, Rob Knight, Marin L Gantner, Nigel A Calcutt, Christian M Metallo	Nature	2023-01-25	Abstract
Deep-learning optimized DEOCSU suite provides an iterable pipeline for accurate ChIP-exo peak calling.	Ina Bang, Sang-Mok Lee, Seojoung Park, Joon Young Park, Linh Khanh Nong, Ye Gao, Bernhard O Palsson, Donghyuk Kim	Briefings In Bioinformatics	2023-01-25	Abstract
One Week of Oral Camostat Versus Placebo in Nonhospitalized Adults With Mild-to-Moderate Coronavirus Disease 2019: A Randomized Controlled Phase 2 Trial.	Nikolaus Jilg, Kara W Chew, Mark J Giganti, Eric S Daar, David A Wohl, Arzhang Cyrus Javan, Amy Kantor, Carlee Moser, Robert W Coombs, Gene Neytman, Keila Hoover, Atasi Jana, Phil A Hart, Alexander L Greninger, Bob Szurgot, Joseph J Eron, Judith S Currier, Michael D Hughes, Davey M Smith, Jonathan Z Li,	Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America	2023-01-25	Abstract
Integrated Multi-Cohort Analysis of the Parkinson's Disease Gut Metagenome.	Joseph C Boktor, Gil Sharon, Leo A Verhagen Metman, Deborah A Hall, Phillip A Engen, Zoe Zreloff, Daniel J Hakim, John W Bostick, James Ousey, Danielle Lange, Gregory Humphrey, Gail Ackermann, Martha Carlin, Rob Knight, Ali Keshavarzian, Sarkis K Mazmanian	Movement Disorders : Official Journal Of The Movement Disorder Society	2023-01-24	Abstract
Hepatic pIgR-mediated secretion of IgA limits bacterial translocation and prevents ethanol-induced liver disease in mice.	Tim Hendrikx, Sonja Lang, Dragana Rajcic, Yanhan Wang, Sara McArdle, Kenneth Kim, Zbigniew Mikulski, Bernd Schnabl	Gut	2023-01-23	Abstract
Comprehensive evaluation of shotgun metagenomics, amplicon sequencing, and harmonization of these platforms for epidemiological studies.	Mykhaylo Usyk, Brandilyn A Peters, Smruthi Karthikeyan, Daniel McDonald, Christopher C Sollecito, Yoshiki Vazquez-Baeza, Justin P Shaffer, Marc D Gellman, Gregory A Talavera, Martha L Daviglus, Bharat Thyagarajan, Rob Knight, Qibin Qi, Robert Kaplan, Robert D Burk	Cell Reports Methods	2023-01-23	Abstract
Safety and Efficacy of Ceftolozane/Tazobactam Versus Meropenem in Neonates and Children With Complicated Urinary Tract Infection, Including Pyelonephritis: A Phase 2, Randomized Clinical Trial.	Emmanuel Roilides, Negar Ashouri, John S Bradley, Matthew G Johnson, Julia Lonchar, Feng-Hsiu Su, Jennifer A Huntington, Myra W Popejoy, Mekki Bensaci, Carisa De Anda, Elizabeth G Rhee, Christopher J Bruno	The Pediatric Infectious Disease Journal	2023-01-23	Abstract
Predictors of COVID-19 vaccine uptake among people who inject drugs.	Steffanie A Strathdee, Daniela Abramovitz, Carlos F Vera, Irina Artamonova, Thomas L Patterson, Davey M Smith, Antoine Chaillon, Angela R Bazzi	Vaccine	2023-01-23	Abstract
A tissue atlas of ulcerative colitis revealing evidence of sex-dependent differences in disease-driving inflammatory cell types and resistance to TNF inhibitor therapy.	Aaron T Mayer, Derek R Holman, Anav Sood, Utkarsh Tandon, Salil S Bhate, Sunil Bodapati, Graham L Barlow, Jeff Chang, Sarah Black, Erica C Crenshaw, Alexander N Koron, Sarah E Streett, Sanjiv S Gambhir, William J Sandborn, Brigid S Boland, Trevor Hastie, Robert Tibshirani, John T Chang, Garry P Nolan, Christian M Schürch, Stephan Rogalla	Science Advances	2023-01-20	Abstract
Model-driven experimental design workflow expands understanding of regulatory role of Nac in .	Joon Young Park, Sang-Mok Lee, Ali Ebrahim, Zoe K Scott-Nevros, Jaehyung Kim, Laurence Yang, Anand Sastry, Sang Woo Seo, Bernhard O Palsson, Donghyuk Kim	NAR Genomics And Bioinformatics	2023-01-20	Abstract
Detection of Bacteria in Bladder Mucosa of Adult Females.	Alan J Wolfe, David J Rademacher, Carine R Mores, Robert J Evans, Tyler Overholt, Thomas Halverson, Roberto Limeira, Catherine Matthews, Gopal Badlani, Linda Brubaker, Stephen J Walker	The Journal Of Urology	2023-01-19	Abstract
Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research.	Jack A Gilbert, Irene L G Newton, Gemma Reguera	MSystems	2023-01-19	Abstract
Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research.	Jack A Gilbert, Irene L G Newton, Gemma Reguera	Applied And Environmental Microbiology	2023-01-19	Abstract
Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research.	Jack A Gilbert, Irene L G Newton, Gemma Reguera	Microbiology Resource Announcements	2023-01-19	Abstract
Association of subjective and objective measures of sleep with gut microbiota composition and diversity in older men: The Osteoporotic Fractures in Men (MrOS) study.	Mehrbod Estaki, Lisa Langsetmo, Michelle Shardell, Anna Mischel, Lingjing Jiang, Yuan Zhong, Christopher Kaufmann, Rob Knight, Katie Stone, Deborah Kado	The Journals Of Gerontology. Series A, Biological Sciences And Medical Sciences	2023-01-19	Abstract
Ablation of Adar1 in myeloid cells imprints a global antiviral state in the lung and heightens early immunity against SARS-CoV-2.	Julia Z Adamska, Rohit Verma, Shakti Gupta, Thomas Hagan, Florian Wimmers, Katharine Floyd, Qin Li, Erika V Valore, Yanli Wang, Meera Trisal, José G Vilches-Moure, Shankar Subramaniam, Carl R Walkley, Mehul S Suthar, Jin Billy Li, Bali Pulendran	Cell Reports	2023-01-17	Abstract
Cataloging natural sialic acids and other nonulosonic acids (NulOs), and their representation using the Symbol Nomenclature for Glycans.	Amanda L Lewis, Philip Toukach, Evan Bolton, Xi Chen, Martin Frank, Thomas Lütteke, Yuriy Knirel, Ian Schoenhofen, Ajit Varki, Evgeny Vinogradov, Robert J Woods, Natasha Zachara, Jian Zhang, Johannis P Kamerling, Sriram Neelamegham,	Glycobiology	2023-01-15	Abstract
Stability of the fecal and oral microbiome over two years at -80°C for multiple collection methods.	Semi Zouiouich, Doratha A Byrd, Xing Hua, Smriti Karwa, Yunhu Wan, Jianxin Shi, Gregory C Humphrey, Gail L Ackermann, Rob Knight, Christian C Abnet, Emily Vogtmann, Rashmi Sinha	Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology	2023-01-13	Abstract
Any alcohol use in NAFLD patients is associated with significant changes to the intestinal virome.	Cynthia L Hsu, Sonja Lang, Münevver Demir, Derrick E Fouts, Peter Stärkel, Bernd Schnabl	Hepatology (Baltimore, Md.)	2023-01-13	Abstract
Genomic and Spectroscopic Signature-Based Discovery of Natural Macrolactams.	Yern-Hyerk Shin, Ji Hyeon Im, Ilnam Kang, Eunji Kim, Sung Chul Jang, Eunji Cho, Daniel Shin, Sunghoon Hwang, Young Eun Du, Thanh-Hau Huynh, Keebeom Ko, Yoon-Joo Ko, Sang-Jip Nam, Takayoshi Awakawa, Jeeyeon Lee, Suckchang Hong, Ikuro Abe, Bradley S Moore, William Fenical, Yeo Joon Yoon, Jang-Cheon Cho, Sang Kook Lee, Ki-Bong Oh, Dong-Chan Oh	Journal Of The American Chemical Society	2023-01-12	Abstract
Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an Model for Cheese Communities.	Christina C Saak, Emily C Pierce, Cong B Dinh, Daniel Portik, Richard Hall, Meredith Ashby, Rachel J Dutton	MSystems	2023-01-09	Abstract
Comprehensive whole genome sequencing with hybrid assembly of multi-drug resistant isolate causing cerebral abscess.	Monika Kumaraswamy, Alison Coady, Richard Szubin, Thomas Cs Martin, Bernhard Palsson, Victor Nizet, Jonathan M Monk	Current Research In Microbial Sciences	2023-01-09	Abstract
Interactions between perceived stress and microbial-host immune components: two demographically and geographically distinct pregnancy cohorts.	Beatriz Peñalver Bernabé, Pauline M Maki, Janet L Cunningham, Tory Eisenlohr-Moul, Lisa Tussing-Humphreys, Ian M Carroll, Samantha Meltzer-Brody, Jack A Gilbert, Mary Kimmel	Translational Psychiatry	2023-01-06	Abstract
Stability, robustness, and containment: preparing synthetic biology for real-world deployment.	Shalni Kumar, Jeff Hasty	Current Opinion In Biotechnology	2023-01-06	Abstract
Residential green environments are associated with human milk oligosaccharide diversity and composition.	Mirkka Lahdenperä, Laura Galante, Carlos Gonzales-Inca, Jussi Vahtera, Jaana Pentti, Samuli Rautava, Niina Käyhkö, Chloe Yonemitsu, Julia Gupta, Lars Bode, Hanna Lagström	Scientific Reports	2023-01-05	Abstract
Wastewater surveillance for public health.	Joshua I Levy, Kristian G Andersen, Rob Knight, Smruthi Karthikeyan	Science (New York, N.Y.)	2023-01-05	Abstract
Natural killer cells for antiviral therapy.	Davey M Smith, Jolie R Schafer, Brian Tullius, Laura Witkam, Silke Paust	Science Translational Medicine	2023-01-04	Abstract
Can a mucosal microbiota signature predict disease severity, survival, and disease recurrence in PSC?	Phillipp Hartmann, Bernd Schnabl	Hepatology (Baltimore, Md.)	2023-01-03	Abstract
Mutualism-enhancing mutations dominate early adaptation in a two-species microbial community.	Sandeep Venkataram, Huan-Yu Kuo, Erik F Y Hom, Sergey Kryazhimskiy	Nature Ecology & Evolution	2023-01-02	Abstract
Cocirculation and replacement of SARS-CoV-2 variants in crowded settings and marginalized populations along the US-Mexico border.	Antoine Chaillon, Ietza Bojorquez, Jaime Sepúlveda, Alicia Yolanda Harvey-Vera, M Gudelia Rangel, Britt Skaathun, Sanjay R Mehta, Caroline Ignacio, Magali Porrachia, Davey M Smith, Steffanie A Strathdee	Salud Publica De Mexico	2023-01-02	Abstract
Higher-order interactions shape microbial interactions as microbial community complexity increases.	Manon A Morin, Anneliese J Morrison, Michael J Harms, Rachel J Dutton	Scientific Reports	2022-12-31	Abstract
Antiviral therapy use and related outcomes in patients with cancer and viral infections: results from SWOG S1204.	Jessica P Hwang, Kathryn B Arnold, Joseph M Unger, Rashmi Chugh, Monica A Tincopa, Rohit Loomba, Dawn Hershman, Scott D Ramsey	Supportive Care In Cancer : Official Journal Of The Multinational Association Of Supportive Care In Cancer	2022-12-31	Abstract
Mitigating Infectious morbidity and Growth deficits in HIV-exposed uninfected infanTs with human Milk Oligosaccharide (MIGH-T MO): a randomised trial protocol.	Rupak Shivakoti, Amy L Slogrove, Barbara Laughton, Mehr Shafiq, Elisma Schoeman, Richard H Glashoff, Cheng-Shiun Leu, Shuang Wang, Lars Bode, Grace Aldrovandi, Louise Kuhn	BMJ Open	2022-12-30	Abstract
High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917.	Max van 't Hof, Omkar S Mohite, Jonathan M Monk, Tilmann Weber, Bernhard O Palsson, Morten O A Sommer	BMC Bioinformatics	2022-12-30	Abstract
Breastfeeding enrichment of B. longum subsp. infantis mitigates the effect of antibiotics on the microbiota and childhood asthma risk.	Darlene L Y Dai, Charisse Petersen, Courtney Hoskinson, Kate L Del Bel, Allan B Becker, Theo J Moraes, Piushkumar J Mandhane, B Brett Finlay, Elinor Simons, Anita L Kozyrskyj, David M Patrick, Padmaja Subbarao, Lars Bode, Meghan B Azad, Stuart E Turvey	Med (New York, N.Y.)	2022-12-29	Abstract
The gut microbiome is a significant risk factor for future chronic lung disease.	Yang Liu, Shu Mei Teo, Guillaume Meric, Howard H F Tang, Qiyun Zhu, Jon G Sanders, Yoshiki Vazquez-Baeza, Karin Verspoor, Ville A Vartiainen, Pekka Jousilahti, Leo Lahti, Teemu Niiranen, Aki S Havulinna, Rob Knight, Veikko Salomaa, Michael Inouye	The Journal Of Allergy And Clinical Immunology	2022-12-29	Abstract
SREBP signaling is essential for effective B cell responses.	Wei Luo, Julia Z Adamska, Chunfeng Li, Rohit Verma, Qing Liu, Thomas Hagan, Florian Wimmers, Shakti Gupta, Yupeng Feng, Wenxia Jiang, Jiehao Zhou, Erika Valore, Yanli Wang, Meera Trisal, Shankar Subramaniam, Timothy F Osborne, Bali Pulendran	Nature Immunology	2022-12-28	Abstract
In vitro Activity of Ceftaroline Against an International Collection of Kingella kingae Isolates Recovered From Carriers and Invasive Infections.	Joshua M Maher, Rodrigo E Mendes, Holly K Huynh, Eric A Porsch, Joseph W St Geme Iii, Pablo Yagupsky, John Bradley	The Pediatric Infectious Disease Journal	2022-12-28	Abstract
Safety and microbiological activity of phage therapy in persons with cystic fibrosis colonized with Pseudomonas aeruginosa: study protocol for a phase 1b/2, multicenter, randomized, double-blind, placebo-controlled trial.	Pranita D Tamma, Maria Souli, Michael Billard, Joseph Campbell, Douglas Conrad, Damon W Ellison, Beth Evans, Scott R Evans, Kerryl E Greenwood-Quaintance, Andrey A Filippov, Holly S Geres, Toshimitsu Hamasaki, Lauren Komarow, Mikeljon P Nikolich, Thomas P Lodise, Seema U Nayak, Carmelle Norice-Tra, Robin Patel, David Pride, Janie Russell, Daria Van Tyne, Henry F Chambers, Vance G FowlerJr, Robert T Schooley,	Trials	2022-12-28	Abstract
Quantifying (non)parallelism of gut microbial community change using multivariate vector analysis.	Andreas Härer, Diana J Rennison	Ecology And Evolution	2022-12-28	Abstract
Predicting stress response and improved protein overproduction in Bacillus subtilis.	Juan D Tibocha-Bonilla, Cristal Zuñiga, Asama Lekbua, Colton Lloyd, Kevin Rychel, Katie Short, Karsten Zengler	NPJ Systems Biology And Applications	2022-12-27	Abstract
The RISE FOR HEALTH study: Methods for in-person assessment and biospecimen collection.	Linda Brubaker, Julia Barthold, Colleen M Fitzgerald, Kimberly Kenton, Cora E Lewis, Jerry Lowder, Emily S Lukacz, Alayne Markland, Melanie Meister, Janis Miller, Elizabeth R Mueller, Kyle Rudser, Ariana L Smith, Diane K Newman,	Neurourology And Urodynamics	2022-12-27	Abstract
Minireview: Engineering evolution to reconfigure phenotypic traits in microbes for biotechnological applications.	Kangsan Kim, Minjeong Kang, Sang-Hyeok Cho, Eojin Yoo, Ui-Gi Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho	Computational And Structural Biotechnology Journal	2022-12-24	Abstract
Association between inflammation, reward processing, and ibuprofen-induced increases of miR-23b in astrocyte-enriched extracellular vesicles: A randomized, placebo-controlled, double-blind, exploratory trial in healthy individuals.	Kaiping Burrows, Leandra K Figueroa-Hall, Ahlam M Alarbi, Jennifer L Stewart, Rayus Kuplicki, Chibing Tan, Bethany N Hannafon, Rajagopal Ramesh, Jonathan Savitz, Sahib Khalsa, T Kent Teague, Victoria B Risbrough, Martin P Paulus	Brain, Behavior, & Immunity - Health	2022-12-24	Abstract
SARS-CoV-2 spike conformation determines plasma neutralizing activity elicited by a wide panel of human vaccines.	John E Bowen, Young-Jun Park, Cameron Stewart, Jack T Brown, William K Sharkey, Alexandra C Walls, Anshu Joshi, Kaitlin R Sprouse, Matthew McCallum, M Alejandra Tortorici, Nicholas M Franko, Jennifer K Logue, Ignacio G Mazzitelli, Annalee W Nguyen, Rui P Silva, Yimin Huang, Jun Siong Low, Josipa Jerak, Sasha W Tiles, Kumail Ahmed, Asefa Shariq, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Gyorgy Snell, Christine M Posavad, Najeeha Talat Iqbal, Jorge Geffner, Alessandra Bandera, Andrea Gori, Federica Sallusto, Jennifer A Maynard, Shane Crotty, Wesley C Van Voorhis, Carlos Simmerling, Renata Grifantini, Helen Y Chu, Davide Corti, David Veesler	Science Immunology	2022-12-23	Abstract
Healthy dietary patterns are associated with the gut microbiome in the Hispanic Community Health Study/Study of Latinos.	Brandilyn A Peters, Jiaqian Xing, Guo-Chong Chen, Mykhaylo Usyk, Zheng Wang, Amanda C McClain, Bharat Thyagarajan, Martha L Daviglus, Daniela Sotres-Alvarez, Frank B Hu, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi	The American Journal Of Clinical Nutrition	2022-12-22	Abstract
S. aureus drives itch and scratch-induced skin damage through a V8 protease-PAR1 axis.	Liwen Deng, Flavia Costa, Kimbria J Blake, Samantha Choi, Arundhasa Chandrabalan, Muhammad Saad Yousuf, Stephanie Shiers, Daniel Dubreuil, Daniela Vega-Mendoza, Corinne Rolland, Celine Deraison, Tiphaine Voisin, Michelle D Bagood, Lucia Wesemann, Abigail M Frey, Joseph S Palumbo, Brian J Wainger, Richard L Gallo, Juan-Manuel Leyva-Castillo, Nathalie Vergnolle, Theodore J Price, Rithwik Ramachandran, Alexander R Horswill, Isaac M Chiu	Cell	2022-12-22	Abstract
Outer Membrane Vesicle-Coated Nanoparticle Vaccine Protects Against Pneumonia and Sepsis.	Elisabet Bjanes, Jiarong Zhou, Tariq Qayum, Nishta Krishnan, Raymond H Zurich, Nitasha D Menon, Alexandria Hoffman, Ronnie H Fang, Liangfang Zhang, Victor Nizet	Advanced Nanobiomed Research	2022-12-22	Abstract
Bamlanivimab therapy for acute COVID-19 does not blunt SARS-CoV-2-specific memory T cell responses.	Sydney I Ramirez, Alba Grifoni, Daniela Weiskopf, Urvi M Parikh, Amy Heaps, Farhoud Faraji, Scott F Sieg, Justin Ritz, Carlee Moser, Joseph J Eron, Judith S Currier, Paul Klekotka, Alessandro Sette, David A Wohl, Eric S Daar, Michael D Hughes, Kara W Chew, Davey M Smith, Shane Crotty,	JCI Insight	2022-12-22	Abstract
Fungal infections and the fungal microbiome in hepatobiliary disorders.	Phillipp Hartmann, Bernd Schnabl	Journal Of Hepatology	2022-12-21	Abstract
The Chromatin Regulator Mll1 Supports T Follicular Helper Cell Differentiation by Controlling Expression of Bcl6, LEF-1, and TCF-1.	Simon Bélanger, Sonya Haupt, Caterina E Faliti, Adam Getzler, Jinyong Choi, Huitian Diao, Pabalu P Karunadharma, Nicholas A Bild, Matthew E Pipkin, Shane Crotty	Journal Of Immunology (Baltimore, Md. : 1950)	2022-12-20	Abstract
Conservation of Nematocida microsporidia gene expression and host response in Caenorhabditis nematodes.	Yin Chen Wan, Emily R Troemel, Aaron W Reinke	PloS One	2022-12-19	Abstract
ConCISE: Consensus Annotation Propagation of Ion Features in Untargeted Tandem Mass Spectrometry Combining Molecular Networking and Metabolite Structure Prediction.	Zachary A Quinlan, Irina Koester, Allegra T Aron, Daniel Petras, Lihini I Aluwihare, Pieter C Dorrestein, Craig E Nelson, Linda Wegley Kelly	Metabolites	2022-12-16	Abstract
Peptide Amphiphile Mediated Co-assembly for Nanoplasmonic Sensing.	Zhicheng Jin, Yi Li, Ke Li, Jiajing Zhou, Justin Yeung, Chuxuan Ling, Wonjun Yim, Tengyu He, Yong Cheng, Ming Xu, Matthew N Creyer, Yu-Ci Chang, Pavla Fajtová, Maurice Retout, Baiyan Qi, Shuzhou Li, Anthony J O'Donoghue, Jesse V Jokerst	Angewandte Chemie (International Ed. In English)	2022-12-15	Abstract
Exploring the value of a global gene drive project registry.	Riley I Taitingfong, Cynthia Triplett, Váleri N Vásquez, Ramya M Rajagopalan, Robyn Raban, Aaron Roberts, Gerard Terradas, Bridget Baumgartner, Claudia Emerson, Fred Gould, Fredros Okumu, Cynthia E Schairer, Hervé C Bossin, Leah Buchman, Karl J Campbell, Anna Clark, Jason Delborne, Kevin Esvelt, Joshua Fisher, Robert M Friedman, Gigi Gronvall, Nikos Gurfield, Elizabeth Heitman, Natalie Kofler, Todd Kuiken, Jennifer Kuzma, Pablo Manrique-Saide, John M Marshall, Michael Montague, Amy C Morrison, Chris C Opesen, Ryan Phelan, Antoinette Piaggio, Hector Quemada, Larisa Rudenko, Natéwindé Sawadogo, Robert Smith, Holly Tuten, Anika Ullah, Adam Vorsino, Nikolai Windbichler, Omar S Akbari, Kanya Long, James V Lavery, Sam Weiss Evans, Karen Tountas, Cinnamon S Bloss	Nature Biotechnology	2022-12-15	Abstract
Deep Dive into the Long Haul: Analysis of Symptom Clusters and Risk Factors for Post-Acute Sequelae of COVID-19 to Inform Clinical Care.	Nicole H Goldhaber, Jordan N Kohn, William Scott Ogan, Amy Sitapati, Christopher A Longhurst, Angela Wang, Susan Lee, Suzi Hong, Lucy E Horton	International Journal Of Environmental Research And Public Health	2022-12-15	Abstract
Potentially probiotic Limosilactobacillus reuteri from human milk strengthens the gut barrier in T84 cells and a murine enteroid model.	Jasia Anjum, Andrew Quach, Preedajit Wongkrasant, Shahid Nazir, Muhammad Tariq, Kim E Barrett, Arsalan Zaidi	Journal Of Applied Microbiology	2022-12-14	Abstract
Concurrent validity and reliability of at-home teleneuropsychological evaluations among people with and without HIV.	Maulika Kohli, Arin Fisher, Ni Sun-Suslow, Anne Heaton, Matthew S Dawson, Jennifer Marquie, Donald R Franklin, Maria Marquine, Jennifer E Iudicello, Robert K Heaton, David J Moore	Journal Of The International Neuropsychological Society : JINS	2022-12-13	Abstract
Stool multi-omics for the study of host-microbe interactions in inflammatory bowel disease.	Consuelo Sauceda, Charlie Bayne, Khadijeh Sudqi, Antonio Gonzalez, Parambir S Dulai, Rob Knight, David J Gonzalez, Carlos G Gonzalez	Gut Microbes	2022-12-12	Abstract
Revealing Causes for False-Positive and False-Negative Calling of Gene Essentiality in Escherichia coli Using Transposon Insertion Sequencing.	Donghui Choe, Uigi Kim, Soonkyu Hwang, Sang Woo Seo, Donghyuk Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho	MSystems	2022-12-12	Abstract
Comparison of bacterial suppression by phage cocktails, dual-receptor generalists, and coevolutionarily trained phages.	Joshua M Borin, Justin J Lee, Krista R Gerbino, Justin R Meyer	Evolutionary Applications	2022-12-09	Abstract
Host-microbiome interactions in the holobiome of Atopic Dermatitis.	Elise Burger, Richard Gallo	The Journal Of Allergy And Clinical Immunology	2022-12-09	Abstract
Effects of Variation in Urine Sample Storage Conditions on 16S Urogenital Microbiome Analyses.	Tanya Kumar, MacKenzie Bryant, Kalen Cantrell, Se Jin Song, Daniel McDonald, Helena M Tubb, Sawyer Farmer, Emily S Lukacz, Linda Brubaker, Rob Knight	MSystems	2022-12-08	Abstract
Breathing and Tilting: Mesoscale Simulations Illuminate Influenza Glycoprotein Vulnerabilities.	Lorenzo Casalino, Christian Seitz, Julia Lederhofer, Yaroslav Tsybovsky, Ian A Wilson, Masaru Kanekiyo, Rommie E Amaro	ACS Central Science	2022-12-08	Abstract