Publications

These are the LAST 12 MONTHS of publications from the CMI membership team.

To see or search all of the publications, visit the archives page.

Article	Authors	Journal	Date	Abstract	Reach
A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice.	Reem Abdel-Haq, Johannes C M Schlachetzki, Joseph C Boktor, Thaisa M Cantu-Jungles, Taren Thron, Mengying Zhang, John W Bostick, Tahmineh Khazaei, Sujatha Chilakala, Livia H Morais, Greg Humphrey, Ali Keshavarzian, Jonathan E Katz, Matthew Thomson, Rob Knight, Viviana Gradinaru, Bruce R Hamaker, Christopher K Glass, Sarkis K Mazmanian	ELife	2022-11-08	Abstract
RISE FOR HEALTH: Rationale and protocol for a prospective cohort study of bladder health in women.	Ariana L Smith, Kyle Rudser, Bernard L Harlow, Gerald McGwin, Julia Barthold, Sonya S Brady, Linda Brubaker, Shayna D Cunningham, James W Griffith, Kim Kenton, Heather Klusaritz, Cora E Lewis, Emily S Lukacz, Julia Maki, Alayne D Markland, Elizabeth R Mueller, Diane K Newman, Jesse Nodora, Leslie M Rickey, Todd Rockwood, Melissa Simon, Jean F Wyman, Siobhan Sutcliffe,	Neurourology And Urodynamics	2022-11-02	Abstract
Mucosal and Systemic Responses to Severe Acute Respiratory Syndrome Coronavirus 2 Vaccination Determined by Severity of Primary Infection.	Mohammad M Sajadi, Amber Myers, James Logue, Saman Saadat, Narjes Shokatpour, James Quinn, Michelle Newman, Meagan Deming, Zahra Rikhtegaran Tehrani, Laurence S Magder, Maryam Karimi, Abdolrahim Abbasi, Mike Shlyak, Lauren Baracco, Matthew B Frieman, Shane Crotty, Anthony D Harris	MSphere	2022-11-02	Abstract
Coordination of CcpA and CodY Regulators in Staphylococcus aureus USA300 Strains.	Saugat Poudel, Ying Hefner, Richard Szubin, Anand Sastry, Ye Gao, Victor Nizet, Bernhard O Palsson	MSystems	2022-11-02	Abstract
Pan-Genome Analysis of Transcriptional Regulation in Six Salmonella enterica Serovar Typhimurium Strains Reveals Their Different Regulatory Structures.	Yuan Yuan, Yara Seif, Kevin Rychel, Reo Yoo, Siddharth Chauhan, Saugat Poudel, Tahani Al-Bulushi, Bernhard O Palsson, Anand V Sastry	MSystems	2022-11-01	Abstract
synDNA-a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing.	Livia S Zaramela, Megan Tjuanta, Oriane Moyne, Maxwell Neal, Karsten Zengler	MSystems	2022-11-01	Abstract
Drug transporters OAT1 and OAT3 have specific effects on multiple organs and gut microbiome as revealed by contextualized metabolic network reconstructions.	Neema Jamshidi, Sanjay K Nigam	Scientific Reports	2022-10-31	Abstract
The rapidly evolving monkeypox epidemic: A call to action to leave no one behind.	Steffanie A Strathdee, Davey M Smith, Megan Halbrook, Placide Mbala-Kingebeni, Shira Abeles, Francesca Torriani, Anne Rimoin	PLoS Medicine	2022-10-31	Abstract
Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq.	Sara E Vazquez, Sabrina A Mann, Aaron Bodansky, Andrew F Kung, Zoe Quandt, Elise M N Ferré, Nils Landegren, Daniel Eriksson, Paul Bastard, Shen-Ying Zhang, Jamin Liu, Anthea Mitchell, Irina Proekt, David Yu, Caleigh Mandel-Brehm, Chung-Yu Wang, Brenda Miao, Gavin Sowa, Kelsey Zorn, Alice Y Chan, Veronica M Tagi, Chisato Shimizu, Adriana Tremoulet, Kara Lynch, Michael R Wilson, Olle Kämpe, Kerry Dobbs, Ottavia M Delmonte, Rosa Bacchetta, Luigi D Notarangelo, Jane C Burns, Jean-Laurent Casanova, Michail S Lionakis, Troy R Torgerson, Mark S Anderson, Joseph L DeRisi	ELife	2022-10-27	Abstract
The Vi Capsular Polysaccharide of Salmonella Typhi Promotes Macrophage Phagocytosis by Binding the Human C-Type Lectin DC-SIGN.	Lillian F Zhang, Bernd Lepenies, Sayuri Nakamae, Briana M Young, Renato L Santos, Manuela Raffatellu, Brian A Cobb, Hirotaka Hiyoshi, Andreas J Bäumler	MBio	2022-10-26	Abstract
Emergence of SARS-CoV-2 escape mutations during Bamlanivimab therapy in a phase II randomized clinical trial.	Manish C Choudhary, Kara W Chew, Rinki Deo, James P Flynn, James Regan, Charles R Crain, Carlee Moser, Michael D Hughes, Justin Ritz, Ruy M Ribeiro, Ruian Ke, Joan A Dragavon, Arzhang Cyrus Javan, Ajay Nirula, Paul Klekotka, Alexander L Greninger, Courtney V Fletcher, Eric S Daar, David A Wohl, Joseph J Eron, Judith S Currier, Urvi M Parikh, Scott F Sieg, Alan S Perelson, Robert W Coombs, Davey M Smith, Jonathan Z Li,	Nature Microbiology	2022-10-26	Abstract
Lessons for Understanding Central Nervous System HIV Reservoirs from the Last Gift Program.	Patricia K Riggs, Antoine Chaillon, Guochun Jiang, Scott L Letendre, Yuyang Tang, Jeff Taylor, Andrew Kaytes, Davey M Smith, Karine Dubé, Sara Gianella	Current HIV/AIDS Reports	2022-10-19	Abstract
Anthrax Meningoencephalitis and Intracranial Hemorrhage.	Nicholas Caffes, Katherine Hendricks, John S Bradley, Nancy A Twenhafel, J Marc Simard	Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America	2022-10-17	Abstract
Systematic Review of Hospital Treatment Outcomes for Naturally Acquired and Bioterrorism-Related Anthrax, 1880-2018.	Marissa K Person, Rachel Cook, John S Bradley, Nathaniel Hupert, William A Bower, Katherine Hendricks	Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America	2022-10-17	Abstract
Inexpensive, Accurate, and Stable Method to Quantitate Blood Alanine Aminotransferase (ALT) Levels.	Phillipp Hartmann, Bernd Schnabl	Methods And Protocols	2022-10-14	Abstract
Illuminating the dark metabolome of Pseudo-nitzschia-microbiome associations.	Irina Koester, Zachary A Quinlan, Louis-Félix Nothias, Margot E White, Ariel Rabines, Daniel Petras, John K Brunson, Kai Dührkop, Marcus Ludwig, Sebastian Böcker, Farooq Azam, Andrew E Allen, Pieter C Dorrestein, Lihini I Aluwihare	Environmental Microbiology	2022-10-12	Abstract
Allergen Content and Protease Activity in Milk Feeds from Mothers of Preterm Infants.	Kathleen Luskin, Diba Mortazavi, Sherry Bai-Tong, Kerri Bertrand, Christina Chambers, Keriann Schulkers-Escalante, Alla Ahmad, Stephanie Luedtke, Anthony J O'Donoghue, Majid Ghassemian, Bob Geng, Sandra L Leibel, Sydney A Leibel	Breastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine	2022-10-12	Abstract
Transcriptomic profiling of sporadic Alzheimer's disease patients.	Andrew B Caldwell, Balaji G Anantharaman, Srinivasan Ramachandran, Phuong Nguyen, Qing Liu, Ivy Trinh, Douglas R Galasko, Paula A Desplats, Steven L Wagner, Shankar Subramaniam	Molecular Brain	2022-10-12	Abstract
OAT, OATP, and MRP Drug Transporters and the Remote Sensing and Signaling Theory.	Sanjay K Nigam, Jeffry C Granados	Annual Review Of Pharmacology And Toxicology	2022-10-07	Abstract
Electrochemical potential enables dormant spores to integrate environmental signals.	Kaito Kikuchi, Leticia Galera-Laporta, Colleen Weatherwax, Jamie Y Lam, Eun Chae Moon, Emmanuel A Theodorakis, Jordi Garcia-Ojalvo, Gürol M Süel	Science (New York, N.Y.)	2022-10-06	Abstract
Opposing roles of hepatic stellate cell subpopulations in hepatocarcinogenesis.	Aveline Filliol, Yoshinobu Saito, Ajay Nair, Dianne H Dapito, Le-Xing Yu, Aashreya Ravichandra, Sonakshi Bhattacharjee, Silvia Affo, Naoto Fujiwara, Hua Su, Qiuyan Sun, Thomas M Savage, John R Wilson-Kanamori, Jorge M Caviglia, LiKang Chin, Dongning Chen, Xiaobo Wang, Stefano Caruso, Jin Ku Kang, Amit Dipak Amin, Sebastian Wallace, Ross Dobie, Deqi Yin, Oscar M Rodriguez-Fiallos, Chuan Yin, Adam Mehal, Benjamin Izar, Richard A Friedman, Rebecca G Wells, Utpal B Pajvani, Yujin Hoshida, Helen E Remotti, Nicholas Arpaia, Jessica Zucman-Rossi, Michael Karin, Neil C Henderson, Ira Tabas, Robert F Schwabe	Nature	2022-10-05	Abstract
AHR is a master regulator of diverse pathways in endogenous metabolism.	Jeffry C Granados, Kian Falah, Imhoi Koo, Ethan W Morgan, Gary H Perdew, Andrew D Patterson, Neema Jamshidi, Sanjay K Nigam	Scientific Reports	2022-10-05	Abstract
Age-dependent aggregation of ribosomal RNA-binding proteins links deterioration in chromatin stability with challenges to proteostasis.	Julie Paxman, Zhen Zhou, Richard O'Laughlin, Yuting Liu, Yang Li, Wanying Tian, Hetian Su, Yanfei Jiang, Shayna E Holness, Elizabeth Stasiowski, Lev S Tsimring, Lorraine Pillus, Jeff Hasty, Nan Hao	ELife	2022-10-04	Abstract
A pals-25 gain-of-function allele triggers systemic resistance against natural pathogens of C. elegans.	Spencer S Gang, Manish Grover, Kirthi C Reddy, Deevya Raman, Ya-Ting Chang, Damian C Ekiert, Michalis Barkoulas, Emily R Troemel	PLoS Genetics	2022-10-03	Abstract
Transfer of antibiotics and their metabolites in human milk: implications for infant health and microbiota.	Sydney P Thomas, Erce Denizer, Simone Zuffa, Brookie M Best, Lars Bode, Christina D Chambers, Pieter C Dorrestein, George Y Liu, Jeremiah D Momper, Victor Nizet, Shirley M Tsunoda, Adriana H Tremoulet	Pharmacotherapy	2022-10-01	Abstract
Targeted protein S-nitrosylation of ACE2 inhibits SARS-CoV-2 infection.	Chang-Ki Oh, Tomohiro Nakamura, Nathan Beutler, Xu Zhang, Juan Piña-Crespo, Maria Talantova, Swagata Ghatak, Dorit Trudler, Lauren N Carnevale, Scott R McKercher, Malina A Bakowski, Jolene K Diedrich, Amanda J Roberts, Ashley K Woods, Victor Chi, Anil K Gupta, Mia A Rosenfeld, Fiona L Kearns, Lorenzo Casalino, Namir Shaabani, Hejun Liu, Ian A Wilson, Rommie E Amaro, Dennis R Burton, John R Yates, Cyrus Becker, Thomas F Rogers, Arnab K Chatterjee, Stuart A Lipton	Nature Chemical Biology	2022-09-29	Abstract
A Trait-Based Approach to Predicting Viral Host-Range Evolvability.	Hannah M Strobel, Elizabeth C Stuart, Justin R Meyer	Annual Review Of Virology	2022-09-29	Abstract
The gastrointestinal and microbiome impact of a resistant starch blend from potato, banana, and apple fibers: A randomized clinical trial using smart caps.	Douglas Hanes, Brent Nowinski, Joseph J Lamb, Ilona A Larson, Daniel McDonald, Rob Knight, Se Jin Song, Noelle Patno	Frontiers In Nutrition	2022-09-29	Abstract
Organic Anion Transporters (OAT) and Other SLC22 Transporters in Progression of Renal Cell Carcinoma.	Thomas C Whisenant, Sanjay K Nigam	Cancers	2022-09-29	Abstract
Evolution of the ancestral mammalian karyotype and syntenic regions.	Joana Damas, Marco Corbo, Jaebum Kim, Jason Turner-Maier, Marta Farré, Denis M Larkin, Oliver A Ryder, Cynthia Steiner, Marlys L Houck, Shaune Hall, Lily Shiue, Stephen Thomas, Thomas Swale, Mark Daly, Jonas Korlach, Marcela Uliano-Silva, Camila J Mazzoni, Bruce W Birren, Diane P Genereux, Jeremy Johnson, Kerstin Lindblad-Toh, Elinor K Karlsson, Martin T Nweeia, Rebecca N Johnson, , Harris A Lewin	Proceedings Of The National Academy Of Sciences Of The United States Of America	2022-09-26	Abstract
Asymptomatic or symptomatic SARS-CoV-2 infection plus vaccination confers increased adaptive immunity to variants of concern.	Peifang Sun, Irene Ramos, Camila H Coelho, Alba Grifoni, Corey A Balinsky, Sindhu Vangeti, Alison Tarke, Nathaniel I Bloom, Vihasi Jani, Silvia J Jakubski, David A Boulifard, Elizabeth Cooper, Carl W Goforth, Jan Marayag, Amethyst Marrone, Edgar Nunez, Lindsey White, Chad K Porter, Victor A Sugiharto, Megan Schilling, Avinash S Mahajan, Charmagne Beckett, Alessandro Sette, Stuart C Sealfon, Shane Crotty, Andrew G Letizia	IScience	2022-09-23	Abstract
Nanoparticle-modified microrobots for in vivo antibiotic delivery to treat acute bacterial pneumonia.	Fangyu Zhang, Jia Zhuang, Zhengxing Li, Hua Gong, Berta Esteban-Fernández de Ávila, Yaou Duan, Qiangzhe Zhang, Jiarong Zhou, Lu Yin, Emil Karshalev, Weiwei Gao, Victor Nizet, Ronnie H Fang, Liangfang Zhang, Joseph Wang	Nature Materials	2022-09-22	Abstract
Long-primed germinal centres with enduring affinity maturation and clonal migration.	Jeong Hyun Lee, Henry J Sutton, Christopher A Cottrell, Ivy Phung, Gabriel Ozorowski, Leigh M Sewall, Rebecca Nedellec, Catherine Nakao, Murillo Silva, Sara T Richey, Jonathan L Torre, Wen-Hsin Lee, Erik Georgeson, Michael Kubitz, Sam Hodges, Tina-Marie Mullen, Yumiko Adachi, Kimberly M Cirelli, Amitinder Kaur, Carolina Allers, Marissa Fahlberg, Brooke F Grasperge, Jason P Dufour, Faith Schiro, Pyone P Aye, Oleksandr Kalyuzhniy, Alessia Liguori, Diane G Carnathan, Guido Silvestri, Xiaoying Shen, David C Montefiori, Ronald S Veazey, Andrew B Ward, Lars Hangartner, Dennis R Burton, Darrell J Irvine, William R Schief, Shane Crotty	Nature	2022-09-21	Abstract
Actinopolymorphols E and F, pyrazine alkaloids from a marine sediment-derived bacterium Streptomyces sp.	Sohee Kim, Prima F Hillman, Ji Young Lee, Juri Lee, Jihye Lee, Sun-Shin Cha, Dong-Chan Oh, Sang-Jip Nam, William Fenical	The Journal Of Antibiotics	2022-09-15	Abstract
Strengthening of enterococcal biofilms by Esp.	Lindsey Spiegelman, Adrian Bahn-Suh, Elizabeth T Montaño, Ling Zhang, Greg L Hura, Kathryn A Patras, Amit Kumar, F Akif Tezcan, Victor Nizet, Susan E Tsutakawa, Partho Ghosh	PLoS Pathogens	2022-09-14	Abstract
The Transcription Factor YY-1 Is an Essential Regulator of T Follicular Helper Cell Differentiation.	Simon Bélanger, Sonya Haupt, Brian L Freeman, Adam J Getzler, Huitian Diao, Matthew E Pipkin, Shane Crotty	Journal Of Immunology (Baltimore, Md. : 1950)	2022-09-12	Abstract
Siderophore Immunization Restricted Colonization of Adherent-Invasive Escherichia coli and Ameliorated Experimental Colitis.	Romana R Gerner, Suzana Hossain, Artur Sargun, Kareem Siada, Grant J Norton, Tengfei Zheng, Wilma Neumann, Sean-Paul Nuccio, Elizabeth M Nolan, Manuela Raffatellu	MBio	2022-09-12	Abstract
Development of host immune response to bacteriophage in a lung transplant recipient on adjunctive phage therapy for a multidrug resistant pneumonia.	Jennifer M Dan, Susan M Lehman, Rita Al-Kolla, Samuel Penziner, Kamyar Afshar, Gordon Yung, Eugene Golts, Nancy Law, Cathy Logan, Zsuzsanna Kovach, Gill Mearns, Robert T Schooley, Saima Aslam, Shane Crotty	The Journal Of Infectious Diseases	2022-09-09	Abstract
Assembling a Reference Phylogenomic Tree of Bacteria and Archaea by Summarizing Many Gene Phylogenies.	Qiyun Zhu, Siavash Mirarab	Methods In Molecular Biology (Clifton, N.J.)	2022-09-09	Abstract
Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References.	Daniel Hakim, Stephen Wandro, Karsten Zengler, Livia S Zaramela, Brent Nowinski, Austin Swafford, Qiyun Zhu, Se Jin Song, Antonio Gonzalez, Daniel McDonald, Rob Knight	MSystems	2022-09-08	Abstract
A single-administration therapeutic interfering particle reduces SARS-CoV-2 viral shedding and pathogenesis in hamsters.	Sonali Chaturvedi, Nathan Beutler, Gustavo Vasen, Michael Pablo, Xinyue Chen, Giuliana Calia, Lauren Buie, Robert Rodick, Davey Smith, Thomas Rogers, Leor S Weinberger	Proceedings Of The National Academy Of Sciences Of The United States Of America	2022-09-08	Abstract
Heterogeneous multimeric metabolite ion species observed in LC-MS based metabolomics data sets.	Yasin El Abiead, Christoph Bueschl, Lisa Panzenboeck, Mingxun Wang, Maria Doppler, Bernhard Seidl, Jürgen Zanghellini, Pieter C Dorrestein, Gunda Koellensperger	Analytica Chimica Acta	2022-09-08	Abstract
Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa.	Akanksha Rajput, Hannah Tsunemoto, Anand V Sastry, Richard Szubin, Kevin Rychel, Siddharth M Chauhan, Joe Pogliano, Bernhard O Palsson	Nucleic Acids Research	2022-09-06	Abstract
Research gaps and opportunities in precision nutrition: an NIH workshop report.	Bruce Y Lee, José M Ordovás, Elizabeth J Parks, Cheryl A M Anderson, Albert-László Barabási, Steven K Clinton, Kayla de la Haye, Valerie B Duffy, Paul W Franks, Elizabeth M Ginexi, Kristian J Hammond, Erin C Hanlon, Michael Hittle, Emily Ho, Abigail L Horn, Richard S Isaacson, Patricia L Mabry, Susan Malone, Corby K Martin, Josiemer Mattei, Simin Nikbin Meydani, Lorene M Nelson, Marian L Neuhouser, Brendan Parent, Nicolaas P Pronk, Helen M Roche, Suchi Saria, Frank A J L Scheer, Eran Segal, Mary Ann Sevick, Tim D Spector, Linda B Van Horn, Krista A Varady, Venkata Saroja Voruganti, Marie F Martinez	The American Journal Of Clinical Nutrition	2022-09-02	Abstract
-Acetyl Migration within the Sialic Acid Side Chain: A Mechanistic Study Using the Nanoreactor.	Lisa Oh, Yang Ji, Wanqing Li, Ajit Varki, Xi Chen, Lee-Ping Wang	Biochemistry	2022-09-02	Abstract
Limited microbiome differences in captive and semi-wild primate populations consuming similar diets.	Sahana Kuthyar, Karli Watson, Shi Huang, Lauren J N Brent, Michael Platt, Julie Horvath, Janis Gonzalez-Martinez, Melween Martínez, Filipa Godoy-Vitorino, Rob Knight, Maria Gloria Dominguez-Bello, Katherine R Amato	FEMS Microbiology Ecology	2022-09-01	Abstract
Hyponatremia in Patients With Multisystem Inflammatory Syndrome in Children.	Tatyana Mills, Aditi Trivedi, Adriana H Tremoulet, Daniel Hershey, Jane C Burns	The Pediatric Infectious Disease Journal	2022-09-01	Abstract
Proof of Concept for the Detection with Custom Printed Electrodes of Enterobactin as a Marker of .	Alexandra Canciu, Andreea Cernat, Mihaela Tertis, Silvia Botarca, Madalina Adriana Bordea, Joseph Wang, Cecilia Cristea	International Journal Of Molecular Sciences	2022-08-31	Abstract
SARS-CoV-2 Omicron Variant of Concern: Everything You Wanted to Know about Omicron but Were Afraid to Ask.	Dong Hoon Shin, Davey M Smith, Jun Yong Choi	Yonsei Medical Journal	2022-08-31	Abstract
Introducing the "Microbiomes and Social Equity" Special Collection.	Sue Ishaq, Jack Gilbert	MSystems	2022-08-29	Abstract
Location-specific signatures of Crohn's disease at a multi-omics scale.	Carlos G Gonzalez, Robert H Mills, Qiyun Zhu, Consuelo Sauceda, Rob Knight, Parambir S Dulai, David J Gonzalez	Microbiome	2022-08-24	Abstract
Multi-omics analyses of airway host-microbe interactions in chronic obstructive pulmonary disease identify potential therapeutic interventions.	Zhengzheng Yan, Boxuan Chen, Yuqiong Yang, Xinzhu Yi, Mingyuan Wei, Gertrude Ecklu-Mensah, Mary M Buschmann, Haiyue Liu, Jingyuan Gao, Weijie Liang, Xiaomin Liu, Junhao Yang, Wei Ma, Zhenyu Liang, Fengyan Wang, Dandan Chen, Lingwei Wang, Weijuan Shi, Martin R Stampfli, Pan Li, Shenhai Gong, Xia Chen, Wensheng Shu, Emad M El-Omar, Jack A Gilbert, Martin J Blaser, Hongwei Zhou, Rongchang Chen, Zhang Wang	Nature Microbiology	2022-08-22	Abstract
Antiviral and clinical activity of bamlanivimab in a randomized trial of non-hospitalized adults with COVID-19.	Kara W Chew, Carlee Moser, Eric S Daar, David A Wohl, Jonathan Z Li, Robert W Coombs, Justin Ritz, Mark Giganti, Arzhang Cyrus Javan, Yijia Li, Manish C Choudhary, Rinki Deo, Carlos Malvestutto, Paul Klekotka, Karen Price, Ajay Nirula, William Fischer, Veenu Bala, Ruy M Ribeiro, Alan S Perelson, Courtney V Fletcher, Joseph J Eron, Judith S Currier, , Michael D Hughes, Davey M Smith	Nature Communications	2022-08-22	Abstract
SARS-CoV-2 and MERS-CoV Spike Protein Binding Studies Support Stable Mimic of Bound 9--Acetylated Sialic Acids.	Lisa Oh, Ajit Varki, Xi Chen, Lee-Ping Wang	Molecules (Basel, Switzerland)	2022-08-20	Abstract
Structural Basis of Stereospecific Vanadium-Dependent Haloperoxidase Family Enzymes in Napyradiomycin Biosynthesis.	Percival Yang-Ting Chen, Sanjoy Adak, Jonathan R Chekan, David K Liscombe, Akimasa Miyanaga, Peter Bernhardt, Stefan Diethelm, Elisha N Fielding, Jonathan H George, Zachary D Miles, Lauren A M Murray, Taylor S Steele, Jaclyn M Winter, Joseph P Noel, Bradley S Moore	Biochemistry	2022-08-19	Abstract
Interdependence of Sebaceous Lipids and the Microbiome in Atopic Dermatitis.	Samia Almoughrabie, Richard L Gallo	The Journal Of Investigative Dermatology	2022-08-16	Abstract
Comparison of the APAS Independence Automated Plate Reader System with the Manual Standard of Care for Processing Urine Culture Specimens.	Megan Chiu, Peiting Kuo, Khrissa Lecrone, Andrew Garcia, Ruohui Chen, Natalie E Quach, Xin M Tu, David T Pride	Microbiology Spectrum	2022-08-16	Abstract
A Self-Immolative Fluorescent Probe for Selective Detection of SARS-CoV-2 Main Protease.	Ming Xu, Jiajing Zhou, Yong Cheng, Zhicheng Jin, Alex E Clark, Tengyu He, Wonjun Yim, Yi Li, Yu-Ci Chang, Zhuohong Wu, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Michael D Todd, Jesse V Jokerst	Analytical Chemistry	2022-08-16	Abstract
Design and validation of HIV peptide pools for detection of HIV-specific CD4+ and CD8+ T cells.	Rita Al-Kolla, Alba Grifoni, Shane Crotty, Alessandro Sette, Sara Gianella, Jennifer Dan	PloS One	2022-08-16	Abstract
Author Correction: Cross-reactive immunity against the SARS-CoV-2 Omicron variant is low in pediatric patients with prior COVID-19 or MIS-C.	Juanjie Tang, Tanya Novak, Julian Hecker, Gabrielle Grubbs, Fatema Tuz Zahra, Lorenza Bellusci, Sara Pourhashemi, Janet Chou, Kristin Moffitt, Natasha B Halasa, Stephanie P Schwartz, Tracie C Walker, Keiko M Tarquinio, Matt S Zinter, Mary A Staat, Shira J Gertz, Natalie Z Cvijanovich, Jennifer E Schuster, Laura L Loftis, Bria M Coates, Elizabeth H Mack, Katherine Irby, Julie C Fitzgerald, Courtney M Rowan, Michele Kong, Heidi R Flori, Aline B Maddux, Steven L Shein, Hillary Crandall, Janet R Hume, Charlotte V Hobbs, Adriana H Tremoulet, Chisato Shimizu, Jane C Burns, Sabrina R Chen, Hye Kyung Moon, Christoph Lange, Adrienne G Randolph, Surender Khurana	Nature Communications	2022-08-12	Abstract
The Microbiome and Mental Health Across the Lifespan.	Faith Dickerson, Amanda Hazel Dilmore, Filipa Godoy-Vitorino, Tanya T Nguyen, Martin Paulus, Adrian A Pinto-Tomas, Cristofer Moya-Roman, Ibrahim Zuniga-Chaves, Emily G Severance, Dilip V Jeste	Current Topics In Behavioral Neurosciences	2022-08-11	Abstract
Broadly neutralizing antibodies to SARS-related viruses can be readily induced in rhesus macaques.	Wan-Ting He, Meng Yuan, Sean Callaghan, Rami Musharrafieh, Ge Song, Murillo Silva, Nathan Beutler, Wen-Hsin Lee, Peter Yong, Jonathan L Torres, Mariane Melo, Panpan Zhou, Fangzhu Zhao, Xueyong Zhu, Linghang Peng, Deli Huang, Fabio Anzanello, James Ricketts, Mara Parren, Elijah Garcia, Melissa Ferguson, William Rinaldi, Stephen A Rawlings, David Nemazee, Davey M Smith, Bryan Briney, Yana Safonova, Thomas F Rogers, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Shane Crotty, Darrell J Irvine, Andrew B Ward, Ian A Wilson, Dennis R Burton, Raiees Andrabi	Science Translational Medicine	2022-08-10	Abstract
Acetate reprograms gut microbiota during alcohol consumption.	Cameron Martino, Livia S Zaramela, Bei Gao, Mallory Embree, Janna Tarasova, Seth J Parker, Yanhan Wang, Huikuan Chu, Peng Chen, Kuei-Chuan Lee, Daniela Domingos Galzerani, Jivani M Gengatharan, Asama Lekbua, Maxwell Neal, Rob Knight, Hidekazu Tsukamoto, Christian M Metallo, Bernd Schnabl, Karsten Zengler	Nature Communications	2022-08-08	Abstract
Native metabolomics identifies the rivulariapeptolide family of protease inhibitors.	Raphael Reher, Allegra T Aron, Pavla Fajtová, Paolo Stincone, Berenike Wagner, Alicia I Pérez-Lorente, Chenxi Liu, Ido Y Ben Shalom, Wout Bittremieux, Mingxun Wang, Kyowon Jeong, Marie L Matos-Hernandez, Kelsey L Alexander, Eduardo J Caro-Diaz, C Benjamin Naman, J H William Scanlan, Phil M M Hochban, Wibke E Diederich, Carlos Molina-Santiago, Diego Romero, Khaled A Selim, Peter Sass, Heike Brötz-Oesterhelt, Chambers C Hughes, Pieter C Dorrestein, Anthony J O'Donoghue, William H Gerwick, Daniel Petras	Nature Communications	2022-08-08	Abstract
Breathing and tilting: mesoscale simulations illuminate influenza glycoprotein vulnerabilities.	Lorenzo Casalino, Christian Seitz, Julia Lederhofer, Yaroslav Tsybovsky, Ian A Wilson, Masaru Kanekiyo, Rommie E Amaro	BioRxiv : The Preprint Server For Biology	2022-08-07	Abstract
Intestinal transgene delivery with native E. coli chassis allows persistent physiological changes.	Baylee J Russell, Steven D Brown, Nicole Siguenza, Irene Mai, Anand R Saran, Amulya Lingaraju, Erica S Maissy, Ana C Dantas Machado, Antonio F M Pinto, Concepcion Sanchez, Leigh-Ana Rossitto, Yukiko Miyamoto, R Alexander Richter, Samuel B Ho, Lars Eckmann, Jeff Hasty, David J Gonzalez, Alan Saghatelian, Rob Knight, Amir Zarrinpar	Cell	2022-08-04	Abstract
Architecture and self-assembly of the jumbo bacteriophage nuclear shell.	Thomas G Laughlin, Amar Deep, Amy M Prichard, Christian Seitz, Yajie Gu, Eray Enustun, Sergey Suslov, Kanika Khanna, Erica A Birkholz, Emily Armbruster, J Andrew McCammon, Rommie E Amaro, Joe Pogliano, Kevin D Corbett, Elizabeth Villa	Nature	2022-08-03	Abstract
Duodenal CD8+ T resident memory cell apoptosis contributes to gut barrier dysfunction and microbial translocation in early alcohol-associated liver disease in humans.	Luca Maccioni, Axelle Loriot, Joseph Dewulf, Guido Bommer, Yves Horsmans, Nicolas Lanthier, Isabelle Leclercq, Bernd Schnabl, Peter Stärkel	Alimentary Pharmacology & Therapeutics	2022-08-02	Abstract
Fostering Sustainable Biomedical Research Training in Mozambique: A Spin-Off of the Medical Education Partnership Initiative.	Emília Virgínia Noormahomed, Sérgio Noormahomed, Delfina Hlashwayo, Emília Martins, Mamudo Ismail, Stephen W Bickler, Jean Nachega, Manuel Mahoche, Kim E Barrett, Constance A Benson, Robert T Schooley	Annals Of Global Health	2022-08-02	Abstract
Analysis of the FAST™ system for expedited identification and antimicrobial susceptibility testing of bloodborne pathogens.	Peiting Kuo, Khrissa LeCrone, Megan Chiu, Susan Realegeno, David T Pride	Diagnostic Microbiology And Infectious Disease	2022-07-30	Abstract
Microbiota succession throughout life from the cradle to the grave.	Cameron Martino, Amanda Hazel Dilmore, Zachary M Burcham, Jessica L Metcalf, Dilip Jeste, Rob Knight	Nature Reviews. Microbiology	2022-07-29	Abstract
RNA Fluorescence in situ Hybridization (FISH) to Visualize Microbial Colonization and Infection in Caenorhabditis elegans Intestines.	Dalaena E Rivera, Vladimir Lažetić, Emily R Troemel, Robert J Luallen	Journal Of Visualized Experiments : JoVE	2022-07-27	Abstract
Non-invasive skin sampling detects systemically administered drugs in humans.	Morgan Panitchpakdi, Kelly C Weldon, Alan K Jarmusch, Emily C Gentry, Arianna Choi, Yadira Sepulveda, Shaden Aguirre, Kunyang Sun, Jeremiah D Momper, Pieter C Dorrestein, Shirley M Tsunoda	PloS One	2022-07-26	Abstract
Correction for Rudicell et al., "High Prevalence of Simian Immunodeficiency Virus Infection in a Community of Savanna Chimpanzees".	Rebecca S Rudicell, Alex K Piel, Fiona Stewart, Deborah L Moore, Gerald H Learn, Yingying Li, Jun Takehisa, Lilian Pintea, George M Shaw, Jim Moore, Paul M Sharp, Beatrice H Hahn	Journal Of Virology	2022-07-26	Abstract
Lymphatic-preserving treatment sequencing with immune checkpoint inhibition unleashes cDC1-dependent antitumor immunity in HNSCC.	Robert Saddawi-Konefka, Aoife O'Farrell, Farhoud Faraji, Lauren Clubb, Michael M Allevato, Shawn M Jensen, Bryan S Yung, Zhiyong Wang, Victoria H Wu, Nana-Ama Anang, Riyam Al Msari, Shiruyeh Schokrpur, Ida Franiak Pietryga, Alfredo A Molinolo, Jill P Mesirov, Aaron B Simon, Bernard A Fox, Jack D Bui, Andrew Sharabi, Ezra E W Cohen, Joseph A Califano, J Silvio Gutkind	Nature Communications	2022-07-25	Abstract
Protease-Responsive Peptide-Conjugated Mitochondrial-Targeting AIEgens for Selective Imaging and Inhibition of SARS-CoV-2-Infected Cells.	Yong Cheng, Alex E Clark, Jiajing Zhou, Tengyu He, Yi Li, Raina M Borum, Matthew N Creyer, Ming Xu, Zhicheng Jin, Jingcheng Zhou, Wonjun Yim, Zhuohong Wu, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Jesse V Jokerst	ACS Nano	2022-07-25	Abstract
Association of compassion and empathy with prosocial health behaviors and attitudes in a pandemic.	Melissa M Karnaze, John Bellettiere, Cinnamon S Bloss	PloS One	2022-07-22	Abstract
TREM2 macrophages induced by human lipids drive inflammation in acne lesions.	Tran H Do, Feiyang Ma, Priscila R Andrade, Rosane Teles, Bruno J de Andrade Silva, Chanyue Hu, Alejandro Espinoza, Jer-En Hsu, Chun-Seok Cho, Myungjin Kim, Jingyue Xi, Xianying Xing, Olesya Plazyo, Lam C Tsoi, Carol Cheng, Jenny Kim, Bryan D Bryson, Alan M O'Neill, Marco Colonna, Johann E Gudjonsson, Eynav Klechevsky, Jun Hee Lee, Richard L Gallo, Barry R Bloom, Matteo Pellegrini, Robert L Modlin	Science Immunology	2022-07-22	Abstract
Coupling of distant ATPase domains in the circadian clock protein KaiC.	Jeffrey A Swan, Colby R Sandate, Archana G Chavan, Alfred M Freeberg, Diana Etwaru, Dustin C Ernst, Joseph G Palacios, Susan S Golden, Andy LiWang, Gabriel C Lander, Carrie L Partch	Nature Structural & Molecular Biology	2022-07-21	Abstract
Harnessing the microbiome to prevent global biodiversity loss.	Raquel S Peixoto, Christian R Voolstra, Michael Sweet, Carlos M Duarte, Susana Carvalho, Helena Villela, Jeantine E Lunshof, Lone Gram, Douglas C Woodhams, Jens Walter, Anna Roik, Ute Hentschel, Rebecca Vega Thurber, Brendan Daisley, Blake Ushijima, Daniele Daffonchio, Rodrigo Costa, Tina Keller-Costa, Jeff S Bowman, Alexandre S Rosado, Gregor Reid, Christopher E Mason, Jenifer B Walke, Torsten Thomas, Gabriele Berg	Nature Microbiology	2022-07-21	Abstract
Omicron spike function and neutralizing activity elicited by a comprehensive panel of vaccines.	John E Bowen, Amin Addetia, Ha V Dang, Cameron Stewart, Jack T Brown, William K Sharkey, Kaitlin R Sprouse, Alexandra C Walls, Ignacio G Mazzitelli, Jennifer K Logue, Nicholas M Franko, Nadine Czudnochowski, Abigail E Powell, Exequiel Dellota, Kumail Ahmed, Asefa Shariq Ansari, Elisabetta Cameroni, Andrea Gori, Alessandra Bandera, Christine M Posavad, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Shane Crotty, Najeeha Talat Iqbal, Davide Corti, Jorge Geffner, Gyorgy Snell, Renata Grifantini, Helen Y Chu, David Veesler	Science (New York, N.Y.)	2022-07-19	Abstract
Adaptive laboratory evolution and independent component analysis disentangle complex vancomycin adaptation trajectories.	Anaëlle Fait, Yara Seif, Kasper Mikkelsen, Saugat Poudel, Jerry M Wells, Bernhard O Palsson, Hanne Ingmer	Proceedings Of The National Academy Of Sciences Of The United States Of America	2022-07-19	Abstract
Association of Plasma Eicosanoid Levels With Immune, Viral, and Cognitive Outcomes in People With HIV.	Pragney Deme, Mohammed Moniruzzaman, David Moore, Robert Heaton, Ronald Ellis, Scott Letendre, Norman Haughey	Neurology	2022-07-18	Abstract
Mass Difference Matching Unfolds Hidden Molecular Structures of Dissolved Organic Matter.	Carsten Simon, Kai Dührkop, Daniel Petras, Vanessa-Nina Roth, Sebastian Böcker, Pieter C Dorrestein, Gerd Gleixner	Environmental Science & Technology	2022-07-14	Abstract
Genetic regulation of OAS1 nonsense-mediated decay underlies association with COVID-19 hospitalization in patients of European and African ancestries.	A Rouf Banday, Megan L Stanifer, Oscar Florez-Vargas, Olusegun O Onabajo, Brenen W Papenberg, Muhammad A Zahoor, Lisa Mirabello, Timothy J Ring, Chia-Han Lee, Paul S Albert, Evangelos Andreakos, Evgeny Arons, Greg Barsh, Leslie G Biesecker, David L Boyle, Mark S Brahier, Andrea Burnett-Hartman, Mary Carrington, Euijin Chang, Pyoeng Gyun Choe, Rex L Chisholm, Leandro M Colli, Clifton L Dalgard, Carolynn M Dude, Jeff Edberg, Nathan Erdmann, Heather S Feigelson, Benedito A Fonseca, Gary S Firestein, Adam J Gehring, Cuncai Guo, Michelle Ho, Steven Holland, Amy A Hutchinson, Hogune Im, Les'Shon Irby, Michael G Ison, Naima T Joseph, Hong Bin Kim, Robert J Kreitman, Bruce R Korf, Steven M Lipkin, Siham M Mahgoub, Iman Mohammed, Guilherme L Paschoalini, Jennifer A Pacheco, Michael J Peluso, Daniel J Rader, David T Redden, Marylyn D Ritchie, Brooke Rosenblum, M Elizabeth Ross, Hanaisa P Sant Anna, Sharon A Savage, Sudha Sharma, Eleni Siouti, Alicia K Smith, Vasiliki Triantafyllia, Joselin M Vargas, Jose D Vargas, Anurag Verma, Vibha Vij, Duane R Wesemann, Meredith Yeager, Xu Yu, Yu Zhang, Steeve Boulant, Stephen J Chanock, Jordan J Feld, Ludmila Prokunina-Olsson	Nature Genetics	2022-07-14	Abstract
The Prevalence and Determinants of NAFLD and MAFLD and Their Severity in the VA Primary Care Setting.	Aaron P Thrift, Theresa H Nguyen, Codey Pham, Maya Balakrishnan, Fasiha Kanwal, Rohit Loomba, Hao T Duong, David Ramsey, Hashem B El-Serag	Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association	2022-07-08	Abstract
Updating Urinary Microbiome Analyses to Enhance Biologic Interpretation.	Nazema Y Siddiqui, Li Ma, Linda Brubaker, Jialiang Mao, Carter Hoffman, Erin M Dahl, Zhuoqun Wang, Lisa Karstens	Frontiers In Cellular And Infection Microbiology	2022-07-08	Abstract
Comparative Dynamics of Delta and Omicron SARS-CoV-2 Variants across and between California and Mexico.	Sanjay R Mehta, Davey M Smith, Celia Boukadida, Antoine Chaillon	Viruses	2022-07-08	Abstract
Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.	Smruthi Karthikeyan, Joshua I Levy, Peter De Hoff, Greg Humphrey, Amanda Birmingham, Kristen Jepsen, Sawyer Farmer, Helena M Tubb, Tommy Valles, Caitlin E Tribelhorn, Rebecca Tsai, Stefan Aigner, Shashank Sathe, Niema Moshiri, Benjamin Henson, Adam M Mark, Abbas Hakim, Nathan A Baer, Tom Barber, Pedro Belda-Ferre, Marisol Chacón, Willi Cheung, Evelyn S Cresini, Emily R Eisner, Alma L Lastrella, Elijah S Lawrence, Clarisse A Marotz, Toan T Ngo, Tyler Ostrander, Ashley Plascencia, Rodolfo A Salido, Phoebe Seaver, Elizabeth W Smoot, Daniel McDonald, Robert M Neuhard, Angela L Scioscia, Alysson M Satterlund, Elizabeth H Simmons, Dismas B Abelman, David Brenner, Judith C Bruner, Anne Buckley, Michael Ellison, Jeffrey Gattas, Steven L Gonias, Matt Hale, Faith Hawkins, Lydia Ikeda, Hemlata Jhaveri, Ted Johnson, Vince Kellen, Brendan Kremer, Gary Matthews, Ronald W McLawhon, Pierre Ouillet, Daniel Park, Allorah Pradenas, Sharon Reed, Lindsay Riggs, Alison Sanders, Bradley Sollenberger, Angela Song, Benjamin White, Terri Winbush, Christine M Aceves, Catelyn Anderson, Karthik Gangavarapu, Emory Hufbauer, Ezra Kurzban, Justin Lee, Nathaniel L Matteson, Edyth Parker, Sarah A Perkins, Karthik S Ramesh, Refugio Robles-Sikisaka, Madison A Schwab, Emily Spencer, Shirlee Wohl, Laura Nicholson, Ian H Mchardy, David P Dimmock, Charlotte A Hobbs, Omid Bakhtar, Aaron Harding, Art Mendoza, Alexandre Bolze, David Becker, Elizabeth T Cirulli, Magnus Isaksson, Kelly M Schiabor Barrett, Nicole L Washington, John D Malone, Ashleigh Murphy Schafer, Nikos Gurfield, Sarah Stous, Rebecca Fielding-Miller, Richard S Garfein, Tommi Gaines, Cheryl Anderson, Natasha K Martin, Robert Schooley, Brett Austin, Duncan R MacCannell, Stephen F Kingsmore, William Lee, Seema Shah, Eric McDonald, Alexander T Yu, Mark Zeller, Kathleen M Fisch, Christopher Longhurst, Patty Maysent, David Pride, Pradeep K Khosla, Louise C Laurent, Gene W Yeo, Kristian G Andersen, Rob Knight	Nature	2022-07-07	Abstract
Enhancing untargeted metabolomics using metadata-based source annotation.	Julia M Gauglitz, Kiana A West, Wout Bittremieux, Candace L Williams, Kelly C Weldon, Morgan Panitchpakdi, Francesca Di Ottavio, Christine M Aceves, Elizabeth Brown, Nicole C Sikora, Alan K Jarmusch, Cameron Martino, Anupriya Tripathi, Michael J Meehan, Kathleen Dorrestein, Justin P Shaffer, Roxana Coras, Fernando Vargas, Lindsay DeRight Goldasich, Tara Schwartz, MacKenzie Bryant, Gregory Humphrey, Abigail J Johnson, Katharina Spengler, Pedro Belda-Ferre, Edgar Diaz, Daniel McDonald, Qiyun Zhu, Emmanuel O Elijah, Mingxun Wang, Clarisse Marotz, Kate E Sprecher, Daniela Vargas-Robles, Dana Withrow, Gail Ackermann, Lourdes Herrera, Barry J Bradford, Lucas Maciel Mauriz Marques, Juliano Geraldo Amaral, Rodrigo Moreira Silva, Flavio Protasio Veras, Thiago Mattar Cunha, Rene Donizeti Ribeiro Oliveira, Paulo Louzada-Junior, Robert H Mills, Paulina K Piotrowski, Stephanie L Servetas, Sandra M Da Silva, Christina M Jones, Nancy J Lin, Katrice A Lippa, Scott A Jackson, Rima Kaddurah Daouk, Douglas Galasko, Parambir S Dulai, Tatyana I Kalashnikova, Curt Wittenberg, Robert Terkeltaub, Megan M Doty, Jae H Kim, Kyung E Rhee, Julia Beauchamp-Walters, Kenneth P Wright, Maria Gloria Dominguez-Bello, Mark Manary, Michelli F Oliveira, Brigid S Boland, Norberto Peporine Lopes, Monica Guma, Austin D Swafford, Rachel J Dutton, Rob Knight, Pieter C Dorrestein	Nature Biotechnology	2022-07-07	Abstract
Spike-heparan sulfate interactions in SARS-CoV-2 infection.	Fiona L Kearns, Daniel R Sandoval, Lorenzo Casalino, Thomas M Clausen, Mia A Rosenfeld, Charlotte B Spliid, Rommie E Amaro, Jeffrey D Esko	Current Opinion In Structural Biology	2022-07-06	Abstract
Host-parasite coevolution promotes innovation through deformations in fitness landscapes.	Animesh Gupta, Luis Zaman, Hannah M Strobel, Jenna Gallie, Alita R Burmeister, Benjamin Kerr, Einat S Tamar, Roy Kishony, Justin R Meyer	ELife	2022-07-06	Abstract
Liver cirrhosis and immune dysfunction.	Elda Hasa, Phillipp Hartmann, Bernd Schnabl	International Immunology	2022-07-06	Abstract
Increased Innate Immune Susceptibility in Hyperpigmented Bacteriophage-Resistant Mutants of Pseudomonas aeruginosa.	Nitasha D Menon, Samuel Penziner, Elizabeth T Montaño, Raymond Zurich, David T Pride, Bipin G Nair, Geetha B Kumar, Victor Nizet	Antimicrobial Agents And Chemotherapy	2022-07-06	Abstract
Genomically Silent Refractory Gastric Cancer in a Young Patient Exhibits Overexpression of CXCL5.	Jonathan Hernandez, Michael A Turner, Prerna Bali, Mojgan Hosseini, Michael Bouvet, Kaitlyn Kelly, Marygorret Obonyo	Current Oncology (Toronto, Ont.)	2022-07-06	Abstract
Effects of single and dual hypocretin-receptor blockade or knockdown of hypocretin projections to the central amygdala on alcohol drinking in dependent male rats.	Gabriel M Aldridge, Tyler A Zarin, Adam J Brandner, Olivier George, Nicholas W Gilpin, Vez Repunte-Canonigo, Pietro P Sanna, George F Koob, Leandro F Vendruscolo, Brooke E Schmeichel	Addiction Neuroscience	2022-07-03	Abstract
Willingness of older Canadians with HIV to participate in HIV cure research near and after the end-of-life: A mixed-method study.	David Lessard, Karine Dube, Martin Bilodeau, Patrick Keeler, Shari Margolese, Ron Rosenes, Liliya Sinyavskaya, Madeleine Durand, Erika Benko, Colin Kovacs, Charlotte Guerlotté, Wangari E Tharao, Keresa Arnold, Renée Masching, Darien Taylor, José Sousa, Mario Ostrowski, Jeff Taylor, Andy Kaytes, Davey Smith, Sara Gianella Weibel, Nicolas Chomont, Jonathan B Angel, Jean-Pierre Routy, Eric Cohen, Bertrand Lebouche, Cecilia T Costiniuk	AIDS Research And Human Retroviruses	2022-07-01	Abstract
T Cells in Multisystem Inflammatory Syndrome in Children (MIS-C) Have a Predominant CD4+ T Helper Response to SARS-CoV-2 Peptides and Numerous Virus-Specific CD4- CD8- Double-Negative T Cells.	Li-En Hsieh, Jaeyoon Song, Alba Grifoni, Chisato Shimizu, Adriana H Tremoulet, Kirsten B Dummer, Jane C Burns, Alessandro Sette, Alessandra Franco	International Journal Of Molecular Sciences	2022-06-29	Abstract
Human Milk Oligosaccharides Impact Cellular and Inflammatory Gene Expression and Immune Response.	Fernanda Rosa, Ashok K Sharma, Manoj Gurung, David Casero, Katelin Matazel, Lars Bode, Christy Simecka, Ahmed A Elolimy, Patricia Tripp, Christopher Randolph, Timothy W Hand, Keith D Williams, Tanya LeRoith, Laxmi Yeruva	Frontiers In Immunology	2022-06-29	Abstract
Phage Cocktails Constrain the Growth of .	Stephen Wandro, Pooja Ghatbale, Hedieh Attai, Clark Hendrickson, Cyril Samillano, Joy Suh, Sage J B Dunham, David T Pride, Katrine Whiteson	MSystems	2022-06-28	Abstract
Context-aware deconvolution of cell-cell communication with Tensor-cell2cell.	Erick Armingol, Hratch M Baghdassarian, Cameron Martino, Araceli Perez-Lopez, Caitlin Aamodt, Rob Knight, Nathan E Lewis	Nature Communications	2022-06-27	Abstract
Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity.	Amitesh Anand, Arjun Patel, Ke Chen, Connor A Olson, Patrick V Phaneuf, Cameron Lamoureux, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O Palsson	Nature Communications	2022-06-27	Abstract
Heterologous Expression in of the Columbamide Pathway from the Cyanobacterium and Production of New Analogs.	Arnaud Taton, Sebastian Rohrer, Brienna Diaz, Raphael Reher, Andres Mauricio Caraballo Rodriguez, Marsha L Pierce, Pieter C Dorrestein, Lena Gerwick, William H Gerwick, James W Golden	ACS Chemical Biology	2022-06-27	Abstract
The molecular impact of life in an indoor environment.	Alexander A Aksenov, Rodolfo A Salido, Alexey V Melnik, Caitriona Brennan, Asker Brejnrod, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, Franck Lejzerowicz, Delphine K Farmer, Marina E Vance, Rob Knight, Pieter C Dorrestein	Science Advances	2022-06-24	Abstract
Immunological memory to SARS-CoV-2 infection and COVID-19 vaccines.	Alessandro Sette, Shane Crotty	Immunological Reviews	2022-06-22	Abstract
An M protein coiled coil unfurls and exposes its hydrophobic core to capture LL-37.	Piotr Kolesinski, Kuei-Chen Wang, Yujiro Hirose, Victor Nizet, Partho Ghosh	ELife	2022-06-21	Abstract
Monoclonal antibody treatment drives rapid culture conversion in SARS-CoV-2 infection.	Julie Boucau, Kara W Chew, Manish C Choudhary, Rinki Deo, James Regan, James P Flynn, Charles R Crain, Michael D Hughes, Justin Ritz, Carlee Moser, Joan A Dragavon, Arzhang C Javan, Ajay Nirula, Paul Klekotka, Alexander L Greninger, Robert W Coombs, William A Fischer, Eric S Daar, David A Wohl, Joseph J Eron, Judith S Currier, Davey M Smith, , Jonathan Z Li, Amy K Barczak,	Cell Reports. Medicine	2022-06-20	Abstract
Contribution of Streptococcus pyogenes M87 protein to innate immune resistance and virulence.	Yujiro Hirose, Piotr Kolesinski, Masanobu Hiraoka, Satoshi Uchiyama, Raymond H Zurich, Monika Kumaraswamy, Elisabet Bjanes, Partho Ghosh, Shigetada Kawabata, Victor Nizet	Microbial Pathogenesis	2022-06-17	Abstract
A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities.	Justin P Shaffer, Carolina S Carpenter, Cameron Martino, Rodolfo A Salido, Jeremiah J Minich, MacKenzie Bryant, Karenina Sanders, Tara Schwartz, Gregory Humphrey, Austin D Swafford, Rob Knight	BioTechniques	2022-06-17	Abstract
Single-cell characterization of step-wise acquisition of carboplatin resistance in ovarian cancer.	Alexander T Wenzel, Devora Champa, Hrishi Venkatesh, Si Sun, Cheng-Yu Tsai, Jill P Mesirov, Jack D Bui, Stephen B Howell, Olivier Harismendy	NPJ Systems Biology And Applications	2022-06-17	Abstract
Characterizing genetic transmission networks among newly diagnosed HIV-1 infected individuals in eastern China: 2012-2016.	Xiaobei Ding, Antoine Chaillon, Xiaohong Pan, Jiafeng Zhang, Ping Zhong, Lin He, Wanjun Chen, Qin Fan, Jun Jiang, Mingyu Luo, Yan Xia, Zhihong Guo, Davey M Smith	PloS One	2022-06-16	Abstract
Small-Molecule Thioesters as SARS-CoV-2 Main Protease Inhibitors: Enzyme Inhibition, Structure-Activity Relationships, Antiviral Activity, and X-ray Structure Determination.	Thanigaimalai Pillaiyar, Philipp Flury, Nadine Krüger, Haixia Su, Laura Schäkel, Elany Barbosa Da Silva, Olga Eppler, Thales Kronenberger, Tianqing Nie, Stephanie Luedtke, Cheila Rocha, Katharina Sylvester, Marvin R I Petry, James H McKerrow, Antti Poso, Stefan Pöhlmann, Michael Gütschow, Anthony J O'Donoghue, Yechun Xu, Christa E Müller, Stefan A Laufer	Journal Of Medicinal Chemistry	2022-06-16	Abstract
Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings.	Victor J Cantú, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Karenina Sanders, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Evelyn S Crescini, Peter De Hoff, Emily Eisner, Abbas Hakim, Bhavika Kapadia, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Shashank Sathe, Phoebe Seaver, Elizabeth W Smoot, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight	MSystems	2022-06-15	Abstract
Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings.	Victor J Cantú, Karenina Sanders, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Peter De Hoff, Emily Eisner, Abbas Hakim, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Ashley Plascencia, Shashank Sathe, Elizabeth W Smoot, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight	MSystems	2022-06-15	Abstract
Potential Immune-Microbiome Interactions in Breast Cancer May Advance Treatment: What's Holding Us Back?	Austin D Swafford, Soni Khandelwal, Shrikant Bhute	Critical Reviews In Immunology	2022-06-13	Abstract
Discovery of Triple Inhibitors of Both SARS-CoV-2 Proteases and Human Cathepsin L.	Ittipat Meewan, Jacob Kattoula, Julius Y Kattoula, Danielle Skinner, Pavla Fajtová, Miriam A Giardini, Brendon Woodworth, James H McKerrow, Jair Lage de Siqueira-Neto, Anthony J O'Donoghue, Ruben Abagyan	Pharmaceuticals (Basel, Switzerland)	2022-06-13	Abstract
Baseline microbiome and metabolome are associated with response to ITIS diet in an exploratory trial in patients with rheumatoid arthritis.	Roxana Coras, Cameron Martino, Julia M Gauglitz, Francesca Cedola, Anupriya Tripathi, Alan K Jarmusch, Maram Alharthi, Marta Fernandez-Bustamante, Meritxell Agustin-Perez, Abha Singh, Soo-In Choi, Tania Rivera, Katherine Nguyen, Tatyana Shekhtman, Tiffany Holt, Susan Lee, Shahrokh Golshan, Pieter C Dorrestein, Rob Knight, Monica Guma	Clinical And Translational Medicine	2022-06-13	Abstract
Diurnal and eating-associated microbial patterns revealed via high-frequency saliva sampling.	Yichen Hu, Amnon Amir, Xiaochang Huang, Yan Li, Shi Huang, Elaine Wolfe, Sophie Weiss, Rob Knight, Zhenjiang Zech Xu	Genome Research	2022-06-10	Abstract
Letter: non-invasive prediction models to exclude cirrhosis in NAFLD-not everyone fits the mould. Authors' reply.	Danielle Brandman, Marie Boyle, Stuart McPherson, Mark L Van Natta, Arun J Sanyal, Kris Kowdley, Brent Neuschwander-Tetri, Naga Chalasani, Manal F Abdelmalek, Norah A Terrault, Art McCullough, Ricki Bettencourt, Cyrielle Caussy, David E Kleiner, Cynthia Behling, James Tonascia, Quentin M Anstee, Rohit Loomba	Alimentary Pharmacology & Therapeutics	2022-06-10	Abstract
Active genetics comes alive: Exploring the broad applications of CRISPR-based selfish genetic elements (or gene-drives): Exploring the broad applications of CRISPR-based selfish genetic elements (or gene-drives).	Valentino M Gantz, Ethan Bier	BioEssays : News And Reviews In Molecular, Cellular And Developmental Biology	2022-06-09	Abstract
Binding of the SARS-CoV-2 envelope E protein to human BRD4 is essential for infection.	Kendra R Vann, Arpan Acharya, Suk Min Jang, Catherine Lachance, Mohamad Zandian, Tina A Holt, Audrey L Smith, Kabita Pandey, Donald L Durden, Dalia El-Gamal, Jacques Côté, Siddappa N Byrareddy, Tatiana G Kutateladze	Structure (London, England : 1993)	2022-06-09	Abstract
The Urobiomes of Adult Women With Various Lower Urinary Tract Symptoms Status Differ: A Re-Analysis.	Cara Joyce, Thomas Halverson, Caroline Gonzalez, Linda Brubaker, Alan J Wolfe	Frontiers In Cellular And Infection Microbiology	2022-06-09	Abstract
Risk assessment with gut microbiome and metabolite markers in NAFLD development.	Howell Leung, Xiaoxue Long, Yueqiong Ni, Lingling Qian, Emmanouil Nychas, Sara Leal Siliceo, Dennis Pohl, Kati Hanhineva, Yan Liu, Aimin Xu, Henrik B Nielsen, Eugeni Belda, Karine Clément, Rohit Loomba, Huating Li, Weiping Jia, Gianni Panagiotou	Science Translational Medicine	2022-06-08	Abstract
Solithromycin in Children and Adolescents With Community-acquired Bacterial Pneumonia.	Jason E Lang, Christoph P Hornik, Carrie Elliott, Adam Silverstein, Chi Hornik, Amira Al-Uzri, Miroslava Bosheva, John S Bradley, Charissa Fay Corazon Borja-Tabora, David Di John, Ana Mendez Echevarria, Jessica E Ericson, David Friedel, Ferenc Gonczi, Marie Grace Dawn Isidro, Laura P James, Krisztina Kalocsai, Ioannis Koutroulis, Istvan Laki, Anna Lisa T Ong-Lim, Marta Nad, Gabor Simon, Salma Syed, Eva Szabo, Daniel K Benjamin, Michael Cohen-Wolkowiez,	The Pediatric Infectious Disease Journal	2022-06-07	Abstract
Correlates of protection against SARS-CoV-2 infection and COVID-19 disease.	David Goldblatt, Galit Alter, Shane Crotty, Stanley A Plotkin	Immunological Reviews	2022-06-05	Abstract
The oral microbiome and breast cancer and non-malignant breast disease, and its relationship with the fecal microbiome in the Ghana Breast Health Study.	Zeni Wu, Doratha A Byrd, Yunhu Wan, Daniel Ansong, Joe-Nat Clegg-Lamptey, Beatrice Wiafe-Addai, Lawrence Edusei, Ernest Adjei, Nicholas Titiloye, Florence Dedey, Francis Aitpillah, Joseph Oppong, Verna Vanderpuye, Ernest Osei-Bonsu, Casey L Dagnall, Kristine Jones, Amy Hutchinson, Belynda D Hicks, Thomas U Ahearn, Jianxin Shi, Rob Knight, Richard Biritwum, Joel Yarney, Seth Wiafe, Baffour Awuah, Kofi Nyarko, Jonine D Figueroa, Rashmi Sinha, Montserrat Garcia-Closas, Louise A Brinton, Emily Vogtmann	International Journal Of Cancer	2022-06-03	Abstract
Changing global epidemiology of liver cancer from 2010 to 2019: NASH is the fastest growing cause of liver cancer.	Daniel Q Huang, Amit G Singal, Yuko Kono, Darren J H Tan, Hashem B El-Serag, Rohit Loomba	Cell Metabolism	2022-06-03	Abstract
Synchrony and idiosyncrasy in the gut microbiome of wild baboons.	Johannes R Björk, Mauna R Dasari, Kim Roche, Laura Grieneisen, Trevor J Gould, Jean-Christophe Grenier, Vania Yotova, Neil Gottel, David Jansen, Laurence R Gesquiere, Jacob B Gordon, Niki H Learn, Tim L Wango, Raphael S Mututua, J Kinyua Warutere, Long'ida Siodi, Sayan Mukherjee, Luis B Barreiro, Susan C Alberts, Jack A Gilbert, Jenny Tung, Ran Blekhman, Elizabeth A Archie	Nature Ecology & Evolution	2022-06-02	Abstract
Targeted isolation of diverse human protective broadly neutralizing antibodies against SARS-like viruses.	Wan-Ting He, Rami Musharrafieh, Ge Song, Katharina Dueker, Longping V Tse, David R Martinez, Alexandra Schäfer, Sean Callaghan, Peter Yong, Nathan Beutler, Jonathan L Torres, Reid M Volk, Panpan Zhou, Meng Yuan, Hejun Liu, Fabio Anzanello, Tazio Capozzola, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, Ian A Wilson, Yana Safonova, Andrew B Ward, Thomas F Rogers, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees Andrabi	Nature Immunology	2022-06-02	Abstract
Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention.	Stephanie B Orchanian, Julia M Gauglitz, Stephen Wandro, Kelly C Weldon, Megan Doty, Kristina Stillwell, Shalisa Hansen, Lingjing Jiang, Fernando Vargas, Kyung E Rhee, Julie C Lumeng, Pieter C Dorrestein, Rob Knight, Jae H Kim, Se Jin Song, Austin D Swafford	Advanced Biology	2022-06-01	Abstract
Epidemiological and Clinical Features of Kawasaki Disease During the COVID-19 Pandemic in the United States.	Jennifer A Burney, Samantha C Roberts, Laurel L DeHaan, Chisato Shimizu, Emelia V Bainto, Jane W Newburger, Samuel Dominguez, Pei-Ni Jone, Preeti Jaggi, Jacqueline R Szmuszkovicz, Anne H Rowley, Nichole Samuy, Paul Scalici, Adriana H Tremoulet, Daniel R Cayan, Jane C Burns,	JAMA Network Open	2022-06-01	Abstract
Risk of Hepatocellular Carcinoma With Tenofovir vs Entecavir Treatment for Chronic Hepatitis B Virus: A Reconstructed Individual Patient Data Meta-analysis.	Darren Jun Hao Tan, Cheng Han Ng, Phoebe Wen Lin Tay, Nicholas Syn, Mark D Muthiah, Wen Hui Lim, Ansel Shao Pin Tang, Kai En Lim, Grace En Hui Lim, Nobuharu Tamaki, Beom Kyung Kim, Margaret Li Peng Teng, James Fung, Rohit Loomba, Mindie H Nguyen, Daniel Q Huang	JAMA Network Open	2022-06-01	Abstract
Optimizing UniFrac with OpenACC Yields Greater Than One Thousand Times Speed Increase.	Igor Sfiligoi, George Armstrong, Antonio Gonzalez, Daniel McDonald, Rob Knight	MSystems	2022-05-31	Abstract
Bacteriophage-Mediated Perturbation of Defined Bacterial Communities in an Model of the Human Gut.	Hedieh Attai, Jacob Wilde, Roland Liu, Jessica Chopyk, Andrew G Garcia, Emma Allen-Vercoe, David Pride	Microbiology Spectrum	2022-05-31	Abstract
Cross-reactive immunity against the SARS-CoV-2 Omicron variant is low in pediatric patients with prior COVID-19 or MIS-C.	Juanjie Tang, Tanya Novak, Julian Hecker, Gabrielle Grubbs, Fatema Tuz Zahra, Lorenza Bellusci, Sara Pourhashemi, Janet Chou, Kristin Moffitt, Natasha B Halasa, Stephanie P Schwartz, Tracie C Walker, Keiko M Tarquinio, Matt S Zinter, Mary A Staat, Shira J Gertz, Natalie Z Cvijanovich, Jennifer E Schuster, Laura L Loftis, Bria M Coates, Elizabeth H Mack, Katherine Irby, Julie C Fitzgerald, Courtney M Rowan, Michele Kong, Heidi R Flori, Aline B Maddux, Steven L Shein, Hillary Crandall, Janet R Hume, Charlotte V Hobbs, Adriana H Tremoulet, Chisato Shimizu, Jane C Burns, Sabrina R Chen, Hye Kyung Moon, Christoph Lange, Adrienne G Randolph, Surender Khurana	Nature Communications	2022-05-27	Abstract
Fueling the fire in the gut.	Chia-Hao Lin, Li-Fan Lu	The Journal Of Experimental Medicine	2022-05-27	Abstract
Humoral and cellular immune memory to four COVID-19 vaccines.	Zeli Zhang, Jose Mateus, Camila H Coelho, Jennifer M Dan, Carolyn Rydyznski Moderbacher, Rosa Isela Gálvez, Fernanda H Cortes, Alba Grifoni, Alison Tarke, James Chang, E Alexandar Escarrega, Christina Kim, Benjamin Goodwin, Nathaniel I Bloom, April Frazier, Daniela Weiskopf, Alessandro Sette, Shane Crotty	Cell	2022-05-27	Abstract
What were the historical reasons for the resistance to recognizing airborne transmission during the COVID-19 pandemic?	Jose L Jimenez, Linsey C Marr, Katherine Randall, Edward Thomas Ewing, Zeynep Tufekci, Trish Greenhalgh, Raymond Tellier, Julian W Tang, Yuguo Li, Lidia Morawska, Jonathan Mesiano-Crookston, David Fisman, Orla Hegarty, Stephanie J Dancer, Philomena M Bluyssen, Giorgio Buonanno, Marcel G L C Loomans, William P Bahnfleth, Maosheng Yao, Chandra Sekhar, Pawel Wargocki, Arsen K Melikov, Kimberly A Prather	Indoor Air	2022-05-25	Abstract
Maternal diet is associated with human milk oligosaccharide profile.	Marta Selma-Royo, Sonia González, Miguel Gueimonde, Melinda Chang, Annalee Fürst, Cecilia Martínez-Costa, Lars Bode, Maria Carmen Collado	Molecular Nutrition & Food Research	2022-05-25	Abstract
The Ubiquitous Human Skin Commensal Staphylococcus hominis Protects against Opportunistic Pathogens.	Morgan M Severn, Michael R Williams, Ali Shahbandi, Zoie L Bunch, Laurie M Lyon, Amber Nguyen, Livia S Zaramela, Daniel A Todd, Karsten Zengler, Nadja B Cech, Richard L Gallo, Alexander R Horswill	MBio	2022-05-24	Abstract
Demographic and clinical characteristics associated with variations in antibody response to BNT162b2 COVID-19 vaccination among healthcare workers at an academic medical centre: a longitudinal cohort analysis.	Joseph E Ebinger, Sandy Joung, Yunxian Liu, Min Wu, Brittany Weber, Brian Claggett, Patrick G Botting, Nancy Sun, Matthew Driver, Yu Hung Kao, Briana Khuu, Timothy Wynter, Trevor-Trung Nguyen, Mona Alotaibi, John C Prostko, Edwin C Frias, James L Stewart, Helen S Goodridge, Peter Chen, Stanley C Jordan, Mohit Jain, Sonia Sharma, Justyna Fert-Bober, Jennifer E Van Eyk, Margo B Minissian, Moshe Arditi, Gil Y Melmed, Jonathan G Braun, Dermot P B McGovern, Susan Cheng, Kimia Sobhani	BMJ Open	2022-05-24	Abstract
A Prebiotic Diet Alters the Fecal Microbiome and Improves Sleep in Response to Sleep Disruption in Rats.	Samuel J Bowers, Keith C Summa, Robert S Thompson, Antonio González, Fernando Vargas, Christopher Olker, Peng Jiang, Christopher A Lowry, Pieter C Dorrestein, Rob Knight, Kenneth P Wright, Monika Fleshner, Fred W Turek, Martha H Vitaterna	Frontiers In Neuroscience	2022-05-24	Abstract
Fine scale transitions of the microbiota and metabolome along the gastrointestinal tract of herbivorous fishes.	Wesley J Sparagon, Emily C Gentry, Jeremiah J Minich, Lisa Vollbrecht, Lieve M L Laurens, Eric E Allen, Neil A Sims, Pieter C Dorrestein, Linda Wegley Kelly, Craig E Nelson	Animal Microbiome	2022-05-23	Abstract
Ancient plant-like terpene biosynthesis in corals.	Immo Burkhardt, Tristan de Rond, Percival Yang-Ting Chen, Bradley S Moore	Nature Chemical Biology	2022-05-23	Abstract
Complex and unexpected outcomes of antibiotic therapy against a polymicrobial infection.	Lydia-Ann J Ghuneim, Ruma Raghuvanshi, Kerri A Neugebauer, Douglas V Guzior, Martin H Christian, Bella Schena, Jeremiah M Feiner, Alicia Castillo-Bahena, Jenna Mielke, Marc McClelland, Douglas Conrad, Isaac Klapper, Tianyu Zhang, Robert A Quinn	The ISME Journal	2022-05-21	Abstract
Changes in the gut microbiome associated with liver stiffness improvement in nonalcoholic steatohepatitis.	Suzanne R Sharpton, Ondrej Podlaha, Jen-Chieh Chuang, Yevgeniy Gindin, Robert P Myers, Rohit Loomba	Therapeutic Advances In Gastroenterology	2022-05-18	Abstract
Biosynthesis of Guanitoxin Enables Global Environmental Detection in Freshwater Cyanobacteria.	Stella T Lima, Timothy R Fallon, Jennifer L Cordoza, Jonathan R Chekan, Endrews Delbaje, Austin R Hopiavuori, Danillo O Alvarenga, Steffaney M Wood, Hanna Luhavaya, Jackson T Baumgartner, Felipe A Dörr, Augusto Etchegaray, Ernani Pinto, Shaun M K McKinnie, Marli F Fiore, Bradley S Moore	Journal Of The American Chemical Society	2022-05-18	Abstract
SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with sp.	Victor J Cantú, Rodolfo A Salido, Shi Huang, Gibraan Rahman, Rebecca Tsai, Holly Valentine, Celestine G Magallanes, Stefan Aigner, Nathan A Baer, Tom Barber, Pedro Belda-Ferre, Maryann Betty, MacKenzie Bryant, Martín Casas Maya, Anelizze Castro-Martínez, Marisol Chacón, Willi Cheung, Evelyn S Crescini, Peter De Hoff, Emily Eisner, Sawyer Farmer, Abbas Hakim, Laura Kohn, Alma L Lastrella, Elijah S Lawrence, Sydney C Morgan, Toan T Ngo, Alhakam Nouri, Ashley Plascencia, Christopher A Ruiz, Shashank Sathe, Phoebe Seaver, Tara Shwartz, Elizabeth W Smoot, R Tyler Ostrander, Thomas Valles, Gene W Yeo, Louise C Laurent, Rebecca Fielding-Miller, Rob Knight	MSystems	2022-05-16	Abstract
Nitrite Generating and Depleting Capacity of the Oral Microbiome and Cardiometabolic Risk: Results from ORIGINS.	Charlene E Goh, Bruno Bohn, Clarisse Marotz, Rebecca Molinsky, Sumith Roy, Bruce J Paster, Ching-Yuan Chen, Michael Rosenbaum, Melana Yuzefpolskaya, Paolo C Colombo, Moïse Desvarieux, Panos N Papapanou, David R Jacobs, Rob Knight, Ryan T Demmer	Journal Of The American Heart Association	2022-05-16	Abstract
An Artificial Intelligence-guided signature reveals the shared host immune response in MIS-C and Kawasaki disease.	Pradipta Ghosh, Gajanan D Katkar, Chisato Shimizu, Jihoon Kim, Soni Khandelwal, Adriana H Tremoulet, John T Kanegaye, , Joseph Bocchini, Soumita Das, Jane C Burns, Debashis Sahoo	Nature Communications	2022-05-16	Abstract
Case Series of Successful Intravenous Immunoglobulin (IVIG) Treatment in 4 Pregnant Patients with Severe COVID-19-Induced Hypoxia.	Matthew Geriak, Dominic McGrosso, David J Gonzalez, Matthew Dehner, George Sakoulas	The American Journal Of Case Reports	2022-05-14	Abstract
SARS-CoV-2 Seroconversion in an Adult Horse with Direct Contact to a COVID-19 Individual.	Nicola Pusterla, Antoine Chaillon, Caroline Ignacio, Davey M Smith, Samantha Barnum, Kaila O Y Lawton, Greg Smith, Bradley Pickering	Viruses	2022-05-14	Abstract
Changes in Gut Microbiome Composition with Healthy Aging in Humans: Links to Vascular Endothelial Function.	Nathan Greenberg, Marissa L Burnsed-Torres, Antonio Gonzalez, Abigail G Casso, Kara L Lubieniecki, Brian P Ziemba, Matthew J Rossman, Emily C Adam, Michel Chonchol, Kevin P Davy, Rob Knight, Douglas R Seals, Vienna E Brunt	FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology	2022-05-13	Abstract
Evaluation of Small Molecule Inhibitors of Pseudomonas Virulence factor LasB as Non-Traditional Immunotherapeutics.	Sophia R Chou, Doris L LaRock, Joshua Sun, Victor Nizet, Julia K Bohannon, Christopher N LaRock	FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology	2022-05-13	Abstract
Insights from C. elegans into Microsporidia Biology and Host-Pathogen Relationships.	Eillen Tecle, Emily R Troemel	Experientia Supplementum (2012)	2022-05-11	Abstract
Variation in Survival and Gut Microbiome Composition of Hatchery-Grown Native Oysters at Various Locations within the Puget Sound.	Emily Kunselman, Jeremiah J Minich, Micah Horwith, Jack A Gilbert, Eric E Allen	Microbiology Spectrum	2022-05-10	Abstract
The Impact of Exclusive Enteral Nutrition on the Gut Microbiome of Children with Medical Complexity.	Julia Beauchamp-Walters, Gajender Aleti, Lourdes Herrera, Justine Debelius, Natalie Lima, Pritha Dalal, Suzi Hong, Rob Knight, Kyung E Rhee	JPEN. Journal Of Parenteral And Enteral Nutrition	2022-05-08	Abstract
Clinical Features of Patients Hospitalized for All Routes of Anthrax, 1880-2018: A Systematic Review.	Katherine Hendricks, Marissa K Person, John S Bradley, Thitipong Mongkolrattanothai, Nathaniel Hupert, Peter Eichacker, Arthur M Friedlander, William A Bower	Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America	2022-05-06	Abstract
Cerebrospinal Fluid Shunt Infections: A Multicenter Pediatric Study.	Alastair McAlpine, Joan L Robinson, Michelle Barton, Archana Balamohan, H Dele Davies, Gwenn Skar, Marie-Astrid Lefebvre, Ahmed Almadani, Dolores Freire, Nicole Le Saux, Jennifer Bowes, Jocelyn A Srigley, Patrick Passarelli, John Bradley, Sarah Khan, Rupeena Purewal, Isabelle Viel-Thériault, Adrianna Ranger, Michael T Hawkes,	The Pediatric Infectious Disease Journal	2022-05-06	Abstract
Zebrafish: an underutilized tool for discovery in host-microbe interactions.	Alexandra Stream, Cressida A Madigan	Trends In Immunology	2022-05-05	Abstract
A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli.	Irina A Rodionova, Ye Gao, Jonathan Monk, Ying Hefner, Nicholas Wong, Richard Szubin, Hyun Gyu Lim, Dmitry A Rodionov, Zhongge Zhang, Milton H Saier, Bernhard O Palsson	Scientific Reports	2022-05-04	Abstract
Subcellular organization of viral particles during maturation of nucleus-forming jumbo phage.	Vorrapon Chaikeeratisak, Kanika Khanna, Katrina T Nguyen, MacKennon E Egan, Eray Enustun, Emily Armbruster, Jina Lee, Kit Pogliano, Elizabeth Villa, Joe Pogliano	Science Advances	2022-05-04	Abstract
Author Correction: Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly.	Mahul Chakraborty, Arunachalam Ramaiah, Adriana Adolfi, Paige Halas, Bhagyashree Kaduskar, Luna Thanh Ngo, Suvratha Jayaprasad, Kiran Paul, Saurabh Whadgar, Subhashini Srinivasan, Suresh Subramani, Ethan Bier, Anthony A James, J J Emerson	BMC Biology	2022-05-02	Abstract
Transcription Factor 4 loss-of-function is associated with deficits in progenitor proliferation and cortical neuron content.	Fabio Papes, Antonio P Camargo, Janaina S de Souza, Vinicius M A Carvalho, Ryan A Szeto, Erin LaMontagne, José R Teixeira, Simoni H Avansini, Sandra M Sánchez-Sánchez, Thiago S Nakahara, Carolina N Santo, Wei Wu, Hang Yao, Barbara M P Araújo, Paulo E N F Velho, Gabriel G Haddad, Alysson R Muotri	Nature Communications	2022-05-02	Abstract
Localized electrical stimulation triggers cell-type-specific proliferation in biofilms.	Colin J Comerci, Alan L Gillman, Leticia Galera-Laporta, Edgar Gutierrez, Alex Groisman, Joseph W Larkin, Jordi Garcia-Ojalvo, Gürol M Süel	Cell Systems	2022-05-02	Abstract
Blockade of organic anion transport in humans after treatment with the drug probenecid leads to major metabolic alterations in plasma and urine.	Jeffry C Granados, Vibha Bhatnagar, Sanjay K Nigam	Clinical Pharmacology And Therapeutics	2022-05-01	Abstract
DEPP: Deep Learning Enables Extending Species Trees using Single Genes.	Yueyu Jiang, Metin Balaban, Qiyun Zhu, Siavash Mirarab	Systematic Biology	2022-04-29	Abstract
Outcomes and risk factors of death among hospitalized children and adolescents with obesity and COVID-19 in Brazil: An analysis of a nationwide database.	Ana Cristina Simões E Silva, Mariana A Vasconcelos, Enrico A Colosimo, Ana Carmen Q Mendonça, Hercílio Martelli-Júnior, Ludmila R Silva, Maria Christina L Oliveira, Clara C Pinhati, Robert H Mak, Eduardo A Oliveira	Pediatric Obesity	2022-04-28	Abstract
Effects of 'Healthy' Fecal Microbiota Transplantation against the Deterioration of Depression in Fawn-Hooded Rats.	Bing Hu, Promi Das, Xianglin Lv, Meng Shi, Jiye Aa, Kun Wang, Liping Duan, Jack A Gilbert, Yong Nie, Xiao-Lei Wu	MSystems	2022-04-28	Abstract
Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype.	Cameron Martino, Daniel McDonald, Kalen Cantrell, Amanda Hazel Dilmore, Yoshiki Vázquez-Baeza, Liat Shenhav, Justin P Shaffer, Gibraan Rahman, George Armstrong, Celeste Allaband, Se Jin Song, Rob Knight	MSystems	2022-04-28	Abstract
Associations between maternal obesity and offspring gut microbiome in the first year of life.	Stephanie P Gilley, Meghan L Ruebel, Clark Sims, Ying Zhong, Donald Turner, Renny S Lan, Lindsay M Pack, Brian D Piccolo, Sree V Chintapalli, Ann Abraham, Lars Bode, Aline Andres, Kartik Shankar	Pediatric Obesity	2022-04-27	Abstract
Intestinal homeostasis and inflammation: gut microbiota at the crossroads of pancreas-intestinal barrier axis.	Zhongwei Zhang, Izumi Tanaka, Zhen Pan, Peter B Ernst, Hiroshi Kiyono, Yosuke Kurashima	European Journal Of Immunology	2022-04-27	Abstract
Systems biology approach to functionally assess the pangenome reveals genetic diversity with discriminatory power.	Charles J Norsigian, Heather A Danhof, Colleen K Brand, Firas S Midani, Jared T Broddrick, Tor C Savidge, Robert A Britton, Bernhard O Palsson, Jennifer K Spinler, Jonathan M Monk	Proceedings Of The National Academy Of Sciences Of The United States Of America	2022-04-27	Abstract
Nutrient Gradients Mediate Complex Colony-Level Antibiotic Responses in Structured Microbial Populations.	Mirjana Stevanovic, Thomas Boukéké-Lesplulier, Lukas Hupe, Jeff Hasty, Philip Bittihn, Daniel Schultz	Frontiers In Microbiology	2022-04-27	Abstract
Machine-learning from Pseudomonas putida KT2440 transcriptomes reveals its transcriptional regulatory network.	Hyun Gyu Lim, Kevin Rychel, Anand V Sastry, Gayle J Bentley, Joshua Mueller, Heidi S Schindel, Peter E Larsen, Philip D Laible, Adam M Guss, Wei Niu, Christopher W Johnson, Gregg T Beckham, Adam M Feist, Bernhard O Palsson	Metabolic Engineering	2022-04-27	Abstract
Comparative Genomics of Synechococcus elongatus Explains the Phenotypic Diversity of the Strains.	Marie Adomako, Dustin Ernst, Ryan Simkovsky, Yi-Yun Chao, Jingtong Wang, Mingxu Fang, Christiane Bouchier, Rocio Lopez-Igual, Didier Mazel, Muriel Gugger, Susan S Golden	MBio	2022-04-27	Abstract
FastViFi: Fast and accurate detection of (Hybrid) Viral DNA and RNA.	Sara Javadzadeh, Utkrisht Rajkumar, Nam Nguyen, Shahab Sarmashghi, Jens Luebeck, Jingbo Shang, Vineet Bafna	NAR Genomics And Bioinformatics	2022-04-26	Abstract
Antibiotic Activity Altered by Competitive Interactions Between Two Coral Reef-Associated Bacteria.	Samantha J Mascuch, Alyssa Demko, Samson Viulu, Joape Ginigini, Katy Soapi, Paul Jensen, Julia Kubanek	Microbial Ecology	2022-04-23	Abstract
foodMASST a mass spectrometry search tool for foods and beverages.	Kiana A West, Robin Schmid, Julia M Gauglitz, Mingxun Wang, Pieter C Dorrestein	NPJ Science Of Food	2022-04-20	Abstract
Early microbial markers of periodontal and cardiometabolic diseases in ORIGINS.	Clarisse Marotz, Rebecca Molinsky, Cameron Martino, Bruno Bohn, Sumith Roy, Michael Rosenbaum, Moïse Desvarieux, Melana Yuzefpolskaya, Bruce J Paster, David R Jacobs, Paolo C Colombo, Panos N Papapanou, Rob Knight, Ryan T Demmer	NPJ Biofilms And Microbiomes	2022-04-20	Abstract
The impact of maternal asthma on the preterm infants' gut metabolome and microbiome (MAP study).	Shiyu S Bai-Tong, Megan S Thoemmes, Kelly C Weldon, Diba Motazavi, Jessica Kitsen, Shalisa Hansen, Annalee Furst, Bob Geng, Se Jin Song, Jack A Gilbert, Lars Bode, Pieter C Dorrestein, Rob Knight, Sydney A Leibel, Sandra L Leibel	Scientific Reports	2022-04-19	Abstract
Menopause Is Associated with an Altered Gut Microbiome and Estrobolome, with Implications for Adverse Cardiometabolic Risk in the Hispanic Community Health Study/Study of Latinos.	Brandilyn A Peters, Juan Lin, Qibin Qi, Mykhaylo Usyk, Carmen R Isasi, Yasmin Mossavar-Rahmani, Carol A Derby, Nanette Santoro, Krista M Perreira, Martha L Daviglus, Michelle A Kominiarek, Jianwen Cai, Rob Knight, Robert D Burk, Robert C Kaplan	MSystems	2022-04-13	Abstract
Impact of Clopidogrel on Clinical Outcomes in Patients with Staphylococcus aureus Bacteremia: a National Retrospective Cohort Study.	Aisling R Caffrey, Haley J Appaneal, Kerry L LaPlante, Vrishali V Lopes, Erlinda R Ulloa, Victor Nizet, George Sakoulas	Antimicrobial Agents And Chemotherapy	2022-04-13	Abstract
Symptom improvement with mirabegron treatment is associated with urobiome changes in adult women.	Thomas Halverson, Elizabeth R Mueller, Linda Brubaker, Alan J Wolfe	International Urogynecology Journal	2022-04-12	Abstract
P53 deficiency affects cholesterol esterification to exacerbate hepatocarcinogenesis.	Yahui Zhu, Li Gu, Xi Lin, Xinyi Zhou, Bingjun Lu, Cheng Liu, Yajun Li, Edward V Prochownik, Michael Karin, Fubing Wang, Youjun Li	Hepatology (Baltimore, Md.)	2022-04-10	Abstract
Unlocking capacities of genomics for the COVID-19 response and future pandemics.	Sergey Knyazev, Karishma Chhugani, Varuni Sarwal, Ram Ayyala, Harman Singh, Smruthi Karthikeyan, Dhrithi Deshpande, Pelin Icer Baykal, Zoia Comarova, Angela Lu, Yuri Porozov, Tetyana I Vasylyeva, Joel O Wertheim, Braden T Tierney, Charles Y Chiu, Ren Sun, Aiping Wu, Malak S Abedalthagafi, Victoria M Pak, Shivashankar H Nagaraj, Adam L Smith, Pavel Skums, Bogdan Pasaniuc, Andrey Komissarov, Christopher E Mason, Eric Bortz, Philippe Lemey, Fyodor Kondrashov, Niko Beerenwinkel, Tommy Tsan-Yuk Lam, Nicholas C Wu, Alex Zelikovsky, Rob Knight, Keith A Crandall, Serghei Mangul	Nature Methods	2022-04-08	Abstract
Mapping genomic loci implicates genes and synaptic biology in schizophrenia.	Vassily Trubetskoy, Antonio F Pardiñas, Ting Qi, Georgia Panagiotaropoulou, Swapnil Awasthi, Tim B Bigdeli, Julien Bryois, Chia-Yen Chen, Charlotte A Dennison, Lynsey S Hall, Max Lam, Kyoko Watanabe, Oleksandr Frei, Tian Ge, Janet C Harwood, Frank Koopmans, Sigurdur Magnusson, Alexander L Richards, Julia Sidorenko, Yang Wu, Jian Zeng, Jakob Grove, Minsoo Kim, Zhiqiang Li, Georgios Voloudakis, Wen Zhang, Mark Adams, Ingrid Agartz, Elizabeth G Atkinson, Esben Agerbo, Mariam Al Eissa, Margot Albus, Madeline Alexander, Behrooz Z Alizadeh, Köksal Alptekin, Thomas D Als, Farooq Amin, Volker Arolt, Manuel Arrojo, Lavinia Athanasiu, Maria Helena Azevedo, Silviu A Bacanu, Nicholas J Bass, Martin Begemann, Richard A Belliveau, Judit Bene, Beben Benyamin, Sarah E Bergen, Giuseppe Blasi, Julio Bobes, Stefano Bonassi, Alice Braun, Rodrigo Affonseca Bressan, Evelyn J Bromet, Richard Bruggeman, Peter F Buckley, Randy L Buckner, Jonas Bybjerg-Grauholm, Wiepke Cahn, Murray J Cairns, Monica E Calkins, Vaughan J Carr, David Castle, Stanley V Catts, Kimberley D Chambert, Raymond C K Chan, Boris Chaumette, Wei Cheng, Eric F C Cheung, Siow Ann Chong, David Cohen, Angèle Consoli, Quirino Cordeiro, Javier Costas, Charles Curtis, Michael Davidson, Kenneth L Davis, Lieuwe de Haan, Franziska Degenhardt, Lynn E DeLisi, Ditte Demontis, Faith Dickerson, Dimitris Dikeos, Timothy Dinan, Srdjan Djurovic, Jubao Duan, Giuseppe Ducci, Frank Dudbridge, Johan G Eriksson, Lourdes Fañanás, Stephen V Faraone, Alessia Fiorentino, Andreas Forstner, Josef Frank, Nelson B Freimer, Menachem Fromer, Alessandra Frustaci, Ary Gadelha, Giulio Genovese, Elliot S Gershon, Marianna Giannitelli, Ina Giegling, Paola Giusti-Rodríguez, Stephanie Godard, Jacqueline I Goldstein, Javier González Peñas, Ana González-Pinto, Srihari Gopal, Jacob Gratten, Michael F Green, Tiffany A Greenwood, Olivier Guillin, Sinan Gülöksüz, Raquel E Gur, Ruben C Gur, Blanca Gutiérrez, Eric Hahn, Hakon Hakonarson, Vahram Haroutunian, Annette M Hartmann, Carol Harvey, Caroline Hayward, Frans A Henskens, Stefan Herms, Per Hoffmann, Daniel P Howrigan, Masashi Ikeda, Conrad Iyegbe, Inge Joa, Antonio Julià, Anna K Kähler, Tony Kam-Thong, Yoichiro Kamatani, Sena Karachanak-Yankova, Oussama Kebir, Matthew C Keller, Brian J Kelly, Andrey Khrunin, Sung-Wan Kim, Janis Klovins, Nikolay Kondratiev, Bettina Konte, Julia Kraft, Michiaki Kubo, Vaidutis Kučinskas, Zita Ausrele Kučinskiene, Agung Kusumawardhani, Hana Kuzelova-Ptackova, Stefano Landi, Laura C Lazzeroni, Phil H Lee, Sophie E Legge, Douglas S Lehrer, Rebecca Lencer, Bernard Lerer, Miaoxin Li, Jeffrey Lieberman, Gregory A Light, Svetlana Limborska, Chih-Min Liu, Jouko Lönnqvist, Carmel M Loughland, Jan Lubinski, Jurjen J Luykx, Amy Lynham, Milan Macek, Andrew Mackinnon, Patrik K E Magnusson, Brion S Maher, Wolfgang Maier, Dolores Malaspina, Jacques Mallet, Stephen R Marder, Sara Marsal, Alicia R Martin, Lourdes Martorell, Manuel Mattheisen, Robert W McCarley, Colm McDonald, John J McGrath, Helena Medeiros, Sandra Meier, Bela Melegh, Ingrid Melle, Raquelle I Mesholam-Gately, Andres Metspalu, Patricia T Michie, Lili Milani, Vihra Milanova, Marina Mitjans, Espen Molden, Esther Molina, María Dolores Molto, Valeria Mondelli, Carmen Moreno, Christopher P Morley, Gerard Muntané, Kieran C Murphy, Inez Myin-Germeys, Igor Nenadić, Gerald Nestadt, Liene Nikitina-Zake, Cristiano Noto, Keith H Nuechterlein, Niamh Louise O'Brien, F Anthony O'Neill, Sang-Yun Oh, Ann Olincy, Vanessa Kiyomi Ota, Christos Pantelis, George N Papadimitriou, Mara Parellada, Tiina Paunio, Renata Pellegrino, Sathish Periyasamy, Diana O Perkins, Bruno Pfuhlmann, Olli Pietiläinen, Jonathan Pimm, David Porteous, John Powell, Diego Quattrone, Digby Quested, Allen D Radant, Antonio Rampino, Mark H Rapaport, Anna Rautanen, Abraham Reichenberg, Cheryl Roe, Joshua L Roffman, Julian Roth, Matthias Rothermundt, Bart P F Rutten, Safaa Saker-Delye, Veikko Salomaa, Julio Sanjuan, Marcos Leite Santoro, Adam Savitz, Ulrich Schall, Rodney J Scott, Larry J Seidman, Sally Isabel Sharp, Jianxin Shi, Larry J Siever, Engilbert Sigurdsson, Kang Sim, Nora Skarabis, Petr Slominsky, Hon-Cheong So, Janet L Sobell, Erik Söderman, Helen J Stain, Nils Eiel Steen, Agnes A Steixner-Kumar, Elisabeth Stögmann, William S Stone, Richard E Straub, Fabian Streit, Eric Strengman, T Scott Stroup, Mythily Subramaniam, Catherine A Sugar, Jaana Suvisaari, Dragan M Svrakic, Neal R Swerdlow, Jin P Szatkiewicz, Thi Minh Tam Ta, Atsushi Takahashi, Chikashi Terao, Florence Thibaut, Draga Toncheva, Paul A Tooney, Silvia Torretta, Sarah Tosato, Gian Battista Tura, Bruce I Turetsky, Alp Üçok, Arne Vaaler, Therese van Amelsvoort, Ruud van Winkel, Juha Veijola, John Waddington, Henrik Walter, Anna Waterreus, Bradley T Webb, Mark Weiser, Nigel M Williams, Stephanie H Witt, Brandon K Wormley, Jing Qin Wu, Zhida Xu, Robert Yolken, Clement C Zai, Wei Zhou, Feng Zhu, Fritz Zimprich, Eşref Cem Atbaşoğlu, Muhammad Ayub, Christian Benner, Alessandro Bertolino, Donald W Black, Nicholas J Bray, Gerome Breen, Nancy G Buccola, William F Byerley, Wei J Chen, C Robert Cloninger, Benedicto Crespo-Facorro, Gary Donohoe, Robert Freedman, Cherrie Galletly, Michael J Gandal, Massimo Gennarelli, David M Hougaard, Hai-Gwo Hwu, Assen V Jablensky, Steven A McCarroll, Jennifer L Moran, Ole Mors, Preben B Mortensen, Bertram Müller-Myhsok, Amanda L Neil, Merete Nordentoft, Michele T Pato, Tracey L Petryshen, Matti Pirinen, Ann E Pulver, Thomas G Schulze, Jeremy M Silverman, Jordan W Smoller, Eli A Stahl, Debby W Tsuang, Elisabet Vilella, Shi-Heng Wang, Shuhua Xu, , , , , Rolf Adolfsson, Celso Arango, Bernhard T Baune, Sintia Iole Belangero, Anders D Børglum, David Braff, Elvira Bramon, Joseph D Buxbaum, Dominique Campion, Jorge A Cervilla, Sven Cichon, David A Collier, Aiden Corvin, David Curtis, Marta Di Forti, Enrico Domenici, Hannelore Ehrenreich, Valentina Escott-Price, Tõnu Esko, Ayman H Fanous, Anna Gareeva, Micha Gawlik, Pablo V Gejman, Michael Gill, Stephen J Glatt, Vera Golimbet, Kyung Sue Hong, Christina M Hultman, Steven E Hyman, Nakao Iwata, Erik G Jönsson, René S Kahn, James L Kennedy, Elza Khusnutdinova, George Kirov, James A Knowles, Marie-Odile Krebs, Claudine Laurent-Levinson, Jimmy Lee, Todd Lencz, Douglas F Levinson, Qingqin S Li, Jianjun Liu, Anil K Malhotra, Dheeraj Malhotra, Andrew McIntosh, Andrew McQuillin, Paulo R Menezes, Vera A Morgan, Derek W Morris, Bryan J Mowry, Robin M Murray, Vishwajit Nimgaonkar, Markus M Nöthen, Roel A Ophoff, Sara A Paciga, Aarno Palotie, Carlos N Pato, Shengying Qin, Marcella Rietschel, Brien P Riley, Margarita Rivera, Dan Rujescu, Meram C Saka, Alan R Sanders, Sibylle G Schwab, Alessandro Serretti, Pak C Sham, Yongyong Shi, David St Clair, Hreinn Stefánsson, Kari Stefansson, Ming T Tsuang, Jim van Os, Marquis P Vawter, Daniel R Weinberger, Thomas Werge, Dieter B Wildenauer, Xin Yu, Weihua Yue, Peter A Holmans, Andrew J Pocklington, Panos Roussos, Evangelos Vassos, Matthijs Verhage, Peter M Visscher, Jian Yang, Danielle Posthuma, Ole A Andreassen, Kenneth S Kendler, Michael J Owen, Naomi R Wray, Mark J Daly, Hailiang Huang, Benjamin M Neale, Patrick F Sullivan, Stephan Ripke, James T R Walters, Michael C O'Donovan,	Nature	2022-04-08	Abstract
Sialoglycan binding patterns of bacterial AB toxin B subunits correlate with host range and toxicity, indicating evolution independent of A subunits.	Naazneen Khan, Aniruddha Sasmal, Zahra Khedri, Patrick Secrest, Andrea Verhagen, Saurabh Srivastava, Nissi Varki, Xi Chen, Hai Yu, Travis Beddoe, Adrienne W Paton, James C Paton, Ajit Varki	The Journal Of Biological Chemistry	2022-04-07	Abstract
Microbe Profile: : natural products and the evolution of a unique marine bacterium.	Paul R Jensen	Microbiology (Reading, England)	2022-04-05	Abstract
Involvement of Qa-1/HLA-E-Restricted CD8+ T Cells in Anti-Microbe and Anti-Cancer Immunity as Well as in Immune Regulation.	Huiming Sheng, Suryasarathi Dasgupta, Vipin Chaturvedi Kumar	Critical Reviews In Immunology	2022-04-05	Abstract
Factors associated with COVID-19 vaccine intent among Latino SNAP participants in Southern California.	Vanessa P Scott, Sarah Hiller-Venegas, Kate Edra, Joe Prickitt, Yesenia Esquivel, Blanca Melendrez, Kyung E Rhee	BMC Public Health	2022-04-05	Abstract
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy.	Qiyun Zhu, Shi Huang, Antonio Gonzalez, Imran McGrath, Daniel McDonald, Niina Haiminen, George Armstrong, Yoshiki Vázquez-Baeza, Julian Yu, Justin Kuczynski, Gregory D Sepich-Poore, Austin D Swafford, Promi Das, Justin P Shaffer, Franck Lejzerowicz, Pedro Belda-Ferre, Aki S Havulinna, Guillaume Méric, Teemu Niiranen, Leo Lahti, Veikko Salomaa, Ho-Cheol Kim, Mohit Jain, Michael Inouye, Jack A Gilbert, Rob Knight	MSystems	2022-04-04	Abstract
Intestinal virome in patients with alcohol use disorder and after abstinence.	Cynthia L Hsu, Xinlian Zhang, Lu Jiang, Sonja Lang, Phillipp Hartmann, David Pride, Derrick E Fouts, Peter Stärkel, Bernd Schnabl	Hepatology Communications	2022-04-02	Abstract
Complete genomic and epigenetic maps of human centromeres.	Nicolas Altemose, Glennis A Logsdon, Andrey V Bzikadze, Pragya Sidhwani, Sasha A Langley, Gina V Caldas, Savannah J Hoyt, Lev Uralsky, Fedor D Ryabov, Colin J Shew, Michael E G Sauria, Matthew Borchers, Ariel Gershman, Alla Mikheenko, Valery A Shepelev, Tatiana Dvorkina, Olga Kunyavskaya, Mitchell R Vollger, Arang Rhie, Ann M McCartney, Mobin Asri, Ryan Lorig-Roach, Kishwar Shafin, Julian K Lucas, Sergey Aganezov, Daniel Olson, Leonardo Gomes de Lima, Tamara Potapova, Gabrielle A Hartley, Marina Haukness, Peter Kerpedjiev, Fedor Gusev, Kristof Tigyi, Shelise Brooks, Alice Young, Sergey Nurk, Sergey Koren, Sofie R Salama, Benedict Paten, Evgeny I Rogaev, Aaron Streets, Gary H Karpen, Abby F Dernburg, Beth A Sullivan, Aaron F Straight, Travis J Wheeler, Jennifer L Gerton, Evan E Eichler, Adam M Phillippy, Winston Timp, Megan Y Dennis, Rachel J O'Neill, Justin M Zook, Michael C Schatz, Pavel A Pevzner, Mark Diekhans, Charles H Langley, Ivan A Alexandrov, Karen H Miga	Science (New York, N.Y.)	2022-04-01	Abstract
The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients.	Carlos G Gonzalez, Robert H Mills, Melissa C Kordahi, Marvic Carrillo-Terrazas, Henrry Secaira-Morocho, Christella E Widjaja, Matthew S Tsai, Yash Mittal, Brian A Yee, Fernando Vargas, Kelly Weldon, Julia M Gauglitz, Clara Delaroque, Consuelo Sauceda, Leigh-Ana Rossitto, Gail Ackermann, Gregory Humphrey, Austin D Swafford, Corey A Siegel, Jay C Buckey, Laura E Raffals, Charlotte Sadler, Peter Lindholm, Kathleen M Fisch, Mark Valaseck, Arief Suriawinata, Gene W Yeo, Pradipta Ghosh, John T Chang, Hiutung Chu, Pieter Dorrestein, Qiyun Zhu, Benoit Chassaing, Rob Knight, David J Gonzalez, Parambir S Dulai	Cellular And Molecular Gastroenterology And Hepatology	2022-04-01	Abstract
Preserved SARS-CoV-2 Vaccine Cell-Mediated Immunogenicity in Patients With Inflammatory Bowel Disease on Immune-Modulating Therapies.	Brigid S Boland, Benjamin Goodwin, Zeli Zhang, Nathaniel Bloom, Yu Kato, Jennifer Neill, Helen Le, Tiffani Tysl, Angelina E Collins, Parambir S Dulai, Siddharth Singh, Nghia H Nguyen, Alba Grifoni, Alessandro Sette, Daniela Weiskopf, John T Chang, Jennifer M Dan	Clinical And Translational Gastroenterology	2022-04-01	Abstract
Mistaken MIS-C: A Case Series of Bacterial Enteritis Mimicking MIS-C.	Zephyr D Dworsky, Jordan E Roberts, Mary Beth F Son, Adriana H Tremoulet, Jane W Newburger, Jane C Burns	The Pediatric Infectious Disease Journal	2022-04-01	Abstract
Machine learning from Pseudomonas aeruginosa transcriptomes identifies independently modulated sets of genes associated with known transcriptional regulators.	Akanksha Rajput, Hannah Tsunemoto, Anand V Sastry, Richard Szubin, Kevin Rychel, Joseph Sugie, Joe Pogliano, Bernhard O Palsson	Nucleic Acids Research	2022-03-31	Abstract
The complete sequence of a human genome.	Sergey Nurk, Sergey Koren, Arang Rhie, Mikko Rautiainen, Andrey V Bzikadze, Alla Mikheenko, Mitchell R Vollger, Nicolas Altemose, Lev Uralsky, Ariel Gershman, Sergey Aganezov, Savannah J Hoyt, Mark Diekhans, Glennis A Logsdon, Michael Alonge, Stylianos E Antonarakis, Matthew Borchers, Gerard G Bouffard, Shelise Y Brooks, Gina V Caldas, Nae-Chyun Chen, Haoyu Cheng, Chen-Shan Chin, William Chow, Leonardo G de Lima, Philip C Dishuck, Richard Durbin, Tatiana Dvorkina, Ian T Fiddes, Giulio Formenti, Robert S Fulton, Arkarachai Fungtammasan, Erik Garrison, Patrick G S Grady, Tina A Graves-Lindsay, Ira M Hall, Nancy F Hansen, Gabrielle A Hartley, Marina Haukness, Kerstin Howe, Michael W Hunkapiller, Chirag Jain, Miten Jain, Erich D Jarvis, Peter Kerpedjiev, Melanie Kirsche, Mikhail Kolmogorov, Jonas Korlach, Milinn Kremitzki, Heng Li, Valerie V Maduro, Tobias Marschall, Ann M McCartney, Jennifer McDaniel, Danny E Miller, James C Mullikin, Eugene W Myers, Nathan D Olson, Benedict Paten, Paul Peluso, Pavel A Pevzner, David Porubsky, Tamara Potapova, Evgeny I Rogaev, Jeffrey A Rosenfeld, Steven L Salzberg, Valerie A Schneider, Fritz J Sedlazeck, Kishwar Shafin, Colin J Shew, Alaina Shumate, Ying Sims, Arian F A Smit, Daniela C Soto, Ivan Sović, Jessica M Storer, Aaron Streets, Beth A Sullivan, Françoise Thibaud-Nissen, James Torrance, Justin Wagner, Brian P Walenz, Aaron Wenger, Jonathan M D Wood, Chunlin Xiao, Stephanie M Yan, Alice C Young, Samantha Zarate, Urvashi Surti, Rajiv C McCoy, Megan Y Dennis, Ivan A Alexandrov, Jennifer L Gerton, Rachel J O'Neill, Winston Timp, Justin M Zook, Michael C Schatz, Evan E Eichler, Karen H Miga, Adam M Phillippy	Science (New York, N.Y.)	2022-03-31	Abstract
Obesity alters pathology and treatment response in inflammatory disease.	Sagar P Bapat, Caroline Whitty, Cody T Mowery, Yuqiong Liang, Arum Yoo, Zewen Jiang, Michael C Peters, Ling-Juan Zhang, Ian Vogel, Carmen Zhou, Vinh Q Nguyen, Zhongmei Li, Christina Chang, Wandi S Zhu, Annette T Hastie, Helen He, Xin Ren, Wenli Qiu, Sarah G Gayer, Chang Liu, Eun Jung Choi, Marlys Fassett, Jarish N Cohen, Jamie L Sturgill, Laura E Crotty Alexander, Jae Myoung Suh, Christopher Liddle, Annette R Atkins, Ruth T Yu, Michael Downes, Sihao Liu, Barbara S Nikolajczyk, In-Kyu Lee, Emma Guttman-Yassky, K Mark Ansel, Prescott G Woodruff, John V Fahy, Dean Sheppard, Richard L Gallo, Chun Jimmie Ye, Ronald M Evans, Ye Zheng, Alexander Marson	Nature	2022-03-30	Abstract
Metabolic Profiling of Interspecies Interactions During Sessile Bacterial Cultivation Reveals Growth and Sporulation Induction in in Response to .	Jakob Herschend, Madeleine Ernst, Klaus Koren, Alexey V Melnik, Ricardo R da Silva, Henriette L Røder, Zacharias B V Damholt, Per Hägglund, Birte Svensson, Søren J Sørensen, Michael Kühl, Pieter C Dorrestein, Mette Burmølle	Frontiers In Cellular And Infection Microbiology	2022-03-29	Abstract
Synthetic 3'-UTR valves for optimal metabolic flux control in Escherichia coli.	Donghui Choe, Kangsan Kim, Minjeong Kang, Seung-Goo Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho	Nucleic Acids Research	2022-03-29	Abstract
Risk factors for COVID-19-related mortality in hospitalized children and adolescents with diabetes mellitus: An observational retrospective cohort study.	Eduardo A Oliveira, Robert H Mak, Enrico A Colosimo, Ana Carmen Q Mendonça, Mariana A Vasconcelos, Hercílio Martelli-Júnior, Ludmila R Silva, Maria Christina L Oliveira, Clara C Pinhati, Ana Cristina Simões E Silva	Pediatric Diabetes	2022-03-27	Abstract
The ViReflow pipeline enables user friendly large scale viral consensus genome reconstruction.	Niema Moshiri, Kathleen M Fisch, Amanda Birmingham, Peter DeHoff, Gene W Yeo, Kristen Jepsen, Louise C Laurent, Rob Knight	Scientific Reports	2022-03-24	Abstract
High Sensitivity, Rapid Detection of Virus in High Traffic Environments.	Lauren Waller, Zhilin Guo, Rui Tang, Zunming Zhang, Edward Wang, Jarred Yasuhara-Bell, Louise Laurent, Yu-Hwa Lo	Frontiers In Bioengineering And Biotechnology	2022-03-24	Abstract
Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq.	Sara E Vazquez, Sabrina A Mann, Aaron Bodansky, Andrew F Kung, Zoe Quandt, Elise M N Ferré, Nils Landegren, Daniel Eriksson, Paul Bastard, Shen-Ying Zhang, Jamin Liu, Anthea Mitchell, Caleigh Mandel-Brehm, Brenda Miao, Gavin Sowa, Kelsey Zorn, Alice Y Chan, Chisato Shimizu, Adriana Tremoulet, Kara Lynch, Michael R Wilson, Olle Kampe, Kerry Dobbs, Ottavia M Delmonte, Luigi D Notarangelo, Jane C Burns, Jean-Laurent Casanova, Michail S Lionakis, Troy R Torgerson, Mark S Anderson, Joseph L DeRisi	BioRxiv : The Preprint Server For Biology	2022-03-24	Abstract
Potent Activity of Ertapenem Plus Cefazolin Within Staphylococcal Biofilms: A Contributing Factor in the Treatment of Methicillin-Susceptible Endocarditis.	Jessica Gilbertie, Erlinda R Ulloa, Jennifer C Daiker, Khanh Nguyen, Dan Smelter, Warren Rose, Matthew Geriak, Lauren V Schnabel, Victor Nizet, George Sakoulas	Open Forum Infectious Diseases	2022-03-23	Abstract
Early prediction of incident liver disease using conventional risk factors and gut-microbiome-augmented gradient boosting.	Yang Liu, Guillaume Méric, Aki S Havulinna, Shu Mei Teo, Fredrik Åberg, Matti Ruuskanen, Jon Sanders, Qiyun Zhu, Anupriya Tripathi, Karin Verspoor, Susan Cheng, Mohit Jain, Pekka Jousilahti, Yoshiki Vázquez-Baeza, Rohit Loomba, Leo Lahti, Teemu Niiranen, Veikko Salomaa, Rob Knight, Michael Inouye	Cell Metabolism	2022-03-22	Abstract
Microbiomes of Hadal Fishes across Trench Habitats Contain Similar Taxa and Known Piezophiles.	Jessica M Blanton, Logan M Peoples, Mackenzie E Gerringer, Caroline M Iacuaniello, Natalya D Gallo, Thomas D Linley, Alan J Jamieson, Jeffrey C Drazen, Douglas H Bartlett, Eric E Allen	MSphere	2022-03-21	Abstract
Machine Learning of All Mycobacterium tuberculosis H37Rv RNA-seq Data Reveals a Structured Interplay between Metabolism, Stress Response, and Infection.	Reo Yoo, Kevin Rychel, Saugat Poudel, Tahani Al-Bulushi, Yuan Yuan, Siddharth Chauhan, Cameron Lamoureux, Bernhard O Palsson, Anand Sastry	MSphere	2022-03-21	Abstract
PI3K-α/mTOR/BRD4 inhibitor alone or in combination with other anti-virals blocks replication of SARS-CoV-2 and its variants of concern including Delta and Omicron.	Arpan Acharya, Anup S Pathania, Kabita Pandey, Michellie Thurman, Kendra R Vann, Tatiana G Kutateladze, Kishore B Challagundala, Donald L Durden, Siddappa N Byrareddy	Clinical And Translational Medicine	2022-03-20	Abstract
Correction to: Precision medicine in perinatal depression in light of the human microbiome.	Beatriz Peñalver Bernabé, Pauline M Maki, Shannon M Dowty, Mariana Lauren Cralle Salas, Zainab Shah, Jack A Gilbert	Psychopharmacology	2022-03-18	Abstract
Age-associated impairment of T cell immunity is linked to sex-dimorphic elevation of N-glycan branching.	Haik Mkhikian, Ken L Hayama, Khachik Khachikyan, Carey Li, Raymond W Zhou, Judy Pawling, Suzi Klaus, Phuong Q N Tran, Kim M Ly, Andrew D Gong, Hayk Saryan, Jasper L Hai, David Grigoryan, Philip L Lee, Barbara L Newton, Manuela Raffatellu, James W Dennis, Michael Demetriou	Nature Aging	2022-03-18	Abstract
Global urban environmental change drives adaptation in white clover.	James S Santangelo, Rob W Ness, Beata Cohan, Connor R Fitzpatrick, Simon G Innes, Sophie Koch, Lindsay S Miles, Samreen Munim, Pedro R Peres-Neto, Cindy Prashad, Alex T Tong, Windsor E Aguirre, Philips O Akinwole, Marina Alberti, Jackie Álvarez, Jill T Anderson, Joseph J Anderson, Yoshino Ando, Nigel R Andrew, Fabio Angeoletto, Daniel N Anstett, Julia Anstett, Felipe Aoki-Gonçalves, A Z Andis Arietta, Mary T K Arroyo, Emily J Austen, Fernanda Baena-Díaz, Cory A Barker, Howard A Baylis, Julia M Beliz, Alfonso Benitez-Mora, David Bickford, Gabriela Biedebach, Gwylim S Blackburn, Mannfred M A Boehm, Stephen P Bonser, Dries Bonte, Jesse R Bragger, Cristina Branquinho, Kristien I Brans, Jorge C Bresciano, Peta D Brom, Anna Bucharova, Briana Burt, James F Cahill, Katelyn D Campbell, Elizabeth J Carlen, Diego Carmona, Maria Clara Castellanos, Giada Centenaro, Izan Chalen, Jaime A Chaves, Mariana Chávez-Pesqueira, Xiao-Yong Chen, Angela M Chilton, Kristina M Chomiak, Diego F Cisneros-Heredia, Ibrahim K Cisse, Aimée T Classen, Mattheau S Comerford, Camila Cordoba Fradinger, Hannah Corney, Andrew J Crawford, Kerri M Crawford, Maxime Dahirel, Santiago David, Robert De Haan, Nicholas J Deacon, Clare Dean, Ek Del-Val, Eleftherios K Deligiannis, Derek Denney, Margarete A Dettlaff, Michelle F DiLeo, Yuan-Yuan Ding, Moisés E Domínguez-López, Davide M Dominoni, Savannah L Draud, Karen Dyson, Jacintha Ellers, Carlos I Espinosa, Liliana Essi, Mohsen Falahati-Anbaran, Jéssica C F Falcão, Hayden T Fargo, Mark D E Fellowes, Raina M Fitzpatrick, Leah E Flaherty, Pádraic J Flood, María F Flores, Juan Fornoni, Amy G Foster, Christopher J Frost, Tracy L Fuentes, Justin R Fulkerson, Edeline Gagnon, Frauke Garbsch, Colin J Garroway, Aleeza C Gerstein, Mischa M Giasson, E Binney Girdler, Spyros Gkelis, William Godsoe, Anneke M Golemiec, Mireille Golemiec, César González-Lagos, Amanda J Gorton, Kiyoko M Gotanda, Gustaf Granath, Stephan Greiner, Joanna S Griffiths, Filipa Grilo, Pedro E Gundel, Benjamin Hamilton, Joyce M Hardin, Tianhua He, Stephen B Heard, André F Henriques, Melissa Hernández-Poveda, Molly C Hetherington-Rauth, Sarah J Hill, Dieter F Hochuli, Kathryn A Hodgins, Glen R Hood, Gareth R Hopkins, Katherine A Hovanes, Ava R Howard, Sierra C Hubbard, Carlos N Ibarra-Cerdeña, Carlos Iñiguez-Armijos, Paola Jara-Arancio, Benjamin J M Jarrett, Manon Jeannot, Vania Jiménez-Lobato, Mae Johnson, Oscar Johnson, Philip P Johnson, Reagan Johnson, Matthew P Josephson, Meen Chel Jung, Michael G Just, Aapo Kahilainen, Otto S Kailing, Eunice Kariñho-Betancourt, Regina Karousou, Lauren A Kirn, Anna Kirschbaum, Anna-Liisa Laine, Jalene M LaMontagne, Christian Lampei, Carlos Lara, Erica L Larson, Adrián Lázaro-Lobo, Jennifer H Le, Deleon S Leandro, Christopher Lee, Yunting Lei, Carolina A León, Manuel E Lequerica Tamara, Danica C Levesque, Wan-Jin Liao, Megan Ljubotina, Hannah Locke, Martin T Lockett, Tiffany C Longo, Jeremy T Lundholm, Thomas MacGillavry, Christopher R Mackin, Alex R Mahmoud, Isaac A Manju, Janine Mariën, D Nayeli Martínez, Marina Martínez-Bartolomé, Emily K Meineke, Wendy Mendoza-Arroyo, Thomas J S Merritt, Lila Elizabeth L Merritt, Giuditta Migiani, Emily S Minor, Nora Mitchell, Mitra Mohammadi Bazargani, Angela T Moles, Julia D Monk, Christopher M Moore, Paula A Morales-Morales, Brook T Moyers, Miriam Muñoz-Rojas, Jason Munshi-South, Shannon M Murphy, Maureen M Murúa, Melisa Neila, Ourania Nikolaidis, Iva Njunjić, Peter Nosko, Juan Núñez-Farfán, Takayuki Ohgushi, Kenneth M Olsen, Øystein H Opedal, Cristina Ornelas, Amy L Parachnowitsch, Aaron S Paratore, Angela M Parody-Merino, Juraj Paule, Octávio S Paulo, João Carlos Pena, Vera W Pfeiffer, Pedro Pinho, Anthony Piot, Ilga M Porth, Nicholas Poulos, Adriana Puentes, Jiao Qu, Estela Quintero-Vallejo, Steve M Raciti, Joost A M Raeymaekers, Krista M Raveala, Diana J Rennison, Milton C Ribeiro, Jonathan L Richardson, Gonzalo Rivas-Torres, Benjamin J Rivera, Adam B Roddy, Erika Rodriguez-Muñoz, José Raúl Román, Laura S Rossi, Jennifer K Rowntree, Travis J Ryan, Santiago Salinas, Nathan J Sanders, Luis Y Santiago-Rosario, Amy M Savage, J F Scheepens, Menno Schilthuizen, Adam C Schneider, Tiffany Scholier, Jared L Scott, Summer A Shaheed, Richard P Shefferson, Caralee A Shepard, Jacqui A Shykoff, Georgianna Silveira, Alexis D Smith, Lizet Solis-Gabriel, Antonella Soro, Katie V Spellman, Kaitlin Stack Whitney, Indra Starke-Ottich, Jörg G Stephan, Jessica D Stephens, Justyna Szulc, Marta Szulkin, Ayco J M Tack, Ítalo Tamburrino, Tayler D Tate, Emmanuel Tergemina, Panagiotis Theodorou, Ken A Thompson, Caragh G Threlfall, Robin M Tinghitella, Lilibeth Toledo-Chelala, Xin Tong, Léa Uroy, Shunsuke Utsumi, Martijn L Vandegehuchte, Acer VanWallendael, Paula M Vidal, Susana M Wadgymar, Ai-Ying Wang, Nian Wang, Montana L Warbrick, Kenneth D Whitney, Miriam Wiesmeier, J Tristian Wiles, Jianqiang Wu, Zoe A Xirocostas, Zhaogui Yan, Jiahe Yao, Jeremy B Yoder, Owen Yoshida, Jingxiong Zhang, Zhigang Zhao, Carly D Ziter, Matthew P Zuellig, Rebecca A Zufall, Juan E Zurita, Sharon E Zytynska, Marc T J Johnson	Science (New York, N.Y.)	2022-03-17	Abstract
What If Not All Metabolites from the Uremic Toxin Generating Pathways Are Toxic? A Hypothesis.	Raymond Vanholder, Sanjay K Nigam, Stéphane Burtey, Griet Glorieux	Toxins	2022-03-17	Abstract
Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases.	George Armstrong, Cameron Martino, Justin Morris, Behnam Khaleghi, Jaeyoung Kang, Jeff DeReus, Qiyun Zhu, Daniel Roush, Daniel McDonald, Antonio Gonazlez, Justin P Shaffer, Carolina Carpenter, Mehrbod Estaki, Stephen Wandro, Sean Eilert, Ameen Akel, Justin Eno, Ken Curewitz, Austin D Swafford, Niema Moshiri, Tajana Rosing, Rob Knight	MSystems	2022-03-16	Abstract
Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides.	Gajender Aleti, Jordan N Kohn, Emily A Troyer, Kelly Weldon, Shi Huang, Anupriya Tripathi, Pieter C Dorrestein, Austin D Swafford, Rob Knight, Suzi Hong	BMC Microbiology	2022-03-14	Abstract
Autoantibodies Against Proteins Previously Associated With Autoimmunity in Adult and Pediatric Patients With COVID-19 and Children With MIS-C.	Peter D Burbelo, Riccardo Castagnoli, Chisato Shimizu, Ottavia M Delmonte, Kerry Dobbs, Valentina Discepolo, Andrea Lo Vecchio, Alfredo Guarino, Francesco Licciardi, Ugo Ramenghi, Emma Rey-Jurado, Cecilia Vial, Gian Luigi Marseglia, Amelia Licari, Daniela Montagna, Camillo Rossi, Gina A Montealegre Sanchez, Karyl Barron, Blake M Warner, John A Chiorini, Yazmin Espinosa, Loreani Noguera, Lesia Dropulic, Meng Truong, Dana Gerstbacher, Sayonara Mató, John Kanegaye, Adriana H Tremoulet, , Eli M Eisenstein, Helen C Su, Luisa Imberti, Maria Cecilia Poli, Jane C Burns, Luigi D Notarangelo, Jeffrey I Cohen	Frontiers In Immunology	2022-03-11	Abstract
Structure and Candidate Biosynthetic Gene Cluster of a Manumycin-Type Metabolite from .	Gabriel Castro-Falcón, Kaitlin E Creamer, Alexander B Chase, Min Cheol Kim, Douglas Sweeney, Evgenia Glukhov, William Fenical, Paul R Jensen	Journal Of Natural Products	2022-03-09	Abstract
Cancer's second genome: Microbial cancer diagnostics and redefining clonal evolution as a multispecies process: Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution: Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution.	Gregory D Sepich-Poore, Caitlin Guccione, Lucie Laplane, Thomas Pradeu, Kit Curtius, Rob Knight	BioEssays : News And Reviews In Molecular, Cellular And Developmental Biology	2022-03-06	Abstract
Human Milk Oligosaccharides and Bacterial Profile Modulate Infant Body Composition during Exclusive Breastfeeding.	Ali S Cheema, Zoya Gridneva, Annalee J Furst, Ana S Roman, Michelle L Trevenen, Berwin A Turlach, Ching T Lai, Lisa F Stinson, Lars Bode, Matthew S Payne, Donna T Geddes	International Journal Of Molecular Sciences	2022-03-05	Abstract
Exclusively Breastfed Infant Microbiota Develops over Time and Is Associated with Human Milk Oligosaccharide Intakes.	Ali Sadiq Cheema, Michelle Louise Trevenen, Berwin Ashoka Turlach, Annalee June Furst, Ana Sophia Roman, Lars Bode, Zoya Gridneva, Ching Tat Lai, Lisa Faye Stinson, Matthew Scott Payne, Donna Tracy Geddes	International Journal Of Molecular Sciences	2022-03-03	Abstract
Landscape of HIV neutralization susceptibilities across tissue reservoirs.	Chuangqi Wang, Timothy E Schlub, Wen-Han Yu, C Sabrina Tan, Karl Stefic, Sara Gianella, Davey M Smith, Douglas A Lauffenburger, Antoine Chaillon, Boris Julg	Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America	2022-03-02	Abstract
Detection of COVID-19 using multimodal data from a wearable device: results from the first TemPredict Study.	Ashley E Mason, Frederick M Hecht, Shakti K Davis, Joseph L Natale, Wendy Hartogensis, Natalie Damaso, Kajal T Claypool, Stephan Dilchert, Subhasis Dasgupta, Shweta Purawat, Varun K Viswanath, Amit Klein, Anoushka Chowdhary, Sarah M Fisher, Claudine Anglo, Karena Y Puldon, Danou Veasna, Jenifer G Prather, Leena S Pandya, Lindsey M Fox, Michael Busch, Casey Giordano, Brittany K Mercado, Jining Song, Rafael Jaimes, Brian S Baum, Brian A Telfer, Casandra W Philipson, Paula P Collins, Adam A Rao, Edward J Wang, Rachel H Bandi, Bianca J Choe, Elissa S Epel, Stephen K Epstein, Joanne B Krasnoff, Marco B Lee, Shi-Wen Lee, Gina M Lopez, Arpan Mehta, Laura D Melville, Tiffany S Moon, Lilianne R Mujica-Parodi, Kimberly M Noel, Michael A Orosco, Jesse M Rideout, Janet D Robishaw, Robert M Rodriguez, Kaushal H Shah, Jonathan H Siegal, Amarnath Gupta, Ilkay Altintas, Benjamin L Smarr	Scientific Reports	2022-03-02	Abstract
Immune Response of an Oral Phage Cocktail in a Mouse Model of Ethanol-Induced Liver Disease.	Beatriz Garcia Mendes, Yi Duan, Bernd Schnabl	Viruses	2022-02-27	Abstract
System-Level Analysis of Transcriptional and Translational Regulatory Elements in .	Soonkyu Hwang, Namil Lee, Donghui Choe, Yongjae Lee, Woori Kim, Ji Hun Kim, Gahyeon Kim, Hyeseong Kim, Neung-Ho Ahn, Byoung-Hee Lee, Bernhard O Palsson, Byung-Kwan Cho	Frontiers In Bioengineering And Biotechnology	2022-02-25	Abstract
The Microbiota-Gut-Brain Axis in Alzheimer's Disease: A Review of Taxonomic Alterations and Potential Avenues for Interventions.	Emily R Murray, Mylon Kemp, Tanya T Nguyen	Archives Of Clinical Neuropsychology : The Official Journal Of The National Academy Of Neuropsychologists	2022-02-24	Abstract
Applications and Comparison of Dimensionality Reduction Methods for Microbiome Data.	George Armstrong, Gibraan Rahman, Cameron Martino, Daniel McDonald, Antonio Gonzalez, Gal Mishne, Rob Knight	Frontiers In Bioinformatics	2022-02-24	Abstract
viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data.	Dmitry Antipov, Mikhail Rayko, Mikhail Kolmogorov, Pavel A Pevzner	Genome Biology	2022-02-21	Abstract
Deoxyvasicinone with Anti-Melanogenic Activity from Marine-Derived sp. CNQ-617.	Se-Eun Lee, Min-Ju Kim, Prima F Hillman, Dong-Chan Oh, William Fenical, Sang-Jip Nam, Kyung-Min Lim	Marine Drugs	2022-02-21	Abstract
Viral protein instability enhances host-range evolvability.	Hannah M Strobel, Elijah K Horwitz, Justin R Meyer	PLoS Genetics	2022-02-17	Abstract
Intestinal secretory mechanisms and diarrhea.	Stephen Joseph Keely, Kim E Barrett	American Journal Of Physiology. Gastrointestinal And Liver Physiology	2022-02-16	Abstract
Antimicrobial production by perifollicular dermal preadipocytes is essential to the pathophysiology of acne.	Alan M O'Neill, Marc C Liggins, Jason S Seidman, Tran H Do, Fengwu Li, Kellen J Cavagnero, Tatsuya Dokoshi, Joyce Y Cheng, Faiza Shafiq, Tissa R Hata, Johann E Gudjonsson, Robert L Modlin, Richard L Gallo	Science Translational Medicine	2022-02-16	Abstract
Higher buccal mitochondrial DNA and mitochondrial common deletion number are associated with markers of neurodegeneration and inflammation in cerebrospinal fluid.	Dipesh Solanky, Jerel A Fields, Jennifer E Iudicello, Ronald J Ellis, Donald Franklin, David B Clifford, Benjamin B Gelman, Christina M Marra, Susan Morgello, Leah H Rubin, Igor Grant, Robert K Heaton, Scott L Letendre, Sanjay R Mehta	Journal Of Neurovirology	2022-02-14	Abstract
A gut-derived metabolite alters brain activity and anxiety behaviour in mice.	Brittany D Needham, Masanori Funabashi, Mark D Adame, Zhuo Wang, Joseph C Boktor, Jillian Haney, Wei-Li Wu, Claire Rabut, Mark S Ladinsky, Son-Jong Hwang, Yumei Guo, Qiyun Zhu, Jessica A Griffiths, Rob Knight, Pamela J Bjorkman, Mikhail G Shapiro, Daniel H Geschwind, Daniel P Holschneider, Michael A Fischbach, Sarkis K Mazmanian	Nature	2022-02-14	Abstract
Adaptive laboratory evolution in S. cerevisiae highlights role of transcription factors in fungal xenobiotic resistance.	Sabine Ottilie, Madeline R Luth, Erich Hellemann, Gregory M Goldgof, Eddy Vigil, Prianka Kumar, Andrea L Cheung, Miranda Song, Karla P Godinez-Macias, Krypton Carolino, Jennifer Yang, Gisel Lopez, Matthew Abraham, Maureen Tarsio, Emmanuelle LeBlanc, Luke Whitesell, Jake Schenken, Felicia Gunawan, Reysha Patel, Joshua Smith, Melissa S Love, Roy M Williams, Case W McNamara, William H Gerwick, Trey Ideker, Yo Suzuki, Dyann F Wirth, Amanda K Lukens, Patricia M Kane, Leah E Cowen, Jacob D Durrant, Elizabeth A Winzeler	Communications Biology	2022-02-11	Abstract
From Tryptophan to Toxin: Nature's Convergent Biosynthetic Strategy to Aetokthonotoxin.	Sanjoy Adak, April L Lukowski, Rebecca J B Schäfer, Bradley S Moore	Journal Of The American Chemical Society	2022-02-10	Abstract
Efficient in vitro and in vivo RNA editing via recruitment of endogenous ADARs using circular guide RNAs.	Dhruva Katrekar, James Yen, Yichen Xiang, Anushka Saha, Dario Meluzzi, Yiannis Savva, Prashant Mali	Nature Biotechnology	2022-02-10	Abstract
Machine Learning Predicts Biogeochemistry from Microbial Community Structure in a Complex Model System.	Avishek Dutta, Thomas Goldman, Jeffrey Keating, Ellen Burke, Nicole Williamson, Reinhard Dirmeier, Jeff S Bowman	Microbiology Spectrum	2022-02-09	Abstract
Development of a T cell-based immunodiagnostic system to effectively distinguish SARS-CoV-2 infection and COVID-19 vaccination status.	Esther Dawen Yu, Eric Wang, Emily Garrigan, Benjamin Goodwin, Aaron Sutherland, Alison Tarke, James Chang, Rosa Isela Gálvez, Jose Mateus, Sydney I Ramirez, Stephen A Rawlings, Davey M Smith, Gilberto Filaci, April Frazier, Daniela Weiskopf, Jennifer M Dan, Shane Crotty, Alba Grifoni, Alessandro Sette, Ricardo da Silva Antunes	Cell Host & Microbe	2022-02-08	Abstract
Targeted isolation of panels of diverse human protective broadly neutralizing antibodies against SARS-like viruses.	Wan-Ting He, Rami Musharrafieh, Ge Song, Katharina Dueker, Longping V Tse, David R Martinez, Alexandra Schäfer, Sean Callaghan, Peter Yong, Nathan Beutler, Jonathan L Torres, Reid M Volk, Panpan Zhou, Meng Yuan, Hejuni Liu, Fabio Anzanello, Tazio Capozzola, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, Ian A Wilson, Yana Safonova, Andrew B Ward, Thomas F Rogers, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees Andrabi	BioRxiv : The Preprint Server For Biology	2022-02-08	Abstract
A human antibody reveals a conserved site on beta-coronavirus spike proteins and confers protection against SARS-CoV-2 infection.	Panpan Zhou, Meng Yuan, Ge Song, Nathan Beutler, Namir Shaabani, Deli Huang, Wan-Ting He, Xueyong Zhu, Sean Callaghan, Peter Yong, Fabio Anzanello, Linghang Peng, James Ricketts, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, David Nemazee, John R Teijaro, Thomas F Rogers, Ian A Wilson, Dennis R Burton, Raiees Andrabi	Science Translational Medicine	2022-02-08	Abstract
Regulatory perturbations of ribosome allocation in bacteria reshape the growth proteome with a trade-off in adaptation capacity.	David Hidalgo, César A Martínez-Ortiz, Bernhard O Palsson, José I Jiménez, José Utrilla	IScience	2022-02-07	Abstract
Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Youwen Qin, Aki S Havulinna, Yang Liu, Pekka Jousilahti, Scott C Ritchie, Alex Tokolyi, Jon G Sanders, Liisa Valsta, Marta Brożyńska, Qiyun Zhu, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Rohit Loomba, Susan Cheng, Mohit Jain, Teemu Niiranen, Leo Lahti, Rob Knight, Veikko Salomaa, Michael Inouye, Guillaume Méric	Nature Genetics	2022-02-03	Abstract
A potentially probiotic strain of Enterococcus faecalis from human milk that is avirulent, antibiotic sensitive, and nonbreaching of the gut barrier.	Jasia Anjum, Arsalan Zaidi, Kim Barrett, Muhammad Tariq	Archives Of Microbiology	2022-02-02	Abstract
Flux balance analysis of the ammonia-oxidizing bacterium Nitrosomonas europaea ATCC19718 unravels specific metabolic activities while degrading toxic compounds.	Gabriela Canto-Encalada, Diego Tec-Campos, Juan D Tibocha-Bonilla, Karsten Zengler, Alejandro Zepeda, Cristal Zuñiga	PLoS Computational Biology	2022-02-02	Abstract
Salmonella respiration turns the tables on propionate.	Gregory T Walker, Manuela Raffatellu	Trends In Microbiology	2022-02-02	Abstract
Editorial: Mast Cells: Bridging Host-Microorganism Interactions.	Rommel Chacón-Salinas, Anna Di Nardo, Soman N Abraham	Frontiers In Immunology	2022-01-31	Abstract
Gut Microbiome Composition Is Predictive of Incident Type 2 Diabetes in a Population Cohort of 5,572 Finnish Adults.	Matti O Ruuskanen, Pande P Erawijantari, Aki S Havulinna, Yang Liu, Guillaume Méric, Jaakko Tuomilehto, Michael Inouye, Pekka Jousilahti, Veikko Salomaa, Mohit Jain, Rob Knight, Leo Lahti, Teemu J Niiranen	Diabetes Care	2022-01-31	Abstract
Using All Our Genomes: Blood-based Liquid Biopsies for the Early Detection of Cancer.	Eddie Adams, Gregory D Sepich-Poore, Sandrine Miller-Montgomery, Rob Knight	View (Beijing, China)	2022-01-31	Abstract
Identification of Leucinostatins from sp. as Antiparasitic Agents against .	Jean A Bernatchez, Yun-Seo Kil, Elany Barbosa da Silva, Diane Thomas, Laura-Isobel McCall, Karen L Wendt, Julia M Souza, Jasmin Ackermann, James H McKerrow, Robert H Cichewicz, Jair L Siqueira-Neto	ACS Omega	2022-01-28	Abstract
Leapfrog dynamics in phage-bacteria coevolution revealed by joint analysis of cross-infection phenotypes and whole genome sequencing.	Animesh Gupta, Shengyun Peng, Chung Yin Leung, Joshua M Borin, Sarah J Medina, Joshua S Weitz, Justin R Meyer	Ecology Letters	2022-01-28	Abstract
Accumulation of microbial DNAs promotes to islet inflammation and β cell abnormalities in obesity in mice.	Hong Gao, Zhenlong Luo, Yudong Ji, Kechun Tang, Zhongmou Jin, Crystal Ly, Dorothy D Sears, Sushil Mahata, Wei Ying	Nature Communications	2022-01-28	Abstract
Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity.	Robert H Mills, Parambir S Dulai, Yoshiki Vázquez-Baeza, Consuelo Sauceda, Noëmie Daniel, Romana R Gerner, Lakshmi E Batachari, Mario Malfavon, Qiyun Zhu, Kelly Weldon, Greg Humphrey, Marvic Carrillo-Terrazas, Lindsay DeRight Goldasich, MacKenzie Bryant, Manuela Raffatellu, Robert A Quinn, Andrew T Gewirtz, Benoit Chassaing, Hiutung Chu, William J Sandborn, Pieter C Dorrestein, Rob Knight, David J Gonzalez	Nature Microbiology	2022-01-27	Abstract
Predicting fungal infection rate and severity with skin-associated microbial communities on amphibians.	Melissa Y Chen, Jordan G Kueneman, Antonio González, Greg Humphrey, Rob Knight, Valerie J McKenzie	Molecular Ecology	2022-01-25	Abstract
Interactions between human milk oligosaccharides, microbiota and immune factors in milk of women with and without mastitis.	Irma Castro, Cristina García-Carral, Annalee Furst, Sadaf Khwajazada, Janneiry García, Rebeca Arroyo, Lorena Ruiz, Juan M Rodríguez, Lars Bode, Leónides Fernández	Scientific Reports	2022-01-25	Abstract
SARS-CoV-2 vaccination induces immunological T cell memory able to cross-recognize variants from Alpha to Omicron.	Alison Tarke, Camila H Coelho, Zeli Zhang, Jennifer M Dan, Esther Dawen Yu, Nils Methot, Nathaniel I Bloom, Benjamin Goodwin, Elizabeth Phillips, Simon Mallal, John Sidney, Gilberto Filaci, Daniela Weiskopf, Ricardo da Silva Antunes, Shane Crotty, Alba Grifoni, Alessandro Sette	Cell	2022-01-24	Abstract
Stenotrophomonas maltophilia in patients with bronchiectasis: An analysis of the US bronchiectasis and NTM Research Registry.	Mark L Metersky, Radmila Choate, Timothy R Aksamit, Douglas Conrad, Nicole C Lapinel, Diego J Maselli, Pamela J McShane	Respiratory Medicine	2022-01-24	Abstract
Colesevelam ameliorates non-alcoholic steatohepatitis and obesity in mice.	Phillipp Hartmann, Yi Duan, Yukiko Miyamoto, Münevver Demir, Sonja Lang, Elda Hasa, Patrick Stern, Dennis Yamashita, Mary Conrad, Lars Eckmann, Bernd Schnabl	Hepatology International	2022-01-24	Abstract
Genome-scale analysis of genetic regulatory elements in Streptomyces avermitilis MA-4680 using transcript boundary information.	Yongjae Lee, Namil Lee, Soonkyu Hwang, Woori Kim, Suhyung Cho, Bernhard O Palsson, Byung-Kwan Cho	BMC Genomics	2022-01-21	Abstract
Isolation and characterization of Streptomyces bacteriophages and Streptomyces strains encoding biosynthetic arsenals.	Elizabeth T Montaño, Jason F Nideffer, Lauren Brumage, Marcella Erb, Julia Busch, Lynley Fernandez, Alan I Derman, John Paul Davis, Elena Estrada, Sharon Fu, Danielle Le, Aishwarya Vuppala, Cassidy Tran, Elaine Luterstein, Shivani Lakkaraju, Sriya Panchagnula, Caroline Ren, Jennifer Doan, Sharon Tran, Jamielyn Soriano, Yuya Fujita, Pranathi Gutala, Quinn Fujii, Minda Lee, Anthony Bui, Carleen Villarreal, Samuel R Shing, Sean Kim, Danielle Freeman, Vipula Racha, Alicia Ho, Prianka Kumar, Kian Falah, Thomas Dawson, Eray Enustun, Amy Prichard, Ana Gomez, Kanika Khanna, Shelly Trigg, Kit Pogliano, Joe Pogliano	PloS One	2022-01-21	Abstract
Ethical Considerations for Gene Drive: Challenges of Balancing Inclusion, Power and Perspectives.	Ana Kormos, Gregory C Lanzaro, Ethan Bier, Vanilson Santos, Lodney Nazaré, João Pinto, Adionilde Aguiar Dos Santos, Anthony A James	Frontiers In Bioengineering And Biotechnology	2022-01-21	Abstract
A human antibody reveals a conserved site on beta-coronavirus spike proteins and confers protection against SARS-CoV-2 infection.	Panpan Zhou, Meng Yuan, Ge Song, Nathan Beutler, Namir Shaabani, Deli Huang, Wan-Ting He, Xueyong Zhu, Sean Callaghan, Peter Yong, Fabio Anzanello, Linghang Peng, James Ricketts, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, David Nemazee, John R Teijaro, Thomas F Rogers, Ian A Wilson, Dennis R Burton, Raiees Andrabi	BioRxiv : The Preprint Server For Biology	2022-01-21	Abstract
No infectious SARS-CoV-2 in breast milk from a cohort of 110 lactating women.	Paul Krogstad, Deisy Contreras, Hwee Ng, Nicole Tobin, Christina D Chambers, Kerri Bertrand, Lars Bode, Grace M Aldrovandi	Pediatric Research	2022-01-19	Abstract
From structure to sequence: Antibody discovery using cryoEM.	Aleksandar Antanasijevic, Charles A Bowman, Robert N Kirchdoerfer, Christopher A Cottrell, Gabriel Ozorowski, Amit A Upadhyay, Kimberly M Cirelli, Diane G Carnathan, Chiamaka A Enemuo, Leigh M Sewall, Bartek Nogal, Fangzhu Zhao, Bettina Groschel, William R Schief, Devin Sok, Guido Silvestri, Shane Crotty, Steven E Bosinger, Andrew B Ward	Science Advances	2022-01-19	Abstract
Why sequence all eukaryotes?	Mark Blaxter, John M Archibald, Anna K Childers, Jonathan A Coddington, Keith A Crandall, Federica Di Palma, Richard Durbin, Scott V Edwards, Jennifer A M Graves, Kevin J Hackett, Neil Hall, Erich D Jarvis, Rebecca N Johnson, Elinor K Karlsson, W John Kress, Shigehiro Kuraku, Mara K N Lawniczak, Kerstin Lindblad-Toh, Jose V Lopez, Nancy A Moran, Gene E Robinson, Oliver A Ryder, Beth Shapiro, Pamela S Soltis, Tandy Warnow, Guojie Zhang, Harris A Lewin	Proceedings Of The National Academy Of Sciences Of The United States Of America	2022-01-19	Abstract
The Earth BioGenome Project 2020: Starting the clock.	Harris A Lewin, Stephen Richards, Erez Lieberman Aiden, Miguel L Allende, John M Archibald, Miklós Bálint, Katharine B Barker, Bridget Baumgartner, Katherine Belov, Giorgio Bertorelle, Mark L Blaxter, Jing Cai, Nicolette D Caperello, Keith Carlson, Juan Carlos Castilla-Rubio, Shu-Miaw Chaw, Lei Chen, Anna K Childers, Jonathan A Coddington, Dalia A Conde, Montserrat Corominas, Keith A Crandall, Andrew J Crawford, Federica DiPalma, Richard Durbin, ThankGod E Ebenezer, Scott V Edwards, Olivier Fedrigo, Paul Flicek, Giulio Formenti, Richard A Gibbs, M Thomas P Gilbert, Melissa M Goldstein, Jennifer Marshall Graves, Henry T Greely, Igor V Grigoriev, Kevin J Hackett, Neil Hall, David Haussler, Kristofer M Helgen, Carolyn J Hogg, Sachiko Isobe, Kjetill Sigurd Jakobsen, Axel Janke, Erich D Jarvis, Warren E Johnson, Steven J M Jones, Elinor K Karlsson, Paul J Kersey, Jin-Hyoung Kim, W John Kress, Shigehiro Kuraku, Mara K N Lawniczak, James H Leebens-Mack, Xueyan Li, Kerstin Lindblad-Toh, Xin Liu, Jose V Lopez, Tomas Marques-Bonet, Sophie Mazard, Jonna A K Mazet, Camila J Mazzoni, Eugene W Myers, Rachel J O'Neill, Sadye Paez, Hyun Park, Gene E Robinson, Cristina Roquet, Oliver A Ryder, Jamal S M Sabir, H Bradley Shaffer, Timothy M Shank, Jacob S Sherkow, Pamela S Soltis, Boping Tang, Leho Tedersoo, Marcela Uliano-Silva, Kun Wang, Xiaofeng Wei, Regina Wetzer, Julia L Wilson, Xun Xu, Huanming Yang, Anne D Yoder, Guojie Zhang	Proceedings Of The National Academy Of Sciences Of The United States Of America	2022-01-19	Abstract
Correction to: Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers.	Qiyun Zhu, Qiangchuan Hou, Shi Huang, Qianying Ou, Dongxue Huo, Yoshiki Vázquez-Baeza, Chaoping Cen, Victor Cantu, Mehrbod Estaki, Haibo Chang, Pedro Belda-Ferre, Ho-Cheol Kim, Kaining Chen, Rob Knight, Jiachao Zhang	The ISME Journal	2022-01-18	Abstract
Considerations for the Use of Phage Therapy in Clinical Practice.	Gina A Suh, Thomas P Lodise, Pranita D Tamma, Jane M Knisely, Jose Alexander, Saima Aslam, Karen D Barton, Erica Bizzell, Katherine M C Totten, Joseph Campbell, Benjamin K Chan, Scott A Cunningham, Katherine E Goodman, Kerryl Greenwood-Quaintance, Anthony D Harris, Shayla Hesse, Anthony Maresso, Veronique Nussenblatt, David Pride, Michael Rybak, Zoe Sund, David Van Duin, Daria Van Tyne, Robin Patel,	Antimicrobial Agents And Chemotherapy	2022-01-18	Abstract
Liver specific, systemic and genetic contributors to alcohol-related liver disease progression.	Bernd Schnabl, Gavin E Arteel, Felix Stickel, Jan Hengstler, Nachiket Vartak, Ahmed Ghallab, Steven Dooley, Yujia Li, Robert F Schwabe	Zeitschrift Fur Gastroenterologie	2022-01-18	Abstract
Neuronally-enriched exosomal microRNA-27b mediates acute effects of ibuprofen on reward-related brain activity in healthy adults: a randomized, placebo-controlled, double-blind trial.	Kaiping Burrows, Leandra K Figueroa-Hall, Rayus Kuplicki, Jennifer L Stewart, Ahlam M Alarbi, Rajagopal Ramesh, Jonathan B Savitz, T Kent Teague, Victoria B Risbrough, Martin P Paulus	Scientific Reports	2022-01-17	Abstract
Conceptual strategies for characterizing interactions in microbial communities.	Sho M Kodera, Promi Das, Jack A Gilbert, Holly L Lutz	IScience	2022-01-15	Abstract
A Charge-Switchable Zwitterionic Peptide for Rapid Detection of SARS-CoV-2 Main Protease.	Zhicheng Jin, Yash Mantri, Maurice Retout, Yong Cheng, Jiajing Zhou, Alec Jorns, Pavla Fajtova, Wonjun Yim, Colman Moore, Ming Xu, Matthew N Creyer, Raina M Borum, Jingcheng Zhou, Zhuohong Wu, Tengyu He, William F Penny, Anthony J O'Donoghue, Jesse V Jokerst	Angewandte Chemie (International Ed. In English)	2022-01-14	Abstract
A Dual-Color Fluorescent Probe Allows Simultaneous Imaging of Main and Papain-like Proteases of SARS-CoV-2-Infected Cells for Accurate Detection and Rapid Inhibitor Screening.	Yong Cheng, Raina M Borum, Alex E Clark, Zhicheng Jin, Colman Moore, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Jesse V Jokerst	Angewandte Chemie (International Ed. In English)	2022-01-14	Abstract
Gestational insulin resistance is mediated by the gut microbiome-indoleamine 2,3-dioxygenase axis.	Medha Priyadarshini, Guadalupe Navarro, Derek J Reiman, Anukriti Sharma, Kai Xu, Kristen Lednovich, Christopher R Manzella, Md Wasim Khan, Mariana Salas Garcia, Sarah Allard, Barton Wicksteed, George E Chlipala, Barbara Szynal, Beatriz Penalver Bernabe, Pauline M Maki, Ravinder K Gill, Gary H Perdew, Jack Gilbert, Yang Dai, Brian T Layden	Gastroenterology	2022-01-12	Abstract
Structure and dynamics of SARS-CoV-2 proofreading exoribonuclease ExoN.	Nicholas H Moeller, Ke Shi, Özlem Demir, Christopher Belica, Surajit Banerjee, Lulu Yin, Cameron Durfee, Rommie E Amaro, Hideki Aihara	Proceedings Of The National Academy Of Sciences Of The United States Of America	2022-01-11	Abstract
Comparison of the First and Second Waves of the Coronavirus Disease 2019 Pandemic in Children and Adolescents in a Middle-Income Country: Clinical Impact Associated with Severe Acute Respiratory Syndrome Coronavirus 2 Gamma Lineage.	Eduardo A Oliveira, Ana Cristina Simões E Silva, Maria Christina L Oliveira, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Debora M Miranda, Daniella B Martelli, Ludmila R Silva, Clara C Pinhati, Hercílio Martelli-Júnior	The Journal Of Pediatrics	2022-01-11	Abstract
The transcription factor ZIP-1 promotes resistance to intracellular infection in Caenorhabditis elegans.	Vladimir Lažetić, Fengting Wu, Lianne B Cohen, Kirthi C Reddy, Ya-Ting Chang, Spencer S Gang, Gira Bhabha, Emily R Troemel	Nature Communications	2022-01-10	Abstract
Inhibition of histamine accumulation by novel histamine-degrading species of sp. isolated from goats and sheep milk.	Safoora Pashangeh, Seyed Shahram Shekarforoush, Mahmoud Aminlari, Saeid Hosseinzadeh, Victor Nizet, Samira Dahesh, Samane Rahmdel	Food Science & Nutrition	2022-01-09	Abstract
Comparative Analysis of T Cell Spatial Proteomics and the Influence of HIV Expression.	Aaron L Oom, Charlotte A Stoneham, Mary K Lewinski, Alicia Richards, Jacob M Wozniak, Km Shams-Ud-Doha, David J Gonzalez, Nevan J Krogan, John Guatelli	Molecular & Cellular Proteomics : MCP	2022-01-08	Abstract
Roles for the Mycobiome in Liver Disease.	Suling Zeng, Bernd Schnabl	Liver International : Official Journal Of The International Association For The Study Of The Liver	2022-01-07	Abstract
An intestinally secreted host factor promotes microsporidia invasion of .	Hala Tamim El Jarkass, Calvin Mok, Michael R Schertzberg, Andrew G Fraser, Emily R Troemel, Aaron W Reinke	ELife	2022-01-07	Abstract
A machine-learning algorithm for diagnosis of multisystem inflammatory syndrome in children and Kawasaki disease in the USA: a retrospective model development and validation study.	Jonathan Y Lam, Chisato Shimizu, Adriana H Tremoulet, Emelia Bainto, Samantha C Roberts, Nipha Sivilay, Michael A Gardiner, John T Kanegaye, Alexander H Hogan, Juan C Salazar, Sindhu Mohandas, Jacqueline R Szmuszkovicz, Simran Mahanta, Audrey Dionne, Jane W Newburger, Emily Ansusinha, Roberta L DeBiasi, Shiying Hao, Xuefeng B Ling, Harvey J Cohen, Shamim Nemati, Jane C Burns, ,	The Lancet. Digital Health	2022-01-06	Abstract
Disparities in telemedicine during COVID-19.	Alexander S Qian, Melody K Schiaffino, Vinit Nalawade, Lara Aziz, Fernanda V Pacheco, Bao Nguyen, Peter Vu, Sandip P Patel, Maria Elena Martinez, James D Murphy	Cancer Medicine	2022-01-05	Abstract
Human Milk Oligosaccharides Reduce Murine Group B Vaginal Colonization with Minimal Impact on the Vaginal Microbiota.	Marlyd E Mejia, Samantha Ottinger, Alison Vrbanac, Priyanka Babu, Jacob J Zulk, David Moorshead, Lars Bode, Victor Nizet, Kathryn A Patras	MSphere	2022-01-05	Abstract
Machine Learning Applied to Omics Datasets Predicts Mortality in Patients with Alcoholic Hepatitis.	Bei Gao, Tsung-Chin Wu, Sonja Lang, Lu Jiang, Yi Duan, Derrick E Fouts, Xinlian Zhang, Xin-Ming Tu, Bernd Schnabl	Metabolites	2022-01-05	Abstract
Gut Microbiome and Alcohol-associated Liver Disease.	Cyriac A Philips, Bernd Schnabl, Jasmohan S Bajaj	Journal Of Clinical And Experimental Hepatology	2022-01-04	Abstract
Pediatric Osteoarticular Infections Caused by Mycobacteria Tuberculosis Complex: A 26-Year Review of Cases in San Diego, CA.	Ian Drobish, Nanda Ramchandar, Vanessa Raabe, Alice Pong, John Bradley, Christopher Cannavino	The Pediatric Infectious Disease Journal	2022-01-03	Abstract
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities.	Derek M Bickhart, Mikhail Kolmogorov, Elizabeth Tseng, Daniel M Portik, Anton Korobeynikov, Ivan Tolstoganov, Gherman Uritskiy, Ivan Liachko, Shawn T Sullivan, Sung Bong Shin, Alvah Zorea, Victòria Pascal Andreu, Kevin Panke-Buisse, Marnix H Medema, Itzhak Mizrahi, Pavel A Pevzner, Timothy P L Smith	Nature Biotechnology	2022-01-03	Abstract
Chlororesistoflavins A and B, Chlorinated Benzopyrene Antibiotics Produced by the Marine-Derived Actinomycete sp. Strain EG32.	Min Cheol Kim, Zhifei Li, Reiko Cullum, Tadeusz F Molinski, Mennat Allah G Eid, Ali M S Hebishy, Ahmed H I Faraag, Ahmed E Abdel Moneim, Mohamed S Abdelfattah, William Fenical	Journal Of Natural Products	2021-12-30	Abstract
Possibilities and limits for using the gut microbiome to improve captive animal health.	Jessica Diaz, Aspen T Reese	Animal Microbiome	2021-12-29	Abstract
Saccharobisindole, Neoasterric Methyl Ester, and 7-Chloro-4(1H)-quinolone: Three New Compounds Isolated from the Marine Bacterium sp.	Sohee Kim, Tu Cam Le, Sang-Ah Han, Prima F Hillman, Ahreum Hong, Sunghoon Hwang, Young Eun Du, Hiyoung Kim, Dong-Chan Oh, Sun-Shin Cha, Jihye Lee, Sang-Jip Nam, William Fenical	Marine Drugs	2021-12-29	Abstract
Genome-Scale Metabolic Modeling Enables In-Depth Understanding of Big Data.	Anurag Passi, Juan D Tibocha-Bonilla, Manish Kumar, Diego Tec-Campos, Karsten Zengler, Cristal Zuniga	Metabolites	2021-12-24	Abstract
Extremophile enzyme optimization for low temperature and high salinity are fundamentally incompatible.	Luke Piszkin, Jeff Bowman	Extremophiles : Life Under Extreme Conditions	2021-12-23	Abstract
Linking anaerobic gut bacteria and cardiovascular disease.	Joanna Coker, Livia S Zaramela, Karsten Zengler	Nature Microbiology	2021-12-23	Abstract
Class Ib MHC-Mediated Immune Interactions Play a Critical Role in Maintaining Mucosal Homeostasis in the Mammalian Large Intestine.	Suryasarathi Dasgupta, Igor Maricic, Jay Tang, Stephen Wandro, Kelly Weldon, Carolina S Carpenter, Lars Eckmann, Jesus Rivera-Nieves, William Sandborn, Rob Knight, Peter Dorrestein, Austin D Swafford, Vipin Kumar	ImmunoHorizons	2021-12-15	Abstract
Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions.	Lian Narunsky-Haziza, Gregory D Sepich-Poore, Ilana Livyatan, Omer Asraf, Cameron Martino, Deborah Nejman, Nancy Gavert, Jason E Stajich, Guy Amit, Antonio González, Stephen Wandro, Gili Perry, Ruthie Ariel, Arnon Meltser, Justin P Shaffer, Qiyun Zhu, Nora Balint-Lahat, Iris Barshack, Maya Dadiani, Einav N Gal-Yam, Sandip Pravin Patel, Amir Bashan, Austin D Swafford, Yitzhak Pilpel, Rob Knight, Ravid Straussman	Cell	2021-12-13	Abstract
Mammalian gut metabolomes mirror microbiome composition and host phylogeny.	Rachel Gregor, Maraike Probst, Stav Eyal, Alexander Aksenov, Goor Sasson, Igal Horovitz, Pieter C Dorrestein, Michael M Meijler, Itzhak Mizrahi	The ISME Journal	2021-12-13	Abstract
Brilliantia kiribatiensis, a new genus and species of Cladophorales (Chlorophyta) from the remote coral reefs of the Southern Line Islands, Pacific Ocean.	Frederik Leliaert, Emily L A Kelly, Jan Janouškovec, Michael D Fox, Maggie D Johnson, Farran M Redfern, Taati Eria, Andreas F Haas, Enric Sala, Stuart A Sandin, Jennifer E Smith	Journal Of Phycology	2021-12-12	Abstract
From microbial community structure to metabolic inference using paprica.	Natalia G Erazo, Avishek Dutta, Jeff S Bowman	STAR Protocols	2021-12-11	Abstract
Microbial co-occurrence complicates associations of gut microbiome with US immigration, dietary intake and obesity.	Zheng Wang, Mykhaylo Usyk, Yoshiki Vázquez-Baeza, Guo-Chong Chen, Carmen R Isasi, Jessica S Williams-Nguyen, Simin Hua, Daniel McDonald, Bharat Thyagarajan, Martha L Daviglus, Jianwen Cai, Kari E North, Tao Wang, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi	Genome Biology	2021-12-10	Abstract
Bicarbonate modulates delafloxacin activity against MDR Staphylococcus aureus and Pseudomonas aeruginosa.	Mische Holland, Elisabet Bjanes, Victor Nizet, Nicholas Dillon	The Journal Of Antimicrobial Chemotherapy	2021-12-10	Abstract
Prior Methamphetamine Use Disorder History Does Not Impair Interoceptive Processing of Soft Touch in HIV Infection.	Amanda Bischoff-Grethe, Ronald J Ellis, Susan F Tapert, Martin P Paulus, Igor Grant, Translational Methamphetamine Aids Research Center Tmarc	Viruses	2021-12-10	Abstract
The population genetics of collateral resistance and sensitivity.	Sarah M Ardell, Sergey Kryazhimskiy	ELife	2021-12-10	Abstract
CRIg on liver macrophages clears pathobionts and protects against alcoholic liver disease.	Yi Duan, Huikuan Chu, Katharina Brandl, Lu Jiang, Suling Zeng, Nairika Meshgin, Eleni Papachristoforou, Josepmaria Argemi, Beatriz G Mendes, Yanhan Wang, Hua Su, Weizhong Sun, Cristina Llorente, Tim Hendrikx, Xiao Liu, Mojgan Hosseini, Tatiana Kisseleva, David A Brenner, Ramon Bataller, Prakash Ramachandran, Michael Karin, Wenxian Fu, Bernd Schnabl	Nature Communications	2021-12-09	Abstract
The fecal mycobiome in non-alcoholic fatty liver disease.	Münevver Demir, Sonja Lang, Phillipp Hartmann, Yi Duan, Anna Martin, Yukiko Miyamoto, Marina Bondareva, Xinlian Zhang, Yanhan Wang, Philipp Kasper, Corinna Bang, Christoph Roderburg, Frank Tacke, Hans-Michael Steffen, Tobias Goeser, Andrey Kruglov, Lars Eckmann, Peter Stärkel, Derrick E Fouts, Bernd Schnabl	Journal Of Hepatology	2021-12-09	Abstract
Defining and quantifying the core microbiome: Challenges and prospects.	Alexander T Neu, Eric E Allen, Kaustuv Roy	Proceedings Of The National Academy Of Sciences Of The United States Of America	2021-12-04	Abstract
Clean room microbiome complexity impacts planetary protection bioburden.	Ryan Hendrickson, Camilla Urbaniak, Jeremiah J Minich, Heidi S Aronson, Cameron Martino, Ramunas Stepanauskas, Rob Knight, Kasthuri Venkateswaran	Microbiome	2021-12-04	Abstract
Seriniquinones as Therapeutic Leads for Treatment of BRAF and NRAS Mutant Melanomas.	Amanda S Hirata, Paula Rezende-Teixeira, João Agostinho Machado-Neto, Paula C Jimenez, James J La Clair, William Fenical, Leticia V Costa-Lotufo	Molecules (Basel, Switzerland)	2021-12-04	Abstract
GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser.	Daniel Petras, Vanessa V Phelan, Deepa Acharya, Andrew E Allen, Allegra T Aron, Nuno Bandeira, Benjamin P Bowen, Deirdre Belle-Oudry, Simon Boecker, Dale A Cummings, Jessica M Deutsch, Eoin Fahy, Neha Garg, Rachel Gregor, Jo Handelsman, Mirtha Navarro-Hoyos, Alan K Jarmusch, Scott A Jarmusch, Katherine Louie, Katherine N Maloney, Michael T Marty, Michael M Meijler, Itzhak Mizrahi, Rachel L Neve, Trent R Northen, Carlos Molina-Santiago, Morgan Panitchpakdi, Benjamin Pullman, Aaron W Puri, Robin Schmid, Shankar Subramaniam, Monica Thukral, Felipe Vasquez-Castro, Pieter C Dorrestein, Mingxun Wang	Nature Methods	2021-12-03	Abstract
A particulate saponin/TLR agonist vaccine adjuvant alters lymph flow and modulates adaptive immunity.	Murillo Silva, Yu Kato, Mariane B Melo, Ivy Phung, Brian L Freeman, Zhongming Li, Kangsan Roh, Jan W Van Wijnbergen, Hannah Watkins, Chiamaka A Enemuo, Brittany L Hartwell, Jason Y H Chang, Shuhao Xiao, Kristen A Rodrigues, Kimberly M Cirelli, Na Li, Sonya Haupt, Aereas Aung, Benjamin Cossette, Wuhbet Abraham, Swati Kataria, Raiza Bastidas, Jinal Bhiman, Caitlyn Linde, Nathaniel I Bloom, Bettina Groschel, Erik Georgeson, Nicole Phelps, Ayush Thomas, Julia Bals, Diane G Carnathan, Daniel Lingwood, Dennis R Burton, Galit Alter, Timothy P Padera, Angela M Belcher, William R Schief, Guido Silvestri, Ruth M Ruprecht, Shane Crotty, Darrell J Irvine	Science Immunology	2021-12-03	Abstract
Gut microbiota-driven brain Aβ amyloidosis in mice requires microglia.	Hemraj B Dodiya, Holly L Lutz, Ian Q Weigle, Priyam Patel, Julia Michalkiewicz, Carlos J Roman-Santiago, Can Martin Zhang, Yingxia Liang, Abhinav Srinath, Xulun Zhang, Jessica Xia, Monica Olszewski, Xiaoqiong Zhang, Matthew John Schipma, Eugene B Chang, Rudolph E Tanzi, Jack A Gilbert, Sangram S Sisodia	The Journal Of Experimental Medicine	2021-12-02	Abstract
Intestinal commensal microbiota and cytokines regulate Fut2 Paneth cells for gut defense.	Mariko Kamioka, Yoshiyuki Goto, Kiminori Nakamura, Yuki Yokoi, Rina Sugimoto, Shuya Ohira, Yosuke Kurashima, Shingo Umemoto, Shintaro Sato, Jun Kunisawa, Yu Takahashi, Steven E Domino, Jean-Christophe Renauld, Susumu Nakae, Yoichiro Iwakura, Peter B Ernst, Tokiyoshi Ayabe, Hiroshi Kiyono	Proceedings Of The National Academy Of Sciences Of The United States Of America	2021-12-02	Abstract
Siderophore-mediated zinc acquisition enhances enterobacterial colonization of the inflamed gut.	Judith Behnsen, Hui Zhi, Allegra T Aron, Vivekanandan Subramanian, William Santus, Michael H Lee, Romana R Gerner, Daniel Petras, Janet Z Liu, Keith D Green, Sarah L Price, Jose Camacho, Hannah Hillman, Joshua Tjokrosurjo, Nicola P Montaldo, Evelyn M Hoover, Sean Treacy-Abarca, Benjamin A Gilston, Eric P Skaar, Walter J Chazin, Sylvie Garneau-Tsodikova, Matthew B Lawrenz, Robert D Perry, Sean-Paul Nuccio, Pieter C Dorrestein, Manuela Raffatellu	Nature Communications	2021-12-01	Abstract
The Fecal Microbiome and Metabolome of Pitt Hopkins Syndrome, a Severe Autism Spectrum Disorder.	Amanda H Dilmore, Daniel McDonald, Tanya T Nguyen, James B Adams, Rosa Krajmalnik-Brown, Emmanuel Elijah, Pieter C Dorrestein, Rob Knight	MSystems	2021-11-30	Abstract
A combined EM and proteomic analysis places HIV-1 Vpu at the crossroads of retromer and ESCRT complexes: PTPN23 is a Vpu-cofactor.	Charlotte A Stoneham, Simon Langer, Paul D De Jesus, Jacob M Wozniak, John Lapek, Thomas Deerinck, Andrea Thor, Lars Pache, Sumit K Chanda, David J Gonzalez, Mark Ellisman, John Guatelli	PLoS Pathogens	2021-11-29	Abstract
Differential Fecal Microbiome Dysbiosis after Equivalent Traumatic Brain Injury in Aged Versus Young Adult Mice.	Booker T Davis, Mecca B A R Islam, Promi Das, Jack A Gilbert, Karen J Ho, Steven J Schwulst	Journal Of Experimental Neurology	2021-11-26	Abstract
Redrawing therapeutic boundaries: microbiota and cancer.	Jonathan Sholl, Gregory D Sepich-Poore, Rob Knight, Thomas Pradeu	Trends In Cancer	2021-11-26	Abstract
Host Factors in Dysregulation of the Gut Barrier Function during Alcohol-Associated Liver Disease.	Luca Maccioni, Isabelle A Leclercq, Bernd Schnabl, Peter Stärkel	International Journal Of Molecular Sciences	2021-11-24	Abstract
Vertical Inheritance Facilitates Interspecies Diversification in Biosynthetic Gene Clusters and Specialized Metabolites.	Alexander B Chase, Douglas Sweeney, Mitchell N Muskat, Dulce G Guillén-Matus, Paul R Jensen	MBio	2021-11-23	Abstract
Comparison of fecal and oral collection methods for studies of the human microbiota in two Iranian cohorts.	Zeni Wu, Autumn G Hullings, Reza Ghanbari, Arash Etemadi, Yunhu Wan, Bin Zhu, Hossein Poustchi, Behnam Bagheri Fahraji, Mohammad Javad Zare Sakhvidi, Jianxin Shi, Rob Knight, Reza Malekzadeh, Rashmi Sinha, Emily Vogtmann	BMC Microbiology	2021-11-22	Abstract
Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals.	Linda Wegley Kelly, Craig E Nelson, Daniel Petras, Irina Koester, Zachary A Quinlan, Milou G I Arts, Louis-Felix Nothias, Jacqueline Comstock, Brandie M White, Ellen C Hopmans, Fleur C van Duyl, Craig A Carlson, Lihini I Aluwihare, Pieter C Dorrestein, Andreas F Haas	Proceedings Of The National Academy Of Sciences Of The United States Of America	2021-11-22	Abstract
Native mass spectrometry-based metabolomics identifies metal-binding compounds.	Allegra T Aron, Daniel Petras, Robin Schmid, Julia M Gauglitz, Isabell Büttel, Luis Antelo, Hui Zhi, Sean-Paul Nuccio, Christina C Saak, Kien P Malarney, Eckhard Thines, Rachel J Dutton, Lihini I Aluwihare, Manuela Raffatellu, Pieter C Dorrestein	Nature Chemistry	2021-11-18	Abstract
Severe delayed hypersensitivity reactions to IL-1 and IL-6 inhibitors link to common HLA-DRB1*15 alleles.	Vivian E Saper, Michael J Ombrello, Adriana H Tremoulet, Gonzalo Montero-Martin, Sampath Prahalad, Scott Canna, Chisato Shimizu, Gail Deutsch, Serena Y Tan, Elaine F Remmers, Dimitri Monos, Timothy Hahn, Omkar K Phadke, Elaine Cassidy, Ian Ferguson, Vamsee Mallajosyula, Jianpeng Xu, Jaime S Rosa Duque, Gilbert T Chua, Debopam Ghosh, Ann Marie Szymanski, Danielle Rubin, Jane C Burns, Lu Tian, Marcelo A Fernandez-Vina, Elizabeth D Mellins, Jill A Hollenbach, ,	Annals Of The Rheumatic Diseases	2021-11-17	Abstract
Reporting guidelines for human microbiome research: the STORMS checklist.	Chloe Mirzayi, Audrey Renson, , , Fatima Zohra, Shaimaa Elsafoury, Ludwig Geistlinger, Lora J Kasselman, Kelly Eckenrode, Janneke van de Wijgert, Amy Loughman, Francine Z Marques, David A MacIntyre, Manimozhiyan Arumugam, Rimsha Azhar, Francesco Beghini, Kirk Bergstrom, Ami Bhatt, Jordan E Bisanz, Jonathan Braun, Hector Corrada Bravo, Gregory A Buck, Frederic Bushman, David Casero, Gerard Clarke, Maria Carmen Collado, Paul D Cotter, John F Cryan, Ryan T Demmer, Suzanne Devkota, Eran Elinav, Juan S Escobar, Jennifer Fettweis, Robert D Finn, Anthony A Fodor, Sofia Forslund, Andre Franke, Cesare Furlanello, Jack Gilbert, Elizabeth Grice, Benjamin Haibe-Kains, Scott Handley, Pamela Herd, Susan Holmes, Jonathan P Jacobs, Lisa Karstens, Rob Knight, Dan Knights, Omry Koren, Douglas S Kwon, Morgan Langille, Brianna Lindsay, Dermot McGovern, Alice C McHardy, Shannon McWeeney, Noel T Mueller, Luigi Nezi, Matthew Olm, Noah Palm, Edoardo Pasolli, Jeroen Raes, Matthew R Redinbo, Malte Rühlemann, R Balfour Sartor, Patrick D Schloss, Lynn Schriml, Eran Segal, Michelle Shardell, Thomas Sharpton, Ekaterina Smirnova, Harry Sokol, Justin L Sonnenburg, Sujatha Srinivasan, Louise B Thingholm, Peter J Turnbaugh, Vaibhav Upadhyay, Ramona L Walls, Paul Wilmes, Takuji Yamada, Georg Zeller, Mingyu Zhang, Ni Zhao, Liping Zhao, Wenjun Bao, Aedin Culhane, Viswanath Devanarayan, Joaquin Dopazo, Xiaohui Fan, Matthias Fischer, Wendell Jones, Rebecca Kusko, Christopher E Mason, Tim R Mercer, Susanna-Assunta Sansone, Andreas Scherer, Leming Shi, Shraddha Thakkar, Weida Tong, Russ Wolfinger, Christopher Hunter, Nicola Segata, Curtis Huttenhower, Jennifer B Dowd, Heidi E Jones, Levi Waldron	Nature Medicine	2021-11-17	Abstract
Gut microbiome in Parkinson's disease: New insights from meta-analysis.	Tzi Shin Toh, Chun Wie Chong, Shen-Yang Lim, Jeff Bowman, Mihai Cirstea, Chin-Hsien Lin, Chieh-Chang Chen, Silke Appel-Cresswell, B Brett Finlay, Ai Huey Tan	Parkinsonism & Related Disorders	2021-11-17	Abstract
Bacteriophages and their potential for treatment of gastrointestinal diseases.	Yi Duan, Ry Young, Bernd Schnabl	Nature Reviews. Gastroenterology & Hepatology	2021-11-15	Abstract
High-resolution in situ analysis of Cas9 germline transcript distributions in gene-drive Anopheles mosquitoes.	Gerard Terradas, Anita Hermann, Anthony A James, William McGinnis, Ethan Bier	G3 (Bethesda, Md.)	2021-11-15	Abstract