These are the LAST 12 MONTHS of publications from the CMI membership team.
To see or search all of the publications, visit the archives page.
| Article | Authors | Journal | Date |
|---|---|---|---|
| Metformin inhibition of mitochondrial ATP and DNA synthesis abrogates NLRP3 inflammasome activation and pulmonary inflammation. | Hongxu Xian, Yuan Liu, Alexandra Rundberg Nilsson, Raphaella Gatchalian, Timothy R Crother, Warren G Tourtellotte, Yi Zhang, German R Aleman-Muench, Gavin Lewis, Weixuan Chen, Sarah Kang, Melissa Luevanos, Dorit Trudler, Stuart A Lipton, Pejman Soroosh, John Teijaro, Juan Carlos de la Torre, Moshe Arditi, Michael Karin, Elsa Sanchez-Lopez | Immunity | 2021-06-10 |
| SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment. | Clarisse Marotz, Pedro Belda-Ferre, Farhana Ali, Promi Das, Shi Huang, Kalen Cantrell, Lingjing Jiang, Cameron Martino, Rachel E Diner, Gibraan Rahman, Daniel McDonald, George Armstrong, Sho Kodera, Sonya Donato, Gertrude Ecklu-Mensah, Neil Gottel, Mariana C Salas Garcia, Leslie Y Chiang, Rodolfo A Salido, Justin P Shaffer, Mac Kenzie Bryant, Karenina Sanders, Greg Humphrey, Gail Ackermann, Niina Haiminen, Kristen L Beck, Ho-Cheol Kim, Anna Paola Carrieri, Laxmi Parida, Yoshiki Vázquez-Baeza, Francesca J Torriani, Rob Knight, Jack Gilbert, Daniel A Sweeney, Sarah M Allard | Microbiome | 2021-06-08 |
| Coevolutionary phage training leads to greater bacterial suppression and delays the evolution of phage resistance. | Joshua M Borin, Sarit Avrani, Jeffrey E Barrick, Katherine L Petrie, Justin R Meyer | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2021-06-04 |
| Mining genomes to illuminate the specialized chemistry of life. | Marnix H Medema, Tristan de Rond, Bradley S Moore | Nature Reviews. Genetics | 2021-06-03 |
| Biotechnology for secure biocontainment designs in an emerging bioeconomy. | Kathleen L Arnolds, Lukas R Dahlin, Lin Ding, Chao Wu, Jianping Yu, Wei Xiong, Cristal Zuniga, Yo Suzuki, Karsten Zengler, Jeffrey G Linger, Michael T Guarnieri | Current Opinion In Biotechnology | 2021-06-03 |
| Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers. | Qiyun Zhu, Qiangchuan Hou, Shi Huang, Qianying Ou, Dongxue Huo, Yoshiki Vázquez-Baeza, Chaoping Cen, Victor Cantu, Mehrbod Estaki, Haibo Chang, Pedro Belda-Ferre, Ho-Cheol Kim, Kaining Chen, Rob Knight, Jiachao Zhang | The ISME Journal | 2021-06-02 |
| Non-alcoholic Steatohepatitis and HCC in a Hyperphagic Mouse Accelerated by Western Diet. | Souradipta Ganguly, German Aleman Muench, Linshan Shang, Sara Brin Rosenthal, Gibraan Rahman, Ruoyu Wang, Yanhan Wang, Hyeok Choon Kwon, Anthony M Diomino, Tatiana Kisseleva, Pejman Soorosh, Mojgan Hosseini, Rob Knight, Bernd Schnabl, David A Brenner, Debanjan Dhar | Cellular And Molecular Gastroenterology And Hepatology | 2021-05-29 |
| Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery. | Bahar Behsaz, Edna Bode, Alexey Gurevich, Yan-Ni Shi, Florian Grundmann, Deepa Acharya, Andrés Mauricio Caraballo-Rodríguez, Amina Bouslimani, Morgan Panitchpakdi, Annabell Linck, Changhui Guan, Julia Oh, Pieter C Dorrestein, Helge B Bode, Pavel A Pevzner, Hosein Mohimani | Nature Communications | 2021-05-28 |
| COVID-19 Severity Potentially Modulated by Cardiovascular-Disease-Associated Immune Dysregulation. | Abby C Lee, Grant Castaneda, Wei Tse Li, Chengyu Chen, Neil Shende, Jaideep Chakladar, Pam R Taub, Eric Y Chang, Weg M Ongkeko | Viruses | 2021-05-28 |
| Recurrent urinary tract infection: Association of clinical profiles with urobiome composition in women. | Lindsey A Burnett, Baylie R Hochstedler, Kelly Weldon, Alan J Wolfe, Linda Brubaker | Neurourology And Urodynamics | 2021-05-26 |
| Bromodomain protein BRD4 directs and sustains CD8 T cell differentiation during infection. | J Justin Milner, Clara Toma, Sara Quon, Kyla Omilusik, Nicole E Scharping, Anup Dey, Miguel Reina-Campos, Hongtuyet Nguyen, Adam J Getzler, Huitian Diao, Bingfei Yu, Arnaud Delpoux, Tomomi M Yoshida, Deyao Li, Jun Qi, Adam Vincek, Stephen M Hedrick, Takeshi Egawa, Ming-Ming Zhou, Shane Crotty, Keiko Ozato, Matthew E Pipkin, Ananda W Goldrath | The Journal Of Experimental Medicine | 2021-05-26 |
| Structure-based protein function prediction using graph convolutional networks. | Vladimir Gligorijević, P Douglas Renfrew, Tomasz Kosciolek, Julia Koehler Leman, Daniel Berenberg, Tommi Vatanen, Chris Chandler, Bryn C Taylor, Ian M Fisk, Hera Vlamakis, Ramnik J Xavier, Rob Knight, Kyunghyun Cho, Richard Bonneau | Nature Communications | 2021-05-26 |
| The quantitative metabolome is shaped by abiotic constraints. | Amir Akbari, James T Yurkovich, Daniel C Zielinski, Bernhard O Palsson | Nature Communications | 2021-05-26 |
| Sequence determinants in the cathelicidin LL37 that promote inflammation via presentation of RNA to scavenger receptors. | Nikhil N Kulkarni, Alan M O'Neill, Tatsuya Dokoshi, Elizabeth W C Luo, Gerard C L Wong, Richard L Gallo | The Journal Of Biological Chemistry | 2021-05-25 |
| Associations of healthy food choices with gut microbiota profiles. | Kari K Koponen, Aaro Salosensaari, Matti O Ruuskanen, Aki S Havulinna, Satu Männistö, Pekka Jousilahti, Joonatan Palmu, Rodolfo Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Guillaume Meric, Susan Cheng, Michael Inouye, Mohit Jain, Teemu J Niiranen, Liisa M Valsta, Rob Knight, Veikko V Salomaa | The American Journal Of Clinical Nutrition | 2021-05-21 |
| Hypoxia-Inducible Factor 1 Alpha Is Dispensable for Host Defense of Group B Streptococcus Colonization and Infection. | Gregory R Lum, Vicki Mercado, Diede van Ens, Victor Nizet, Jacqueline M Kimmey, Kathryn A Patras | Journal Of Innate Immunity | 2021-05-21 |
| Asymmetric localization of the cell division machinery during sporulation. | Kanika Khanna, Javier Lopez Garrido, Joseph Sugie, Kit Pogliano, Elizabeth Villa | ELife | 2021-05-21 |
| Impact of Vaginal Estrogen on the Urobiome in Postmenopausal Women With Recurrent Urinary Tract Infection. | Carrie E Jung, Mehrbod Estaki, Jessica Chopyk, Bryn C Taylor, Antonio Gonzalez, Daniel McDonald, Jenny Shin, Kimberly Ferrante, Erika Wasenda, Quinn Lippmann, Rob Knight, David Pride, Emily S Lukacz | Female Pelvic Medicine & Reconstructive Surgery | 2021-05-19 |
| Cross-reactive serum and memory B-cell responses to spike protein in SARS-CoV-2 and endemic coronavirus infection. | Ge Song, Wan-Ting He, Sean Callaghan, Fabio Anzanello, Deli Huang, James Ricketts, Jonathan L Torres, Nathan Beutler, Linghang Peng, Sirena Vargas, Jon Cassell, Mara Parren, Linlin Yang, Caroline Ignacio, Davey M Smith, James E Voss, David Nemazee, Andrew B Ward, Thomas Rogers, Dennis R Burton, Raiees Andrabi | Nature Communications | 2021-05-19 |
| Challenges in benchmarking metagenomic profilers. | Zheng Sun, Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen, Anna Paola Carrieri, Yoshiki Vázquez-Baeza, Laxmi Parida, Ho-Cheol Kim, Rob Knight, Yang-Yu Liu | Nature Methods | 2021-05-13 |
| Dysregulation of Glycerophosphocholines in the Cutaneous Lesion Caused by in Experimental Murine Models. | Adwaita R Parab, Diane Thomas, Sharon Lostracco-Johnson, Jair L Siqueira-Neto, James H McKerrow, Pieter C Dorrestein, Laura-Isobel McCall | Pathogens (Basel, Switzerland) | 2021-05-13 |
| Taxonomic signatures of cause-specific mortality risk in human gut microbiome. | Aaro Salosensaari, Ville Laitinen, Aki S Havulinna, Guillaume Meric, Susan Cheng, Markus Perola, Liisa Valsta, Georg Alfthan, Michael Inouye, Jeramie D Watrous, Tao Long, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Mohit Jain, Pekka Jousilahti, Veikko Salomaa, Rob Knight, Leo Lahti, Teemu Niiranen | Nature Communications | 2021-05-11 |
| Intratumoral bacteria generate a new class of therapeutically relevant tumor antigens in melanoma. | Gregory D Sepich-Poore, Hannah Carter, Rob Knight | Cancer Cell | 2021-05-11 |
| 3D Visualization of Immune Cell Populations in HIV-Infected Tissues via Clearing, Immunostaining, Confocal, and Light Sheet Fluorescence Microscopy. | Tongyu Zhang, Auroni Gupta, Deborah Frederick, Laura Layman, Davey M Smith, Sara Gianella, Collin Kieffer | Journal Of Visualized Experiments : JoVE | 2021-05-06 |
| Insight into the function and evolution of the Wood-Ljungdahl pathway in Actinobacteria. | Jian-Yu Jiao, Li Fu, Zheng-Shuang Hua, Lan Liu, Nimaichand Salam, Peng-Fei Liu, Ai-Ping Lv, Geng Wu, Wen-Dong Xian, Qiyun Zhu, En-Min Zhou, Bao-Zhu Fang, Aharon Oren, Brian P Hedlund, Hong-Chen Jiang, Rob Knight, Lei Cheng, Wen-Jun Li | The ISME Journal | 2021-05-05 |
| METTL3 regulates viral m6A RNA modification and host cell innate immune responses during SARS-CoV-2 infection. | Na Li, Hui Hui, Bill Bray, Gwendolyn Michelle Gonzalez, Mark Zeller, Kristian G Anderson, Rob Knight, Davey Smith, Yinsheng Wang, Aaron F Carlin, Tariq M Rana | Cell Reports | 2021-05-03 |
| Presence of asymptomatic cytomegalovirus and Epstein--Barr virus DNA in blood of persons with HIV starting antiretroviral therapy is associated with non-AIDS clinical events. | Sara Gianella, Carlee Moser, Andrej Vitomirov, Ashley McKhann, Laura Layman, Brianna Scott, Gemma Caballero, Steven Lada, Ronald J Bosch, Martin Hoenigl, Nell Lurain, Alan Landay, Michael M Lederman, Peter W Hunt, Davey Smith | AIDS (London, England) | 2021-05-01 |
| Microbes and Geriatric Mental Health: Past, Present, and Future. | Eleonora D Vaccariello, Tanya T Nguyen | International Psychogeriatrics | 2021-04-30 |
| Gut microbiota through an evolutionary lens. | Rachel N Carmody, Amar Sarkar, Aspen T Reese | Science (New York, N.Y.) | 2021-04-30 |
| Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data. | Lingjing Jiang, Niina Haiminen, Anna-Paola Carrieri, Shi Huang, Yoshiki Vã Zquez-Baeza, Laxmi Parida, Ho-Cheol Kim, Austin D Swafford, Rob Knight, Loki Natarajan | Biometrics | 2021-04-29 |
| Infant Gut Microbiome Is Enriched with Bifidobacteria longumssp. infantisin Old Order Mennoniteswith Traditional Farming Lifestyle. | Antti E Seppo, Kevin Bu, Madina Jumabaeva, Juilee Thakar, RakinA Choudhury, Chloe Yonemitsu, Lars Bode, Camille A Martina, Maria Allen, Sabrina Tamburini, Enrica Piras, David S Wallach, R John Looney, Jose C Clemente, Kirsi M Järvinen | Allergy | 2021-04-27 |
| Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition. | Clarisse Marotz, Kellen J Cavagnero, Se Jin Song, Daniel McDonald, Stephen Wandro, Greg Humphrey, MacKenzie Bryant, Gail Ackermann, Edgar Diaz, Rob Knight | MSystems | 2021-04-27 |
| Grincamycins P-T: Rearranged Angucyclines from the Marine Sediment-Derived sp. CNZ-748 Inhibit Cell Lines of the Rare Cancer Pseudomyxoma Peritonei. | Zhuo Shang, Zachary E Ferris, Douglas Sweeney, Alexander B Chase, Chunhua Yuan, Yvonne Hui, Lukuan Hou, Ethan A Older, Dan Xue, Xiaoyu Tang, Weipeng Zhang, Prakash Nagarkatti, Mitzi Nagarkatti, Traci L Testerman, Paul R Jensen, Jie Li | Journal Of Natural Products | 2021-04-26 |
| Combined analysis of gut microbiota, diet and PNPLA3 polymorphism in biopsy-proven non-alcoholic fatty liver disease. | Sonja Lang, Anna Martin, Xinlian Zhang, Fedja Farowski, Hilmar Wisplinghoff, Maria J G T Vehreschild, Marcin Krawczyk, Angela Nowag, Anne Kretzschmar, Claus Scholz, Philipp Kasper, Christoph Roderburg, Raphael Mohr, Frank Lammert, Frank Tacke, Bernd Schnabl, Tobias Goeser, Hans-Michael Steffen, Münevver Demir | Liver International : Official Journal Of The International Association For The Study Of The Liver | 2021-04-25 |
| The purine nucleoside phosphorylase pnp-1 regulates epithelial cell resistance to infection in C. elegans. | Eillen Tecle, Crystal B Chhan, Latisha Franklin, Ryan S Underwood, Wendy Hanna-Rose, Emily R Troemel | PLoS Pathogens | 2021-04-20 |
| Adjuvanting a subunit COVID-19 vaccine to induce protective immunity. | Prabhu S Arunachalam, Alexandra C Walls, Nadia Golden, Caroline Atyeo, Stephanie Fischinger, Chunfeng Li, Pyone Aye, Mary Jane Navarro, Lilin Lai, Venkata Viswanadh Edara, Katharina Röltgen, Kenneth Rogers, Lisa Shirreff, Douglas E Ferrell, Samuel Wrenn, Deleah Pettie, John C Kraft, Marcos C Miranda, Elizabeth Kepl, Claire Sydeman, Natalie Brunette, Michael Murphy, Brooke Fiala, Lauren Carter, Alexander G White, Meera Trisal, Ching-Lin Hsieh, Kasi Russell-Lodrigue, Christopher Monjure, Jason Dufour, Skye Spencer, Lara Doyle-Meyer, Rudolph P Bohm, Nicholas J Maness, Chad Roy, Jessica A Plante, Kenneth S Plante, Alex Zhu, Matthew J Gorman, Sally Shin, Xiaoying Shen, Jane Fontenot, Shakti Gupta, Derek T O'Hagan, Robbert Van Der Most, Rino Rappuoli, Robert L Coffman, David Novack, Jason S McLellan, Shankar Subramaniam, David Montefiori, Scott D Boyd, JoAnne L Flynn, Galit Alter, Francois Villinger, Harry Kleanthous, Jay Rappaport, Mehul S Suthar, Neil P King, David Veesler, Bali Pulendran | Nature | 2021-04-19 |
| Uremic Toxins in Organ Crosstalk. | Jerome Lowenstein, Sanjay K Nigam | Frontiers In Medicine | 2021-04-16 |
| Ten scientific reasons in support of airborne transmission of SARS-CoV-2. | Trisha Greenhalgh, Jose L Jimenez, Kimberly A Prather, Zeynep Tufekci, David Fisman, Robert Schooley | Lancet (London, England) | 2021-04-15 |
| Urinary microbiota of women with recurrent urinary tract infection: collection and culture methods. | Baylie R Hochstedler, Lindsey Burnett, Travis K Price, Carrie Jung, Alan J Wolfe, Linda Brubaker | International Urogynecology Journal | 2021-04-14 |
| Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection. | Andre Mu, Daniel McDonald, Alan K Jarmusch, Cameron Martino, Caitriona Brennan, Mackenzie Bryant, Gregory C Humphrey, Julia Toronczak, Tara Schwartz, Dominic Nguyen, Gail Ackermann, Anthony D'Onofrio, Steffanie A Strathdee, Robert T Schooley, Pieter C Dorrestein, Rob Knight, Saima Aslam | Microbiome | 2021-04-14 |
| Functional landscape of SARS-CoV-2 cellular restriction. | Laura Martin-Sancho, Mary K Lewinski, Lars Pache, Charlotte A Stoneham, Xin Yin, Mark E Becker, Dexter Pratt, Christopher Churas, Sara B Rosenthal, Sophie Liu, Stuart Weston, Paul D De Jesus, Alan M O'Neill, Anshu P Gounder, Courtney Nguyen, Yuan Pu, Heather M Curry, Aaron L Oom, Lisa Miorin, Ariel Rodriguez-Frandsen, Fan Zheng, Chunxiang Wu, Yong Xiong, Matthew Urbanowski, Megan L Shaw, Max W Chang, Christopher Benner, Thomas J Hope, Matthew B Frieman, Adolfo García-Sastre, Trey Ideker, Judd F Hultquist, John Guatelli, Sumit K Chanda | Molecular Cell | 2021-04-13 |
| Persistent Joint Pain Following Arthropod Virus Infections. | Karol Suchowiecki, St Patrick Reid, Gary L Simon, Gary S Firestein, Aileen Chang | Current Rheumatology Reports | 2021-04-13 |
| MrHAMER yields highly accurate single molecule viral sequences enabling analysis of intra-host evolution. | Christian M Gallardo, Shiyi Wang, Daniel J Montiel-Garcia, Susan J Little, Davey M Smith, Andrew L Routh, Bruce E Torbett | Nucleic Acids Research | 2021-04-13 |
| Structural Characterization of a Minimal Antibody against Human APOBEC3B. | Heng Tang, Özlem Demir, Fredy Kurniawan, William L Brown, Ke Shi, Nicholas H Moeller, Michael A Carpenter, Christopher Belica, Kayo Orellana, Guocheng Du, Aaron M LeBeau, Rommie E Amaro, Reuben S Harris, Hideki Aihara | Viruses | 2021-04-12 |
| Marinoterpins A-C: Rare Linear Merosesterterpenoids from Marine-Derived Actinomycete Bacteria of the Family Streptomycetaceae. | Min Cheol Kim, Jaclyn M Winter, Ratnakar N Asolkar, Chollaratt Boonlarppradab, Reiko Cullum, William Fenical | The Journal Of Organic Chemistry | 2021-04-12 |
| Genetic suppression of lethal mutations in fatty acid biosynthesis mediated by a secondary lipid synthase. | Marco N Allemann, Eric E Allen | Applied And Environmental Microbiology | 2021-04-09 |
| Influence of Intermittent Hypoxia/Hypercapnia on Atherosclerosis, Gut Microbiome, and Metabolome. | Jin Xue, Celeste Allaband, Dan Zhou, Orit Poulsen, Cameron Martino, Lingjing Jiang, Anupriya Tripathi, Emmanuel Elijah, Pieter C Dorrestein, Rob Knight, Amir Zarrinpar, Gabriel G Haddad | Frontiers In Physiology | 2021-04-08 |
| Children with Autism and Their Typically Developing Siblings Differ in Amplicon Sequence Variants and Predicted Functions of Stool-Associated Microbes. | Maude M David, Christine Tataru, Jena Daniels, Jessey Schwartz, Jessica Keating, Jarrad Hampton-Marcell, Neil Gottel, Jack A Gilbert, Dennis P Wall | MSystems | 2021-04-06 |
| Differential T cell reactivity to endemic coronaviruses and SARS-CoV-2 in community and health care workers. | Ricardo da Silva Antunes, Suresh Pallikkuth, Erin Williams, Dawen Yu Esther, Jose Mateus, Lorenzo Quiambao, Eric Wang, Stephen A Rawlings, Daniel Stadlbauer, Kaijun Jiang, Fatima Amanat, David Arnold, David Andrews, Irma Fuego, Jennifer M Dan, Alba Grifoni, Daniela Weiskopf, Florian Krammer, Shane Crotty, Michael E Hoffer, Savita G Pahwa, Alessandro Sette | The Journal Of Infectious Diseases | 2021-04-02 |
| Targeting Biofilm of MDR by Phages Using a Catheter Model. | Chani Rakov, Shira Ben Porat, Sivan Alkalay-Oren, Ortal Yerushalmy, Mohanad Abdalrhman, Niv Gronovich, Lina Huang, David Pride, Shunit Coppenhagen-Glazer, Ran Nir-Paz, Ronen Hazan | Antibiotics (Basel, Switzerland) | 2021-04-02 |
| An Introduction to Next Generation Sequencing Bioinformatic Analysis in Gut Microbiome Studies. | Bei Gao, Liang Chi, Yixin Zhu, Xiaochun Shi, Pengcheng Tu, Bing Li, Jun Yin, Nan Gao, Weishou Shen, Bernd Schnabl | Biomolecules | 2021-04-02 |
| A Clinical-Stage Cysteine Protease Inhibitor blocks SARS-CoV-2 Infection of Human and Monkey Cells. | Drake M Mellott, Chien-Te Tseng, Aleksandra Drelich, Pavla Fajtová, Bala C Chenna, Demetrios H Kostomiris, Jason Hsu, Jiyun Zhu, Zane W Taylor, Klaudia I Kocurek, Vivian Tat, Ardala Katzfuss, Linfeng Li, Miriam A Giardini, Danielle Skinner, Ken Hirata, Michael C Yoon, Sungjun Beck, Aaron F Carlin, Alex E Clark, Laura Beretta, Daniel Maneval, Vivian Hook, Felix Frueh, Brett L Hurst, Hong Wang, Frank M Raushel, Anthony J O'Donoghue, Jair Lage de Siqueira-Neto, Thomas D Meek, James H McKerrow | ACS Chemical Biology | 2021-03-31 |
| Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States. | Nicole L Washington, Karthik Gangavarapu, Mark Zeller, Alexandre Bolze, Elizabeth T Cirulli, Kelly M Schiabor Barrett, Brendan B Larsen, Catelyn Anderson, Simon White, Tyler Cassens, Sharoni Jacobs, Geraint Levan, Jason Nguyen, Jimmy M Ramirez, Charlotte Rivera-Garcia, Efren Sandoval, Xueqing Wang, David Wong, Emily Spencer, Refugio Robles-Sikisaka, Ezra Kurzban, Laura D Hughes, Xianding Deng, Candace Wang, Venice Servellita, Holly Valentine, Peter De Hoff, Phoebe Seaver, Shashank Sathe, Kimberly Gietzen, Brad Sickler, Jay Antico, Kelly Hoon, Jingtao Liu, Aaron Harding, Omid Bakhtar, Tracy Basler, Brett Austin, Duncan MacCannell, Magnus Isaksson, Phillip G Febbo, David Becker, Marc Laurent, Eric McDonald, Gene W Yeo, Rob Knight, Louise C Laurent, Eileen de Feo, Michael Worobey, Charles Y Chiu, Marc A Suchard, James T Lu, William Lee, Kristian G Andersen | Cell | 2021-03-30 |
| Thousands of previously unknown phages discovered in whole-community human gut metagenomes. | Sean Benler, Natalya Yutin, Dmitry Antipov, Mikhail Rayko, Sergey Shmakov, Ayal B Gussow, Pavel Pevzner, Eugene V Koonin | Microbiome | 2021-03-29 |
| Effects of processed meat and drinking water nitrate on oral and fecal microbial populations in a controlled feeding study. | Rashmi Sinha, Ni Zhao, James J Goedert, Doratha A Byrd, Yunhu Wan, Xing Hua, Autumn G Hullings, Rob Knight, Simone van Breda, Karen Mathijs, Theo M de Kok, Mary H Ward, | Environmental Research | 2021-03-27 |
| The oncogene AAMDC links PI3K-AKT-mTOR signaling with metabolic reprograming in estrogen receptor-positive breast cancer. | Emily Golden, Rabab Rashwan, Eleanor A Woodward, Agustin Sgro, Edina Wang, Anabel Sorolla, Charlene Waryah, Wan Jun Tie, Elisabet Cuyàs, Magdalena Ratajska, Iwona Kardaś, Piotr Kozlowski, Elizabeth K M Johnstone, Heng B See, Ciara Duffy, Jeremy Parry, Kim A Lagerborg, Piotr Czapiewski, Javier A Menendez, Adam Gorczyński, Bartosz Wasag, Kevin D G Pfleger, Christina Curtis, Bum-Kyu Lee, Jonghwan Kim, Joseph Cursons, Nathan J Pavlos, Wojciech Biernat, Mohit Jain, Andrew J Woo, Andrew Redfern, Pilar Blancafort | Nature Communications | 2021-03-26 |
| The microbiome and human cancer. | Gregory D Sepich-Poore, Laurence Zitvogel, Ravid Straussman, Jeff Hasty, Jennifer A Wargo, Rob Knight | Science (New York, N.Y.) | 2021-03-26 |
| Comparison of Two Approaches for the Metataxonomic Analysis of the Human Milk Microbiome. | Lorena Ruiz, Claudio Alba, Cristina García-Carral, Esther A Jiménez, Kimberly A Lackey, Michelle K McGuire, Courtney L Meehan, James Foster, Daniel W Sellen, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Samwel Mbugua, Sophie E Moore, Andrew M Prentice, Debela Gindola K, Gloria E Otoo, Rossina G Pareja, Lars Bode, Mark A McGuire, Janet E Williams, Juan M Rodríguez | Frontiers In Cellular And Infection Microbiology | 2021-03-25 |
| Association of Loneliness and Wisdom With Gut Microbial Diversity and Composition: An Exploratory Study. | Tanya T Nguyen, Xinlian Zhang, Tsung-Chin Wu, Jinyuan Liu, Collin Le, Xin M Tu, Rob Knight, Dilip V Jeste | Frontiers In Psychiatry | 2021-03-25 |
| Tandem Fluorescence Measurements of Organic Matter and Bacteria Released in Sea Spray Aerosols. | Mitchell V Santander, Brock A Mitts, Matthew A Pendergraft, Julie Dinasquet, Christopher Lee, Alexia N Moore, Lucia B Cancelada, Ke'La A Kimble, Francesca Malfatti, Kimberly A Prather | Environmental Science & Technology | 2021-03-23 |
| Renal and non-renal response of ABC and SLC transporters in chronic kidney disease. | Adriana M Torres, Ankur V Dnyanmote, Jeffry C Granados, Sanjay K Nigam | Expert Opinion On Drug Metabolism & Toxicology | 2021-03-22 |
| Driving to Safety: CRISPR-Based Genetic Approaches to Reducing Antibiotic Resistance. | Ethan Bier, Victor Nizet | Trends In Genetics : TIG | 2021-03-18 |
| Author Correction: Gut microbiome pattern reflects healthy ageing and predicts survival in humans. | Tomasz Wilmanski, Christian Diener, Noa Rappaport, Sushmita Patwardhan, Jack Wiedrick, Jodi Lapidus, John C Earls, Anat Zimmer, Gustavo Glusman, Max Robinson, James T Yurkovich, Deborah M Kado, Jane A Cauley, Joseph Zmuda, Nancy E Lane, Andrew T Magis, Jennifer C Lovejoy, Leroy Hood, Sean M Gibbons, Eric S Orwoll, Nathan D Price | Nature Metabolism | 2021-03-18 |
| EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets. | Kalen Cantrell, Marcus W Fedarko, Gibraan Rahman, Daniel McDonald, Yimeng Yang, Thant Zaw, Antonio Gonzalez, Stefan Janssen, Mehrbod Estaki, Niina Haiminen, Kristen L Beck, Qiyun Zhu, Erfan Sayyari, James T Morton, George Armstrong, Anupriya Tripathi, Julia M Gauglitz, Clarisse Marotz, Nathaniel L Matteson, Cameron Martino, Jon G Sanders, Anna Paola Carrieri, Se Jin Song, Austin D Swafford, Pieter C Dorrestein, Kristian G Andersen, Laxmi Parida, Ho-Cheol Kim, Yoshiki Vázquez-Baeza, Rob Knight | MSystems | 2021-03-16 |
| A Cyanobacterial Component Required for Pilus Biogenesis Affects the Exoproteome. | Yevgeni Yegorov, Eleonora Sendersky, Shaul Zilberman, Elad Nagar, Hiba Waldman Ben-Asher, Eyal Shimoni, Ryan Simkovsky, Susan S Golden, Andy LiWang, Rakefet Schwarz | MBio | 2021-03-16 |
| SARS-CoV-2 Screening Among Symptom-Free Healthcare Workers. | Ryan T Demmer, Angela K Ulrich, Talia D Wiggen, Ali Strickland, Brianna M Naumchik, Shalini Kulasingam, Steven D Stovitz, Clarisse Marotz, Pedro Belda-Ferre, Greg Humphrey, Peter De Hoff, Louise Laurent, Susan Kline, Rob Knight | Infection Control And Hospital Epidemiology | 2021-03-12 |
| Pharmacokinetics and Safety of Single-dose Tedizolid Phosphate in Children 2 to <12 Years of Age. | Antonio C Arrieta, Jocelyn Y Ang, Claudia Espinosa, Oleksandr Fofanov, Camilla Tøndel, Margaret Z Chou, Carisa S De Anda, Jason Y Kim, Dan Li, Philip Sabato, Pamela S Sears, John S Bradley | The Pediatric Infectious Disease Journal | 2021-03-12 |
| Cardiac Rehab in the COVID Era and Beyond: mHealth and Other Novel Opportunities. | Elizabeth Epstein, Neeja Patel, Kathryn Maysent, Pam R Taub | Current Cardiology Reports | 2021-03-11 |
| Dietary factors, gut microbiota, and serum trimethylamine-N-oxide associated with cardiovascular disease in the Hispanic Community Health Study/Study of Latinos. | Zhendong Mei, Guo-Chong Chen, Zheng Wang, Mykhaylo Usyk, Bing Yu, Yoshiki Vazquez Baeza, Greg Humphrey, Rodolfo Salido Benitez, Jun Li, Jessica S Williams-Nguyen, Martha L Daviglus, Lifang Hou, Jianwen Cai, Yan Zheng, Rob Knight, Robert D Burk, Eric Boerwinkle, Robert C Kaplan, Qibin Qi | The American Journal Of Clinical Nutrition | 2021-03-11 |
| Conjugation to Enterobactin and Salmochelin S4 Enhances the Antimicrobial Activity and Selectivity of β-Lactam Antibiotics against Nontyphoidal . | Artur Sargun, Martina Sassone-Corsi, Tengfei Zheng, Manuela Raffatellu, Elizabeth M Nolan | ACS Infectious Diseases | 2021-03-10 |
| Exploring the Composition and Functions of Plastic Microbiome Using Whole-Genome Sequencing. | Geetika Bhagwat, Qiyun Zhu, Wayne O'Connor, Suresh Subashchandrabose, Ian Grainge, Rob Knight, Thava Palanisami | Environmental Science & Technology | 2021-03-09 |
| Staphylococcus aureus Enters Hair Follicles Using Triacylglycerol Lipases Preserved through the Genus Staphylococcus. | Kouki Nakamura, Michael R Williams, Jakub M Kwiecinski, Alexander R Horswill, Richard L Gallo | The Journal Of Investigative Dermatology | 2021-03-09 |
| Disease-related mutations in PI3Kγ disrupt regulatory C-terminal dynamics and reveal a path to selective inhibitors. | Manoj K Rathinaswamy, Zied Gaieb, Kaelin D Fleming, Chiara Borsari, Noah J Harris, Brandon E Moeller, Matthias P Wymann, Rommie E Amaro, John E Burke | ELife | 2021-03-04 |
| Proton pump inhibitor use status does not modify the microbiome signature for cirrhosis. | Tae Gyu Oh, Susy M Kim, Annette R Atkins, Ruth T Yu, Michael Downes, Ronald M Evans, Rohit Loomba | Cell Metabolism | 2021-03-03 |
| High-Throughput Wastewater SARS-CoV-2 Detection Enables Forecasting of Community Infection Dynamics in San Diego County. | Smruthi Karthikeyan, Nancy Ronquillo, Pedro Belda-Ferre, Destiny Alvarado, Tara Javidi, Christopher A Longhurst, Rob Knight | MSystems | 2021-03-02 |
| Links between gut microbiome composition and fatty liver disease in a large population sample. | Matti O Ruuskanen, Fredrik Åberg, Ville Männistö, Aki S Havulinna, Guillaume Méric, Yang Liu, Rohit Loomba, Yoshiki Vázquez-Baeza, Anupriya Tripathi, Liisa M Valsta, Michael Inouye, Pekka Jousilahti, Veikko Salomaa, Mohit Jain, Rob Knight, Leo Lahti, Teemu J Niiranen | Gut Microbes | 2021-03-02 |
| Gut microbiota dysbiosis is associated with worse emotional states in HIV infection. | Josué Pérez-Santiago, María J Marquine, Debralee Cookson, Rafael Giraud-Colón, Robert K Heaton, Igor Grant, Ronald J Ellis, Scott L Letendre, Scott N Peterson | Journal Of Neurovirology | 2021-03-02 |
| Bcl6-Mediated Transcriptional Regulation of Follicular Helper T cells (T). | Jinyong Choi, Shane Crotty | Trends In Immunology | 2021-03-01 |
| Dissociation of DNA damage sensing by endoglycosidase HPSE. | Alex Agelidis, Rahul K Suryawanshi, Chandrashekhar D Patil, Anaamika Campeau, David J Gonzalez, Deepak Shukla | IScience | 2021-02-27 |
| Hitting the diagnostic sweet spot: Point-of-care SARS-CoV-2 salivary antigen testing with an off-the-shelf glucometer. | Naveen K Singh, Partha Ray, Aaron F Carlin, Celestine Magallanes, Sydney C Morgan, Louise C Laurent, Eliah S Aronoff-Spencer, Drew A Hall | Biosensors & Bioelectronics | 2021-02-26 |
| Associations of fecal microbial profiles with breast cancer and nonmalignant breast disease in the Ghana Breast Health Study. | Doratha A Byrd, Emily Vogtmann, Zeni Wu, Yongli Han, Yunhu Wan, Joe-Nat Clegg-Lamptey, Joel Yarney, Beatrice Wiafe-Addai, Seth Wiafe, Baffour Awuah, Daniel Ansong, Kofi Nyarko, Autumn G Hullings, Xing Hua, Thomas Ahearn, James J Goedert, Jianxin Shi, Rob Knight, Jonine D Figueroa, Louise A Brinton, Montserrat Garcia-Closas, Rashmi Sinha | International Journal Of Cancer | 2021-02-26 |
| Identification of an N-acetylneuraminic acid-presenting bacteria isolated from a human microbiome. | Zhen Han, Peter S Thuy-Boun, Wayne Pfeiffer, Vincent F Vartabedian, Ali Torkamani, John R Teijaro, Dennis W Wolan | Scientific Reports | 2021-02-26 |
| The Molecular Basis for Life in Extreme Environments. | Nozomi Ando, Blanca Barquera, Douglas H Bartlett, Eric Boyd, Audrey A Burnim, Amanda S Byer, Daniel Colman, Richard E Gillilan, Martin Gruebele, George Makhatadze, Catherine A Royer, Everett Shock, A Joshua Wand, Maxwell B Watkins | Annual Review Of Biophysics | 2021-02-26 |
| Genomic relatedness and clinical significance of strains isolated from the urogenital tract of sexual partners. | Carine R Mores, Travis K Price, Birte Wolff, Thomas Halverson, Roberto Limeira, Linda Brubaker, Elizabeth R Mueller, Catherine Putonti, Alan J Wolfe | Microbial Genomics | 2021-02-25 |
| Searching for host immune-microbiome mechanisms in obsessive-compulsive disorder: A narrative literature review and future directions. | Emily A Troyer, Jordan N Kohn, Gertrude Ecklu-Mensah, Gajender Aleti, David R Rosenberg, Suzi Hong | Neuroscience And Biobehavioral Reviews | 2021-02-24 |
| The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection. | Fatemeh Askarian, Satoshi Uchiyama, Helen Masson, Henrik Vinther Sørensen, Ole Golten, Anne Cathrine Bunæs, Sophanit Mekasha, Åsmund Kjendseth Røhr, Eirik Kommedal, Judith Anita Ludviksen, Magnus Ø Arntzen, Benjamin Schmidt, Raymond H Zurich, Nina M van Sorge, Vincent G H Eijsink, Ute Krengel, Tom Eirik Mollnes, Nathan E Lewis, Victor Nizet, Gustav Vaaje-Kolstad | Nature Communications | 2021-02-23 |
| Intestinal α1-2-Fucosylation Contributes to Obesity and Steatohepatitis in Mice. | Rongrong Zhou, Cristina Llorente, Jinling Cao, Livia S Zaramela, Suling Zeng, Bei Gao, Shang-Zhen Li, Ryan D Welch, Feng-Qing Huang, Lian-Wen Qi, Chuyue Pan, Yan Huang, Pengchen Zhou, Iris Beussen, Ying Zhang, Gregory Bryam, Oliver Fiehn, Lirui Wang, E-Hu Liu, Ruth T Yu, Michael Downes, Ronald M Evans, Karrie Goglin, Derrick E Fouts, David A Brenner, Lars Bode, Xuegong Fan, Karsten Zengler, Bernd Schnabl | Cellular And Molecular Gastroenterology And Hepatology | 2021-02-22 |
| Development of a human skin commensal microbe for bacteriotherapy of atopic dermatitis and use in a phase 1 randomized clinical trial. | Teruaki Nakatsuji, Tissa R Hata, Yun Tong, Joyce Y Cheng, Faiza Shafiq, Anna M Butcher, Secilia S Salem, Samantha L Brinton, Amanda K Rudman Spergel, Keli Johnson, Brett Jepson, Agustin Calatroni, Gloria David, Marco Ramirez-Gama, Patricia Taylor, Donald Y M Leung, Richard L Gallo | Nature Medicine | 2021-02-22 |
| RAMIC: Design of a randomized, double-blind, placebo-controlled trial to evaluate the efficacy of ramipril in patients with COVID-19. | Veeral Ajmera, Wesley K Thompson, Davey M Smith, Atul Malhotra, Ravindra L Mehta, Vaishal Tolia, Jeffrey Yin, Krishna Sriram, Paul A Insel, Summer Collier, Lisa Richards, Rohit Loomba | Contemporary Clinical Trials | 2021-02-22 |
| Carbohydrates great and small, from dietary fiber to sialic acids: How glycans influence the gut microbiome and affect human health. | Joanna K Coker, Oriane Moyne, Dmitry A Rodionov, Karsten Zengler | Gut Microbes | 2021-02-22 |
| Open Science Resources for the Mass Spectrometry-Based Analysis of SARS-CoV-2. | Wout Bittremieux, Charlotte Adams, Kris Laukens, Pieter C Dorrestein, Nuno Bandeira | Journal Of Proteome Research | 2021-02-19 |
| Sensitivity of the mangrove-estuarine microbial community to aquaculture effluent. | Natalia G Erazo, Jeff S Bowman | IScience | 2021-02-18 |
| Gut microbiome pattern reflects healthy ageing and predicts survival in humans. | Tomasz Wilmanski, Christian Diener, Noa Rappaport, Sushmita Patwardhan, Jack Wiedrick, Jodi Lapidus, John C Earls, Anat Zimmer, Gustavo Glusman, Max Robinson, James T Yurkovich, Deborah M Kado, Jane A Cauley, Joseph Zmuda, Nancy E Lane, Andrew T Magis, Jennifer C Lovejoy, Leroy Hood, Sean M Gibbons, Eric S Orwoll, Nathan D Price | Nature Metabolism | 2021-02-18 |
| A community resource for paired genomic and metabolomic data mining. | Michelle A Schorn, Stefan Verhoeven, Lars Ridder, Florian Huber, Deepa D Acharya, Alexander A Aksenov, Gajender Aleti, Jamshid Amiri Moghaddam, Allegra T Aron, Saefuddin Aziz, Anelize Bauermeister, Katherine D Bauman, Martin Baunach, Christine Beemelmanns, J Michael Beman, María Victoria Berlanga-Clavero, Alex A Blacutt, Helge B Bode, Anne Boullie, Asker Brejnrod, Tim S Bugni, Alexandra Calteau, Liu Cao, Víctor J Carrión, Raquel Castelo-Branco, Shaurya Chanana, Alexander B Chase, Marc G Chevrette, Leticia V Costa-Lotufo, Jason M Crawford, Cameron R Currie, Bart Cuypers, Tam Dang, Tristan de Rond, Alyssa M Demko, Elke Dittmann, Chao Du, Christopher Drozd, Jean-Claude Dujardin, Rachel J Dutton, Anna Edlund, David P Fewer, Neha Garg, Julia M Gauglitz, Emily C Gentry, Lena Gerwick, Evgenia Glukhov, Harald Gross, Muriel Gugger, Dulce G Guillén Matus, Eric J N Helfrich, Benjamin-Florian Hempel, Jae-Seoun Hur, Marianna Iorio, Paul R Jensen, Kyo Bin Kang, Leonard Kaysser, Neil L Kelleher, Chung Sub Kim, Ki Hyun Kim, Irina Koester, Gabriele M König, Tiago Leao, Seoung Rak Lee, Yi-Yuan Lee, Xuanji Li, Jessica C Little, Katherine N Maloney, Daniel Männle, Christian Martin H, Andrew C McAvoy, Willam W Metcalf, Hosein Mohimani, Carlos Molina-Santiago, Bradley S Moore, Michael W Mullowney, Mitchell Muskat, Louis-Félix Nothias, Ellis C O'Neill, Elizabeth I Parkinson, Daniel Petras, Jörn Piel, Emily C Pierce, Karine Pires, Raphael Reher, Diego Romero, M Caroline Roper, Michael Rust, Hamada Saad, Carmen Saenz, Laura M Sanchez, Søren Johannes Sørensen, Margherita Sosio, Roderich D Süssmuth, Douglas Sweeney, Kapil Tahlan, Regan J Thomson, Nicholas J Tobias, Amaro E Trindade-Silva, Gilles P van Wezel, Mingxun Wang, Kelly C Weldon, Fan Zhang, Nadine Ziemert, Katherine R Duncan, Max Crüsemann, Simon Rogers, Pieter C Dorrestein, Marnix H Medema, Justin J J van der Hooft | Nature Chemical Biology | 2021-02-17 |
| Quantifying Live Microbial Load in Human Saliva Samples over Time Reveals Stable Composition and Dynamic Load. | Clarisse Marotz, James T Morton, Perris Navarro, Joanna Coker, Pedro Belda-Ferre, Rob Knight, Karsten Zengler | MSystems | 2021-02-16 |
| Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus. | St Elmo Wilken, Jonathan M Monk, Patrick A Leggieri, Christopher E Lawson, Thomas S Lankiewicz, Susanna Seppälä, Chris G Daum, Jerry Jenkins, Anna M Lipzen, Stephen J Mondo, Kerrie W Barry, Igor V Grigoriev, John K Henske, Michael K Theodorou, Bernhard O Palsson, Linda R Petzold, Michelle A O'Malley | MSystems | 2021-02-16 |
| Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features. | Natalya Yutin, Sean Benler, Sergei A Shmakov, Yuri I Wolf, Igor Tolstoy, Mike Rayko, Dmitry Antipov, Pavel A Pevzner, Eugene V Koonin | Nature Communications | 2021-02-16 |
| Fungi-Bacteria Correlation in Alcoholic Hepatitis Patients. | Bei Gao, Xinlian Zhang, Bernd Schnabl | Toxins | 2021-02-14 |
| Seroprevalence of antibodies to SARS-CoV-2 in healthcare workers: a cross-sectional study. | Joseph E Ebinger, Gregory J Botwin, Christine M Albert, Mona Alotaibi, Moshe Arditi, Anders H Berg, Aleksandra Binek, Patrick Botting, Justyna Fert-Bober, Jane C Figueiredo, Jonathan D Grein, Wohaib Hasan, Mir Henglin, Shehnaz K Hussain, Mohit Jain, Sandy Joung, Michael Karin, Elizabeth H Kim, Dalin Li, Yunxian Liu, Eric Luong, Dermot P B McGovern, Akil Merchant, Noah Merin, Peggy B Miles, Margo Minissian, Trevor Trung Nguyen, Koen Raedschelders, Mohamad A Rashid, Celine E Riera, Richard V Riggs, Sonia Sharma, Sarah Sternbach, Nancy Sun, Warren G Tourtellotte, Jennifer E Van Eyk, Kimia Sobhani, Jonathan G Braun, Susan Cheng | BMJ Open | 2021-02-12 |
| Revealing Tissue-Specific SARS-CoV-2 Infection and Host Responses using Human Stem Cell-Derived Lung and Cerebral Organoids. | Shashi Kant Tiwari, Shaobo Wang, Davey Smith, Aaron F Carlin, Tariq M Rana | Stem Cell Reports | 2021-02-12 |
| Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly. | Mahul Chakraborty, Arunachalam Ramaiah, Adriana Adolfi, Paige Halas, Bhagyashree Kaduskar, Luna Thanh Ngo, Suvratha Jayaprasad, Kiran Paul, Saurabh Whadgar, Subhashini Srinivasan, Suresh Subramani, Ethan Bier, Anthony A James, J J Emerson | BMC Biology | 2021-02-10 |
| Human Milk-Fed Piglets Have a Distinct Small Intestine and Circulatory Metabolome Profile Relative to That of Milk Formula-Fed Piglets. | Fernanda Rosa, Katelin S Matazel, Ahmed A Elolimy, Sean H Adams, Anne Bowlin, Keith D Williams, Lars Bode, Laxmi Yeruva | MSystems | 2021-02-09 |
| Functional Restoration of Bacteriomes and Viromes by Fecal Microbiota Transplantation. | Kosuke Fujimoto, Yasumasa Kimura, Jessica R Allegretti, Mako Yamamoto, Yao-Zhong Zhang, Kotoe Katayama, Georg Tremmel, Yunosuke Kawaguchi, Masaki Shimohigoshi, Tetsuya Hayashi, Miho Uematsu, Kiyoshi Yamaguchi, Yoichi Furukawa, Yutaka Akiyama, Rui Yamaguchi, Sheila E Crowe, Peter B Ernst, Satoru Miyano, Hiroshi Kiyono, Seiya Imoto, Satoshi Uematsu | Gastroenterology | 2021-02-09 |
| Whole genome sequencing identifies novel genetic mutations in patients with eczema herpeticum. | Lianghua Bin, Claire Malley, Patricia Taylor, Meher Preethi Boorgula, Sameer Chavan, Michelle Daya, Malaika Mathias, Gautam Shankar, Nicholas Rafaels, Candelaria Vergara, Joseph Potee, Monica Campbell, Jon M Hanifin, Eric Simpson, Lynda C Schneider, Richard L Gallo, Tissa Hata, Amy S Paller, Anna De Benedetto, Lisa A Beck, Peck Y Ong, Emma Guttman-Yassky, Brittany Richers, David Baraghoshi, Ingo Ruczinski, Kathleen C Barnes, Donald Y M Leung, Rasika A Mathias | Allergy | 2021-02-06 |
| The sum is greater than the parts: exploiting microbial communities to achieve complex functions. | Livia S Zaramela, Oriane Moyne, Manish Kumar, Cristal Zuniga, Juan D Tibocha-Bonilla, Karsten Zengler | Current Opinion In Biotechnology | 2021-02-06 |
| Change in Fibrosis 4 Index as Predictor of High Risk of Incident Hepatocellular Carcinoma After Eradication of Hepatitis C Virus. | Nobuharu Tamaki, Masayuki Kurosaki, Yutaka Yasui, Nami Mori, Keiji Tsuji, Chitomi Hasebe, Koji Joko, Takehiro Akahane, Koichiro Furuta, Haruhiko Kobashi, Hiroyuki Kimura, Hitoshi Yagisawa, Hiroyuki Marusawa, Masahiko Kondo, Yuji Kojima, Hideo Yoshida, Yasushi Uchida, Rohit Loomba, Namiki Izumi | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-02-05 |
| Breastfeed or be vaccinated-an unreasonable default recommendation. | Anne Merewood, Lars Bode, Riccardo Davanzo, Rafael Perez-Escamilla | Lancet (London, England) | 2021-02-04 |
| Current state of athalassohaline deep-sea hypersaline anoxic basin research-recommendations for future work and relevance to astrobiology. | Luke A Fisher, Alexandra Pontefract, Sanjoy M Som, Christopher E Carr, Benjamin Klempay, Britney E Schmidt, Jeff S Bowman, Douglas H Bartlett | Environmental Microbiology | 2021-02-04 |
| Decade-scale stability and change in a marine bivalve microbiome. | Alexander T Neu, Ian V Hughes, Eric E Allen, Kaustuv Roy | Molecular Ecology | 2021-02-02 |
| Apurinic/Apyrimidinic Endonuclease 1 Restricts the Internalization of Bacteria Into Human Intestinal Epithelial Cells Through the Inhibition of Rac1. | Gerco den Hartog, Lindsay D Butcher, Amber L Ablack, Laura A Pace, Jailal N G Ablack, Richard Xiong, Soumita Das, Thaddeus S Stappenbeck, Lars Eckmann, Peter B Ernst, Sheila E Crowe | Frontiers In Immunology | 2021-02-02 |
| Microbiota control of maternal behavior regulates early postnatal growth of offspring. | Yujung Michelle Lee, Andre Mu, Martina Wallace, Jivani M Gengatharan, Annalee J Furst, Lars Bode, Christian M Metallo, Janelle S Ayres | Science Advances | 2021-01-29 |
| A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities. | Justin P Shaffer, Clarisse Marotz, Pedro Belda-Ferre, Cameron Martino, Stephen Wandro, Mehrbod Estaki, Rodolfo A Salido, Carolina S Carpenter, Livia S Zaramela, Jeremiah J Minich, MacKenzie Bryant, Karenina Sanders, Serena Fraraccio, Gail Ackermann, Gregory Humphrey, Austin D Swafford, Sandrine Miller-Montgomery, Rob Knight | BioTechniques | 2021-01-29 |
| Identifying COVID-19 Cases and Social Groups at High Risk of Transmission: A Strategy to Reduce Community Spread. | Robert A Gunn, John Bellettiere, Richard S Garfein, Kanya C Long, Nancy J Binkin, Cheryl A M Anderson | Public Health Reports (Washington, D.C. : 1974) | 2021-01-28 |
| First report on prevalence of SARS-CoV-2 infection among health-care workers in Nicaragua. | Jorge A Huete-Pérez, Cristiana Cabezas-Robelo, Lucía Páiz-Medina, Carlos A Hernández-Álvarez, Carlos Quant-Durán, James H McKerrow | PloS One | 2021-01-27 |
| More than a Pore: Nonlytic Antimicrobial Functions of Complement and Bacterial Strategies for Evasion. | Elisabet Bjanes, Victor Nizet | Microbiology And Molecular Biology Reviews : MMBR | 2021-01-27 |
| Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases. | Alison Tarke, John Sidney, Conner K Kidd, Jennifer M Dan, Sydney I Ramirez, Esther Dawen Yu, Jose Mateus, Ricardo da Silva Antunes, Erin Moore, Paul Rubiro, Nils Methot, Elizabeth Phillips, Simon Mallal, April Frazier, Stephen A Rawlings, Jason A Greenbaum, Bjoern Peters, Davey M Smith, Shane Crotty, Daniela Weiskopf, Alba Grifoni, Alessandro Sette | Cell Reports. Medicine | 2021-01-26 |
| Absence of CCR2 reduces spontaneous intestinal tumorigenesis in the Apc mouse model. | Venkatakrishna Rao Jala, Sobha Rani Bodduluri, Sweta Ghosh, Zinal Chheda, Rajbir Singh, Michelle E Smith, Paula M Chilton, Christopher J Fleming, Steven Paul Mathis, Rajesh Kumar Sharma, Rob Knight, Jun Yan, Bodduluri Haribabu | International Journal Of Cancer | 2021-01-26 |
| Pangenome Analytics Reveal Two-Component Systems as Conserved Targets in ESKAPEE Pathogens. | Akanksha Rajput, Yara Seif, Kumari Sonal Choudhary, Christopher Dalldorf, Saugat Poudel, Jonathan M Monk, Bernhard O Palsson | MSystems | 2021-01-26 |
| Asymmetrizing an icosahedral virus capsid by hierarchical assembly of subunits with designed asymmetry. | Zhongchao Zhao, Joseph Che-Yen Wang, Mi Zhang, Nicholas A Lyktey, Martin F Jarrold, Stephen C Jacobson, Adam Zlotnick | Nature Communications | 2021-01-26 |
| Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. | Jeremiah J Minich, Farhana Ali, Clarisse Marotz, Pedro Belda-Ferre, Leslie Chiang, Justin P Shaffer, Carolina S Carpenter, Daniel McDonald, Jack Gilbert, Sarah M Allard, Eric E Allen, Rob Knight, Daniel A Sweeney, Austin D Swafford | Microbiome | 2021-01-22 |
| Obesogenic Programming Effects during Lactation: A Narrative Review and Conceptual Model Focusing on Underlying Mechanisms and Promising Future Research Avenues. | Junilla K Larsen, Lars Bode | Nutrients | 2021-01-21 |
| Bacterial fitness landscapes stratify based on proteome allocation associated with discrete aero-types. | Ke Chen, Amitesh Anand, Connor Olson, Troy E Sandberg, Ye Gao, Nathan Mih, Bernhard O Palsson | PLoS Computational Biology | 2021-01-19 |
| Exploring the Impact of Ketodeoxynonulosonic Acid in Host-Pathogen Interactions Using Uptake and Surface Display by Nontypeable Haemophilus influenzae. | Sudeshna Saha, Alison Coady, Aniruddha Sasmal, Kunio Kawanishi, Biswa Choudhury, Hai Yu, Ricardo U Sorensen, Jaime Inostroza, Ian C Schoenhofen, Xi Chen, Anja Münster-Kühnel, Chihiro Sato, Ken Kitajima, Sanjay Ram, Victor Nizet, Ajit Varki | MBio | 2021-01-19 |
| Large-scale association analyses identify host factors influencing human gut microbiome composition. | Alexander Kurilshikov, Carolina Medina-Gomez, Rodrigo Bacigalupe, Djawad Radjabzadeh, Jun Wang, Ayse Demirkan, Caroline I Le Roy, Juan Antonio Raygoza Garay, Casey T Finnicum, Xingrong Liu, Daria V Zhernakova, Marc Jan Bonder, Tue H Hansen, Fabian Frost, Malte C Rühlemann, Williams Turpin, Jee-Young Moon, Han-Na Kim, Kreete Lüll, Elad Barkan, Shiraz A Shah, Myriam Fornage, Joanna Szopinska-Tokov, Zachary D Wallen, Dmitrii Borisevich, Lars Agreus, Anna Andreasson, Corinna Bang, Larbi Bedrani, Jordana T Bell, Hans Bisgaard, Michael Boehnke, Dorret I Boomsma, Robert D Burk, Annique Claringbould, Kenneth Croitoru, Gareth E Davies, Cornelia M van Duijn, Liesbeth Duijts, Gwen Falony, Jingyuan Fu, Adriaan van der Graaf, Torben Hansen, Georg Homuth, David A Hughes, Richard G Ijzerman, Matthew A Jackson, Vincent W V Jaddoe, Marie Joossens, Torben Jørgensen, Daniel Keszthelyi, Rob Knight, Markku Laakso, Matthias Laudes, Lenore J Launer, Wolfgang Lieb, Aldons J Lusis, Ad A M Masclee, Henriette A Moll, Zlatan Mujagic, Qi Qibin, Daphna Rothschild, Hocheol Shin, Søren J Sørensen, Claire J Steves, Jonathan Thorsen, Nicholas J Timpson, Raul Y Tito, Sara Vieira-Silva, Uwe Völker, Henry Völzke, Urmo Võsa, Kaitlin H Wade, Susanna Walter, Kyoko Watanabe, Stefan Weiss, Frank U Weiss, Omer Weissbrod, Harm-Jan Westra, Gonneke Willemsen, Haydeh Payami, Daisy M A E Jonkers, Alejandro Arias Vasquez, Eco J C de Geus, Katie A Meyer, Jakob Stokholm, Eran Segal, Elin Org, Cisca Wijmenga, Hyung-Lae Kim, Robert C Kaplan, Tim D Spector, Andre G Uitterlinden, Fernando Rivadeneira, Andre Franke, Markus M Lerch, Lude Franke, Serena Sanna, Mauro D'Amato, Oluf Pedersen, Andrew D Paterson, Robert Kraaij, Jeroen Raes, Alexandra Zhernakova | Nature Genetics | 2021-01-18 |
| Airborne Transmission of SARS-CoV-2: What We Know. | Jonathan M Samet, Kimberly Prather, Georges Benjamin, Seema Lakdawala, John-Martin Lowe, Arthur Reingold, John Volckens, Linsey Marr | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2021-01-18 |
| Microbiome Signatures in a Fast- and Slow-Progressing Gastric Cancer Murine Model and Their Contribution to Gastric Carcinogenesis. | Prerna Bali, Joanna Coker, Ivonne Lozano-Pope, Karsten Zengler, Marygorret Obonyo | Microorganisms | 2021-01-17 |
| Novel Models of Colonization and Disease Reveal Modest Contributions of M-Like (SCM) Protein. | Ingrid Cornax, Jacob Zulk, Joshua Olson, Marcus Fulde, Victor Nizet, Kathryn A Patras | Microorganisms | 2021-01-16 |
| Differential T cell reactivity to seasonal coronaviruses and SARS-CoV-2 in community and health care workers. | Ricardo da Silva Antunes, Suresh Pallikkuth, Erin Williams, Esther Dawen Yu, Jose Mateus, Lorenzo Quiambao, Eric Wang, Stephen A Rawlings, Daniel Stadlbauer, Kaijun Jiang, Fatima Amanat, David Arnold, David Andrews, Irma Fuego, Jennifer M Dan, Alba Grifoni, Daniela Weiskopf, Florian Krammer, Shane Crotty, Michael E Hoffer, Savita G Pahwa, Alessandro Sette | MedRxiv : The Preprint Server For Health Sciences | 2021-01-15 |
| New Developments in Microbiome in Alcohol-Associated and Nonalcoholic Fatty Liver Disease. | Phillipp Hartmann, Bernd Schnabl | Seminars In Liver Disease | 2021-01-14 |
| A Novel N4-Like Bacteriophage Isolated from a Wastewater Source in South India with Activity against Several Multidrug-Resistant Clinical Pseudomonas aeruginosa Isolates. | Nitasha D Menon, Megha S Kumar, T G Satheesh Babu, Sucharita Bose, Gayathri Vijayakumar, Manasi Baswe, Meghna Chatterjee, Jovita Rowena D'Silva, Kavya Shetty, Jayalekshmi Haripriyan, Anil Kumar, Samitha Nair, Priyanka Somanath, Bipin G Nair, Victor Nizet, Geetha B Kumar | MSphere | 2021-01-13 |
| Adaptive immunity to SARS-CoV-2 and COVID-19. | Alessandro Sette, Shane Crotty | Cell | 2021-01-12 |
| Viral speciation through subcellular genetic isolation and virogenesis incompatibility. | Vorrapon Chaikeeratisak, Erica A Birkholz, Amy M Prichard, MacKennon E Egan, Avani Mylvara, Poochit Nonejuie, Katrina T Nguyen, Joseph Sugie, Justin R Meyer, Joe Pogliano | Nature Communications | 2021-01-12 |
| Exposure to Epstein Barr virus and cognitive functioning in individuals with schizophrenia. | Faith Dickerson, Emily Katsafanas, Andrea Origoni, Amalia Squire, Sunil Khushalani, Theresa Newman, Kelly Rowe, Cassie Stallings, Christina L G Savage, Kevin Sweeney, Tanya T Nguyen, Alan Breier, Donald Goff, Glen Ford, Lorraine Jones-Brando, Robert Yolken | Schizophrenia Research | 2021-01-12 |
| High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing. | Søren M Karst, Ryan M Ziels, Rasmus H Kirkegaard, Emil A Sørensen, Daniel McDonald, Qiyun Zhu, Rob Knight, Mads Albertsen | Nature Methods | 2021-01-11 |
| Gut Microbial Ecosystem in Parkinson Disease: New Clinicobiological Insights from Multi-Omics. | Ai Huey Tan, Chun Wie Chong, Shen-Yang Lim, Ivan Kok Seng Yap, Cindy Shuan Ju Teh, Mun Fai Loke, Sze-Looi Song, Jiun Yan Tan, Ban Hong Ang, Yong Qi Tan, Mee Teck Kho, Jeff Bowman, Sanjiv Mahadeva, Hoi Sen Yong, Anthony E Lang | Annals Of Neurology | 2021-01-11 |
| HiDeF: identifying persistent structures in multiscale 'omics data. | Fan Zheng, She Zhang, Christopher Churas, Dexter Pratt, Ivet Bahar, Trey Ideker | Genome Biology | 2021-01-07 |
| Immunological memory to SARS-CoV-2 assessed for up to 8 months after infection. | Jennifer M Dan, Jose Mateus, Yu Kato, Kathryn M Hastie, Esther Dawen Yu, Caterina E Faliti, Alba Grifoni, Sydney I Ramirez, Sonya Haupt, April Frazier, Catherine Nakao, Vamseedhar Rayaprolu, Stephen A Rawlings, Bjoern Peters, Florian Krammer, Viviana Simon, Erica Ollmann Saphire, Davey M Smith, Daniela Weiskopf, Alessandro Sette, Shane Crotty | Science (New York, N.Y.) | 2021-01-06 |
| A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria. | Tiago Leão, Mingxun Wang, Nathan Moss, Ricardo da Silva, Jon Sanders, Sergey Nurk, Alexey Gurevich, Gregory Humphrey, Raphael Reher, Qiyun Zhu, Pedro Belda-Ferre, Evgenia Glukhov, Syrena Whitner, Kelsey L Alexander, Robert Rex, Pavel Pevzner, Pieter C Dorrestein, Rob Knight, Nuno Bandeira, William H Gerwick, Lena Gerwick | Marine Drugs | 2021-01-06 |
| Effects of Immunization With the Soil-Derived Bacterium on Stress Coping Behaviors and Cognitive Performance in a "Two Hit" Stressor Model. | Christine L Foxx, Jared D Heinze, Antonio González, Fernando Vargas, Michael V Baratta, Ahmed I Elsayed, Jessica R Stewart, Kelsey M Loupy, Mathew R Arnold, M C Flux, Saydie A Sago, Philip H Siebler, Lauren N Milton, Margaret W Lieb, James E Hassell, David G Smith, Kyo A K Lee, Sandra A Appiah, Evan J Schaefer, Morgan Panitchpakdi, Nicole C Sikora, Kelly C Weldon, Christopher E Stamper, Dominic Schmidt, David A Duggan, Yosan M Mengesha, Mikale Ogbaselassie, Kadi T Nguyen, Chloe A Gates, K'loni Schnabel, Linh Tran, Joslynn D Jones, Martha H Vitaterna, Fred W Turek, Monika Fleshner, Pieter C Dorrestein, Rob Knight, Kenneth P Wright, Christopher A Lowry | Frontiers In Physiology | 2021-01-05 |
| Microbiome for Mars: surveying microbiome connections to healthcare with implications for long-duration human spaceflight, virtual workshop, July 13, 2020. | Michael LaPelusa, Dorit Donoviel, Sergio E Branzini, Paul E Carlson, Stephanie Culler, Amrita K Cheema, Rima Kaddurah-Daouk, Denise Kelly, Isabelle de Cremoux, Rob Knight, Rosa Krajmalnik-Brown, Stephen L Mayo, Sarkis K Mazmanian, Emeran A Mayer, Joseph F Petrosino, Keith Garrison | Microbiome | 2021-01-04 |
| Reply to: Examining microbe-metabolite correlations by linear methods. | James T Morton, Daniel McDonald, Alexander A Aksenov, Louis Felix Nothias, James R Foulds, Robert A Quinn, Michelle H Badri, Tami L Swenson, Marc W Van Goethem, Trent R Northen, Yoshiki Vazquez-Baeza, Mingxun Wang, Nicholas A Bokulich, Aaron Watters, Se Jin Song, Richard Bonneau, Pieter C Dorrestein, Rob Knight | Nature Methods | 2021-01-04 |
| Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater. | Daniel Petras, Jeremiah J Minich, Lucia B Cancelada, Ralph R Torres, Emily Kunselman, Mingxun Wang, Margot E White, Eric E Allen, Kimberly A Prather, Lihini I Aluwihare, Pieter C Dorrestein | Chemosphere | 2021-01-02 |
| COVID-19 and Cancer Comorbidity: Therapeutic Opportunities and Challenges. | Anup S Pathania, Philip Prathipati, Bakrudeen Aa Abdul, Srinivas Chava, Santharam S Katta, Subash C Gupta, Pandu R Gangula, Manoj K Pandey, Donald L Durden, Siddappa N Byrareddy, Kishore B Challagundla | Theranostics | 2021-01-01 |
| Pathophysiology of Inflammatory Bowel Diseases. | John T Chang | The New England Journal Of Medicine | 2020-12-31 |
| Genomics Links Inflammation with Neurocognitive Impairment in Children Living with Human Immunodeficiency Virus type-1. | Pratima Rawat, Sean S Brummel, Kumud K Singh, Jihoon Kim, Kelly A Frazer, Sharon Nichols, George R Seage Iii, Paige L Williams, Russell B Van Dyke, Olivier Harismendy, Rodney N Trout, Stephen A Spector, | The Journal Of Infectious Diseases | 2020-12-29 |
| SARS-CoV-2 escape from a highly neutralizing COVID-19 convalescent plasma. | Emanuele Andreano, Giulia Piccini, Danilo Licastro, Lorenzo Casalino, Nicole V Johnson, Ida Paciello, Simeone Dal Monego, Elisa Pantano, Noemi Manganaro, Alessandro Manenti, Rachele Manna, Elisa Casa, Inesa Hyseni, Linda Benincasa, Emanuele Montomoli, Rommie E Amaro, Jason S McLellan, Rino Rappuoli | BioRxiv : The Preprint Server For Biology | 2020-12-28 |
| Data-driven noise modeling of digital DNA melting analysis enables prediction of sequence discriminating power. | Lennart Langouche, April Aralar, Mridu Sinha, Shelley M Lawrence, Stephanie I Fraley, Todd P Coleman | Bioinformatics (Oxford, England) | 2020-12-23 |
| Screening and characterization of polyhydroxyalkanoate granules, and phylogenetic analysis of polyhydroxyalkanoate synthase gene PhaC in cyanobacteria. | Karl Hong, Joris Beld, Tony D Davis, Michael D Burkart, Brian Palenik | Journal Of Phycology | 2020-12-22 |
| Natural Products with Potential to Treat RNA Virus Pathogens Including SARS-CoV-2. | Mitchell P Christy, Yoshinori Uekusa, Lena Gerwick, William H Gerwick | Journal Of Natural Products | 2020-12-22 |
| Application of the Relationship-Based Model to Engagement for Field Trials of Genetically Engineered Malaria Vectors. | Ana Kormos, Gregory C Lanzaro, Ethan Bier, George Dimopoulos, John M Marshall, João Pinto, Adionilde Aguiar Dos Santos, Affane Bacar, Herodes Sousa Pontes Sacramento Rompão, Anthony A James | The American Journal Of Tropical Medicine And Hygiene | 2020-12-21 |
| Immunological memory to SARS-CoV-2 assessed for up to eight months after infection. | Jennifer M Dan, Jose Mateus, Yu Kato, Kathryn M Hastie, Esther Dawen Yu, Caterina E Faliti, Alba Grifoni, Sydney I Ramirez, Sonya Haupt, April Frazier, Catherine Nakao, Vamseedhar Rayaprolu, Stephen A Rawlings, Bjoern Peters, Florian Krammer, Viviana Simon, Erica Ollmann Saphire, Davey M Smith, Daniela Weiskopf, Alessandro Sette, Shane Crotty | BioRxiv : The Preprint Server For Biology | 2020-12-18 |
| Coinfection and infection duration shape how pathogens affect the African buffalo gut microbiota. | Kate A Sabey, Se Jin Song, Anna Jolles, Rob Knight, Vanessa O Ezenwa | The ISME Journal | 2020-12-17 |
| Harnessing Iron Acquisition Machinery to Target Enterobacteriaceae. | Artur Sargun, Romana R Gerner, Manuela Raffatellu, Elizabeth M Nolan | The Journal Of Infectious Diseases | 2020-12-17 |
| Maternal diet alters human milk oligosaccharide composition with implications for the milk metagenome. | Maxim D Seferovic, Mahmoud Mohammad, Ryan M Pace, Melinda Engevik, James Versalovic, Lars Bode, Morey Haymond, Kjersti M Aagaard | Scientific Reports | 2020-12-16 |
| Human milk oligosaccharide DSLNT and gut microbiome in preterm infants predicts necrotising enterocolitis. | Andrea C Masi, Nicholas D Embleton, Christopher A Lamb, Gregory Young, Claire L Granger, Julia Najera, Daniel P Smith, Kristi L Hoffman, Joseph F Petrosino, Lars Bode, Janet E Berrington, Christopher J Stewart | Gut | 2020-12-16 |
| Genome-scale determination of 5´ and 3´ boundaries of RNA transcripts in Streptomyces genomes. | Yongjae Lee, Namil Lee, Soonkyu Hwang, Woori Kim, Yujin Jeong, Suhyung Cho, Bernhard O Palsson, Byung-Kwan Cho | Scientific Data | 2020-12-15 |
| Gut microbiome directs hepatocytes to recruit MDSC and promote cholangiocarcinoma. | Qianfei Zhang, Chi Ma, Yi Duan, Bernd Heinrich, Umberto Rosato, Laurence P Diggs, Lichun Ma, Soumen Roy, Qiong Fu, Zachary J Brown, Simon Wabitsch, Vishal Thovarai, Jianyang Fu, Dechun Feng, Benjamin Ruf, Linda L Cui, Varun Subramanyam, Karen M Frank, Sophie Wang, David E Kleiner, Thomas Ritz, Christian Rupp, Bin Gao, Thomas Longerich, Alexander Kroemer, Xin Wei Wang, Mathuros Ruchirawat, Firouzeh Korangy, Bernd Schnabl, Giorgio Trinchieri, Tim F Greten | Cancer Discovery | 2020-12-15 |
| Gut microbiome, liver immunology, and liver diseases. | Rui Wang, Ruqi Tang, Bo Li, Xiong Ma, Bernd Schnabl, Herbert Tilg | Cellular & Molecular Immunology | 2020-12-14 |
| The Commensal Microbe Veillonella as a Marker for Response to an FGF19 Analog in NASH. | Rohit Loomba, Lei Ling, Duy M Dinh, Alex M DePaoli, Hsiao D Lieu, Stephen A Harrison, Arun J Sanyal | Hepatology (Baltimore, Md.) | 2020-12-11 |
| Machine learning uncovers independently regulated modules in the Bacillus subtilis transcriptome. | Kevin Rychel, Anand V Sastry, Bernhard O Palsson | Nature Communications | 2020-12-11 |
| Gut dysbiosis as a driver in alcohol-induced liver injury. | Bradley Fairfield, Bernd Schnabl | JHEP Reports : Innovation In Hepatology | 2020-12-10 |
| Effects of Extended Postmortem Interval on Microbial Communities in Organs of the Human Cadaver. | Holly Lutz, Alexandria Vangelatos, Neil Gottel, Antonio Osculati, Silvia Visona, Sheree J Finley, Jack A Gilbert, Gulnaz T Javan | Frontiers In Microbiology | 2020-12-08 |
| Neonatal Diet Impacts the Large Intestine Luminal Metabolome at Weaning and Post-Weaning in Piglets Fed Formula or Human Milk. | Fernanda Rosa, Katelin S Matazel, Anne K Bowlin, Keith D Williams, Ahmed A Elolimy, Sean H Adams, Lars Bode, Laxmi Yeruva | Frontiers In Immunology | 2020-12-07 |
| The Gut Microbiome, Aging, and Longevity: A Systematic Review. | Varsha D Badal, Eleonora D Vaccariello, Emily R Murray, Kasey E Yu, Rob Knight, Dilip V Jeste, Tanya T Nguyen | Nutrients | 2020-12-07 |
| Short chain fatty acids produced by Cutibacterium acnes inhibit biofilm formation by Staphylococcus epidermidis. | Kouki Nakamura, Alan M O'Neill, Michael R Williams, Laura Cau, Teruaki Nakatsuji, Alexander R Horswill, Richard L Gallo | Scientific Reports | 2020-12-04 |
| Understanding Microbial Community Dynamics in Up-Flow Bioreactors to Improve Mitigation Strategies for Oil Souring. | Avishek Dutta, Ben Smith, Thomas Goldman, Leanne Walker, Matthew Streets, Bob Eden, Reinhard Dirmeier, Jeff S Bowman | Frontiers In Microbiology | 2020-12-03 |
| Multiplexed CRISPR/CAS9-mediated engineering of pre-clinical mouse models bearing native human B cell receptors. | Xuesong Wang, Rashmi Ray, Sven Kratochvil, Eleonora Melzi, Ying-Cing Lin, Sophie Giguere, Liling Xu, John Warner, Diane Cheon, Alessia Liguori, Bettina Groschel, Nicole Phelps, Yumiko Adachi, Ryan Tingle, Lin Wu, Shane Crotty, Kathrin H Kirsch, Usha Nair, William R Schief, Facundo D Batista | The EMBO Journal | 2020-12-01 |
| A multiscale coarse-grained model of the SARS-CoV-2 virion. | Alvin Yu, Alexander J Pak, Peng He, Viviana Monje-Galvan, Lorenzo Casalino, Zied Gaieb, Abigail C Dommer, Rommie E Amaro, Gregory A Voth | Biophysical Journal | 2020-11-28 |
| Survival of the weakest in non-transitive asymmetric interactions among strains of E. coli. | Michael J Liao, Arianna Miano, Chloe B Nguyen, Lin Chao, Jeff Hasty | Nature Communications | 2020-11-27 |
| Role of Epigenetics in the Regulation of Immune Functions of the Skin. | Yu Sawada, Richard L Gallo | The Journal Of Investigative Dermatology | 2020-11-27 |
| Vitamin D metabolites and the gut microbiome in older men. | Robert L Thomas, Lingjing Jiang, John S Adams, Zhenjiang Zech Xu, Jian Shen, Stefan Janssen, Gail Ackermann, Dirk Vanderschueren, Steven Pauwels, Rob Knight, Eric S Orwoll, Deborah M Kado | Nature Communications | 2020-11-26 |
| Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules. | Jonathon L Baker, James T Morton, Márcia Dinis, Ruth Alvarez, Nini C Tran, Rob Knight, Anna Edlund | Genome Research | 2020-11-25 |
| Hindering triple negative breast cancer progression by targeting endogenous interleukin-30 requires IFNγ signaling. | Carlo Sorrentino, Stefania Livia Ciummo, Luigi D'Antonio, Paola Lanuti, Scott I Abrams, Zhinan Yin, Li-Fan Lu, Emma Di Carlo | Clinical And Translational Medicine | 2020-11-24 |
| Microbiome of the Aerodigestive Tract in Health and Esophageal Disease. | Aws Hasan, Laith K Hasan, Bernd Schnabl, Madeline Greytak, Rena Yadlapati | Digestive Diseases And Sciences | 2020-11-24 |
| Expansion of Gamma-Butyrolactone Signaling Molecule Biosynthesis to Phosphotriester Natural Products. | Yuta Kudo, Takayoshi Awakawa, Yi-Ling Du, Peter A Jordan, Kaitlin E Creamer, Paul R Jensen, Roger G Linington, Katherine S Ryan, Bradley S Moore | ACS Chemical Biology | 2020-11-24 |
| Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra. | Kai Dührkop, Louis-Félix Nothias, Markus Fleischauer, Raphael Reher, Marcus Ludwig, Martin A Hoffmann, Daniel Petras, William H Gerwick, Juho Rousu, Pieter C Dorrestein, Sebastian Böcker | Nature Biotechnology | 2020-11-23 |
| Spatial and temporal variations in Synechococcus microdiversity in the Southern California coastal ecosystem. | Maitreyi Nagarkar, Maggie Wang, Bellineth Valencia, Brian Palenik | Environmental Microbiology | 2020-11-23 |
| Triclosan leads to dysregulation of the metabolic regulator FGF21 exacerbating high fat diet-induced nonalcoholic fatty liver disease. | Mei-Fei Yueh, Feng He, Chen Chen, Catherine Vu, Anupriya Tripathi, Rob Knight, Michael Karin, Shujuan Chen, Robert H Tukey | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-11-23 |
| AI-Driven Multiscale Simulations Illuminate Mechanisms of SARS-CoV-2 Spike Dynamics. | Lorenzo Casalino, Abigail Dommer, Zied Gaieb, Emilia P Barros, Terra Sztain, Surl-Hee Ahn, Anda Trifan, Alexander Brace, Anthony Bogetti, Heng Ma, Hyungro Lee, Matteo Turilli, Syma Khalid, Lillian Chong, Carlos Simmerling, David J Hardy, Julio D C Maia, James C Phillips, Thorsten Kurth, Abraham Stern, Lei Huang, John McCalpin, Mahidhar Tatineni, Tom Gibbs, John E Stone, Shantenu Jha, Arvind Ramanathan, Rommie E Amaro | BioRxiv : The Preprint Server For Biology | 2020-11-20 |
| Multiomics Analysis Provides Insight into the Laboratory Evolution of toward the Metabolic Usage of Fluorinated Indoles. | Federica Agostini, Ludwig Sinn, Daniel Petras, Christian J Schipp, Vladimir Kubyshkin, Allison Ann Berger, Pieter C Dorrestein, Juri Rappsilber, Nediljko Budisa, Beate Koksch | ACS Central Science | 2020-11-20 |
| "[It] is now my responsibility to fulfill that wish:" Clinical and rapid autopsy staff members' experiences and perceptions of HIV reservoir research at the end of life. | Kelly E Perry, Jeff Taylor, Hursch Patel, Sogol Stephanie Javadi, Kushagra Mathur, Andy Kaytes, Susanna Concha-Garcia, Susan Little, Davey Smith, Sara Gianella, Karine Dubé | PloS One | 2020-11-18 |
| Targeting the renin-angiotensin signaling pathway in COVID-19: Unanswered questions, opportunities, and challenges. | Krishna Sriram, Rohit Loomba, Paul A Insel | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-11-17 |
| Targeting pathobionts for the treatment of alcohol-associated liver disease. | Sonja Lang, Münevver Demir, Bernd Schnabl | Liver International : Official Journal Of The International Association For The Study Of The Liver | 2020-11-17 |
| Intersection of Polycystic Ovary Syndrome and the Gut Microbiome. | Maryan G Rizk, Varykina G Thackray | Journal Of The Endocrine Society | 2020-11-16 |
| Chemically informed analyses of metabolomics mass spectrometry data with Qemistree. | Anupriya Tripathi, Yoshiki Vázquez-Baeza, Julia M Gauglitz, Mingxun Wang, Kai Dührkop, Mélissa Nothias-Esposito, Deepa D Acharya, Madeleine Ernst, Justin J J van der Hooft, Qiyun Zhu, Daniel McDonald, Asker D Brejnrod, Antonio Gonzalez, Jo Handelsman, Markus Fleischauer, Marcus Ludwig, Sebastian Böcker, Louis-Félix Nothias, Rob Knight, Pieter C Dorrestein | Nature Chemical Biology | 2020-11-16 |
| Call for Original Research Papers for a Special Collection in : the Microbiome and Infection. | Manuela Raffatellu, Andreas J Bäumler | Infection And Immunity | 2020-11-16 |
| The Balance of Stromal BMP Signaling Mediated by GREM1 and ISLR Drives Colorectal Carcinogenesis. | Hiroki Kobayashi, Krystyna A Gieniec, Josephine A Wright, Tongtong Wang, Naoya Asai, Yasuyuki Mizutani, Tadashi Lida, Ryota Ando, Nobumi Suzuki, Tamsin R M Lannagan, Jia Q Ng, Akitoshi Hara, Yukihiro Shiraki, Shinji Mii, Mari Ichinose, Laura Vrbanac, Matthew J Lawrence, Tarik Sammour, Kay Uehara, Gareth Davies, Leszek Lisowski, Ian E Alexander, Yoku Hayakawa, Lisa M Butler, Andrew C W Zannettino, M Omar Din, Jeff Hasty, Alastair D Burt, Simon J Leedham, Anil K Rustgi, Siddhartha Mukherjee, Timothy C Wang, Atsushi Enomoto, Masahide Takahashi, Daniel L Worthley, Susan L Woods | Gastroenterology | 2020-11-14 |
| Sphingosine 1-Phosphate Receptor 2 Is Central to Maintaining Epidermal Barrier Homeostasis. | Satomi Igawa, Ayaka Ohzono, Phoebe Pham, Zhenping Wang, Teruaki Nakatsuji, Tatsuya Dokoshi, Anna Di Nardo | The Journal Of Investigative Dermatology | 2020-11-14 |
| The flexibility of ACE2 in the context of SARS-CoV-2 infection. | Emilia P Barros, Lorenzo Casalino, Zied Gaieb, Abigail C Dommer, Yuzhang Wang, Lucy Fallon, Lauren Raguette, Kellon Belfon, Carlos Simmerling, Rommie E Amaro | Biophysical Journal | 2020-11-13 |
| High-Quality Genome-Scale Models From Error-Prone, Long-Read Assemblies. | Jared T Broddrick, Richard Szubin, Charles J Norsigian, Jonathan M Monk, Bernhard O Palsson, Mary N Parenteau | Frontiers In Microbiology | 2020-11-12 |
| Bare Versus Hair: Do Pubic Hair Grooming Preferences Dictate the Urogenital Microbiome? | Julia Geynisman-Tan, Kimberly Kenton, Meera Tavathia, Alyson Yee, Jack A Gilbert, Sarah Collins, Christina Lewicky-Gaupp, Margaret Mueller | Female Pelvic Medicine & Reconstructive Surgery | 2020-11-11 |
| Elucidation of Regulatory Modes for Five Two-Component Systems in Escherichia coli Reveals Novel Relationships. | Kumari Sonal Choudhary, Julia A Kleinmanns, Katherine Decker, Anand V Sastry, Ye Gao, Richard Szubin, Yara Seif, Bernhard O Palsson | MSystems | 2020-11-10 |
| Comparative Circulation Dynamics of the Five Main HIV Types in China. | Bram Vrancken, Bin Zhao, Xingguang Li, Xiaoxu Han, Haizhou Liu, Jin Zhao, Ping Zhong, Yi Lin, Junjie Zai, Mingchen Liu, Davey M Smith, Simon Dellicour, Antoine Chaillon | Journal Of Virology | 2020-11-09 |
| Review of Cardiac Involvement in Multisystem Inflammatory Syndrome in Children. | Tarek Alsaied, Adriana H Tremoulet, Jane C Burns, Arwa Saidi, Audrey Dionne, Sean M Lang, Jane W Newburger, Sarah de Ferranti, Kevin G Friedman | Circulation | 2020-11-09 |
| Semicontinuous system for the production of recombinant mCherry protein in Chlamydomonas reinhardtii. | Cesar Andres Diaz Arias, Marcelo Chuei Matsudo, Livia Seno Ferreira-Camargo, João Vitor Dutra Molino, Stephen Patrick Mayfield, João Carlos Monteiro de Carvalho | Biotechnology Progress | 2020-11-09 |
| Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data. | Alexander A Aksenov, Ivan Laponogov, Zheng Zhang, Sophie L F Doran, Ilaria Belluomo, Dennis Veselkov, Wout Bittremieux, Louis Felix Nothias, Mélissa Nothias-Esposito, Katherine N Maloney, Biswapriya B Misra, Alexey V Melnik, Aleksandr Smirnov, Xiuxia Du, Kenneth L Jones, Kathleen Dorrestein, Morgan Panitchpakdi, Madeleine Ernst, Justin J J van der Hooft, Mabel Gonzalez, Chiara Carazzone, Adolfo Amézquita, Chris Callewaert, James T Morton, Robert A Quinn, Amina Bouslimani, Andrea Albarracín Orio, Daniel Petras, Andrea M Smania, Sneha P Couvillion, Meagan C Burnet, Carrie D Nicora, Erika Zink, Thomas O Metz, Viatcheslav Artaev, Elizabeth Humston-Fulmer, Rachel Gregor, Michael M Meijler, Itzhak Mizrahi, Stav Eyal, Brooke Anderson, Rachel Dutton, Raphaël Lugan, Pauline Le Boulch, Yann Guitton, Stephanie Prevost, Audrey Poirier, Gaud Dervilly, Bruno Le Bizec, Aaron Fait, Noga Sikron Persi, Chao Song, Kelem Gashu, Roxana Coras, Monica Guma, Julia Manasson, Jose U Scher, Dinesh Kumar Barupal, Saleh Alseekh, Alisdair R Fernie, Reza Mirnezami, Vasilis Vasiliou, Robin Schmid, Roman S Borisov, Larisa N Kulikova, Rob Knight, Mingxun Wang, George B Hanna, Pieter C Dorrestein, Kirill Veselkov | Nature Biotechnology | 2020-11-09 |
| Response of Horticultural Soil Microbiota to Different Fertilization Practices. | Iratxe Zarraonaindia, Xabier Simón Martínez-Goñi, Olaia Liñero, Marta Muñoz-Colmenero, Mikel Aguirre, David Abad, Igor Baroja-Careaga, Alberto de Diego, Jack A Gilbert, Andone Estonba | Plants (Basel, Switzerland) | 2020-11-06 |
| Alterations in Gut Microbiota Do Not Play a Causal Role in Diet-independent Weight Gain Caused by Ovariectomy. | Lillian Sau, Christine M Olmstead, Laura J Cui, Annie Chen, Reeya S Shah, Scott T Kelley, Varykina G Thackray | Journal Of The Endocrine Society | 2020-11-05 |
| Verrucosamide, a Cytotoxic 1,4-Thiazepane-Containing Thiodepsipeptide from a Marine-Derived Actinomycete. | Vimal Nair, Min Cheol Kim, James A Golen, Arnold L Rheingold, Gabriel A Castro, Paul R Jensen, William Fenical | Marine Drugs | 2020-11-05 |
| The gut mycobiome: a novel player in chronic liver diseases. | Lu Jiang, Peter Stärkel, Jian-Gao Fan, Derrick Eugene Fouts, Petra Bacher, Bernd Schnabl | Journal Of Gastroenterology | 2020-11-05 |
| Coronavirus, social distancing, and global geriatric mental health crisis: opportunities for promoting wisdom and resilience amid a pandemic. | Dilip V Jeste | International Psychogeriatrics | 2020-11-05 |
| A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis. | Tae Gyu Oh, Susy M Kim, Cyrielle Caussy, Ting Fu, Jian Guo, Shirin Bassirian, Seema Singh, Egbert V Madamba, Ricki Bettencourt, Lisa Richards, Ruth T Yu, Annette R Atkins, Tao Huan, David A Brenner, Claude B Sirlin, Michael Downes, Ronald M Evans, Rohit Loomba | Cell Metabolism | 2020-11-04 |
| Host variables confound gut microbiota studies of human disease. | Ivan Vujkovic-Cvijin, Jack Sklar, Lingjing Jiang, Loki Natarajan, Rob Knight, Yasmine Belkaid | Nature | 2020-11-04 |
| Efficient population modification gene-drive rescue system in the malaria mosquito Anopheles stephensi. | Adriana Adolfi, Valentino M Gantz, Nijole Jasinskiene, Hsu-Feng Lee, Kristy Hwang, Gerard Terradas, Emily A Bulger, Arunachalam Ramaiah, Jared B Bennett, J J Emerson, John M Marshall, Ethan Bier, Anthony A James | Nature Communications | 2020-11-03 |
| Bacterial-fungal interactions revealed by genome-wide analysis of bacterial mutant fitness. | Emily C Pierce, Manon Morin, Jessica C Little, Roland B Liu, Joanna Tannous, Nancy P Keller, Kit Pogliano, Benjamin E Wolfe, Laura M Sanchez, Rachel J Dutton | Nature Microbiology | 2020-11-02 |
| High Prevalence of HIV-1 Drug Resistance and Dynamics of Transmission Among High-Risk Populations in Port-au-Prince, Haiti. | Frantz Jean Louis, Jean Wysler Domercant, Caroline Ignacio, Sara Gianella, Guethina Galbaud, Maureen Leonard, Davey M Smith, Antoine Chaillon | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2020-11-02 |
| A cysteine protease inhibitor blocks SARS-CoV-2 infection of human and monkey cells. | Drake M Mellott, Chien-Te Tseng, Aleksandra Drelich, Pavla Fajtová, Bala C Chenna, Demetrios H Kostomiris, Jason Hsu, Jiyun Zhu, Zane W Taylor, Vivian Tat, Ardala Katzfuss, Linfeng Li, Miriam A Giardini, Danielle Skinner, Ken Hirata, Sungjun Beck, Aaron F Carlin, Alex E Clark, Laura Beretta, Daniel Maneval, Felix Frueh, Brett L Hurst, Hong Wang, Klaudia I Kocurek, Frank M Raushel, Anthony J O'Donoghue, Jair Lage de Siqueira-Neto, Thomas D Meek, James H McKerrow | BioRxiv : The Preprint Server For Biology | 2020-10-30 |
| Expanding magnetic organelle biogenesis in the domain Bacteria. | Wei Lin, Wensi Zhang, Greig A Paterson, Qiyun Zhu, Xiang Zhao, Rob Knight, Dennis A Bazylinski, Andrew P Roberts, Yongxin Pan | Microbiome | 2020-10-30 |
| Maintaining Patient Safety and Data Integrity of Nonalcoholic Steatohepatitis Clinical Trials During the Severe Acute Respiratory Syndrome-Coronavirus 2 Pandemic. | Naim Alkhouri, Anita Kohli, Rohit Loomba, Stephen A Harrison | Hepatology (Baltimore, Md.) | 2020-10-29 |
| Exploration of Bacterial Bottlenecks and Streptococcus pneumoniae Pathogenesis by CRISPRi-Seq. | Xue Liu, Jacqueline M Kimmey, Laura Matarazzo, Vincent de Bakker, Laurye Van Maele, Jean-Claude Sirard, Victor Nizet, Jan-Willem Veening | Cell Host & Microbe | 2020-10-28 |
| RAAS Inhibitors and Risk of Covid-19. | Krishna Sriram, Rohit Loomba, Paul A Insel | The New England Journal Of Medicine | 2020-10-27 |
| Genetic elucidation of interconnected antibiotic pathways mediating maize innate immunity. | Yezhang Ding, Philipp R Weckwerth, Elly Poretsky, Katherine M Murphy, James Sims, Evan Saldivar, Shawn A Christensen, Si Nian Char, Bing Yang, Anh-Dao Tong, Zhouxin Shen, Karl A Kremling, Edward S Buckler, Tom Kono, David R Nelson, Jörg Bohlmann, Matthew G Bakker, Martha M Vaughan, Ahmed S Khalil, Mariam Betsiashvili, Keini Dressano, Tobias G Köllner, Steven P Briggs, Philipp Zerbe, Eric A Schmelz, Alisa Huffaker | Nature Plants | 2020-10-26 |
| Harmonising regulatory approval for antibiotics in children. | Phoebe C M Williams, John Bradley, Emmanuel Roilides, Linus Olson, Sheldon Kaplan, Irja Lutsar, Carlo Giaquinto, Daniel K Benjamin, Mike Sharland | The Lancet. Child & Adolescent Health | 2020-10-24 |
| Role of Carbon Monoxide in Host-Gut Microbiome Communication. | Christopher P Hopper, Ladie Kimberly De La Cruz, Kristin V Lyles, Lauren K Wareham, Jack A Gilbert, Zehava Eichenbaum, Marcin Magierowski, Robert K Poole, Jakob Wollborn, Binghe Wang | Chemical Reviews | 2020-10-22 |
| CAICE Studies: Insights from a Decade of Ocean-Atmosphere Experiments in the Laboratory. | Kathryn J Mayer, Jon S Sauer, Julie Dinasquet, Kimberly A Prather | Accounts Of Chemical Research | 2020-10-22 |
| Gut microbiome in Schizophrenia: Altered functional pathways related to immune modulation and atherosclerotic risk. | Tanya T Nguyen, Tomasz Kosciolek, Rebecca E Daly, Yoshiki Vázquez-Baeza, Austin Swafford, Rob Knight, Dilip V Jeste | Brain, Behavior, And Immunity | 2020-10-22 |
| Systems biology analysis of the Clostridioides difficile core-genome contextualizes microenvironmental evolutionary pressures leading to genotypic and phenotypic divergence. | Charles J Norsigian, Heather A Danhof, Colleen K Brand, Numan Oezguen, Firas S Midani, Bernhard O Palsson, Tor C Savidge, Robert A Britton, Jennifer K Spinler, Jonathan M Monk | NPJ Systems Biology And Applications | 2020-10-20 |
| Introducing the Mangrove Microbiome Initiative: Identifying Microbial Research Priorities and Approaches To Better Understand, Protect, and Rehabilitate Mangrove Ecosystems. | Sarah M Allard, Matthew T Costa, Ashley N Bulseco, Véronique Helfer, Laetitia G E Wilkins, Christiane Hassenrück, Karsten Zengler, Martin Zimmer, Natalia Erazo, Jorge L Mazza Rodrigues, Norman Duke, Vânia M M Melo, Inka Vanwonterghem, Howard Junca, Huxley M Makonde, Diego Javier Jiménez, Tallita C L Tavares, Marco Fusi, Daniele Daffonchio, Carlos M Duarte, Raquel S Peixoto, Alexandre S Rosado, Jack A Gilbert, Jeff Bowman | MSystems | 2020-10-20 |
| Identifying the effect of vancomycin on health care-associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media. | Akanksha Rajput, Saugat Poudel, Hannah Tsunemoto, Michael Meehan, Richard Szubin, Connor A Olson, Yara Seif, Anne Lamsa, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M Monk, Pieter C Dorrestein, Rob Knight, Joe Pogliano, Victor Nizet, Adam M Feist, Bernhard O Palsson | GigaScience | 2020-10-20 |
| Dynamics and Dispersal of Local HIV Epidemics Within San Diego and Across The San Diego-Tijuana Border. | Bram Vrancken, Sanjay R Mehta, Santiago Ávila-Ríos, Claudia García-Morales, Daniela Tapia-Trejo, Gustavo Reyes-Terán, Samuel Navarro-Álvarez, Susan J Little, Martin Hoenigl, Heather A Pines, Thomas Patterson, Steffanie A Strathdee, Davey M Smith, Simon Dellicour, Antoine Chaillon | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2020-10-20 |
| Evaluation of IL-17D in Host Immunity to Group A Infection. | Allen Washington, Nissi Varki, J Andrés Valderrama, Victor Nizet, Jack D Bui | Journal Of Immunology (Baltimore, Md. : 1950) | 2020-10-19 |
| Expert Panel Review on Non-Alcoholic Fatty Liver Disease in Persons With HIV. | Jordan E Lake, Turner Overton, Susanna Naggie, Mark Sulkowski, Rohit Loomba, David E Kleiner, Jennifer C Price, Kara W Chew, Raymond T Chung, Kathleen E Corey | Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association | 2020-10-16 |
| Content and Performance of the MiniMUGA Genotyping Array: A New Tool To Improve Rigor and Reproducibility in Mouse Research. | John Sebastian Sigmon, Matthew W Blanchard, Ralph S Baric, Timothy A Bell, Jennifer Brennan, Gudrun A Brockmann, A Wesley Burks, J Mauro Calabrese, Kathleen M Caron, Richard E Cheney, Dominic Ciavatta, Frank Conlon, David B Darr, James Faber, Craig Franklin, Timothy R Gershon, Lisa Gralinski, Bin Gu, Christiann H Gaines, Robert S Hagan, Ernest G Heimsath, Mark T Heise, Pablo Hock, Folami Ideraabdullah, J Charles Jennette, Tal Kafri, Anwica Kashfeen, Mike Kulis, Vivek Kumar, Colton Linnertz, Alessandra Livraghi-Butrico, K C Kent Lloyd, Cathleen Lutz, Rachel M Lynch, Terry Magnuson, Glenn K Matsushima, Rachel McMullan, Darla R Miller, Karen L Mohlke, Sheryl S Moy, Caroline E Y Murphy, Maya Najarian, Lori O'Brien, Abraham A Palmer, Benjamin D Philpot, Scott H Randell, Laura Reinholdt, Yuyu Ren, Steve Rockwood, Allison R Rogala, Avani Saraswatula, Christopher M Sassetti, Jonathan C Schisler, Sarah A Schoenrock, Ginger D Shaw, John R Shorter, Clare M Smith, Celine L St Pierre, Lisa M Tarantino, David W Threadgill, William Valdar, Barbara J Vilen, Keegan Wardwell, Jason K Whitmire, Lucy Williams, Mark J Zylka, Martin T Ferris, Leonard McMillan, Fernando Pardo Manuel de Villena | Genetics | 2020-10-16 |
| A high-stringency blueprint of the human proteome. | Subash Adhikari, Edouard C Nice, Eric W Deutsch, Lydie Lane, Gilbert S Omenn, Stephen R Pennington, Young-Ki Paik, Christopher M Overall, Fernando J Corrales, Ileana M Cristea, Jennifer E Van Eyk, Mathias Uhlén, Cecilia Lindskog, Daniel W Chan, Amos Bairoch, James C Waddington, Joshua L Justice, Joshua LaBaer, Henry Rodriguez, Fuchu He, Markus Kostrzewa, Peipei Ping, Rebekah L Gundry, Peter Stewart, Sanjeeva Srivastava, Sudhir Srivastava, Fabio C S Nogueira, Gilberto B Domont, Yves Vandenbrouck, Maggie P Y Lam, Sara Wennersten, Juan Antonio Vizcaino, Marc Wilkins, Jochen M Schwenk, Emma Lundberg, Nuno Bandeira, Gyorgy Marko-Varga, Susan T Weintraub, Charles Pineau, Ulrike Kusebauch, Robert L Moritz, Seong Beom Ahn, Magnus Palmblad, Michael P Snyder, Ruedi Aebersold, Mark S Baker | Nature Communications | 2020-10-16 |
| Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. | David E Gordon, Joseph Hiatt, Mehdi Bouhaddou, Veronica V Rezelj, Svenja Ulferts, Hannes Braberg, Alexander S Jureka, Kirsten Obernier, Jeffrey Z Guo, Jyoti Batra, Robyn M Kaake, Andrew R Weckstein, Tristan W Owens, Meghna Gupta, Sergei Pourmal, Erron W Titus, Merve Cakir, Margaret Soucheray, Michael McGregor, Zeynep Cakir, Gwendolyn Jang, Matthew J O'Meara, Tia A Tummino, Ziyang Zhang, Helene Foussard, Ajda Rojc, Yuan Zhou, Dmitry Kuchenov, Ruth Hüttenhain, Jiewei Xu, Manon Eckhardt, Danielle L Swaney, Jacqueline M Fabius, Manisha Ummadi, Beril Tutuncuoglu, Ujjwal Rathore, Maya Modak, Paige Haas, Kelsey M Haas, Zun Zar Chi Naing, Ernst H Pulido, Ying Shi, Inigo Barrio-Hernandez, Danish Memon, Eirini Petsalaki, Alistair Dunham, Miguel Correa Marrero, David Burke, Cassandra Koh, Thomas Vallet, Jesus A Silvas, Caleigh M Azumaya, Christian Billesbølle, Axel F Brilot, Melody G Campbell, Amy Diallo, Miles Sasha Dickinson, Devan Diwanji, Nadia Herrera, Nick Hoppe, Huong T Kratochvil, Yanxin Liu, Gregory E Merz, Michelle Moritz, Henry C Nguyen, Carlos Nowotny, Cristina Puchades, Alexandrea N Rizo, Ursula Schulze-Gahmen, Amber M Smith, Ming Sun, Iris D Young, Jianhua Zhao, Daniel Asarnow, Justin Biel, Alisa Bowen, Julian R Braxton, Jen Chen, Cynthia M Chio, Un Seng Chio, Ishan Deshpande, Loan Doan, Bryan Faust, Sebastian Flores, Mingliang Jin, Kate Kim, Victor L Lam, Fei Li, Junrui Li, Yen-Li Li, Yang Li, Xi Liu, Megan Lo, Kyle E Lopez, Arthur A Melo, Frank R Moss, Phuong Nguyen, Joana Paulino, Komal Ishwar Pawar, Jessica K Peters, Thomas H Pospiech, Maliheh Safari, Smriti Sangwan, Kaitlin Schaefer, Paul V Thomas, Aye C Thwin, Raphael Trenker, Eric Tse, Tsz Kin Martin Tsui, Feng Wang, Natalie Whitis, Zanlin Yu, Kaihua Zhang, Yang Zhang, Fengbo Zhou, Daniel Saltzberg, , Anthony J Hodder, Amber S Shun-Shion, Daniel M Williams, Kris M White, Romel Rosales, Thomas Kehrer, Lisa Miorin, Elena Moreno, Arvind H Patel, Suzannah Rihn, Mir M Khalid, Albert Vallejo-Gracia, Parinaz Fozouni, Camille R Simoneau, Theodore L Roth, David Wu, Mohd Anisul Karim, Maya Ghoussaini, Ian Dunham, Francesco Berardi, Sebastian Weigang, Maxime Chazal, Jisoo Park, James Logue, Marisa McGrath, Stuart Weston, Robert Haupt, C James Hastie, Matthew Elliott, Fiona Brown, Kerry A Burness, Elaine Reid, Mark Dorward, Clare Johnson, Stuart G Wilkinson, Anna Geyer, Daniel M Giesel, Carla Baillie, Samantha Raggett, Hannah Leech, Rachel Toth, Nicola Goodman, Kathleen C Keough, Abigail L Lind, , Reyna J Klesh, Kafi R Hemphill, Jared Carlson-Stevermer, Jennifer Oki, Kevin Holden, Travis Maures, Katherine S Pollard, Andrej Sali, David A Agard, Yifan Cheng, James S Fraser, Adam Frost, Natalia Jura, Tanja Kortemme, Aashish Manglik, Daniel R Southworth, Robert M Stroud, Dario R Alessi, Paul Davies, Matthew B Frieman, Trey Ideker, Carmen Abate, Nolwenn Jouvenet, Georg Kochs, Brian Shoichet, Melanie Ott, Massimo Palmarini, Kevan M Shokat, Adolfo García-Sastre, Jeremy A Rassen, Robert Grosse, Oren S Rosenberg, Kliment A Verba, Christopher F Basler, Marco Vignuzzi, Andrew A Peden, Pedro Beltrao, Nevan J Krogan | Science (New York, N.Y.) | 2020-10-15 |
| Targeting the gut-liver-immune axis to treat cirrhosis. | Thomas Henry Tranah, Lindsey A Edwards, Bernd Schnabl, Debbie Lindsay Shawcross | Gut | 2020-10-15 |
| Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2020 Recommendations of the International Antiviral Society-USA Panel. | Michael S Saag, Rajesh T Gandhi, Jennifer F Hoy, Raphael J Landovitz, Melanie A Thompson, Paul E Sax, Davey M Smith, Constance A Benson, Susan P Buchbinder, Carlos Del Rio, Joseph J Eron, Gerd Fätkenheuer, Huldrych F Günthard, Jean-Michel Molina, Donna M Jacobsen, Paul A Volberding | JAMA | 2020-10-15 |
| Functional and Structural Insights into a Vif/PPP2R5 Complex Elucidated Using Patient HIV-1 Isolates and Computational Modeling. | Daniel J Salamango, Jennifer L McCann, Özlem Demir, Jordan T Becker, Jiayi Wang, Jairam R Lingappa, Nuri A Temiz, William L Brown, Rommie E Amaro, Reuben S Harris | Journal Of Virology | 2020-10-14 |
| TLR4 signaling and macrophage inflammatory responses are dampened by GIV/Girdin. | Lee Swanson, Gajanan D Katkar, Julian Tam, Rama F Pranadinata, Yogitha Chareddy, Jane Coates, Mahitha Shree Anandachar, Vanessa Castillo, Joshua Olson, Victor Nizet, Irina Kufareva, Soumita Das, Pradipta Ghosh | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-10-14 |
| Metabolites from Microbes Isolated from the Skin of the Panamanian Rocket Frog (Anura: Dendrobatidae). | Christian Martin H, Roberto Ibáñez, Louis-Félix Nothias, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein, Marcelino Gutiérrez | Metabolites | 2020-10-13 |
| Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV. | Bryn C Taylor, Kelly C Weldon, Ronald J Ellis, Donald Franklin, Daniel McDonald, Gregory Humphrey, MacKenzie Bryant, Julia Toronczak, Tara Schwartz, Jennifer Iudicello, Robert Heaton, Igor Grant, Sara Gianella, Scott Letendre, Austin Swafford, Pieter C Dorrestein, Rob Knight | MSystems | 2020-10-13 |
| Early-life gut dysbiosis linked to juvenile mortality in ostriches. | Elin Videvall, Se Jin Song, Hanna M Bensch, Maria Strandh, Anel Engelbrecht, Naomi Serfontein, Olof Hellgren, Adriaan Olivier, Schalk Cloete, Rob Knight, Charlie K Cornwallis | Microbiome | 2020-10-12 |
| Intestinal Virome in Patients With Alcoholic Hepatitis. | Lu Jiang, Sonja Lang, Yi Duan, Xinlian Zhang, Bei Gao, Jessica Chopyk, Leila K Schwanemann, Meritxell Ventura-Cots, Ramon Bataller, Francisco Bosques-Padilla, Elizabeth C Verna, Juan G Abraldes, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie L Shawcross, Samuel B Ho, Alexandre Louvet, Michael R Lucey, Philippe Mathurin, Guadalupe Garcia-Tsao, Tatiana Kisseleva, David A Brenner, Xin M Tu, Peter Stärkel, David Pride, Derrick E Fouts, Bernd Schnabl | Hepatology (Baltimore, Md.) | 2020-10-10 |
| Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity. | Xin Fang, Yoshiki Vázquez-Baeza, Emmanuel Elijah, Fernando Vargas, Gail Ackermann, Gregory Humphrey, Rebecca Lau, Kelly C Weldon, Jon G Sanders, Morgan Panitchpakdi, Carolina Carpenter, Alan K Jarmusch, Jennifer Neill, Ara Miralles, Parambir Dulai, Siddharth Singh, Matthew Tsai, Austin D Swafford, Larry Smarr, David L Boyle, Bernhard O Palsson, John T Chang, Pieter C Dorrestein, William J Sandborn, Rob Knight, Brigid S Boland | Inflammatory Bowel Diseases | 2020-10-07 |
| Cross-reactive memory T cells and herd immunity to SARS-CoV-2. | Marc Lipsitch, Yonatan H Grad, Alessandro Sette, Shane Crotty | Nature Reviews. Immunology | 2020-10-06 |
| Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of Antibiotic. | Alison Vrbanac, Kathryn A Patras, Alan K Jarmusch, Robert H Mills, Samuel R Shing, Robert A Quinn, Fernando Vargas, David J Gonzalez, Pieter C Dorrestein, Rob Knight, Victor Nizet | MSystems | 2020-10-06 |
| Distinctive gene and protein characteristics of extremely piezophilic Colwellia. | Logan M Peoples, Than S Kyaw, Juan A Ugalde, Kelli K Mullane, Roger A Chastain, A Aristides Yayanos, Masataka Kusube, Barbara A Methé, Douglas H Bartlett | BMC Genomics | 2020-10-06 |
| Prophage exotoxins enhance colonization fitness in epidemic scarlet fever-causing Streptococcus pyogenes. | Stephan Brouwer, Timothy C Barnett, Diane Ly, Katherine J Kasper, David M P De Oliveira, Tania Rivera-Hernandez, Amanda J Cork, Liam McIntyre, Magnus G Jespersen, Johanna Richter, Benjamin L Schulz, Gordon Dougan, Victor Nizet, Kwok-Yung Yuen, Yuanhai You, John K McCormick, Martina L Sanderson-Smith, Mark R Davies, Mark J Walker | Nature Communications | 2020-10-06 |
| metaFlye: scalable long-read metagenome assembly using repeat graphs. | Mikhail Kolmogorov, Derek M Bickhart, Bahar Behsaz, Alexey Gurevich, Mikhail Rayko, Sung Bong Shin, Kristen Kuhn, Jeffrey Yuan, Evgeny Polevikov, Timothy P L Smith, Pavel A Pevzner | Nature Methods | 2020-10-05 |
| Airborne transmission of SARS-CoV-2. | Kimberly A Prather, Linsey C Marr, Robert T Schooley, Melissa A McDiarmid, Mary E Wilson, Donald K Milton | Science (New York, N.Y.) | 2020-10-05 |
| Cholesterol 25-Hydroxylase inhibits SARS-CoV-2 and other coronaviruses by depleting membrane cholesterol. | Shaobo Wang, Wanyu Li, Hui Hui, Shashi Kant Tiwari, Qiong Zhang, Ben A Croker, Stephen Rawlings, Davey Smith, Aaron F Carlin, Tariq M Rana | The EMBO Journal | 2020-10-05 |
| Fecal Microbiota Transplantation Is Highly Effective in Real-World Practice: Initial Results From the FMT National Registry. | Colleen R Kelly, Eugene F Yen, Ari M Grinspan, Stacy A Kahn, Ashish Atreja, James D Lewis, Thomas A Moore, David T Rubin, Alison M Kim, Sonya Serra, Yanina Nersesova, Lydia Fredell, Dea Hunsicker, Daniel McDonald, Rob Knight, Jessica R Allegretti, Joel Pekow, Imad Absah, Ronald Hsu, Jennifer Vincent, Sahil Khanna, Lyn Tangen, Carl V Crawford, Mark C Mattar, Lea Ann Chen, Monika Fischer, Razvan I Arsenescu, Paul Feuerstadt, Jonathan Goldstein, David Kerman, Adam C Ehrlich, Gary D Wu, Loren Laine | Gastroenterology | 2020-10-01 |
| Transcriptomic Analysis Reveals Common Adaptation Mechanisms Under Different Stresses for Moderately Piezophilic Bacteria. | Han Wang, Yu Zhang, Douglas H Bartlett, Xiang Xiao | Microbial Ecology | 2020-09-30 |
| A Distinct Microbiome Signature in Posttreatment Lyme Disease Patients. | Madeleine Morrissette, Norman Pitt, Antonio González, Philip Strandwitz, Mariaelena Caboni, Alison W Rebman, Rob Knight, Anthony D'Onofrio, John N Aucott, Mark J Soloski, Kim Lewis | MBio | 2020-09-29 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Journal Of Virology | 2020-09-29 |
| Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome. | Bryn C Taylor, Kelly C Weldon, Ronald J Ellis, Donald Franklin, Tobin Groth, Emily C Gentry, Anupriya Tripathi, Daniel McDonald, Gregory Humphrey, MacKenzie Bryant, Julia Toronczak, Tara Schwartz, Michelli F Oliveira, Robert Heaton, Igor Grant, Sara Gianella, Scott Letendre, Austin Swafford, Pieter C Dorrestein, Rob Knight | MSystems | 2020-09-29 |
| Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans. | Connie W Y Ha, Anthony Martin, Gregory D Sepich-Poore, Baochen Shi, Yizhou Wang, Kenneth Gouin, Gregory Humphrey, Karenina Sanders, Yasiru Ratnayake, Kelvin S L Chan, Gustaf Hendrick, J R Caldera, Christian Arias, Jacob E Moskowitz, Shannan J Ho Sui, Shaohong Yang, David Underhill, Matthew J Brady, Simon Knott, Kelly Kaihara, Michael J Steinbaugh, Huiying Li, Dermot P B McGovern, Rob Knight, Phillip Fleshner, Suzanne Devkota | Cell | 2020-09-28 |
| Optimal Threshold of Controlled Attenuation Parameter for Detection of HIV-Associated NAFLD With Magnetic Resonance Imaging as the Reference Standard. | Veeral H Ajmera, Edward R Cachay, Christian B Ramers, Shirin Bassirian, Seema Singh, Richele Bettencourt, Lisa Richards, Gavin Hamilton, Michael Middleton, Katie Fowler, Claude Sirlin, Rohit Loomba | Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America | 2020-09-25 |
| Yeast homologs of human MCUR1 regulate mitochondrial proline metabolism. | Mohammad Zulkifli, John K Neff, Shrishiv A Timbalia, Natalie M Garza, Yingqi Chen, Jeramie D Watrous, Marta Murgia, Prachi P Trivedi, Steven K Anderson, Dhanendra Tomar, Roland Nilsson, Muniswamy Madesh, Mohit Jain, Vishal M Gohil | Nature Communications | 2020-09-25 |
| Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut microbiota. | Anton Lavrinienko, Eugene Tukalenko, Timothy A Mousseau, Luke R Thompson, Rob Knight, Tapio Mappes, Phillip C Watts | Scientific Data | 2020-09-23 |
| Nutrition and the Gut Microbiota in 10- to 18-Month-Old Children Living in Urban Slums of Mumbai, India. | Samantha L Huey, Lingjing Jiang, Marcus W Fedarko, Daniel McDonald, Cameron Martino, Farhana Ali, David G Russell, Shobha A Udipi, Aparna Thorat, Varsha Thakker, Padmini Ghugre, R D Potdar, Harsha Chopra, Kripa Rajagopalan, Jere D Haas, Julia L Finkelstein, Rob Knight, Saurabh Mehta | MSphere | 2020-09-23 |
| Cross-reactive serum and memory B cell responses to spike protein in SARS-CoV-2 and endemic coronavirus infection. | Ge Song, Wan-Ting He, Sean Callaghan, Fabio Anzanello, Deli Huang, James Ricketts, Jonathan L Torres, Nathan Beutler, Linghang Peng, Sirena Vargas, Jon Cassell, Mara Parren, Linlin Yang, Caroline Ignacio, Davey M Smith, James E Voss, David Nemazee, Andrew B Ward, Thomas Rogers, Dennis R Burton, Raiees Andrabi | BioRxiv : The Preprint Server For Biology | 2020-09-23 |
| The Bitome: digitized genomic features reveal fundamental genome organization. | Cameron R Lamoureux, Kumari Sonal Choudhary, Zachary A King, Troy E Sandberg, Ye Gao, Anand V Sastry, Patrick V Phaneuf, Donghui Choe, Byung-Kwan Cho, Bernhard O Palsson | Nucleic Acids Research | 2020-09-23 |
| The Pseudomonas aeruginosa protease LasB directly activates IL-1β. | Josh Sun, Doris L LaRock, Elaine A Skowronski, Jacqueline M Kimmey, Joshua Olson, Zhenze Jiang, Anthony J O'Donoghue, Victor Nizet, Christopher N LaRock | EBioMedicine | 2020-09-23 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Journal Of Clinical Microbiology | 2020-09-22 |
| CD8 T cells drive anorexia, dysbiosis, and blooms of a commensal with immunosuppressive potential after viral infection. | Lara Labarta-Bajo, Anna Gramalla-Schmitz, Romana R Gerner, Katelynn R Kazane, Gregory Humphrey, Tara Schwartz, Karenina Sanders, Austin Swafford, Rob Knight, Manuela Raffatellu, Elina I Zúñiga | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-09-21 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Antimicrobial Agents And Chemotherapy | 2020-09-21 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Infection And Immunity | 2020-09-18 |
| Antigen-Specific Adaptive Immunity to SARS-CoV-2 in Acute COVID-19 and Associations with Age and Disease Severity. | Carolyn Rydyznski Moderbacher, Sydney I Ramirez, Jennifer M Dan, Alba Grifoni, Kathryn M Hastie, Daniela Weiskopf, Simon Belanger, Robert K Abbott, Christina Kim, Jinyong Choi, Yu Kato, Eleanor G Crotty, Cheryl Kim, Stephen A Rawlings, Jose Mateus, Long Ping Victor Tse, April Frazier, Ralph Baric, Bjoern Peters, Jason Greenbaum, Erica Ollmann Saphire, Davey M Smith, Alessandro Sette, Shane Crotty | Cell | 2020-09-16 |
| Biomolecular Simulations in the Time of COVID19, and After. | Rommie E Amaro, Adrian J Mulholland | Computing In Science & Engineering | 2020-09-15 |
| iModulonDB: a knowledgebase of microbial transcriptional regulation derived from machine learning. | Kevin Rychel, Katherine Decker, Anand V Sastry, Patrick V Phaneuf, Saugat Poudel, Bernhard O Palsson | Nucleic Acids Research | 2020-09-15 |
| HIV Care Prioritization Using Phylogenetic Branch Length. | Niema Moshiri, Davey M Smith, Siavash Mirarab | Journal Of Acquired Immune Deficiency Syndromes (1999) | 2020-09-14 |
| MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets. | Meena Choi, Jeremy Carver, Cristina Chiva, Manuel Tzouros, Ting Huang, Tsung-Heng Tsai, Benjamin Pullman, Oliver M Bernhardt, Ruth Hüttenhain, Guo Ci Teo, Yasset Perez-Riverol, Jan Muntel, Maik Müller, Sandra Goetze, Maria Pavlou, Erik Verschueren, Bernd Wollscheid, Alexey I Nesvizhskii, Lukas Reiter, Tom Dunkley, Eduard Sabidó, Nuno Bandeira, Olga Vitek | Nature Methods | 2020-09-14 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Molecular And Cellular Biology | 2020-09-14 |
| Genetic examination of the marine bacterium Pseudoalteromonas luteoviolacea and effects of its metamorphosis-inducing factors. | Amanda T Alker, Nathalie Delherbe, Trevor N Purdy, Bradley S Moore, Nicholas J Shikuma | Environmental Microbiology | 2020-09-13 |
| Shining Light on the COVID-19 Pandemic: A Vitamin D Receptor Checkpoint in Defense of Unregulated Wound Healing. | Ronald M Evans, Scott M Lippman | Cell Metabolism | 2020-09-11 |
| From intestinal dysbiosis to alcohol-associated liver disease. | Beatriz Garcia Mendes, Bernd Schnabl | Clinical And Molecular Hepatology | 2020-09-11 |
| Complementary Genomic, Bioinformatics, and Chemical Approaches Facilitate the Absolute Structure Assignment of Ionostatin, a Linear Polyketide from a Rare Marine-Derived Actinomycete. | Min Cheol Kim, Jaclyn M Winter, Reiko Cullum, Zhifei Li, William Fenical | ACS Chemical Biology | 2020-09-09 |
| The microbiota in cirrhosis and its role in hepatic decompensation. | Jonel Trebicka, Jane Macnaughtan, Bernd Schnabl, Debbie L Shawcross, Jasmohan S Bajaj | Journal Of Hepatology | 2020-09-08 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Journal Of Bacteriology | 2020-09-08 |
| Recommendations for measuring HIV reservoir size in cure-directed clinical trials. | Mohamed Abdel-Mohsen, Douglas Richman, Robert F Siliciano, Michel C Nussenzweig, Bonnie J Howell, Javier Martinez-Picado, Nicolas Chomont, Katharine J Bar, Xu G Yu, Mathias Lichterfeld, Jose Alcami, Daria Hazuda, Frederic Bushman, Janet D Siliciano, Michael R Betts, Adam M Spivak, Vicente Planelles, Beatrice H Hahn, Davey M Smith, Ya-Chi Ho, Maria J Buzon, Christian Gaebler, Mirko Paiardini, Qingsheng Li, Jacob D Estes, Thomas J Hope, Jay Kostman, Karam Mounzer, Marina Caskey, Lawrence Fox, Ian Frank, James L Riley, Pablo Tebas, Luis J Montaner, | Nature Medicine | 2020-09-07 |
| Lactose-reduced infant formula with added corn syrup solids is associated with a distinct gut microbiota in Hispanic infants. | Roshonda B Jones, Paige K Berger, Jasmine F Plows, Tanya L Alderete, Joshua Millstein, Jennifer Fogel, Stanislav N Iablokov, Dmitry A Rodionov, Andrei L Osterman, Lars Bode, Michael I Goran | Gut Microbes | 2020-09-05 |
| ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy. | Chao Zhang, Celine Scornavacca, Erin K Molloy, Siavash Mirarab | Molecular Biology And Evolution | 2020-09-05 |
| Lactobacillus commensals autochthonous to human milk have the hallmarks of potent probiotics. | Jasia Anjum, Shahid Nazir, Muhammad Tariq, Kim Barrett, Arsalan Zaidi | Microbiology (Reading, England) | 2020-09-04 |
| Cost-effectiveness analysis of pre-exposure prophylaxis for the prevention of HIV in men who have sex with men in South Korea: a mathematical modelling study. | Heun Choi, Jiyeon Suh, Woonji Lee, Jun Hyoung Kim, Jung Ho Kim, Hye Seong, Jin Young Ahn, Su Jin Jeong, Nam Su Ku, Yoon Soo Park, Joon Sup Yeom, Changsoo Kim, Hee-Dae Kwon, Davey M Smith, Jeehyun Lee, Jun Yong Choi | Scientific Reports | 2020-09-03 |
| Genome Mining, Microbial Interactions, and Molecular Networking Reveals New Dibromoalterochromides from Strains of of Coiba National Park-Panama. | Librada A Atencio, Cristopher A Boya P, Christian Martin H, Luis C Mejía, Pieter C Dorrestein, Marcelino Gutiérrez | Marine Drugs | 2020-09-03 |
| Suppression of local type I interferon by gut microbiota-derived butyrate impairs antitumor effects of ionizing radiation. | Kaiting Yang, Yuzhu Hou, Yuan Zhang, Hua Liang, Anukriti Sharma, Wenxin Zheng, Liangliang Wang, Rolando Torres, Ken Tatebe, Steven J Chmura, Sean P Pitroda, Jack A Gilbert, Yang-Xin Fu, Ralph R Weichselbaum | The Journal Of Experimental Medicine | 2020-09-03 |
| Chemical composition of material extractives influences microbial growth and dynamics on wetted wood materials. | Dan Zhao, Cesar Cardona, Neil Gottel, Valerie J Winton, Paul M Thomas, Daniel A Raba, Scott T Kelley, Christopher Henry, Jack A Gilbert, Brent Stephens | Scientific Reports | 2020-09-02 |
| Discovery and Verification of Extracellular miRNA Biomarkers for Non-invasive Prediction of Pre-eclampsia in Asymptomatic Women. | Srimeenakshi Srinivasan, Ryan Treacy, Tiffany Herrero, Richelle Olsen, Trevor R Leonardo, Xuan Zhang, Peter DeHoff, Cuong To, Lara G Poling, Aileen Fernando, Sandra Leon-Garcia, Katharine Knepper, Vy Tran, Morgan Meads, Jennifer Tasarz, Aishwarya Vuppala, Soojin Park, Clara D Laurent, Tony Bui, Pike See Cheah, Rachael Tabitha Overcash, Gladys A Ramos, Hilary Roeder, Ionita Ghiran, Mana Parast, , Xandra O Breakefield, Amir J Lueth, Sharon R Rust, Max T Dufford, Angela C Fox, Durlin E Hickok, Julja Burchard, J Jay Boniface, Louise C Laurent | Cell Reports. Medicine | 2020-09-01 |
| B cells expressing authentic naive human VRC01-class BCRs can be recruited to germinal centers and affinity mature in multiple independent mouse models. | Deli Huang, Robert K Abbott, Colin Havenar-Daughton, Patrick D Skog, Rita Al-Kolla, Bettina Groschel, Tanya R Blane, Sergey Menis, Jenny Tuyet Tran, Theresa C Thinnes, Sabrina A Volpi, Alessia Liguori, Torben Schiffner, Sophia M Villegas, Oleksandr Kalyuzhniy, Mark Pintea, James E Voss, Nicole Phelps, Ryan Tingle, Alberto R Rodriguez, Greg Martin, Sergey Kupryianov, Allan deCamp, William R Schief, David Nemazee, Shane Crotty | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-09-01 |
| Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers. | David Heckmann, Anaamika Campeau, Colton J Lloyd, Patrick V Phaneuf, Ying Hefner, Marvic Carrillo-Terrazas, Adam M Feist, David J Gonzalez, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-09-01 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Applied And Environmental Microbiology | 2020-09-01 |
| Iron at the host-microbe interface. | Romana R Gerner, Sean-Paul Nuccio, Manuela Raffatellu | Molecular Aspects Of Medicine | 2020-09-01 |
| Context-aware dimensionality reduction deconvolutes gut microbial community dynamics. | Cameron Martino, Liat Shenhav, Clarisse A Marotz, George Armstrong, Daniel McDonald, Yoshiki Vázquez-Baeza, James T Morton, Lingjing Jiang, Maria Gloria Dominguez-Bello, Austin D Swafford, Eran Halperin, Rob Knight | Nature Biotechnology | 2020-08-31 |
| Quantitative profiling of built environment bacterial and fungal communities reveals dynamic material dependent growth patterns and microbial interactions. | Ying Xu, Ruby Tandon, Chrislyn Ancheta, Pablo Arroyo, Jack A Gilbert, Brent Stephens, Scott T Kelley | Indoor Air | 2020-08-28 |
| Multifaceted Effects of Antigen Valency on B Cell Response Composition and Differentiation In Vivo. | Yu Kato, Robert K Abbott, Brian L Freeman, Sonya Haupt, Bettina Groschel, Murillo Silva, Sergey Menis, Darrell J Irvine, William R Schief, Shane Crotty | Immunity | 2020-08-27 |
| Association of Body Mass Index with Fecal Microbial Diversity and Metabolites in the Northern Finland Birth Cohort. | Erikka Loftfield, Karl-Heinz Herzig, J Gregory Caporaso, Andriy Derkach, Yunhu Wan, Doratha A Byrd, Emily Vogtmann, Minna Männikkö, Ville Karhunen, Rob Knight, Marc J Gunter, Marjo-Riitta Järvelin, Rashmi Sinha | Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology | 2020-08-27 |
| HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers. | Shuling Ren, Daria A Gaykalova, Theresa Guo, Alexander V Favorov, Elana J Fertig, Pablo Tamayo, Juan Luis Callejas-Valera, Mike Allevato, Mara Gilardi, Jessica Santos, Takahito Fukusumi, Akihiro Sakai, Mizuo Ando, Sayed Sadat, Chao Liu, Guorong Xu, Kathleen M Fisch, Zhiyong Wang, Alfredo A Molinolo, J Silvio Gutkind, Trey Ideker, Wayne M Koch, Joseph A Califano | Oncogene | 2020-08-26 |
| Multidimensional Proteome Profiling of Blood-Brain Barrier Perturbation by Group B . | Anaamika Campeau, Robert H Mills, Marie Blanchette, Kaja Bajc, Mario Malfavon, Roeben N Munji, Liwen Deng, Bryan Hancock, Kathryn A Patras, Joshua Olson, Victor Nizet, Richard Daneman, Kelly Doran, David J Gonzalez | MSystems | 2020-08-25 |
| Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy. | Andrew Oliver, Brandon LaMere, Claudia Weihe, Stephen Wandro, Karen L Lindsay, Pathik D Wadhwa, David A Mills, David T Pride, Oliver Fiehn, Trent Northen, Markus de Raad, Huiying Li, Jennifer B H Martiny, Susan Lynch, Katrine Whiteson | MBio | 2020-08-25 |
| The Southern Bluefin Tuna Mucosal Microbiome Is Influenced by Husbandry Method, Net Pen Location, and Anti-parasite Treatment. | Jeremiah J Minich, Cecilia Power, Michaela Melanson, Rob Knight, Claire Webber, Kirsten Rough, Nathan J Bott, Barbara Nowak, Eric E Allen | Frontiers In Microbiology | 2020-08-24 |
| Fructose stimulated de novo lipogenesis is promoted by inflammation. | Jelena Todoric, Giuseppe Di Caro, Saskia Reibe, Darren C Henstridge, Courtney R Green, Alison Vrbanac, Fatih Ceteci, Claire Conche, Reginald McNulty, Shabnam Shalapour, Koji Taniguchi, Peter J Meikle, Jeramie D Watrous, Rafael Moranchel, Mahan Najhawan, Mohit Jain, Xiao Liu, Tatiana Kisseleva, Maria T Diaz-Meco, Jorge Moscat, Rob Knight, Florian R Greten, Lester F Lau, Christian M Metallo, Mark A Febbraio, Michael Karin | Nature Metabolism | 2020-08-24 |
| Feature-based molecular networking in the GNPS analysis environment. | Louis-Félix Nothias, Daniel Petras, Robin Schmid, Kai Dührkop, Johannes Rainer, Abinesh Sarvepalli, Ivan Protsyuk, Madeleine Ernst, Hiroshi Tsugawa, Markus Fleischauer, Fabian Aicheler, Alexander A Aksenov, Oliver Alka, Pierre-Marie Allard, Aiko Barsch, Xavier Cachet, Andres Mauricio Caraballo-Rodriguez, Ricardo R Da Silva, Tam Dang, Neha Garg, Julia M Gauglitz, Alexey Gurevich, Giorgis Isaac, Alan K Jarmusch, Zdeněk Kameník, Kyo Bin Kang, Nikolas Kessler, Irina Koester, Ansgar Korf, Audrey Le Gouellec, Marcus Ludwig, Christian Martin H, Laura-Isobel McCall, Jonathan McSayles, Sven W Meyer, Hosein Mohimani, Mustafa Morsy, Oriane Moyne, Steffen Neumann, Heiko Neuweger, Ngoc Hung Nguyen, Melissa Nothias-Esposito, Julien Paolini, Vanessa V Phelan, Tomáš Pluskal, Robert A Quinn, Simon Rogers, Bindesh Shrestha, Anupriya Tripathi, Justin J J van der Hooft, Fernando Vargas, Kelly C Weldon, Michael Witting, Heejung Yang, Zheng Zhang, Florian Zubeil, Oliver Kohlbacher, Sebastian Böcker, Theodore Alexandrov, Nuno Bandeira, Mingxun Wang, Pieter C Dorrestein | Nature Methods | 2020-08-24 |
| Evaluation for SARS-CoV-2 in Breast Milk From 18 Infected Women. | Christina Chambers, Paul Krogstad, Kerri Bertrand, Deisy Contreras, Nicole H Tobin, Lars Bode, Grace Aldrovandi | JAMA | 2020-08-22 |
| Sustained attention and vigilance deficits associated with HIV and a history of methamphetamine dependence. | Nina Pocuca, Jared W Young, David A MacQueen, Scott Letendre, Robert K Heaton, Mark A Geyer, William Perry, Igor Grant, Arpi Minassian, | Drug And Alcohol Dependence | 2020-08-22 |
| Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates. | Joana Damas, Graham M Hughes, Kathleen C Keough, Corrie A Painter, Nicole S Persky, Marco Corbo, Michael Hiller, Klaus-Peter Koepfli, Andreas R Pfenning, Huabin Zhao, Diane P Genereux, Ross Swofford, Katherine S Pollard, Oliver A Ryder, Martin T Nweeia, Kerstin Lindblad-Toh, Emma C Teeling, Elinor K Karlsson, Harris A Lewin | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-08-21 |
| Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. | Jeremiah Minich, Farhana Ali, Clarisse Marotz, Pedro Belda-Ferre, Leslie Chiang, Justin P Shaffer, Carolina S Carpenter, Daniel McDonald, Jack Gilbert, Sarah M Allard, Eric E Allen, Rob Knight, Daniel A Sweeney, Austin D Swafford | Research Square | 2020-08-18 |
| Microbe-Metabolite Associations Linked to the Rebounding Murine Gut Microbiome Postcolonization with Vancomycin-Resistant Enterococcus faecium. | Andre Mu, Glen P Carter, Lucy Li, Nicole S Isles, Alison F Vrbanac, James T Morton, Alan K Jarmusch, David P De Souza, Vinod K Narayana, Komal Kanojia, Brunda Nijagal, Malcolm J McConville, Rob Knight, Benjamin P Howden, Timothy P Stinear | MSystems | 2020-08-18 |
| N-glycolyl chondroitin synthesis using metabolically engineered E. coli. | Adeola E Awofiranye, Sultan N Baytas, Ke Xia, Abinaya Badri, Wenqin He, Ajit Varki, Mattheos Koffas, Robert J Linhardt | AMB Express | 2020-08-17 |
| ReDU: a framework to find and reanalyze public mass spectrometry data. | Alan K Jarmusch, Mingxun Wang, Christine M Aceves, Rohit S Advani, Shaden Aguirre, Alexander A Aksenov, Gajender Aleti, Allegra T Aron, Anelize Bauermeister, Sanjana Bolleddu, Amina Bouslimani, Andres Mauricio Caraballo Rodriguez, Rama Chaar, Roxana Coras, Emmanuel O Elijah, Madeleine Ernst, Julia M Gauglitz, Emily C Gentry, Makhai Husband, Scott A Jarmusch, Kenneth L Jones, Zdenek Kamenik, Audrey Le Gouellec, Aileen Lu, Laura-Isobel McCall, Kerry L McPhail, Michael J Meehan, Alexey V Melnik, Riya C Menezes, Yessica Alejandra Montoya Giraldo, Ngoc Hung Nguyen, Louis Felix Nothias, Mélissa Nothias-Esposito, Morgan Panitchpakdi, Daniel Petras, Robert A Quinn, Nicole Sikora, Justin J J van der Hooft, Fernando Vargas, Alison Vrbanac, Kelly C Weldon, Rob Knight, Nuno Bandeira, Pieter C Dorrestein | Nature Methods | 2020-08-17 |
| Ur-ine Old Age: Urinary Microbiome of Older Community Dwelling Women. | Alan J Wolfe, Linda Brubaker | Cell Host & Microbe | 2020-08-14 |
| Vaginal estrogen therapy is associated with increased Lactobacillus in the urine of postmenopausal women with overactive bladder symptoms. | Krystal Thomas-White, Susanne Taege, Roberto Limeira, Cynthia Brincat, Cara Joyce, Evann E Hilt, Laura Mac-Daniel, Katherine A Radek, Linda Brubaker, Elizabeth R Mueller, Alan J Wolfe | American Journal Of Obstetrics And Gynecology | 2020-08-11 |
| Genome-Scale Metabolic Model of pv. : An Approach to Elucidate Pathogenicity at the Metabolic Level. | David Botero, Jonathan Monk, María Juliana Rodríguez Cubillos, Andrés Rodríguez Cubillos, Mariana Restrepo, Vivian Bernal-Galeano, Alejandro Reyes, Andrés González Barrios, Bernhard Ø Palsson, Silvia Restrepo, Adriana Bernal | Frontiers In Genetics | 2020-08-11 |
| System-level understanding of gene expression and regulation for engineering secondary metabolite production in Streptomyces. | Yongjae Lee, Namil Lee, Soonkyu Hwang, Kangsan Kim, Woori Kim, Jihun Kim, Suhyung Cho, Bernhard O Palsson, Byung-Kwan Cho | Journal Of Industrial Microbiology & Biotechnology | 2020-08-10 |
| Synthetic cross-phyla gene replacement and evolutionary assimilation of major enzymes. | Troy E Sandberg, Richard Szubin, Patrick V Phaneuf, Bernhard O Palsson | Nature Ecology & Evolution | 2020-08-10 |
| No Evidence of SARS-CoV-2 Seminal Shedding Despite SARS-CoV-2 Persistence in the Upper Respiratory Tract. | Stephen A Rawlings, Caroline Ignacio, Magali Porrachia, Pinyi Du, Davey M Smith, Antoine Chaillon | Open Forum Infectious Diseases | 2020-08-07 |
| Active Microneedle Administration of Plant Virus Nanoparticles for Cancer Vaccination Improves Immunotherapeutic Efficacy. | Christine E Boone, Chao Wang, Miguel Angel Lopez-Ramirez, Veronique Beiss, Sourabh Shukla, Paul L Chariou, Daniel Kupor, Ricardo Rueda, Joseph Wang, Nicole F Steinmetz | ACS Applied Nano Materials | 2020-08-07 |
| Targeting HIV Env immunogens to B cell follicles in nonhuman primates through immune complex or protein nanoparticle formulations. | Jacob T Martin, Christopher A Cottrell, Aleksandar Antanasijevic, Diane G Carnathan, Benjamin J Cossette, Chiamaka A Enemuo, Etse H Gebru, Yury Choe, Federico Viviano, Stephanie Fischinger, Talar Tokatlian, Kimberly M Cirelli, George Ueda, Jeffrey Copps, Torben Schiffner, Sergey Menis, Galit Alter, William R Schief, Shane Crotty, Neil P King, David Baker, Guido Silvestri, Andrew B Ward, Darrell J Irvine | NPJ Vaccines | 2020-08-05 |
| Targeting HIV Env immunogens to B cell follicles in nonhuman primates through immune complex or protein nanoparticle formulations. | Jacob T Martin, Christopher A Cottrell, Aleksandar Antanasijevic, Diane G Carnathan, Benjamin J Cossette, Chiamaka A Enemuo, Etse H Gebru, Yury Choe, Federico Viviano, Stephanie Fischinger, Talar Tokatlian, Kimberly M Cirelli, George Ueda, Jeffrey Copps, Torben Schiffner, Sergey Menis, Galit Alter, William R Schief, Shane Crotty, Neil P King, David Baker, Guido Silvestri, Andrew B Ward, Darrell J Irvine | NPJ Vaccines | 2020-08-05 |
| Cutaneous innate immune tolerance is mediated by epigenetic control of MAP2K3 by HDAC8/9. | Yu Sawada, Teruaki Nakatsuji, Tatsuya Dokoshi, Nikhil Nitin Kulkarni, Marc C Liggins, George Sen, Richard L Gallo | Science Immunology | 2020-08-05 |
| Selective and cross-reactive SARS-CoV-2 T cell epitopes in unexposed humans. | Jose Mateus, Alba Grifoni, Alison Tarke, John Sidney, Sydney I Ramirez, Jennifer M Dan, Zoe C Burger, Stephen A Rawlings, Davey M Smith, Elizabeth Phillips, Simon Mallal, Marshall Lammers, Paul Rubiro, Lorenzo Quiambao, Aaron Sutherland, Esther Dawen Yu, Ricardo da Silva Antunes, Jason Greenbaum, April Frazier, Alena J Markmann, Lakshmanane Premkumar, Aravinda de Silva, Bjoern Peters, Shane Crotty, Alessandro Sette, Daniela Weiskopf | Science (New York, N.Y.) | 2020-08-04 |
| Linking metabolic phenotypes to pathogenic traits among "Candidatus Liberibacter asiaticus" and its hosts. | Cristal Zuñiga, Beth Peacock, Bo Liang, Greg McCollum, Sonia C Irigoyen, Diego Tec-Campos, Clarisse Marotz, Nien-Chen Weng, Alejandro Zepeda, Georgios Vidalakis, Kranthi K Mandadi, James Borneman, Karsten Zengler | NPJ Systems Biology And Applications | 2020-08-04 |
| Deficiency of Intestinal α1-2-Fucosylation Exacerbates Ethanol-Induced Liver Disease in Mice. | Rongrong Zhou, Cristina Llorente, Jinling Cao, Bei Gao, Yi Duan, Lu Jiang, Yanhan Wang, Vipin Kumar, Peter Stärkel, Lars Bode, Xuegong Fan, Bernd Schnabl | Alcoholism, Clinical And Experimental Research | 2020-08-02 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Microbiology Spectrum | 2020-08-02 |
| Women Physicians and the COVID-19 Pandemic. | Linda Brubaker | JAMA | 2020-08-01 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Journal Of Microbiology & Biology Education | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | MSystems | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | MSphere | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Microbiology And Molecular Biology Reviews : MMBR | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | MBio | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Microbiology Resource Announcements | 2020-07-31 |
| The ASM Journals Committee Values the Contributions of Black Microbiologists. | Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik | Clinical Microbiology Reviews | 2020-07-31 |
| Synthetic microbial communities of heterotrophs and phototrophs facilitate sustainable growth. | Cristal Zuñiga, Tingting Li, Michael T Guarnieri, Jackson P Jenkins, Chien-Ting Li, Kerem Bingol, Young-Mo Kim, Michael J Betenbaugh, Karsten Zengler | Nature Communications | 2020-07-30 |
| Microbiome and Metagenome Analyses of a Closed Habitat during Human Occupation. | Ganesh Babu Malli Mohan, Ceth W Parker, Camilla Urbaniak, Nitin K Singh, Anthony Hood, Jeremiah J Minich, Rob Knight, Michelle Rucker, Kasthuri Venkateswaran | MSystems | 2020-07-28 |
| Marine microbial natural products: the evolution of a new field of science. | William Bill Fenical | The Journal Of Antibiotics | 2020-07-27 |
| Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity. | Patrick V Phaneuf, James T Yurkovich, David Heckmann, Muyao Wu, Troy E Sandberg, Zachary A King, Justin Tan, Bernhard O Palsson, Adam M Feist | BMC Genomics | 2020-07-25 |
| MicroRNAs and Their Targetomes in Tumor-Immune Communication. | Sunglim Cho, Jesse W Tai, Li-Fan Lu | Cancers | 2020-07-24 |
| Six novel species of the obligate marine actinobacterium , sp. nov., sp. nov., sp. nov., sp. nov., sp. nov. and sp. nov., and emended description of the genus . | Brenda Román-Ponce, Natalie Millán-Aguiñaga, Dulce Guillen-Matus, Alexander B Chase, Joape G M Ginigini, Katy Soapi, Klaus D Feussner, Paul R Jensen, Martha E Trujillo | International Journal Of Systematic And Evolutionary Microbiology | 2020-07-23 |
| Facing the Change Together: Reflections of Coping and Resilience From American Geriatric Psychiatrists During COVID-19. | Carmen Black Parker, Malcolm P Forbes, Ipsit V Vahia, Brent P Forester, Dilip V Jeste, Charles F Reynolds | The American Journal Of Geriatric Psychiatry : Official Journal Of The American Association For Geriatric Psychiatry | 2020-07-23 |
| Facing the change together: reflections of coping and resilience from American geriatric psychiatrists during COVID-19. | Carmen Black Parker, Malcolm P Forbes, Ipsit V Vahia, Brent P Forester, Dilip V Jeste, Charles F Reynolds | International Psychogeriatrics | 2020-07-23 |
| Biomarkers for the Discrimination of Acute Kawasaki Disease From Infections in Childhood. | Judith Zandstra, Annemarie van de Geer, Michael W T Tanck, Diana van Stijn-Bringas Dimitriades, Cathelijn E M Aarts, Sanne M Dietz, Robin van Bruggen, Nina A Schweintzger, Werner Zenz, Marieke Emonts, Dace Zavadska, Marko Pokorn, Effua Usuf, Henriette A Moll, Luregn J Schlapbach, Enitan D Carrol, Stephane Paulus, Maria Tsolia, Colin Fink, Shunmay Yeung, Chisato Shimizu, Adriana Tremoulet, Rachel Galassini, Victoria J Wright, Federico Martinón-Torres, Jethro Herberg, Jane Burns, Michael Levin, Taco W Kuijpers, | Frontiers In Pediatrics | 2020-07-22 |
| Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals. | Joonatan Palmu, Aaro Salosensaari, Aki S Havulinna, Susan Cheng, Michael Inouye, Mohit Jain, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Erkki Vartiainen, Tiina Laatikainen, Pekka Jousilahti, Veikko Salomaa, Rob Knight, Leo Lahti, Teemu J Niiranen | Journal Of The American Heart Association | 2020-07-21 |
| Virulence as a Side Effect of Interspecies Interaction in Coral Pathogens. | Esther Rubio-Portillo, Ana B Martin-Cuadrado, Andrés M Caraballo-Rodríguez, Forest Rohwer, Pieter C Dorrestein, Josefa Antón | MBio | 2020-07-21 |
| T4 Pili Promote Colonization and Immune Evasion Phenotypes of Nonencapsulated M4 Streptococcus pyogenes. | Yi-Hsuan Chen, Shao-Hui Li, Yao-Cheng Yang, Shu-Hao Hsu, Victor Nizet, Yung-Chi Chang | MBio | 2020-07-21 |
| Changes in the fecal bacterial microbiota associated with disease severity in alcoholic hepatitis patients. | Sonja Lang, Bradley Fairfied, Bei Gao, Yi Duan, Xinlian Zhang, Derrick E Fouts, Bernd Schnabl | Gut Microbes | 2020-07-20 |
| Antibiotics and Innate Immunity: A Cooperative Effort Toward the Successful Treatment of Infections. | Andrew Berti, Warren Rose, Victor Nizet, George Sakoulas | Open Forum Infectious Diseases | 2020-07-20 |
| In Reply: Navigating personal risk in rhinologic surgery during the COVID-19 pandemic. | Adam S DeConde, Carol H Yan, Robert P DeConde | International Forum Of Allergy & Rhinology | 2020-07-19 |
| Pathogen Interference: Targeting Virulence Factors to Tackle Intracellular Microbes. | Michael H Lee, Sean-Paul Nuccio, Manuela Raffatellu | Cell Chemical Biology | 2020-07-18 |
| Evolutionary stalling and a limit on the power of natural selection to improve a cellular module. | Sandeep Venkataram, Ross Monasky, Shohreh H Sikaroodi, Sergey Kryazhimskiy, Betul Kacar | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-07-17 |
| Transcriptomic Profiling Identifies Novel Hepatic and Intestinal Genes Following Chronic Plus Binge Ethanol Feeding in Mice. | Lu Jiang, Huikuan Chu, Bei Gao, Sonja Lang, Yanhan Wang, Yi Duan, Bernd Schnabl | Digestive Diseases And Sciences | 2020-07-15 |
| Redefining fundamental concepts of transcription initiation in bacteria. | Citlalli Mejía-Almonte, Stephen J W Busby, Joseph T Wade, Jacques van Helden, Adam P Arkin, Gary D Stormo, Karen Eilbeck, Bernhard O Palsson, James E Galagan, Julio Collado-Vides | Nature Reviews. Genetics | 2020-07-14 |
| Telomere-to-telomere assembly of a complete human X chromosome. | Karen H Miga, Sergey Koren, Arang Rhie, Mitchell R Vollger, Ariel Gershman, Andrey Bzikadze, Shelise Brooks, Edmund Howe, David Porubsky, Glennis A Logsdon, Valerie A Schneider, Tamara Potapova, Jonathan Wood, William Chow, Joel Armstrong, Jeanne Fredrickson, Evgenia Pak, Kristof Tigyi, Milinn Kremitzki, Christopher Markovic, Valerie Maduro, Amalia Dutra, Gerard G Bouffard, Alexander M Chang, Nancy F Hansen, Amy B Wilfert, Françoise Thibaud-Nissen, Anthony D Schmitt, Jon-Matthew Belton, Siddarth Selvaraj, Megan Y Dennis, Daniela C Soto, Ruta Sahasrabudhe, Gulhan Kaya, Josh Quick, Nicholas J Loman, Nadine Holmes, Matthew Loose, Urvashi Surti, Rosa Ana Risques, Tina A Graves Lindsay, Robert Fulton, Ira Hall, Benedict Paten, Kerstin Howe, Winston Timp, Alice Young, James C Mullikin, Pavel A Pevzner, Jennifer L Gerton, Beth A Sullivan, Evan E Eichler, Adam M Phillippy | Nature | 2020-07-14 |
| Shaping an Endospore: Architectural Transformations During Sporulation. | Kanika Khanna, Javier Lopez-Garrido, Kit Pogliano | Annual Review Of Microbiology | 2020-07-13 |
| Breastmilk Feeding Practices Are Associated with the Co-Occurrence of Bacteria in Mothers' Milk and the Infant Gut: the CHILD Cohort Study. | Kelsey Fehr, Shirin Moossavi, Hind Sbihi, Rozlyn C T Boutin, Lars Bode, Bianca Robertson, Chloe Yonemitsu, Catherine J Field, Allan B Becker, Piushkumar J Mandhane, Malcolm R Sears, Ehsan Khafipour, Theo J Moraes, Padmaja Subbarao, B Brett Finlay, Stuart E Turvey, Meghan B Azad | Cell Host & Microbe | 2020-07-10 |
| Metagenome Data on Intestinal Phage-Bacteria Associations Aids the Development of Phage Therapy against Pathobionts. | Kosuke Fujimoto, Yasumasa Kimura, Masaki Shimohigoshi, Takeshi Satoh, Shintaro Sato, Georg Tremmel, Miho Uematsu, Yunosuke Kawaguchi, Yuki Usui, Yoshiko Nakano, Tetsuya Hayashi, Koji Kashima, Yoshikazu Yuki, Kiyoshi Yamaguchi, Yoichi Furukawa, Masanori Kakuta, Yutaka Akiyama, Rui Yamaguchi, Sheila E Crowe, Peter B Ernst, Satoru Miyano, Hiroshi Kiyono, Seiya Imoto, Satoshi Uematsu | Cell Host & Microbe | 2020-07-10 |
| Pre-existing immunity to SARS-CoV-2: the knowns and unknowns. | Alessandro Sette, Shane Crotty | Nature Reviews. Immunology | 2020-07-09 |
| Intestinal Virome Signature Associated With Severity of Nonalcoholic Fatty Liver Disease. | Sonja Lang, Münevver Demir, Anna Martin, Lu Jiang, Xinlian Zhang, Yi Duan, Bei Gao, Hilmar Wisplinghoff, Philipp Kasper, Christoph Roderburg, Frank Tacke, Hans-Michael Steffen, Tobias Goeser, Juan G Abraldes, Xin M Tu, Rohit Loomba, Peter Stärkel, David Pride, Derrick E Fouts, Bernd Schnabl | Gastroenterology | 2020-07-09 |
| Impact of insertion sequences on convergent evolution of Shigella species. | Jane Hawkey, Jonathan M Monk, Helen Billman-Jacobe, Bernhard Palsson, Kathryn E Holt | PLoS Genetics | 2020-07-09 |
| Microbial Products and Metabolites Contributing to Alcohol-Related Liver Disease. | Bei Gao, Atoosa Emami, Shilpa Nath, Bernd Schnabl | Molecular Nutrition & Food Research | 2020-07-07 |
| Staphylococcus epidermidis protease EcpA can be a deleterious component of the skin microbiome in atopic dermatitis. | Laura Cau, Michael R Williams, Anna M Butcher, Teruaki Nakatsuji, Jeffrey S Kavanaugh, Joyce Y Cheng, Faiza Shafiq, Kyle Higbee, Tissa R Hata, Alexander R Horswill, Richard L Gallo | The Journal Of Allergy And Clinical Immunology | 2020-07-04 |
| Revealing 29 sets of independently modulated genes in , their regulators, and role in key physiological response. | Saugat Poudel, Hannah Tsunemoto, Yara Seif, Anand V Sastry, Richard Szubin, Sibei Xu, Henrique Machado, Connor A Olson, Amitesh Anand, Joe Pogliano, Victor Nizet, Bernhard O Palsson | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2020-07-02 |
| A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis. | Tae Gyu Oh, Susy M Kim, Cyrielle Caussy, Ting Fu, Jian Guo, Shirin Bassirian, Seema Singh, Egbert V Madamba, Ricki Bettencourt, Lisa Richards, Ruth T Yu, Annette R Atkins, Tao Huan, David A Brenner, Claude B Sirlin, Michael Downes, Ronald M Evans, Rohit Loomba | Cell Metabolism | 2020-06-30 |
| Reply. | Ashraf S Harahsheh, Nagib Dahdah, Jane W Newburger, Michael A Portman, Robert Tulloh, Brian W McCrindle, Rolando Cimaz, Jane C Burns | The Journal Of Pediatrics | 2020-06-30 |
| Inflammation in Mental Disorders: Is the Microbiota the Missing Link? | Sophie Ouabbou, Ying He, Keith Butler, Ming Tsuang | Neuroscience Bulletin | 2020-06-27 |
| Translating gene drive science to promote linguistic diversity in community and stakeholder engagement. | Cynthia Cheung, Stephanie Gamez, Rebeca Carballar-Lejarazú, Victor Ferman, Váleri N Vásquez, Gerard Terradas, Judy Ishikawa, Cynthia E Schairer, Ethan Bier, John M Marshall, Anthony A James, Omar S Akbari, Cinnamon S Bloss | Global Public Health | 2020-06-26 |
| Synoviocyte-targeted therapy synergizes with TNF inhibition in arthritis reversal. | Mattias N D Svensson, Martina Zoccheddu, Shen Yang, Gyrid Nygaard, Christian Secchi, Karen M Doody, Kamil Slowikowski, Fumitaka Mizoguchi, Frances Humby, Rebecca Hands, Eugenio Santelli, Cristiano Sacchetti, Kuninobu Wakabayashi, Dennis J Wu, Christopher Barback, Rizi Ai, Wei Wang, Gary P Sims, Piotr Mydel, Tsuyoshi Kasama, David L Boyle, Francesco Galimi, David Vera, Michel L Tremblay, Soumya Raychaudhuri, Michael B Brenner, Gary S Firestein, Costantino Pitzalis, Anna-Karin H Ekwall, Stephanie M Stanford, Nunzio Bottini | Science Advances | 2020-06-26 |
| Intestinal permeability, microbial translocation, changes in duodenal and fecal microbiota, and their associations with alcoholic liver disease progression in humans. | Luca Maccioni, Bei Gao, Sophie Leclercq, Boris Pirlot, Yves Horsmans, Philippe De Timary, Isabelle Leclercq, Derrick Fouts, Bernd Schnabl, Peter Stärkel | Gut Microbes | 2020-06-26 |
| Sierra Nevada mountain lake microbial communities are structured by temperature, resources and geographic location. | Marika A Schulhof, Andrew E Allen, Eric E Allen, Natalie Mladenov, John P McCrow, Natalie T Jones, Jessica Blanton, Hamanda B Cavalheri, Drishti Kaul, Celia C Symons, Jonathan B Shurin | Molecular Ecology | 2020-06-24 |
| In-Hospital Use of Statins Is Associated with a Reduced Risk of Mortality among Individuals with COVID-19. | Xiao-Jing Zhang, Juan-Juan Qin, Xu Cheng, Lijun Shen, Yan-Ci Zhao, Yufeng Yuan, Fang Lei, Ming-Ming Chen, Huilin Yang, Liangjie Bai, Xiaohui Song, Lijin Lin, Meng Xia, Feng Zhou, Jianghua Zhou, Zhi-Gang She, Lihua Zhu, Xinliang Ma, Qingbo Xu, Ping Ye, Guohua Chen, Liming Liu, Weiming Mao, Youqin Yan, Bing Xiao, Zhigang Lu, Gang Peng, Mingyu Liu, Jun Yang, Luyu Yang, Changjiang Zhang, Haofeng Lu, Xigang Xia, Daihong Wang, Xiaofeng Liao, Xiang Wei, Bing-Hong Zhang, Xin Zhang, Juan Yang, Guang-Nian Zhao, Peng Zhang, Peter P Liu, Rohit Loomba, Yan-Xiao Ji, Jiahong Xia, Yibin Wang, Jingjing Cai, Jiao Guo, Hongliang Li | Cell Metabolism | 2020-06-24 |
| A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes. | Sheila Podell, Jessica M Blanton, Aaron Oliver, Michelle A Schorn, Vinayak Agarwal, Jason S Biggs, Bradley S Moore, Eric E Allen | Microbiome | 2020-06-23 |
| High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy. | Ruma Raghuvanshi, Karla Vasco, Yoshiki Vázquez-Baeza, Lingjing Jiang, James T Morton, Danxun Li, Antonio Gonzalez, Lindsay DeRight Goldasich, Gregory Humphrey, Gail Ackermann, Austin D Swafford, Douglas Conrad, Rob Knight, Pieter C Dorrestein, Robert A Quinn | MSystems | 2020-06-23 |
| Bcl-6 is the nexus transcription factor of T follicular helper cells via repressor-of-repressor circuits. | Jinyong Choi, Huitian Diao, Caterina E Faliti, Jacquelyn Truong, Meghan Rossi, Simon Bélanger, Bingfei Yu, Ananda W Goldrath, Matthew E Pipkin, Shane Crotty | Nature Immunology | 2020-06-22 |
| Rationale and design of the Kidney Precision Medicine Project. | Ian H de Boer, Charles E Alpers, Evren U Azeloglu, Ulysses G J Balis, Jonathan M Barasch, Laura Barisoni, Kristina N Blank, Andrew S Bomback, Keith Brown, Pierre C Dagher, Ashveena L Dighe, Michael T Eadon, Tarek M El-Achkar, Joseph P Gaut, Nir Hacohen, Yongqun He, Jeffrey B Hodgin, Sanjay Jain, John A Kellum, Krzysztof Kiryluk, Richard Knight, Zoltan G Laszik, Chrysta Lienczewski, Laura H Mariani, Robyn L McClelland, Steven Menez, Dennis G Moledina, Sean D Mooney, John F O'Toole, Paul M Palevsky, Chirag R Parikh, Emilio D Poggio, Sylvia E Rosas, Matthew R Rosengart, Minnie M Sarwal, Jennifer A Schaub, John R Sedor, Kumar Sharma, Becky Steck, Robert D Toto, Olga G Troyanskaya, Katherine R Tuttle, Miguel A Vazquez, Sushrut S Waikar, Kayleen Williams, Francis Perry Wilson, Kun Zhang, Ravi Iyengar, Matthias Kretzler, Jonathan Himmelfarb, | Kidney International | 2020-06-22 |
| Fermentable fiber-induced hepatocellular carcinoma in mice recapitulates gene signatures found in human liver cancer. | Darshan Shimoga Chandrashekar, Rachel M Golonka, Beng San Yeoh, David J Gonzalez, Mathias Heikenwälder, Andrew T Gerwirtz, Sooryanarayana Varambally, Matam Vijay-Kumar | PloS One | 2020-06-19 |
| Functional Microbiomics Reveals Alterations of the Gut Microbiome and Host Co-Metabolism in Patients With Alcoholic Hepatitis. | Bei Gao, Yi Duan, Sonja Lang, Dinesh Barupal, Tsung-Chin Wu, Luis Valdiviez, Bryan Roberts, Ying Yng Choy, Tong Shen, Gregory Byram, Ying Zhang, Sili Fan, Benjamin Wancewicz, Yan Shao, Kevin Vervier, Yanhan Wang, Rongrong Zhou, Lu Jiang, Shilpa Nath, Rohit Loomba, Juan G Abraldes, Ramon Bataller, Xin M Tu, Peter Stärkel, Trevor D Lawley, Oliver Fiehn, Bernd Schnabl | Hepatology Communications | 2020-06-19 |
| Modulating the quantity of HIV Env-specific CD4 T cell help promotes rare B cell responses in germinal centers. | Jeong Hyun Lee, Joyce K Hu, Erik Georgeson, Catherine Nakao, Bettina Groschel, Thamotharampillai Dileepan, Marc K Jenkins, Gregory Seumois, Pandurangan Vijayanand, William R Schief, Shane Crotty | The Journal Of Experimental Medicine | 2020-06-17 |
| Streptococcus pyogenes upregulates arginine catabolism to exert its pathogenesis on the skin surface. | Yujiro Hirose, Masaya Yamaguchi, Tomoko Sumitomo, Masanobu Nakata, Tomoki Hanada, Daisuke Okuzaki, Daisuke Motooka, Yasushi Mori, Hiroshi Kawasaki, Alison Coady, Satoshi Uchiyama, Masanobu Hiraoka, Raymond H Zurich, Masayuki Amagai, Victor Nizet, Shigetada Kawabata | Cell Reports | 2020-06-17 |
| Harnessing Activin A Adjuvanticity to Promote Antibody Responses to BG505 HIV Envelope Trimers. | Diane G Carnathan, Kirti Kaushik, Ali H Ellebedy, Chiamaka A Enemuo, Etse H Gebru, Pallavi Dhadvai, Mohammed Ata Ur Rasheed, Matthias G Pauthner, Gabriel Ozorowski, Rafi Ahmed, Dennis R Burton, Andrew B Ward, Guido Silvestri, Shane Crotty, Michela Locci | Frontiers In Immunology | 2020-06-16 |
| Evaluation of SARS-CoV-2 in Breastmilk from 18 Infected Women. | Christina D Chambers, Paul Krogstad, Kerri Bertrand, Deisy Contreras, Nicole H Tobin, Lars Bode, Grace M Aldrovandi | MedRxiv : The Preprint Server For Health Sciences | 2020-06-16 |
| Isolation of potent SARS-CoV-2 neutralizing antibodies and protection from disease in a small animal model. | Thomas F Rogers, Fangzhu Zhao, Deli Huang, Nathan Beutler, Alison Burns, Wan-Ting He, Oliver Limbo, Chloe Smith, Ge Song, Jordan Woehl, Linlin Yang, Robert K Abbott, Sean Callaghan, Elijah Garcia, Jonathan Hurtado, Mara Parren, Linghang Peng, Sydney Ramirez, James Ricketts, Michael J Ricciardi, Stephen A Rawlings, Nicholas C Wu, Meng Yuan, Davey M Smith, David Nemazee, John R Teijaro, James E Voss, Ian A Wilson, Raiees Andrabi, Bryan Briney, Elise Landais, Devin Sok, Joseph G Jardine, Dennis R Burton | Science (New York, N.Y.) | 2020-06-15 |
| Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information. | Zhoutao Chen, Long Pham, Tsai-Chin Wu, Guoya Mo, Yu Xia, Peter L Chang, Devin Porter, Tan Phan, Huu Che, Hao Tran, Vikas Bansal, Justin Shaffer, Pedro Belda-Ferre, Greg Humphrey, Rob Knight, Pavel Pevzner, Son Pham, Yong Wang, Ming Lei | Genome Research | 2020-06-15 |
| CBASS Immunity Uses CARF-Related Effectors to Sense 3'-5'- and 2'-5'-Linked Cyclic Oligonucleotide Signals and Protect Bacteria from Phage Infection. | Brianna Lowey, Aaron T Whiteley, Alexander F A Keszei, Benjamin R Morehouse, Ian T Mathews, Sadie P Antine, Victor J Cabrera, Dmitry Kashin, Percy Niemann, Mohit Jain, Frank Schwede, John J Mekalanos, Sichen Shao, Amy S Y Lee, Philip J Kranzusch | Cell | 2020-06-15 |
| The selective PPAR-delta agonist seladelpar reduces ethanol-induced liver disease by restoring gut barrier function and bile acid homeostasis in mice. | Huikuan Chu, Lu Jiang, Bei Gao, Nagsen Gautam, Jawaher A Alamoudi, Sonja Lang, Yanhan Wang, Yi Duan, Yazen Alnouti, Edward E Cable, Bernd Schnabl | Translational Research : The Journal Of Laboratory And Clinical Medicine | 2020-06-15 |
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