These are the LAST 12 MONTHS of publications from the CMI membership team.
To see or search all of the publications, visit the archives page.
| Article | Authors | Journal | Date | Abstract | Reach |
|---|---|---|---|---|---|
| Optimization of nutrient utilization efficiency and productivity for algal cultures under light and dark cycles using genome-scale model process control. | Chien-Ting Li, Richard Eng, Cristal Zuniga, Kai-Wen Huang, Yiqun Chen, Karsten Zengler, Michael J Betenbaugh | NPJ Systems Biology And Applications | 2023-03-15 | Abstract | |
| Characterization of SARS-CoV-2 Distribution and Microbial Succession in a Clinical Microbiology Testing Facility during the SARS-CoV-2 Pandemic. | Govind Prasad Sah, Grace Kovalick, Jessica Chopyk, Peiting Kuo, Lina Huang, Pooja Ghatbale, Promi Das, Susan Realegeno, Rob Knight, Jack A Gilbert, David T Pride | Microbiology Spectrum | 2023-03-14 | Abstract | |
| Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut. | Matthew H Foley, Morgan E Walker, Allison K Stewart, Sarah O'Flaherty, Emily C Gentry, Shakshi Patel, Violet V Beaty, Garrison Allen, Meichen Pan, Joshua B Simpson, Caroline Perkins, Molly E Vanhoy, Michael K Dougherty, Sarah K McGill, Ajay S Gulati, Pieter C Dorrestein, Erin S Baker, Matthew R Redinbo, Rodolphe Barrangou, Casey M Theriot | Nature Microbiology | 2023-03-13 | Abstract | |
| Effectiveness of BNT162b2 and CoronaVac vaccines against omicron in children aged 5 to 11 years. | Eduardo A Oliveira, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Ludmila R Silva, Daniella B Martelli, Clara C Pinhati, Hercílio Martelli-Júnior | World Journal Of Pediatrics : WJP | 2023-03-13 | Abstract | |
| Shared genetic architecture between attention-deficit/hyperactivity disorder and lifespan. | Laura Vilar-Ribó, Judit Cabana-Domínguez, Lourdes Martorell, Josep Antoni Ramos-Quiroga, Sandra Sanchez-Roige, Abraham A Palmer, Elisabet Vilella, Marta Ribasés, Gerard Muntané, María Soler Artigas | Neuropsychopharmacology : Official Publication Of The American College Of Neuropsychopharmacology | 2023-03-11 | Abstract | |
| Association of the gut microbiome with kidney function and damage in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL). | Brandilyn A Peters, Qibin Qi, Mykhaylo Usyk, Martha L Daviglus, Jianwen Cai, Nora Franceschini, James P Lash, Marc D Gellman, Bing Yu, Eric Boerwinkle, Rob Knight, Robert D Burk, Robert C Kaplan | Gut Microbes | 2023-03-08 | Abstract | |
| Captive and urban environments are associated with distinct gut microbiota in deer mice (). | Jessica Diaz, Kent H Redford, Aspen T Reese | Biology Letters | 2023-03-08 | Abstract | |
| Engineered bacteria producing aryl-hydrocarbon receptor agonists protect against ethanol-induced liver disease in mice. | Tetsuya Kouno, Suling Zeng, Yanhan Wang, Yi Duan, Sonja Lang, Bei Gao, Phillipp Hartmann, Noemí Cabré, Cristina Llorente, Chloé Galbert, Patrick Emond, Harry Sokol, Michael James, Chun Cheih Chao, Jian-Rong Gao, Mylene Perreault, David L Hava, Bernd Schnabl | Alcoholism, Clinical And Experimental Research | 2023-03-05 | Abstract | |
| Plasma metabolites with mechanistic and clinical links to the neurovascular disease cavernous angioma. | Abhinav Srinath, Bingqing Xie, Ying Li, Je Yeong Sone, Sharbel Romanos, Chang Chen, Anukriti Sharma, Sean Polster, Pieter C Dorrestein, Kelly C Weldon, Dorothy DeBiasse, Thomas Moore, Rhonda Lightle, Janne Koskimäki, Dongdong Zhang, Agnieszka Stadnik, Kristina Piedad, Matthew Hagan, Abdallah Shkoukani, Julián Carrión-Penagos, Dehua Bi, Le Shen, Robert Shenkar, Yuan Ji, Ashley Sidebottom, Eric Pamer, Jack A Gilbert, Mark L Kahn, Mark D'Souza, Dinanath Sulakhe, Issam A Awad, Romuald Girard | Communications Medicine | 2023-03-03 | Abstract | |
| Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol. | Matthew A Pendergraft, Pedro Belda-Ferre, Daniel Petras, Clare K Morris, Brock A Mitts, Allegra T Aron, MacKenzie Bryant, Tara Schwartz, Gail Ackermann, Greg Humphrey, Ethan Kaandorp, Pieter C Dorrestein, Rob Knight, Kimberly A Prather | Environmental Science & Technology | 2023-03-02 | Abstract | |
| Cell specialization in cyanobacterial biofilm development revealed by expression of a cell-surface and extracellular matrix protein. | Alona Frenkel, Eli Zecharia, Daniel Gómez-Pérez, Eleonora Sendersky, Yevgeni Yegorov, Avi Jacob, Jennifer I C Benichou, York-Dieter Stierhof, Rami Parnasa, Susan S Golden, Eric Kemen, Rakefet Schwarz | NPJ Biofilms And Microbiomes | 2023-03-02 | Abstract | |
| Identification of CD8+ T cell - immune cell communications in ileal Crohn's disease. | Han G Duong, Eunice J Choi, Paul Hsu, Natalie R Chiang, Shefali A Patel, Jocelyn G Olvera, Yi Chia Liu, Yun Hsuan Lin, Priscilla Yao, William H Wong, Cynthia S Indralingam, Matthew S Tsai, Brigid S Boland, Wei Wang, John T Chang | Clinical And Translational Gastroenterology | 2023-03-01 | Abstract | |
| Complete Genome Sequence of an Escherichia coli Strain Isolated from Laboratory Mouse Stool for Use as a Chassis for Transgene Delivery to the Murine Microbiome. | Nicole Siguenza, Baylee J Russell, R Alexander Richter, Amir Zarrinpar | Microbiology Resource Announcements | 2023-03-01 | Abstract | |
| The Gut Microbial Bile Acid Modulation and its Relevance to Digestive Health and Diseases. | Kelly A Fogelson, Pieter C Dorrestein, Amir Zarrinpar, Rob Knight | Gastroenterology | 2023-02-23 | Abstract | |
| Immunoglobulin Y antibodies against cytolysin reduce ethanol-induced liver disease in mice. | Noemí Cabré, Phillipp Hartmann, Cristina Llorente, Tetsuya Kouno, Yanhan Wang, Suling Zeng, Hyun Young Kim, Xinlian Zhang, Tatiana Kisseleva, Subramanian Iyer, Sirisha Kudumala, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2023-02-23 | Abstract | |
| Diet Quality and the Fecal Microbiota in Adults in the American Gut Project. | Alexis D Baldeon, Daniel McDonald, Antonio Gonzalez, Rob Knight, Hannah D Holscher | The Journal Of Nutrition | 2023-02-22 | Abstract | |
| Oral mucosal breaks trigger anti-citrullinated bacterial and human protein antibody responses in rheumatoid arthritis. | R Camille Brewer, Tobias V Lanz, Caryn R Hale, Gregory D Sepich-Poore, Cameron Martino, Austin D Swafford, Thomas S Carroll, Sarah Kongpachith, Lisa K Blum, Serra E Elliott, Nathalie E Blachere, Salina Parveen, John Fak, Vicky Yao, Olga Troyanskaya, Mayu O Frank, Michelle S Bloom, Shaghayegh Jahanbani, Alejandro M Gomez, Radhika Iyer, Nitya S Ramadoss, Orr Sharpe, Sangeetha Chandrasekaran, Lindsay B Kelmenson, Qian Wang, Heidi Wong, Holly L Torres, Mark Wiesen, Dana T Graves, Kevin D Deane, V Michael Holers, Rob Knight, Robert B Darnell, William H Robinson, Dana E Orange | Science Translational Medicine | 2023-02-22 | Abstract | |
| Determination of the Chromatin Openness in Bacterial Genomes. | Mahmoud M Al-Bassam, Karsten Zengler | Methods In Molecular Biology (Clifton, N.J.) | 2023-02-22 | Abstract | |
| Terpene biosynthesis in marine sponge animals. | Kayla Wilson, Tristan de Rond, Immo Burkhardt, Taylor S Steele, Rebecca J B Schäfer, Sheila Podell, Eric E Allen, Bradley S Moore | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2023-02-21 | Abstract | |
| Differences in Bacterial Translocation and Liver Injury in Ethanol Versus Diet-Induced Liver Disease. | Cynthia L Hsu, Yanhan Wang, Yi Duan, Huikuan Chu, Phillipp Hartmann, Cristina Llorente, Rongrong Zhou, Bernd Schnabl | Digestive Diseases And Sciences | 2023-02-20 | Abstract | |
| Microbiome response in an urban river system is dominated by seasonality over wastewater treatment upgrades. | Sho M Kodera, Anukriti Sharma, Cameron Martino, Melissa Dsouza, Mark Grippo, Holly L Lutz, Rob Knight, Jack A Gilbert, Cristina Negri, Sarah M Allard | Environmental Microbiome | 2023-02-19 | Abstract | |
| Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause deadly disease. | Panpan Zhou, Ge Song, Hejun Liu, Meng Yuan, Wan-Ting He, Nathan Beutler, Xueyong Zhu, Longping V Tse, David R Martinez, Alexandra Schäfer, Fabio Anzanello, Peter Yong, Linghang Peng, Katharina Dueker, Rami Musharrafieh, Sean Callaghan, Tazio Capozzola, Oliver Limbo, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, David Nemazee, Joseph G Jardine, Yana Safonova, Bryan Briney, Thomas F Rogers, Ian A Wilson, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees Andrabi | Immunity | 2023-02-16 | Abstract | |
| Using machine learning to improve our understanding of COVID-19 infection in children. | Shraddha Piparia, Andrew Defante, Kelan Tantisira, Julie Ryu | PloS One | 2023-02-15 | Abstract | |
| APOBEC3A Catalytic Inactivity Mutation Induces Tertiary Structure Destabilization. | Katherine F M Jones, Mohamed Shehata, Michael A Carpenter, Rommie E Amaro, Daniel A Harki | ACS Medicinal Chemistry Letters | 2023-02-14 | Abstract | |
| Metagenome-Assembled Genomes from Murine Fecal Microbiomes Dominated by Uncharacterized Bacteria. | Kiarash Rastegar, Scott T Kelley, Varykina G Thackray | Microbiology Resource Announcements | 2023-02-13 | Abstract | |
| Diverse Microbial Hot Spring Mat Communities at Black Canyon of the Colorado River. | Ivan J Moreno, Bianca Brahamsha, Mohamed S Donia, Brian Palenik | Microbial Ecology | 2023-02-09 | Abstract | |
| Man vs Microbes - The Race of the Century. | Ericka Anderson, Bipin Nair, Victor Nizet, Geetha Kumar | Journal Of Medical Microbiology | 2023-02-07 | Abstract | |
| Malice in Chains. | Joshua Osowicki, Victor Nizet | The Journal Of Infectious Diseases | 2023-02-07 | Abstract | |
| Laboratory evolution reveals general and specific tolerance mechanisms for commodity chemicals. | Rebecca M Lennen, Hyun Gyu Lim, Kristian Jensen, Elsayed T Mohammed, Patrick V Phaneuf, Myung Hyun Noh, Sailesh Malla, Rosa A Börner, Ksenia Chekina, Emre Özdemir, Ida Bonde, Anna Koza, Jérôme Maury, Lasse E Pedersen, Lars Y Schöning, Nikolaus Sonnenschein, Bernhard O Palsson, Alex T Nielsen, Morten O A Sommer, Markus J Herrgård, Adam M Feist | Metabolic Engineering | 2023-02-03 | Abstract | |
| The Molecular Effect of Wearing Silver-Threaded Clothing on the Human Skin. | Alexey V Melnik, Chris Callewaert, Kathleen Dorrestein, Rosie Broadhead, Jeremiah J Minich, Madeleine Ernst, Greg Humphrey, Gail Ackermann, Rob Gathercole, Alexander A Aksenov, Rob Knight, Pieter C Dorrestein | MSystems | 2023-02-01 | Abstract | |
| Acute and Postacute COVID-19 Outcomes Among Immunologically Naive Adults During Delta vs Omicron Waves. | Margaret K Doll, Alpana Waghmare, Antje Heit, Brianna Levenson Shakoor, Louise E Kimball, Nina Ozbek, Rachel L Blazevic, Larry Mose, Jim Boonyaratanakornkit, Terry L Stevens-Ayers, Kevin Cornell, Benjamin D Sheppard, Emma Hampson, Faria Sharmin, Benjamin Goodwin, Jennifer M Dan, Tom Archie, Terry O'Connor, David Heckerman, Frank Schmitz, Michael Boeckh, Shane Crotty | JAMA Network Open | 2023-02-01 | Abstract | |
| A Camptothetin Analog, Topotecan, Promotes HIV Latency via Interference with HIV Transcription and RNA Splicing. | Amey Mukim, Davey M Smith, Savitha Deshmukh, Andrew A Qazi, Nadejda Beliakova-Bethell | Journal Of Virology | 2023-01-31 | Abstract | |
| Early transcriptional and epigenetic divergence of CD8+ T cells responding to acute versus chronic infection. | Lauren K Quezada, Wenhao Jin, Yi Chia Liu, Eleanor S Kim, Zhaoren He, Cynthia S Indralingam, Tiffani Tysl, Lara Labarta-Bajo, Ellen J Wehrens, Yeara Jo, Katelynn R Kazane, Christopher Hattori, Elina I Zuniga, Gene W Yeo, John T Chang | PLoS Biology | 2023-01-30 | Abstract | |
| Author Correction: Long-primed germinal centres with enduring affinity maturation and clonal migration. | Jeong Hyun Lee, Henry J Sutton, Christopher A Cottrell, Ivy Phung, Gabriel Ozorowski, Leigh M Sewall, Rebecca Nedellec, Catherine Nakao, Murillo Silva, Sara T Richey, Jonathan L Torres, Wen-Hsin Lee, Erik Georgeson, Michael Kubitz, Sam Hodges, Tina-Marie Mullen, Yumiko Adachi, Kimberly M Cirelli, Amitinder Kaur, Carolina Allers, Marissa Fahlberg, Brooke F Grasperge, Jason P Dufour, Faith Schiro, Pyone P Aye, Oleksandr Kalyuzhniy, Alessia Liguori, Diane G Carnathan, Guido Silvestri, Xiaoying Shen, David C Montefiori, Ronald S Veazey, Andrew B Ward, Lars Hangartner, Dennis R Burton, Darrell J Irvine, William R Schief, Shane Crotty | Nature | 2023-01-30 | Abstract | |
| Enhancer-instructed epigenetic landscape and chromatin compartmentalization dictate a primary antibody repertoire protective against specific bacterial pathogens. | E Mauricio Barajas-Mora, Lindsay Lee, Hanbin Lu, J Andrés Valderrama, Elisabet Bjanes, Victor Nizet, Ann J Feeney, Ming Hu, Cornelis Murre | Nature Immunology | 2023-01-30 | Abstract | |
| Malassezia restricta promotes alcohol-induced liver injury. | Suling Zeng, Phillipp Hartmann, Minji Park, Yi Duan, Sonja Lang, Cristina Llorente, Yanhan Wang, Noemí Cabré, Derrick E Fouts, Petra Bacher, Won Hee Jung, Peter Stärkel, Bernd Schnabl | Hepatology Communications | 2023-01-27 | Abstract | |
| Insulin-regulated serine and lipid metabolism drive peripheral neuropathy. | Michal K Handzlik, Jivani M Gengatharan, Katie E Frizzi, Grace H McGregor, Cameron Martino, Gibraan Rahman, Antonio Gonzalez, Ana M Moreno, Courtney R Green, Lucie S Guernsey, Terry Lin, Patrick Tseng, Yoichiro Ideguchi, Regis J Fallon, Amandine Chaix, Satchidananda Panda, Prashant Mali, Martina Wallace, Rob Knight, Marin L Gantner, Nigel A Calcutt, Christian M Metallo | Nature | 2023-01-25 | Abstract | |
| Deep-learning optimized DEOCSU suite provides an iterable pipeline for accurate ChIP-exo peak calling. | Ina Bang, Sang-Mok Lee, Seojoung Park, Joon Young Park, Linh Khanh Nong, Ye Gao, Bernhard O Palsson, Donghyuk Kim | Briefings In Bioinformatics | 2023-01-25 | Abstract | |
| Integrated Multi-Cohort Analysis of the Parkinson's Disease Gut Metagenome. | Joseph C Boktor, Gil Sharon, Leo A Verhagen Metman, Deborah A Hall, Phillip A Engen, Zoe Zreloff, Daniel J Hakim, John W Bostick, James Ousey, Danielle Lange, Gregory Humphrey, Gail Ackermann, Martha Carlin, Rob Knight, Ali Keshavarzian, Sarkis K Mazmanian | Movement Disorders : Official Journal Of The Movement Disorder Society | 2023-01-24 | Abstract | |
| Hepatic pIgR-mediated secretion of IgA limits bacterial translocation and prevents ethanol-induced liver disease in mice. | Tim Hendrikx, Sonja Lang, Dragana Rajcic, Yanhan Wang, Sara McArdle, Kenneth Kim, Zbigniew Mikulski, Bernd Schnabl | Gut | 2023-01-23 | Abstract | |
| Comprehensive evaluation of shotgun metagenomics, amplicon sequencing, and harmonization of these platforms for epidemiological studies. | Mykhaylo Usyk, Brandilyn A Peters, Smruthi Karthikeyan, Daniel McDonald, Christopher C Sollecito, Yoshiki Vazquez-Baeza, Justin P Shaffer, Marc D Gellman, Gregory A Talavera, Martha L Daviglus, Bharat Thyagarajan, Rob Knight, Qibin Qi, Robert Kaplan, Robert D Burk | Cell Reports Methods | 2023-01-23 | Abstract | |
| Safety and Efficacy of Ceftolozane/Tazobactam Versus Meropenem in Neonates and Children With Complicated Urinary Tract Infection, Including Pyelonephritis: A Phase 2, Randomized Clinical Trial. | Emmanuel Roilides, Negar Ashouri, John S Bradley, Matthew G Johnson, Julia Lonchar, Feng-Hsiu Su, Jennifer A Huntington, Myra W Popejoy, Mekki Bensaci, Carisa De Anda, Elizabeth G Rhee, Christopher J Bruno | The Pediatric Infectious Disease Journal | 2023-01-23 | Abstract | |
| Predictors of COVID-19 vaccine uptake among people who inject drugs. | Steffanie A Strathdee, Daniela Abramovitz, Carlos F Vera, Irina Artamonova, Thomas L Patterson, Davey M Smith, Antoine Chaillon, Angela R Bazzi | Vaccine | 2023-01-23 | Abstract | |
| A tissue atlas of ulcerative colitis revealing evidence of sex-dependent differences in disease-driving inflammatory cell types and resistance to TNF inhibitor therapy. | Aaron T Mayer, Derek R Holman, Anav Sood, Utkarsh Tandon, Salil S Bhate, Sunil Bodapati, Graham L Barlow, Jeff Chang, Sarah Black, Erica C Crenshaw, Alexander N Koron, Sarah E Streett, Sanjiv S Gambhir, William J Sandborn, Brigid S Boland, Trevor Hastie, Robert Tibshirani, John T Chang, Garry P Nolan, Christian M Schürch, Stephan Rogalla | Science Advances | 2023-01-20 | Abstract | |
| Model-driven experimental design workflow expands understanding of regulatory role of Nac in . | Joon Young Park, Sang-Mok Lee, Ali Ebrahim, Zoe K Scott-Nevros, Jaehyung Kim, Laurence Yang, Anand Sastry, Sang Woo Seo, Bernhard O Palsson, Donghyuk Kim | NAR Genomics And Bioinformatics | 2023-01-20 | Abstract | |
| Detection of Bacteria in Bladder Mucosa of Adult Females. | Alan J Wolfe, David J Rademacher, Carine R Mores, Robert J Evans, Tyler Overholt, Thomas Halverson, Roberto Limeira, Catherine Matthews, Gopal Badlani, Linda Brubaker, Stephen J Walker | The Journal Of Urology | 2023-01-19 | Abstract | |
| Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research. | Jack A Gilbert, Irene L G Newton, Gemma Reguera | MSystems | 2023-01-19 | Abstract | |
| Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research. | Jack A Gilbert, Irene L G Newton, Gemma Reguera | Applied And Environmental Microbiology | 2023-01-19 | Abstract | |
| Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research. | Jack A Gilbert, Irene L G Newton, Gemma Reguera | Microbiology Resource Announcements | 2023-01-19 | Abstract | |
| Association of subjective and objective measures of sleep with gut microbiota composition and diversity in older men: The Osteoporotic Fractures in Men (MrOS) study. | Mehrbod Estaki, Lisa Langsetmo, Michelle Shardell, Anna Mischel, Lingjing Jiang, Yuan Zhong, Christopher Kaufmann, Rob Knight, Katie Stone, Deborah Kado | The Journals Of Gerontology. Series A, Biological Sciences And Medical Sciences | 2023-01-19 | Abstract | |
| Ablation of Adar1 in myeloid cells imprints a global antiviral state in the lung and heightens early immunity against SARS-CoV-2. | Julia Z Adamska, Rohit Verma, Shakti Gupta, Thomas Hagan, Florian Wimmers, Katharine Floyd, Qin Li, Erika V Valore, Yanli Wang, Meera Trisal, José G Vilches-Moure, Shankar Subramaniam, Carl R Walkley, Mehul S Suthar, Jin Billy Li, Bali Pulendran | Cell Reports | 2023-01-17 | Abstract | |
| Cataloging natural sialic acids and other nonulosonic acids (NulOs), and their representation using the Symbol Nomenclature for Glycans. | Amanda L Lewis, Philip Toukach, Evan Bolton, Xi Chen, Martin Frank, Thomas Lütteke, Yuriy Knirel, Ian Schoenhofen, Ajit Varki, Evgeny Vinogradov, Robert J Woods, Natasha Zachara, Jian Zhang, Johannis P Kamerling, Sriram Neelamegham, | Glycobiology | 2023-01-15 | Abstract | |
| Stability of the fecal and oral microbiome over two years at -80°C for multiple collection methods. | Semi Zouiouich, Doratha A Byrd, Xing Hua, Smriti Karwa, Yunhu Wan, Jianxin Shi, Gregory C Humphrey, Gail L Ackermann, Rob Knight, Christian C Abnet, Emily Vogtmann, Rashmi Sinha | Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology | 2023-01-13 | Abstract | |
| Any alcohol use in NAFLD patients is associated with significant changes to the intestinal virome. | Cynthia L Hsu, Sonja Lang, Münevver Demir, Derrick E Fouts, Peter Stärkel, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2023-01-13 | Abstract | |
| Genomic and Spectroscopic Signature-Based Discovery of Natural Macrolactams. | Yern-Hyerk Shin, Ji Hyeon Im, Ilnam Kang, Eunji Kim, Sung Chul Jang, Eunji Cho, Daniel Shin, Sunghoon Hwang, Young Eun Du, Thanh-Hau Huynh, Keebeom Ko, Yoon-Joo Ko, Sang-Jip Nam, Takayoshi Awakawa, Jeeyeon Lee, Suckchang Hong, Ikuro Abe, Bradley S Moore, William Fenical, Yeo Joon Yoon, Jang-Cheon Cho, Sang Kook Lee, Ki-Bong Oh, Dong-Chan Oh | Journal Of The American Chemical Society | 2023-01-12 | Abstract | |
| Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an Model for Cheese Communities. | Christina C Saak, Emily C Pierce, Cong B Dinh, Daniel Portik, Richard Hall, Meredith Ashby, Rachel J Dutton | MSystems | 2023-01-09 | Abstract | |
| Comprehensive whole genome sequencing with hybrid assembly of multi-drug resistant isolate causing cerebral abscess. | Monika Kumaraswamy, Alison Coady, Richard Szubin, Thomas Cs Martin, Bernhard Palsson, Victor Nizet, Jonathan M Monk | Current Research In Microbial Sciences | 2023-01-09 | Abstract | |
| Interactions between perceived stress and microbial-host immune components: two demographically and geographically distinct pregnancy cohorts. | Beatriz Peñalver Bernabé, Pauline M Maki, Janet L Cunningham, Tory Eisenlohr-Moul, Lisa Tussing-Humphreys, Ian M Carroll, Samantha Meltzer-Brody, Jack A Gilbert, Mary Kimmel | Translational Psychiatry | 2023-01-06 | Abstract | |
| Stability, robustness, and containment: preparing synthetic biology for real-world deployment. | Shalni Kumar, Jeff Hasty | Current Opinion In Biotechnology | 2023-01-06 | Abstract | |
| Residential green environments are associated with human milk oligosaccharide diversity and composition. | Mirkka Lahdenperä, Laura Galante, Carlos Gonzales-Inca, Jussi Vahtera, Jaana Pentti, Samuli Rautava, Niina Käyhkö, Chloe Yonemitsu, Julia Gupta, Lars Bode, Hanna Lagström | Scientific Reports | 2023-01-05 | Abstract | |
| Wastewater surveillance for public health. | Joshua I Levy, Kristian G Andersen, Rob Knight, Smruthi Karthikeyan | Science (New York, N.Y.) | 2023-01-05 | Abstract | |
| Natural killer cells for antiviral therapy. | Davey M Smith, Jolie R Schafer, Brian Tullius, Laura Witkam, Silke Paust | Science Translational Medicine | 2023-01-04 | Abstract | |
| Can a mucosal microbiota signature predict disease severity, survival, and disease recurrence in PSC? | Phillipp Hartmann, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2023-01-03 | Abstract | |
| Mutualism-enhancing mutations dominate early adaptation in a two-species microbial community. | Sandeep Venkataram, Huan-Yu Kuo, Erik F Y Hom, Sergey Kryazhimskiy | Nature Ecology & Evolution | 2023-01-02 | Abstract | |
| Cocirculation and replacement of SARS-CoV-2 variants in crowded settings and marginalized populations along the US-Mexico border. | Antoine Chaillon, Ietza Bojorquez, Jaime Sepúlveda, Alicia Yolanda Harvey-Vera, M Gudelia Rangel, Britt Skaathun, Sanjay R Mehta, Caroline Ignacio, Magali Porrachia, Davey M Smith, Steffanie A Strathdee | Salud Publica De Mexico | 2023-01-02 | Abstract | |
| Higher-order interactions shape microbial interactions as microbial community complexity increases. | Manon A Morin, Anneliese J Morrison, Michael J Harms, Rachel J Dutton | Scientific Reports | 2022-12-31 | Abstract | |
| Antiviral therapy use and related outcomes in patients with cancer and viral infections: results from SWOG S1204. | Jessica P Hwang, Kathryn B Arnold, Joseph M Unger, Rashmi Chugh, Monica A Tincopa, Rohit Loomba, Dawn Hershman, Scott D Ramsey | Supportive Care In Cancer : Official Journal Of The Multinational Association Of Supportive Care In Cancer | 2022-12-31 | Abstract | |
| Mitigating Infectious morbidity and Growth deficits in HIV-exposed uninfected infanTs with human Milk Oligosaccharide (MIGH-T MO): a randomised trial protocol. | Rupak Shivakoti, Amy L Slogrove, Barbara Laughton, Mehr Shafiq, Elisma Schoeman, Richard H Glashoff, Cheng-Shiun Leu, Shuang Wang, Lars Bode, Grace Aldrovandi, Louise Kuhn | BMJ Open | 2022-12-30 | Abstract | |
| High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917. | Max van 't Hof, Omkar S Mohite, Jonathan M Monk, Tilmann Weber, Bernhard O Palsson, Morten O A Sommer | BMC Bioinformatics | 2022-12-30 | Abstract | |
| Breastfeeding enrichment of B. longum subsp. infantis mitigates the effect of antibiotics on the microbiota and childhood asthma risk. | Darlene L Y Dai, Charisse Petersen, Courtney Hoskinson, Kate L Del Bel, Allan B Becker, Theo J Moraes, Piushkumar J Mandhane, B Brett Finlay, Elinor Simons, Anita L Kozyrskyj, David M Patrick, Padmaja Subbarao, Lars Bode, Meghan B Azad, Stuart E Turvey | Med (New York, N.Y.) | 2022-12-29 | Abstract | |
| The gut microbiome is a significant risk factor for future chronic lung disease. | Yang Liu, Shu Mei Teo, Guillaume Meric, Howard H F Tang, Qiyun Zhu, Jon G Sanders, Yoshiki Vazquez-Baeza, Karin Verspoor, Ville A Vartiainen, Pekka Jousilahti, Leo Lahti, Teemu Niiranen, Aki S Havulinna, Rob Knight, Veikko Salomaa, Michael Inouye | The Journal Of Allergy And Clinical Immunology | 2022-12-29 | Abstract | |
| SREBP signaling is essential for effective B cell responses. | Wei Luo, Julia Z Adamska, Chunfeng Li, Rohit Verma, Qing Liu, Thomas Hagan, Florian Wimmers, Shakti Gupta, Yupeng Feng, Wenxia Jiang, Jiehao Zhou, Erika Valore, Yanli Wang, Meera Trisal, Shankar Subramaniam, Timothy F Osborne, Bali Pulendran | Nature Immunology | 2022-12-28 | Abstract | |
| In vitro Activity of Ceftaroline Against an International Collection of Kingella kingae Isolates Recovered From Carriers and Invasive Infections. | Joshua M Maher, Rodrigo E Mendes, Holly K Huynh, Eric A Porsch, Joseph W St Geme Iii, Pablo Yagupsky, John Bradley | The Pediatric Infectious Disease Journal | 2022-12-28 | Abstract | |
| Safety and microbiological activity of phage therapy in persons with cystic fibrosis colonized with Pseudomonas aeruginosa: study protocol for a phase 1b/2, multicenter, randomized, double-blind, placebo-controlled trial. | Pranita D Tamma, Maria Souli, Michael Billard, Joseph Campbell, Douglas Conrad, Damon W Ellison, Beth Evans, Scott R Evans, Kerryl E Greenwood-Quaintance, Andrey A Filippov, Holly S Geres, Toshimitsu Hamasaki, Lauren Komarow, Mikeljon P Nikolich, Thomas P Lodise, Seema U Nayak, Carmelle Norice-Tra, Robin Patel, David Pride, Janie Russell, Daria Van Tyne, Henry F Chambers, Vance G FowlerJr, Robert T Schooley, | Trials | 2022-12-28 | Abstract | |
| Quantifying (non)parallelism of gut microbial community change using multivariate vector analysis. | Andreas Härer, Diana J Rennison | Ecology And Evolution | 2022-12-28 | Abstract | |
| Predicting stress response and improved protein overproduction in Bacillus subtilis. | Juan D Tibocha-Bonilla, Cristal Zuñiga, Asama Lekbua, Colton Lloyd, Kevin Rychel, Katie Short, Karsten Zengler | NPJ Systems Biology And Applications | 2022-12-27 | Abstract | |
| The RISE FOR HEALTH study: Methods for in-person assessment and biospecimen collection. | Linda Brubaker, Julia Barthold, Colleen M Fitzgerald, Kimberly Kenton, Cora E Lewis, Jerry Lowder, Emily S Lukacz, Alayne Markland, Melanie Meister, Janis Miller, Elizabeth R Mueller, Kyle Rudser, Ariana L Smith, Diane K Newman, | Neurourology And Urodynamics | 2022-12-27 | Abstract | |
| Minireview: Engineering evolution to reconfigure phenotypic traits in microbes for biotechnological applications. | Kangsan Kim, Minjeong Kang, Sang-Hyeok Cho, Eojin Yoo, Ui-Gi Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | Computational And Structural Biotechnology Journal | 2022-12-24 | Abstract | |
| Association between inflammation, reward processing, and ibuprofen-induced increases of miR-23b in astrocyte-enriched extracellular vesicles: A randomized, placebo-controlled, double-blind, exploratory trial in healthy individuals. | Kaiping Burrows, Leandra K Figueroa-Hall, Ahlam M Alarbi, Jennifer L Stewart, Rayus Kuplicki, Chibing Tan, Bethany N Hannafon, Rajagopal Ramesh, Jonathan Savitz, Sahib Khalsa, T Kent Teague, Victoria B Risbrough, Martin P Paulus | Brain, Behavior, & Immunity - Health | 2022-12-24 | Abstract | |
| SARS-CoV-2 spike conformation determines plasma neutralizing activity elicited by a wide panel of human vaccines. | John E Bowen, Young-Jun Park, Cameron Stewart, Jack T Brown, William K Sharkey, Alexandra C Walls, Anshu Joshi, Kaitlin R Sprouse, Matthew McCallum, M Alejandra Tortorici, Nicholas M Franko, Jennifer K Logue, Ignacio G Mazzitelli, Annalee W Nguyen, Rui P Silva, Yimin Huang, Jun Siong Low, Josipa Jerak, Sasha W Tiles, Kumail Ahmed, Asefa Shariq, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Gyorgy Snell, Christine M Posavad, Najeeha Talat Iqbal, Jorge Geffner, Alessandra Bandera, Andrea Gori, Federica Sallusto, Jennifer A Maynard, Shane Crotty, Wesley C Van Voorhis, Carlos Simmerling, Renata Grifantini, Helen Y Chu, Davide Corti, David Veesler | Science Immunology | 2022-12-23 | Abstract | |
| Healthy dietary patterns are associated with the gut microbiome in the Hispanic Community Health Study/Study of Latinos. | Brandilyn A Peters, Jiaqian Xing, Guo-Chong Chen, Mykhaylo Usyk, Zheng Wang, Amanda C McClain, Bharat Thyagarajan, Martha L Daviglus, Daniela Sotres-Alvarez, Frank B Hu, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi | The American Journal Of Clinical Nutrition | 2022-12-22 | Abstract | |
| Bamlanivimab therapy for acute COVID-19 does not blunt SARS-CoV-2-specific memory T cell responses. | Sydney I Ramirez, Alba Grifoni, Daniela Weiskopf, Urvi M Parikh, Amy Heaps, Farhoud Faraji, Scott F Sieg, Justin Ritz, Carlee Moser, Joseph J Eron, Judith S Currier, Paul Klekotka, Alessandro Sette, David A Wohl, Eric S Daar, Michael D Hughes, Kara W Chew, Davey M Smith, Shane Crotty, | JCI Insight | 2022-12-22 | Abstract | |
| Fungal infections and the fungal microbiome in hepatobiliary disorders. | Phillipp Hartmann, Bernd Schnabl | Journal Of Hepatology | 2022-12-21 | Abstract | |
| Conservation of Nematocida microsporidia gene expression and host response in Caenorhabditis nematodes. | Yin Chen Wan, Emily R Troemel, Aaron W Reinke | PloS One | 2022-12-19 | Abstract | |
| ConCISE: Consensus Annotation Propagation of Ion Features in Untargeted Tandem Mass Spectrometry Combining Molecular Networking and Metabolite Structure Prediction. | Zachary A Quinlan, Irina Koester, Allegra T Aron, Daniel Petras, Lihini I Aluwihare, Pieter C Dorrestein, Craig E Nelson, Linda Wegley Kelly | Metabolites | 2022-12-16 | Abstract | |
| Peptide Amphiphile Mediated Co-assembly for Nanoplasmonic Sensing. | Zhicheng Jin, Yi Li, Ke Li, Jiajing Zhou, Justin Yeung, Chuxuan Ling, Wonjun Yim, Tengyu He, Yong Cheng, Ming Xu, Matthew N Creyer, Yu-Ci Chang, Pavla Fajtová, Maurice Retout, Baiyan Qi, Shuzhou Li, Anthony J O'Donoghue, Jesse V Jokerst | Angewandte Chemie (International Ed. In English) | 2022-12-15 | Abstract | |
| Exploring the value of a global gene drive project registry. | Riley I Taitingfong, Cynthia Triplett, Váleri N Vásquez, Ramya M Rajagopalan, Robyn Raban, Aaron Roberts, Gerard Terradas, Bridget Baumgartner, Claudia Emerson, Fred Gould, Fredros Okumu, Cynthia E Schairer, Hervé C Bossin, Leah Buchman, Karl J Campbell, Anna Clark, Jason Delborne, Kevin Esvelt, Joshua Fisher, Robert M Friedman, Gigi Gronvall, Nikos Gurfield, Elizabeth Heitman, Natalie Kofler, Todd Kuiken, Jennifer Kuzma, Pablo Manrique-Saide, John M Marshall, Michael Montague, Amy C Morrison, Chris C Opesen, Ryan Phelan, Antoinette Piaggio, Hector Quemada, Larisa Rudenko, Natéwindé Sawadogo, Robert Smith, Holly Tuten, Anika Ullah, Adam Vorsino, Nikolai Windbichler, Omar S Akbari, Kanya Long, James V Lavery, Sam Weiss Evans, Karen Tountas, Cinnamon S Bloss | Nature Biotechnology | 2022-12-15 | Abstract | |
| Deep Dive into the Long Haul: Analysis of Symptom Clusters and Risk Factors for Post-Acute Sequelae of COVID-19 to Inform Clinical Care. | Nicole H Goldhaber, Jordan N Kohn, William Scott Ogan, Amy Sitapati, Christopher A Longhurst, Angela Wang, Susan Lee, Suzi Hong, Lucy E Horton | International Journal Of Environmental Research And Public Health | 2022-12-15 | Abstract | |
| Potentially probiotic Limosilactobacillus reuteri from human milk strengthens the gut barrier in T84 cells and a murine enteroid model. | Jasia Anjum, Andrew Quach, Preedajit Wongkrasant, Shahid Nazir, Muhammad Tariq, Kim E Barrett, Arsalan Zaidi | Journal Of Applied Microbiology | 2022-12-14 | Abstract | |
| Concurrent validity and reliability of at-home teleneuropsychological evaluations among people with and without HIV. | Maulika Kohli, Arin Fisher, Ni Sun-Suslow, Anne Heaton, Matthew S Dawson, Jennifer Marquie, Donald R Franklin, Maria Marquine, Jennifer E Iudicello, Robert K Heaton, David J Moore | Journal Of The International Neuropsychological Society : JINS | 2022-12-13 | Abstract | |
| Stool multi-omics for the study of host-microbe interactions in inflammatory bowel disease. | Consuelo Sauceda, Charlie Bayne, Khadijeh Sudqi, Antonio Gonzalez, Parambir S Dulai, Rob Knight, David J Gonzalez, Carlos G Gonzalez | Gut Microbes | 2022-12-12 | Abstract | |
| Revealing Causes for False-Positive and False-Negative Calling of Gene Essentiality in Escherichia coli Using Transposon Insertion Sequencing. | Donghui Choe, Uigi Kim, Soonkyu Hwang, Sang Woo Seo, Donghyuk Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | MSystems | 2022-12-12 | Abstract | |
| Comparison of bacterial suppression by phage cocktails, dual-receptor generalists, and coevolutionarily trained phages. | Joshua M Borin, Justin J Lee, Krista R Gerbino, Justin R Meyer | Evolutionary Applications | 2022-12-09 | Abstract | |
| Host-microbiome interactions in the holobiome of Atopic Dermatitis. | Elise Burger, Richard Gallo | The Journal Of Allergy And Clinical Immunology | 2022-12-09 | Abstract | |
| Effects of Variation in Urine Sample Storage Conditions on 16S Urogenital Microbiome Analyses. | Tanya Kumar, MacKenzie Bryant, Kalen Cantrell, Se Jin Song, Daniel McDonald, Helena M Tubb, Sawyer Farmer, Emily S Lukacz, Linda Brubaker, Rob Knight | MSystems | 2022-12-08 | Abstract | |
| Breathing and Tilting: Mesoscale Simulations Illuminate Influenza Glycoprotein Vulnerabilities. | Lorenzo Casalino, Christian Seitz, Julia Lederhofer, Yaroslav Tsybovsky, Ian A Wilson, Masaru Kanekiyo, Rommie E Amaro | ACS Central Science | 2022-12-08 | Abstract | |
| A Reproducible and Tunable Synthetic Soil Microbial Community Provides New Insights into Microbial Ecology. | Joanna Coker, Kateryna Zhalnina, Clarisse Marotz, Deepan Thiruppathy, Megan Tjuanta, Gavin D'Elia, Rodas Hailu, Talon Mahosky, Meagan Rowan, Trent R Northen, Karsten Zengler | MSystems | 2022-12-06 | Abstract | |
| Multicenter Evaluation of the Cepheid Xpert GBS LB XC Test. | Phyu M Thwe, Matthew L Faron, David T Pride, Amorina Cruz, Derek Gerstbrein, Karen A Nahmod, Lindsay Bigham, Xiaotang Du, Xixi Lu, Stephanie Moya, Ping Ren | Journal Of Clinical Microbiology | 2022-12-06 | Abstract | |
| Vaccination induces HIV broadly neutralizing antibody precursors in humans. | David J Leggat, Kristen W Cohen, Jordan R Willis, William J Fulp, Allan C deCamp, Oleksandr Kalyuzhniy, Christopher A Cottrell, Sergey Menis, Greg Finak, Lamar Ballweber-Fleming, Abhinaya Srikanth, Jason R Plyler, Torben Schiffner, Alessia Liguori, Farhad Rahaman, Angela Lombardo, Vincent Philiponis, Rachael E Whaley, Aaron Seese, Joshua Brand, Alexis M Ruppel, Wesley Hoyland, Nicole L Yates, LaTonya D Williams, Kelli Greene, Hongmei Gao, Celia R Mahoney, Martin M Corcoran, Alberto Cagigi, Alison Taylor, David M Brown, David R Ambrozak, Troy Sincomb, Xiaozhen Hu, Ryan Tingle, Erik Georgeson, Saman Eskandarzadeh, Nushin Alavi, Danny Lu, Tina-Marie Mullen, Michael Kubitz, Bettina Groschel, Janine Maenza, Orpheus Kolokythas, Nadia Khati, Jeffrey Bethony, Shane Crotty, Mario Roederer, Gunilla B Karlsson Hedestam, Georgia D Tomaras, David Montefiori, David Diemert, Richard A Koup, Dagna S Laufer, M Juliana McElrath, Adrian B McDermott, William R Schief | Science (New York, N.Y.) | 2022-12-02 | Abstract | |
| Plant and fungal species interactions differ between aboveground and belowground habitats in mountain forests of eastern China. | Teng Yang, Leho Tedersoo, Pamela S Soltis, Douglas E Soltis, Miao Sun, Yuying Ma, Yingying Ni, Xu Liu, Xiao Fu, Yu Shi, Han-Yang Lin, Yun-Peng Zhao, Chengxin Fu, Chuan-Chao Dai, Jack A Gilbert, Haiyan Chu | Science China. Life Sciences | 2022-12-01 | Abstract | |
| Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2022 Recommendations of the International Antiviral Society-USA Panel. | Rajesh T Gandhi, Roger Bedimo, Jennifer F Hoy, Raphael J Landovitz, Davey M Smith, Ellen F Eaton, Clara Lehmann, Sandra A Springer, Paul E Sax, Melanie A Thompson, Constance A Benson, Susan P Buchbinder, Carlos Del Rio, Joseph J Eron, Huldrych F Günthard, Jean-Michel Molina, Donna M Jacobsen, Michael S Saag | JAMA | 2022-12-01 | Abstract | |
| A self-powered ingestible wireless biosensing system for real-time in situ monitoring of gastrointestinal tract metabolites. | Ernesto De la Paz, Nikhil Harsha Maganti, Alexander Trifonov, Itthipon Jeerapan, Kuldeep Mahato, Lu Yin, Thitaporn Sonsa-Ard, Nicolas Ma, Won Jung, Ryan Burns, Amir Zarrinpar, Joseph Wang, Patrick P Mercier | Nature Communications | 2022-12-01 | Abstract | |
| A high-protein diet prevents weight regain. | Amir Zarrinpar | Nature Metabolism | 2022-12-01 | Abstract | |
| ChiMera: an easy to use pipeline for bacterial genome based metabolic network reconstruction, evaluation and visualization. | Gustavo Tamasco, Manish Kumar, Karsten Zengler, Rafael Silva-Rocha, Ricardo Roberto da Silva | BMC Bioinformatics | 2022-11-30 | Abstract | |
| Clinical Outcomes of Omicron Variant (B.1.1.529) Infection in Children and Adolescents Hospitalized With COVID-19 in Brazil With Observational Data on the Efficacy of the Vaccines in Adolescents. | Eduardo A Oliveira, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Ludmila R Silva, Daniella B Martelli, Clara C Pinhati, Hercílio Martelli-Júnior | The Pediatric Infectious Disease Journal | 2022-11-29 | Abstract | |
| Culture-Independent Detection and Identification of Serovars. | Michael A Matthias, Aristea A Lubar, Shalka S Lanka Acharige, Kira L Chaiboonma, Nicholas N Pilau, Alan S Marroquin, Dinesha Jayasundara, Suneth Agampodi, Joseph M Vinetz | Microbiology Spectrum | 2022-11-29 | Abstract | |
| The human pathobiont secreted protease Mfsap1 regulates cell dispersal and exacerbates skin inflammation. | Joleen P Z Goh, Fiorella Ruchti, Si En Poh, Winston L C Koh, Kiat Yi Tan, Yan Ting Lim, Steven T G Thng, Radoslaw M Sobota, Shawn S Hoon, Chenxi Liu, Anthony J O'Donoghue, Salomé LeibundGut-Landmann, Hazel H Oon, Hao Li, Thomas L Dawson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-11-29 | Abstract | |
| Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity. | Justin P Shaffer, Louis-Félix Nothias, Luke R Thompson, Jon G Sanders, Rodolfo A Salido, Sneha P Couvillion, Asker D Brejnrod, Franck Lejzerowicz, Niina Haiminen, Shi Huang, Holly L Lutz, Qiyun Zhu, Cameron Martino, James T Morton, Smruthi Karthikeyan, Mélissa Nothias-Esposito, Kai Dührkop, Sebastian Böcker, Hyun Woo Kim, Alexander A Aksenov, Wout Bittremieux, Jeremiah J Minich, Clarisse Marotz, MacKenzie M Bryant, Karenina Sanders, Tara Schwartz, Greg Humphrey, Yoshiki Vásquez-Baeza, Anupriya Tripathi, Laxmi Parida, Anna Paola Carrieri, Kristen L Beck, Promi Das, Antonio González, Daniel McDonald, Joshua Ladau, Søren M Karst, Mads Albertsen, Gail Ackermann, Jeff DeReus, Torsten Thomas, Daniel Petras, Ashley Shade, James Stegen, Se Jin Song, Thomas O Metz, Austin D Swafford, Pieter C Dorrestein, Janet K Jansson, Jack A Gilbert, Rob Knight, | Nature Microbiology | 2022-11-28 | Abstract | |
| Representative oral microbiome data for the US population: the National Health and Nutrition Examination Survey. | Emily Vogtmann, Anil K Chaturvedi, Martin J Blaser, Nicholas A Bokulich, J Gregory Caporaso, Maura L Gillison, Xing Hua, Autumn G Hullings, Rob Knight, Vaishnavi Purandare, Jianxin Shi, Yunhu Wan, Neal D Freedman, Christian C Abnet | The Lancet. Microbe | 2022-11-28 | Abstract | |
| Characterization of SARS-CoV-2 antibodies in human milk from 21 women with confirmed COVID-19 infection. | Lars Bode, Kerri Bertrand, Julia A Najera, Annalee Furst, Gordon Honerkamp-Smith, Adam D Shandling, Christina D Chambers, David Camerini, Joseph J Campo | Pediatric Research | 2022-11-25 | Abstract | |
| Species Capable of Growth at Pressures Ranging Over 5 Orders of Magnitude, from the Surface of Mars (10 Pa) to Deep Oceans (10 Pa) in the Solar System. | Kathleen M Miller, Flora Tang, Sixuan Li, Kelli K Mullane, Brontë R Shelton, Lam Bui, Douglas H Bartlett, Wayne L Nicholson | Astrobiology | 2022-11-24 | Abstract | |
| Urobiome changes differ based on OAB treatment in adult females. | Thomas Halverson, Elizabeth R Mueller, Linda Brubaker, Alan J Wolfe | International Urogynecology Journal | 2022-11-24 | Abstract | |
| The association between pre-existing asthma and reduced risk of death among children and adolescents hospitalized with COVID-19 in Brazil. | Maria C L Oliveira, Enrico A Colosimo, Mariana A Vasconcelos, Hercílio Martelli-Júnior, Robert H Mak, Ludmila R Silva, Clara C Pinhati, Ana C Simões E Silva, Eduardo A Oliveira | Pediatric Pulmonology | 2022-11-23 | Abstract | |
| Analyzing rare mutations in metagenomes assembled using long and accurate reads. | Marcus W Fedarko, Mikhail Kolmogorov, Pavel A Pevzner | Genome Research | 2022-11-23 | Abstract | |
| Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species. | Jeremiah J Minich, Andreas Härer, Joseph Vechinski, Benjamin W Frable, Zachary R Skelton, Emily Kunselman, Michael A Shane, Daniela S Perry, Antonio Gonzalez, Daniel McDonald, Rob Knight, Todd P Michael, Eric E Allen | Nature Communications | 2022-11-17 | Abstract | |
| NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters. | Tiago F Leão, Mingxun Wang, Ricardo da Silva, Alexey Gurevich, Anelize Bauermeister, Paulo Wender P Gomes, Asker Brejnrod, Evgenia Glukhov, Allegra T Aron, Joris J R Louwen, Hyun Woo Kim, Raphael Reher, Marli F Fiore, Justin J J van der Hooft, Lena Gerwick, William H Gerwick, Nuno Bandeira, Pieter C Dorrestein | PNAS Nexus | 2022-11-16 | Abstract | |
| On the illusion of auxotrophy: met15Δ yeast cells can grow on inorganic sulfur, thanks to the previously uncharacterized homocysteine synthase Yll058w. | S Branden Van Oss, Saurin Bipin Parikh, Nelson Castilho Coelho, Aaron Wacholder, Ivan Belashov, Sara Zdancewicz, Manuel Michaca, Jiazhen Xu, Yun Pyo Kang, Nathan P Ward, Sang Jun Yoon, Katherine M McCourt, Jake McKee, Trey Ideker, Andrew P VanDemark, Gina M DeNicola, Anne-Ruxandra Carvunis | The Journal Of Biological Chemistry | 2022-11-13 | Abstract | |
| Correlation between Serum Steroid Hormones and Gut Microbiota in Patients with Alcohol-Associated Liver Disease. | Bei Gao, Yixin Zhu, Weishou Shen, Peter Stärkel, Bernd Schnabl | Metabolites | 2022-11-13 | Abstract | |
| A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice. | Reem Abdel-Haq, Johannes C M Schlachetzki, Joseph C Boktor, Thaisa M Cantu-Jungles, Taren Thron, Mengying Zhang, John W Bostick, Tahmineh Khazaei, Sujatha Chilakala, Livia H Morais, Greg Humphrey, Ali Keshavarzian, Jonathan E Katz, Matthew Thomson, Rob Knight, Viviana Gradinaru, Bruce R Hamaker, Christopher K Glass, Sarkis K Mazmanian | ELife | 2022-11-08 | Abstract | |
| Spacer Matters: All-Peptide-Based Ligand for Promoting Interfacial Proteolysis and Plasmonic Coupling. | Zhicheng Jin, Chuxuan Ling, Yi Li, Jiajing Zhou, Ke Li, Wonjun Yim, Justin Yeung, Yu-Ci Chang, Tengyu He, Yong Cheng, Pavla Fajtová, Maurice Retout, Anthony J O'Donoghue, Jesse V Jokerst | Nano Letters | 2022-11-08 | Abstract | |
| RISE FOR HEALTH: Rationale and protocol for a prospective cohort study of bladder health in women. | Ariana L Smith, Kyle Rudser, Bernard L Harlow, Gerald McGwin, Julia Barthold, Sonya S Brady, Linda Brubaker, Shayna D Cunningham, James W Griffith, Kim Kenton, Heather Klusaritz, Cora E Lewis, Emily S Lukacz, Julia Maki, Alayne D Markland, Elizabeth R Mueller, Diane K Newman, Jesse Nodora, Leslie M Rickey, Todd Rockwood, Melissa Simon, Jean F Wyman, Siobhan Sutcliffe, | Neurourology And Urodynamics | 2022-11-02 | Abstract | |
| Mucosal and Systemic Responses to Severe Acute Respiratory Syndrome Coronavirus 2 Vaccination Determined by Severity of Primary Infection. | Mohammad M Sajadi, Amber Myers, James Logue, Saman Saadat, Narjes Shokatpour, James Quinn, Michelle Newman, Meagan Deming, Zahra Rikhtegaran Tehrani, Laurence S Magder, Maryam Karimi, Abdolrahim Abbasi, Mike Shlyak, Lauren Baracco, Matthew B Frieman, Shane Crotty, Anthony D Harris | MSphere | 2022-11-02 | Abstract | |
| Coordination of CcpA and CodY Regulators in Staphylococcus aureus USA300 Strains. | Saugat Poudel, Ying Hefner, Richard Szubin, Anand Sastry, Ye Gao, Victor Nizet, Bernhard O Palsson | MSystems | 2022-11-02 | Abstract | |
| Pan-Genome Analysis of Transcriptional Regulation in Six Salmonella enterica Serovar Typhimurium Strains Reveals Their Different Regulatory Structures. | Yuan Yuan, Yara Seif, Kevin Rychel, Reo Yoo, Siddharth Chauhan, Saugat Poudel, Tahani Al-Bulushi, Bernhard O Palsson, Anand V Sastry | MSystems | 2022-11-01 | Abstract | |
| synDNA-a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing. | Livia S Zaramela, Megan Tjuanta, Oriane Moyne, Maxwell Neal, Karsten Zengler | MSystems | 2022-11-01 | Abstract | |
| Sex, puberty, and the gut microbiome. | Laura Sisk-Hackworth, Scott T Kelley, Varykina G Thackray | Reproduction (Cambridge, England) | 2022-11-01 | Abstract | |
| Drug transporters OAT1 and OAT3 have specific effects on multiple organs and gut microbiome as revealed by contextualized metabolic network reconstructions. | Neema Jamshidi, Sanjay K Nigam | Scientific Reports | 2022-10-31 | Abstract | |
| The rapidly evolving monkeypox epidemic: A call to action to leave no one behind. | Steffanie A Strathdee, Davey M Smith, Megan Halbrook, Placide Mbala-Kingebeni, Shira Abeles, Francesca Torriani, Anne Rimoin | PLoS Medicine | 2022-10-31 | Abstract | |
| Sarcopenia-related gut microbial changes are associated with the risk of complications in people with cirrhosis. | Pei-Chang Lee, Kuei-Chuan Lee, Tsung-Chieh Yang, Hsiao-Sheng Lu, Tsung-Yi Cheng, Yu-Jen Chen, Jen-Jie Chiou, Chi-Wei Huang, Ueng-Cheng Yang, Elise Chia-Hui Tan, Shih-Hsuan Chou, Yu-Lun Kuo, Bernd Schnabl, Yi-Hsiang Huang, Ming-Chih Hou | JHEP Reports : Innovation In Hepatology | 2022-10-29 | Abstract | |
| Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq. | Sara E Vazquez, Sabrina A Mann, Aaron Bodansky, Andrew F Kung, Zoe Quandt, Elise M N Ferré, Nils Landegren, Daniel Eriksson, Paul Bastard, Shen-Ying Zhang, Jamin Liu, Anthea Mitchell, Irina Proekt, David Yu, Caleigh Mandel-Brehm, Chung-Yu Wang, Brenda Miao, Gavin Sowa, Kelsey Zorn, Alice Y Chan, Veronica M Tagi, Chisato Shimizu, Adriana Tremoulet, Kara Lynch, Michael R Wilson, Olle Kämpe, Kerry Dobbs, Ottavia M Delmonte, Rosa Bacchetta, Luigi D Notarangelo, Jane C Burns, Jean-Laurent Casanova, Michail S Lionakis, Troy R Torgerson, Mark S Anderson, Joseph L DeRisi | ELife | 2022-10-27 | Abstract | |
| The Vi Capsular Polysaccharide of Salmonella Typhi Promotes Macrophage Phagocytosis by Binding the Human C-Type Lectin DC-SIGN. | Lillian F Zhang, Bernd Lepenies, Sayuri Nakamae, Briana M Young, Renato L Santos, Manuela Raffatellu, Brian A Cobb, Hirotaka Hiyoshi, Andreas J Bäumler | MBio | 2022-10-26 | Abstract | |
| Emergence of SARS-CoV-2 escape mutations during Bamlanivimab therapy in a phase II randomized clinical trial. | Manish C Choudhary, Kara W Chew, Rinki Deo, James P Flynn, James Regan, Charles R Crain, Carlee Moser, Michael D Hughes, Justin Ritz, Ruy M Ribeiro, Ruian Ke, Joan A Dragavon, Arzhang Cyrus Javan, Ajay Nirula, Paul Klekotka, Alexander L Greninger, Courtney V Fletcher, Eric S Daar, David A Wohl, Joseph J Eron, Judith S Currier, Urvi M Parikh, Scott F Sieg, Alan S Perelson, Robert W Coombs, Davey M Smith, Jonathan Z Li, | Nature Microbiology | 2022-10-26 | Abstract | |
| Abrogation of neutrophil inflammatory pathways and potential reduction of neutrophil-related factors in COVID-19 by intravenous immunoglobulin. | Jorge Adrian Masso-Silva, George Sakoulas, Jarod Olay, Victoria Groysberg, Matthew Geriak, Victor Nizet, Laura E Crotty Alexander, Angela Meier | Frontiers In Immunology | 2022-10-20 | Abstract | |
| Lessons for Understanding Central Nervous System HIV Reservoirs from the Last Gift Program. | Patricia K Riggs, Antoine Chaillon, Guochun Jiang, Scott L Letendre, Yuyang Tang, Jeff Taylor, Andrew Kaytes, Davey M Smith, Karine Dubé, Sara Gianella | Current HIV/AIDS Reports | 2022-10-19 | Abstract | |
| Anthrax Meningoencephalitis and Intracranial Hemorrhage. | Nicholas Caffes, Katherine Hendricks, John S Bradley, Nancy A Twenhafel, J Marc Simard | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-10-17 | Abstract | |
| Systematic Review of Hospital Treatment Outcomes for Naturally Acquired and Bioterrorism-Related Anthrax, 1880-2018. | Marissa K Person, Rachel Cook, John S Bradley, Nathaniel Hupert, William A Bower, Katherine Hendricks | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-10-17 | Abstract | |
| Inexpensive, Accurate, and Stable Method to Quantitate Blood Alanine Aminotransferase (ALT) Levels. | Phillipp Hartmann, Bernd Schnabl | Methods And Protocols | 2022-10-14 | Abstract | |
| Experimental Evolution Reveals Unifying Systems-Level Adaptations but Diversity in Driving Genotypes. | Erol S Kavvas, Christopher P Long, Anand Sastry, Saugat Poudel, Maciek R Antoniewicz, Yang Ding, Elsayed T Mohamed, Richard Szubin, Jonathan M Monk, Adam M Feist, Bernhard O Palsson | MSystems | 2022-10-13 | Abstract | |
| Illuminating the dark metabolome of Pseudo-nitzschia-microbiome associations. | Irina Koester, Zachary A Quinlan, Louis-Félix Nothias, Margot E White, Ariel Rabines, Daniel Petras, John K Brunson, Kai Dührkop, Marcus Ludwig, Sebastian Böcker, Farooq Azam, Andrew E Allen, Pieter C Dorrestein, Lihini I Aluwihare | Environmental Microbiology | 2022-10-12 | Abstract | |
| Allergen Content and Protease Activity in Milk Feeds from Mothers of Preterm Infants. | Kathleen Luskin, Diba Mortazavi, Sherry Bai-Tong, Kerri Bertrand, Christina Chambers, Keriann Schulkers-Escalante, Alla Ahmad, Stephanie Luedtke, Anthony J O'Donoghue, Majid Ghassemian, Bob Geng, Sandra L Leibel, Sydney A Leibel | Breastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine | 2022-10-12 | Abstract | |
| Transcriptomic profiling of sporadic Alzheimer's disease patients. | Andrew B Caldwell, Balaji G Anantharaman, Srinivasan Ramachandran, Phuong Nguyen, Qing Liu, Ivy Trinh, Douglas R Galasko, Paula A Desplats, Steven L Wagner, Shankar Subramaniam | Molecular Brain | 2022-10-12 | Abstract | |
| OAT, OATP, and MRP Drug Transporters and the Remote Sensing and Signaling Theory. | Sanjay K Nigam, Jeffry C Granados | Annual Review Of Pharmacology And Toxicology | 2022-10-07 | Abstract | |
| Regulatory T-cells and GARP expression are decreased in exercise-associated chikungunya viral arthritis flares. | John E Dobbs, Sarah R Tritsch, Liliana Encinales, Andres Cadena, Karol Suchowiecki, Gary Simon, Christopher Mores, Silvana Insignares, Vierys Patricia Villamil Orozco, Mirna Ospino, Lil Avendano Echavez, Carlos Andres Herrera Gomez, Yerlenis Galvis Crespo, Richard Amdur, Alberto David Cabana Jimenez, Carlos Alberto Perez Hernandez, Jennifer Carolina Martinez Zapata, Alfonso Sucerquia Hernandez, Paula Bruges Silvera, Wendy Rosales, Evelyn Mendoza, Estefanie Osorio-Llanes, Jairo Castellar, Dennys Jimenez, Dan M Cooper, Gary S Firestein, Karen Martins, Aileen Y Chang | Frontiers In Immunology | 2022-10-07 | Abstract | |
| Electrochemical potential enables dormant spores to integrate environmental signals. | Kaito Kikuchi, Leticia Galera-Laporta, Colleen Weatherwax, Jamie Y Lam, Eun Chae Moon, Emmanuel A Theodorakis, Jordi Garcia-Ojalvo, Gürol M Süel | Science (New York, N.Y.) | 2022-10-06 | Abstract | |
| Opposing roles of hepatic stellate cell subpopulations in hepatocarcinogenesis. | Aveline Filliol, Yoshinobu Saito, Ajay Nair, Dianne H Dapito, Le-Xing Yu, Aashreya Ravichandra, Sonakshi Bhattacharjee, Silvia Affo, Naoto Fujiwara, Hua Su, Qiuyan Sun, Thomas M Savage, John R Wilson-Kanamori, Jorge M Caviglia, LiKang Chin, Dongning Chen, Xiaobo Wang, Stefano Caruso, Jin Ku Kang, Amit Dipak Amin, Sebastian Wallace, Ross Dobie, Deqi Yin, Oscar M Rodriguez-Fiallos, Chuan Yin, Adam Mehal, Benjamin Izar, Richard A Friedman, Rebecca G Wells, Utpal B Pajvani, Yujin Hoshida, Helen E Remotti, Nicholas Arpaia, Jessica Zucman-Rossi, Michael Karin, Neil C Henderson, Ira Tabas, Robert F Schwabe | Nature | 2022-10-05 | Abstract | |
| AHR is a master regulator of diverse pathways in endogenous metabolism. | Jeffry C Granados, Kian Falah, Imhoi Koo, Ethan W Morgan, Gary H Perdew, Andrew D Patterson, Neema Jamshidi, Sanjay K Nigam | Scientific Reports | 2022-10-05 | Abstract | |
| Age-dependent aggregation of ribosomal RNA-binding proteins links deterioration in chromatin stability with challenges to proteostasis. | Julie Paxman, Zhen Zhou, Richard O'Laughlin, Yuting Liu, Yang Li, Wanying Tian, Hetian Su, Yanfei Jiang, Shayna E Holness, Elizabeth Stasiowski, Lev S Tsimring, Lorraine Pillus, Jeff Hasty, Nan Hao | ELife | 2022-10-04 | Abstract | |
| A pals-25 gain-of-function allele triggers systemic resistance against natural pathogens of C. elegans. | Spencer S Gang, Manish Grover, Kirthi C Reddy, Deevya Raman, Ya-Ting Chang, Damian C Ekiert, Michalis Barkoulas, Emily R Troemel | PLoS Genetics | 2022-10-03 | Abstract | |
| #COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. | Abigail Dommer, Lorenzo Casalino, Fiona Kearns, Mia Rosenfeld, Nicholas Wauer, Surl-Hee Ahn, John Russo, Sofia Oliveira, Clare Morris, Anthony Bogetti, Anda Trifan, Alexander Brace, Terra Sztain, Austin Clyde, Heng Ma, Chakra Chennubhotla, Hyungro Lee, Matteo Turilli, Syma Khalid, Teresa Tamayo-Mendoza, Matthew Welborn, Anders Christensen, Daniel Ga Smith, Zhuoran Qiao, Sai K Sirumalla, Michael O'Connor, Frederick Manby, Anima Anandkumar, David Hardy, James Phillips, Abraham Stern, Josh Romero, David Clark, Mitchell Dorrell, Tom Maiden, Lei Huang, John McCalpin, Christopher Woods, Alan Gray, Matt Williams, Bryan Barker, Harinda Rajapaksha, Richard Pitts, Tom Gibbs, John Stone, Daniel M Zuckerman, Adrian J Mulholland, Thomas Miller, Shantenu Jha, Arvind Ramanathan, Lillian Chong, Rommie E Amaro | The International Journal Of High Performance Computing Applications | 2022-10-02 | Abstract | |
| Transfer of antibiotics and their metabolites in human milk: implications for infant health and microbiota. | Sydney P Thomas, Erce Denizer, Simone Zuffa, Brookie M Best, Lars Bode, Christina D Chambers, Pieter C Dorrestein, George Y Liu, Jeremiah D Momper, Victor Nizet, Shirley M Tsunoda, Adriana H Tremoulet | Pharmacotherapy | 2022-10-01 | Abstract | |
| Targeted protein S-nitrosylation of ACE2 inhibits SARS-CoV-2 infection. | Chang-Ki Oh, Tomohiro Nakamura, Nathan Beutler, Xu Zhang, Juan Piña-Crespo, Maria Talantova, Swagata Ghatak, Dorit Trudler, Lauren N Carnevale, Scott R McKercher, Malina A Bakowski, Jolene K Diedrich, Amanda J Roberts, Ashley K Woods, Victor Chi, Anil K Gupta, Mia A Rosenfeld, Fiona L Kearns, Lorenzo Casalino, Namir Shaabani, Hejun Liu, Ian A Wilson, Rommie E Amaro, Dennis R Burton, John R Yates, Cyrus Becker, Thomas F Rogers, Arnab K Chatterjee, Stuart A Lipton | Nature Chemical Biology | 2022-09-29 | Abstract | |
| A Trait-Based Approach to Predicting Viral Host-Range Evolvability. | Hannah M Strobel, Elizabeth C Stuart, Justin R Meyer | Annual Review Of Virology | 2022-09-29 | Abstract | |
| The gastrointestinal and microbiome impact of a resistant starch blend from potato, banana, and apple fibers: A randomized clinical trial using smart caps. | Douglas Hanes, Brent Nowinski, Joseph J Lamb, Ilona A Larson, Daniel McDonald, Rob Knight, Se Jin Song, Noelle Patno | Frontiers In Nutrition | 2022-09-29 | Abstract | |
| Organic Anion Transporters (OAT) and Other SLC22 Transporters in Progression of Renal Cell Carcinoma. | Thomas C Whisenant, Sanjay K Nigam | Cancers | 2022-09-29 | Abstract | |
| Evolution of the ancestral mammalian karyotype and syntenic regions. | Joana Damas, Marco Corbo, Jaebum Kim, Jason Turner-Maier, Marta Farré, Denis M Larkin, Oliver A Ryder, Cynthia Steiner, Marlys L Houck, Shaune Hall, Lily Shiue, Stephen Thomas, Thomas Swale, Mark Daly, Jonas Korlach, Marcela Uliano-Silva, Camila J Mazzoni, Bruce W Birren, Diane P Genereux, Jeremy Johnson, Kerstin Lindblad-Toh, Elinor K Karlsson, Martin T Nweeia, Rebecca N Johnson, , Harris A Lewin | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-09-26 | Abstract | |
| Asymptomatic or symptomatic SARS-CoV-2 infection plus vaccination confers increased adaptive immunity to variants of concern. | Peifang Sun, Irene Ramos, Camila H Coelho, Alba Grifoni, Corey A Balinsky, Sindhu Vangeti, Alison Tarke, Nathaniel I Bloom, Vihasi Jani, Silvia J Jakubski, David A Boulifard, Elizabeth Cooper, Carl W Goforth, Jan Marayag, Amethyst Marrone, Edgar Nunez, Lindsey White, Chad K Porter, Victor A Sugiharto, Megan Schilling, Avinash S Mahajan, Charmagne Beckett, Alessandro Sette, Stuart C Sealfon, Shane Crotty, Andrew G Letizia | IScience | 2022-09-23 | Abstract | |
| Nanoparticle-modified microrobots for in vivo antibiotic delivery to treat acute bacterial pneumonia. | Fangyu Zhang, Jia Zhuang, Zhengxing Li, Hua Gong, Berta Esteban-Fernández de Ávila, Yaou Duan, Qiangzhe Zhang, Jiarong Zhou, Lu Yin, Emil Karshalev, Weiwei Gao, Victor Nizet, Ronnie H Fang, Liangfang Zhang, Joseph Wang | Nature Materials | 2022-09-22 | Abstract | |
| Candida albicans-specific Th17 cell-mediated response contributes to alcohol-associated liver disease. | Suling Zeng, Elisa Rosati, Carina Saggau, Berith Messner, Huikuan Chu, Yi Duan, Phillipp Hartmann, Yanhan Wang, Shengyun Ma, Wendy Jia Men Huang, Jihyung Lee, Sung Min Lee, Raquel Carvalho-Gontijo, Vivian Zhang, Joseph P Hoffmann, Jay K Kolls, Eyal Raz, David A Brenner, Tatiana Kisseleva, Salomé LeibundGut-Landmann, Petra Bacher, Peter Stärkel, Bernd Schnabl | Cell Host & Microbe | 2022-09-22 | Abstract | |
| Long-primed germinal centres with enduring affinity maturation and clonal migration. | Jeong Hyun Lee, Henry J Sutton, Christopher A Cottrell, Ivy Phung, Gabriel Ozorowski, Leigh M Sewall, Rebecca Nedellec, Catherine Nakao, Murillo Silva, Sara T Richey, Jonathan L Torre, Wen-Hsin Lee, Erik Georgeson, Michael Kubitz, Sam Hodges, Tina-Marie Mullen, Yumiko Adachi, Kimberly M Cirelli, Amitinder Kaur, Carolina Allers, Marissa Fahlberg, Brooke F Grasperge, Jason P Dufour, Faith Schiro, Pyone P Aye, Oleksandr Kalyuzhniy, Alessia Liguori, Diane G Carnathan, Guido Silvestri, Xiaoying Shen, David C Montefiori, Ronald S Veazey, Andrew B Ward, Lars Hangartner, Dennis R Burton, Darrell J Irvine, William R Schief, Shane Crotty | Nature | 2022-09-21 | Abstract | |
| Actinopolymorphols E and F, pyrazine alkaloids from a marine sediment-derived bacterium Streptomyces sp. | Sohee Kim, Prima F Hillman, Ji Young Lee, Juri Lee, Jihye Lee, Sun-Shin Cha, Dong-Chan Oh, Sang-Jip Nam, William Fenical | The Journal Of Antibiotics | 2022-09-15 | Abstract | |
| Strengthening of enterococcal biofilms by Esp. | Lindsey Spiegelman, Adrian Bahn-Suh, Elizabeth T Montaño, Ling Zhang, Greg L Hura, Kathryn A Patras, Amit Kumar, F Akif Tezcan, Victor Nizet, Susan E Tsutakawa, Partho Ghosh | PLoS Pathogens | 2022-09-14 | Abstract | |
| The Transcription Factor YY-1 Is an Essential Regulator of T Follicular Helper Cell Differentiation. | Simon Bélanger, Sonya Haupt, Brian L Freeman, Adam J Getzler, Huitian Diao, Matthew E Pipkin, Shane Crotty | Journal Of Immunology (Baltimore, Md. : 1950) | 2022-09-12 | Abstract | |
| Siderophore Immunization Restricted Colonization of Adherent-Invasive Escherichia coli and Ameliorated Experimental Colitis. | Romana R Gerner, Suzana Hossain, Artur Sargun, Kareem Siada, Grant J Norton, Tengfei Zheng, Wilma Neumann, Sean-Paul Nuccio, Elizabeth M Nolan, Manuela Raffatellu | MBio | 2022-09-12 | Abstract | |
| Development of host immune response to bacteriophage in a lung transplant recipient on adjunctive phage therapy for a multidrug resistant pneumonia. | Jennifer M Dan, Susan M Lehman, Rita Al-Kolla, Samuel Penziner, Kamyar Afshar, Gordon Yung, Eugene Golts, Nancy Law, Cathy Logan, Zsuzsanna Kovach, Gill Mearns, Robert T Schooley, Saima Aslam, Shane Crotty | The Journal Of Infectious Diseases | 2022-09-09 | Abstract | |
| Assembling a Reference Phylogenomic Tree of Bacteria and Archaea by Summarizing Many Gene Phylogenies. | Qiyun Zhu, Siavash Mirarab | Methods In Molecular Biology (Clifton, N.J.) | 2022-09-09 | Abstract | |
| Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References. | Daniel Hakim, Stephen Wandro, Karsten Zengler, Livia S Zaramela, Brent Nowinski, Austin Swafford, Qiyun Zhu, Se Jin Song, Antonio Gonzalez, Daniel McDonald, Rob Knight | MSystems | 2022-09-08 | Abstract | |
| A single-administration therapeutic interfering particle reduces SARS-CoV-2 viral shedding and pathogenesis in hamsters. | Sonali Chaturvedi, Nathan Beutler, Gustavo Vasen, Michael Pablo, Xinyue Chen, Giuliana Calia, Lauren Buie, Robert Rodick, Davey Smith, Thomas Rogers, Leor S Weinberger | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-09-08 | Abstract | |
| Heterogeneous multimeric metabolite ion species observed in LC-MS based metabolomics data sets. | Yasin El Abiead, Christoph Bueschl, Lisa Panzenboeck, Mingxun Wang, Maria Doppler, Bernhard Seidl, Jürgen Zanghellini, Pieter C Dorrestein, Gunda Koellensperger | Analytica Chimica Acta | 2022-09-08 | Abstract | |
| Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa. | Akanksha Rajput, Hannah Tsunemoto, Anand V Sastry, Richard Szubin, Kevin Rychel, Siddharth M Chauhan, Joe Pogliano, Bernhard O Palsson | Nucleic Acids Research | 2022-09-06 | Abstract | |
| Research gaps and opportunities in precision nutrition: an NIH workshop report. | Bruce Y Lee, José M Ordovás, Elizabeth J Parks, Cheryl A M Anderson, Albert-László Barabási, Steven K Clinton, Kayla de la Haye, Valerie B Duffy, Paul W Franks, Elizabeth M Ginexi, Kristian J Hammond, Erin C Hanlon, Michael Hittle, Emily Ho, Abigail L Horn, Richard S Isaacson, Patricia L Mabry, Susan Malone, Corby K Martin, Josiemer Mattei, Simin Nikbin Meydani, Lorene M Nelson, Marian L Neuhouser, Brendan Parent, Nicolaas P Pronk, Helen M Roche, Suchi Saria, Frank A J L Scheer, Eran Segal, Mary Ann Sevick, Tim D Spector, Linda B Van Horn, Krista A Varady, Venkata Saroja Voruganti, Marie F Martinez | The American Journal Of Clinical Nutrition | 2022-09-02 | Abstract | |
| -Acetyl Migration within the Sialic Acid Side Chain: A Mechanistic Study Using the Nanoreactor. | Lisa Oh, Yang Ji, Wanqing Li, Ajit Varki, Xi Chen, Lee-Ping Wang | Biochemistry | 2022-09-02 | Abstract | |
| Limited microbiome differences in captive and semi-wild primate populations consuming similar diets. | Sahana Kuthyar, Karli Watson, Shi Huang, Lauren J N Brent, Michael Platt, Julie Horvath, Janis Gonzalez-Martinez, Melween Martínez, Filipa Godoy-Vitorino, Rob Knight, Maria Gloria Dominguez-Bello, Katherine R Amato | FEMS Microbiology Ecology | 2022-09-01 | Abstract | |
| Hyponatremia in Patients With Multisystem Inflammatory Syndrome in Children. | Tatyana Mills, Aditi Trivedi, Adriana H Tremoulet, Daniel Hershey, Jane C Burns | The Pediatric Infectious Disease Journal | 2022-09-01 | Abstract | |
| Proof of Concept for the Detection with Custom Printed Electrodes of Enterobactin as a Marker of . | Alexandra Canciu, Andreea Cernat, Mihaela Tertis, Silvia Botarca, Madalina Adriana Bordea, Joseph Wang, Cecilia Cristea | International Journal Of Molecular Sciences | 2022-08-31 | Abstract | |
| SARS-CoV-2 Omicron Variant of Concern: Everything You Wanted to Know about Omicron but Were Afraid to Ask. | Dong Hoon Shin, Davey M Smith, Jun Yong Choi | Yonsei Medical Journal | 2022-08-31 | Abstract | |
| Introducing the "Microbiomes and Social Equity" Special Collection. | Sue Ishaq, Jack Gilbert | MSystems | 2022-08-29 | Abstract | |
| Location-specific signatures of Crohn's disease at a multi-omics scale. | Carlos G Gonzalez, Robert H Mills, Qiyun Zhu, Consuelo Sauceda, Rob Knight, Parambir S Dulai, David J Gonzalez | Microbiome | 2022-08-24 | Abstract | |
| Multi-omics analyses of airway host-microbe interactions in chronic obstructive pulmonary disease identify potential therapeutic interventions. | Zhengzheng Yan, Boxuan Chen, Yuqiong Yang, Xinzhu Yi, Mingyuan Wei, Gertrude Ecklu-Mensah, Mary M Buschmann, Haiyue Liu, Jingyuan Gao, Weijie Liang, Xiaomin Liu, Junhao Yang, Wei Ma, Zhenyu Liang, Fengyan Wang, Dandan Chen, Lingwei Wang, Weijuan Shi, Martin R Stampfli, Pan Li, Shenhai Gong, Xia Chen, Wensheng Shu, Emad M El-Omar, Jack A Gilbert, Martin J Blaser, Hongwei Zhou, Rongchang Chen, Zhang Wang | Nature Microbiology | 2022-08-22 | Abstract | |
| Antiviral and clinical activity of bamlanivimab in a randomized trial of non-hospitalized adults with COVID-19. | Kara W Chew, Carlee Moser, Eric S Daar, David A Wohl, Jonathan Z Li, Robert W Coombs, Justin Ritz, Mark Giganti, Arzhang Cyrus Javan, Yijia Li, Manish C Choudhary, Rinki Deo, Carlos Malvestutto, Paul Klekotka, Karen Price, Ajay Nirula, William Fischer, Veenu Bala, Ruy M Ribeiro, Alan S Perelson, Courtney V Fletcher, Joseph J Eron, Judith S Currier, , Michael D Hughes, Davey M Smith | Nature Communications | 2022-08-22 | Abstract | |
| SARS-CoV-2 and MERS-CoV Spike Protein Binding Studies Support Stable Mimic of Bound 9--Acetylated Sialic Acids. | Lisa Oh, Ajit Varki, Xi Chen, Lee-Ping Wang | Molecules (Basel, Switzerland) | 2022-08-20 | Abstract | |
| Structural Basis of Stereospecific Vanadium-Dependent Haloperoxidase Family Enzymes in Napyradiomycin Biosynthesis. | Percival Yang-Ting Chen, Sanjoy Adak, Jonathan R Chekan, David K Liscombe, Akimasa Miyanaga, Peter Bernhardt, Stefan Diethelm, Elisha N Fielding, Jonathan H George, Zachary D Miles, Lauren A M Murray, Taylor S Steele, Jaclyn M Winter, Joseph P Noel, Bradley S Moore | Biochemistry | 2022-08-19 | Abstract | |
| Discovery, classification, evolution and diversity of Siglecs. | Takashi Angata, Ajit Varki | Molecular Aspects Of Medicine | 2022-08-18 | Abstract | |
| Interdependence of Sebaceous Lipids and the Microbiome in Atopic Dermatitis. | Samia Almoughrabie, Richard L Gallo | The Journal Of Investigative Dermatology | 2022-08-16 | Abstract | |
| Comparison of the APAS Independence Automated Plate Reader System with the Manual Standard of Care for Processing Urine Culture Specimens. | Megan Chiu, Peiting Kuo, Khrissa Lecrone, Andrew Garcia, Ruohui Chen, Natalie E Quach, Xin M Tu, David T Pride | Microbiology Spectrum | 2022-08-16 | Abstract | |
| A Self-Immolative Fluorescent Probe for Selective Detection of SARS-CoV-2 Main Protease. | Ming Xu, Jiajing Zhou, Yong Cheng, Zhicheng Jin, Alex E Clark, Tengyu He, Wonjun Yim, Yi Li, Yu-Ci Chang, Zhuohong Wu, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Michael D Todd, Jesse V Jokerst | Analytical Chemistry | 2022-08-16 | Abstract | |
| Bicarbonate Effects on Antibacterial Immunity and Mucus Glycobiology in the Cystic Fibrosis Lung: A Review With Selected Experimental Observations. | Ruth Siew, Tzung-Lin Ou, Samira Dahesh, Kathryn Akong, Victor Nizet | Infectious Microbes & Diseases | 2022-08-16 | Abstract | |
| Design and validation of HIV peptide pools for detection of HIV-specific CD4+ and CD8+ T cells. | Rita Al-Kolla, Alba Grifoni, Shane Crotty, Alessandro Sette, Sara Gianella, Jennifer Dan | PloS One | 2022-08-16 | Abstract | |
| Nasal and Plasma Severe Acute Respiratory Syndrome Coronavirus 2 RNA Levels Are Associated With Timing of Symptom Resolution in the ACTIV-2 Trial of Nonhospitalized Adults With Coronavirus Disease 2019. | Yijia Li, Linda J Harrison, Kara W Chew, Judy S Currier, David A Wohl, Eric S Daar, Teresa H Evering, Ryan Wu, Mark Giganti, Justin Ritz, Arzhang Cyrus Javan, Robert W Coombs, Carlee Moser, Michael D Hughes, Joseph J Eron, Davey M Smith, Jonathan Z Li | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-08-15 | Abstract | |
| Structure-Based Identification of Naphthoquinones and Derivatives as Novel Inhibitors of Main Protease M and Papain-like Protease PL of SARS-CoV-2. | Lucianna H Santos, Thales Kronenberger, Renata G Almeida, Elany B Silva, Rafael E O Rocha, Joyce C Oliveira, Luiza V Barreto, Danielle Skinner, Pavla Fajtová, Miriam A Giardini, Brendon Woodworth, Conner Bardine, André L Lourenço, Charles S Craik, Antti Poso, Larissa M Podust, James H McKerrow, Jair L Siqueira-Neto, Anthony J O'Donoghue, Eufrânio N da Silva Júnior, Rafaela S Ferreira | Journal Of Chemical Information And Modeling | 2022-08-12 | Abstract | |
| Author Correction: Cross-reactive immunity against the SARS-CoV-2 Omicron variant is low in pediatric patients with prior COVID-19 or MIS-C. | Juanjie Tang, Tanya Novak, Julian Hecker, Gabrielle Grubbs, Fatema Tuz Zahra, Lorenza Bellusci, Sara Pourhashemi, Janet Chou, Kristin Moffitt, Natasha B Halasa, Stephanie P Schwartz, Tracie C Walker, Keiko M Tarquinio, Matt S Zinter, Mary A Staat, Shira J Gertz, Natalie Z Cvijanovich, Jennifer E Schuster, Laura L Loftis, Bria M Coates, Elizabeth H Mack, Katherine Irby, Julie C Fitzgerald, Courtney M Rowan, Michele Kong, Heidi R Flori, Aline B Maddux, Steven L Shein, Hillary Crandall, Janet R Hume, Charlotte V Hobbs, Adriana H Tremoulet, Chisato Shimizu, Jane C Burns, Sabrina R Chen, Hye Kyung Moon, Christoph Lange, Adrienne G Randolph, Surender Khurana | Nature Communications | 2022-08-12 | Abstract | |
| The Microbiome and Mental Health Across the Lifespan. | Faith Dickerson, Amanda Hazel Dilmore, Filipa Godoy-Vitorino, Tanya T Nguyen, Martin Paulus, Adrian A Pinto-Tomas, Cristofer Moya-Roman, Ibrahim Zuniga-Chaves, Emily G Severance, Dilip V Jeste | Current Topics In Behavioral Neurosciences | 2022-08-11 | Abstract | |
| Broadly neutralizing antibodies to SARS-related viruses can be readily induced in rhesus macaques. | Wan-Ting He, Meng Yuan, Sean Callaghan, Rami Musharrafieh, Ge Song, Murillo Silva, Nathan Beutler, Wen-Hsin Lee, Peter Yong, Jonathan L Torres, Mariane Melo, Panpan Zhou, Fangzhu Zhao, Xueyong Zhu, Linghang Peng, Deli Huang, Fabio Anzanello, James Ricketts, Mara Parren, Elijah Garcia, Melissa Ferguson, William Rinaldi, Stephen A Rawlings, David Nemazee, Davey M Smith, Bryan Briney, Yana Safonova, Thomas F Rogers, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Shane Crotty, Darrell J Irvine, Andrew B Ward, Ian A Wilson, Dennis R Burton, Raiees Andrabi | Science Translational Medicine | 2022-08-10 | Abstract | |
| Acetate reprograms gut microbiota during alcohol consumption. | Cameron Martino, Livia S Zaramela, Bei Gao, Mallory Embree, Janna Tarasova, Seth J Parker, Yanhan Wang, Huikuan Chu, Peng Chen, Kuei-Chuan Lee, Daniela Domingos Galzerani, Jivani M Gengatharan, Asama Lekbua, Maxwell Neal, Rob Knight, Hidekazu Tsukamoto, Christian M Metallo, Bernd Schnabl, Karsten Zengler | Nature Communications | 2022-08-08 | Abstract | |
| Native metabolomics identifies the rivulariapeptolide family of protease inhibitors. | Raphael Reher, Allegra T Aron, Pavla Fajtová, Paolo Stincone, Berenike Wagner, Alicia I Pérez-Lorente, Chenxi Liu, Ido Y Ben Shalom, Wout Bittremieux, Mingxun Wang, Kyowon Jeong, Marie L Matos-Hernandez, Kelsey L Alexander, Eduardo J Caro-Diaz, C Benjamin Naman, J H William Scanlan, Phil M M Hochban, Wibke E Diederich, Carlos Molina-Santiago, Diego Romero, Khaled A Selim, Peter Sass, Heike Brötz-Oesterhelt, Chambers C Hughes, Pieter C Dorrestein, Anthony J O'Donoghue, William H Gerwick, Daniel Petras | Nature Communications | 2022-08-08 | Abstract | |
| Breathing and tilting: mesoscale simulations illuminate influenza glycoprotein vulnerabilities. | Lorenzo Casalino, Christian Seitz, Julia Lederhofer, Yaroslav Tsybovsky, Ian A Wilson, Masaru Kanekiyo, Rommie E Amaro | BioRxiv : The Preprint Server For Biology | 2022-08-07 | Abstract | |
| Intestinal transgene delivery with native E. coli chassis allows persistent physiological changes. | Baylee J Russell, Steven D Brown, Nicole Siguenza, Irene Mai, Anand R Saran, Amulya Lingaraju, Erica S Maissy, Ana C Dantas Machado, Antonio F M Pinto, Concepcion Sanchez, Leigh-Ana Rossitto, Yukiko Miyamoto, R Alexander Richter, Samuel B Ho, Lars Eckmann, Jeff Hasty, David J Gonzalez, Alan Saghatelian, Rob Knight, Amir Zarrinpar | Cell | 2022-08-04 | Abstract | |
| Architecture and self-assembly of the jumbo bacteriophage nuclear shell. | Thomas G Laughlin, Amar Deep, Amy M Prichard, Christian Seitz, Yajie Gu, Eray Enustun, Sergey Suslov, Kanika Khanna, Erica A Birkholz, Emily Armbruster, J Andrew McCammon, Rommie E Amaro, Joe Pogliano, Kevin D Corbett, Elizabeth Villa | Nature | 2022-08-03 | Abstract | |
| Duodenal CD8+ T resident memory cell apoptosis contributes to gut barrier dysfunction and microbial translocation in early alcohol-associated liver disease in humans. | Luca Maccioni, Axelle Loriot, Joseph Dewulf, Guido Bommer, Yves Horsmans, Nicolas Lanthier, Isabelle Leclercq, Bernd Schnabl, Peter Stärkel | Alimentary Pharmacology & Therapeutics | 2022-08-02 | Abstract | |
| Fostering Sustainable Biomedical Research Training in Mozambique: A Spin-Off of the Medical Education Partnership Initiative. | Emília Virgínia Noormahomed, Sérgio Noormahomed, Delfina Hlashwayo, Emília Martins, Mamudo Ismail, Stephen W Bickler, Jean Nachega, Manuel Mahoche, Kim E Barrett, Constance A Benson, Robert T Schooley | Annals Of Global Health | 2022-08-02 | Abstract | |
| Vascular Proteome Responses Precede Organ Dysfunction in a Murine Model of Staphylococcus aureus Bacteremia. | James T Sorrentino, Gregory J Golden, Claire Morris, Chelsea D Painter, Victor Nizet, Alexandre Rosa Campos, Jeffrey W Smith, Christofer Karlsson, Johan Malmström, Nathan E Lewis, Jeffrey D Esko, Alejandro Gómez Toledo | MSystems | 2022-08-01 | Abstract | |
| Analysis of the FAST™ system for expedited identification and antimicrobial susceptibility testing of bloodborne pathogens. | Peiting Kuo, Khrissa LeCrone, Megan Chiu, Susan Realegeno, David T Pride | Diagnostic Microbiology And Infectious Disease | 2022-07-30 | Abstract | |
| Evaluating impacts of syntenic block detection strategies on rearrangement phylogeny using Mycobacterium tuberculosis isolates. | Afif Elghraoui, Siavash Mirarab, Krister M Swenson, Faramarz Valafar | Bioinformatics (Oxford, England) | 2022-07-29 | Abstract | |
| Microbiota succession throughout life from the cradle to the grave. | Cameron Martino, Amanda Hazel Dilmore, Zachary M Burcham, Jessica L Metcalf, Dilip Jeste, Rob Knight | Nature Reviews. Microbiology | 2022-07-29 | Abstract | |
| RNA Fluorescence in situ Hybridization (FISH) to Visualize Microbial Colonization and Infection in Caenorhabditis elegans Intestines. | Dalaena E Rivera, Vladimir Lažetić, Emily R Troemel, Robert J Luallen | Journal Of Visualized Experiments : JoVE | 2022-07-27 | Abstract | |
| Comparative Pharmacokinetics of Tixagevimab/Cilgavimab (AZD7442) Administered Intravenously Versus Intramuscularly in Symptomatic SARS-CoV-2 Infection. | Rachel A Bender Ignacio, David A Wohl, Rosalin Arends, Venkatesh Pilla Reddy, Ying Mu, Arzhang Cyrus Javan, Michael D Hughes, Joseph J Eron, Judith S Currier, Davey Smith, Kara W Chew, Michael Gibbs, Courtney V Fletcher | Clinical Pharmacology And Therapeutics | 2022-07-26 | Abstract | |
| Non-invasive skin sampling detects systemically administered drugs in humans. | Morgan Panitchpakdi, Kelly C Weldon, Alan K Jarmusch, Emily C Gentry, Arianna Choi, Yadira Sepulveda, Shaden Aguirre, Kunyang Sun, Jeremiah D Momper, Pieter C Dorrestein, Shirley M Tsunoda | PloS One | 2022-07-26 | Abstract | |
| Correction for Rudicell et al., "High Prevalence of Simian Immunodeficiency Virus Infection in a Community of Savanna Chimpanzees". | Rebecca S Rudicell, Alex K Piel, Fiona Stewart, Deborah L Moore, Gerald H Learn, Yingying Li, Jun Takehisa, Lilian Pintea, George M Shaw, Jim Moore, Paul M Sharp, Beatrice H Hahn | Journal Of Virology | 2022-07-26 | Abstract | |
| Lymphatic-preserving treatment sequencing with immune checkpoint inhibition unleashes cDC1-dependent antitumor immunity in HNSCC. | Robert Saddawi-Konefka, Aoife O'Farrell, Farhoud Faraji, Lauren Clubb, Michael M Allevato, Shawn M Jensen, Bryan S Yung, Zhiyong Wang, Victoria H Wu, Nana-Ama Anang, Riyam Al Msari, Shiruyeh Schokrpur, Ida Franiak Pietryga, Alfredo A Molinolo, Jill P Mesirov, Aaron B Simon, Bernard A Fox, Jack D Bui, Andrew Sharabi, Ezra E W Cohen, Joseph A Califano, J Silvio Gutkind | Nature Communications | 2022-07-25 | Abstract | |
| Protease-Responsive Peptide-Conjugated Mitochondrial-Targeting AIEgens for Selective Imaging and Inhibition of SARS-CoV-2-Infected Cells. | Yong Cheng, Alex E Clark, Jiajing Zhou, Tengyu He, Yi Li, Raina M Borum, Matthew N Creyer, Ming Xu, Zhicheng Jin, Jingcheng Zhou, Wonjun Yim, Zhuohong Wu, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Jesse V Jokerst | ACS Nano | 2022-07-25 | Abstract | |
| Association of compassion and empathy with prosocial health behaviors and attitudes in a pandemic. | Melissa M Karnaze, John Bellettiere, Cinnamon S Bloss | PloS One | 2022-07-22 | Abstract | |
| TREM2 macrophages induced by human lipids drive inflammation in acne lesions. | Tran H Do, Feiyang Ma, Priscila R Andrade, Rosane Teles, Bruno J de Andrade Silva, Chanyue Hu, Alejandro Espinoza, Jer-En Hsu, Chun-Seok Cho, Myungjin Kim, Jingyue Xi, Xianying Xing, Olesya Plazyo, Lam C Tsoi, Carol Cheng, Jenny Kim, Bryan D Bryson, Alan M O'Neill, Marco Colonna, Johann E Gudjonsson, Eynav Klechevsky, Jun Hee Lee, Richard L Gallo, Barry R Bloom, Matteo Pellegrini, Robert L Modlin | Science Immunology | 2022-07-22 | Abstract | |
| Coupling of distant ATPase domains in the circadian clock protein KaiC. | Jeffrey A Swan, Colby R Sandate, Archana G Chavan, Alfred M Freeberg, Diana Etwaru, Dustin C Ernst, Joseph G Palacios, Susan S Golden, Andy LiWang, Gabriel C Lander, Carrie L Partch | Nature Structural & Molecular Biology | 2022-07-21 | Abstract | |
| Harnessing the microbiome to prevent global biodiversity loss. | Raquel S Peixoto, Christian R Voolstra, Michael Sweet, Carlos M Duarte, Susana Carvalho, Helena Villela, Jeantine E Lunshof, Lone Gram, Douglas C Woodhams, Jens Walter, Anna Roik, Ute Hentschel, Rebecca Vega Thurber, Brendan Daisley, Blake Ushijima, Daniele Daffonchio, Rodrigo Costa, Tina Keller-Costa, Jeff S Bowman, Alexandre S Rosado, Gregor Reid, Christopher E Mason, Jenifer B Walke, Torsten Thomas, Gabriele Berg | Nature Microbiology | 2022-07-21 | Abstract | |
| Omicron spike function and neutralizing activity elicited by a comprehensive panel of vaccines. | John E Bowen, Amin Addetia, Ha V Dang, Cameron Stewart, Jack T Brown, William K Sharkey, Kaitlin R Sprouse, Alexandra C Walls, Ignacio G Mazzitelli, Jennifer K Logue, Nicholas M Franko, Nadine Czudnochowski, Abigail E Powell, Exequiel Dellota, Kumail Ahmed, Asefa Shariq Ansari, Elisabetta Cameroni, Andrea Gori, Alessandra Bandera, Christine M Posavad, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Shane Crotty, Najeeha Talat Iqbal, Davide Corti, Jorge Geffner, Gyorgy Snell, Renata Grifantini, Helen Y Chu, David Veesler | Science (New York, N.Y.) | 2022-07-19 | Abstract | |
| Adaptive laboratory evolution and independent component analysis disentangle complex vancomycin adaptation trajectories. | Anaëlle Fait, Yara Seif, Kasper Mikkelsen, Saugat Poudel, Jerry M Wells, Bernhard O Palsson, Hanne Ingmer | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-07-19 | Abstract | |
| Association of Plasma Eicosanoid Levels With Immune, Viral, and Cognitive Outcomes in People With HIV. | Pragney Deme, Mohammed Moniruzzaman, David Moore, Robert Heaton, Ronald Ellis, Scott Letendre, Norman Haughey | Neurology | 2022-07-18 | Abstract | |
| Mass Difference Matching Unfolds Hidden Molecular Structures of Dissolved Organic Matter. | Carsten Simon, Kai Dührkop, Daniel Petras, Vanessa-Nina Roth, Sebastian Böcker, Pieter C Dorrestein, Gerd Gleixner | Environmental Science & Technology | 2022-07-14 | Abstract | |
| Genetic regulation of OAS1 nonsense-mediated decay underlies association with COVID-19 hospitalization in patients of European and African ancestries. | A Rouf Banday, Megan L Stanifer, Oscar Florez-Vargas, Olusegun O Onabajo, Brenen W Papenberg, Muhammad A Zahoor, Lisa Mirabello, Timothy J Ring, Chia-Han Lee, Paul S Albert, Evangelos Andreakos, Evgeny Arons, Greg Barsh, Leslie G Biesecker, David L Boyle, Mark S Brahier, Andrea Burnett-Hartman, Mary Carrington, Euijin Chang, Pyoeng Gyun Choe, Rex L Chisholm, Leandro M Colli, Clifton L Dalgard, Carolynn M Dude, Jeff Edberg, Nathan Erdmann, Heather S Feigelson, Benedito A Fonseca, Gary S Firestein, Adam J Gehring, Cuncai Guo, Michelle Ho, Steven Holland, Amy A Hutchinson, Hogune Im, Les'Shon Irby, Michael G Ison, Naima T Joseph, Hong Bin Kim, Robert J Kreitman, Bruce R Korf, Steven M Lipkin, Siham M Mahgoub, Iman Mohammed, Guilherme L Paschoalini, Jennifer A Pacheco, Michael J Peluso, Daniel J Rader, David T Redden, Marylyn D Ritchie, Brooke Rosenblum, M Elizabeth Ross, Hanaisa P Sant Anna, Sharon A Savage, Sudha Sharma, Eleni Siouti, Alicia K Smith, Vasiliki Triantafyllia, Joselin M Vargas, Jose D Vargas, Anurag Verma, Vibha Vij, Duane R Wesemann, Meredith Yeager, Xu Yu, Yu Zhang, Steeve Boulant, Stephen J Chanock, Jordan J Feld, Ludmila Prokunina-Olsson | Nature Genetics | 2022-07-14 | Abstract | |
| Non-Native Amino Acid Click Chemistry-Based Technology for Site-Specific Polysaccharide Conjugation to a Bacterial Protein Serving as Both Carrier and Vaccine Antigen. | Neeraj Kapoor, Satoshi Uchiyama, Lucy Pill, Leslie Bautista, Angie Sedra, Lu Yin, Maritoni Regan, Ellen Chu, Taylor Rabara, Melissa Wong, Peter Davey, Jeff Fairman, Victor Nizet | ACS Omega | 2022-07-11 | Abstract | |
| The Prevalence and Determinants of NAFLD and MAFLD and Their Severity in the VA Primary Care Setting. | Aaron P Thrift, Theresa H Nguyen, Codey Pham, Maya Balakrishnan, Fasiha Kanwal, Rohit Loomba, Hao T Duong, David Ramsey, Hashem B El-Serag | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2022-07-08 | Abstract | |
| Updating Urinary Microbiome Analyses to Enhance Biologic Interpretation. | Nazema Y Siddiqui, Li Ma, Linda Brubaker, Jialiang Mao, Carter Hoffman, Erin M Dahl, Zhuoqun Wang, Lisa Karstens | Frontiers In Cellular And Infection Microbiology | 2022-07-08 | Abstract | |
| Comparative Dynamics of Delta and Omicron SARS-CoV-2 Variants across and between California and Mexico. | Sanjay R Mehta, Davey M Smith, Celia Boukadida, Antoine Chaillon | Viruses | 2022-07-08 | Abstract | |
| Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission. | Smruthi Karthikeyan, Joshua I Levy, Peter De Hoff, Greg Humphrey, Amanda Birmingham, Kristen Jepsen, Sawyer Farmer, Helena M Tubb, Tommy Valles, Caitlin E Tribelhorn, Rebecca Tsai, Stefan Aigner, Shashank Sathe, Niema Moshiri, Benjamin Henson, Adam M Mark, Abbas Hakim, Nathan A Baer, Tom Barber, Pedro Belda-Ferre, Marisol Chacón, Willi Cheung, Evelyn S Cresini, Emily R Eisner, Alma L Lastrella, Elijah S Lawrence, Clarisse A Marotz, Toan T Ngo, Tyler Ostrander, Ashley Plascencia, Rodolfo A Salido, Phoebe Seaver, Elizabeth W Smoot, Daniel McDonald, Robert M Neuhard, Angela L Scioscia, Alysson M Satterlund, Elizabeth H Simmons, Dismas B Abelman, David Brenner, Judith C Bruner, Anne Buckley, Michael Ellison, Jeffrey Gattas, Steven L Gonias, Matt Hale, Faith Hawkins, Lydia Ikeda, Hemlata Jhaveri, Ted Johnson, Vince Kellen, Brendan Kremer, Gary Matthews, Ronald W McLawhon, Pierre Ouillet, Daniel Park, Allorah Pradenas, Sharon Reed, Lindsay Riggs, Alison Sanders, Bradley Sollenberger, Angela Song, Benjamin White, Terri Winbush, Christine M Aceves, Catelyn Anderson, Karthik Gangavarapu, Emory Hufbauer, Ezra Kurzban, Justin Lee, Nathaniel L Matteson, Edyth Parker, Sarah A Perkins, Karthik S Ramesh, Refugio Robles-Sikisaka, Madison A Schwab, Emily Spencer, Shirlee Wohl, Laura Nicholson, Ian H Mchardy, David P Dimmock, Charlotte A Hobbs, Omid Bakhtar, Aaron Harding, Art Mendoza, Alexandre Bolze, David Becker, Elizabeth T Cirulli, Magnus Isaksson, Kelly M Schiabor Barrett, Nicole L Washington, John D Malone, Ashleigh Murphy Schafer, Nikos Gurfield, Sarah Stous, Rebecca Fielding-Miller, Richard S Garfein, Tommi Gaines, Cheryl Anderson, Natasha K Martin, Robert Schooley, Brett Austin, Duncan R MacCannell, Stephen F Kingsmore, William Lee, Seema Shah, Eric McDonald, Alexander T Yu, Mark Zeller, Kathleen M Fisch, Christopher Longhurst, Patty Maysent, David Pride, Pradeep K Khosla, Louise C Laurent, Gene W Yeo, Kristian G Andersen, Rob Knight | Nature | 2022-07-07 | Abstract | |
| Enhancing untargeted metabolomics using metadata-based source annotation. | Julia M Gauglitz, Kiana A West, Wout Bittremieux, Candace L Williams, Kelly C Weldon, Morgan Panitchpakdi, Francesca Di Ottavio, Christine M Aceves, Elizabeth Brown, Nicole C Sikora, Alan K Jarmusch, Cameron Martino, Anupriya Tripathi, Michael J Meehan, Kathleen Dorrestein, Justin P Shaffer, Roxana Coras, Fernando Vargas, Lindsay DeRight Goldasich, Tara Schwartz, MacKenzie Bryant, Gregory Humphrey, Abigail J Johnson, Katharina Spengler, Pedro Belda-Ferre, Edgar Diaz, Daniel McDonald, Qiyun Zhu, Emmanuel O Elijah, Mingxun Wang, Clarisse Marotz, Kate E Sprecher, Daniela Vargas-Robles, Dana Withrow, Gail Ackermann, Lourdes Herrera, Barry J Bradford, Lucas Maciel Mauriz Marques, Juliano Geraldo Amaral, Rodrigo Moreira Silva, Flavio Protasio Veras, Thiago Mattar Cunha, Rene Donizeti Ribeiro Oliveira, Paulo Louzada-Junior, Robert H Mills, Paulina K Piotrowski, Stephanie L Servetas, Sandra M Da Silva, Christina M Jones, Nancy J Lin, Katrice A Lippa, Scott A Jackson, Rima Kaddurah Daouk, Douglas Galasko, Parambir S Dulai, Tatyana I Kalashnikova, Curt Wittenberg, Robert Terkeltaub, Megan M Doty, Jae H Kim, Kyung E Rhee, Julia Beauchamp-Walters, Kenneth P Wright, Maria Gloria Dominguez-Bello, Mark Manary, Michelli F Oliveira, Brigid S Boland, Norberto Peporine Lopes, Monica Guma, Austin D Swafford, Rachel J Dutton, Rob Knight, Pieter C Dorrestein | Nature Biotechnology | 2022-07-07 | Abstract | |
| Spike-heparan sulfate interactions in SARS-CoV-2 infection. | Fiona L Kearns, Daniel R Sandoval, Lorenzo Casalino, Thomas M Clausen, Mia A Rosenfeld, Charlotte B Spliid, Rommie E Amaro, Jeffrey D Esko | Current Opinion In Structural Biology | 2022-07-06 | Abstract | |
| Host-parasite coevolution promotes innovation through deformations in fitness landscapes. | Animesh Gupta, Luis Zaman, Hannah M Strobel, Jenna Gallie, Alita R Burmeister, Benjamin Kerr, Einat S Tamar, Roy Kishony, Justin R Meyer | ELife | 2022-07-06 | Abstract | |
| Liver cirrhosis and immune dysfunction. | Elda Hasa, Phillipp Hartmann, Bernd Schnabl | International Immunology | 2022-07-06 | Abstract | |
| Increased Innate Immune Susceptibility in Hyperpigmented Bacteriophage-Resistant Mutants of Pseudomonas aeruginosa. | Nitasha D Menon, Samuel Penziner, Elizabeth T Montaño, Raymond Zurich, David T Pride, Bipin G Nair, Geetha B Kumar, Victor Nizet | Antimicrobial Agents And Chemotherapy | 2022-07-06 | Abstract | |
| Genomically Silent Refractory Gastric Cancer in a Young Patient Exhibits Overexpression of CXCL5. | Jonathan Hernandez, Michael A Turner, Prerna Bali, Mojgan Hosseini, Michael Bouvet, Kaitlyn Kelly, Marygorret Obonyo | Current Oncology (Toronto, Ont.) | 2022-07-06 | Abstract | |
| Effects of single and dual hypocretin-receptor blockade or knockdown of hypocretin projections to the central amygdala on alcohol drinking in dependent male rats. | Gabriel M Aldridge, Tyler A Zarin, Adam J Brandner, Olivier George, Nicholas W Gilpin, Vez Repunte-Canonigo, Pietro P Sanna, George F Koob, Leandro F Vendruscolo, Brooke E Schmeichel | Addiction Neuroscience | 2022-07-03 | Abstract | |
| Willingness of older Canadians with HIV to participate in HIV cure research near and after the end-of-life: A mixed-method study. | David Lessard, Karine Dube, Martin Bilodeau, Patrick Keeler, Shari Margolese, Ron Rosenes, Liliya Sinyavskaya, Madeleine Durand, Erika Benko, Colin Kovacs, Charlotte Guerlotté, Wangari E Tharao, Keresa Arnold, Renée Masching, Darien Taylor, José Sousa, Mario Ostrowski, Jeff Taylor, Andy Kaytes, Davey Smith, Sara Gianella Weibel, Nicolas Chomont, Jonathan B Angel, Jean-Pierre Routy, Eric Cohen, Bertrand Lebouche, Cecilia T Costiniuk | AIDS Research And Human Retroviruses | 2022-07-01 | Abstract | |
| T Cells in Multisystem Inflammatory Syndrome in Children (MIS-C) Have a Predominant CD4+ T Helper Response to SARS-CoV-2 Peptides and Numerous Virus-Specific CD4- CD8- Double-Negative T Cells. | Li-En Hsieh, Jaeyoon Song, Alba Grifoni, Chisato Shimizu, Adriana H Tremoulet, Kirsten B Dummer, Jane C Burns, Alessandro Sette, Alessandra Franco | International Journal Of Molecular Sciences | 2022-06-29 | Abstract | |
| Human Milk Oligosaccharides Impact Cellular and Inflammatory Gene Expression and Immune Response. | Fernanda Rosa, Ashok K Sharma, Manoj Gurung, David Casero, Katelin Matazel, Lars Bode, Christy Simecka, Ahmed A Elolimy, Patricia Tripp, Christopher Randolph, Timothy W Hand, Keith D Williams, Tanya LeRoith, Laxmi Yeruva | Frontiers In Immunology | 2022-06-29 | Abstract | |
| Phage Cocktails Constrain the Growth of . | Stephen Wandro, Pooja Ghatbale, Hedieh Attai, Clark Hendrickson, Cyril Samillano, Joy Suh, Sage J B Dunham, David T Pride, Katrine Whiteson | MSystems | 2022-06-28 | Abstract | |
| Context-aware deconvolution of cell-cell communication with Tensor-cell2cell. | Erick Armingol, Hratch M Baghdassarian, Cameron Martino, Araceli Perez-Lopez, Caitlin Aamodt, Rob Knight, Nathan E Lewis | Nature Communications | 2022-06-27 | Abstract | |
| Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity. | Amitesh Anand, Arjun Patel, Ke Chen, Connor A Olson, Patrick V Phaneuf, Cameron Lamoureux, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O Palsson | Nature Communications | 2022-06-27 | Abstract | |
| Heterologous Expression in of the Columbamide Pathway from the Cyanobacterium and Production of New Analogs. | Arnaud Taton, Sebastian Rohrer, Brienna Diaz, Raphael Reher, Andres Mauricio Caraballo Rodriguez, Marsha L Pierce, Pieter C Dorrestein, Lena Gerwick, William H Gerwick, James W Golden | ACS Chemical Biology | 2022-06-27 | Abstract | |
| The molecular impact of life in an indoor environment. | Alexander A Aksenov, Rodolfo A Salido, Alexey V Melnik, Caitriona Brennan, Asker Brejnrod, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, Franck Lejzerowicz, Delphine K Farmer, Marina E Vance, Rob Knight, Pieter C Dorrestein | Science Advances | 2022-06-24 | Abstract | |
| Immunological memory to SARS-CoV-2 infection and COVID-19 vaccines. | Alessandro Sette, Shane Crotty | Immunological Reviews | 2022-06-22 | Abstract | |
| An M protein coiled coil unfurls and exposes its hydrophobic core to capture LL-37. | Piotr Kolesinski, Kuei-Chen Wang, Yujiro Hirose, Victor Nizet, Partho Ghosh | ELife | 2022-06-21 | Abstract | |
| Monoclonal antibody treatment drives rapid culture conversion in SARS-CoV-2 infection. | Julie Boucau, Kara W Chew, Manish C Choudhary, Rinki Deo, James Regan, James P Flynn, Charles R Crain, Michael D Hughes, Justin Ritz, Carlee Moser, Joan A Dragavon, Arzhang C Javan, Ajay Nirula, Paul Klekotka, Alexander L Greninger, Robert W Coombs, William A Fischer, Eric S Daar, David A Wohl, Joseph J Eron, Judith S Currier, Davey M Smith, , Jonathan Z Li, Amy K Barczak, | Cell Reports. Medicine | 2022-06-20 | Abstract | |
| Contribution of Streptococcus pyogenes M87 protein to innate immune resistance and virulence. | Yujiro Hirose, Piotr Kolesinski, Masanobu Hiraoka, Satoshi Uchiyama, Raymond H Zurich, Monika Kumaraswamy, Elisabet Bjanes, Partho Ghosh, Shigetada Kawabata, Victor Nizet | Microbial Pathogenesis | 2022-06-17 | Abstract | |
| A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities. | Justin P Shaffer, Carolina S Carpenter, Cameron Martino, Rodolfo A Salido, Jeremiah J Minich, MacKenzie Bryant, Karenina Sanders, Tara Schwartz, Gregory Humphrey, Austin D Swafford, Rob Knight | BioTechniques | 2022-06-17 | Abstract | |
| Single-cell characterization of step-wise acquisition of carboplatin resistance in ovarian cancer. | Alexander T Wenzel, Devora Champa, Hrishi Venkatesh, Si Sun, Cheng-Yu Tsai, Jill P Mesirov, Jack D Bui, Stephen B Howell, Olivier Harismendy | NPJ Systems Biology And Applications | 2022-06-17 | Abstract | |
| Characterizing genetic transmission networks among newly diagnosed HIV-1 infected individuals in eastern China: 2012-2016. | Xiaobei Ding, Antoine Chaillon, Xiaohong Pan, Jiafeng Zhang, Ping Zhong, Lin He, Wanjun Chen, Qin Fan, Jun Jiang, Mingyu Luo, Yan Xia, Zhihong Guo, Davey M Smith | PloS One | 2022-06-16 | Abstract | |
| Small-Molecule Thioesters as SARS-CoV-2 Main Protease Inhibitors: Enzyme Inhibition, Structure-Activity Relationships, Antiviral Activity, and X-ray Structure Determination. | Thanigaimalai Pillaiyar, Philipp Flury, Nadine Krüger, Haixia Su, Laura Schäkel, Elany Barbosa Da Silva, Olga Eppler, Thales Kronenberger, Tianqing Nie, Stephanie Luedtke, Cheila Rocha, Katharina Sylvester, Marvin R I Petry, James H McKerrow, Antti Poso, Stefan Pöhlmann, Michael Gütschow, Anthony J O'Donoghue, Yechun Xu, Christa E Müller, Stefan A Laufer | Journal Of Medicinal Chemistry | 2022-06-16 | Abstract | |
| Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings. | Victor J Cantú, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Karenina Sanders, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Evelyn S Crescini, Peter De Hoff, Emily Eisner, Abbas Hakim, Bhavika Kapadia, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Shashank Sathe, Phoebe Seaver, Elizabeth W Smoot, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight | MSystems | 2022-06-15 | Abstract | |
| Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings. | Victor J Cantú, Karenina Sanders, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Peter De Hoff, Emily Eisner, Abbas Hakim, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Ashley Plascencia, Shashank Sathe, Elizabeth W Smoot, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight | MSystems | 2022-06-15 | Abstract | |
| Potential Immune-Microbiome Interactions in Breast Cancer May Advance Treatment: What's Holding Us Back? | Austin D Swafford, Soni Khandelwal, Shrikant Bhute | Critical Reviews In Immunology | 2022-06-13 | Abstract | |
| Discovery of Triple Inhibitors of Both SARS-CoV-2 Proteases and Human Cathepsin L. | Ittipat Meewan, Jacob Kattoula, Julius Y Kattoula, Danielle Skinner, Pavla Fajtová, Miriam A Giardini, Brendon Woodworth, James H McKerrow, Jair Lage de Siqueira-Neto, Anthony J O'Donoghue, Ruben Abagyan | Pharmaceuticals (Basel, Switzerland) | 2022-06-13 | Abstract | |
| Baseline microbiome and metabolome are associated with response to ITIS diet in an exploratory trial in patients with rheumatoid arthritis. | Roxana Coras, Cameron Martino, Julia M Gauglitz, Francesca Cedola, Anupriya Tripathi, Alan K Jarmusch, Maram Alharthi, Marta Fernandez-Bustamante, Meritxell Agustin-Perez, Abha Singh, Soo-In Choi, Tania Rivera, Katherine Nguyen, Tatyana Shekhtman, Tiffany Holt, Susan Lee, Shahrokh Golshan, Pieter C Dorrestein, Rob Knight, Monica Guma | Clinical And Translational Medicine | 2022-06-13 | Abstract | |
| Diurnal and eating-associated microbial patterns revealed via high-frequency saliva sampling. | Yichen Hu, Amnon Amir, Xiaochang Huang, Yan Li, Shi Huang, Elaine Wolfe, Sophie Weiss, Rob Knight, Zhenjiang Zech Xu | Genome Research | 2022-06-10 | Abstract | |
| Letter: non-invasive prediction models to exclude cirrhosis in NAFLD-not everyone fits the mould. Authors' reply. | Danielle Brandman, Marie Boyle, Stuart McPherson, Mark L Van Natta, Arun J Sanyal, Kris Kowdley, Brent Neuschwander-Tetri, Naga Chalasani, Manal F Abdelmalek, Norah A Terrault, Art McCullough, Ricki Bettencourt, Cyrielle Caussy, David E Kleiner, Cynthia Behling, James Tonascia, Quentin M Anstee, Rohit Loomba | Alimentary Pharmacology & Therapeutics | 2022-06-10 | Abstract | |
| Active genetics comes alive: Exploring the broad applications of CRISPR-based selfish genetic elements (or gene-drives): Exploring the broad applications of CRISPR-based selfish genetic elements (or gene-drives). | Valentino M Gantz, Ethan Bier | BioEssays : News And Reviews In Molecular, Cellular And Developmental Biology | 2022-06-09 | Abstract | |
| Binding of the SARS-CoV-2 envelope E protein to human BRD4 is essential for infection. | Kendra R Vann, Arpan Acharya, Suk Min Jang, Catherine Lachance, Mohamad Zandian, Tina A Holt, Audrey L Smith, Kabita Pandey, Donald L Durden, Dalia El-Gamal, Jacques Côté, Siddappa N Byrareddy, Tatiana G Kutateladze | Structure (London, England : 1993) | 2022-06-09 | Abstract | |
| The Urobiomes of Adult Women With Various Lower Urinary Tract Symptoms Status Differ: A Re-Analysis. | Cara Joyce, Thomas Halverson, Caroline Gonzalez, Linda Brubaker, Alan J Wolfe | Frontiers In Cellular And Infection Microbiology | 2022-06-09 | Abstract | |
| Risk assessment with gut microbiome and metabolite markers in NAFLD development. | Howell Leung, Xiaoxue Long, Yueqiong Ni, Lingling Qian, Emmanouil Nychas, Sara Leal Siliceo, Dennis Pohl, Kati Hanhineva, Yan Liu, Aimin Xu, Henrik B Nielsen, Eugeni Belda, Karine Clément, Rohit Loomba, Huating Li, Weiping Jia, Gianni Panagiotou | Science Translational Medicine | 2022-06-08 | Abstract | |
| Solithromycin in Children and Adolescents With Community-acquired Bacterial Pneumonia. | Jason E Lang, Christoph P Hornik, Carrie Elliott, Adam Silverstein, Chi Hornik, Amira Al-Uzri, Miroslava Bosheva, John S Bradley, Charissa Fay Corazon Borja-Tabora, David Di John, Ana Mendez Echevarria, Jessica E Ericson, David Friedel, Ferenc Gonczi, Marie Grace Dawn Isidro, Laura P James, Krisztina Kalocsai, Ioannis Koutroulis, Istvan Laki, Anna Lisa T Ong-Lim, Marta Nad, Gabor Simon, Salma Syed, Eva Szabo, Daniel K Benjamin, Michael Cohen-Wolkowiez, | The Pediatric Infectious Disease Journal | 2022-06-07 | Abstract | |
| Correlates of protection against SARS-CoV-2 infection and COVID-19 disease. | David Goldblatt, Galit Alter, Shane Crotty, Stanley A Plotkin | Immunological Reviews | 2022-06-05 | Abstract | |
| The oral microbiome and breast cancer and non-malignant breast disease, and its relationship with the fecal microbiome in the Ghana Breast Health Study. | Zeni Wu, Doratha A Byrd, Yunhu Wan, Daniel Ansong, Joe-Nat Clegg-Lamptey, Beatrice Wiafe-Addai, Lawrence Edusei, Ernest Adjei, Nicholas Titiloye, Florence Dedey, Francis Aitpillah, Joseph Oppong, Verna Vanderpuye, Ernest Osei-Bonsu, Casey L Dagnall, Kristine Jones, Amy Hutchinson, Belynda D Hicks, Thomas U Ahearn, Jianxin Shi, Rob Knight, Richard Biritwum, Joel Yarney, Seth Wiafe, Baffour Awuah, Kofi Nyarko, Jonine D Figueroa, Rashmi Sinha, Montserrat Garcia-Closas, Louise A Brinton, Emily Vogtmann | International Journal Of Cancer | 2022-06-03 | Abstract | |
| Changing global epidemiology of liver cancer from 2010 to 2019: NASH is the fastest growing cause of liver cancer. | Daniel Q Huang, Amit G Singal, Yuko Kono, Darren J H Tan, Hashem B El-Serag, Rohit Loomba | Cell Metabolism | 2022-06-03 | Abstract | |
| Synchrony and idiosyncrasy in the gut microbiome of wild baboons. | Johannes R Björk, Mauna R Dasari, Kim Roche, Laura Grieneisen, Trevor J Gould, Jean-Christophe Grenier, Vania Yotova, Neil Gottel, David Jansen, Laurence R Gesquiere, Jacob B Gordon, Niki H Learn, Tim L Wango, Raphael S Mututua, J Kinyua Warutere, Long'ida Siodi, Sayan Mukherjee, Luis B Barreiro, Susan C Alberts, Jack A Gilbert, Jenny Tung, Ran Blekhman, Elizabeth A Archie | Nature Ecology & Evolution | 2022-06-02 | Abstract | |
| Targeted isolation of diverse human protective broadly neutralizing antibodies against SARS-like viruses. | Wan-Ting He, Rami Musharrafieh, Ge Song, Katharina Dueker, Longping V Tse, David R Martinez, Alexandra Schäfer, Sean Callaghan, Peter Yong, Nathan Beutler, Jonathan L Torres, Reid M Volk, Panpan Zhou, Meng Yuan, Hejun Liu, Fabio Anzanello, Tazio Capozzola, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, Ian A Wilson, Yana Safonova, Andrew B Ward, Thomas F Rogers, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees Andrabi | Nature Immunology | 2022-06-02 | Abstract | |
| Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention. | Stephanie B Orchanian, Julia M Gauglitz, Stephen Wandro, Kelly C Weldon, Megan Doty, Kristina Stillwell, Shalisa Hansen, Lingjing Jiang, Fernando Vargas, Kyung E Rhee, Julie C Lumeng, Pieter C Dorrestein, Rob Knight, Jae H Kim, Se Jin Song, Austin D Swafford | Advanced Biology | 2022-06-01 | Abstract | |
| Epidemiological and Clinical Features of Kawasaki Disease During the COVID-19 Pandemic in the United States. | Jennifer A Burney, Samantha C Roberts, Laurel L DeHaan, Chisato Shimizu, Emelia V Bainto, Jane W Newburger, Samuel Dominguez, Pei-Ni Jone, Preeti Jaggi, Jacqueline R Szmuszkovicz, Anne H Rowley, Nichole Samuy, Paul Scalici, Adriana H Tremoulet, Daniel R Cayan, Jane C Burns, | JAMA Network Open | 2022-06-01 | Abstract | |
| Risk of Hepatocellular Carcinoma With Tenofovir vs Entecavir Treatment for Chronic Hepatitis B Virus: A Reconstructed Individual Patient Data Meta-analysis. | Darren Jun Hao Tan, Cheng Han Ng, Phoebe Wen Lin Tay, Nicholas Syn, Mark D Muthiah, Wen Hui Lim, Ansel Shao Pin Tang, Kai En Lim, Grace En Hui Lim, Nobuharu Tamaki, Beom Kyung Kim, Margaret Li Peng Teng, James Fung, Rohit Loomba, Mindie H Nguyen, Daniel Q Huang | JAMA Network Open | 2022-06-01 | Abstract | |
| Optimizing UniFrac with OpenACC Yields Greater Than One Thousand Times Speed Increase. | Igor Sfiligoi, George Armstrong, Antonio Gonzalez, Daniel McDonald, Rob Knight | MSystems | 2022-05-31 | Abstract | |
| Bacteriophage-Mediated Perturbation of Defined Bacterial Communities in an Model of the Human Gut. | Hedieh Attai, Jacob Wilde, Roland Liu, Jessica Chopyk, Andrew G Garcia, Emma Allen-Vercoe, David Pride | Microbiology Spectrum | 2022-05-31 | Abstract | |
| Cross-reactive immunity against the SARS-CoV-2 Omicron variant is low in pediatric patients with prior COVID-19 or MIS-C. | Juanjie Tang, Tanya Novak, Julian Hecker, Gabrielle Grubbs, Fatema Tuz Zahra, Lorenza Bellusci, Sara Pourhashemi, Janet Chou, Kristin Moffitt, Natasha B Halasa, Stephanie P Schwartz, Tracie C Walker, Keiko M Tarquinio, Matt S Zinter, Mary A Staat, Shira J Gertz, Natalie Z Cvijanovich, Jennifer E Schuster, Laura L Loftis, Bria M Coates, Elizabeth H Mack, Katherine Irby, Julie C Fitzgerald, Courtney M Rowan, Michele Kong, Heidi R Flori, Aline B Maddux, Steven L Shein, Hillary Crandall, Janet R Hume, Charlotte V Hobbs, Adriana H Tremoulet, Chisato Shimizu, Jane C Burns, Sabrina R Chen, Hye Kyung Moon, Christoph Lange, Adrienne G Randolph, Surender Khurana | Nature Communications | 2022-05-27 | Abstract | |
| Fueling the fire in the gut. | Chia-Hao Lin, Li-Fan Lu | The Journal Of Experimental Medicine | 2022-05-27 | Abstract | |
| Humoral and cellular immune memory to four COVID-19 vaccines. | Zeli Zhang, Jose Mateus, Camila H Coelho, Jennifer M Dan, Carolyn Rydyznski Moderbacher, Rosa Isela Gálvez, Fernanda H Cortes, Alba Grifoni, Alison Tarke, James Chang, E Alexandar Escarrega, Christina Kim, Benjamin Goodwin, Nathaniel I Bloom, April Frazier, Daniela Weiskopf, Alessandro Sette, Shane Crotty | Cell | 2022-05-27 | Abstract | |
| What were the historical reasons for the resistance to recognizing airborne transmission during the COVID-19 pandemic? | Jose L Jimenez, Linsey C Marr, Katherine Randall, Edward Thomas Ewing, Zeynep Tufekci, Trish Greenhalgh, Raymond Tellier, Julian W Tang, Yuguo Li, Lidia Morawska, Jonathan Mesiano-Crookston, David Fisman, Orla Hegarty, Stephanie J Dancer, Philomena M Bluyssen, Giorgio Buonanno, Marcel G L C Loomans, William P Bahnfleth, Maosheng Yao, Chandra Sekhar, Pawel Wargocki, Arsen K Melikov, Kimberly A Prather | Indoor Air | 2022-05-25 | Abstract | |
| Maternal diet is associated with human milk oligosaccharide profile. | Marta Selma-Royo, Sonia González, Miguel Gueimonde, Melinda Chang, Annalee Fürst, Cecilia Martínez-Costa, Lars Bode, Maria Carmen Collado | Molecular Nutrition & Food Research | 2022-05-25 | Abstract | |
| The Ubiquitous Human Skin Commensal Staphylococcus hominis Protects against Opportunistic Pathogens. | Morgan M Severn, Michael R Williams, Ali Shahbandi, Zoie L Bunch, Laurie M Lyon, Amber Nguyen, Livia S Zaramela, Daniel A Todd, Karsten Zengler, Nadja B Cech, Richard L Gallo, Alexander R Horswill | MBio | 2022-05-24 | Abstract | |
| Demographic and clinical characteristics associated with variations in antibody response to BNT162b2 COVID-19 vaccination among healthcare workers at an academic medical centre: a longitudinal cohort analysis. | Joseph E Ebinger, Sandy Joung, Yunxian Liu, Min Wu, Brittany Weber, Brian Claggett, Patrick G Botting, Nancy Sun, Matthew Driver, Yu Hung Kao, Briana Khuu, Timothy Wynter, Trevor-Trung Nguyen, Mona Alotaibi, John C Prostko, Edwin C Frias, James L Stewart, Helen S Goodridge, Peter Chen, Stanley C Jordan, Mohit Jain, Sonia Sharma, Justyna Fert-Bober, Jennifer E Van Eyk, Margo B Minissian, Moshe Arditi, Gil Y Melmed, Jonathan G Braun, Dermot P B McGovern, Susan Cheng, Kimia Sobhani | BMJ Open | 2022-05-24 | Abstract | |
| A Prebiotic Diet Alters the Fecal Microbiome and Improves Sleep in Response to Sleep Disruption in Rats. | Samuel J Bowers, Keith C Summa, Robert S Thompson, Antonio González, Fernando Vargas, Christopher Olker, Peng Jiang, Christopher A Lowry, Pieter C Dorrestein, Rob Knight, Kenneth P Wright, Monika Fleshner, Fred W Turek, Martha H Vitaterna | Frontiers In Neuroscience | 2022-05-24 | Abstract | |
| Supporting the Art: Medication Adherence Patterns in Persons Prescribed Ingestible Sensor-enabled Oral Pre-Exposure Prophylaxis to Prevent Human Immunodeficiency Virus (HIV) Infection. | Sara H Browne, Florin Vaida, Anya Umlauf, Amanda J Tucker, Terrence F Blaschke, Constance A Benson | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-05-23 | Abstract | |
| Fine scale transitions of the microbiota and metabolome along the gastrointestinal tract of herbivorous fishes. | Wesley J Sparagon, Emily C Gentry, Jeremiah J Minich, Lisa Vollbrecht, Lieve M L Laurens, Eric E Allen, Neil A Sims, Pieter C Dorrestein, Linda Wegley Kelly, Craig E Nelson | Animal Microbiome | 2022-05-23 | Abstract | |
| Ancient plant-like terpene biosynthesis in corals. | Immo Burkhardt, Tristan de Rond, Percival Yang-Ting Chen, Bradley S Moore | Nature Chemical Biology | 2022-05-23 | Abstract | |
| Complex and unexpected outcomes of antibiotic therapy against a polymicrobial infection. | Lydia-Ann J Ghuneim, Ruma Raghuvanshi, Kerri A Neugebauer, Douglas V Guzior, Martin H Christian, Bella Schena, Jeremiah M Feiner, Alicia Castillo-Bahena, Jenna Mielke, Marc McClelland, Douglas Conrad, Isaac Klapper, Tianyu Zhang, Robert A Quinn | The ISME Journal | 2022-05-21 | Abstract | |
| Changes in the gut microbiome associated with liver stiffness improvement in nonalcoholic steatohepatitis. | Suzanne R Sharpton, Ondrej Podlaha, Jen-Chieh Chuang, Yevgeniy Gindin, Robert P Myers, Rohit Loomba | Therapeutic Advances In Gastroenterology | 2022-05-18 | Abstract | |
| Biosynthesis of Guanitoxin Enables Global Environmental Detection in Freshwater Cyanobacteria. | Stella T Lima, Timothy R Fallon, Jennifer L Cordoza, Jonathan R Chekan, Endrews Delbaje, Austin R Hopiavuori, Danillo O Alvarenga, Steffaney M Wood, Hanna Luhavaya, Jackson T Baumgartner, Felipe A Dörr, Augusto Etchegaray, Ernani Pinto, Shaun M K McKinnie, Marli F Fiore, Bradley S Moore | Journal Of The American Chemical Society | 2022-05-18 | Abstract | |
| Virologic and Immunologic Characterization of Coronavirus Disease 2019 Recrudescence After Nirmatrelvir/Ritonavir Treatment. | Aaron F Carlin, Alex E Clark, Antoine Chaillon, Aaron F Garretson, William Bray, Magali Porrachia, AsherLev T Santos, Tariq M Rana, Davey M Smith | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-05-16 | Abstract | |
| SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with sp. | Victor J Cantú, Rodolfo A Salido, Shi Huang, Gibraan Rahman, Rebecca Tsai, Holly Valentine, Celestine G Magallanes, Stefan Aigner, Nathan A Baer, Tom Barber, Pedro Belda-Ferre, Maryann Betty, MacKenzie Bryant, Martín Casas Maya, Anelizze Castro-Martínez, Marisol Chacón, Willi Cheung, Evelyn S Crescini, Peter De Hoff, Emily Eisner, Sawyer Farmer, Abbas Hakim, Laura Kohn, Alma L Lastrella, Elijah S Lawrence, Sydney C Morgan, Toan T Ngo, Alhakam Nouri, Ashley Plascencia, Christopher A Ruiz, Shashank Sathe, Phoebe Seaver, Tara Shwartz, Elizabeth W Smoot, R Tyler Ostrander, Thomas Valles, Gene W Yeo, Louise C Laurent, Rebecca Fielding-Miller, Rob Knight | MSystems | 2022-05-16 | Abstract | |
| Nitrite Generating and Depleting Capacity of the Oral Microbiome and Cardiometabolic Risk: Results from ORIGINS. | Charlene E Goh, Bruno Bohn, Clarisse Marotz, Rebecca Molinsky, Sumith Roy, Bruce J Paster, Ching-Yuan Chen, Michael Rosenbaum, Melana Yuzefpolskaya, Paolo C Colombo, Moïse Desvarieux, Panos N Papapanou, David R Jacobs, Rob Knight, Ryan T Demmer | Journal Of The American Heart Association | 2022-05-16 | Abstract | |
| An Artificial Intelligence-guided signature reveals the shared host immune response in MIS-C and Kawasaki disease. | Pradipta Ghosh, Gajanan D Katkar, Chisato Shimizu, Jihoon Kim, Soni Khandelwal, Adriana H Tremoulet, John T Kanegaye, , Joseph Bocchini, Soumita Das, Jane C Burns, Debashis Sahoo | Nature Communications | 2022-05-16 | Abstract | |
| Case Series of Successful Intravenous Immunoglobulin (IVIG) Treatment in 4 Pregnant Patients with Severe COVID-19-Induced Hypoxia. | Matthew Geriak, Dominic McGrosso, David J Gonzalez, Matthew Dehner, George Sakoulas | The American Journal Of Case Reports | 2022-05-14 | Abstract | |
| SARS-CoV-2 Seroconversion in an Adult Horse with Direct Contact to a COVID-19 Individual. | Nicola Pusterla, Antoine Chaillon, Caroline Ignacio, Davey M Smith, Samantha Barnum, Kaila O Y Lawton, Greg Smith, Bradley Pickering | Viruses | 2022-05-14 | Abstract | |
| Changes in Gut Microbiome Composition with Healthy Aging in Humans: Links to Vascular Endothelial Function. | Nathan Greenberg, Marissa L Burnsed-Torres, Antonio Gonzalez, Abigail G Casso, Kara L Lubieniecki, Brian P Ziemba, Matthew J Rossman, Emily C Adam, Michel Chonchol, Kevin P Davy, Rob Knight, Douglas R Seals, Vienna E Brunt | FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology | 2022-05-13 | Abstract | |
| Evaluation of Small Molecule Inhibitors of Pseudomonas Virulence factor LasB as Non-Traditional Immunotherapeutics. | Sophia R Chou, Doris L LaRock, Joshua Sun, Victor Nizet, Julia K Bohannon, Christopher N LaRock | FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology | 2022-05-13 | Abstract | |
| Insights from C. elegans into Microsporidia Biology and Host-Pathogen Relationships. | Eillen Tecle, Emily R Troemel | Experientia Supplementum (2012) | 2022-05-11 | Abstract | |
| Variation in Survival and Gut Microbiome Composition of Hatchery-Grown Native Oysters at Various Locations within the Puget Sound. | Emily Kunselman, Jeremiah J Minich, Micah Horwith, Jack A Gilbert, Eric E Allen | Microbiology Spectrum | 2022-05-10 | Abstract | |
| The Impact of Exclusive Enteral Nutrition on the Gut Microbiome of Children with Medical Complexity. | Julia Beauchamp-Walters, Gajender Aleti, Lourdes Herrera, Justine Debelius, Natalie Lima, Pritha Dalal, Suzi Hong, Rob Knight, Kyung E Rhee | JPEN. Journal Of Parenteral And Enteral Nutrition | 2022-05-08 | Abstract | |
| Clinical Features of Patients Hospitalized for All Routes of Anthrax, 1880-2018: A Systematic Review. | Katherine Hendricks, Marissa K Person, John S Bradley, Thitipong Mongkolrattanothai, Nathaniel Hupert, Peter Eichacker, Arthur M Friedlander, William A Bower | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2022-05-06 | Abstract | |
| Cerebrospinal Fluid Shunt Infections: A Multicenter Pediatric Study. | Alastair McAlpine, Joan L Robinson, Michelle Barton, Archana Balamohan, H Dele Davies, Gwenn Skar, Marie-Astrid Lefebvre, Ahmed Almadani, Dolores Freire, Nicole Le Saux, Jennifer Bowes, Jocelyn A Srigley, Patrick Passarelli, John Bradley, Sarah Khan, Rupeena Purewal, Isabelle Viel-Thériault, Adrianna Ranger, Michael T Hawkes, | The Pediatric Infectious Disease Journal | 2022-05-06 | Abstract | |
| Zebrafish: an underutilized tool for discovery in host-microbe interactions. | Alexandra Stream, Cressida A Madigan | Trends In Immunology | 2022-05-05 | Abstract | |
| A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli. | Irina A Rodionova, Ye Gao, Jonathan Monk, Ying Hefner, Nicholas Wong, Richard Szubin, Hyun Gyu Lim, Dmitry A Rodionov, Zhongge Zhang, Milton H Saier, Bernhard O Palsson | Scientific Reports | 2022-05-04 | Abstract | |
| Subcellular organization of viral particles during maturation of nucleus-forming jumbo phage. | Vorrapon Chaikeeratisak, Kanika Khanna, Katrina T Nguyen, MacKennon E Egan, Eray Enustun, Emily Armbruster, Jina Lee, Kit Pogliano, Elizabeth Villa, Joe Pogliano | Science Advances | 2022-05-04 | Abstract | |
| Author Correction: Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly. | Mahul Chakraborty, Arunachalam Ramaiah, Adriana Adolfi, Paige Halas, Bhagyashree Kaduskar, Luna Thanh Ngo, Suvratha Jayaprasad, Kiran Paul, Saurabh Whadgar, Subhashini Srinivasan, Suresh Subramani, Ethan Bier, Anthony A James, J J Emerson | BMC Biology | 2022-05-02 | Abstract | |
| Transcription Factor 4 loss-of-function is associated with deficits in progenitor proliferation and cortical neuron content. | Fabio Papes, Antonio P Camargo, Janaina S de Souza, Vinicius M A Carvalho, Ryan A Szeto, Erin LaMontagne, José R Teixeira, Simoni H Avansini, Sandra M Sánchez-Sánchez, Thiago S Nakahara, Carolina N Santo, Wei Wu, Hang Yao, Barbara M P Araújo, Paulo E N F Velho, Gabriel G Haddad, Alysson R Muotri | Nature Communications | 2022-05-02 | Abstract | |
| Localized electrical stimulation triggers cell-type-specific proliferation in biofilms. | Colin J Comerci, Alan L Gillman, Leticia Galera-Laporta, Edgar Gutierrez, Alex Groisman, Joseph W Larkin, Jordi Garcia-Ojalvo, Gürol M Süel | Cell Systems | 2022-05-02 | Abstract | |
| Blockade of organic anion transport in humans after treatment with the drug probenecid leads to major metabolic alterations in plasma and urine. | Jeffry C Granados, Vibha Bhatnagar, Sanjay K Nigam | Clinical Pharmacology And Therapeutics | 2022-05-01 | Abstract | |
| DEPP: Deep Learning Enables Extending Species Trees using Single Genes. | Yueyu Jiang, Metin Balaban, Qiyun Zhu, Siavash Mirarab | Systematic Biology | 2022-04-29 | Abstract | |
| Outcomes and risk factors for death among hospitalized children and adolescents with kidney diseases and COVID-19: an analysis of a nationwide database. | Mariana A Vasconcelos, Ana Carmen Q Mendonça, Enrico A Colosimo, Noureddin Nourbakhsh, Hercílio Martelli-Júnior, Ludmila R Silva, Maria Christina L Oliveira, Clara C Pinhati, Robert H Mak, Ana Cristina Simões E Silva, Eduardo A Oliveira | Pediatric Nephrology (Berlin, Germany) | 2022-04-29 | Abstract | |
| Outcomes and risk factors of death among hospitalized children and adolescents with obesity and COVID-19 in Brazil: An analysis of a nationwide database. | Ana Cristina Simões E Silva, Mariana A Vasconcelos, Enrico A Colosimo, Ana Carmen Q Mendonça, Hercílio Martelli-Júnior, Ludmila R Silva, Maria Christina L Oliveira, Clara C Pinhati, Robert H Mak, Eduardo A Oliveira | Pediatric Obesity | 2022-04-28 | Abstract | |
| Effects of 'Healthy' Fecal Microbiota Transplantation against the Deterioration of Depression in Fawn-Hooded Rats. | Bing Hu, Promi Das, Xianglin Lv, Meng Shi, Jiye Aa, Kun Wang, Liping Duan, Jack A Gilbert, Yong Nie, Xiao-Lei Wu | MSystems | 2022-04-28 | Abstract | |
| Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype. | Cameron Martino, Daniel McDonald, Kalen Cantrell, Amanda Hazel Dilmore, Yoshiki Vázquez-Baeza, Liat Shenhav, Justin P Shaffer, Gibraan Rahman, George Armstrong, Celeste Allaband, Se Jin Song, Rob Knight | MSystems | 2022-04-28 | Abstract | |
| Associations between maternal obesity and offspring gut microbiome in the first year of life. | Stephanie P Gilley, Meghan L Ruebel, Clark Sims, Ying Zhong, Donald Turner, Renny S Lan, Lindsay M Pack, Brian D Piccolo, Sree V Chintapalli, Ann Abraham, Lars Bode, Aline Andres, Kartik Shankar | Pediatric Obesity | 2022-04-27 | Abstract | |
| Intestinal homeostasis and inflammation: gut microbiota at the crossroads of pancreas-intestinal barrier axis. | Zhongwei Zhang, Izumi Tanaka, Zhen Pan, Peter B Ernst, Hiroshi Kiyono, Yosuke Kurashima | European Journal Of Immunology | 2022-04-27 | Abstract | |
| Systems biology approach to functionally assess the pangenome reveals genetic diversity with discriminatory power. | Charles J Norsigian, Heather A Danhof, Colleen K Brand, Firas S Midani, Jared T Broddrick, Tor C Savidge, Robert A Britton, Bernhard O Palsson, Jennifer K Spinler, Jonathan M Monk | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2022-04-27 | Abstract | |
| Nutrient Gradients Mediate Complex Colony-Level Antibiotic Responses in Structured Microbial Populations. | Mirjana Stevanovic, Thomas Boukéké-Lesplulier, Lukas Hupe, Jeff Hasty, Philip Bittihn, Daniel Schultz | Frontiers In Microbiology | 2022-04-27 | Abstract | |
| Machine-learning from Pseudomonas putida KT2440 transcriptomes reveals its transcriptional regulatory network. | Hyun Gyu Lim, Kevin Rychel, Anand V Sastry, Gayle J Bentley, Joshua Mueller, Heidi S Schindel, Peter E Larsen, Philip D Laible, Adam M Guss, Wei Niu, Christopher W Johnson, Gregg T Beckham, Adam M Feist, Bernhard O Palsson | Metabolic Engineering | 2022-04-27 | Abstract | |
| Comparative Genomics of Synechococcus elongatus Explains the Phenotypic Diversity of the Strains. | Marie Adomako, Dustin Ernst, Ryan Simkovsky, Yi-Yun Chao, Jingtong Wang, Mingxu Fang, Christiane Bouchier, Rocio Lopez-Igual, Didier Mazel, Muriel Gugger, Susan S Golden | MBio | 2022-04-27 | Abstract | |
| FastViFi: Fast and accurate detection of (Hybrid) Viral DNA and RNA. | Sara Javadzadeh, Utkrisht Rajkumar, Nam Nguyen, Shahab Sarmashghi, Jens Luebeck, Jingbo Shang, Vineet Bafna | NAR Genomics And Bioinformatics | 2022-04-26 | Abstract | |
| Antibiotic Activity Altered by Competitive Interactions Between Two Coral Reef-Associated Bacteria. | Samantha J Mascuch, Alyssa Demko, Samson Viulu, Joape Ginigini, Katy Soapi, Paul Jensen, Julia Kubanek | Microbial Ecology | 2022-04-23 | Abstract | |
| foodMASST a mass spectrometry search tool for foods and beverages. | Kiana A West, Robin Schmid, Julia M Gauglitz, Mingxun Wang, Pieter C Dorrestein | NPJ Science Of Food | 2022-04-20 | Abstract | |
| Early microbial markers of periodontal and cardiometabolic diseases in ORIGINS. | Clarisse Marotz, Rebecca Molinsky, Cameron Martino, Bruno Bohn, Sumith Roy, Michael Rosenbaum, Moïse Desvarieux, Melana Yuzefpolskaya, Bruce J Paster, David R Jacobs, Paolo C Colombo, Panos N Papapanou, Rob Knight, Ryan T Demmer | NPJ Biofilms And Microbiomes | 2022-04-20 | Abstract | |
| The impact of maternal asthma on the preterm infants' gut metabolome and microbiome (MAP study). | Shiyu S Bai-Tong, Megan S Thoemmes, Kelly C Weldon, Diba Motazavi, Jessica Kitsen, Shalisa Hansen, Annalee Furst, Bob Geng, Se Jin Song, Jack A Gilbert, Lars Bode, Pieter C Dorrestein, Rob Knight, Sydney A Leibel, Sandra L Leibel | Scientific Reports | 2022-04-19 | Abstract | |
| Memory B-Cell Development After Asymptomatic or Mild Symptomatic SARS-CoV-2 Infection. | Yu Kato, Nathaniel I Bloom, Peifang Sun, Corey A Balinsky, Qi Qiu, Ying Cheng, Vihasi Jani, Megan A Schilling, Carl W Goforth, Dawn L Weir, Irene Ramos, Stuart C Sealfon, Andrew G Letizia, Shane Crotty | The Journal Of Infectious Diseases | 2022-04-17 | Abstract | |
| Menopause Is Associated with an Altered Gut Microbiome and Estrobolome, with Implications for Adverse Cardiometabolic Risk in the Hispanic Community Health Study/Study of Latinos. | Brandilyn A Peters, Juan Lin, Qibin Qi, Mykhaylo Usyk, Carmen R Isasi, Yasmin Mossavar-Rahmani, Carol A Derby, Nanette Santoro, Krista M Perreira, Martha L Daviglus, Michelle A Kominiarek, Jianwen Cai, Rob Knight, Robert D Burk, Robert C Kaplan | MSystems | 2022-04-13 | Abstract | |
| Impact of Clopidogrel on Clinical Outcomes in Patients with Staphylococcus aureus Bacteremia: a National Retrospective Cohort Study. | Aisling R Caffrey, Haley J Appaneal, Kerry L LaPlante, Vrishali V Lopes, Erlinda R Ulloa, Victor Nizet, George Sakoulas | Antimicrobial Agents And Chemotherapy | 2022-04-13 | Abstract | |
| Symptom improvement with mirabegron treatment is associated with urobiome changes in adult women. | Thomas Halverson, Elizabeth R Mueller, Linda Brubaker, Alan J Wolfe | International Urogynecology Journal | 2022-04-12 | Abstract | |
| P53 deficiency affects cholesterol esterification to exacerbate hepatocarcinogenesis. | Yahui Zhu, Li Gu, Xi Lin, Xinyi Zhou, Bingjun Lu, Cheng Liu, Yajun Li, Edward V Prochownik, Michael Karin, Fubing Wang, Youjun Li | Hepatology (Baltimore, Md.) | 2022-04-10 | Abstract | |
| Unlocking capacities of genomics for the COVID-19 response and future pandemics. | Sergey Knyazev, Karishma Chhugani, Varuni Sarwal, Ram Ayyala, Harman Singh, Smruthi Karthikeyan, Dhrithi Deshpande, Pelin Icer Baykal, Zoia Comarova, Angela Lu, Yuri Porozov, Tetyana I Vasylyeva, Joel O Wertheim, Braden T Tierney, Charles Y Chiu, Ren Sun, Aiping Wu, Malak S Abedalthagafi, Victoria M Pak, Shivashankar H Nagaraj, Adam L Smith, Pavel Skums, Bogdan Pasaniuc, Andrey Komissarov, Christopher E Mason, Eric Bortz, Philippe Lemey, Fyodor Kondrashov, Niko Beerenwinkel, Tommy Tsan-Yuk Lam, Nicholas C Wu, Alex Zelikovsky, Rob Knight, Keith A Crandall, Serghei Mangul | Nature Methods | 2022-04-08 | Abstract | |
| Mapping genomic loci implicates genes and synaptic biology in schizophrenia. | Vassily Trubetskoy, Antonio F Pardiñas, Ting Qi, Georgia Panagiotaropoulou, Swapnil Awasthi, Tim B Bigdeli, Julien Bryois, Chia-Yen Chen, Charlotte A Dennison, Lynsey S Hall, Max Lam, Kyoko Watanabe, Oleksandr Frei, Tian Ge, Janet C Harwood, Frank Koopmans, Sigurdur Magnusson, Alexander L Richards, Julia Sidorenko, Yang Wu, Jian Zeng, Jakob Grove, Minsoo Kim, Zhiqiang Li, Georgios Voloudakis, Wen Zhang, Mark Adams, Ingrid Agartz, Elizabeth G Atkinson, Esben Agerbo, Mariam Al Eissa, Margot Albus, Madeline Alexander, Behrooz Z Alizadeh, Köksal Alptekin, Thomas D Als, Farooq Amin, Volker Arolt, Manuel Arrojo, Lavinia Athanasiu, Maria Helena Azevedo, Silviu A Bacanu, Nicholas J Bass, Martin Begemann, Richard A Belliveau, Judit Bene, Beben Benyamin, Sarah E Bergen, Giuseppe Blasi, Julio Bobes, Stefano Bonassi, Alice Braun, Rodrigo Affonseca Bressan, Evelyn J Bromet, Richard Bruggeman, Peter F Buckley, Randy L Buckner, Jonas Bybjerg-Grauholm, Wiepke Cahn, Murray J Cairns, Monica E Calkins, Vaughan J Carr, David Castle, Stanley V Catts, Kimberley D Chambert, Raymond C K Chan, Boris Chaumette, Wei Cheng, Eric F C Cheung, Siow Ann Chong, David Cohen, Angèle Consoli, Quirino Cordeiro, Javier Costas, Charles Curtis, Michael Davidson, Kenneth L Davis, Lieuwe de Haan, Franziska Degenhardt, Lynn E DeLisi, Ditte Demontis, Faith Dickerson, Dimitris Dikeos, Timothy Dinan, Srdjan Djurovic, Jubao Duan, Giuseppe Ducci, Frank Dudbridge, Johan G Eriksson, Lourdes Fañanás, Stephen V Faraone, Alessia Fiorentino, Andreas Forstner, Josef Frank, Nelson B Freimer, Menachem Fromer, Alessandra Frustaci, Ary Gadelha, Giulio Genovese, Elliot S Gershon, Marianna Giannitelli, Ina Giegling, Paola Giusti-Rodríguez, Stephanie Godard, Jacqueline I Goldstein, Javier González Peñas, Ana González-Pinto, Srihari Gopal, Jacob Gratten, Michael F Green, Tiffany A Greenwood, Olivier Guillin, Sinan Gülöksüz, Raquel E Gur, Ruben C Gur, Blanca Gutiérrez, Eric Hahn, Hakon Hakonarson, Vahram Haroutunian, Annette M Hartmann, Carol Harvey, Caroline Hayward, Frans A Henskens, Stefan Herms, Per Hoffmann, Daniel P Howrigan, Masashi Ikeda, Conrad Iyegbe, Inge Joa, Antonio Julià, Anna K Kähler, Tony Kam-Thong, Yoichiro Kamatani, Sena Karachanak-Yankova, Oussama Kebir, Matthew C Keller, Brian J Kelly, Andrey Khrunin, Sung-Wan Kim, Janis Klovins, Nikolay Kondratiev, Bettina Konte, Julia Kraft, Michiaki Kubo, Vaidutis Kučinskas, Zita Ausrele Kučinskiene, Agung Kusumawardhani, Hana Kuzelova-Ptackova, Stefano Landi, Laura C Lazzeroni, Phil H Lee, Sophie E Legge, Douglas S Lehrer, Rebecca Lencer, Bernard Lerer, Miaoxin Li, Jeffrey Lieberman, Gregory A Light, Svetlana Limborska, Chih-Min Liu, Jouko Lönnqvist, Carmel M Loughland, Jan Lubinski, Jurjen J Luykx, Amy Lynham, Milan Macek, Andrew Mackinnon, Patrik K E Magnusson, Brion S Maher, Wolfgang Maier, Dolores Malaspina, Jacques Mallet, Stephen R Marder, Sara Marsal, Alicia R Martin, Lourdes Martorell, Manuel Mattheisen, Robert W McCarley, Colm McDonald, John J McGrath, Helena Medeiros, Sandra Meier, Bela Melegh, Ingrid Melle, Raquelle I Mesholam-Gately, Andres Metspalu, Patricia T Michie, Lili Milani, Vihra Milanova, Marina Mitjans, Espen Molden, Esther Molina, María Dolores Molto, Valeria Mondelli, Carmen Moreno, Christopher P Morley, Gerard Muntané, Kieran C Murphy, Inez Myin-Germeys, Igor Nenadić, Gerald Nestadt, Liene Nikitina-Zake, Cristiano Noto, Keith H Nuechterlein, Niamh Louise O'Brien, F Anthony O'Neill, Sang-Yun Oh, Ann Olincy, Vanessa Kiyomi Ota, Christos Pantelis, George N Papadimitriou, Mara Parellada, Tiina Paunio, Renata Pellegrino, Sathish Periyasamy, Diana O Perkins, Bruno Pfuhlmann, Olli Pietiläinen, Jonathan Pimm, David Porteous, John Powell, Diego Quattrone, Digby Quested, Allen D Radant, Antonio Rampino, Mark H Rapaport, Anna Rautanen, Abraham Reichenberg, Cheryl Roe, Joshua L Roffman, Julian Roth, Matthias Rothermundt, Bart P F Rutten, Safaa Saker-Delye, Veikko Salomaa, Julio Sanjuan, Marcos Leite Santoro, Adam Savitz, Ulrich Schall, Rodney J Scott, Larry J Seidman, Sally Isabel Sharp, Jianxin Shi, Larry J Siever, Engilbert Sigurdsson, Kang Sim, Nora Skarabis, Petr Slominsky, Hon-Cheong So, Janet L Sobell, Erik Söderman, Helen J Stain, Nils Eiel Steen, Agnes A Steixner-Kumar, Elisabeth Stögmann, William S Stone, Richard E Straub, Fabian Streit, Eric Strengman, T Scott Stroup, Mythily Subramaniam, Catherine A Sugar, Jaana Suvisaari, Dragan M Svrakic, Neal R Swerdlow, Jin P Szatkiewicz, Thi Minh Tam Ta, Atsushi Takahashi, Chikashi Terao, Florence Thibaut, Draga Toncheva, Paul A Tooney, Silvia Torretta, Sarah Tosato, Gian Battista Tura, Bruce I Turetsky, Alp Üçok, Arne Vaaler, Therese van Amelsvoort, Ruud van Winkel, Juha Veijola, John Waddington, Henrik Walter, Anna Waterreus, Bradley T Webb, Mark Weiser, Nigel M Williams, Stephanie H Witt, Brandon K Wormley, Jing Qin Wu, Zhida Xu, Robert Yolken, Clement C Zai, Wei Zhou, Feng Zhu, Fritz Zimprich, Eşref Cem Atbaşoğlu, Muhammad Ayub, Christian Benner, Alessandro Bertolino, Donald W Black, Nicholas J Bray, Gerome Breen, Nancy G Buccola, William F Byerley, Wei J Chen, C Robert Cloninger, Benedicto Crespo-Facorro, Gary Donohoe, Robert Freedman, Cherrie Galletly, Michael J Gandal, Massimo Gennarelli, David M Hougaard, Hai-Gwo Hwu, Assen V Jablensky, Steven A McCarroll, Jennifer L Moran, Ole Mors, Preben B Mortensen, Bertram Müller-Myhsok, Amanda L Neil, Merete Nordentoft, Michele T Pato, Tracey L Petryshen, Matti Pirinen, Ann E Pulver, Thomas G Schulze, Jeremy M Silverman, Jordan W Smoller, Eli A Stahl, Debby W Tsuang, Elisabet Vilella, Shi-Heng Wang, Shuhua Xu, , , , , Rolf Adolfsson, Celso Arango, Bernhard T Baune, Sintia Iole Belangero, Anders D Børglum, David Braff, Elvira Bramon, Joseph D Buxbaum, Dominique Campion, Jorge A Cervilla, Sven Cichon, David A Collier, Aiden Corvin, David Curtis, Marta Di Forti, Enrico Domenici, Hannelore Ehrenreich, Valentina Escott-Price, Tõnu Esko, Ayman H Fanous, Anna Gareeva, Micha Gawlik, Pablo V Gejman, Michael Gill, Stephen J Glatt, Vera Golimbet, Kyung Sue Hong, Christina M Hultman, Steven E Hyman, Nakao Iwata, Erik G Jönsson, René S Kahn, James L Kennedy, Elza Khusnutdinova, George Kirov, James A Knowles, Marie-Odile Krebs, Claudine Laurent-Levinson, Jimmy Lee, Todd Lencz, Douglas F Levinson, Qingqin S Li, Jianjun Liu, Anil K Malhotra, Dheeraj Malhotra, Andrew McIntosh, Andrew McQuillin, Paulo R Menezes, Vera A Morgan, Derek W Morris, Bryan J Mowry, Robin M Murray, Vishwajit Nimgaonkar, Markus M Nöthen, Roel A Ophoff, Sara A Paciga, Aarno Palotie, Carlos N Pato, Shengying Qin, Marcella Rietschel, Brien P Riley, Margarita Rivera, Dan Rujescu, Meram C Saka, Alan R Sanders, Sibylle G Schwab, Alessandro Serretti, Pak C Sham, Yongyong Shi, David St Clair, Hreinn Stefánsson, Kari Stefansson, Ming T Tsuang, Jim van Os, Marquis P Vawter, Daniel R Weinberger, Thomas Werge, Dieter B Wildenauer, Xin Yu, Weihua Yue, Peter A Holmans, Andrew J Pocklington, Panos Roussos, Evangelos Vassos, Matthijs Verhage, Peter M Visscher, Jian Yang, Danielle Posthuma, Ole A Andreassen, Kenneth S Kendler, Michael J Owen, Naomi R Wray, Mark J Daly, Hailiang Huang, Benjamin M Neale, Patrick F Sullivan, Stephan Ripke, James T R Walters, Michael C O'Donovan, | Nature | 2022-04-08 | Abstract | |
| Sialoglycan binding patterns of bacterial AB toxin B subunits correlate with host range and toxicity, indicating evolution independent of A subunits. | Naazneen Khan, Aniruddha Sasmal, Zahra Khedri, Patrick Secrest, Andrea Verhagen, Saurabh Srivastava, Nissi Varki, Xi Chen, Hai Yu, Travis Beddoe, Adrienne W Paton, James C Paton, Ajit Varki | The Journal Of Biological Chemistry | 2022-04-07 | Abstract | |
| Microbe Profile: : natural products and the evolution of a unique marine bacterium. | Paul R Jensen | Microbiology (Reading, England) | 2022-04-05 | Abstract | |
| Involvement of Qa-1/HLA-E-Restricted CD8+ T Cells in Anti-Microbe and Anti-Cancer Immunity as Well as in Immune Regulation. | Huiming Sheng, Suryasarathi Dasgupta, Vipin Chaturvedi Kumar | Critical Reviews In Immunology | 2022-04-05 | Abstract | |
| Factors associated with COVID-19 vaccine intent among Latino SNAP participants in Southern California. | Vanessa P Scott, Sarah Hiller-Venegas, Kate Edra, Joe Prickitt, Yesenia Esquivel, Blanca Melendrez, Kyung E Rhee | BMC Public Health | 2022-04-05 | Abstract | |
| Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy. | Qiyun Zhu, Shi Huang, Antonio Gonzalez, Imran McGrath, Daniel McDonald, Niina Haiminen, George Armstrong, Yoshiki Vázquez-Baeza, Julian Yu, Justin Kuczynski, Gregory D Sepich-Poore, Austin D Swafford, Promi Das, Justin P Shaffer, Franck Lejzerowicz, Pedro Belda-Ferre, Aki S Havulinna, Guillaume Méric, Teemu Niiranen, Leo Lahti, Veikko Salomaa, Ho-Cheol Kim, Mohit Jain, Michael Inouye, Jack A Gilbert, Rob Knight | MSystems | 2022-04-04 | Abstract | |
| Simple and practical sialoglycan encoding system reveals vast diversity in nature and identifies a universal sialoglycan-recognizing probe derived from AB5 toxin B subunits. | Aniruddha Sasmal, Naazneen Khan, Zahra Khedri, Benjamin P Kellman, Saurabh Srivastava, Andrea Verhagen, Hai Yu, Anders Bech Bruntse, Sandra Diaz, Nissi Varki, Travis Beddoe, Adrienne W Paton, James C Paton, Xi Chen, Nathan E Lewis, Ajit Varki | Glycobiology | 2022-04-04 | Abstract | |
| Intestinal virome in patients with alcohol use disorder and after abstinence. | Cynthia L Hsu, Xinlian Zhang, Lu Jiang, Sonja Lang, Phillipp Hartmann, David Pride, Derrick E Fouts, Peter Stärkel, Bernd Schnabl | Hepatology Communications | 2022-04-02 | Abstract | |
| Complete genomic and epigenetic maps of human centromeres. | Nicolas Altemose, Glennis A Logsdon, Andrey V Bzikadze, Pragya Sidhwani, Sasha A Langley, Gina V Caldas, Savannah J Hoyt, Lev Uralsky, Fedor D Ryabov, Colin J Shew, Michael E G Sauria, Matthew Borchers, Ariel Gershman, Alla Mikheenko, Valery A Shepelev, Tatiana Dvorkina, Olga Kunyavskaya, Mitchell R Vollger, Arang Rhie, Ann M McCartney, Mobin Asri, Ryan Lorig-Roach, Kishwar Shafin, Julian K Lucas, Sergey Aganezov, Daniel Olson, Leonardo Gomes de Lima, Tamara Potapova, Gabrielle A Hartley, Marina Haukness, Peter Kerpedjiev, Fedor Gusev, Kristof Tigyi, Shelise Brooks, Alice Young, Sergey Nurk, Sergey Koren, Sofie R Salama, Benedict Paten, Evgeny I Rogaev, Aaron Streets, Gary H Karpen, Abby F Dernburg, Beth A Sullivan, Aaron F Straight, Travis J Wheeler, Jennifer L Gerton, Evan E Eichler, Adam M Phillippy, Winston Timp, Megan Y Dennis, Rachel J O'Neill, Justin M Zook, Michael C Schatz, Pavel A Pevzner, Mark Diekhans, Charles H Langley, Ivan A Alexandrov, Karen H Miga | Science (New York, N.Y.) | 2022-04-01 | Abstract | |
| The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients. | Carlos G Gonzalez, Robert H Mills, Melissa C Kordahi, Marvic Carrillo-Terrazas, Henrry Secaira-Morocho, Christella E Widjaja, Matthew S Tsai, Yash Mittal, Brian A Yee, Fernando Vargas, Kelly Weldon, Julia M Gauglitz, Clara Delaroque, Consuelo Sauceda, Leigh-Ana Rossitto, Gail Ackermann, Gregory Humphrey, Austin D Swafford, Corey A Siegel, Jay C Buckey, Laura E Raffals, Charlotte Sadler, Peter Lindholm, Kathleen M Fisch, Mark Valaseck, Arief Suriawinata, Gene W Yeo, Pradipta Ghosh, John T Chang, Hiutung Chu, Pieter Dorrestein, Qiyun Zhu, Benoit Chassaing, Rob Knight, David J Gonzalez, Parambir S Dulai | Cellular And Molecular Gastroenterology And Hepatology | 2022-04-01 | Abstract | |
| Preserved SARS-CoV-2 Vaccine Cell-Mediated Immunogenicity in Patients With Inflammatory Bowel Disease on Immune-Modulating Therapies. | Brigid S Boland, Benjamin Goodwin, Zeli Zhang, Nathaniel Bloom, Yu Kato, Jennifer Neill, Helen Le, Tiffani Tysl, Angelina E Collins, Parambir S Dulai, Siddharth Singh, Nghia H Nguyen, Alba Grifoni, Alessandro Sette, Daniela Weiskopf, John T Chang, Jennifer M Dan | Clinical And Translational Gastroenterology | 2022-04-01 | Abstract | |
| Mistaken MIS-C: A Case Series of Bacterial Enteritis Mimicking MIS-C. | Zephyr D Dworsky, Jordan E Roberts, Mary Beth F Son, Adriana H Tremoulet, Jane W Newburger, Jane C Burns | The Pediatric Infectious Disease Journal | 2022-04-01 | Abstract | |
| Machine learning from Pseudomonas aeruginosa transcriptomes identifies independently modulated sets of genes associated with known transcriptional regulators. | Akanksha Rajput, Hannah Tsunemoto, Anand V Sastry, Richard Szubin, Kevin Rychel, Joseph Sugie, Joe Pogliano, Bernhard O Palsson | Nucleic Acids Research | 2022-03-31 | Abstract | |
| The complete sequence of a human genome. | Sergey Nurk, Sergey Koren, Arang Rhie, Mikko Rautiainen, Andrey V Bzikadze, Alla Mikheenko, Mitchell R Vollger, Nicolas Altemose, Lev Uralsky, Ariel Gershman, Sergey Aganezov, Savannah J Hoyt, Mark Diekhans, Glennis A Logsdon, Michael Alonge, Stylianos E Antonarakis, Matthew Borchers, Gerard G Bouffard, Shelise Y Brooks, Gina V Caldas, Nae-Chyun Chen, Haoyu Cheng, Chen-Shan Chin, William Chow, Leonardo G de Lima, Philip C Dishuck, Richard Durbin, Tatiana Dvorkina, Ian T Fiddes, Giulio Formenti, Robert S Fulton, Arkarachai Fungtammasan, Erik Garrison, Patrick G S Grady, Tina A Graves-Lindsay, Ira M Hall, Nancy F Hansen, Gabrielle A Hartley, Marina Haukness, Kerstin Howe, Michael W Hunkapiller, Chirag Jain, Miten Jain, Erich D Jarvis, Peter Kerpedjiev, Melanie Kirsche, Mikhail Kolmogorov, Jonas Korlach, Milinn Kremitzki, Heng Li, Valerie V Maduro, Tobias Marschall, Ann M McCartney, Jennifer McDaniel, Danny E Miller, James C Mullikin, Eugene W Myers, Nathan D Olson, Benedict Paten, Paul Peluso, Pavel A Pevzner, David Porubsky, Tamara Potapova, Evgeny I Rogaev, Jeffrey A Rosenfeld, Steven L Salzberg, Valerie A Schneider, Fritz J Sedlazeck, Kishwar Shafin, Colin J Shew, Alaina Shumate, Ying Sims, Arian F A Smit, Daniela C Soto, Ivan Sović, Jessica M Storer, Aaron Streets, Beth A Sullivan, Françoise Thibaud-Nissen, James Torrance, Justin Wagner, Brian P Walenz, Aaron Wenger, Jonathan M D Wood, Chunlin Xiao, Stephanie M Yan, Alice C Young, Samantha Zarate, Urvashi Surti, Rajiv C McCoy, Megan Y Dennis, Ivan A Alexandrov, Jennifer L Gerton, Rachel J O'Neill, Winston Timp, Justin M Zook, Michael C Schatz, Evan E Eichler, Karen H Miga, Adam M Phillippy | Science (New York, N.Y.) | 2022-03-31 | Abstract | |
| Obesity alters pathology and treatment response in inflammatory disease. | Sagar P Bapat, Caroline Whitty, Cody T Mowery, Yuqiong Liang, Arum Yoo, Zewen Jiang, Michael C Peters, Ling-Juan Zhang, Ian Vogel, Carmen Zhou, Vinh Q Nguyen, Zhongmei Li, Christina Chang, Wandi S Zhu, Annette T Hastie, Helen He, Xin Ren, Wenli Qiu, Sarah G Gayer, Chang Liu, Eun Jung Choi, Marlys Fassett, Jarish N Cohen, Jamie L Sturgill, Laura E Crotty Alexander, Jae Myoung Suh, Christopher Liddle, Annette R Atkins, Ruth T Yu, Michael Downes, Sihao Liu, Barbara S Nikolajczyk, In-Kyu Lee, Emma Guttman-Yassky, K Mark Ansel, Prescott G Woodruff, John V Fahy, Dean Sheppard, Richard L Gallo, Chun Jimmie Ye, Ronald M Evans, Ye Zheng, Alexander Marson | Nature | 2022-03-30 | Abstract | |
| Metabolic Profiling of Interspecies Interactions During Sessile Bacterial Cultivation Reveals Growth and Sporulation Induction in in Response to . | Jakob Herschend, Madeleine Ernst, Klaus Koren, Alexey V Melnik, Ricardo R da Silva, Henriette L Røder, Zacharias B V Damholt, Per Hägglund, Birte Svensson, Søren J Sørensen, Michael Kühl, Pieter C Dorrestein, Mette Burmølle | Frontiers In Cellular And Infection Microbiology | 2022-03-29 | Abstract | |
| Synthetic 3'-UTR valves for optimal metabolic flux control in Escherichia coli. | Donghui Choe, Kangsan Kim, Minjeong Kang, Seung-Goo Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho | Nucleic Acids Research | 2022-03-29 | Abstract | |
| Risk factors for COVID-19-related mortality in hospitalized children and adolescents with diabetes mellitus: An observational retrospective cohort study. | Eduardo A Oliveira, Robert H Mak, Enrico A Colosimo, Ana Carmen Q Mendonça, Mariana A Vasconcelos, Hercílio Martelli-Júnior, Ludmila R Silva, Maria Christina L Oliveira, Clara C Pinhati, Ana Cristina Simões E Silva | Pediatric Diabetes | 2022-03-27 | Abstract | |
| The ViReflow pipeline enables user friendly large scale viral consensus genome reconstruction. | Niema Moshiri, Kathleen M Fisch, Amanda Birmingham, Peter DeHoff, Gene W Yeo, Kristen Jepsen, Louise C Laurent, Rob Knight | Scientific Reports | 2022-03-24 | Abstract | |
| High Sensitivity, Rapid Detection of Virus in High Traffic Environments. | Lauren Waller, Zhilin Guo, Rui Tang, Zunming Zhang, Edward Wang, Jarred Yasuhara-Bell, Louise Laurent, Yu-Hwa Lo | Frontiers In Bioengineering And Biotechnology | 2022-03-24 | Abstract | |
| Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq. | Sara E Vazquez, Sabrina A Mann, Aaron Bodansky, Andrew F Kung, Zoe Quandt, Elise M N Ferré, Nils Landegren, Daniel Eriksson, Paul Bastard, Shen-Ying Zhang, Jamin Liu, Anthea Mitchell, Caleigh Mandel-Brehm, Brenda Miao, Gavin Sowa, Kelsey Zorn, Alice Y Chan, Chisato Shimizu, Adriana Tremoulet, Kara Lynch, Michael R Wilson, Olle Kampe, Kerry Dobbs, Ottavia M Delmonte, Luigi D Notarangelo, Jane C Burns, Jean-Laurent Casanova, Michail S Lionakis, Troy R Torgerson, Mark S Anderson, Joseph L DeRisi | BioRxiv : The Preprint Server For Biology | 2022-03-24 | Abstract | |
| Potent Activity of Ertapenem Plus Cefazolin Within Staphylococcal Biofilms: A Contributing Factor in the Treatment of Methicillin-Susceptible Endocarditis. | Jessica Gilbertie, Erlinda R Ulloa, Jennifer C Daiker, Khanh Nguyen, Dan Smelter, Warren Rose, Matthew Geriak, Lauren V Schnabel, Victor Nizet, George Sakoulas | Open Forum Infectious Diseases | 2022-03-23 | Abstract | |
| Early prediction of incident liver disease using conventional risk factors and gut-microbiome-augmented gradient boosting. | Yang Liu, Guillaume Méric, Aki S Havulinna, Shu Mei Teo, Fredrik Åberg, Matti Ruuskanen, Jon Sanders, Qiyun Zhu, Anupriya Tripathi, Karin Verspoor, Susan Cheng, Mohit Jain, Pekka Jousilahti, Yoshiki Vázquez-Baeza, Rohit Loomba, Leo Lahti, Teemu Niiranen, Veikko Salomaa, Rob Knight, Michael Inouye | Cell Metabolism | 2022-03-22 | Abstract | |
| Microbiomes of Hadal Fishes across Trench Habitats Contain Similar Taxa and Known Piezophiles. | Jessica M Blanton, Logan M Peoples, Mackenzie E Gerringer, Caroline M Iacuaniello, Natalya D Gallo, Thomas D Linley, Alan J Jamieson, Jeffrey C Drazen, Douglas H Bartlett, Eric E Allen | MSphere | 2022-03-21 | Abstract | |
| Machine Learning of All Mycobacterium tuberculosis H37Rv RNA-seq Data Reveals a Structured Interplay between Metabolism, Stress Response, and Infection. | Reo Yoo, Kevin Rychel, Saugat Poudel, Tahani Al-Bulushi, Yuan Yuan, Siddharth Chauhan, Cameron Lamoureux, Bernhard O Palsson, Anand Sastry | MSphere | 2022-03-21 | Abstract | |
| PI3K-α/mTOR/BRD4 inhibitor alone or in combination with other anti-virals blocks replication of SARS-CoV-2 and its variants of concern including Delta and Omicron. | Arpan Acharya, Anup S Pathania, Kabita Pandey, Michellie Thurman, Kendra R Vann, Tatiana G Kutateladze, Kishore B Challagundala, Donald L Durden, Siddappa N Byrareddy | Clinical And Translational Medicine | 2022-03-20 | Abstract | |
| Correction to: Precision medicine in perinatal depression in light of the human microbiome. | Beatriz Peñalver Bernabé, Pauline M Maki, Shannon M Dowty, Mariana Lauren Cralle Salas, Zainab Shah, Jack A Gilbert | Psychopharmacology | 2022-03-18 | Abstract | |
| Age-associated impairment of T cell immunity is linked to sex-dimorphic elevation of N-glycan branching. | Haik Mkhikian, Ken L Hayama, Khachik Khachikyan, Carey Li, Raymond W Zhou, Judy Pawling, Suzi Klaus, Phuong Q N Tran, Kim M Ly, Andrew D Gong, Hayk Saryan, Jasper L Hai, David Grigoryan, Philip L Lee, Barbara L Newton, Manuela Raffatellu, James W Dennis, Michael Demetriou | Nature Aging | 2022-03-18 | Abstract | |
| Global urban environmental change drives adaptation in white clover. | James S Santangelo, Rob W Ness, Beata Cohan, Connor R Fitzpatrick, Simon G Innes, Sophie Koch, Lindsay S Miles, Samreen Munim, Pedro R Peres-Neto, Cindy Prashad, Alex T Tong, Windsor E Aguirre, Philips O Akinwole, Marina Alberti, Jackie Álvarez, Jill T Anderson, Joseph J Anderson, Yoshino Ando, Nigel R Andrew, Fabio Angeoletto, Daniel N Anstett, Julia Anstett, Felipe Aoki-Gonçalves, A Z Andis Arietta, Mary T K Arroyo, Emily J Austen, Fernanda Baena-Díaz, Cory A Barker, Howard A Baylis, Julia M Beliz, Alfonso Benitez-Mora, David Bickford, Gabriela Biedebach, Gwylim S Blackburn, Mannfred M A Boehm, Stephen P Bonser, Dries Bonte, Jesse R Bragger, Cristina Branquinho, Kristien I Brans, Jorge C Bresciano, Peta D Brom, Anna Bucharova, Briana Burt, James F Cahill, Katelyn D Campbell, Elizabeth J Carlen, Diego Carmona, Maria Clara Castellanos, Giada Centenaro, Izan Chalen, Jaime A Chaves, Mariana Chávez-Pesqueira, Xiao-Yong Chen, Angela M Chilton, Kristina M Chomiak, Diego F Cisneros-Heredia, Ibrahim K Cisse, Aimée T Classen, Mattheau S Comerford, Camila Cordoba Fradinger, Hannah Corney, Andrew J Crawford, Kerri M Crawford, Maxime Dahirel, Santiago David, Robert De Haan, Nicholas J Deacon, Clare Dean, Ek Del-Val, Eleftherios K Deligiannis, Derek Denney, Margarete A Dettlaff, Michelle F DiLeo, Yuan-Yuan Ding, Moisés E Domínguez-López, Davide M Dominoni, Savannah L Draud, Karen Dyson, Jacintha Ellers, Carlos I Espinosa, Liliana Essi, Mohsen Falahati-Anbaran, Jéssica C F Falcão, Hayden T Fargo, Mark D E Fellowes, Raina M Fitzpatrick, Leah E Flaherty, Pádraic J Flood, María F Flores, Juan Fornoni, Amy G Foster, Christopher J Frost, Tracy L Fuentes, Justin R Fulkerson, Edeline Gagnon, Frauke Garbsch, Colin J Garroway, Aleeza C Gerstein, Mischa M Giasson, E Binney Girdler, Spyros Gkelis, William Godsoe, Anneke M Golemiec, Mireille Golemiec, César González-Lagos, Amanda J Gorton, Kiyoko M Gotanda, Gustaf Granath, Stephan Greiner, Joanna S Griffiths, Filipa Grilo, Pedro E Gundel, Benjamin Hamilton, Joyce M Hardin, Tianhua He, Stephen B Heard, André F Henriques, Melissa Hernández-Poveda, Molly C Hetherington-Rauth, Sarah J Hill, Dieter F Hochuli, Kathryn A Hodgins, Glen R Hood, Gareth R Hopkins, Katherine A Hovanes, Ava R Howard, Sierra C Hubbard, Carlos N Ibarra-Cerdeña, Carlos Iñiguez-Armijos, Paola Jara-Arancio, Benjamin J M Jarrett, Manon Jeannot, Vania Jiménez-Lobato, Mae Johnson, Oscar Johnson, Philip P Johnson, Reagan Johnson, Matthew P Josephson, Meen Chel Jung, Michael G Just, Aapo Kahilainen, Otto S Kailing, Eunice Kariñho-Betancourt, Regina Karousou, Lauren A Kirn, Anna Kirschbaum, Anna-Liisa Laine, Jalene M LaMontagne, Christian Lampei, Carlos Lara, Erica L Larson, Adrián Lázaro-Lobo, Jennifer H Le, Deleon S Leandro, Christopher Lee, Yunting Lei, Carolina A León, Manuel E Lequerica Tamara, Danica C Levesque, Wan-Jin Liao, Megan Ljubotina, Hannah Locke, Martin T Lockett, Tiffany C Longo, Jeremy T Lundholm, Thomas MacGillavry, Christopher R Mackin, Alex R Mahmoud, Isaac A Manju, Janine Mariën, D Nayeli Martínez, Marina Martínez-Bartolomé, Emily K Meineke, Wendy Mendoza-Arroyo, Thomas J S Merritt, Lila Elizabeth L Merritt, Giuditta Migiani, Emily S Minor, Nora Mitchell, Mitra Mohammadi Bazargani, Angela T Moles, Julia D Monk, Christopher M Moore, Paula A Morales-Morales, Brook T Moyers, Miriam Muñoz-Rojas, Jason Munshi-South, Shannon M Murphy, Maureen M Murúa, Melisa Neila, Ourania Nikolaidis, Iva Njunjić, Peter Nosko, Juan Núñez-Farfán, Takayuki Ohgushi, Kenneth M Olsen, Øystein H Opedal, Cristina Ornelas, Amy L Parachnowitsch, Aaron S Paratore, Angela M Parody-Merino, Juraj Paule, Octávio S Paulo, João Carlos Pena, Vera W Pfeiffer, Pedro Pinho, Anthony Piot, Ilga M Porth, Nicholas Poulos, Adriana Puentes, Jiao Qu, Estela Quintero-Vallejo, Steve M Raciti, Joost A M Raeymaekers, Krista M Raveala, Diana J Rennison, Milton C Ribeiro, Jonathan L Richardson, Gonzalo Rivas-Torres, Benjamin J Rivera, Adam B Roddy, Erika Rodriguez-Muñoz, José Raúl Román, Laura S Rossi, Jennifer K Rowntree, Travis J Ryan, Santiago Salinas, Nathan J Sanders, Luis Y Santiago-Rosario, Amy M Savage, J F Scheepens, Menno Schilthuizen, Adam C Schneider, Tiffany Scholier, Jared L Scott, Summer A Shaheed, Richard P Shefferson, Caralee A Shepard, Jacqui A Shykoff, Georgianna Silveira, Alexis D Smith, Lizet Solis-Gabriel, Antonella Soro, Katie V Spellman, Kaitlin Stack Whitney, Indra Starke-Ottich, Jörg G Stephan, Jessica D Stephens, Justyna Szulc, Marta Szulkin, Ayco J M Tack, Ítalo Tamburrino, Tayler D Tate, Emmanuel Tergemina, Panagiotis Theodorou, Ken A Thompson, Caragh G Threlfall, Robin M Tinghitella, Lilibeth Toledo-Chelala, Xin Tong, Léa Uroy, Shunsuke Utsumi, Martijn L Vandegehuchte, Acer VanWallendael, Paula M Vidal, Susana M Wadgymar, Ai-Ying Wang, Nian Wang, Montana L Warbrick, Kenneth D Whitney, Miriam Wiesmeier, J Tristian Wiles, Jianqiang Wu, Zoe A Xirocostas, Zhaogui Yan, Jiahe Yao, Jeremy B Yoder, Owen Yoshida, Jingxiong Zhang, Zhigang Zhao, Carly D Ziter, Matthew P Zuellig, Rebecca A Zufall, Juan E Zurita, Sharon E Zytynska, Marc T J Johnson | Science (New York, N.Y.) | 2022-03-17 | Abstract | |
| What If Not All Metabolites from the Uremic Toxin Generating Pathways Are Toxic? A Hypothesis. | Raymond Vanholder, Sanjay K Nigam, Stéphane Burtey, Griet Glorieux | Toxins | 2022-03-17 | Abstract | |
| Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases. | George Armstrong, Cameron Martino, Justin Morris, Behnam Khaleghi, Jaeyoung Kang, Jeff DeReus, Qiyun Zhu, Daniel Roush, Daniel McDonald, Antonio Gonazlez, Justin P Shaffer, Carolina Carpenter, Mehrbod Estaki, Stephen Wandro, Sean Eilert, Ameen Akel, Justin Eno, Ken Curewitz, Austin D Swafford, Niema Moshiri, Tajana Rosing, Rob Knight | MSystems | 2022-03-16 | Abstract |
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