These are the LAST 12 MONTHS of publications from the CMI membership team.
To see or search all of the publications, visit the archives page.
| Article | Authors | Journal | Date | Abstract | Reach |
|---|---|---|---|---|---|
| Wildfire-Driven Changes in Terrestrial Subsidies Shift Freshwater Microbial and Zooplankton Communities to New Compositional States. | Margaret Y Demmel, Christopher B Wall, Cody J Spiegel, Natalia Erazo, Evelyn M Diaz, Madeline G Perreault, Elisabet Perez-Coronel, Sara L Jackrel, Jeff S Bowman, Jonathan B Shurin | Molecular Ecology | 2025-05-20 | Abstract | |
| Fecal carriage of multidrug-resistant organisms increases the risk of hepatic encephalopathy in patients with cirrhosis: insights from gut microbiota and metabolite features. | Pei-Shan Wu, Pei-Chang Lee, Tien-En Chang, Yun-Cheng Hsieh, Chi-Wei Huang, Chao-Hsiung Lin, Yi-Long Huang, Yi-Tsung Lin, Teh-Ia Huo, Bernd Schnabl, Kuei-Chuan Lee, Ming-Chih Hou | Gut Pathogens | 2025-05-16 | Abstract | |
| Phage Therapy for Urinary Tract Infections: Progress and Challenges Ahead. | Chase J Morgan, Haley Atkins, Alan J Wolfe, Linda Brubaker, Saima Aslam, Catherine Putonti, Michael B Doud, Lindsey A Burnett | International Urogynecology Journal | 2025-05-13 | Abstract | |
| Genome-wide analyses identify 30 loci associated with obsessive-compulsive disorder. | Nora I Strom, Zachary F Gerring, Marco Galimberti, Dongmei Yu, Matthew W Halvorsen, Abdel Abdellaoui, Cristina Rodriguez-Fontenla, Julia M Sealock, Tim Bigdeli, Jonathan R Coleman, Behrang Mahjani, Jackson G Thorp, Katharina Bey, Christie L Burton, Jurjen J Luykx, Gwyneth Zai, Silvia Alemany, Christine Andre, Kathleen D Askland, Julia Bäckman, Nerisa Banaj, Cristina Barlassina, Judith Becker Nissen, O Joseph Bienvenu, Donald Black, Michael H Bloch, Sigrid Børte, Rosa Bosch, Michael Breen, Brian P Brennan, Helena Brentani, Joseph D Buxbaum, Jonas Bybjerg-Grauholm, Enda M Byrne, Judit Cabana-Dominguez, Beatriz Camarena, Adrian Camarena, Carolina Cappi, Angel Carracedo, Miguel Casas, Maria Cristina Cavallini, Valentina Ciullo, Edwin H Cook, Jesse Crosby, Bernadette A Cullen, Elles J De Schipper, Richard Delorme, Srdjan Djurovic, Jason A Elias, Xavier Estivill, Martha J Falkenstein, Bengt T Fundin, Lauryn Garner, Christina Gironda, Fernando S Goes, Marco A Grados, Jakob Grove, Wei Guo, Jan Haavik, Kristen Hagen, Kelly Harrington, Alexandra Havdahl, Kira D Höffler, Ana G Hounie, Donald Hucks, Christina Hultman, Magdalena Janecka, Eric Jenike, Elinor K Karlsson, Kara Kelley, Julia Klawohn, Janice E Krasnow, Kristi Krebs, Christoph Lange, Nuria Lanzagorta, Daniel Levey, Kerstin Lindblad-Toh, Fabio Macciardi, Brion Maher, Brittany Mathes, Evonne McArthur, Nathaniel McGregor, Nicole C McLaughlin, Sandra Meier, Euripedes C Miguel, Maureen Mulhern, Paul S Nestadt, Erika L Nurmi, Kevin S O'Connell, Lisa Osiecki, Olga Therese Ousdal, Teemu Palviainen, Nancy L Pedersen, Fabrizio Piras, Federica Piras, Sriramya Potluri, Raquel Rabionet, Alfredo Ramirez, Scott Rauch, Abraham Reichenberg, Mark A Riddle, Stephan Ripke, Maria C Rosário, Aline S Sampaio, Miriam A Schiele, Anne Heidi Skogholt, Laura G Sloofman, Jan Smit, María Soler Artigas, Laurent F Thomas, Eric Tifft, Homero Vallada, Nathanial van Kirk, Jeremy Veenstra-VanderWeele, Nienke N Vulink, Christopher P Walker, Ying Wang, Jens R Wendland, Bendik S Winsvold, Yin Yao, Hang Zhou, , , Arpana Agrawal, Pino Alonso, Götz Berberich, Kathleen K Bucholz, Cynthia M Bulik, Danielle Cath, Damiaan Denys, Valsamma Eapen, Howard Edenberg, Peter Falkai, Thomas V Fernandez, Abby J Fyer, J M Gaziano, Dan A Geller, Hans J Grabe, Benjamin D Greenberg, Gregory L Hanna, Ian B Hickie, David M Hougaard, Norbert Kathmann, James Kennedy, Dongbing Lai, Mikael Landén, Stéphanie Le Hellard, Marion Leboyer, Christine Lochner, James T McCracken, Sarah E Medland, Preben B Mortensen, Benjamin M Neale, Humberto Nicolini, Merete Nordentoft, Michele Pato, Carlos Pato, David L Pauls, John Piacentini, Christopher Pittenger, Danielle Posthuma, Josep Antoni Ramos-Quiroga, Steven A Rasmussen, Margaret A Richter, David R Rosenberg, Stephan Ruhrmann, Jack F Samuels, Sven Sandin, Paul Sandor, Gianfranco Spalletta, Dan J Stein, S Evelyn Stewart, Eric A Storch, Barbara E Stranger, Maurizio Turiel, Thomas Werge, Ole A Andreassen, Anders D Børglum, Susanne Walitza, Kristian Hveem, Bjarne K Hansen, Christian Rück, Nicholas G Martin, Lili Milani, Ole Mors, Ted Reichborn-Kjennerud, Marta Ribasés, Gerd Kvale, David Mataix-Cols, Katharina Domschke, Edna Grünblatt, Michael Wagner, John-Anker Zwart, Gerome Breen, Gerald Nestadt, Jaakko Kaprio, Paul D Arnold, Dorothy E Grice, James A Knowles, Helga Ask, Karin J Verweij, Lea K Davis, Dirk J Smit, James J Crowley, Jeremiah M Scharf, Murray B Stein, Joel Gelernter, Carol A Mathews, Eske M Derks, Manuel Mattheisen | Nature Genetics | 2025-05-13 | Abstract | |
| Genomic map of the functionally extinct northern white rhinoceros (). | Gaojianyong Wang, Marisa L Korody, Björn Brändl, Camilo Jose Hernandez-Toro, Christian Rohrandt, Karl Hong, Andy Wing Chun Pang, Joyce Lee, Giovanna Migliorelli, Mario Stanke, Sarah M Ford, Iris Pollmann, Marlys L Houck, Harris A Lewin, Teri L Lear, Oliver A Ryder, Alexander Meissner, Jeanne F Loring, Franz-Josef Müller | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2025-05-13 | Abstract | |
| Phylogeographic and genetic network assessment of COVID-19 mitigation protocols on SARS-CoV-2 transmission in university campus residences. | Joel O Wertheim, Tetyana I Vasylyeva, Robert J Wood, Kalen Cantrell, Soraya Piña Contreras, Aryeh Feldheim, Ravi Goyal, Jennifer L Havens, Rob Knight, Louise C Laurent, Niema Moshiri, Robert Neuhard, Shashank Sathe, Alysson Satterlund, Angela Scioscia, Angela Y Song, , Robert T Schooley, Cheryl M Anderson, Natasha K Martin | EBioMedicine | 2025-05-09 | Abstract | |
| Human milk oligosaccharide metabolism and antibiotic resistance in early gut colonizers: insights from bifidobacteria and lactobacilli in the maternal-infant microbiome. | Anna Samarra, Simone Renwick, Aleksandr A Arzamasov, Dmitry A Rodionov, Kennedy Spann, Raul Cabrera-Rubio, Antia Acuna-Gonzalez, Cecilia Martínez-Costa, Lindsay Hall, Nicola Segata, Andrei L Osterman, Lars Bode, MCarmen Collado | Gut Microbes | 2025-05-09 | Abstract | |
| Predictors of cognitive performance in Zambian adults with clade C HIV-1: The roles of antiretroviral therapy (ART)-induced CD4+ T-cell increase and pulmonary tuberculosis. | Knut A Hestad, J Anitha Menon, Mary Shilalukey Ngoma, Lumbuka Kaunda, Norma Kabuba, Ravi Paul, Scott Letendre, Donald R Franklin, Robert K Heaton | Neuropsychology | 2025-05-08 | Abstract | |
| Nasal vaccines for respiratory infections. | Hiroshi Kiyono, Peter B Ernst | Nature | 2025-05-07 | Abstract | |
| Wastewater-integrated pathogen surveillance dashboards enable real-time, transparent, and interpretable public health risk assessment and dissemination. | Nosihle S Msomi, Joshua I Levy, Nathaniel L Matteson, Nkosenhle Ndlovu, Phindile Ntuli, Adam Baer, Dylan Pilz, Victor Mabasa, Sipho Gwala, Natasha Singh, Kathleen Subramoney, Emmanuel Phalane, Mokgaetji Macheke, Mantshali Motloung, Thabo Mangena, Lethabo Monametsi, Lebohang Rabotapi, Sibonginkosi Maposa, Amanda Birmingham, Mark Zeller, Smruthi Karthikeyan, Peter De Hoff, Simon Harris, Rob Knight, Louise C Laurent, Kristian G Andersen, Kerrigan McCarthy, Mukhlid Yousif | PLOS Global Public Health | 2025-05-05 | Abstract | |
| Two years of outdoor cultivation in alternate climates produces little divergence in the productivity of Nannochloropsis. | Ahlem Jebali, Harmanpreet Kaur, Heather Martinez, Stephanie Getto, Cheryl Gleasner, Isidora Echenique-Subiabre, Julia Gerber, F F Omar Holguin, Jakob Nalley, Charles J O'Kelly, Jonathan B Shurin, Shawn R Starkenburg, Alina A Corcoran | The Science Of The Total Environment | 2025-05-05 | Abstract | |
| All-atom virus simulations to tackle airborne disease. | Abigail C Dommer, Nicholas A Wauer, Siewert J Marrink, Rommie E Amaro | Current Opinion In Structural Biology | 2025-05-03 | Abstract | |
| A responsive living material prepared by diffusion reveals extracellular enzyme activity of cyanobacteria. | Lisa Tang, Nathan T Soulier, Rebecca Wheeler, Jonathan K Pokorski, James W Golden, Susan S Golden, Jinhye Bae | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2025-05-01 | Abstract | |
| Gut microbiota-targeted therapies in pediatric chronic kidney disease: gaps and opportunities. | Arpana Iyengar, Balamurugan Ramadass, Shruthi Venkatesh, Robert H Mak | Pediatric Nephrology (Berlin, Germany) | 2025-05-01 | Abstract | |
| Oral Microbiome Profile of the US Population. | Anil K Chaturvedi, Emily Vogtmann, Jianxin Shi, Yukiko Yano, Martin J Blaser, Nicholas A Bokulich, J Gregory Caporaso, Maura L Gillison, Barry I Graubard, Xing Hua, Autumn G Hullings, Lisa Kahle, Rob Knight, Shilan Li, Jody McLean, Vaishnavi Purandare, Yunhu Wan, Neal D Freedman, Christian C Abnet | JAMA Network Open | 2025-05-01 | Abstract | |
| Interpreting roles of mutations associated with the emergence of USA300 strains using transcriptional regulatory network reconstruction. | Saugat Poudel, Jason Hyun, Ying Hefner, Jon Monk, Victor Nizet, Bernhard O Palsson | ELife | 2025-04-30 | Abstract | |
| gen. nov., sp. nov., a novel moderately halophilic, thermotolerant, bacterium isolated from a brine lake. | Luke A Fisher, Saloni R Dangre, Arthur Odenheimer, Nirav Patel, Peter T Doran, Jeff S Bowman, Britney E Schmidt, Douglas H Bartlett | International Journal Of Systematic And Evolutionary Microbiology | 2025-04-30 | Abstract | |
| A live bacteria enzyme assay for identification of human disease mutations and drug screening. | Donghui Choe, Bernhard O Palsson | Nature Biomedical Engineering | 2025-04-30 | Abstract | |
| Independent and combined adverse effects of neurocognitive impairment and depression on everyday functioning and quality of life in people with HIV. | Crystal X Wang, Victoria O Chentsova, Maximo R Prescott, Anya Umlauf, David J Moore, Ronald J Ellis, Mariana Cherner, Murray B Stein, Scott L Letendre, Robert K Heaton, Jennifer E Iudicello | Journal Of The International Neuropsychological Society : JINS | 2025-04-29 | Abstract | |
| The role of artificial intelligence in microbial sciences to support climate resilience. | Jack A Gilbert, Karsten Zengler | Nature Reviews. Microbiology | 2025-04-25 | Abstract | |
| Mind over microbiota: neurons call the shots in the gut. | Wuling Zhong, Karen Wang, Amir Zarrinpar | Nature Metabolism | 2025-04-22 | Abstract | |
| Pharmacokinetics and Safety of Ceftazidime-Avibactam in Neonates and Young Infants: a Phase 2a, Multicenter Prospective Trial. | John Bradley, Emmanuel Roilides, Margaret Tawadrous, Jean Li Yan, Elena Soto, Gregory G Stone, Shweta Kamat, Paurus Irani, Richard England | Journal Of The Pediatric Infectious Diseases Society | 2025-04-19 | Abstract | |
| The Urinary, Vaginal, and Perineal Microbiome: Commonalities and Differences. | Anisa Nasse, Melline Fontes Noronha, Linda Brubaker, Alan J Wolfe | International Urogynecology Journal | 2025-04-17 | Abstract | |
| Social and environmental predictors of gut microbiome age in wild baboons. | Mauna R Dasari, Kimberly E Roche, David Jansen, Jordan Anderson, Susan C Alberts, Jenny Tung, Jack A Gilbert, Ran Blekhman, Sayan Mukherjee, Elizabeth A Archie | ELife | 2025-04-17 | Abstract | |
| Soil depth determines the microbial communities in fields within a uniform regional environment. | Emily R Murray, Jeremiah J Minich, Jocelyn Saxton, Marie de Gracia, Nathaniel Eck, Nicholas Allsing, Justine Kitony, Kavi Patel-Jhawar, Eric E Allen, Todd P Michael, Nadia Shakoor | Microbiology Spectrum | 2025-04-16 | Abstract | |
| Insertion sequence-mediated phage resistance contributes to attenuated colonization of cytolytic variants in the gut. | Jumpei Fujiki, Tomohiro Nakamura, Henriette Kreimeyer, Cristina Llorente, Derrick E Fouts, Bernd Schnabl | Microbiology Spectrum | 2025-04-15 | Abstract | |
| Targeting the Gut Microbiota's Role in Host Energy Absorption With Precision Nutrition Interventions for the Prevention and Treatment of Obesity. | Karen D Corbin, Daria Igudesman, Steven R Smith, Karsten Zengler, Rosa Krajmalnik-Brown | Nutrition Reviews | 2025-04-15 | Abstract | |
| Rapid identification of key antibiotic resistance genes in using high-resolution genome-scale CRISPRi screening. | Donghui Choe, Eunju Lee, Kangsan Kim, Soonkyu Hwang, Ki Jun Jeong, Bernhard O Palsson, Byung-Kwan Cho, Suhyung Cho | IScience | 2025-04-15 | Abstract | |
| Sex differences in adenosine deaminase activity associate with disparities in SARS-CoV-2 innate immunity. | Priyanka Saminathan, Ian T Mathews, Ahmad Alimadadi, Kai Fung, Kiyokazu Kakugawa, Leo A B Joosten, Mihai G Netea, Mohit Jain, Susan Cheng, Catherine C Hedrick, Sonia Sharma | IScience | 2025-04-14 | Abstract | |
| Microbiologist in the Clinic: Antibiotic Dependent in her 30 s. | Linda Brubaker, Harry Horsley, Rajvinder Khasriya, Alan J Wolfe | International Urogynecology Journal | 2025-04-12 | Abstract | |
| Associations of alcohol with the human gut microbiome and prospective health outcomes in the FINRISK 2002 cohort. | Kari Koponen, Daniel McDonald, Pekka Jousilahti, Guillaume Meric, Michael Inouye, Leo Lahti, Teemu Niiranen, Satu Männistö, Aki Havulinna, Rob Knight, Veikko Salomaa | European Journal Of Nutrition | 2025-04-11 | Abstract | |
| Psychological stress increases skin infection through the action of TGFβ to suppress immune-acting fibroblasts. | Hung Chan, Fengwu Li, Tatsuya Dokoshi, Kellen J Cavagnero, Qing Li, Yang Chen, Carlos Aguilera, Teruaki Nakatsuji, Edward Liu, Aaryan Indra, Daping Yang, Ottaviani Valentina, Tomofumi Numata, Brittany Crown, Henry Li, Kevin J Williams, Isaac M Chiu, Steven J Bensinger, WanJun Chen, Richard L Gallo | Science Immunology | 2025-04-11 | Abstract | |
| Clinical translation of microbiome research. | Jack A Gilbert, Meghan B Azad, Fredrik Bäckhed, Martin J Blaser, Mariana Byndloss, Charles Y Chiu, Hiutung Chu, Lara R Dugas, Eran Elinav, Sean M Gibbons, Katharine E Gilbert, Matthew R Henn, Suzanne L Ishaq, Ruth E Ley, Susan V Lynch, Eran Segal, Tim D Spector, Philip Strandwitz, Jotham Suez, Carolina Tropini, Katrine Whiteson, Rob Knight | Nature Medicine | 2025-04-11 | Abstract | |
| Allosteric modulation by the fatty acid site in the glycosylated SARS-CoV-2 spike. | A Sofia F Oliveira, Fiona L Kearns, Mia A Rosenfeld, Lorenzo Casalino, Lorenzo Tulli, Imre Berger, Christiane Schaffitzel, Andrew D Davidson, Rommie E Amaro, Adrian J Mulholland | ELife | 2025-04-10 | Abstract | |
| Complete sequencing of ape genomes. | DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A Logsdon, Steven J Solar, Dmitry Antipov, Brandon D Pickett, Yana Safonova, Francesco Montinaro, Yanting Luo, Joanna Malukiewicz, Jessica M Storer, Jiadong Lin, Abigail N Sequeira, Riley J Mangan, Glenn Hickey, Graciela Monfort Anez, Parithi Balachandran, Anton Bankevich, Christine R Beck, Arjun Biddanda, Matthew Borchers, Gerard G Bouffard, Emry Brannan, Shelise Y Brooks, Lucia Carbone, Laura Carrel, Agnes P Chan, Juyun Crawford, Mark Diekhans, Eric Engelbrecht, Cedric Feschotte, Giulio Formenti, Gage H Garcia, Luciana de Gennaro, David Gilbert, Richard E Green, Andrea Guarracino, Ishaan Gupta, Diana Haddad, Junmin Han, Robert S Harris, Gabrielle A Hartley, William T Harvey, Michael Hiller, Kendra Hoekzema, Marlys L Houck, Hyeonsoo Jeong, Kaivan Kamali, Manolis Kellis, Bryce Kille, Chul Lee, Youngho Lee, William Lees, Alexandra P Lewis, Qiuhui Li, Mark Loftus, Yong Hwee Eddie Loh, Hailey Loucks, Jian Ma, Yafei Mao, Juan F I Martinez, Patrick Masterson, Rajiv C McCoy, Barbara McGrath, Sean McKinney, Britta S Meyer, Karen H Miga, Saswat K Mohanty, Katherine M Munson, Karol Pal, Matt Pennell, Pavel A Pevzner, David Porubsky, Tamara Potapova, Francisca R Ringeling, Joana L Rocha, Oliver A Ryder, Samuel Sacco, Swati Saha, Takayo Sasaki, Michael C Schatz, Nicholas J Schork, Cole Shanks, Linnéa Smeds, Dongmin R Son, Cynthia Steiner, Alexander P Sweeten, Michael G Tassia, Françoise Thibaud-Nissen, Edmundo Torres-González, Mihir Trivedi, Wenjie Wei, Julie Wertz, Muyu Yang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhang, Sarah A Zhao, Yixin Zhu, Erich D Jarvis, Jennifer L Gerton, Iker Rivas-González, Benedict Paten, Zachary A Szpiech, Christian D Huber, Tobias L Lenz, Miriam K Konkel, Soojin V Yi, Stefan Canzar, Corey T Watson, Peter H Sudmant, Erin Molloy, Erik Garrison, Craig B Lowe, Mario Ventura, Rachel J O'Neill, Sergey Koren, Kateryna D Makova, Adam M Phillippy, Evan E Eichler | Nature | 2025-04-09 | Abstract | |
| Conserved chromatin regulators control the transcriptional immune response to intracellular pathogens in Caenorhabditis elegans. | Eillen Tecle, Paaramitha Warushavithana, Samuel Li, Michael J Blanchard, Crystal B Chhan, Theresa Bui, Ryan S Underwood, Malina A Bakowski, Emily R Troemel, Vladimir Lažetić | PLoS Genetics | 2025-04-07 | Abstract | |
| Suspended detrital particles support a distinct microbial ecosystem in Palmer Canyon, Antarctica, a coastal biological hotspot. | Elizabeth Connors, Katherine L Gallagher, Avishek Dutta, Matthew Oliver, Jeff S Bowman | Polar Biology | 2025-04-07 | Abstract | |
| Unlocking the potential of the gut microbiome in liver regeneration: Benefits and mechanistic insights. | Wenchao Wei, Bernd Schnabl | Acta Pharmaceutica Sinica. B | 2025-04-05 | Abstract | |
| Extracellular respiration is a latent energy metabolism in Escherichia coli. | Biki Bapi Kundu, Jayanth Krishnan, Richard Szubin, Arjun Patel, Bernhard O Palsson, Daniel C Zielinski, Caroline M Ajo-Franklin | Cell | 2025-04-04 | Abstract | |
| Examining the potential prebiotic effect of almonds. | Maha Tahiri, Jack A Gilbert | Journal Of Applied Microbiology | 2025-03-28 | Abstract | |
| Anesthetic choice impacts mortality and bacterial clearance in a murine experimental pneumonia model. | Hunter Gage, Shawn M Hannah, Bryan Hancock, Ingrid Cornax, Jason Munguia, Joshua Olson, Elisabet Bjånes, Raymond Zurich, Alexandria Hoffman, Fatemeh Askarian, Khang Tong, Lin Liu, Victor Nizet, Angela Meier | BMC Infectious Diseases | 2025-03-27 | Abstract | |
| Expression of Fluorescence Reporters and Natural Products in Native Gut . | Dake Liu, Phuong M Ton, David Zong, Amir Zarrinpar, Yousong Ding | ACS Synthetic Biology | 2025-03-26 | Abstract | |
| Implications of Cognitive Impairment on Antihypertensive Medication Use in HIV. | Azin Tavasoli, Bin Tang, Mohammadsobhan S Andalibi, Donald R Franklin, Scott L Letendre, Robert K Heaton, Ronald J Ellis | Viruses | 2025-03-26 | Abstract | |
| Inhibition of human-HPV hybrid ecDNA enhancers reduces oncogene expression and tumor growth in oropharyngeal cancer. | Takuya Nakagawa, Jens Luebeck, Kaiyuan Zhu, Joshua T Lange, Roman Sasik, Chad Phillips, Sayed Sadat, Sara Javadzadeh, Qian Yang, Abdula Monther, Santiago Fassardi, Allen Wang, Kersi Pestonjamasp, Brin Rosenthal, Kathleen M Fisch, Paul Mischel, Vineet Bafna, Joseph A Califano | Nature Communications | 2025-03-26 | Abstract | |
| The P-loop NTPase RUVBL2 is a conserved clock component across eukaryotes. | Meimei Liao, Yanqin Liu, Zhancong Xu, Mingxu Fang, Ziqing Yu, Yufan Cui, Zhengda Sun, Ran Huo, Jieyu Yang, Fusheng Huang, Mingming Liu, Qin Zhou, Xiaocui Song, Hui Han, She Chen, Xiaodong Xu, Ximing Qin, Qun He, Dapeng Ju, Tao Wang, Nirav Thakkar, Paul E Hardin, Susan S Golden, Eric Erquan Zhang | Nature | 2025-03-26 | Abstract | |
| Diverse priming outcomes under conditions of very rare precursor B cells. | Patrick J Madden, Ester Marina-Zárate, Kristen A Rodrigues, Jon M Steichen, Monolina Shil, Kaiyuan Ni, Katarzyna Kaczmarek Michaels, Laura Maiorino, Amit A Upadhyay, Swati Saha, Arpan Pradhan, Oleksandr Kalyuzhiny, Alessia Liguori, Paul G Lopez, Ivy Phung, Claudia Flynn, Amelia Zhou, Mariane B Melo, Ashley Lemnios, Nicole Phelps, Erik Georgeson, Nushin Alavi, Michael Kubitz, Danny Lu, Saman Eskandarzadeh, Amanda Metz, Oscar L Rodriguez, Kaitlyn Shields, Steven Schultze, Melissa L Smith, Brandon S Healy, Deuk Lim, Vanessa R Lewis, Elana Ben-Akiva, William Pinney, Justin Gregory, Shuhao Xiao, Diane G Carnathan, Sudhir Pai Kasturi, Corey T Watson, Steven E Bosinger, Guido Silvestri, William R Schief, Darrell J Irvine, Shane Crotty | Immunity | 2025-03-25 | Abstract | |
| Sequential membrane- and protein-bound organelles compartmentalize genomes during phage infection. | Emily G Armbruster, Phoolwanti Rani, Jina Lee, Niklas Klusch, Joshua Hutchings, Lizbeth Y Hoffman, Hannah Buschkaemper, Eray Enustun, Benjamin A Adler, Koe Inlow, Arica R VanderWal, Madelynn Y Hoffman, Daksh Daksh, Ann Aindow, Amar Deep, Zaida K Rodriguez, Chase J Morgan, Majid Ghassemian, Thomas G Laughlin, Emeric Charles, Brady F Cress, David F Savage, Jennifer A Doudna, Kit Pogliano, Kevin D Corbett, Elizabeth Villa, Joe Pogliano | Cell Host & Microbe | 2025-03-25 | Abstract | |
| Implementation of a seamless phase 2/3 study design in the setting of an emergent infectious disease pandemic: Lessons learned from the ACTIV-2 platform COVID-19 treatment trial. | Mark J Giganti, Kara W Chew, Carlee Moser, Joseph J Eron, Mauricio Pinilla, Jonathan Z Li, Justin Ritz, Arzhang Cyrus Javan, David Alain Wohl, Eric S Daar, Judith S Currier, Davey M Smith, Michael D Hughes, | Contemporary Clinical Trials | 2025-03-25 | Abstract | |
| Protocol for the development, assembly, and testing of a synthetic skin microbial community. | Deepan Thiruppathy, Asama Lekbua, Joanna Coker, Yuhan Weng, Fatemeh Askarian, Armin Kousha, Clarisse Marotz, Amber Hauw, Megan Tjuanta, Victor Nizet, Karsten Zengler | STAR Protocols | 2025-03-24 | Abstract | |
| A Reflection on the Use of Molecular Simulation to Respond to SARS-CoV-2 Pandemic Threats. | Lorenzo Casalino, Carlos A Ramos-Guzmán, Rommie E Amaro, Carlos Simmerling, Alessio Lodola, Adrian J Mulholland, Katarzyna Świderek, Vicent Moliner | The Journal Of Physical Chemistry Letters | 2025-03-21 | Abstract | |
| Virocell Necromass Provides Limited Plant Nitrogen and Elicits Rhizosphere Metabolites That Affect Phage Dynamics. | Vlastimil Novak, Michelle C M van Winden, Thomas V Harwood, Rachel Neurath, Suzanne M Kosina, Katherine B Louie, Matthew B Sullivan, Simon Roux, Karsten Zengler, Vivek K Mutalik, Trent R Northen | Plant, Cell & Environment | 2025-03-19 | Abstract | |
| Is Associated with Disease Severity in MASLD but Its Supplementation Does Not Improve Diet-Induced Steatohepatitis in Mice. | Eliane Münte, Greta Viebahn, Amit Khurana, Jumpei Fujiki, Tomohiro Nakamura, Sonja Lang, Münevver Demir, Bernd Schnabl, Phillipp Hartmann | Microorganisms | 2025-03-18 | Abstract | |
| Light cues drive community-wide transcriptional shifts in the hypersaline South Bay Salt Works. | Margaret M Weng, Benjamin Klempay, Jeff S Bowman, Luke Fisher, Cyprien Camplong, Peter T Doran, Susan Rundell, Jennifer B Glass, Avishek Dutta, Alexandra Pontefract, Douglas H Bartlett, Britney Schmidt, Sarah Stewart Johnson | Communications Biology | 2025-03-17 | Abstract | |
| Structure Elucidation, Biosynthetic Gene Cluster Distribution, and Biological Activities of Ketomemicin Analogs in . | Gabriel Castro-Falcón, Dulce G Guillén-Matus, Elany Barbosa Da Silva, Wentao Guo, Alicia Ross, Mateus Sá Magalhães Serafim, Thaís Helena Maciel Fernandes, Dean J Tantillo, Anthony J O'Donoghue, Paul R Jensen | Marine Drugs | 2025-03-14 | Abstract | |
| Influence of Alcohol on the Intestinal Immune System. | Henriette Kreimeyer, Cristina Llorente, Bernd Schnabl | Alcohol Research : Current Reviews | 2025-03-14 | Abstract | |
| Observed Mask Wearing and Presence of SARS-CoV-2 in School Wastewater, San Diego County, CA, 2022. | Rebecca Fielding-Miller, Tommi Gaines, Ashkan Hassani, Tina Le, Vinton Omaleki, Marlene Flores, Araz Majnoonian, F Carrissa Wijaya, Rob Knight, Smruthi Karthikeyan, Richard S Garfein | American Journal Of Public Health | 2025-03-12 | Abstract | |
| Structure of a putative terminal amidation domain in natural product biosynthesis. | Michael R Rankin, Dheeraj Khare, Lena Gerwick, David H Sherman, William H Gerwick, Janet L Smith | Structure (London, England : 1993) | 2025-03-11 | Abstract | |
| Machine learning uncovers the transcriptional regulatory network for the production host Streptomyces albidoflavus. | Mathias Jönsson, Renata Sigrist, Tetiana Gren, Mykhaylo Semenov Petrov, Nils Emil Junge Marcussen, Anna Svetlova, Pep Charusanti, Peter Gockel, Bernhard O Palsson, Lei Yang, Emre Özdemir | Cell Reports | 2025-03-07 | Abstract | |
| Gram-positive probiotics improves acetaminophen-induced hepatotoxicity by inhibiting leucine and Hippo-YAP pathway. | Wenkang Gao, Gang Wang, Hang Yuan, Yue Chen, Jiake Che, Zilu Cheng, Liuying Chen, Li Zhang, Yuanqing Zhu, Xin Liu, Ao Liu, Quancheng Yang, Peng Cao, Wei Qian, Weiyan Huang, Bernd Schnabl, Ling Yang, Huikuan Chu | Cell & Bioscience | 2025-03-07 | Abstract | |
| Effects of temperature and nutrient load on the interaction of Vibrio parahaemolyticus and plastic pollution in the marine environment. | Kara J Wiggin, Ryan K Chung, Jack A Gilbert, Sarah M Allard | Marine Pollution Bulletin | 2025-03-05 | Abstract | |
| Absolute quantification of the living skin microbiome overcomes relic-DNA bias and reveals specific patterns across volunteers. | Deepan Thiruppathy, Oriane Moyne, Clarisse Marotz, Michael Williams, Perris Navarro, Livia Zaramela, Karsten Zengler | Microbiome | 2025-03-04 | Abstract | |
| Gut microbiota and derived metabolites mediate obstructive sleep apnea induced atherosclerosis. | Jin Xue, Celeste Allaband, Simone Zuffa, Orit Poulsen, Jason Meadows, Dan Zhou, Pieter C Dorrestein, Rob Knight, Gabriel G Haddad | Gut Microbes | 2025-03-02 | Abstract | |
| Discovery of metabolites prevails amid in-source fragmentation. | Yasin El Abiead, Adriano Rutz, Simone Zuffa, Bashar Amer, Shipei Xing, Corinna Brungs, Robin Schmid, Mario S P Correia, Andres Mauricio Caraballo-Rodriguez, Amir Zarrinpar, Helena Mannochio-Russo, Michael Witting, Ipsita Mohanty, Tomáš Pluskal, Wout Bittremieux, Rob Knight, Andrew D Patterson, Justin J J van der Hooft, Sebastian Böcker, Warwick B Dunn, Roger G Linington, David S Wishart, Jean-Luc Wolfender, Oliver Fiehn, Nicola Zamboni, Pieter C Dorrestein | Nature Metabolism | 2025-02-28 | Abstract | |
| Author Correction: Spatial chemistry of citrus reveals molecules bactericidal to Candidatus Liberibacter asiaticus. | Alexander A Aksenov, Alex Blacutt, Nichole Ginnan, Philippe E Rolshausen, Alexey V Melnik, Lotfi Ali, Emily C Gentry, Manikandan Ramasamy, Cristal Zuniga, Karsten Zengler, Kranthi K Mandadi, Pieter C Dorrestein, M Caroline Roper, Greg McCollum | Scientific Reports | 2025-02-28 | Abstract | |
| Human Untargeted Metabolomics in High-Throughput Gut Microbiome Research: Ethanol vs Methanol. | Simone Zuffa, Vincent Charron-Lamoureux, Caitriona Brennan, Madison Ambre, Rob Knight, Pieter C Dorrestein | Analytical Chemistry | 2025-02-27 | Abstract | |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Applied And Environmental Microbiology | 2025-02-27 | Abstract | |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Microbiology Spectrum | 2025-02-27 | Abstract | |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Journal Of Virology | 2025-02-27 | Abstract | |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Antimicrobial Agents And Chemotherapy | 2025-02-27 | Abstract | |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Journal Of Microbiology & Biology Education | 2025-02-27 | Abstract | |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Microbiology Resource Announcements | 2025-02-27 | Abstract | |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Microbiology And Molecular Biology Reviews : MMBR | 2025-02-27 | Abstract | |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Infection And Immunity | 2025-02-27 | Abstract | |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Clinical Microbiology Reviews | 2025-02-27 | Abstract | |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | MSystems | 2025-02-27 | Abstract | |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Journal Of Clinical Microbiology | 2025-02-27 | Abstract | |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | MSphere | 2025-02-27 | Abstract | |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | MBio | 2025-02-27 | Abstract | |
| A call for the United States to continue investing in science. | Ira Blader, Felicia Goodrum, Michael J Imperiale, Arturo Casadevall, Cesar Arias, Andreas Baumler, Carey-Ann Burnham, Christina Cuomo, Corrella Detweiler, Graeme Forrest, Jack Gilbert, Susan Lovett, Stanley Maloy, Alexander McAdam, Irene Newton, Gemma Reguera, George A O'Toole, Patrick D Schloss, Ashley Shade, Marvin Whiteley | Journal Of Bacteriology | 2025-02-27 | Abstract | |
| Dietary intake of the red meat-derived glycan Neu5Gc fuels colorectal cancer through up-regulation of Wnt signaling pathway. | Ana Luiza Lopes, Amanda Carlos Paulino, Mariana A S Thaumaturgo, Wallace Martins Araújo, Philippe Caloba, Kunio Kawanishi, Karl Willert, Rodrigo P De Oliveira, João C Machado, Felipe Lemos, Nissi Varki, Jose Andres Morgado-Diaz, Heinz Läubli, Adriane Regina Todeschini, Ajit Varki, Frederico Alisson-Silva | Cancer Letters | 2025-02-27 | Abstract | |
| SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx. | Cameron Martino, Benjamin P Kellman, Daniel R Sandoval, Thomas Mandel Clausen, Robert Cooper, Alhosna Benjdia, Feryel Soualmia, Alex E Clark, Aaron F Garretson, Clarisse A Marotz, Se Jin Song, Stephen Wandro, Livia S Zaramela, Rodolfo A Salido, Qiyun Zhu, Erick Armingol, Yoshiki Vázquez-Baeza, Daniel McDonald, James T Sorrentino, Bryn Taylor, Pedro Belda-Ferre, Promi Das, Farhana Ali, Chenguang Liang, Yujie Zhang, Luca Schifanella, Alice Covizzi, Alessia Lai, Agostino Riva, Christopher Basting, Courtney Ann Broedlow, Aki S Havulinna, Pekka Jousilahti, Mehrbod Estaki, Tomasz Kosciolek, Rayus Kuplicki, Teresa A Victor, Martin P Paulus, Kristen E Savage, Jennifer L Benbow, Emma S Spielfogel, Cheryl A M Anderson, Maria Elena Martinez, James V Lacey, Shi Huang, Niina Haiminen, Laxmi Parida, Ho-Cheol Kim, Jack A Gilbert, Daniel A Sweeney, Sarah M Allard, Austin D Swafford, Susan Cheng, Michael Inoyue, Teemu Niiranen, Mohit Jain, Veikko Salomaa, Karsten Zengler, Nichole R Klatt, Jeff Hasty, Olivier Berteau, Aaron F Carlin, Jeffrey D Esko, Nathan E Lewis, Rob Knight | MBio | 2025-02-25 | Abstract | |
| To Impute or Not To Impute in Untargeted Metabolomics─That is the Compositional Question. | Dennis D Krutkin, Sydney Thomas, Simone Zuffa, Prajit Rajkumar, Rob Knight, Pieter C Dorrestein, Scott T Kelley | Journal Of The American Society For Mass Spectrometry | 2025-02-25 | Abstract | |
| Objectively measured moderate-to-vigorous physical activity does not attenuate prospective weight gain among african-origin adults spanning the epidemiological transition. | Jessica C Davies, Candice Choo-Kang, Larske Soepnel, Hayli Geffen, Chad Africa, Asanda Mtintsilana, Pascal Bovet, Bharathi Viswanathan, Kweku Bedu-Addo, Jacob Plange-Rhule, Prince Oti Boateng, Kingsley Apusiga, Oscar Akunor Dei, Terrence E Forrester, Marie Williams, Estelle V Lambert, Dale E Rae, Nandipha Sinyanya, Brian T Layden, Jack A Gilbert, Gertrude Ecklu-Mensah, Cara Joyce, Amy Luke, Lara R Dugas | Scientific Reports | 2025-02-25 | Abstract | |
| Urinary Metabolomic Profile is Minimally Impacted by Common Storage Conditions and Additives. | Kelly C Weldon, Morgan Panitchpakdi, Andrés Mauricio Caraballo-Rodríguez, Alan J Wolfe, Pieter C Dorrestein, Linda Brubaker, Lindsey A Burnett | International Urogynecology Journal | 2025-02-24 | Abstract | |
| ChIP provides 10-fold microbial DNA enrichment from tissue while minimizing bias. | Shrikant Bhute, Jon G Sanders, Se Jin Song, Sydney Lavoie, Austin Swafford, Caitlin Guccione, Lucas Patel, Antonio Gonzalez, Michelle G Rooks, Rob Knight, Andrew Bartko | Molecular Biology Reports | 2025-02-21 | Abstract | |
| Pre-pandemic leukocyte count is associated with severity of post-acute sequelae of SARS-CoV-2 infection among older women in the Women's Health Initiative. | Ted K S Ng, Hind A Beydoun, Diane Von Ah, Aladdin H Shadyab, Shu Cheng Wong, Matthew Freiberg, Farha Ikramuddin, Patricia K Nguyen, Philippe Jean-Luc Gradidge, Lihong Qi, Zhao Chen, Keenan A Pituch, Suzi Hong, JoAnn E Manson | Menopause (New York, N.Y.) | 2025-02-21 | Abstract | |
| The International Space Station has a unique and extreme microbial and chemical environment driven by use patterns. | Rodolfo A Salido, Haoqi Nina Zhao, Daniel McDonald, Helena Mannochio-Russo, Simone Zuffa, Renee E Oles, Allegra T Aron, Yasin El Abiead, Sawyer Farmer, Antonio González, Cameron Martino, Ipsita Mohanty, Ceth W Parker, Lucas Patel, Paulo Wender Portal Gomes, Robin Schmid, Tara Schwartz, Jennifer Zhu, Michael R Barratt, Kathleen H Rubins, Hiutung Chu, Fathi Karouia, Kasthuri Venkateswaran, Pieter C Dorrestein, Rob Knight | Cell | 2025-02-21 | Abstract | |
| Embracing the systems complexity of microbial ecology and evolution: call for papers. | Leonora Bittleston, Jack Gilbert, Jonathan Klassen, Rachel Mackelprang, Mark J Mandel, Ryan J Newton, Atmika Paudel, Alejandra Rodriguez-Verdugo, Ashley Shade, Roland C Wilhelm, Ying Zhang | MSystems | 2025-02-20 | Abstract | |
| Traits determine dispersal and colonization abilities of microbes. | Isidora Echenique-Subiabre, Sara L Jackrel, Jay McCarren, Chase C James, Elisabet Perez-Coronel, Cindy Tran, Madeline Perreault, Ugbad Farah, P Signe White, Henry K Baker, Christopher B Wall, Lindsay Sager, Scott Becker, Andrew D Barton, Jonathan B Shurin | Applied And Environmental Microbiology | 2025-02-20 | Abstract | |
| Embracing the systems complexity of microbial ecology and evolution: call for papers. | Leonora Bittleston, Jack Gilbert, Jonathan Klassen, Rachel Mackelprang, Mark J Mandel, Ryan J Newton, Atmika Paudel, Alejandra Rodriguez-Verdugo, Ashley Shade, Roland C Wilhelm, Ying Zhang | MSystems | 2025-02-20 | Abstract | |
| Acute-on-chronic liver failure (ACLF): the 'Kyoto Consensus'-steps from Asia. | Ashok Choudhury, Anand V Kulkarni, Vinod Arora, A S Soin, Abdul Kadir Dokmeci, Abhijeet Chowdhury, Abraham Koshy, Ajay Duseja, Ajay Kumar, Ajay Kumar Mishra, Ajay Kumar Patwa, Ajit Sood, Akash Roy, Akash Shukla, Albert Chan, Aleksander Krag, Amar Mukund, Ameet Mandot, Amit Goel, Amna Subhan Butt, Amrish Sahney, Ananta Shrestha, Andrés Cárdenas, Angelo Di Giorgio, Anil Arora, Anil Chandra Anand, Anil Dhawan, Ankur Jindal, Anoop Saraya, Anshu Srivastava, Anupam Kumar, Apichat Kaewdech, Apurva Pande, Archana Rastogi, Arun Valsan, Ashish Goel, Ashish Kumar, Ashwani K Singal, Atsushi Tanaka, Audrey Coilly, Ayaskanta Singh, Babu Lal Meena, Barath Jagadisan, Barjesh Chander Sharma, Bikrant Bihari Lal, C E Eapen, Cesar Yaghi, Chandan Kumar Kedarisetty, Chang Wook Kim, Charles Panackel, Chen Yu, Chetan R Kalal, Chhagan Bihari, Chien Hao Huang, Chitranshu Vasishtha, Christian Jansen, Christian Strassburg, Chun Yen Lin, Constantine J Karvellas, Cosmas Rinaldi Adithya Lesmana, Cyriac Abby Philips, Debbie Shawcross, Dharmesh Kapoor, Dhiraj Agrawal, Diana Alcantara Payawal, Dibya Lochan Praharaj, Dinesh Jothimani, Do Seon Song, Dong Joon Kim, Dong-Sik Kim, Duan Zhongping, Fazal Karim, Francois Durand, Gamal E Shiha, Gennaro D'Amico, George K Lau, Girish Kumar Pati, Graciela Elia Castro Narro, Guan-Huei Lee, Gupse Adali, Guru Prasad Dhakal, Gyongyi Szabo, H C Lin, Hai Li, Hari Kumar Nair, Harshad Devarbhavi, Harshvardhan Tevethia, Hasmik Ghazinian, Hemamala Ilango, Hong Ling Yu, Irsan Hasan, J Fernandez, Jacob George, Jaideep Behari, James Fung, Jasmohan Bajaj, Jaya Benjamin, Jennifer C Lai, Jidong Jia, Jin Hua Hu, Jin Jun Chen, Jin Lin Hou, Jin Mo Yang, Johannes Chang, Jonel Trebicka, Jörg C Kalf, Jose D Sollano, Joy Varghese, Juan Pablo Arab, Jun Li, K Rajender Reddy, Kaiser Raja, Kalpana Panda, Kamal Kajal, Karan Kumar, Kaushal Madan, Kemal Fariz Kalista, Kessarin Thanapirom, Khin Maung Win, Ki Tae Suk, Krishnadas Devadas, Laurentius A Lesmana, Lubna Kamani, Madhumita Premkumar, Madunil A Niriella, Mamun Al Mahtab, Man Fung Yuen, Manal HEl Sayed, Manasa Alla, Manav Wadhawan, Manoj Kumar Sharma, Manoj Sahu, Manya Prasad, Mark Dhinesh Muthiah, Martin Schulz, Meenu Bajpai, Mettu Srinivas Reddy, Michael Praktiknjo, Ming Lung Yu, Mithra Prasad, Mithun Sharma, Mohamed Elbasiony, Mohammed Eslam, Mohd Golam Azam, Mohd Rela, Moreshwar S Desai, Mukul Vij, Nadim Mahmud, Narendra Singh Choudhary, Navin Kumar Marannan, Necati Ormeci, Neeraj Saraf, Nipun Verma, Nobuaki Nakayama, Norifumi Kawada, Oidov Baatarkhuu, Omesh Goyal, Osamu Yokosuka, P N Rao, Paolo Angeli, Pathik Parikh, Patrick S Kamath, Paul J Thuluvath, Philipp Lingohr, Piyush Ranjan, Prashant Bhangui, Pravin Rathi, Puja Sakhuja, Puneet Puri, Qin Ning, R K Dhiman, Rahul Kumar, Rajan Vijayaraghavan, Rajeev Khanna, Rakhi Maiwall, Ravi Mohanka, Richard Moreau, Rino Alvani Gani, Rohit Loomba, Rohit Mehtani, Ruveena Bhavani Rajaram, S S Hamid, Sachin Palnitkar, Sadhna Lal, Sagnik Biswas, Sakkarin Chirapongsathorn, Samagra Agarwal, Sanjeev Sachdeva, Sanjiv Saigal, Santhosh E Kumar, Sargsyan Violeta, Satender Pal Singh, Satoshi Mochida, Saurabh Mukewar, Seema Alam, Seng Gee Lim, Shahinul Alam, Shalimar, Shantan Venishetty, Shikha S Sundaram, Shiran Shetty, Shobna Bhatia, Shweta A Singh, Shyam Kottilil, Simone Strasser, S M Shasthry, Soe Thiha Maung, Soek Siam Tan, Sombat Treeprasertsuk, Sonal Asthana, Steffen Manekeller, Subhash Gupta, Subrat Kumar Acharya, Sudhamshu K C, Sudhir Maharshi, Sumeet Asrani, Sunil Dadhich, Sunil Taneja, Suprabhat Giri, Surender Singh, Tao Chen, Tarana Gupta, Tatsuo Kanda, Tawesak Tanwandee, Teerha Piratvishuth, Ulrich Spengler, V G Mohan Prasad, Vandana Midha, Venera Rakhmetova, Vicente Arroyo, Vikrant Sood, Vinay Kumar Br, Vincent Wai-Sun Wong, Viniyendra Pamecha, Virendra Singh, Vishwa Mohan Dayal, Vivek A Saraswat, WRay Kim, Wasim Jafri, Wenyi Gu, Wong Yu Jun, Xiaolong Qi, Yogesh K Chawla, Yoon Jun Kim, Yu Shi, Zaigham Abbas, Guresh Kumar, Shuichiro Shiina, Lai Wei, Masao Omata, Shiv Kumar Sarin, | Hepatology International | 2025-02-17 | Abstract | |
| Fluoxetine promotes IL-10-dependent metabolic defenses to protect from sepsis-induced lethality. | Robert M Gallant, Karina K Sanchez, Emeline Joulia, Jessica M Snyder, Christian M Metallo, Janelle S Ayres | Science Advances | 2025-02-14 | Abstract | |
| Comparison of Methods for Isolation and Characterization of Total and Astrocyte-Enriched Extracellular Vesicles From Human Serum and Plasma. | Leandra K Figueroa-Hall, Kaiping Burrows, Ahlam M Alarbi, Bethany N Hannafon, Cole Hladik, Chibing Tan, Rajagopal Ramesh, Jennifer L Stewart, Victoria B Risbrough, Martin P Paulus, T Kent Teague | Journal Of Extracellular Biology | 2025-02-14 | Abstract | |
| Identification of Substituted 4-Aminocinnolines as Broad-Spectrum Antiparasitic Agents. | Andrew Spaulding, Amrita Sharma, Miriam A Giardini, Benjamin Hoffman, Jean A Bernatchez, Laura-Isobel McCall, Claudia M Calvet, Jasmin Ackermann, Julia M Souza, Diane Thomas, Caroline C Millard, William G Devine, Baljinder Singh, Everton M Silva, Susan E Leed, Norma E Roncal, Erica C Penn, Jessey Erath, Gaurav Kumar, Yadira Sepulveda, Arnold Garcia, Ana Rodriguez, Nelly El-Sakkary, Richard J Sciotti, Robert F Campbell, Jeremiah D Momper, James H McKerrow, Conor R Caffrey, Jair L Siqueira-Neto, Michael P Pollastri, Kojo Mensa-Wilmot, Lori Ferrins | ACS Infectious Diseases | 2025-02-12 | Abstract | |
| Author Correction: Transcription Factor 4 loss-of-function is associated with deficits in progenitor proliferation and cortical neuron content. | Fabio Papes, Antonio P Camargo, Janaina S de Souza, Vinicius M A Carvalho, Ryan A Szeto, Erin LaMontagne, José R Teixeira, Simoni H Avansini, Sandra M Sánchez-Sánchez, Thiago S Nakahara, Carolina N Santo, Wei Wu, Hang Yao, Barbara M P Araújo, Paulo E N F Velho, Gabriel G Haddad, Alysson R Muotri | Nature Communications | 2025-02-12 | Abstract | |
| Single-Enzyme Conversion of Tryptophan to Skatole and Cyanide Expands the Mechanistic Competence of Diiron Oxidases. | Sanjoy Adak, Logan A Calderone, August Krueger, Maria-Eirini Pandelia, Bradley S Moore | Journal Of The American Chemical Society | 2025-02-12 | Abstract | |
| Clinical Application of Bacteriophage Therapy in Children. | Nanda Ramchandar, John S Bradley | Pediatrics | 2025-02-11 | Abstract | |
| Modulating the developing gut microbiota with 2'-fucosyllactose and pooled human milk oligosaccharides. | Simone Renwick, Annalee Furst, Mikael Knip, , Lars Bode, Jayne S Danska, Emma Allen-Vercoe | Microbiome | 2025-02-07 | Abstract | |
| Metabolic deficiencies underlie reduced plasmacytoid dendritic cell IFN-I production following viral infection. | Trever T Greene, Yeara Jo, Carolina Chiale, Monica Macal, Ziyan Fang, Fawziyah S Khatri, Alicia L Codrington, Katelynn R Kazane, Elizabeth Akbulut, Shobha Swaminathan, Yu Fujita, Patricia Fitzgerald-Bocarsly, Thekla Cordes, Christian Metallo, David A Scott, Elina I Zúñiga | Nature Communications | 2025-02-07 | Abstract | |
| Comprehensive proteolytic profiling of Aedes aegypti mosquito midgut extracts: Unraveling the blood meal protein digestion system. | Anthony J O'Donoghue, Chenxi Lui, Carter J Simington, Saira Montermoso, Elizabeth Moreno-Galvez, Mateus Sá M Serafim, Olive E Burata, Rachael M Lucero, James T Nguyen, Daniel Fong, Khanh Tran, Neomi Millan, Jamie M Gallimore, Kamille Parungao, Jonathan Fong, Brian M Suzuki, Zhenze Jiang, Jun Isoe, Alberto A Rascón | PLoS Neglected Tropical Diseases | 2025-02-06 | Abstract | |
| Tixagevimab/cilgavimab or placebo for COVID-19 in ACTIV-2: Safety, pharmacokinetics and neutralizing and anti-drug antibodies. | Rachel A Bender Ignacio, Kara W Chew, Carlee Moser, Judith S Currier, Joseph J Eron, Arzhang Cyrus Javan, Mark J Giganti, Justin Ritz, Michael Gibbs, Hervé Tchouakam Kouekam, Mark T Esser, Eric S Daar, Manish Choudhary, Rinki Deo, Courtney V Fletcher, Jonathan Z Li, Michael D Hughes, Davey Smith, David Alain Wohl, | IScience | 2025-02-04 | Abstract | |
| Chronic conditions, COVID-19 vaccination, and institutional trust among Hispanic/Latinx communities in San Diego, California. | Samantha Streuli, Argentina E Servin, Linda Salgin, Fatima A Muñoz, Davey M Smith, Jamila K Stockman, Sophie E O'Bryan, Daniel Ramirez, Cynthia James-Price, Britt Skaathun | Preventive Medicine | 2025-02-03 | Abstract | |
| Adenosine deaminase and deoxyadenosine regulate intracellular immune response in . | Nicole D Wernet, Eillen Tecle, Mario Bardan Sarmiento, Cheng-Ju Kuo, Crystal B Chhan, Ian Baick, Lakshmi E Batachari, Latisha Franklin, Alice Herneisen, Gira Bhabha, Damian C Ekiert, Wendy Hanna-Rose, Emily R Troemel | IScience | 2025-02-03 | Abstract | |
| Essential oils modulate virulence phenotypes in a multidrug-resistant pyomelanogenic Pseudomonas aeruginosa clinical isolate. | Jayalekshmi Haripriyan, Christy Rose Binu, Nitasha D Menon, Muralidharan Vanuopadath, Malavika B Hari, N Namitha, Kesiya Binoy, Anil Kumar, Bipin G Nair, Victor Nizet, Geetha B Kumar | Scientific Reports | 2025-01-30 | Abstract | |
| Fatuamide A, a Hybrid PKS/NRPS Metallophore from a sp. Marine Cyanobacterium Collected in American Samoa. | Kelsey L Alexander, C Benjamin Naman, Arihiro Iwasaki, Alfonso Mangoni, Tiago Leao, Raphael Reher, Daniel Petras, Hyunwoo Kim, Eva Ternon, Eduardo J E Caro-Diaz, Evgenia Glukhov, Jana A Mitrevska, Nicole E Avalon, Brendan M Duggan, Lena Gerwick, William H Gerwick | Journal Of Natural Products | 2025-01-29 | Abstract | |
| A human gut bacterium antagonizes neighboring bacteria by altering their protein-folding ability. | Bentley Lim, Jinghua Xu, Igor H Wierzbicki, Carlos G Gonzalez, Zhe Chen, David J Gonzalez, Xiang Gao, Andrew L Goodman | Cell Host & Microbe | 2025-01-29 | Abstract | |
| Approach to Therapy for Chronic Pouchitis. | Maia Kayal, Brigid Boland | Annual Review Of Medicine | 2025-01-27 | Abstract | |
| Microbial Community Metabolism of Coral Reef Exometabolomes Broadens the Chemodiversity of Labile Dissolved Organic Matter. | Zachary A Quinlan, Craig E Nelson, Irina Koester, Daniel Petras, Louis-Felix Nothias, Jacqueline Comstock, Brandie M White, Lihini I Aluwihare, Barbara A Bailey, Craig A Carlson, Pieter C Dorrestein, Andreas F Haas, Linda Wegley Kelly | Environmental Microbiology | 2025-01-27 | Abstract | |
| Vaccination with mRNA-encoded membrane-bound HIV Envelope trimer induces neutralizing antibodies in animal models. | Parham Ramezani-Rad, Christopher A Cottrell, Ester Marina-Zárate, Alessia Liguori, Elise Landais, Jonathan L Torres, Amber Myers, Jeong Hyun Lee, Sabyasachi Baboo, Claudia Flynn, Katherine McKenney, Eugenia Salcedo, Xiaoya Zhou, Oleksandr Kalyuzhniy, Erik Georgeson, Nicole Phelps, Danny Lu, Saman Eskandarzadeh, Sergey Menis, Michael Kubitz, Bettina Groschel, Nushin Alavi, Abigail M Jackson, Wen-Hsin Lee, Andy S Tran, Elana Ben-Akiva, Katarzyna Kaczmarek Michaels, Jolene K Diedrich, Chiamaka A Enemuo, Vanessa Lewis, Arpan Pradhan, Sudhir Pai Kasturi, Torben Schiffner, Jon M Steichen, Diane G Carnathan, Sunny Himansu, John R Yates, James C Paulson, Gabriel Ozorowski, Darrell J Irvine, Guido Silvestri, Devin Sok, Andrew B Ward, Shane Crotty, William R Schief | BioRxiv : The Preprint Server For Biology | 2025-01-25 | Abstract | |
| Unraveling Mechanisms of Genetic Risks in Metabolic Dysfunction-Associated Steatotic Liver Diseases: A Pathway to Precision Medicine. | Xiang Zhang, Kyong-Mi Chang, Jun Yu, Rohit Loomba | Annual Review Of Pathology | 2025-01-24 | Abstract | |
| Cyclosporine Treatment in Patients with Kawasaki Disease and Coronary Artery Aneurysms or Treatment Resistance. | Irene Bellicini, Emelia Bainto, Chisato Shimizu, Jane C Burns, Adriana H Tremoulet | The Journal Of Pediatrics | 2025-01-24 | Abstract | |
| Enhanced suppression of by a three-phage cocktail: genomic insights and kinetic profiling. | Alisha N Monsibais, Olivia Tea, Pooja Ghatbale, Sage J B Dunham, Mirjam Zünd, Jennifer Phan, Karen Lam, McKenna Paulson, Natalie Tran, Diana S Suder, Alisha N Blanc, Cyril Samillano, Joy Suh, Hanna Atif, Ethan Vien, Ryan Nguyen, Allene Vo, Shane Gonen, David Pride, Katrine Whiteson | Antimicrobial Agents And Chemotherapy | 2025-01-22 | Abstract | |
| Multi-omic signatures of host response associated with presence, type, and outcome of enterococcal bacteremia. | Charlie Bayne, Dominic McGrosso, Concepcion Sanchez, Leigh-Ana Rossitto, Maxwell Patterson, Carlos Gonzalez, Courtney Baus, Cecilia Volk, Haoqi Nina Zhao, Pieter Dorrestein, Victor Nizet, George Sakoulas, David J Gonzalez, Warren Rose | MSystems | 2025-01-21 | Abstract | |
| Role of Intestinal Microbiome in Potentiating Inflammation and Predicting Outcomes in Alcohol-Associated Cirrhosis. | Sidsel Støy, Bernd Schnabl | Gastroenterology Clinics Of North America | 2025-01-18 | Abstract | |
| Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data. | Caitlin Guccione, Lucas Patel, Yoshihiko Tomofuji, Daniel McDonald, Antonio Gonzalez, Gregory D Sepich-Poore, Kyuto Sonehara, Mohsen Zakeri, Yang Chen, Amanda Hazel Dilmore, Neil Damle, Sergio E Baranzini, George Hightower, Teruaki Nakatsuji, Richard L Gallo, Ben Langmead, Yukinori Okada, Kit Curtius, Rob Knight | Nature Communications | 2025-01-18 | Abstract | |
| A Pilot Study Exploring the Relationship Between Milk Composition and Microbial Capacity in Breastfed Infants. | Ashwana D Fricker, Kristija Sejane, Mina Desai, Michael W Snyder, Luis Duran, Rachel Mackelprang, Lars Bode, Michael G Ross, Gilberto E Flores | Nutrients | 2025-01-18 | Abstract | |
| Design, Synthesis, and Unprecedented Interactions of Covalent Dipeptide-Based Inhibitors of SARS-CoV-2 Main Protease and Its Variants Displaying Potent Antiviral Activity. | Philipp Flury, Nadine Krüger, Katharina Sylvester, Julian Breidenbach, Ghazl Al Hamwi, Jingxin Qiao, Yan Chen, Cheila Rocha, Mateus Sá Magalhães Serafim, Elany Barbosa da Silva, Stefan Pöhlmann, Antti Poso, Thales Kronenberger, Katharina Rox, Anthony J O'Donoghue, Shengyong Yang, Norbert Sträter, Michael Gütschow, Stefan A Laufer, Christa E Müller, Thanigaimalai Pillaiyar | Journal Of Medicinal Chemistry | 2025-01-15 | Abstract | |
| Discovery of robust and highly specific microbiome signatures of non-alcoholic fatty liver disease. | Emmanouil Nychas, Andrea Marfil-Sánchez, Xiuqiang Chen, Mohammad Mirhakkak, Huating Li, Weiping Jia, Aimin Xu, Henrik Bjørn Nielsen, Max Nieuwdorp, Rohit Loomba, Yueqiong Ni, Gianni Panagiotou | Microbiome | 2025-01-14 | Abstract | |
| Pangenome mining of the Streptomyces genus redefines species' biosynthetic potential. | Omkar S Mohite, Tue S Jørgensen, Thomas J Booth, Pep Charusanti, Patrick V Phaneuf, Tilmann Weber, Bernhard O Palsson | Genome Biology | 2025-01-14 | Abstract | |
| Inhalable biohybrid microrobots: a non-invasive approach for lung treatment. | Zhengxing Li, Zhongyuan Guo, Fangyu Zhang, Lei Sun, Hao Luan, Zheng Fang, Jeramy L Dedrick, Yichen Zhang, Christine Tang, Audrey Zhu, Yiyan Yu, Shichao Ding, Dan Wang, An-Yi Chang, Lu Yin, Lynn M Russell, Weiwei Gao, Ronnie H Fang, Liangfang Zhang, Joseph Wang | Nature Communications | 2025-01-14 | Abstract | |
| T cells are necessary for development of PCOS reproductive symptoms in a letrozole-induced mouse model of PCOS. | Naveena Ujagar, Leandro M Velez, Gabriela De Robles, Christy Nguyen, Kiara Wiggins, Joshua Kim, Nandini Naidu, Julio Ayala Angulo, Alexander S Kauffman, Varykina G Thackray, Beata Banaszewska, Ewa Wysocka, Antoni Duleba, Marcus Seldin, Dequina Nicholas | BioRxiv : The Preprint Server For Biology | 2025-01-13 | Abstract | |
| Sexual Networks and Behavioral Characteristics of HIV-Positive Male Military Members, Female Sex Workers, and Male Civilians. | Michael P Grillo, Karen Saylors, Bonnie R Tran, Nichelle Brown, Osika Tripathi, Jordan Killion, Carol Macera, Babacar Faye, Ernest C Chisoko, Mapoma Kabengele, Anthony M Mutombe, Cyrille F Djoko, Davey Smith, Antoine Chaillon | AIDS And Behavior | 2025-01-13 | Abstract | |
| Erwinia phage Asesino is a nucleus-forming phage that lacks PhuZ. | Amy Prichard, Annika Sy, Justin Meyer, Elizabeth Villa, Joe Pogliano | Scientific Reports | 2025-01-11 | Abstract | |
| 2'-Fucosyllactose inhibits human norovirus replication in human intestinal enteroids. | Ketki Patil, B Vijayalakshmi Ayyar, Nicole M Hayes, Frederick H Neill, Lars Bode, Mary K Estes, Robert L Atmar, Sasirekha Ramani | Journal Of Virology | 2025-01-10 | Abstract | |
| Medication use is associated with distinct microbial features in anxiety and depression. | Amanda Hazel Dilmore, Rayus Kuplicki, Daniel McDonald, Megha Kumar, Mehrbod Estaki, Nicholas Youngblut, Alexander Tyakht, Gail Ackermann, Colette Blach, Siamak MahmoudianDehkordi, Boadie W Dunlop, Sudeepa Bhattacharyya, Salvador Guinjoan, Pooja Mandaviya, Ruth E Ley, Rima Kaddaruh-Dauok, Martin P Paulus, Rob Knight, | Molecular Psychiatry | 2025-01-10 | Abstract | |
| Design, optimization, and inference of biphasic decay of infectious virus particles. | Jérémy Seurat, Krista R Gerbino, Justin R Meyer, Joshua M Borin, Joshua S Weitz | Journal Of Theoretical Biology | 2025-01-10 | Abstract | |
| Biomarkers. | M Arthur Moseley, Oliver Fiehn, Pieter Dorrestein, Tuulia Hyotylainen, Matej Oresic, David Wishart, Nina Zhao, Rima F Kaddurah-Daouk, | Alzheimer's & Dementia : The Journal Of The Alzheimer's Association | 2025-01-09 | Abstract | |
| Biomarkers. | Jennifer S Labus, Kwangsik Nho, Simone Zuffa, Richa Batra, Michael Meehan, Kiana West, Jasmine Zemlin, Andres Mauricio Caraballo-Rodriguez, Pieter Dorrestein, Rima Kaddurah-Daouk, | Alzheimer's & Dementia : The Journal Of The Alzheimer's Association | 2025-01-09 | Abstract | |
| Biomarkers. | Haoqi Nina Zhao, Ipsita Mohanty, Rima F Kaddurah-Daouk, , Pieter Dorrestein | Alzheimer's & Dementia : The Journal Of The Alzheimer's Association | 2025-01-09 | Abstract | |
| Public Health. | Annalise Schweickart, Kevin Huynh, Richa Batra, Bryan J Neth, Cameron Martino, Amanda H Dilmore, Corey Giles, Tingting Wang, Natalie A Mellett, Thy Duong, Liat Shenhav, Anru Zhang, Pixu Shi, Naama Karu, Kiana West, Jasmine Zemlin, Gibraan Rahman, Morgan Panitchpakdi, Michael Meehan, Kelly C Weldon, Thomas C Register, Matthias Arnold, Peter J Meikle, Leyla Schimmel, Kaj Blennow, Henrik Zetterberg, Colette Blach, Pieter Dorrestein, Rob Knight, Jan Krumsiek, Rima Kaddurah-Daouk, , Suzanne Craft | Alzheimer's & Dementia : The Journal Of The Alzheimer's Association | 2025-01-09 | Abstract | |
| Biomarkers. | Jea Woo Kang, Lora A Khatib, Amanda H Dilmore, Margo B Heston, Tyler K Ulland, Sterling C Johnson, Sanjay Asthana, Cynthia M Carlsson, Nathaniel A Chin, Erin M Jonaitis, Kaj Blennow, Henrik Zetterberg, Rob Knight, Rima Kaddurah-Daouk, Federico E Rey, Barbara B Bendlin, | Alzheimer's & Dementia : The Journal Of The Alzheimer's Association | 2025-01-09 | Abstract | |
| Biomarkers. | Darby Peter, Margo B Heston, Qilin Hong, Puja Agarwal, Tyler K Ulland, Sterling C Johnson, Sanjay Asthana, Rob Knight, Rima Kaddurah-Daouk, Henrik Zetterberg, Kaj Blennow, Federico E Rey, Barbara B Bendlin | Alzheimer's & Dementia : The Journal Of The Alzheimer's Association | 2025-01-09 | Abstract | |
| Biomarkers. | Darby Peter, Margo B Heston, Erin M Jonaitis, Nathaniel A Chin, Sterling C Johnson, Sanjay Asthana, Cynthia M Carlsson, Rob Knight, Rima Kaddurah-Daouk, Kaj Blennow, Henrik Zetterberg, Federico E Rey, Barbara B Bendlin | Alzheimer's & Dementia : The Journal Of The Alzheimer's Association | 2025-01-09 | Abstract | |
| Biomarkers. | Jea Woo Kang, Lora A Khatib, Amanda H Dilmore, Margo B Heston, Tyler K Ulland, Sterling C Johnson, Sanjay Asthana, Cynthia M Carlsson, Nathaniel A Chin, Rob Knight, Rima Kaddurah-Daouk, Federico E Rey, Barbara B Bendlin, | Alzheimer's & Dementia : The Journal Of The Alzheimer's Association | 2025-01-09 | Abstract | |
| Biomarkers. | Jennifer S Labus, Margo B Heston, Emeran A Mayer, Ipsita Mohanty, Thai Tran, Kevin Huynh, Arpana Gupta, Federico E Rey, Antonio González, Amanda H Dilmore, Rob Knight, Rima Kaddurah-Daouk, Barbara B Bendlin, | Alzheimer's & Dementia : The Journal Of The Alzheimer's Association | 2025-01-09 | Abstract | |
| Biomarkers. | Natalia Palacios, Scot Gordon, Tao Wang, Curtis Huttenhower, Hector M Gonzalez, Rob Knight, Charles Decarli, Martha L Daviglus, Melissa Lamar, Wassim Tarraf, Jianwen Cai, Robbie Burk, Quibin Qi, Robert C Kaplan | Alzheimer's & Dementia : The Journal Of The Alzheimer's Association | 2025-01-09 | Abstract | |
| Global Epidemiology of Alcohol-Related Liver Disease, Liver Cancer, and Alcohol Use Disorder, 2000-2021. | Pojsakorn Danpanichkul, Luis Antonio Díaz, Kanokphong Suparan, Primrose Tothanarungroj, Supapitch Sirimangklanurak, Thanida Auttapracha, Hanna L Blaney, Banthoon Sukphutanan, Yanfang Pang, Siwanart Kongarin, Francisco Idalsoaga, Eduardo Fuentes-López, Lorenzo Leggio, Mazen Noureddin, Trenton M White, Alexandre Louvet, Philippe Mathurin, Rohit Loomba, Patrick S Kamath, Jürgen Rehm, Jeffrey V Lazarus, Karn Wijarnpreecha, Juan Pablo Arab | Clinical And Molecular Hepatology | 2025-01-09 | Abstract | |
| RNA control of reverse transcription in a diversity-generating retroelement. | Sumit Handa, Tapan Biswas, Jeet Chakraborty, Gourisankar Ghosh, Blair G Paul, Partho Ghosh | Nature | 2025-01-08 | Abstract | |
| Enhanced Killing of Methicillin-Resistant Staphylococcus aureus with Ceftaroline or Vancomycin in Combination with Carbapenems. | Allen Jankeel, Gabriel Pérez-Parra, Anuj K Khetarpal, Ivan A Alvarado, Victor Nizet, George Sakoulas, Erlinda R Ulloa | The Journal Of Infectious Diseases | 2025-01-08 | Abstract | |
| A genome-scale metabolic model for the denitrifying bacterium Thauera sp. MZ1T accurately predicts degradation of pollutants and production of polymers. | Diego Tec-Campos, Juan D Tibocha-Bonilla, Celina Jiang, Anurag Passi, Deepan Thiruppathy, Cristal Zuñiga, Camila Posadas, Alejandro Zepeda, Karsten Zengler | PLoS Computational Biology | 2025-01-07 | Abstract | |
| . | Srishti Saha, Bernd Schnabl | Expert Review Of Gastroenterology & Hepatology | 2025-01-06 | Abstract | |
| A multiplex method for rapidly identifying viral protease inhibitors. | Seo Jung Hong, Samuel J Resnick, Sho Iketani, Ji Won Cha, Benjamin Alexander Albert, Christopher T Fazekas, Ching-Wen Chang, Hengrui Liu, Shlomi Dagan, Michael R Abagyan, Pavla Fajtová, Bruce Culbertson, Brooklyn Brace, Eswar R Reddem, Farhad Forouhar, J Fraser Glickman, James M Balkovec, Brent R Stockwell, Lawrence Shapiro, Anthony J O'Donoghue, Yosef Sabo, Joel S Freundlich, David D Ho, Alejandro Chavez | Molecular Systems Biology | 2025-01-06 | Abstract | |
| A Similar Mutation in the AAUU-Rich Elements of the Mouse TNF Gene Results in a Distinct Ileocolitic Phenotype: A New Strain of TNF-Overexpressing Mice. | Amruth Chilukuri, Margaret Kim, Taniya Mitra, John M Gubatan, Josef Urrete, Leo D Saxon, Amber Ablack, Zbigniew Mikulski, Katarzyna Dobaczewska, Zining Shen, Mary Keir, Tangsheng Yi, Prabhdeep Kaur, Patricia Oliveira, Jessica Murillo-Saich, Eric Y Chang, Calen A Steiner, Paul Jedlicka, Mónica Guma, Jesús Rivera-Nieves | Inflammatory Bowel Diseases | 2025-01-04 | Abstract | |
| Tofacitinib Mitigates the Increased SARS-CoV-2 Infection Susceptibility Caused by an IBD Risk Variant in the PTPN2 Gene. | Marianne R Spalinger, Golshid Sanati, Pritha Chatterjee, Rong Hai, Jiang Li, Alina N Santos, Tara M Nordgren, Michel L Tremblay, Lars Eckmann, Elaine Hanson, Michael Scharl, Xiwei Wu, Brigid S Boland, Declan F McCole | Cellular And Molecular Gastroenterology And Hepatology | 2025-01-03 | Abstract | |
| Evidence for microbially-mediated tradeoffs between growth and defense throughout coral evolution. | Hannah E Epstein, Tanya Brown, Ayọmikun O Akinrinade, Ryan McMinds, F Joseph Pollock, Dylan Sonett, Styles Smith, David G Bourne, Carolina S Carpenter, Rob Knight, Bette L Willis, Mónica Medina, Joleah B Lamb, Rebecca Vega Thurber, Jesse R Zaneveld | Animal Microbiome | 2025-01-03 | Abstract | |
| Innate immune cells link dietary cues to normal and abnormal metabolic regulation. | Peng Zhang, Kosuke Watari, Michael Karin | Nature Immunology | 2025-01-02 | Abstract | |
| Deciphering metabolic differentiation during Bacillus subtilis sporulation. | Juan D Tibocha-Bonilla, Jelani Lyda, Eammon Riley, Kit Pogliano, Karsten Zengler | Nature Communications | 2025-01-02 | Abstract | |
| System vaccinology analysis of predictors and mechanisms of antibody response durability to multiple vaccines in humans. | Mario Cortese, Thomas Hagan, Nadine Rouphael, Sheng-Yang Wu, Xia Xie, Dmitri Kazmin, Florian Wimmers, Shakti Gupta, Robbert van der Most, Margherita Coccia, Prabhu S Aranuchalam, Helder I Nakaya, Yating Wang, Elizabeth Coyle, Shu Horiuchi, Hanchih Wu, Mary Bower, Aneesh Mehta, Clifford Gunthel, Steve E Bosinger, Yuri Kotliarov, Foo Cheung, Pamela L Schwartzberg, Ronald N Germain, John Tsang, Shuzhao Li, Randy Albrecht, Hideki Ueno, Shankar Subramaniam, Mark J Mulligan, Surender Khurana, Hana Golding, Bali Pulendran | Nature Immunology | 2025-01-02 | Abstract | |
| FBP1 controls liver cancer evolution from senescent MASH hepatocytes. | Li Gu, Yahui Zhu, Shuvro P Nandi, Maiya Lee, Kosuke Watari, Breanna Bareng, Masafumi Ohira, Yuxiao Liu, Sadatsugu Sakane, Rodrigo Carlessi, Consuelo Sauceda, Debanjan Dhar, Souradipta Ganguly, Mojgan Hosseini, Marcos G Teneche, Peter D Adams, David J Gonzalez, Tatiana Kisseleva, , Janina E E Tirnitz-Parker, M Celeste Simon, Ludmil B Alexandrov, Michael Karin | Nature | 2025-01-01 | Abstract | |
| Decomposition of the pangenome matrix reveals a structure in gene distribution in the species. | Siddharth M Chauhan, Omid Ardalani, Jason C Hyun, Jonathan M Monk, Patrick V Phaneuf, Bernhard O Palsson | MSphere | 2024-12-31 | Abstract | |
| Gut microbiota in treating inflammatory digestive diseases: Current challenges and therapeutic opportunities. | Yongpeng Shi, Zeran Chen, Tingyu Fang, Xingyao Chen, Youpeng Deng, Hao Qin, Min Lian, Juntao Shen, Yuru Zong, Huikuan Chu, Constanze Hoebinger, Hao Guo, Zhongshang Yuan, Jie Zheng, Yongjian Zhou, Yue Pan, Beatriz G Mendes, Sonja Lang, Tim Hendrikx, Suling Zeng, Hailong Cao, Ling Yang, Lianmin Chen, Peng Chen, Lei Dai, Hua Wang, Shi Yin, Shu Zhu, Xiong Ma, Bernd Schnabl, Hanqing Chen, Yi Duan | IMeta | 2024-12-31 | Abstract | |
| Modulating the human gut microbiome and health markers through kombucha consumption: a controlled clinical study. | Gertrude Ecklu-Mensah, Rachel Miller, Maria Gjerstad Maseng, Vienna Hawes, Denise Hinz, Cheryl Kim, Jack A Gilbert | Scientific Reports | 2024-12-30 | Abstract | |
| Revealing systematic changes in the transcriptome during the transition from exponential growth to stationary phase. | Hyun Gyu Lim, Ye Gao, Kevin Rychel, Cameron Lamoureux, Xuwen A Lou, Bernhard O Palsson | MSystems | 2024-12-26 | Abstract | |
| TEMPTED: time-informed dimensionality reduction for longitudinal microbiome studies. | Pixu Shi, Cameron Martino, Rungang Han, Stefan Janssen, Gregory Buck, Myrna Serrano, Kouros Owzar, Rob Knight, Liat Shenhav, Anru R Zhang | Genome Biology | 2024-12-19 | Abstract | |
| resensitization of multidrug-resistant clinical isolates of and through phage-antibiotic synergy. | Pooja Ghatbale, Govind Prasad Sah, Sage Dunham, Ethan Khong, Alisha Blanc, Alisha Monsibais, Andrew Garcia, Robert T Schooley, Ana G Cobián Güemes, Katrine Whiteson, David T Pride | Antimicrobial Agents And Chemotherapy | 2024-12-19 | Abstract | |
| Soil microbiome interventions for carbon sequestration and climate mitigation. | Gwyn A Beattie, Anna Edlund, Nwadiuto Esiobu, Jack Gilbert, Mette Haubjerg Nicolaisen, Janet K Jansson, Paul Jensen, Marco Keiluweit, Jay T Lennon, Jennifer Martiny, Vanessa R Minnis, Dianne Newman, Raquel Peixoto, Christopher Schadt, Jan Roelof van der Meer | MSystems | 2024-12-18 | Abstract | |
| Pathobiont-driven antibody sialylation through IL-10 undermines vaccination. | Chih-Ming Tsai, Irshad A Hajam, J R Caldera, Austin Wt Chiang, Cesia Gonzalez, Xin Du, Biswa Choudhruy, Haining Li, Emi Suzuki, Fatemeh Askarian, Ty'Tianna Clark, Brian Lin, Igor H Wierzbicki, Angelica M Riestra, Douglas J Conrad, David J Gonzalez, Victor Nizet, Nathan E Lewis, George Y Liu | The Journal Of Clinical Investigation | 2024-12-16 | Abstract | |
| Immunization but not natural infection of horses results in antibody activity against the S protein of Streptococcus equi subsp equi. | Noah D Cohen, Emma V Hughes, Charlie Bayne, Ellen Ruth A Morris, Jocelyne M Bray, Kerstin K Landrock, Danielle M Gonzales, Reagan M Baker, Rafaela L Klein, Wen Liu, Rebecca M Legere, S Garrett Wehmeyer, Angela I Bordin, Igor H Wierzbicki, David J Gonzalez | American Journal Of Veterinary Research | 2024-12-16 | Abstract | |
| Antibiotic-perturbed microbiota and the role of probiotics. | Hania Szajewska, Karen P Scott, Tim de Meij, Sofia K Forslund-Startceva, Rob Knight, Omry Koren, Paul Little, Bradley C Johnston, Jan Łukasik, Jotham Suez, Daniel J Tancredi, Mary Ellen Sanders | Nature Reviews. Gastroenterology & Hepatology | 2024-12-11 | Abstract | |
| Bactericidal efficacy of low dose gaseous ozone against clinically relevant multidrug-resistant bacteria. | Bob Banerjee, Christine Thompson, Victor Nizet, Elisabet Bjånes | Frontiers In Microbiology | 2024-12-11 | Abstract | |
| Pyrazinyl-Substituted Aminoazoles as Covalent Inhibitors of Thrombin: Synthesis, Structure, and Anticoagulant Properties. | Lukas Imberg, Alena I Siutkina, Catharina Erbacher, Judith Schmidt, Darius F Broekmans, Ruzanna A Ovsepyan, Constantin G Daniliuc, Ellen Gonçalves de Oliveira, Mateus Sá Magalhães Serafim, Anthony J O'Donoghue, Thanigaimalai Pillaiyar, Mikhail A Panteleev, Antti Poso, Svetlana A Kalinina, Marcel Bermúdez, Katrin Nekipelov, Gerd Bendas, Uwe Karst, Dmitrii V Kalinin | ACS Pharmacology & Translational Science | 2024-12-11 | Abstract | |
| Correction to: Genetic Risk, Dysbiosis, and Treatment Stratification Using Host Genome and Gut Microbiome in Inflammatory Bowel Disease. | Ahmed Moustafa, Weizhong Li, Ericka L Anderson, Emily H MWong, Parambir S Dulai, William J Sandborn, William Biggs, Shibu Yooseph, Marcus B Jones, Craig J Venter, Karen E Nelson, John T Chang, Amalio Telenti, Brigid S Boland | Clinical And Translational Gastroenterology | 2024-12-10 | Abstract | |
| HBV Remodels PP2A Complexes to Rewire Kinase Signaling in Hepatocellular Carcinoma. | Rigney E Turnham, Adriana Pitea, Gwendolyn M Jang, Zhong Xu, Huat Chye Lim, Alex L Choi, John Von Dollen, Rebecca S Levin, James T Webber, Elizabeth McCarthy, Junjie Hu, Xiaolei Li, Li Che, Ananya Singh, Alex Yoon, Gary Chan, Robin K Kelley, Danielle L Swaney, Wei Zhang, Sourav Bandyopadhyay, Fabian J Theis, Manon Eckhardt, Xin Chen, Kevan M Shokat, Trey Ideker, Nevan J Krogan, John D Gordan | Cancer Research | 2024-12-09 | Abstract | |
| Rapid and accurate testing for urinary tract infection: new clothes for the emperor. | Robert B Moreland, Linda Brubaker, Lana Tinawi, Alan J Wolfe | Clinical Microbiology Reviews | 2024-12-06 | Abstract | |
| Anthelmintic Treatment Reveals Sex-Dependent Worm-Gut Microbiota Interactions. | Kate A Sabey, Avina Castro, Se Jin Song, Rob Knight, Vanessa O Ezenwa | Parasite Immunology | 2024-12-05 | Abstract | |
| Clinical perspectives on the value of testing for and mutations in advanced NSCLC. | Michelle Shiller, Melissa Johnson, Robert Auber, Sandip Pravin Patel | Frontiers In Oncology | 2024-12-05 | Abstract | |
| Antiretroviral Drugs for Treatment and Prevention of HIV in Adults: 2024 Recommendations of the International Antiviral Society-USA Panel. | Rajesh T Gandhi, Raphael J Landovitz, Paul E Sax, Davey M Smith, Sandra A Springer, Huldrych F Günthard, Melanie A Thompson, Roger J Bedimo, Constance A Benson, Susan P Buchbinder, Brenda E Crabtree-Ramirez, Carlos Del Rio, Ellen F Eaton, Joseph J Eron, Jennifer F Hoy, Clara Lehmann, Jean-Michel Molina, Donna M Jacobsen, Michael S Saag | JAMA | 2024-12-01 | Abstract | |
| Inferring strain-level mutational drivers of phage-bacteria interaction phenotypes arising during coevolutionary dynamics. | Adriana Lucia-Sanz, Shengyun Peng, Chung Yin Joey Leung, Animesh Gupta, Justin R Meyer, Joshua S Weitz | Virus Evolution | 2024-11-29 | Abstract | |
| Perspective: Current Scientific Evidence and Research Strategies in the Role of Almonds in Cardiometabolic Health. | Paula R Trumbo, Jamy Ard, France Bellisle, Adam Drewnowski, Jack A Gilbert, Ronald Kleinman, Anoop Misra, John Sievenpiper, Maha Tahiri, Karol E Watson, James Hill | Current Developments In Nutrition | 2024-11-28 | Abstract | |
| Fostering healthy cognitive ageing in people living with HIV. | Lucette A Cysique, Jules Levin, Chris Howard, Jeff Taylor, John Rule, Jane Costello, Jane Bruning, Priscilla Njeri, Amy B Mullens, Edwina Wright, Hetta Gouse, Kirstie Daken, Mattia Trunfio, Htein Linn Aung, Reuben N Robbins, Christopher M Ferraris, Jose A Muñoz-Moreno, Steven P Woods, David J Moore, Christopher Power, Pui Li Wong, Kejal Hasmukharay, Primrose Nyamayaro, Jaime Vera, Reena Rajasuriar, Robert K Heaton, Karl Goodkin, Scott Letendre, Ronald J Ellis, Bruce J Brew, Sean B Rourke, | The Lancet. HIV | 2024-11-27 | Abstract | |
| Interleukin-2-secreting T helper cells promote extra-follicular B cell maturation via intrinsic regulation of a B cell mTOR-AKT-Blimp-1 axis. | Caterina E Faliti, Maria Mesina, Jinyong Choi, Simon Bélanger, Monique A Marshall, Christopher M Tipton, Sakeenah Hicks, Prashanti Chappa, Maria A Cardenas, Mohamed Abdel-Hakeem, Theresa C Thinnes, Christopher Cottrell, Christopher D Scharer, William R Schief, David Nemazee, Matthew C Woodruff, John M Lindner, Ignacio Sanz, Shane Crotty | Immunity | 2024-11-26 | Abstract | |
| Tamm-Horsfall protein augments neutrophil NETosis during urinary tract infection. | Vicki Mercado-Evans, Holly Branthoover, Claude Chew, Camille Serchejian, Alexander B Saltzman, Marlyd E Mejia, Jacob J Zulk, Ingrid Cornax, Victor Nizet, Kathryn A Patras | JCI Insight | 2024-11-26 | Abstract | |
| Carmaphycin B-Based Proteasome Inhibitors to Treat Human African Trypanosomiasis: Structure-Activity Relationship and Efficacy. | Lawrence J Liu, Karol R Francisco, Yujie Uli Sun, Mateus Sá Magalhães Serafim, Dilini K Amarasinghe, Thaiz R Teixeira, Bobby Lucero, Thales Kronenberger, Waad Elsayed, Hala Elwakeel, Momen Al-Hindy, Jehad Almaliti, William H Gerwick, Anthony J O'Donoghue, Conor R Caffrey | ACS Infectious Diseases | 2024-11-26 | Abstract | |
| Heterozygous BTNL8 variants in individuals with multisystem inflammatory syndrome in children (MIS-C). | Evangelos Bellos, Dilys Santillo, Pierre Vantourout, Heather R Jackson, Amedine Duret, Henry Hearn, Yoann Seeleuthner, Estelle Talouarn, Stephanie Hodeib, Harsita Patel, Oliver Powell, Sophya Yeoh, Sobia Mustafa, Dominic Habgood-Coote, Samuel Nichols, Leire Estramiana Elorrieta, Giselle D'Souza, Victoria J Wright, Diego Estrada-Rivadeneyra, Adriana H Tremoulet, Kirsten B Dummer, Stejara A Netea, Antonio Condino-Neto, Yu Lung Lau, Esmeralda Núñez Cuadros, Julie Toubiana, Marisol Holanda Pena, Frédéric Rieux-Laucat, Charles-Edouard Luyt, Filomeen Haerynck, Jean Louis Mège, Samya Chakravorty, Elie Haddad, Marie-Paule Morin, Özge Metin Akcan, Sevgi Keles, Melike Emiroglu, Gulsum Alkan, Sadiye Kübra Tüter Öz, Sefika Elmas Bozdemir, Guillaume Morelle, Alla Volokha, Yasemin Kendir-Demirkol, Betul Sözeri, Taner Coskuner, Aysun Yahsi, Belgin Gulhan, Saliha Kanik-Yuksek, Gulsum Iclal Bayhan, Aslinur Ozkaya-Parlakay, Osman Yesilbas, Nevin Hatipoglu, Tayfun Ozcelik, Alexandre Belot, Emilie Chopin, Vincent Barlogis, Esra Sevketoglu, Emin Menentoglu, Zeynep Gokce Gayretli Aydin, Marketa Bloomfield, Suzan A AlKhater, Cyril Cyrus, Yuriy Stepanovskiy, Anastasiia Bondarenko, Fatma Nur Öz, Meltem Polat, Jiří Fremuth, Jan Lebl, Amyrath Geraldo, Emmanuelle Jouanguy, , , , Michael J Carter, Paul Wellman, Mark Peters, Rebeca Pérez de Diego, Lindsey Ann Edwards, Christopher Chiu, Mahdad Noursadeghi, Alexandre Bolze, Chisato Shimizu, Myrsini Kaforou, Melissa Shea Hamilton, Jethro A Herberg, Erica G Schmitt, Agusti Rodriguez-Palmero, Aurora Pujol, Jihoon Kim, Aurélie Cobat, Laurent Abel, Shen-Ying Zhang, Jean-Laurent Casanova, Taco W Kuijpers, Jane C Burns, Michael Levin, Adrian C Hayday, Vanessa Sancho-Shimizu | The Journal Of Experimental Medicine | 2024-11-22 | Abstract | |
| Pattern-Based Genome Mining Guides Discovery of the Antibiotic Indanopyrrole A from a Marine Streptomycete. | Douglas Sweeney, Alexander Bogdanov, Alexander B Chase, Gabriel Castro-Falcón, Alma Trinidad-Javier, Samira Dahesh, Victor Nizet, Paul R Jensen | Journal Of Natural Products | 2024-11-22 | Abstract | |
| Community utilization of a co-created COVID-19 testing program in a US/Mexico border community. | Breanna J Reyes, Stephenie Tinoco Calvillo, Arleth A Escoto, Angel Lomeli, Maria Linda Burola, Luis Gay, Ariel Cohen, Isabel Villegas, Linda Salgin, Kelli L Cain, Dylan Pilz, Paul Watson, Bill Oswald, Cesar Arevalo, Jessica Sanchez, Marjorie Richardson, Jennifer Nelson, Pricilla Villanueva, Garrett McGaugh, Ilya Zaslavsky, Robert H Tukey, Nicole A Stadnick, Borsika A Rabin, Louise C Laurent, Marva Seifert | BMC Public Health | 2024-11-18 | Abstract | |
| Phase I study of a recombinant attenuated oncolytic virus, MEDI5395 (NDV-GM-CSF), administered systemically in combination with durvalumab in patients with advanced solid tumors. | Diwakar Davar, Benedito A Carneiro, Grace K Dy, Siddharth Sheth, Mitesh J Borad, Kevin J Harrington, Sandip P Patel, Evanthia Galanis, Adel Samson, Sonia Agrawal, Zhongying Chen, Chunling Fan, Maozhen Gong, Jenny Burton, Eric Tu, Nicholas Durham, Kevin Laubscher, Fernanda Arnaldez, Dmitriy Zamarin | Journal For Immunotherapy Of Cancer | 2024-11-17 | Abstract | |
| Possible Missing Sources of Atmospheric Glyoxal Part II: Oxidation of Toluene Derived from the Primary Production of Marine Microorganisms. | Renee T Williams, Annika Caspers-Brown, Jennifer Michaud, Natalie Stevens, Michael Meehan, Camille M Sultana, Christopher Lee, Francesca Malfatti, Yanyan Zhou, Farooq Azam, Kimberly A Prather, Pieter Dorrestein, Michael D Burkart, Robert S Pomeroy | Metabolites | 2024-11-16 | Abstract | |
| Distinct pathways for evolution of enhanced receptor binding and cell entry in SARS-like bat coronaviruses. | Alexandra L Tse, Cory M Acreman, Inna Ricardo-Lax, Jacob Berrigan, Gorka Lasso, Toheeb Balogun, Fiona L Kearns, Lorenzo Casalino, Georgia L McClain, Amartya Mudry Chandran, Charlotte Lemeunier, Rommie E Amaro, Charles M Rice, Rohit K Jangra, Jason S McLellan, Kartik Chandran, Emily Happy Miller | PLoS Pathogens | 2024-11-15 | Abstract | |
| Development of an Antiviral Medicinal Plant and Natural Product Database (avMpNp Database) from Biodiversity. | Daniela Quadros de Azevedo, João Vinícius Viera Nóia, Yasmim Carla M Ribeiro, Raphael Alves Dos Reis, Paulo Henrique Otoni Ribeiro, Gustavo Almeida Moura, Pamela Mendes, Ana Beatriz Barbosa de Souza, Sofia Carpini Mermejo, Mateus Sá Magalhães Serafim, Thaís Helena Maciel Fernandes, Anthony J O'Donoghue, Alessandra C Faria Aguiar Campos, Sérgio Vale Aguiar Campos, Vinícius Gonçalves Maltarollo, Rachel Oliveira Castilho | Chemistry & Biodiversity | 2024-11-15 | Abstract | |
| Physiological cost of antibiotic resistance: Insights from a ribosome variant in bacteria. | Eun Chae Moon, Tushar Modi, Dong-Yeon D Lee, Danis Yangaliev, Jordi Garcia-Ojalvo, S Banu Ozkan, Gürol M Süel | Science Advances | 2024-11-15 | Abstract | |
| Intrinsically robust and scalable biofilm segmentation under diverse physical growth conditions. | Jian-Geng Chiou, Todd Kwang-Tao Chou, Jordi Garcia-Ojalvo, Gürol M Süel | IScience | 2024-11-13 | Abstract | |
| Author Correction: Whole-body metabolic modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimer's disease. | Filippo Martinelli, Almut Heinken, Ann-Kristin Henning, Maria A Ulmer, Tim Hensen, Antonio González, Matthias Arnold, Sanjay Asthana, Kathrin Budde, Corinne D Engelman, Mehrbod Estaki, Hans-Jörgen Grabe, Margo B Heston, Sterling Johnson, Gabi Kastenmüller, Cameron Martino, Daniel McDonald, Federico E Rey, Ingo Kilimann, Olive Peters, Xiao Wang, Eike Jakob Spruth, Anja Schneider, Klaus Fliessbach, Jens Wiltfang, Niels Hansen, WenzelGlanz, Katharina Buerger, Daniel Janowitz, Christoph Laske, Matthias H Munk, Annika Spottke, Nina Roy, Matthias Nauck, Stefan Teipel, Rob Knight, Rima F Kaddurah-Daouk, Barbara B Bendlin, Johannes Hertel, Ines Thiele | Scientific Reports | 2024-11-12 | Abstract | |
| Comparative gut microbiome research through the lens of ecology: theoretical considerations and best practices. | Samuel Degregori, Xiaolin Wang, Akhil Kommala, Noah Schulhof, Sadaf Moradi, Allison MacDonald, Kaitlin Eblen, Sophia Jukovich, Emma Smith, Emily Kelleher, Kota Suzuki, Zoey Hall, Rob Knight, Katherine Ryan Amato | Biological Reviews Of The Cambridge Philosophical Society | 2024-11-12 | Abstract | |
| Diversity of transcriptional regulatory adaptation in E. coli. | Christopher Dalldorf, Ying Hefner, Richard Szubin, Josefin Johnsen, Elsayed Mohamed, Gaoyuan Li, Jayanth Krishnan, Adam M Feist, Bernhard O Palsson, Daniel C Zielinski | Molecular Biology And Evolution | 2024-11-12 | Abstract | |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | Nature Reviews. Microbiology | 2024-11-11 | Abstract | |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | Nature Microbiology | 2024-11-11 | Abstract | |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | Npj Biodiversity | 2024-11-11 | Abstract | |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | Communications Biology | 2024-11-11 | Abstract | |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | NPJ Biofilms And Microbiomes | 2024-11-11 | Abstract | |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | Nature Communications | 2024-11-11 | Abstract | |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | MSystems | 2024-11-11 | Abstract | |
| Faecal Cytolysin is Associated With Worse Survival in Patients With Primary Sclerosing Cholangitis. | Burcin Özdirik, Hilmar Berger, Fernanda Raya Tonetti, Noemí Cabré, Nicole Treichel, Thomas Clavel, Frank Tacke, Michael Sigal, Bernd Schnabl | Liver International : Official Journal Of The International Association For The Study Of The Liver | 2024-11-06 | Abstract | |
| Multiplatform metabolomic interlaboratory study of a whole human stool candidate reference material from omnivore and vegan donors. | Abraham Kuri Cruz, Marina Amaral Alves, Thorkell Andresson, Amanda L Bayless, Kent J Bloodsworth, John A Bowden, Kevin Bullock, Meagan C Burnet, Fausto Carnevale Neto, Angelina Choy, Clary B Clish, Sneha P Couvillion, Raquel Cumeras, Lucas Dailey, Guido Dallmann, W Clay Davis, Amy A Deik, Alex M Dickens, Danijel Djukovic, Pieter C Dorrestein, Josie G Eder, Oliver Fiehn, Roberto Flores, Helen Gika, Kehau A Hagiwara, Tuan Hai Pham, James J Harynuk, Juan J Aristizabal-Henao, David W Hoyt, Focant Jean-François, Matilda Kråkström, Amit Kumar, Jennifer E Kyle, Santosh Lamichhane, Yuan Li, Seo Lin Nam, Rupasri Mandal, A Paulina de la Mata, Michael J Meehan, Thomas Meikopoulos, Thomas O Metz, Thomai Mouskeftara, Nathalie Munoz, G A Nagana Gowda, Matej Orešic, Morgan Panitchpakdi, Stefanuto Pierre-Hugues, Daniel Raftery, Blake Rushing, Tracey Schock, Harold Seifried, Stephanie Servetas, Tong Shen, Susan Sumner, Kieran S Tarazona Carrillo, Dejong Thibaut, Jesse B Trejo, Lieven Van Meulebroek, Lynn Vanhaecke, Christina Virgiliou, Kelly C Weldon, David S Wishart, Lu Zhang, Jiamin Zheng, Sandra Da Silva | Metabolomics : Official Journal Of The Metabolomic Society | 2024-11-04 | Abstract | |
| Digital PCR in Virology: Current Applications and Future Perspectives. | David Gleerup, Wim Trypsteen, Stephanie I Fraley, Ward De Spiegelaere | Molecular Diagnosis & Therapy | 2024-11-02 | Abstract | |
| Microbiome divergence of marine gastropod species separated by the Isthmus of Panama. | Alexander T Neu, Mark E Torchin, Eric E Allen, Kaustuv Roy | Applied And Environmental Microbiology | 2024-10-31 | Abstract | |
| Gut and oral microbial compositional differences in women with breast cancer, women with ductal carcinoma , and healthy women. | Emma McCune, Anukriti Sharma, Breanna Johnson, Tess O'Meara, Sarah Theiner, Maribel Campos, Diane Heditsian, Susie Brain, Jack A Gilbert, Laura Esserman, Michael J Campbell | MSystems | 2024-10-29 | Abstract | |
| Disparities in steatosis prevalence in the United States by Race or Ethnicity according to the 2023 criteria. | Luis Antonio Díaz, Jeffrey V Lazarus, Eduardo Fuentes-López, Francisco Idalsoaga, Gustavo Ayares, Hailemichael Desaleng, Pojsakorn Danpanichkul, Thomas G Cotter, Winston Dunn, Francisco Barrera, Karn Wijarnpreecha, Mazen Noureddin, Naim Alkhouri, Ashwani K Singal, Robert J Wong, Zobair M Younossi, Mary E Rinella, Patrick S Kamath, Ramon Bataller, Rohit Loomba, Marco Arrese, Juan Pablo Arab | Communications Medicine | 2024-10-29 | Abstract | |
| Topical ivermectin treatment of rosacea changes the bacterial microbiome of the skin. | Teruaki Nakatsuji, Joyce Y Cheng, Anna Butcher, Faiza Shafiq, Olive Osuoji, Richard L Gallo, Tissa R Hata | The Journal Of Investigative Dermatology | 2024-10-29 | Abstract | |
| Associations Between Gut Microbiota Diversity and a Host Fitness Proxy in a Naturalistic Experiment Using Threespine Stickleback Fish. | Andreas Härer, Ken A Thompson, Dolph Schluter, Diana J Rennison | Molecular Ecology | 2024-10-28 | Abstract | |
| An integrated view of the structure and function of the human 4D nucleome. | , Job Dekker, Betul Akgol Oksuz, Yang Zhang, Ye Wang, Miriam K Minsk, Shuzhen Kuang, Liyan Yang, Johan H Gibcus, Nils Krietenstein, Oliver J Rando, Jie Xu, Derek H Janssens, Steven Henikoff, Alexander Kukalev, Andréa Willemin, Warren Winick-Ng, Rieke Kempfer, Ana Pombo, Miao Yu, Pradeep Kumar, Liguo Zhang, Andrew S Belmont, Takayo Sasaki, Tom van Schaik, Laura Brueckner, Daan Peric-Hupkes, Bas van Steensel, Ping Wang, Haoxi Chai, Minji Kim, Yijun Ruan, Ran Zhang, Sofia A Quinodoz, Prashant Bhat, Mitchell Guttman, Wenxin Zhao, Shu Chien, Yuan Liu, Sergey V Venev, Dariusz Plewczynski, Ibai Irastorza Azcarate, Dominik Szabó, Christoph J Thieme, Teresa Szczepińska, Mateusz Chiliński, Kaustav Sengupta, Mattia Conte, Andrea Esposito, Alex Abraham, Ruochi Zhang, Yuchuan Wang, Xingzhao Wen, Qiuyang Wu, Yang Yang, Jie Liu, Lorenzo Boninsegna, Asli Yildirim, Yuxiang Zhan, Andrea Maria Chiariello, Simona Bianco, Lindsay Lee, Ming Hu, Yun Li, R Jordan Barnett, Ashley L Cook, Daniel J Emerson, Claire Marchal, Peiyao Zhao, Peter Park, Burak H Alver, Andrew Schroeder, Rahi Navelkar, Clara Bakker, William Ronchetti, Shannon Ehmsen, Alexander Veit, Nils Gehlenborg, Ting Wang, Daofeng Li, Xiaotao Wang, Mario Nicodemi, Bing Ren, Sheng Zhong, Jennifer E Phillips-Cremins, David M Gilbert, Katherine S Pollard, Frank Alber, Jian Ma, William S Noble, Feng Yue | BioRxiv : The Preprint Server For Biology | 2024-10-27 | Abstract | |
| Staphylococcus felis C4 exhibits in vitro antimicrobial activity against methicillin-resistant Staphylococcus pseudintermedius in a novel canine skin explant model. | Mayane Faccin, Alan M O'Neill, Sara D Lawhon, Kate A Worthing, Dominique J Wiener, Richard L Gallo, Aline Rodrigues Hoffmann | Veterinary Dermatology | 2024-10-25 | Abstract | |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | The ISME Journal | 2024-10-25 | Abstract | |
| iModulonMiner and PyModulon: Software for unsupervised mining of gene expression compendia. | Anand V Sastry, Yuan Yuan, Saugat Poudel, Kevin Rychel, Reo Yoo, Cameron R Lamoureux, Gaoyuan Li, Joshua T Burrows, Siddharth Chauhan, Zachary B Haiman, Tahani Al Bulushi, Yara Seif, Bernhard O Palsson, Daniel C Zielinski | PLoS Computational Biology | 2024-10-23 | Abstract | |
| Cardiorespiratory Fitness and Sleep, but not Physical Activity, are Associated with Functional Connectivity in Older Adults. | David Wing, Bart Roelands, Julie Loebach Wetherell, Jeanne F Nichols, Romain Meeusen, Job G Godino, Joshua S Shimony, Abraham Z Snyder, Tomoyuki Nishino, Ginger E Nicol, Guy Nagels, Lisa T Eyler, Eric J Lenze | Sports Medicine - Open | 2024-10-19 | Abstract | |
| Annotating full-scan MS data using tandem MS libraries. | Shipei Xing, Vincent Charron-Lamoureux, Yasin El Abiead, Pieter C Dorrestein | BioRxiv : The Preprint Server For Biology | 2024-10-17 | Abstract | |
| Two-Dimensional Liquid Chromatography Tandem Mass Spectrometry Untangles the Deep Metabolome of Marine Dissolved Organic Matter. | Stilianos Papadopoulos Lambidis, Tilman Schramm, Karoline Steuer-Lodd, Shane Farrell, Paolo Stincone, Robin Schmid, Irina Koester, Ralph Torres, Thorsten Dittmar, Lihini Aluwihare, Carsten Simon, Daniel Petras | Environmental Science & Technology | 2024-10-16 | Abstract | |
| Contrasting alpha, beta, and gamma diversity in the littoral zones of mountain lakes: effects of habitat size and within-lake community structuring on bacterial biogeography. | Andreas Härer, Joshua Dominguez, Jonathan B Shurin, Diana J Rennison | FEMS Microbiology Ecology | 2024-10-14 | Abstract | |
| Association Between Dietary Patterns and Subgingival Microbiota: Results From the Oral Infections, Glucose Intolerance, and Insulin Resistance Study (ORIGINS). | Rebecca L Molinsky, Abigail J Johnson, Lisa Marotz, Sumith Roy, Bruno Bohn, Charlene E Goh, Ching-Yuan Chen, Bruce Paster, Rob Knight, Jeanine Genkinger, Panos N Papapanou, David R Jacobs, Ryan T Demmer | Journal Of Clinical Periodontology | 2024-10-12 | Abstract | |
| Differential gut microbiota composition in β-Thalassemia patients and its correlation with iron overload. | Poochit Nonejuie, Alisa Wilantho, Daniel McDonald, Htut Htut Htoo, Jenjira Chalerm, Anupriya Tripathi, Chumpol Ngamphiw, Sissades Tongsima, Rob Knight, Kittiphong Paiboonsukwong, Suthat Fucharoen | Scientific Reports | 2024-10-11 | Abstract | |
| Bioelectronic tools for understanding the universal language of electrical signaling across species and kingdoms. | Shivani Shukla, Colin J Comerci, Gürol M Süel, Zeinab Jahed | Biosensors & Bioelectronics | 2024-10-11 | Abstract | |
| Advancing stem cell technologies for conservation of wildlife biodiversity. | Ashlee M Hutchinson, Ruth Appeltant, Tom Burdon, Qiuye Bao, Rhishikesh Bargaje, Andrea Bodnar, Stuart Chambers, Pierre Comizzoli, Laura Cook, Yoshinori Endo, Bob Harman, Katsuhiko Hayashi, Thomas Hildebrandt, Marisa L Korody, Uma Lakshmipathy, Jeanne F Loring, Clara Munger, Alex H M Ng, Ben Novak, Manabu Onuma, Sara Ord, Monique Paris, Andrew J Pask, Francisco Pelegri, Martin Pera, Ryan Phelan, Benyamin Rosental, Oliver A Ryder, Woranop Sukparangsi, Gareth Sullivan, Nicole Liling Tay, Nikki Traylor-Knowles, Shawn Walker, Antonia Weberling, Deanne J Whitworth, Suzannah A Williams, Jessye Wojtusik, Jun Wu, Qi-Long Ying, Thomas P Zwaka, Timo N Kohler | Development (Cambridge, England) | 2024-10-09 | Abstract | |
| The intricate pathogenicity of group a : A comprehensive update. | Helena Bergsten, Victor Nizet | Virulence | 2024-10-07 | Abstract | |
| A Three-year Longitudinal Assessment of Pseudomonas aeruginosa Antibiotic Susceptibility in Children With Cystic Fibrosis in the Era of Cystic Fibrosis Transmembrane Conductance Regulator Modulator Therapy. | Dayna Stout, John S Bradley, Yaron Fireizen, Kathryn Akong, Nanda Ramchandar | The Pediatric Infectious Disease Journal | 2024-10-04 | Abstract | |
| Pan-genome-scale metabolic modeling of reveals functionally distinct groups. | Maxwell Neal, William Brakewood, Michael Betenbaugh, Karsten Zengler | MSystems | 2024-10-04 | Abstract | |
| Diversity of human salivary heparan sulfate. | Charlotte B Spliid, Sanjay Mehta, Mark M Fuster, Cameron Martino, Claire L Morris, Nharae Lee, Ivan Florentino, Khang Tong, Lin Liu, Gail Ackermann, Rob Knight, Jeffrey D Esko, Tatiana Hurtado De Mendoza | Glycobiology | 2024-10-03 | Abstract | |
| Environment-independent distribution of mutational effects emerges from microscopic epistasis. | Sarah M Ardell, Alena Martsul, Milo S Johnson, Sergey Kryazhimskiy | Science (New York, N.Y.) | 2024-10-03 | Abstract | |
| Social behaviour mediates the microbiome response to antibiotic treatment in a wild mammal. | Bianca R P Brown, Allison E Williams, Kate A Sabey, Aaron Onserio, John Ewoi, Se Jin Song, Rob Knight, Vanessa O Ezenwa | Proceedings. Biological Sciences | 2024-10-02 | Abstract | |
| Study of impacts of two types of cellular aging on the yeast bud morphogenesis. | Kevin Tsai, Zhen Zhou, Jiadong Yang, Zhiliang Xu, Shixin Xu, Roya Zandi, Nan Hao, Weitao Chen, Mark Alber | PLoS Computational Biology | 2024-09-30 | Abstract | |
| Receptor and metabolic insights on the ability of caffeine to prevent alcohol-induced stimulation of mesolimbic dopamine transmission. | Valentina Bassareo, Riccardo Maccioni, Giuseppe Talani, Simone Zuffa, Yasin El Abiead, Irene Lorrai, Tomoya Kawamura, Sofia Pantis, Roberta Puliga, Romina Vargiu, Daniele Lecca, Paolo Enrico, Alessandra Peana, Laura Dazzi, Pieter C Dorrestein, Pietro Paolo Sanna, Enrico Sanna, Elio Acquas | Translational Psychiatry | 2024-09-28 | Abstract | |
| SpLitteR: diploid genome assembly using TELL-Seq linked-reads and assembly graphs. | Ivan Tolstoganov, Zhoutao Chen, Pavel Pevzner, Anton Korobeynikov | PeerJ | 2024-09-27 | Abstract | |
| Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data. | Abzer K Pakkir Shah, Axel Walter, Filip Ottosson, Francesco Russo, Marcelo Navarro-Diaz, Judith Boldt, Jarmo-Charles J Kalinski, Eftychia Eva Kontou, James Elofson, Alexandros Polyzois, Carolina González-Marín, Shane Farrell, Marie R Aggerbeck, Thapanee Pruksatrakul, Nathan Chan, Yunshu Wang, Magdalena Pöchhacker, Corinna Brungs, Beatriz Cámara, Andrés Mauricio Caraballo-Rodríguez, Andres Cumsille, Fernanda de Oliveira, Kai Dührkop, Yasin El Abiead, Christian Geibel, Lana G Graves, Martin Hansen, Steffen Heuckeroth, Simon Knoblauch, Anastasiia Kostenko, Mirte C M Kuijpers, Kevin Mildau, Stilianos Papadopoulos Lambidis, Paulo Wender Portal Gomes, Tilman Schramm, Karoline Steuer-Lodd, Paolo Stincone, Sibgha Tayyab, Giovanni Andrea Vitale, Berenike C Wagner, Shipei Xing, Marquis T Yazzie, Simone Zuffa, Martinus de Kruijff, Christine Beemelmanns, Hannes Link, Christoph Mayer, Justin J J van der Hooft, Tito Damiani, Tomáš Pluskal, Pieter Dorrestein, Jan Stanstrup, Robin Schmid, Mingxun Wang, Allegra Aron, Madeleine Ernst, Daniel Petras | Nature Protocols | 2024-09-20 | Abstract | |
| A living organoid biobank of patients with Crohn's disease reveals molecular subtypes for personalized therapeutics. | Courtney Tindle, Ayden G Fonseca, Sahar Taheri, Gajanan D Katkar, Jasper Lee, Priti Maity, Ibrahim M Sayed, Stella-Rita Ibeawuchi, Eleadah Vidales, Rama F Pranadinata, Mackenzie Fuller, Dominik L Stec, Mahitha Shree Anandachar, Kevin Perry, Helen N Le, Jason Ear, Brigid S Boland, William J Sandborn, Debashis Sahoo, Soumita Das, Pradipta Ghosh | Cell Reports. Medicine | 2024-09-20 | Abstract | |
| Genome-scale models in human metabologenomics. | Adil Mardinoglu, Bernhard Ø Palsson | Nature Reviews. Genetics | 2024-09-19 | Abstract | |
| CyuR is a dual regulator for L-cysteine dependent antimicrobial resistance in Escherichia coli. | Irina A Rodionova, Hyun Gyu Lim, Ye Gao, Dmitry A Rodionov, Ying Hutchison, Richard Szubin, Christopher Dalldorf, Jonathan Monk, Bernhard O Palsson | Communications Biology | 2024-09-17 | Abstract | |
| Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies. | Caitriona Brennan, Pedro Belda-Ferre, Simone Zuffa, Vincent Charron-Lamoureux, Ipsita Mohanty, Gail Ackermann, Celeste Allaband, Madison Ambre, Tara Boyer, MacKenzie Bryant, Kalen Cantrell, Antonio Gonzalez, Daniel McDonald, Rodolfo A Salido, Se Jin Song, Gillian Wright, Pieter C Dorrestein, Rob Knight | MSystems | 2024-09-16 | Abstract | |
| Novel weapon-aided plant protection in the underground battlefield. | Seonghan Jang, Jin-Soo Son, Eric A Schmelz, Choong-Min Ryu | Plant Signaling & Behavior | 2024-09-16 | Abstract | |
| A single diiron enzyme catalyses the oxidative rearrangement of tryptophan to indole nitrile. | Sanjoy Adak, Naike Ye, Logan A Calderone, Meng Duan, Wilson Lubeck, Rebecca J B Schäfer, April L Lukowski, K N Houk, Maria-Eirini Pandelia, Catherine L Drennan, Bradley S Moore | Nature Chemistry | 2024-09-16 | Abstract | |
| Organic anion transporters in remote sensing and organ crosstalk. | Jeffry C Granados, Sanjay K Nigam | Pharmacology & Therapeutics | 2024-09-14 | Abstract | |
| Machine learning reveals the transcriptional regulatory network and circadian dynamics of PCC 7942. | Yuan Yuan, Tahani Al Bulushi, Anand V Sastry, Cigdem Sancar, Richard Szubin, Susan S Golden, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2024-09-13 | Abstract | |
| Machine-Learning Analysis of Streptomyces coelicolor Transcriptomes Reveals a Transcription Regulatory Network Encompassing Biosynthetic Gene Clusters. | Yongjae Lee, Donghui Choe, Bernhard O Palsson, Byung-Kwan Cho | Advanced Science (Weinheim, Baden-Wurttemberg, Germany) | 2024-09-12 | Abstract | |
| Protocol to establish an accelerated murine model for Helicobacter-induced gastric cancer. | Prerna Bali, Ivonne Lozano-Pope, Jonathan Hernandez, Monica V Estrada, Christopher Benner, Marygorret Obonyo | STAR Protocols | 2024-09-11 | Abstract | |
| Y and Mitochondrial Chromosomes in the Heterogeneous Stock Rat Population. | Faith Okamoto, Apurva S Chitre, Thiago Missfeldt Sanches, Denghui Chen, Daniel Munro, Allegra T Aron, Angela Beeson, Hannah V Bimschleger, Maya Eid, Angel G Garcia Martinez, Wenyan Han, Katie Holl, Tyler Jackson, Benjamin B Johnson, Christopher P King, Brittany N Kuhn, Alexander C Lamparelli, Alesa H Netzley, Khai-Minh H Nguyen, Beverly F Peng, Jordan A Tripi, Tengfei Wang, Kendra S Ziegler, Douglas J Adams, Amelie Baud, Lieselot L G Carrette, Hao Chen, Giordano de Guglielmo, Pieter Dorrestein, Olivier George, Keita Ishiwari, Monica M Jablonski, Thomas C Jhou, Marsida Kallupi, Rob Knight, Paul J Meyer, Leah C Solberg Woods, Oksana Polesskaya, Abraham A Palmer | G3 (Bethesda, Md.) | 2024-09-09 | Abstract | |
| Distinct mucosal endotypes as initiators and drivers of rheumatoid arthritis. | V Michael Holers, Kristen M Demoruelle, Jane H Buckner, Eddie A James, Gary S Firestein, William H Robinson, Allen C Steere, Fan Zhang, Jill M Norris, Kristine A Kuhn, Kevin D Deane | Nature Reviews. Rheumatology | 2024-09-09 | Abstract | |
| Plasma cell-free RNA signatures of inflammatory syndromes in children. | Conor J Loy, Venice Servellita, Alicia Sotomayor-Gonzalez, Andrew Bliss, Joan S Lenz, Emma Belcher, Will Suslovic, Jenny Nguyen, Meagan E Williams, Miriam Oseguera, Michael A Gardiner, , , Jong-Ha Choi, Hui-Mien Hsiao, Hao Wang, Jihoon Kim, Chisato Shimizu, Adriana H Tremoulet, Meghan Delaney, Roberta L DeBiasi, Christina A Rostad, Jane C Burns, Charles Y Chiu, Iwijn De Vlaminck | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2024-09-06 | Abstract | |
| Human milk variation is shaped by maternal genetics and impacts the infant gut microbiome. | Kelsey E Johnson, Timothy Heisel, Mattea Allert, Annalee Fürst, Nikhila Yerabandi, Dan Knights, Katherine M Jacobs, Eric F Lock, Lars Bode, David A Fields, Michael C Rudolph, Cheryl A Gale, Frank W Albert, Ellen W Demerath, Ran Blekhman | Cell Genomics | 2024-09-06 | Abstract | |
| Hepatic immune regulation and sex disparities. | Patrizia Burra, Alberto Zanetto, Bernd Schnabl, Thomas Reiberger, Aldo J Montano-Loza, Rosanna Asselta, Tom Hemming Karlsen, Frank Tacke | Nature Reviews. Gastroenterology & Hepatology | 2024-09-05 | Abstract | |
| Gut Microbiome Compositional and Functional Features Associate with Alzheimer's Disease Pathology. | Jea Woo Kang, Lora A Khatib, Margo B Heston, Amanda H Dilmore, Jennifer S Labus, Yuetiva Deming, Leyla Schimmel, Colette Blach, Daniel McDonald, Antonio Gonzalez, MacKenzie Bryant, Karenina Sanders, Ara Schwartz, Tyler K Ulland, Sterling C Johnson, Sanjay Asthana, Cynthia M Carlsson, Nathaniel A Chin, Kaj Blennow, Henrik Zetterberg, Federico E Rey, , Rima Kaddurah-Daouk, Rob Knight, Barbara B Bendlin | MedRxiv : The Preprint Server For Health Sciences | 2024-09-05 | Abstract | |
| Intratumoral or Subcutaneous MK-2118, a Noncyclic Dinucleotide STING Agonist, with or without Pembrolizumab, for Advanced or Metastatic Solid Tumors or Lymphomas. | Jason J Luke, Randy F Sweis, J Randolph Hecht, Reva Schneider, Mark N Stein, Talia Golan, Timothy A Yap, Anuradha Khilnani, Mo Huang, Runchen Zhao, Thomas Jemielita, Sandip Pravin Patel | Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research | 2024-09-04 | Abstract | |
| Pharmacokinetics, Safety and Tolerability of Single-dose or Multiple-dose Cefiderocol in Hospitalized Pediatric Patients Three Months to Less Than Eighteen Years Old With Infections Treated With Standard-of-care Antibiotics in the PEDI-CEFI Phase 2 Study. | John S Bradley, Elaine Orchiston, Simon Portsmouth, Mari Ariyasu, Takamichi Baba, Takayuki Katsube, Oluwaseun Makinde | The Pediatric Infectious Disease Journal | 2024-09-04 | Abstract | |
| Human milk oligosaccharides are associated with maternal genetics and respiratory health of human milk-fed children. | Amirthagowri Ambalavanan, Le Chang, Jihoon Choi, Yang Zhang, Sara A Stickley, Zhi Y Fang, Kozeta Miliku, Bianca Robertson, Chloe Yonemitsu, Stuart E Turvey, Piushkumar J Mandhane, Elinor Simons, Theo J Moraes, Sonia S Anand, Guillaume Paré, Janet E Williams, Brenda M Murdoch, Gloria E Otoo, Samwel Mbugua, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Debela K Gindola, Juan M Rodriguez, Rossina G Pareja, Daniel W Sellen, Sophie E Moore, Andrew M Prentice, James A Foster, Linda J Kvist, Holly L Neibergs, Mark A McGuire, Michelle K McGuire, Courtney L Meehan, Malcolm R Sears, Padmaja Subbarao, Meghan B Azad, Lars Bode, Qingling Duan | Nature Communications | 2024-09-04 | Abstract | |
| Spatial chemistry of citrus reveals molecules bactericidal to Candidatus Liberibacter asiaticus. | Alexander A Aksenov, Alex Blacutt, Nichole Ginnan, Philippe E Rolshausen, Alexey V Melnik, Ali Lotfi, Emily C Gentry, Manikandan Ramasamy, Cristal Zuniga, Karsten Zengler, Kranthi K Mandadi, Pieter C Dorrestein, M Caroline Roper | Scientific Reports | 2024-09-02 | Abstract | |
| A Population-Based Epidemiologic Study of Symptomatic SARS-CoV-2 Infections and Fatalities in Brazilian Children over 3 Years. | Eduardo A Oliveira, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Cristiane S Dias, Lilian M Diniz, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Clara C Pinhati, Stella C Galante, Isadora Y Veloso, Fernanda N Duelis, Hercílio Martelli-Júnior | The Journal Of Pediatrics | 2024-09-02 | Abstract | |
| Temporal and Spatial Dynamics of Synechococcus Clade II and Other Microbes in the Eutrophic Subtropical San Diego Bay. | Katie J Harding, Maitreyi Nagarkar, Maggie Wang, Kailey Ramsing, Niv Anidjar, Sarah Giddings, Bianca Brahamsha, Brian Palenik | Environmental Microbiology | 2024-09-02 | Abstract | |
| M proteins of group A Streptococcus bind hyaluronic acid via arginine-arginine/serine-arginine motifs. | Tahnee B-D McEwan, David M P De Oliveira, Emily K Stares, Lauren E Hartley-Tassell, Christopher J Day, Emma-Jayne Proctor, Victor Nizet, Mark J Walker, Michael P Jennings, Ronald Sluyter, Martina L Sanderson-Smith | FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology | 2024-08-31 | Abstract | |
| Statistical Challenges When Analyzing SARS-CoV-2 RNA Measurements Below the Assay Limit of Quantification in COVID-19 Clinical Trials. | Carlee B Moser, Kara W Chew, Mark J Giganti, Jonathan Z Li, Evgenia Aga, Justin Ritz, Alexander L Greninger, Arzhang Cyrus Javan, Rachel Bender Ignacio, Eric S Daar, David A Wohl, Judith S Currier, Joseph J Eron, Davey M Smith, Michael D Hughes, | The Journal Of Infectious Diseases | 2024-08-31 | Abstract | |
| Variant-Specific Viral Kinetics in Acute COVID-19. | Ruy M Ribeiro, Manish C Choudhary, Rinki Deo, Mark J Giganti, Carlee Moser, Justin Ritz, Alexander L Greninger, James Regan, James P Flynn, David A Wohl, Judith S Currier, Joseph J Eron, Michael D Hughes, Davey M Smith, Kara W Chew, Eric S Daar, Alan S Perelson, Jonathan Z Li, | The Journal Of Infectious Diseases | 2024-08-31 | Abstract | |
| Immune Status and SARS-CoV-2 Viral Dynamics. | Yijia Li, Carlee Moser, Evgenia Aga, Judith S Currier, David A Wohl, Eric S Daar, Justin Ritz, Alexander L Greninger, Scott Sieg, Urvi M Parikh, Robert W Coombs, Michael D Hughes, Joseph J Eron, Davey M Smith, Kara W Chew, Jonathan Z Li, | The Journal Of Infectious Diseases | 2024-08-31 | Abstract | |
| Association Between Anterior Nasal and Plasma SARS-CoV-2 RNA Levels and Hospitalization or Death in Nonhospitalized Adults With Mild-to-Moderate COVID-19. | Mark J Giganti, Kara W Chew, Joseph J Eron, Jonathan Z Li, Mauricio Pinilla, Carlee Moser, Arzhang Cyrus Javan, William A Fischer, Paul Klekotka, David Margolis, David Alain Wohl, Robert W Coombs, Eric S Daar, Davey M Smith, Judith S Currier, Michael D Hughes, | The Journal Of Infectious Diseases | 2024-08-31 | Abstract | |
| Diagnosis and mitigation of the systemic impact of genome reduction in DGF-298. | Antoine Champie, Jean-Christophe Lachance, Anand Sastry, Dominick Matteau, Colton J Lloyd, Frédéric Grenier, Cameron R Lamoureux, Simon Jeanneau, Adam M Feist, Pierre-Étienne Jacques, Bernhard O Palsson, Sébastien Rodrigue | MBio | 2024-08-29 | Abstract | |
| Host-associated microbes mitigate the negative impacts of aquatic pollution. | Rachel E Diner, Sarah M Allard, Jack A Gilbert | MSystems | 2024-08-29 | Abstract | |
| CCL28 modulates neutrophil responses during infection with mucosal pathogens. | Gregory T Walker, Araceli Perez-Lopez, Steven Silva, Michael H Lee, Elisabet Bjånes, Nicholas Dillon, Stephanie L Brandt, Romana R Gerner, Karine Melchior, Grant J Norton, Felix A Argueta, Frenchesca Dela Pena, Lauren Park, Victor A Sosa-Hernandez, Rodrigo Cervantes-Diaz, Sandra Romero-Ramirez, Monica Cartelle Gestal, Jose L Maravillas-Montero, Sean-Paul Nuccio, Victor Nizet, Manuela Raffatellu | ELife | 2024-08-28 | Abstract | |
| Antibody Levels From High-Throughput Variant-Specific SARS-CoV-2 Anti-Spike Immunoglobulin G and Angiotensin-Converting Enzyme 2 Neutralization Assays Correlate With COVID-19 Infection Risk in a Large Population. | Marni B Jacobs, Alex E Clark, Nicole H Goldhaber, Holly D Valentine, Andrea Rivera, Toan Ngo, Tom Barber, Jacqueline Holmes, Brittany Manfredi, Aaron F Garretson, William Bray, Rob Knight, Christopher A Longhurst, Aaron F Carlin, Peter De Hoff, Louise C Laurent | The Journal Of Infectious Diseases | 2024-08-28 | Abstract | |
| Simulation-driven design of stabilized SARS-CoV-2 spike S2 immunogens. | Xandra Nuqui, Lorenzo Casalino, Ling Zhou, Mohamed Shehata, Albert Wang, Alexandra L Tse, Anupam A Ojha, Fiona L Kearns, Mia A Rosenfeld, Emily Happy Miller, Cory M Acreman, Surl-Hee Ahn, Kartik Chandran, Jason S McLellan, Rommie E Amaro | Nature Communications | 2024-08-27 | Abstract | |
| Maternal immune cell gene expression associates with maternal gut microbiome, milk composition and infant gut microbiome. | Manoj Gurung, Bharath Kumar Mulakala, Brent Thomas Schlegel, Dhivyaa Rajasundaram, Kartik Shankar, Lars Bode, Meghan L Ruebel, Clark Sims, Audrey Martinez, Aline Andres, Laxmi Yeruva | Clinical Nutrition ESPEN | 2024-08-27 | Abstract | |
| Oral Supplementation with the Short-Chain Fatty Acid Acetate Ameliorates Age-Related Arterial Dysfunction in Mice. | Abigail G Longtine, Nathan T Greenberg, Antonio Gonzalez, Alexandra Lindquist, Nicholas S VanDongen, Sophia A Mahoney, Gibraan Rahman, Zachary S Clayton, Brian P Ziemba, Katelyn R Ludwig, Michael E Widlansky, Rob Knight, Douglas R Seals, Vienna E Brunt | Aging Biology | 2024-08-27 | Abstract | |
| Fecal gelatinase does not predict mortality in patients with alcohol-associated hepatitis. | Yongqiang Yang, Phillipp Hartmann, Bernd Schnabl | Microbial Cell (Graz, Austria) | 2024-08-26 | Abstract | |
| Towards Understanding Tumour Colonisation by Probiotic Bacterium Nissle 1917. | Georgette A Radford, Laura Vrbanac, Rebekah T de Nys, Daniel L Worthley, Josephine A Wright, Jeff Hasty, Susan L Woods | Cancers | 2024-08-26 | Abstract | |
| Human milk microbiota, oligosaccharide profiles, and infant gut microbiome in preterm infants diagnosed with necrotizing enterocolitis. | Andrea C Masi, Lauren C Beck, John D Perry, Claire L Granger, Alice Hiorns, Gregory R Young, Lars Bode, Nicholas D Embleton, Janet E Berrington, Christopher J Stewart | Cell Reports. Medicine | 2024-08-23 | Abstract | |
| Impact of SARS-CoV-2 Resistance to Antiviral Monoclonal Antibody Therapy on Neutralizing Antibody Response. | Marc-Kendy Paul, Manish C Choudhary, Amy L Heaps, Rinki Deo, Daniela Moisi, Kelley C Gordon, John W Mellors, Carlee Moser, Paul Klekotka, Alan Landay, Judith S Currier, Joseph J Eron, Kara W Chew, Davey M Smith, Scott F Sieg, Urvi M Parikh, Jonathan Z Li, | Pathogens & Immunity | 2024-08-21 | Abstract | |
| Modulating bacterial function utilizing A knowledge base of transcriptional regulatory modules. | Jongoh Shin, Daniel C Zielinski, Bernhard O Palsson | Nucleic Acids Research | 2024-08-19 | Abstract | |
| Biosignature Molecules Accumulate and Persist in Evaporitic Brines: Implications for Planetary Exploration. | Chad Pozarycki, Kenneth M Seaton, Emily C Vincent, Carlie Novak Sanders, Nickie Nuñez, Mariah Castillo, Ellery Ingall, Benjamin Klempay, Alexandra Pontefract, Luke A Fisher, Emily R Paris, Steffen Buessecker, Nikolas B Alansson, Christopher E Carr, Peter T Doran, Jeff S Bowman, Britney E Schmidt, Amanda M Stockton | Astrobiology | 2024-08-19 | Abstract | |
| A genome-scale metabolic model of a globally disseminated hyperinvasive M1 strain of . | Yujiro Hirose, Daniel C Zielinski, Saugat Poudel, Kevin Rychel, Jonathon L Baker, Yoshihiro Toya, Masaya Yamaguchi, Almut Heinken, Ines Thiele, Shigetada Kawabata, Bernhard O Palsson, Victor Nizet | MSystems | 2024-08-19 | Abstract | |
| Effect of Topical Microencapsulated Benzoyl Peroxide on the Skin Microbiome in Rosacea: A Randomized, Double-Blind, Crossover, Vehicle-Controlled Clinical Trial. | Yvonne Nong, Jeffrey Sugarman, Jean Philippe York, Ofra Levy-Hacham, Dawnica Nadora, Rinat Mizrahi, Aidan Galati, Richard L Gallo, Raja K Sivamani | The Journal Of Clinical And Aesthetic Dermatology | 2024-08-16 | Abstract | |
| Longitudinal assessment of the impact of COVID-19 infection on mask-wearing behaviors. | Danielle Pham, Angel Lomeli, Nicole H Goldhaber, Holly D Valentine, Rob Knight, Christopher A Longhurst, Louise C Laurent, Marni B Jacobs | BMC Public Health | 2024-08-16 | Abstract | |
| Autism-associated CHD8 controls reactive gliosis and neuroinflammation via remodeling chromatin in astrocytes. | Platon Megagiannis, Yuan Mei, Rachel E Yan, Lin Yuan, Jonathan J Wilde, Hailey Eckersberg, Rahul Suresh, Xinzhu Tan, Hong Chen, W Todd Farmer, Kuwook Cha, Phuong Uyen Le, Helene Catoire, Daniel Rochefort, Tony Kwan, Brian A Yee, Patrick Dion, Arjun Krishnaswamy, Jean-Francois Cloutier, Stefano Stifani, Kevin Petrecca, Gene W Yeo, Keith K Murai, Guoping Feng, Guy A Rouleau, Trey Ideker, Neville E Sanjana, Yang Zhou | Cell Reports | 2024-08-16 | Abstract | |
| Epidemiology of Pediatric Astrovirus Gastroenteritis in a Nicaraguan Birth Cohort. | Rebecca J Rubinstein, Lester Gutiérrez, Christian Toval-Ruíz, Kelli Hammond, Lars Bode, Jan Vinjé, Samuel Vilchez, Sylvia Becker-Dreps, Filemón Bucardo, Nadja A Vielot, Yaoska Reyes | Open Forum Infectious Diseases | 2024-08-16 | Abstract | |
| Associations between gut microbiota and incident fractures in the FINRISK cohort. | Louise Grahnemo, Oleg Kambur, Leo Lahti, Pekka Jousilahti, Teemu Niiranen, Rob Knight, Veikko Salomaa, Aki S Havulinna, Claes Ohlsson | NPJ Biofilms And Microbiomes | 2024-08-14 | Abstract | |
| The impact of breastfeeding on the preterm infant's microbiome and metabolome: a pilot study. | Keriann Schulkers Escalante, Shiyu S Bai-Tong, Sarah M Allard, Gertrude Ecklu-Mensah, Concepcion Sanchez, Se Jin Song, Jack Gilbert, Lars Bode, Pieter Dorrestein, Rob Knight, David J Gonzalez, Sydney A Leibel, Sandra L Leibel | Pediatric Research | 2024-08-13 | Abstract | |
| Gut mycobiome alterations and implications for liver diseases. | Suling Zeng, Bernd Schnabl | PLoS Pathogens | 2024-08-08 | Abstract | |
| Linoleoyl-lysophosphatidylcholine suppresses immune-related adverse events due to immune checkpoint blockade. | Ian T Mathews, Priyanka Saminathan, Mir Henglin, Mingyue Liu, Namratha Nadig, Camille Fang, Kysha Mercader, Serena J Chee, Allison M Campbell, Abhijit A Patel, Saumya Tiwari, Jeramie D Watrous, Karthik Ramesh, Martina Dicker, Khoi Dao, Melissa A Meyer, Pekka Jousilahti, Aki S Havulinna, Teemu Niiranen, Veikko Salomaa, Leo A B Joosten, Mihai G Netea, Pan Zheng, Mitchell Kronenberg, Sandip Pravin Patel, J Silvio Gutkind, Christian Ottensmeier, Tao Long, Susan M Kaech, Catherine C Hedrick, Susan Cheng, Mohit Jain, Sonia Sharma | MedRxiv : The Preprint Server For Health Sciences | 2024-08-08 | Abstract | |
| The Central Roles of Keratinocytes in Coordinating Skin Immunity. | Jared Simmons, Richard L Gallo | The Journal Of Investigative Dermatology | 2024-08-07 | Abstract | |
| Social and environmental predictors of gut microbiome age in wild baboons. | Mauna R Dasari, Kimberly E Roche, David Jansen, Jordan Anderson, Susan C Alberts, Jenny Tung, Jack A Gilbert, Ran Blekhman, Sayan Mukherjee, Elizabeth A Archie | BioRxiv : The Preprint Server For Biology | 2024-08-04 | Abstract | |
| Phage resistance mutations affecting the bacterial cell surface increase susceptibility to fungi in a model cheese community. | Tara C J Spencer-Drakes, Angel Sarabia, Gary Heussler, Emily C Pierce, Manon Morin, Steven Villareal, Rachel J Dutton | ISME Communications | 2024-08-02 | Abstract | |
| Immunological memory diversity in the human upper airway. | Sydney I Ramirez, Farhoud Faraji, L Benjamin Hills, Paul G Lopez, Benjamin Goodwin, Hannah D Stacey, Henry J Sutton, Kathryn M Hastie, Erica Ollmann Saphire, Hyun Jik Kim, Sara Mashoof, Carol H Yan, Adam S DeConde, Gina Levi, Shane Crotty | Nature | 2024-07-31 | Abstract | |
| Complete sequencing of ape genomes. | DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A Logsdon, Steven J Solar, Dmitry Antipov, Brandon D Pickett, Yana Safonova, Francesco Montinaro, Yanting Luo, Joanna Malukiewicz, Jessica M Storer, Jiadong Lin, Abigail N Sequeira, Riley J Mangan, Glenn Hickey, Graciela Monfort Anez, Parithi Balachandran, Anton Bankevich, Christine R Beck, Arjun Biddanda, Matthew Borchers, Gerard G Bouffard, Emry Brannan, Shelise Y Brooks, Lucia Carbone, Laura Carrel, Agnes P Chan, Juyun Crawford, Mark Diekhans, Eric Engelbrecht, Cedric Feschotte, Giulio Formenti, Gage H Garcia, Luciana de Gennaro, David Gilbert, Richard E Green, Andrea Guarracino, Ishaan Gupta, Diana Haddad, Junmin Han, Robert S Harris, Gabrielle A Hartley, William T Harvey, Michael Hiller, Kendra Hoekzema, Marlys L Houck, Hyeonsoo Jeong, Kaivan Kamali, Manolis Kellis, Bryce Kille, Chul Lee, Youngho Lee, William Lees, Alexandra P Lewis, Qiuhui Li, Mark Loftus, Yong Hwee Eddie Loh, Hailey Loucks, Jian Ma, Yafei Mao, Juan F I Martinez, Patrick Masterson, Rajiv C McCoy, Barbara McGrath, Sean McKinney, Britta S Meyer, Karen H Miga, Saswat K Mohanty, Katherine M Munson, Karol Pal, Matt Pennell, Pavel A Pevzner, David Porubsky, Tamara Potapova, Francisca R Ringeling, Joana L Rocha, Oliver A Ryder, Samuel Sacco, Swati Saha, Takayo Sasaki, Michael C Schatz, Nicholas J Schork, Cole Shanks, Linnéa Smeds, Dongmin R Son, Cynthia Steiner, Alexander P Sweeten, Michael G Tassia, Françoise Thibaud-Nissen, Edmundo Torres-González, Mihir Trivedi, Wenjie Wei, Julie Wertz, Muyu Yang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhang, Sarah A Zhao, Yixin Zhu, Erich D Jarvis, Jennifer L Gerton, Iker Rivas-González, Benedict Paten, Zachary A Szpiech, Christian D Huber, Tobias L Lenz, Miriam K Konkel, Soojin V Yi, Stefan Canzar, Corey T Watson, Peter H Sudmant, Erin Molloy, Erik Garrison, Craig B Lowe, Mario Ventura, Rachel J O'Neill, Sergey Koren, Kateryna D Makova, Adam M Phillippy, Evan E Eichler | BioRxiv : The Preprint Server For Biology | 2024-07-31 | Abstract | |
| SkinCom, a synthetic skin microbial community, enables reproducible investigations of the human skin microbiome. | Asama Lekbua, Deepan Thiruppathy, Joanna Coker, Yuhan Weng, Fatemeh Askarian, Armin Kousha, Clarisse Marotz, Amber Hauw, Victor Nizet, Karsten Zengler | Cell Reports Methods | 2024-07-30 | Abstract | |
| Gut-Microbiota-Related Metabolite Phenylacetylglutamine and Risk of Incident Coronary Heart Disease among Women. | Yoriko Heianza, Saumya Tiwari, Xuan Wang, Jeramie D Watrous, Kathryn M Rexrode, Frank B Hu, Mona Alotaibi, Mohit Jain, Qi Sun, JoAnn E Manson, Lu Qi | The Journal Of Clinical Endocrinology And Metabolism | 2024-07-30 | Abstract | |
| Infant microbiota communities and HMO supplementation independently and synergistically shape metabolite production and immune responses in healthy mice. | Patricia Tripp, Erin C Davis, Manoj Gurung, Fernanda Rosa, Lars Bode, Renee Fox, Tanya LeRoith, Christy Simecka, Antti E Seppo, Kirsi M Järvinen, Laxmi Yeruva | The Journal Of Nutrition | 2024-07-26 | Abstract | |
| Gene expression and chromatin conformation of microglia in virally suppressed people with HIV. | Johannes Cm Schlachetzki, Sara Gianella, Zhengyu Ouyang, Addison J Lana, Xiaoxu Yang, Sydney O'Brien, Jean F Challacombe, Peter J Gaskill, Kelly L Jordan-Sciutto, Antoine Chaillon, David Moore, Cristian L Achim, Ronald J Ellis, Davey M Smith, Christopher K Glass | Life Science Alliance | 2024-07-26 | Abstract | |
| Gut Bacteria in Alcohol-Associated Liver Disease. | Yongqiang Yang, Bernd Schnabl | Clinics In Liver Disease | 2024-07-24 | Abstract | |
| SARS-CoV-2 monoclonal antibody treatment followed by vaccination shifts human memory B cell epitope recognition suggesting antibody feedback. | Nathaniel Bloom, Sydney I Ramirez, Hallie Cohn, Urvi M Parikh, Amy Heaps, Scott F Sieg, Alex Greninger, Justin Ritz, Carlee Moser, Joseph J Eron, Goran Bajic, Judith S Currier, Paul Klekotka, David A Wohl, Eric S Daar, Jonathan Li, Michael D Hughes, Kara W Chew, Davey M Smith, Shane Crotty, Camila H Coelho, | The Journal Of Infectious Diseases | 2024-07-22 | Abstract | |
| The indoors microbiome and human health. | Jack A Gilbert, Erica M Hartmann | Nature Reviews. Microbiology | 2024-07-19 | Abstract | |
| Comparative efficacy of pharmacologic therapies for MASH in reducing liver fat content: Systematic review and network meta-analysis. | Benjamin Koh, Jieling Xiao, Cheng Han Ng, Michelle Law, Shyna Zhuoying Gunalan, Pojsakorn Danpanichkul, Vijay Ramadoss, Benedix Kuan Loon Sim, En Ying Tan, Chong Boon Teo, Benjamin Nah, Margaret Teng, Karn Wijarnpreecha, Yuya Seko, Mei Chin Lim, Hirokazu Takahashi, Atsushi Nakajima, Mazen Noureddin, Mark Muthiah, Daniel Q Huang, Rohit Loomba | Hepatology (Baltimore, Md.) | 2024-07-19 | Abstract | |
| A therapy for suppressing canonical and noncanonical SARS-CoV-2 viral entry and an intrinsic intrapulmonary inflammatory response. | Sandra L Leibel, Rachael N McVicar, Rabi Murad, Elizabeth M Kwong, Alex E Clark, Asuka Alvarado, Bethany A Grimmig, Ruslan Nuryyev, Randee E Young, Jamie C Lee, Weiqi Peng, Yanfang P Zhu, Eric Griffis, Cameron J Nowell, Brian James, Suzie Alarcon, Atul Malhotra, Linden J Gearing, Paul J Hertzog, Cheska M Galapate, Koen M O Galenkamp, Cosimo Commisso, Davey M Smith, Xin Sun, Aaron F Carlin, Richard L Sidman, Ben A Croker, Evan Y Snyder | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2024-07-19 | Abstract | |
| House dust metagenome and pulmonary function in a US farming population. | Mikyeong Lee, Abhishek Kaul, James M Ward, Qiyun Zhu, Marie Richards, Ziyue Wang, Antonio González, Christine G Parks, Laura E Beane Freeman, David M Umbach, Alison A Motsinger-Reif, Rob Knight, Stephanie J London | Microbiome | 2024-07-18 | Abstract | |
| Severe Acute Respiratory Syndrome Coronavirus 2 Plasma Antibody and Nucleocapsid Antigen Status Predict Outcomes in Outpatients With Coronavirus Disease 2019. | Nikolaus Jilg, Mark J Giganti, Kara W Chew, Katy Shaw-Saliba, Justin Ritz, Carlee Moser, Teresa H Evering, Eric S Daar, Joseph J Eron, Judith S Currier, Michael D Hughes, H Cliff Lane, Robin Dewar, Davey M Smith, Jonathan Z Li | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2024-07-17 | Abstract | |
| Mixotrophic growth of a ubiquitous marine diatom. | Manish Kumar, Juan D Tibocha-Bonilla, Zoltán Füssy, Chloe Lieng, Sarah M Schwenck, Alice V Levesque, Mahmoud M Al-Bassam, Anurag Passi, Maxwell Neal, Cristal Zuniga, Farrah Kaiyom, Josh L Espinoza, Hyungyu Lim, Shawn W Polson, Lisa Zeigler Allen, Karsten Zengler | Science Advances | 2024-07-17 | Abstract | |
| How bile acids and the microbiota interact to shape host immunity. | Michael H Lee, Sean-Paul Nuccio, Ipsita Mohanty, Lee R Hagey, Pieter C Dorrestein, Hiutung Chu, Manuela Raffatellu | Nature Reviews. Immunology | 2024-07-15 | Abstract | |
| Human microglial cells as a therapeutic target in a neurodevelopmental disease model. | Pinar Mesci, Christopher N LaRock, Jacob J Jeziorski, Hideyuki Nakashima, Natalia Chermont, Adriano Ferrasa, Roberto H Herai, Tomoka Ozaki, Aurian Saleh, Cedric E Snethlage, Sandra Sanchez, Gabriela Goldberg, Cleber A Trujillo, Kinichi Nakashima, Victor Nizet, Alysson R Muotri | Stem Cell Reports | 2024-07-13 | Abstract | |
| Priming antibody responses to the fusion peptide in rhesus macaques. | Christopher A Cottrell, Payal P Pratap, Kimberly M Cirelli, Diane G Carnathan, Chiamaka A Enemuo, Aleksandar Antanasijevic, Gabriel Ozorowski, Leigh M Sewall, Hongmei Gao, Joel D Allen, Bartek Nogal, Murillo Silva, Jinal Bhiman, Matthias Pauthner, Darrell J Irvine, David Montefiori, Max Crispin, Dennis R Burton, Guido Silvestri, Shane Crotty, Andrew B Ward | NPJ Vaccines | 2024-07-12 | Abstract | |
| Bacteriophage Φ21's receptor-binding protein evolves new functions through destabilizing mutations that generate non-genetic phenotypic heterogeneity. | Krista R Gerbino, Joshua M Borin, Sarah M Ardell, Justin J Lee, Kevin D Corbett, Justin R Meyer | Virus Evolution | 2024-07-11 | Abstract | |
| Dietary Iron Intake Has Long-Term Effects on the Fecal Metabolome and Microbiome. | Anastasiia Kostenko, Simone Zuffa, Hui Zhi, Kevin Mildau, Manuela Raffatellu, Pieter C Dorrestein, Allegra T Aron | Metallomics : Integrated Biometal Science | 2024-07-11 | Abstract | |
| Application of Novel Biomarkers in MASLD: Precision Medicine Based Approach. | Nimish Thakral, Hailemichael Desalegn, Luis Antonio Diaz, Daniel Cabrera, Rohit Loomba, Marco Arrese, Juan Pablo Arab | Seminars In Liver Disease | 2024-07-11 | Abstract | |
| RIG-I-like receptor DRH-1 signals via CARDs to activate antiviral immunity in intestinal cells. | Lakshmi E Batachari, Alyssa Y Dai, Emily R Troemel | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2024-07-09 | Abstract | |
| Impact of diet change on the gut microbiome of common marmosets (). | Cassandra Tang-Wing, Ipsita Mohanty, MacKenzie Bryant, Katherine Makowski, Daira Melendez, Pieter C Dorrestein, Rob Knight, Andrés Mauricio Caraballo-Rodríguez, Celeste Allaband, Keith Jenné | MSystems | 2024-07-08 | Abstract | |
| Global prevalence, clinical characteristics, surveillance, treatment allocation, and outcomes of alcohol-associated hepatocellular carcinoma. | Rebecca Wenling Zeng, Christen En Ya Ong, Elden Yen Hng Ong, Charlotte Hui Chung, Wen Hui Lim, Jieling Xiao, Pojsakorn Danpanichkul, Jia Hao Law, Nicholas Syn, Douglas Chee, Alfred Wei Chieh Kow, Sung Won Lee, Hirokazu Takahashi, Takumi Kawaguchi, Nobuharu Tamaki, Yock Young Dan, Atsushi Nakajima, Karn Wijarnpreecha, Mark D Muthiah, Mazen Noureddin, Rohit Loomba, George N Ioannou, Darren Jun Hao Tan, Cheng Han Ng, Daniel Q Huang | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2024-07-08 | Abstract | |
| Integrative genomic reconstruction of carbohydrate utilization networks in bifidobacteria: global trends, local variability, and dietary adaptation. | Aleksandr A Arzamasov, Dmitry A Rodionov, Matthew C Hibberd, Janaki L Guruge, Marat D Kazanov, Semen A Leyn, James E Kent, Kristija Sejane, Lars Bode, Michael J Barratt, Jeffrey I Gordon, Andrei L Osterman | BioRxiv : The Preprint Server For Biology | 2024-07-07 | Abstract | |
| Orsay Virus Infection in Caenorhabditis elegans. | Lakshmi E Batachari, Mario Bardan Sarmiento, Nicole Wernet, Emily R Troemel | Current Protocols | 2024-07-05 | Abstract | |
| More evolvable bacteriophages better suppress their host. | Elijah K Horwitz, Hannah M Strobel, Jason Haiso, Justin R Meyer | Evolutionary Applications | 2024-07-04 | Abstract | |
| An intron endonuclease facilitates interference competition between coinfecting viruses. | Erica A Birkholz, Chase J Morgan, Thomas G Laughlin, Rebecca K Lau, Amy Prichard, Sahana Rangarajan, Gabrielle N Meza, Jina Lee, Emily Armbruster, Sergey Suslov, Kit Pogliano, Justin R Meyer, Elizabeth Villa, Kevin D Corbett, Joe Pogliano | Science (New York, N.Y.) | 2024-07-04 | Abstract | |
| Feasibility of Home Collection for Urogenital Microbiome Samples. | Emily S Lukacz, Cynthia S Fok, MacKenzie Bryant, Dulce P Rodriguez-Ponciano, Melanie R Meister, Margaret G Mueller, Cora E Lewis, Jerry L Lowder, Ariana L Smith, Ann Stapleton, Amy Ayala, Ratna Pakpahan, Sarah Hortsch, Daniel McDonald, Sara Putnam, Kyle Rudser, Se Jin Song, Rob Knight, Linda Brubaker, | Urogynecology (Philadelphia, Pa.) | 2024-07-03 | Abstract | |
| PI3Kγ inhibition circumvents inflammation and vascular leak in SARS-CoV-2 and other infections. | Ryan M Shepard, Anghesom Ghebremedhin, Isaraphorn Pratumchai, Sally R Robinson, Courtney Betts, Jingjing Hu, Roman Sasik, Kathleen M Fisch, Jaroslav Zak, Hui Chen, Marc Paradise, Jason Rivera, Mohammad Amjad, Satoshi Uchiyama, Hideya Seo, Alejandro D Campos, Denise Ann Dayao, Saul Tzipori, Cesar Piedra-Mora, Soumita Das, Farnaz Hasteh, Hana Russo, Xin Sun, Le Xu, Laura Crotty E Alexander, Jason M Duran, Mazen Odish, Victor Pretorius, Nell C Kirchberger, Shao-Ming Chin, Tami Von Schalscha, David Cheresh, John D Morrey, Rossitza Alargova, Brenda O'Connell, Theodore A Martinot, Sandip P Patel, Victor Nizet, Amanda J Martinot, Lisa M Coussens, John R Teijaro, Judith A Varner | Science Translational Medicine | 2024-07-03 | Abstract | |
| Early Viral Dynamics Predict Human Immunodeficiency Virus Posttreatment Control After Analytic Treatment Interruption. | Gesham Magombedze, Elena Vendrame, Devi SenGupta, Romas Geleziunas, Susan Little, Davey Smith, Bruce Walker, Jean-Pierre Routy, Frederick M Hecht, Tae-Wook Chun, Michael Sneller, Jonathan Z Li, Steven G Deeks, Michael J Peluso | The Journal Of Infectious Diseases | 2024-07-02 | Abstract | |
| An efficient -inducible CRISPR interference system for group A genetic analysis and pathogenesis studies. | Elisabet Bjånes, Alexandra Stream, Axel B Janssen, Paddy S Gibson, Afonso M Bravo, Samira Dahesh, Jonathon L Baker, Andrew Varble, Victor Nizet, Jan-Willem Veening | MBio | 2024-07-02 | Abstract | |
| Time of sample collection is critical for the replicability of microbiome analyses. | Celeste Allaband, Amulya Lingaraju, Stephany Flores Ramos, Tanya Kumar, Haniyeh Javaheri, Maria D Tiu, Ana Carolina Dantas Machado, R Alexander Richter, Emmanuel Elijah, Gabriel G Haddad, Vanessa A Leone, Pieter C Dorrestein, Rob Knight, Amir Zarrinpar | Nature Metabolism | 2024-07-01 | Abstract | |
| Serum and CSF metabolomics analysis shows Mediterranean Ketogenic Diet mitigates risk factors of Alzheimer's disease. | Annalise Schweickart, Richa Batra, Bryan J Neth, Cameron Martino, Liat Shenhav, Anru R Zhang, Pixu Shi, Naama Karu, Kevin Huynh, Peter J Meikle, Leyla Schimmel, Amanda Hazel Dilmore, Kaj Blennow, Henrik Zetterberg, Colette Blach, Pieter C Dorrestein, Rob Knight, , Suzanne Craft, Rima Kaddurah-Daouk, Jan Krumsiek | NPJ Metabolic Health And Disease | 2024-07-01 | Abstract | |
| Microbial solutions must be deployed against climate catastrophe. | Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert | FEMS Microbiology Ecology | 2024-06-27 | Abstract | |
| Pangenome comparison of genomospecies unveils genetic diversity and ecological insights. | Renee E Oles, Marvic Carrillo Terrazas, Luke R Loomis, Chia-Yun Hsu, Caitlin Tribelhorn, Pedro Belda-Ferre, Allison C Ea, MacKenzie Bryant, Jocelyn A Young, Hannah C Carrow, William J Sandborn, Parambir S Dulai, Mamata Sivagnanam, David Pride, Rob Knight, Hiutung Chu | MSystems | 2024-06-27 | Abstract | |
| Host ecotype and rearing environment are the main drivers of threespine stickleback gut microbiota diversity in a naturalistic experiment. | Andreas Härer, Christine J Frazier, Diana J Rennison | Royal Society Open Science | 2024-06-26 | Abstract | |
| Retraction Note: Microbiome analyses of blood and tissues suggest cancer diagnostic approach. | Gregory D Poore, Evguenia Kopylova, Qiyun Zhu, Carolina Carpenter, Serena Fraraccio, Stephen Wandro, Tomasz Kosciolek, Stefan Janssen, Jessica Metcalf, Se Jin Song, Jad Kanbar, Sandrine Miller-Montgomery, Robert Heaton, Rana Mckay, Sandip Pravin Patel, Austin D Swafford, Rob Knight | Nature | 2024-06-26 | Abstract | |
| Leptochelins A-C, Cytotoxic Metallophores Produced by Geographically Dispersed Strains of Marine Cyanobacteria. | Nicole E Avalon, Mariana A Reis, Christopher C Thornburg, R Thomas Williamson, Daniel Petras, Allegra T Aron, George F Neuhaus, Momen Al-Hindy, Jana Mitrevska, Leonor Ferreira, João Morais, Yasin El Abiead, Evgenia Glukhov, Kelsey L Alexander, F Alexandra Vulpanovici, Matthew J Bertin, Syrena Whitner, Hyukjae Choi, Gabriella Spengler, Kirill Blinov, Ameen M Almohammadi, Lamiaa A Shaala, William R Kew, Ljiljana Paša-Tolić, Diaa T A Youssef, Pieter C Dorrestein, Vitor Vasconcelos, Lena Gerwick, Kerry L McPhail, William H Gerwick | Journal Of The American Chemical Society | 2024-06-25 | Abstract | |
| Strain-specific gut microbial signatures in type 2 diabetes identified in a cross-cohort analysis of 8,117 metagenomes. | Zhendong Mei, Fenglei Wang, Amrisha Bhosle, Danyue Dong, Raaj Mehta, Andrew Ghazi, Yancong Zhang, Yuxi Liu, Ehud Rinott, Siyuan Ma, Eric B Rimm, Martha Daviglus, Walter C Willett, Rob Knight, Frank B Hu, Qibin Qi, Andrew T Chan, Robert D Burk, Meir J Stampfer, Iris Shai, Robert C Kaplan, Curtis Huttenhower, Dong D Wang | Nature Medicine | 2024-06-25 | Abstract | |
| Synthetic lethality and the minimal genome size problem. | Sara Rahiminejad, Bianca De Sanctis, Pavel Pevzner, Arcady Mushegian | MSphere | 2024-06-21 | Abstract | |
| Proteome allocation is linked to transcriptional regulation through a modularized transcriptome. | Arjun Patel, Dominic McGrosso, Ying Hefner, Anaamika Campeau, Anand V Sastry, Svetlana Maurya, Kevin Rychel, David J Gonzalez, Bernhard O Palsson | Nature Communications | 2024-06-19 | Abstract | |
| Small molecule in situ resin capture provides a compound first approach to natural product discovery. | Alexander Bogdanov, Mariam N Salib, Alexander B Chase, Heinz Hammerlindl, Mitchell N Muskat, Stephanie Luedtke, Elany Barbosa da Silva, Anthony J O'Donoghue, Lani F Wu, Steven J Altschuler, Tadeusz F Molinski, Paul R Jensen | Nature Communications | 2024-06-19 | Abstract | |
| Dietary Acculturation Is Associated With Altered Gut Microbiome, Circulating Metabolites, and Cardiovascular Disease Risk in US Hispanics and Latinos: Results From HCHS/SOL. | Yi Wang, Guo-Chong Chen, Zheng Wang, Kai Luo, Yanbo Zhang, Yang Li, Amanda C McClain, Marta M Jankowska, Krista M Perreira, Josiemer Mattei, Carmen R Isasi, Maria M Llabre, Bharat Thyagarajan, Martha L Daviglus, Linda Van Horn, David Goldsztajn Farelo, Luis E Maldonado, Steven R Levine, Bing Yu, Eric Boerwinkle, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi, Brandilyn A Peters | Circulation | 2024-06-19 | Abstract | |
| Engineering plasmid copy number heterogeneity for dynamic microbial adaptation. | Shalni Kumar, Andrew Lezia, Jeff Hasty | Nature Microbiology | 2024-06-18 | Abstract | |
| In vitro evolution and whole genome analysis to study chemotherapy drug resistance in haploid human cells. | Juan Carlos Jado, Michelle Dow, Krypton Carolino, Adam Klie, Gregory J Fonseca, Trey Ideker, Hannah Carter, Elizabeth A Winzeler | Scientific Reports | 2024-06-18 | Abstract | |
| Author Correction: Vaccination induces broadly neutralizing antibody precursors to HIV gp41. | Torben Schiffner, Ivy Phung, Rashmi Ray, Adriana Irimia, Ming Tian, Olivia Swanson, Jeong Hyun Lee, Chang-Chun D Lee, Ester Marina-Zárate, So Yeon Cho, Jiachen Huang, Gabriel Ozorowski, Patrick D Skog, Andreia M Serra, Kimmo Rantalainen, Joel D Allen, Sabyasachi Baboo, Oscar L Rodriguez, Sunny Himansu, Jianfu Zhou, Jonathan Hurtado, Claudia T Flynn, Katherine McKenney, Colin Havenar-Daughton, Swati Saha, Kaitlyn Shields, Steven Schultze, Melissa L Smith, Chi-Hui Liang, Laura Toy, Simone Pecetta, Ying-Cing Lin, Jordan R Willis, Fabian Sesterhenn, Daniel W Kulp, Xiaozhen Hu, Christopher A Cottrell, Xiaoya Zhou, Jennifer Ruiz, Xuesong Wang, Usha Nair, Kathrin H Kirsch, Hwei-Ling Cheng, Jillian Davis, Oleksandr Kalyuzhniy, Alessia Liguori, Jolene K Diedrich, Julia T Ngo, Vanessa Lewis, Nicole Phelps, Ryan D Tingle, Skye Spencer, Erik Georgeson, Yumiko Adachi, Michael Kubitz, Saman Eskandarzadeh, Marc A Elsliger, Rama R Amara, Elise Landais, Bryan Briney, Dennis R Burton, Diane G Carnathan, Guido Silvestri, Corey T Watson, John R Yates, James C Paulson, Max Crispin, Gevorg Grigoryan, Andrew B Ward, Devin Sok, Frederick W Alt, Ian A Wilson, Facundo D Batista, Shane Crotty, William R Schief | Nature Immunology | 2024-06-14 | Abstract | |
| The Natural History of Post-Chikungunya Viral Arthritis Disease Activity and T-cell Immunology: A Cohort Study. | Aileen Yu-Hen Chang, Alfonso Sucerquia Hernández, Jose Forero Mejía, Sarah Renee Tritsch, Evelyn Mendoza-Torres, Liliana Encinales, Andres Cadena Bonfanti, Abigale Marie Proctor, Gary Leonard Simon, Samuel Joseph Simmens, Gary Steven Firestein | Journal Of Cellular Immunology | 2024-06-14 | Abstract | |
| Scaling DEPP phylogenetic placement to ultra-large reference trees: a tree-aware ensemble approach. | Yueyu Jiang, Daniel McDonald, Daniela Perry, Rob Knight, Siavash Mirarab | Bioinformatics (Oxford, England) | 2024-06-13 | Abstract | |
| Conservation of C4BP-binding sequence patterns in Streptococcus pyogenes M and Enn proteins. | Piotr Kolesiński, Matthew McGowan, Anne Botteaux, Pierre R Smeesters, Partho Ghosh | The Journal Of Biological Chemistry | 2024-06-13 | Abstract | |
| Exploring the genetics of lithium response in bipolar disorders. | Marisol Herrera-Rivero, Mazda Adli, Kazufumi Akiyama, Nirmala Akula, Azmeraw T Amare, Raffaella Ardau, Bárbara Arias, Jean-Michel Aubry, Lena Backlund, Frank Bellivier, Antonio Benabarre, Susanne Bengesser, Abesh Kumar Bhattacharjee, Joanna M Biernacka, Armin Birner, Micah Cearns, Pablo Cervantes, Hsi-Chung Chen, Caterina Chillotti, Sven Cichon, Scott R Clark, Francesc Colom, Cristiana Cruceanu, Piotr M Czerski, Nina Dalkner, Franziska Degenhardt, Maria Del Zompo, J Raymond DePaulo, Bruno Etain, Peter Falkai, Ewa Ferensztajn-Rochowiak, Andreas J Forstner, Josef Frank, Louise Frisén, Mark A Frye, Janice M Fullerton, Carla Gallo, Sébastien Gard, Julie S Garnham, Fernando S Goes, Maria Grigoroiu-Serbanescu, Paul Grof, Ryota Hashimoto, Roland Hasler, Joanna Hauser, Urs Heilbronner, Stefan Herms, Per Hoffmann, Liping Hou, Yi-Hsiang Hsu, Stephane Jamain, Esther Jiménez, Jean-Pierre Kahn, Layla Kassem, Tadafumi Kato, John Kelsoe, Sarah Kittel-Schneider, Po-Hsiu Kuo, Ichiro Kusumi, Barbara König, Gonzalo Laje, Mikael Landén, Catharina Lavebratt, Marion Leboyer, Susan G Leckband, Mario Maj, Mirko Manchia, Cynthia Marie-Claire, Lina Martinsson, Michael J McCarthy, Susan L McElroy, Vincent Millischer, Marina Mitjans, Francis M Mondimore, Palmiero Monteleone, Caroline M Nievergelt, Tomas Novák, Markus M Nöthen, Claire O'Donovan, Norio Ozaki, Sergi Papiol, Andrea Pfennig, Claudia Pisanu, James B Potash, Andreas Reif, Eva Reininghaus, Hélène Richard-Lepouriel, Gloria Roberts, Guy A Rouleau, Janusz K Rybakowski, Martin Schalling, Peter R Schofield, Klaus Oliver Schubert, Eva C Schulte, Barbara W Schweizer, Giovanni Severino, Tatyana Shekhtman, Paul D Shilling, Katzutaka Shimoda, Christian Simhandl, Claire M Slaney, Alessio Squassina, Thomas Stamm, Pavla Stopkova, Fabian Streit, Fasil Tekola-Ayele, Anbupalam Thalamuthu, Alfonso Tortorella, Gustavo Turecki, Julia Veeh, Eduard Vieta, Biju Viswanath, Stephanie H Witt, Peter P Zandi, Martin Alda, Michael Bauer, Francis J McMahon, Philip B Mitchell, Marcella Rietschel, Thomas G Schulze, Bernhard T Baune | International Journal Of Bipolar Disorders | 2024-06-12 | Abstract | |
| Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium. | Garrett Dunlap, Aaron Wagner, Nida Meednu, Ruoqiao Wang, Fan Zhang, Jabea Cyril Ekabe, Anna Helena Jonsson, Kevin Wei, Saori Sakaue, Aparna Nathan, , Vivian P Bykerk, Laura T Donlin, Susan M Goodman, Gary S Firestein, David L Boyle, V Michael Holers, Larry W Moreland, Darren Tabechian, Costantino Pitzalis, Andrew Filer, Soumya Raychaudhuri, Michael B Brenner, Juilee Thakar, Andrew McDavid, Deepak A Rao, Jennifer H Anolik | Nature Communications | 2024-06-11 | Abstract | |
| A simple rule for predicting function of microbial communities. | Sergey Kryazhimskiy | Cell | 2024-06-08 | Abstract | |
| Effects of intensive lifestyle changes on the progression of mild cognitive impairment or early dementia due to Alzheimer's disease: a randomized, controlled clinical trial. | Dean Ornish, Catherine Madison, Miia Kivipelto, Colleen Kemp, Charles E McCulloch, Douglas Galasko, Jon Artz, Dorene Rentz, Jue Lin, Kim Norman, Anne Ornish, Sarah Tranter, Nancy DeLamarter, Noel Wingers, Carra Richling, Rima Kaddurah-Daouk, Rob Knight, Daniel McDonald, Lucas Patel, Eric Verdin, Rudolph E Tanzi, Steven E Arnold | Alzheimer's Research & Therapy | 2024-06-07 | Abstract | |
| Association between butyrate-producing gut bacteria and the risk of infectious disease hospitalisation: results from two observational, population-based microbiome studies. | Robert F J Kullberg, Irina Wikki, Bastiaan W Haak, Anni Kauko, Henrike Galenkamp, Hessel Peters-Sengers, Joe M Butler, Aki S Havulinna, Joonatan Palmu, Daniel McDonald, Chouaib Benchraka, Mahmoud I Abdel-Aziz, Maria Prins, Anke H Maitland van der Zee, Bert-Jan van den Born, Pekka Jousilahti, Willem M de Vos, Veikko Salomaa, Rob Knight, Leo Lahti, Max Nieuwdorp, Teemu Niiranen, W Joost Wiersinga | The Lancet. Microbe | 2024-06-07 | Abstract | |
| A Prebiotic Diet Containing Galactooligosaccharides and Polydextrose Produces Dynamic and Reproducible Changes in the Gut Microbial Ecosystem in Male Rats. | Robert S Thompson, Samuel J Bowers, Fernando Vargas, Shelby Hopkins, Tel Kelley, Antonio Gonzalez, Christopher A Lowry, Pieter C Dorrestein, Martha Hotz Vitaterna, Fred W Turek, Rob Knight, Kenneth P Wright, Monika Fleshner | Nutrients | 2024-06-06 | Abstract | |
| A treasure trove of 1034 actinomycete genomes. | Tue Sparholt Jørgensen, Omkar S Mohite, Eva B Sterndorff, Maria Alvarez-Arevalo, Kai Blin, Thomas J Booth, Pep Charusanti, David Faurdal, Troels Ø Hansen, Matin Nuhamunada, Anna-Sophie Mourched, Bernhard Ø Palsson, Tilmann Weber | Nucleic Acids Research | 2024-06-04 | Abstract | |
| The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions. | Christopher Dalldorf, Kevin Rychel, Richard Szubin, Ying Hefner, Arjun Patel, Daniel C Zielinski, Bernhard O Palsson | MSystems | 2024-06-03 | Abstract | |
| Endogenous ethanol production in health and disease. | Abraham S Meijnikman, Max Nieuwdorp, Bernd Schnabl | Nature Reviews. Gastroenterology & Hepatology | 2024-06-03 | Abstract | |
| Outcomes of SARS-CoV-2 and seasonal viruses among 2 million adults hospitalized for severe acute respiratory infection during the COVID-19 pandemic in Brazil. | Lilian M Diniz, Cristiane S Dias, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Clara C Pinhati, Stella C Galante, Isadora O Yan, Hercílio Martelli-Júnior, Eduardo A Oliveira | The Journal Of Infectious Diseases | 2024-05-31 | Abstract | |
| Exploring roles of the chitinase ChiC in modulating virulence phenotypes. | Per Kristian Thorén Edvardsen, Fatemeh Askarian, Raymond Zurich, Victor Nizet, Gustav Vaaje-Kolstad | Microbiology Spectrum | 2024-05-31 | Abstract | |
| Deciphering nutritional stress responses via knowledge-enriched transcriptomics for microbial engineering. | Jongoh Shin, Daniel C Zielinski, Bernhard O Palsson | Metabolic Engineering | 2024-05-31 | Abstract | |
| Affinity gaps among B cells in germinal centers drive the selection of MPER precursors. | Rashmi Ray, Torben Schiffner, Xuesong Wang, Yu Yan, Kimmo Rantalainen, Chang-Chun David Lee, Shivang Parikh, Raphael A Reyes, Gordon A Dale, Ying-Cing Lin, Simone Pecetta, Sophie Giguere, Olivia Swanson, Sven Kratochvil, Eleonora Melzi, Ivy Phung, Lisa Madungwe, Oleksandr Kalyuzhniy, John Warner, Stephanie R Weldon, Ryan Tingle, Edward Lamperti, Kathrin H Kirsch, Nicole Phelps, Erik Georgeson, Yumiko Adachi, Michael Kubitz, Usha Nair, Shane Crotty, Ian A Wilson, William R Schief, Facundo D Batista | Nature Immunology | 2024-05-30 | Abstract | |
| Vaccination induces broadly neutralizing antibody precursors to HIV gp41. | Torben Schiffner, Ivy Phung, Rashmi Ray, Adriana Irimia, Ming Tian, Olivia Swanson, Jeong Hyun Lee, Chang-Chun D Lee, Ester Marina-Zárate, So Yeon Cho, Jiachen Huang, Gabriel Ozorowski, Patrick D Skog, Andreia M Serra, Kimmo Rantalainen, Joel D Allen, Sabyasachi Baboo, Oscar L Rodriguez, Sunny Himansu, Jianfu Zhou, Jonathan Hurtado, Claudia T Flynn, Katherine McKenney, Colin Havenar-Daughton, Swati Saha, Kaitlyn Shields, Steven Schulze, Melissa L Smith, Chi-Hui Liang, Laura Toy, Simone Pecetta, Ying-Cing Lin, Jordan R Willis, Fabian Sesterhenn, Daniel W Kulp, Xiaozhen Hu, Christopher A Cottrell, Xiaoya Zhou, Jennifer Ruiz, Xuesong Wang, Usha Nair, Kathrin H Kirsch, Hwei-Ling Cheng, Jillian Davis, Oleksandr Kalyuzhniy, Alessia Liguori, Jolene K Diedrich, Julia T Ngo, Vanessa Lewis, Nicole Phelps, Ryan D Tingle, Skye Spencer, Erik Georgeson, Yumiko Adachi, Michael Kubitz, Saman Eskandarzadeh, Marc A Elsliger, Rama R Amara, Elise Landais, Bryan Briney, Dennis R Burton, Diane G Carnathan, Guido Silvestri, Corey T Watson, John R Yates, James C Paulson, Max Crispin, Gevorg Grigoryan, Andrew B Ward, Devin Sok, Frederick W Alt, Ian A Wilson, Facundo D Batista, Shane Crotty, William R Schief | Nature Immunology | 2024-05-30 | Abstract | |
| Microbiologist in the Clinic: Postmenopausal Woman with Chronic OAB and Positive Urine Culture. | Linda Brubaker, Harry Horsley, Rajvinder Khasriya, Alan J Wolfe | International Urogynecology Journal | 2024-05-27 | Abstract | |
| Comparative Metabolomics and Microbiome Analysis of Ethanol versus OMNImet/gene•GUT Fecal Stabilization. | Heidi Isokääntä, Lucas Pinto da Silva, Naama Karu, Teemu Kallonen, Anna-Katariina Aatsinki, Thomas Hankemeier, Leyla Schimmel, Edgar Diaz, Tuulia Hyötyläinen, Pieter C Dorrestein, Rob Knight, Matej Orešič, Rima Kaddurah-Daouk, Alex M Dickens, Santosh Lamichhane | Analytical Chemistry | 2024-05-23 | Abstract | |
| Environmental metabolomics characterization of modern stromatolites and annotation of ibhayipeptolides. | George F Neuhaus, Allegra T Aron, Eric W Isemonger, Daniel Petras, Samantha C Waterworth, Luthando S Madonsela, Emily C Gentry, Xavier Siwe Noundou, Jarmo-Charles J Kalinski, Alexandros Polyzois, Julius C Habiyaremye, Margaret A Redick, Jason C Kwan, Rosemary A Dorrington, Pieter C Dorrestein, Kerry L McPhail | PloS One | 2024-05-23 | Abstract | |
| SARS-CoV-2 breakthrough infections enhance T cell response magnitude, breadth, and epitope repertoire. | Alison Tarke, Parham Ramezani-Rad, Tertuliano Alves Pereira Neto, Yeji Lee, Vanessa Silva-Moraes, Benjamin Goodwin, Nathaniel Bloom, Leila Siddiqui, Liliana Avalos, April Frazier, Zeli Zhang, Ricardo da Silva Antunes, Jennifer Dan, Shane Crotty, Alba Grifoni, Alessandro Sette | Cell Reports. Medicine | 2024-05-22 | Abstract | |
| The Prospect of Biomimetic Immune Cell Membrane-Coated Nanomedicines for Treatment of Serious Bacterial Infections and Sepsis. | Alexandria Hoffman, Victor Nizet | The Journal Of Pharmacology And Experimental Therapeutics | 2024-05-21 | Abstract | |
| Aquatic processing enhances the loss of aged carbon from drained and burned peatlands. | Jennifer C Bowen, Alison M Hoyt, Xiaomei Xu, Muhammad Nuriman, Gusti Z Anshari, Putri Juliandini Wahyudio, Lihini I Aluwihare | Global Change Biology | 2024-05-21 | Abstract |
×
