These are the LAST 12 MONTHS of publications from the CMI membership team.
To see or search all of the publications, visit the archives page.
| Article | Authors | Journal | Date | Abstract | Reach |
|---|---|---|---|---|---|
| Multiomic analysis of ART-interruption cohorts identifies cell-extrinsic and -intrinsic mechanisms driving lymphocyte-mediated control of HIV rebound. | Tongcui Ma, Ashley F George, Zichong Li, Reuben Thomas, Kailin Yin, Min-Gyoung Shin, Mauricio Montano, Yusuke Matsui, Manickam Ashokkumar, Kyrlia Young, Julia Prigann, Julie Frouard, Sabrina Leddy, Maisha Adiba, Christina Herrde, Ulrike C Lange, Cedric Feschotte, Douglas F Nixon, Edward P Browne, Nancie M Archin, Jonathan Z Li, Davey Smith, Steven Deeks, Ole S Søgaard, Martin Tolstrup, Sulggi Lee, Satish K Pillai, Mohamed Abdel-Mohsen, Katherine S Pollard, Robert Siliciano, Melanie Ott, Warner C Greene, Nadia R Roan | Immunity | 2026-03-20 | Abstract | |
| Interplay between colorectal cancer-related lifestyles and the gut microbiome: an exploratory analysis of metagenomic data. | Rilla Tammi, Mirkka Maukonen, Niina E Kaartinen, Kari Koponen, Teemu Niiranen, Guillaume Méric, Demetrius Albanes, Johan G Eriksson, Pekka Jousilahti, Seppo Koskinen, Anne-Maria Pajari, Rob Knight, Aki S Havulinna, Veikko Salomaa, Satu Männistö | Cancer Causes & Control : CCC | 2026-03-11 | Abstract | |
| A human-derived Bacteroides strain attenuates depressive-like behavior in a rat model of social defeat-induced stress. | Marisol I Dothard, Mariaelena Caboni, Daniel Norment, Nolan Sigmund, Sarah M Allard, Jack A Gilbert, Ekaterina Gavrish, Gabriel Al-Ghalith, Andre Der-Avakian, Philip Strandwitz | BMC Medicine | 2026-03-10 | Abstract | |
| Revealing transcriptomic responses in during early antibiotic exposure. | Yuan Yuan, Ying Hefner, Richard Szubin, Jaemin Sung, Bernhard O Palsson | MSystems | 2026-03-10 | Abstract | |
| Host Proteome Remodeling during Group A Streptococcus Skin Infection. | Concepcion Sanchez, Igor H Wierzbicki, Charlie F Bayne, Jacquelyn C Castaneda, Jessica M Raygoza, David J Gonzalez | Molecular & Cellular Proteomics : MCP | 2026-03-04 | Abstract | |
| Human milk oligosaccharides promote synaptogenesis and neurite outgrowth in human cortical organoids. | Luisa Bulcão V C, Natalia C S Moreira, Paulo C Carvalho, Isabelle S Luz, Juliana de S da G Fischer, Blake L Tsu, Kristija Sejane, Celina Savo, Aline M A Martins, Lars Bode, Alysson R Muotri | Biochemistry And Biophysics Reports | 2026-02-28 | Abstract | |
| Effects of the signaling molecule cyclic-di-GMP on cyanobacterial circadian rhythm in PCC 7942. | Chihiro C Yamaguchi, Robert A Kanaly, Eri Nishizaki, Keiichi Yamashita, Koichiro Takatsuki, Yoshihiko Furuike, Mingxu Fang, Shuji Akiyama, Setsuyuki Aoki, Masaki Tsukamoto, Yoichi Nakahira, Susan S Golden, Shinsuke Kutsuna | Journal Of Bacteriology | 2026-02-27 | Abstract | |
| Potential role of bile acids as a microbiome-derived mechanism in synovitis of knee osteoarthritis synovitis. | Jessica D Murillo-Saich, Helena Mannochio-Russo, Marta Sala-Climent, Nathan Argel, Anna Quan, Michal Kalli Hose, Rocio Paz-Gonzalez, Meghana Akkati, Eric Chang, Adnan Cutuk, Emily Gentry, Roxana Coras, Nancy E Lane, Pieter C Dorrestein, Monica Guma | Osteoarthritis And Cartilage | 2026-02-26 | Abstract | |
| Tecovirimat for the Treatment of Mpox. | Jason Zucker, William A Fischer, Lu Zheng, Caitlyn McCarthy, Pooja T Saha, Arzhang Cyrus Javan, Alex Greninger, Matthew M Hamill, Kieron Leslie, Kristina M Brooks, Jonathan Berardi, Davey Smith, Lara Hosey, Grace Aldrovandi, Kathie Ferbas, Cheryl Day, Rachel A Bender Ignacio, Robert Bolan, Marshall J Glesby, Raphael J Landovitz, Anne F Luetkemeyer, Juan Sierra Madero, Rajesh T Gandhi, Sharon Nachman, Joe Eron, Judith S Currier, Timothy Wilkin, | The New England Journal Of Medicine | 2026-02-25 | Abstract | |
| Unlocking the Bile Acid Universe: Advanced Workflows and a Multidimensional Library of 280 Unique Species. | Guozhi Zhang, Emily C Vincent, Sadie M Disselkoen, James N Dodds, Quentin DuVal-Smith, Abubaker Patan, Ipsita Mohanty, Victoria Deleray, Jian Zhang, Paul A Thiessen, Evan E Bolton, Emma L Schymanski, Pieter C Dorrestein, Casey M Theriot, Erin S Baker | BioRxiv : The Preprint Server For Biology | 2026-02-19 | Abstract | |
| Design and rationale of RECOVER-AUTONOMIC: A randomized platform trial evaluating interventions for Long COVID postural orthostatic tachycardia syndrome. | Marat Fudim, Peter Novak, Pam R Taub, Tae Chung, Kanecia O Zimmerman, Orsolya V Moy, Hirra Zahir Fissler, Jun Wen, Nikki L B Freeman, Sean O'Brien, Heather Marti, Dane Cook, Philip Low, Dong-Yun Kim, Yves Rosenberg, Christopher B Granger, Cyndya A Shibao | American Heart Journal | 2026-02-18 | Abstract | |
| gen. nov., sp. nov., a novel halotolerant and thermotolerant bacterium isolated from Lake Warden, and proposal of fam. nov. in the order . | Luke A Fisher, Saloni R Dangre, Jordan M McKaig, Paul A Lawson, Bryce G Inman, Arthur Odenheimer, Taylor A Plattner, Enrica Quartini, Christopher E Carr, Peter T Doran, Jeff S Bowman, Britney E Schmidt, Douglas H Bartlett | International Journal Of Systematic And Evolutionary Microbiology | 2026-02-18 | Abstract | |
| Impact of COVID-19 Monoclonal Antibody Therapy on Subsequent Vaccine-elicited SARS-CoV-2 Immune Responses. | Davey Smith, Isabelle R Weir, Sydney Ramirez, Camila H Coelho, Jennifer Manne-Goehler, Mariam Aziz, Constance A Benson, Xingye Wu, Randall Hyer, Preeti K Dhillon, Farhoud Faraji, Nathaniel Bloom, Amber Myers, Parham Ramezani-Rad, Paul G Lopez, Urvi M Parikh, Amy L Heaps, Arzhang Cyrus Javan, Rachel A Bender Ignacio, Jonathan Z Li, Alexander L Greninger, Eric S Daar, David Alain Wohl, Shane Crotty, Scott F Sieg, Kara W Chew | The Journal Of Infectious Diseases | 2026-02-17 | Abstract | |
| Beyond Mendel: a call to revisit the genotype-phenotype map through new experimental paradigms. | Diethard Tautz, Luisa F Pallares, Leif Andersson, Neda Barghi, Nick Barton, Rachael Bay, Yingguang Frank Chan, Angela Hancock, Tobias S Kaiser, Daniel Koenig, Zacharias Kontarakis, Miriam Liedvogel, Juliette de Meaux, Magnus Nordborg, Abraham A Palmer, Michael Purugganan, Christian Schlötterer, Karl Schmid, Didier Y R Stainier, Detlef Weigel, Jochen B W Wolf, Dieter Ebert, Greg Gibson | Genetics | 2026-02-17 | Abstract | |
| Ecological partitioning enables phage-antibiotic cooperation in a human Pseudomonas infection. | Tiffany Luong, Lukeman Kharrat, Kevin Champagne-Jorgensen, Jennifer A Melendez, David Pride, Douglas J Conrad, Dwayne R Roach | Nature Communications | 2026-02-11 | Abstract | |
| Amoxicillin and metronidazole resistance of bacteria isolated from dental implants with peri-implant diseases: a pilot cross-sectional study. | Ismael Secundino, Yosahandy Palacios-Castañon, Nailea Zambrano-Pérez, Mayemi Pamela Santiago-Martínez, María Teresa Zermeño-Loredo, Juana Elizabeth Reyes-Martínez, Victor Nizet | Access Microbiology | 2026-02-11 | Abstract | |
| Gestational diabetes, human milk oligosaccharide concentrations, and their links to infant weight gain and the gut microbiome in a United States observational cohort. | Annalee J Furst, Kelsey E Johnson, Emily M Nagel, Nikhila Yerabandi, Allyson M Kats, Tiffany T Gallagher, Cheryl A Gale, Kristin Palmsten, Stephanie Pierce, Samantha Hoffman, Katherine Jacobs, David A Fields, Elvira M Isganaitis, Lars Bode, Ellen W Demerath | The American Journal Of Clinical Nutrition | 2026-02-10 | Abstract | |
| Virus glycoprotein nanodisc platform for vaccine analytics. | Kimmo Rantalainen, Alessia Liguori, Gabriel Ozorowski, Claudia Flynn, Jon M Steichen, Olivia M Swanson, Patrick J Madden, Sabyasachi Baboo, Swastik Phulera, Anant Gharpure, Danny Lu, Oleksandr Kalyuzhniy, Patrick Skog, Sierra Terada, Monolina Shil, Jolene K Diedrich, Erik Georgeson, Ryan Tingle, Saman Eskandarzadeh, Wen-Hsin Lee, Nushin Alavi, Diana Goodwin, Michael Kubitz, Sonya Amirzehni, Sunny Himansu, Devin Sok, Jeong Hyun Lee, John R Yates, James C Paulson, Shane Crotty, Torben Schiffner, Andrew B Ward, William R Schief | Nature Communications | 2026-02-10 | Abstract | |
| Mechanism and reconstitution of circadian transcription in cyanobacteria. | Mingxu Fang, Yajie Gu, Miron Leanca, Mariusz Matyszewski, Andy LiWang, Yulia Yuzenkova, Kevin D Corbett, Susan S Golden | Nature Structural & Molecular Biology | 2026-02-10 | Abstract | |
| Community assembly modeling of the microbiome within Barrett's esophagus and esophageal adenocarcinoma. | Caitlin Guccione, Igor Sfiligoi, Antonio Gonzalez, Justin P Shaffer, Mariya Kazachkova, Yuhan Weng, Daniel McDonald, Shailja C Shah, Samuel S Minot, Thomas G Paulson, William M Grady, Ludmil B Alexandrov, Rob Knight, Kit Curtius | BMC Genomics | 2026-02-10 | Abstract | |
| Navigating the conjugated metabolome. | Shipei Xing, Abubaker Patan, Julius Agongo, Harsha Gouda, Vincent Charron-Lamoureux, Yasin El Abiead, Zhewen Hu, Haoqi Nina Zhao, Ipsita Mohanty, Jasmine Zemlin, Wilhan Donizete Gonçalves Nunes, Lindsey A Burnett, Mingxun Wang, Dionicio Siegel, Pieter C Dorrestein | BioRxiv : The Preprint Server For Biology | 2026-02-09 | Abstract | |
| Prospective association between the gut microbiome and incident hypertension: a 20-year cohort study. | Li-Fang Yeo, Joonatan Palmu, Aki S Havulinna, Katariina Pärnänen, Veikko Salomaa, Leo Lahti, Rob Knight, Teemu Niiranen | Journal Of Hypertension | 2026-02-09 | Abstract | |
| MS/MS Mass Spectrometry Filtering Tree for Bile Acid Regio- and Stereoisomer Annotation. | Ipsita Mohanty, Shipei Xing, Vanessa Castillo, Julius Agongo, Abubaker Patan, Yasin El Abiead, Helena Mannochio-Russo, Wilhan D Gonçalves Nunes, Jasmine Zemlin, Itzhak Mizrahi, Dionicio Siegel, Mingxun Wang, Lee R Hagey, Pieter C Dorrestein | Analytical Chemistry | 2026-02-05 | Abstract | |
| Macrophage-derived cathepsin B disrupts intestinal tight junctions through occludin degradation and promotes alcohol-associated liver disease. | Marcos F Fondevila, Henriette Kreimeyer, Cynthia L Hsu, Joaquin Tamargo-Azpilicueta, Le Z Day, Marina Gritsenko, Kwame Attah, Noemí Cabré, Aenne Harberts, Fernanda Raya Tonetti, Yongqiang Yang, Tomoo Yamazaki, David Schöler, Alvaro Eguileor, Colleen Blasio, Abraham S Meijnikman, Xinlian Zhang, Ricard Garcia-Carbonell, Vivian Hook, Enchen Zhou, Zhaoli Sun, Jon M Jacobs, Jerrold R Turner, Cristina Llorente, , Christopher K Glass, Peter Stärkel, Thomas Reinheckel, Irene Diaz-Moreno, David J Gonzalez, Bernd Schnabl | Journal Of Hepatology | 2026-02-05 | Abstract | |
| Household environmental characteristics influence the house dust metagenome. | Isabella Gamez, Farnaz Fouladi, Antonio Gonzalez, James Ward, Ziyue Wang, Laura E Beane Freeman, Alison Motsinger-Reif, Shyamal D Peddada, Rob Knight, Mikyeong Lee, Stephanie J London | Environmental Research | 2026-02-05 | Abstract | |
| Characterization of broad-host-range bacteriophages targeting multidrug-resistant E. coli and Shigella spp.: in vitro potential. | Nicola Mangieri, Thaidra Gaufin, Pooja Ghatbale, David T Pride, Claudia Picozzi | BMC Microbiology | 2026-02-05 | Abstract | |
| Intersections between proteostasis and immunity: insights from Caenorhabditis elegans. | Emily R Troemel, Patricija van Oosten-Hawle, Michalis Barkoulas | Disease Models & Mechanisms | 2026-02-04 | Abstract | |
| Ketogenic diet alleviates septic lung injury via microbial gut-lung axis. | Mingyuan Wei, Xinzhu Yi, Zhuandi Lin, Jingjing Cai, Shanze Chen, Fang Zhou, Hanqin Cai, Xinfeng Lu, Juan Tang, Yunfeng Shi, Liping Cui, Lei Yang, Xinru Jing, Yunong Zeng, Rong Wu, Tingting Shu, Yuanyuan Li, Fangyuan Yang, Yi He, Zhibin Zhao, Yuqiong Yang, Wenjiao Zhu, Qiong Jiang, Weiwei Zhang, Xiang Tan, Zhuo Ma, Xiaoying Fan, Wei Ma, Sheng Li, Wensheng Shu, Hong Wei, Zhiming Xiang, Jack A Gilbert, Shenhai Gong, Zhang Wang | Cell Metabolism | 2026-02-04 | Abstract | |
| Activated ATF6α is a hepatic tumour driver restricting immunosurveillance. | Xin Li, Cynthia Lebeaupin, Aikaterini Kadianaki, Clementine Druelle-Cedano, Niklas Vesper, Charlotte Rennert, Júlia Huguet-Pradell, Borja Gomez Ramos, Chaofan Fan, Robert Stefan Piecyk, Laimdota Zizmare, Pierluigi Ramadori, Luqing Li, Lukas Frick, Menjie Qiu, Cangang Zhang, Luiza Martins Nascentes Melo, Vikas Prakash Ranvir, Peng Shen, Johannes Hanselmann, Jan Kosla, Mirian Fernández-Vaquero, Mihael Vucur, Praveen Baskaran, Xuanwen Bao, Olivia I Coleman, Yingyue Tang, Miray Cetin, Zhouji Chen, Insook Jang, Stefania Del Prete, Mohammad Rahbari, Peng Zhang, Timothy V Pham, Yushan Hou, Aihua Sun, Li Gu, Laura C Kim, Ulrike Rothermel, Danijela Heide, Adnan Ali, Suchira Gallage, Nana Talvard-Balland, Marta Piqué-Gili, Albert Gris-Oliver, Alessio Bevilacqua, Lisa Schlicker, Alec Duffey, Kristian Unger, Marta Szydlowska, Jenny Hetzer, Duncan T Odom, Tim Machauer, Daniele Bucci, Pooja Sant, Jun-Hoe Lee, Jonas Rösler, Sven W Meckelmann, Johannes Schreck, Sue Murray, M Celeste Simon, Sven Nahnsen, Almut Schulze, Ping-Chih Ho, Manfred Jugold, Kai Breuhahn, Jan-Philipp Mallm, Peter Schirmacher, Susanne Roth, Nuh Rahbari, Darjus F Tschaharganeh, Stephanie Roessler, Benjamin Goeppert, Bertram Bengsch, Geoffroy Andrieux, Melanie Boerries, Nisar P Malek, Marco Prinz, Achim Weber, Robert Zeiser, Pablo Tamayo, Peter Bronsert, Konrad Kurowski, Robert Thimme, Detian Yuan, Rafael Carretero, Tom Luedde, Roser Pinyol, Felix J Hartmann, Michael Karin, Alpaslan Tasdogan, Christoph Trautwein, Moritz Mall, Maike Hofmann, Josep M Llovet, Dirk Haller, Randal J Kaufman, Mathias Heikenwälder | Nature | 2026-02-04 | Abstract | |
| Viral shedding and symptom severity across populations during acute COVID in the ACTIV-2 study. | Evelyn Kung, Rinki Deo, Manish C Choudhary, Kara W Chew, Teresa H Evering, Rachel Bender Ignacio, Prasanna Jagannathan, James P Flynn, James Regan, Carlee Moser, Mark J Giganti, Michael D Hughes, Justin Ritz, Arzhang Cyrus Javan, Alexander L Greninger, Upinder Singh, William Fischer, Eric S Daar, David A Wohl, Joseph J Eron, Judith S Currier, Robert W Coombs, Davey M Smith, Jonathan Z Li | MedRxiv : The Preprint Server For Health Sciences | 2026-02-03 | Abstract | |
| A conjugal gene drive-like system efficiently suppresses antibiotic resistance in a bacterial population. | Saluja Kaduwal, Elizabeth C Stuart, Ankush Auradkar, Seth Washabaugh, Justin R Meyer, Ethan Bier | Npj Antimicrobials And Resistance | 2026-02-02 | Abstract | |
| Human Milk and Infant Gut Microbiome in Association With Infant Fecal Metabolome and Child Blood Pressure. | Tiange Liu, Charisse Petersen, Ni Zhao, Theo J Moraes, Padmaja Subbarao, Elinor Simons, Meghan B Azad, Kozeta Miliku, Lars Bode, Brianna Moore, Stuart Turvey, Noel T Mueller | JAMA Network Open | 2026-02-02 | Abstract | |
| Microbiome research in practice: priorities for clinical translation and impact. | Anastasia A Theodosiou, Debby Bogaert, David W Cleary, Paul-Enguerrand Fady, Conor Feehily, Jack A Gilbert, Beth Greenhough, Luca Guardabassi, Lindsay J Hall, Toni Harman, Ed J Kuijper, Sarah Lebeer, Jamie Lorimer, Tim D Spector, Chrissie E Jones | Clinical Microbiology And Infection : The Official Publication Of The European Society Of Clinical Microbiology And Infectious Diseases | 2026-02-02 | Abstract | |
| Induced pluripotent stem cell-derived platelets kill multidrug-resistant via Toll-like receptor 2-MyD88 signaling and immunoglobulin G/FcγRIIA engagement. | Qirui Lin, Kimiko Nonomura, Ieva Stirblyte, Sou Nakamura, Satoshi Uchiyama, Masaya Yamaguchi, Shigetada Kawabata, Miki Nagao, Katsue Suzuki-Inoue, Victor Nizet, Koji Eto, Naoshi Sugimoto | Research And Practice In Thrombosis And Haemostasis | 2026-02-02 | Abstract | |
| The Earth BioGenome Project Phase II: illuminating the eukaryotic tree of life. | Mark Blaxter, Harris A Lewin, Federica DiPalma, Richard Challis, Manuela da Silva, Richard Durbin, Giulio Formenti, Nico Franz, Roderic Guigo, Peter W Harrison, Michael Hiller, Katharina J Hoff, Kerstin Howe, Erich D Jarvis, Mara K N Lawniczak, Kerstin Lindblad-Toh, Debra J H Mathews, Fergal J Martin, Camila J Mazzoni, Ann M McCartney, Nicola Mulder, Sadye Paez, Kim D Pruitt, Verena Ras, Oliver A Ryder, Lesley Shirley, Franç Oise Thibaud-Nissen, Tandy Warnow, Robert M Waterhouse, | Frontiers In Science | 2026-02-02 | Abstract | |
| Polypore mushroom mycelia as an adjunct to COVID-19 vaccination: a randomized clinical trial. | Gordon Saxe, Christine N Smith, Shahrokh Golshan, Tatyana Shekhtman, Zolton J Bair, Chase Beathard, Renee A Davis, Lauray MacElhern, Andrew Shubov, Daniel Slater, Lan K Kao, Phoebe Senowitz, Stephen Wilson | BMC Immunology | 2026-01-31 | Abstract | |
| Retrieval-Augmented Language Models Enable Scalable Chemical Source Classification in Metabolomics Workflows. | Prajit Rajkumar, Runbang Tang, Harshada Sapre, Jasmine Zemlin, Victoria Deleray, Jeong In Seo, Siddharth Mohan, Shipei Xing, Harsha Gouda, Yasin El Abiead, Shirley M Tsunoda, Haoqi Nina Zhao, Pieter C Dorrestein | Analytical Chemistry | 2026-01-29 | Abstract | |
| Rational engineering of combinatorial bacterial therapies for cancer. | Paige Steppe, Katherine O'Connor, Jeff Hasty | Genome Biology | 2026-01-28 | Abstract | |
| Community Curation of Microbial Metabolites Enables Biological Insights of Metabolomics Data. | Helena Mannochio-Russo, Wilhan D Gonçalves Nunes, Shipei Xing, Fernanda de Oliveira, Andrés Mauricio Caraballo-Rodríguez, Paulo Wender Portal Gomes, Vincent Charron-Lamoureux, Julius Agongo, Nicole E Avalon, Tammy Bui, Lucia Cancelada, Marc G Chevrette, Andrés Cumsille, Moysés B de Araújo, Marilyn De Graeve, Victoria Deleray, Mohamed S Donia, Mutsawashe B Dzveta, Yasin El Abiead, Ronald J Ellis, Donald Franklin, Neha Garg, Harsha Gouda, Claude Y Hamany Djande, Anastasia Hiskia, Benjamin N Ho, Chambers C Hughes, Sunghoon Hwang, Sofia Iliakopoulou, Jennifer E Iudicello, Alan K Jarmusch, Triantafyllos Kaloudis, Irina Koester, Robert Konkel, Hector H F Koolen, Kine Eide Kvitne, Sabina Leanti La Rosa, Anny Lam, Santosh Lamichhane, Motseoa Lephatsi, Scott Letendre, Sarolt Magyari, Hanna Mazur-Marzec, Daniel McDonald, Ipsita Mohanty, Mónica Monge-Loría, David J Moore, Thiago André Moura Veiga, Musiwalo S Mulaudzi, Lerato Nephali, Griffith Nguyen, Martin Orságh, Abubaker Patan, Tomáš Pluskal, Phillip B Pope, Lívia Soman de Medeiros, Paolo Stincone, Andrej Tekel, Sydney Thomas, Ralph R Torres, Shirley M Tsunoda, Fidele Tugizimana, Martijn van Faassen, Felipe Vasquez-Castro, Giovanni A Vitale, Berenike C Wagner, Crystal X Wang, Sevasti-Kiriaki Zervou, Haoqi Nina Zhao, Simone Zuffa, Daniel Petras, Laura-Isobel McCall, Rob Knight, Mingxun Wang, Pieter C Dorrestein | BioRxiv : The Preprint Server For Biology | 2026-01-26 | Abstract | |
| mspms: an R package and GUI for multiplex substrate profiling by mass spectrometry. | Charlie Bayne, Brianna Hurysz, David J Gonzalez, Anthony O'Donoghue | BMC Bioinformatics | 2026-01-24 | Abstract | |
| An Explicit Test of Kill the Winner: Protistan Grazing and Phage Lysis Differentially Impact Fast-Growing Bacterial Taxa in the Coastal Antarctic. | Elizabeth Connors, Abigail Coker, Grace S Wang, Lisa Zeigler, Jeff S Bowman | Environmental Microbiology | 2026-01-24 | Abstract | |
| Heterologous betacoronavirus spike immunization in nonhuman primates elicits cross-reactive antibodies that neutralize both sarbeco- and merbecoviruses. | Katharina Dueker, Tazio Capozzola, Ziqi Feng, Ryan N Lin, Jonathan Hurtado, Sandhya Bangaru, Meng Yuan, Nathan Beutler, Elijah Garcia, Wan-Ting He, Sean Callaghan, Gabriel Avillion, Lina Vo, Xuduo Li, Jonathan L Torres, Rami Musharrafieh, Ge Song, Nitesh Mishra, Pragati Sharma, Peter Yong, Fabio Anzanello, Kasia Kaczmarek-Michaels, Elana Ben-Akiva, Murillo Silva, Mariane Melo, Muzamil Makhdoomi, Ethan Westfall-Gomez, William Rinaldi, Melissa Ferguson, Yana Safonova, Shane Crotty, Darrell J Irvine, Thomas Rogers, Andrew B Ward, Bryan Briney, Ian A Wilson, Dennis R Burton, Raiees Andrabi | BioRxiv : The Preprint Server For Biology | 2026-01-23 | Abstract | |
| Milk as a Transmission Vehicle for Highly Pathogenic Avian Influenza A (H5N1). | Carrie L Byington, Lisa Stellwagen, Lars Bode, Mitra Hooshmand, Donald P Pizzo, Hana Russo, Steven L Gonias | Pediatrics | 2026-01-22 | Abstract | |
| Computational pipeline reveals nature's untapped reservoir of halogenating enzymes. | Judit Szenei, Ashleigh Burke, Anne Liong, Aleksandra Korenskaia, April L Lukowski, Nadine Ziemert, Pablo I Nikel, Pedro N Leão, Bradley S Moore, Tilmann Weber, Kai Blin | BioRxiv : The Preprint Server For Biology | 2026-01-22 | Abstract | |
| Environmental Fungi Modulate the Vaginal Mycobiome and Cervical Disease Progression in Hispanic Women. | Filipa Godoy-Vitorino, Daniela Vargas-Robles, Benjamin Bolaños-Rosero, Natalia Pagán-Zayas, Andrea Cortés-Nazario, Kara Wiggin, Sarah Allard, Josefina Romaguera, Jack A Gilbert | BioRxiv : The Preprint Server For Biology | 2026-01-21 | Abstract | |
| Deconvolving Phylogenetic Distance Mixtures. | Shayesteh Arasti, Ali Osman Berk Şapcı, Eleonora Rachtman, Mohammed El-Kebir, Siavash Mirarab | BioRxiv : The Preprint Server For Biology | 2026-01-21 | Abstract | |
| Successful Bacteriophage Treatment of a Recalcitrant Intra-Abdominal Infection Caused by Multi-Drug-Resistant Pseudomonas aeruginosa in a 2-year-old Child. | Sanchi Malhotra, Keiko C Salazar, Neema Pithia, Ishminder Kaur, Kristina Adachi, Nanda Ramachandar, Austin L Terwilliger, Anthony Maresso, Robert S Venick, Suzanne V McDiarmid, John S Bradley | The Journal Of Pediatrics | 2026-01-19 | Abstract | |
| Siderophore-Pt(IV) Conjugates as Tools to Probe Cytoplasmic Cargo Delivery to Gram-Negative Bacteria. | Rachel N Motz, Gregory T Walker, Grant J Norton, Manuela Raffatellu, Elizabeth M Nolan | Journal Of The American Chemical Society | 2026-01-19 | Abstract | |
| Quantitative Food Compounds Enable Dietary Ontology Referencing across 500 Foods and Human Plasma. | Julius Agongo, Harsha Gouda, Aubreyana McMaugh, Celeste Allaband, Seyedeh Mehrnaz Aghili, Marta Sala-Climent, Shipei Xing, Jennifer Cao, Jasmine Zemlin, Mingxun Wang, Kathleen Dorrestein, Tiffany Holt, Rob Knight, Brigid S Boland, Monica Guma, Pieter C Dorrestein | Analytical Chemistry | 2026-01-18 | Abstract | |
| Eight-year prevalence and incidence of obesity, high blood glucose and high blood pressure in five African-origin populations: data from the Modeling the Epidemiologic Transition Study. | Larske M Soepnel, Catharina Conradie, Hayli Geffen, Candice Choo-Kang, Pascal Bovet, Bharathi Viswanathan, Kweku Bedu-Addo, Prince Oti-Boateng, Oscar Akunor Dei, Kingsley Apusiga, Terrence E Forrester, Estelle V Lambert, Dale Rae, Nandipha Sinyanya, Julia Goedecke, Jack A Gilbert, Brian T Layden, Amy Luke, Lara R Dugas | BMJ Public Health | 2026-01-16 | Abstract | |
| Bridging specialties: repurposing platelet drugs prescribed by cardiologists to help infectious disease doctors treat bacteremia. | Matthew Geriak, Dani Geriak, Victor Nizet, George Sakoulas | Platelets | 2026-01-16 | Abstract | |
| Human Dorsal Root Ganglia Neuronal Cell Line to Study Nociceptive Signaling: A New Pipeline for Pain Therapy. | Sara A Dochnal, Yixing Du, Daniella Bandari, Kaue Franco Malange, Jack Bryant, Julia Borges Paes Lemes, Abby Whitford, Anna R Cliffe, Prashant Mali, Kim Dore, Yury I Miller, Tony L Yaksh | FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology | 2026-01-15 | Abstract | |
| Limited evidence of benefits from clinical trials of human-identical milk oligosaccharides for infants. | Rupak Shivakoti, Barbara Laughton, Jenna Mandell, Ana Barrios-Tascon, Reshma Rajendran, Richard Glashoff, Lars Bode, Grace Aldrovandi, Louise Kuhn | Advances In Nutrition (Bethesda, Md.) | 2026-01-14 | Abstract | |
| Monounsaturated fatty acid biosynthesis is critical for streptococcal envelope homeostasis and stress tolerance. | Jonathon L Baker, Jonah Tang, Mingzhe Guo, Felipe Fabrício Farias-da-Silva, Matthew Barbisan, Molly Burnside, Kaitlin Crofton, Samantha Williams, Saarin Rao, Michelle Lee, Sadie G Drucker, Dustin Higashi, Justin Merritt, Yujiro Hirose, Jan-Willem Veening, Victor Nizet | BioRxiv : The Preprint Server For Biology | 2026-01-14 | Abstract | |
| Staphylococcus aureus in Atopic Dermatitis: How a common bacterium exploits and drives disease. | Carla Chehadeh, Teruaki Nakatsuji, Richard L Gallo | The Journal Of Allergy And Clinical Immunology | 2026-01-13 | Abstract | |
| Integrated multi-omics analysis identifies microbial and metabolic signatures and drivers of CNS autoimmunity. | Theresa L Montgomery, Emily A Nelson, Lauren A Downs, Eamonn R Heney, Margaret Frances J Lee, Cameron Martino, Daniel McDonald, Gibraan Rahman, Rob Knight, Dimitry N Krementsov | BioRxiv : The Preprint Server For Biology | 2026-01-09 | Abstract | |
| Acoustic separation and isolation of viruses, small extracellular vesicles and other nanoscale bioparticles. | Jianping Xia, Brandon Lu, Shujie Yang, Arindam Ghosh, Chaoran Chang, Abbas Hakim, John D H Mai, Ying Chen, David T W Wong, John P Nolan, Louise C Laurent, Ming Dao, Yoel Sadovsky, Luke P Lee, Subra Suresh, Tony Jun Huang | Nature Protocols | 2026-01-09 | Abstract | |
| Evaluation of a novel PCR-based assay for the detection of colonization. | Jesse Leonard, Alicia Amamoto, Monica Bates, Anh T Tran, Pooja Ghatbale, Ahnika Kline, David T Pride | Microbiology Spectrum | 2026-01-09 | Abstract | |
| Revealing the Impact of pH on Lipase Structure and Surface Propensity at the Air-Water Interface and in Aqueous Aerosols. | Tarun Kumar Roy, Patiemma Rubio, Jenille Cruz, Nicholas A Wauer, Eshani Hettiarachchi, Rommie E Amaro, Vicki H Grassian | The Journal Of Physical Chemistry Letters | 2026-01-08 | Abstract | |
| Gut microbial ethanol metabolism contributes to auto-brewery syndrome in an observational cohort. | Cynthia L Hsu, Shikha Shukla, Linton Freund, Annie C Chou, Yongqiang Yang, Ryan Bruellman, Fernanda Raya Tonetti, Noemí Cabré, Susan Mayo, Hyun Gyu Lim, Valeria Magallan, Barbara J Cordell, Sonja Lang, Münevver Demir, Peter Stärkel, Cristina Llorente, Bernhard O Palsson, Chitra Mandyam, Brigid S Boland, Elizabeth Hohmann, Bernd Schnabl | Nature Microbiology | 2026-01-08 | Abstract | |
| Synthesis-driven reverse metabolomics reveals 3-hydroxy N-acyl amides as gut microbial molecules. | Victoria Deleray, Vincent Charron-Lamoureux, Kyle Vittali, Helena Mannochio-Russo, Crystal X Wang, Corinn Walker, Karsten Zengler, Dionicio Siegel, Pieter C Dorrestein | BioRxiv : The Preprint Server For Biology | 2026-01-08 | Abstract | |
| Approaches for accelerating microbial gene function discovery using artificial intelligence. | Bernhard O Palsson, Sang Yup Lee, Gi Bae Kim | Nature Microbiology | 2026-01-07 | Abstract | |
| Population-level genomic analysis of immunoglobulin loci variation in rhesus macaques reveals extensive germline diversity. | Ayelet Peres, Amit A Upadhyay, Vered Klein, Swati Saha, Oscar L Rodriguez, Zachary M Vanwinkle, Kirti Karunakaran, Amanda Metz, William Lauer, Mark C Lin, Timothy Melton, Lukas Granholm, Pazit Polak, Samuel M Peterson, Eric J Peterson, Nagarajan Raju, Kaitlyn Shields, Steven Schultze, Thang Ton, Adam J Ericsen, Stacey A Lapp, Francois Villinger, Mats Ohlin, Christopher A Cottrell, Rama R Amara, Cynthia A Derdeyn, Shane Crotty, William R Schief, Gunilla B Karlsson Hedestam, Melissa L Smith, William Lees, Corey T Watson, Gur Yaari, Steven E Bosinger | Immunity | 2026-01-05 | Abstract | |
| Social Determinants of Health and Pediatric Long COVID in the US. | Kyung E Rhee, Tanayott Thaweethai, Deepti B Pant, Cheryl R Stein, Amy L Salisbury, Patricia A Kinser, Lawrence C Kleinman, Richard Gallagher, David Warburton, Sindhu Mohandas, Jessica N Snowden, Melissa S Stockwell, Kelan G Tantisira, Valerie J Flaherman, Ronald J Teufel, Leah Castro, Alicia Chung, Jocelyn Espinoza Esparza, Christine W Hockett, Maria Isidoro-Chino, Anita Krishnan, Lacey A McCormack, Aleisha M Nabower, Erica R Nahin, Johana M Rosas, Sarwat Siddiqui, Jacqueline R Szmuszkovicz, Nita Vangeepuram, Emily Zimmerman, Heather-Elizabeth Brown, Megan Carmilani, K Coombs, Liza Fisher, Margot Gage Witvliet, John C Wood, Joshua D Milner, Erika B Rosenzweig, Katherine Irby, Elizabeth W Karlson, Zihan Qian, Michelle F Lamendola-Essel, Denise C Hasson, Stuart D Katz, H Shonna Yin, Andrea S Foulkes, Rachel S Gross, , Judy L Aschner, Andrew M Atz, Dithi Banerjee, Amanda Bogie, Hulya Bukulmez, Katharine Clouser, Lesley A Cottrell, Kelly Cowan, Viren A D'Sa, Allen J Dozor, Amy J Elliott, E Vince S Faustino, Alexander G Fiks, Sunanda Gaur, Maria L Gennaro, Stewart T Gordon, Uzma N Hasan, Christina M Hester, Alexander H Hogan, Daniel S Hsia, David C Kaelber, Jessica S Kosut, Sankaran Krishnan, Russell J McCulloh, Ian C Michelow, Sheila M Nolan, Carlos R Oliveira, Wilson D Pace, Paul Palumbo, Hengameh Raissy, Andy Reyes, Judith L Ross, Juan C Salazar, Rangaraj Selvarangan, Michelle D Stevenson, Alan Werzberger, John M Westfall, Kathleen Zani, William T Zempsky, James Chan, Torri D Metz, Jane W Newburger, Dongngan T Truong, Candace H Feldman, Robin Aupperle, Fiona C Baker, Marie T Banich, Deanna M Barch, Arielle Baskin-Sommers, James M Bjork, Mirella Dapretto, Sandra A Brown, B J Casey, Linda Chang, Duncan B Clark, Anders M Dale, Thomas M Ernst, Damien A Fair, Sarah W Feldstein Ewing, John J Foxe, Edward G Freedman, Naomi P Friedman, Hugh Garavan, Dylan G Gee, Raul Gonzalez, Kevin M Gray, Mary M Heitzeg, Megan M Herting, Joanna Jacobus, Angela R Laird, Christine L Larson, Krista M Lisdahl, Monica Luciana, Beatriz Luna, Pamela A F Madden, Erin C McGlade, Eva M Müller-Oehring, Bonnie J Nagel, Michael C Neale, Martin P Paulus, Alexandra S Potter, Perry F Renshaw, Elizabeth R Sowell, Lindsay M Squeglia, Lucina Q Uddin, Sylia Wilson, Deborah A Yurgelun-Todd | JAMA Pediatrics | 2026-01-05 | Abstract | |
| Using multi-trait polygenic scores to predict lithium responsiveness in patients with bipolar disorder. | Nigussie T Sharew, Scott R Clark, Simon Hartmann, Sergi Papiol, Urs Heilbronner, Franziska Degenhardt, Janice M Fullerton, Liping Hou, Tatyana Shekhtman, Mazda Adli, Nirmala Akula, Kazufumi Akiyama, Raffaella Ardau, Bárbara Arias, Fasil Tekola-Ayele, Carla Gallo, Roland Hasler, Hélène Richard-Lepouriel, Nader Perroud, Lena Backlund, Abesh Kumar Bhattacharjee, Frank Bellivier, Antonio Benabarre, Susanne Bengesser, Joanna M Biernacka, Armin Birner, Cynthia Marie-Claire, Pablo Cervantes, Hsi-Chung Chen, Caterina Chillotti, Sven Cichon, Cristiana Cruceanu, Piotr M Czerski, Nina Dalkner, Maria Del Zompo, J Raymond DePaulo, Bruno Étain, Stephane Jamain, Peter Falkai, Andreas J Forstner, Louise Frisen, Mark A Frye, Sébastien Gard, Julie S Garnham, Fernando S Goes, Maria Grigoroiu-Serbanescu, Andreas J Fallgatter, Sophia Stegmaier, Thomas Ethofer, Silvia Biere, Kristiyana Petrova, Ceylan Schuster, Kristina Adorjan, Monika Budde, Maria Heilbronner, Janos L Kalman, Mojtaba Oraki Kohshour, Daniela Reich-Erkelenz, Sabrina K Schaupp, Eva C Schulte, Fanny Senner, Thomas Vogl, Ion-George Anghelescu, Volker Arolt, Udo Dannlowski, Detlef E Dietrich, Christian Figge, Markus Jäger, Fabian U Lang, Georg Juckel, Carsten Konrad, Jens Reimer, Max Schmauß, Andrea Schmitt, Carsten Spitzer, Martin von Hagen, Jens Wiltfang, Jörg Zimmermann, Till F M Andlauer, Andre Fischer, Felix Bermpohl, Philipp Ritter, Silke Matura, Anna Gryaznova, Irina Falkenberg, Cüneyt Yildiz, Tilo Kircher, Julia Schmidt, Marius Koch, Kathrin Gade, Sarah Trost, Ida S Haussleiter, Martin Lambert, Anja C Rohenkohl, Vivien Kraft, Paul Grof, Ryota Hashimoto, Joanna Hauser, Stefan Herms, Per Hoffmann, Esther Jiménez, Jean-Pierre Kahn, Layla Kassem, Po-Hsiu Kuo, Tadafumi Kato, John Kelsoe, Sarah Kittel-Schneider, Ewa Ferensztajn-Rochowiak, Barbara König, Ichiro Kusumi, Gonzalo Laje, Mikael Landén, Catharina Lavebratt, Marion Leboyer, Susan G Leckband, Alfonso Tortorella, Mirko Manchia, Lina Martinsson, Michael J McCarthy, Susan L McElroy, Francesc Colom, Vincent Millischer, Marina Mitjans, Francis M Mondimore, Palmiero Monteleone, Caroline M Nievergelt, Markus M Nöthen, Tomas Novák, Claire O'Donovan, Norio Ozaki, Andrea Pfennig, Claudia Pisanu, James B Potash, Andreas Reif, Eva Reininghaus, Guy A Rouleau, Janusz K Rybakowski, Martin Schalling, Peter R Schofield, Barbara W Schweizer, Giovanni Severino, Paul D Shilling, Katzutaka Shimoda, Christian Simhandl, Claire M Slaney, Alessio Squassina, Thomas Stamm, Pavla Stopkova, Mario Maj, Gustavo Turecki, Eduard Vieta, Julia Veeh, Biju Viswanath, Stephanie H Witt, Adam Wright, Peter P Zandi, Philip B Mitchell, Michael Bauer, Martin Alda, Marcella Rietschel, Francis J McMahon, Thomas G Schulze, Bernhard T Baune, Klaus Oliver Schubert, Azmeraw T Amare | MedRxiv : The Preprint Server For Health Sciences | 2026-01-05 | Abstract | |
| Escherichia coli expressing the kpsM gene exacerbates drug-induced liver injury through up-regulating α1,2-fucosyltransferase and disturbing the host taurine metabolism-from animal models and clinical studies. | Wenkang Gao, Shengqi Yan, Li Zhang, Liuying Chen, Jiake Che, Weiyan Huang, Yue Chen, Ao Liu, Yuanqing Zhu, Ye Yang, Zhong Peng, Chen Tan, Bernd Schnabl, Xiaohua Hou, Ling Yang, Huikuan Chu | Journal Of Advanced Research | 2026-01-03 | Abstract | |
| Metabolomic profiling reveals the potential of fatty acids as regulators of exhausted CD8 T cells during chronic viral infection. | Katelynn R Kazane, Lara Labarta-Bajo, Dina R Zangwill, Kalle Liimatta, Fernando Vargas, Kelly C Weldon, Pieter C Dorrestein, Elina I Zúñiga | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2026-01-02 | Abstract | |
| Bile salt hydrolase activity as a rational target for MASLD therapy. | Elizabeth V Jones, Yongtao Wang, Wenchao Wei, James C Reed, Snehal N Chaudhari, Darrick K Li, Jerome Boursier, Sonja Lang, Münevver Demir, Anna Mae Diehl, Andrew S Allegretti, Bernd Schnabl, Raymond T Chung, A Sloan Devlin | Gut Microbes | 2026-01-02 | Abstract | |
| Fecal microbial and metabolic signatures in children with very early onset inflammatory bowel disease. | Kine Eide Kvitne, Simone Zuffa, Vincent Charron-Lamoureux, Ipsita Mohanty, Abubaker Patan, Helena Mannochio-Russo, Jasmine Zemlin, Lindsey A Burnett, Lisa S Zhang, Mia C Cecala, Ceylan Ersoz, James A Connelly, Natasha Halasa, Maribeth Nicholson, Pieter C Dorrestein, Shirley M Tsunoda, Janet Markle | NPJ Biofilms And Microbiomes | 2025-12-31 | Abstract | |
| Dietary Nitrate Intake and 16S rRNA-Inferred Nitrite-Generating Capacity of the Subgingival Microbiome May Influence Glucose Metabolism: Results From the Oral Infections Glucose Intolerance and Insulin Resistance Study (ORIGINS). | Charlene E Goh, Bruno Bohn, Jeanine M Genkinger, Rebecca Molinsky, Sumith Roy, Bruce J Paster, Ching-Yuan Chen, Stephen Johnson, Melana Yuzefpolskaya, Paolo C Colombo, Michael Rosenbaum, Rob Knight, Moïse Desvarieux, Panos N Papapanou, David R Jacobs, Ryan T Demmer | Journal Of Clinical Periodontology | 2025-12-25 | Abstract | |
| Prospective association between the gut microbiota and incident pneumonia: a cohort study of 6419 individuals. | Irina Wikki, Joonatan Palmu, Anni Kauko, Aki Havulinna, Pekka Jousilahti, Leo Lahti, Rob Knight, Veikko Salomaa, Teemu Niiranen | Respiratory Research | 2025-12-22 | Abstract | |
| Principles for Rigorous Design and Application of Synthetic Microbial Communities. | Yuxiao Zhang, Minyu Jing, Lihui Lyu, Li Nie, Xihui Xu, Ru Sun, Xiyuan Xu, Siyu Chen, Shuobing He, Yumeng Zhang, Ping Huang, Weijie Luo, Jiaojiao Liang, Guifeng Gao, Kunkun Fan, Teng Yang, Liyan Zhang, Xiao Fu, Sarah M Allard, Jack A Gilbert, Jiabao Zhang, Haiyan Chu | Advanced Science (Weinheim, Baden-Wurttemberg, Germany) | 2025-12-20 | Abstract | |
| Pneumococcal S protein coordinates cell wall modification and repair to resist host antimicrobials. | Jessica Burnier, Clement Gallay, Kevin E Bruce, Elisabet Bjånes, Louise Martin, Kin Ki Jim, Ho-Ching Tiffany Tsui, Amelieke J H Cremers, Johann Mignolet, Daniela Vollmer, Jacob Biboy, Victor Nizet, Waldemar Vollmer, Malcolm E Winkler, Jan-Willem Veening | Nature Microbiology | 2025-12-19 | Abstract | |
| Accuracy of VIDAS TB-IGRA in TB patients and individuals with different thresholds of exposure. | Delia Goletti, Niaz Banaei, Rahul Batra, Anne Emmanuelle Berger, Azra Blazevic, Elisabeth Botelho-Nevers, Ronan Breen, Natalie Bruiners, Emmanuelle Cambau, Etienne Carbonnelle, Charles L Daley, Cécile Descotes-Genon, Francesco Di Gennaro, Florence Doucet-Populaire, Aliasgar Esmail, Julia Dolores Estrada Guzman, Luc Fontana, Maria Laura Gennaro, Deborah Handler, Rosa María Herrera Torres, Daniel Hoft, Nahed Ismail, Margaux Isnard, Julia Kenny, Alfred Lardizabal, François Xavier Lesage, Amanda Lopes, Williams Luciano López Vidal, Rene Machado Contreras, Philippe Manivet, Hubert Marotte, Frédéric Méchaï, Amel Medjahed-Artebasse, Richard Meldau, Yves Mérieux, Jacques Morel, Faiza Mougari, Suzette Oelofse, Fabrizio Palmieri, Jean Luc Perrot, Elisa Petruccioli, David T Pride, Edouard Tuaillon, Caryn Upton, Naadira Vanker, Keertan Dheda | International Journal Of Infectious Diseases : IJID : Official Publication Of The International Society For Infectious Diseases | 2025-12-19 | Abstract | |
| Genetic architecture and mechanisms of host-microbiome interactions from a multi-cohort analysis of outbred laboratory rats. | Hélène Tonnelé, Denghui Chen, Felipe Morillo, Jorge Garcia-Calleja, Apurva S Chitre, Benjamin B Johnson, Thiago Missfeldt Sanches, Riyan Cheng, Marc Jan Bonder, Antonio Gonzalez, Tomasz Kosciolek, Anthony M George, Wenyan Han, Katie Holl, Aidan Horvath, Keita Ishiwari, Christopher P King, Alexander C Lamparelli, Connor D Martin, Angel Garcia Martinez, Alesa H Netzley, Jordan A Tripi, Tengfei Wang, Elena Bosch, Peter A Doris, Oliver Stegle, Hao Chen, Shelly B Flagel, Paul J Meyer, Jerry B Richards, Terry E Robinson, Leah C Solberg Woods, Oksana Polesskaya, Rob Knight, Abraham A Palmer, Amelie Baud | Nature Communications | 2025-12-18 | Abstract | |
| Extended-Spectrum β-Lactamase-Producing and Pediatric UTIs: A Review of the Literature and Selected Experimental Observations. | Vanessa Tamas, Erlinda R Ulloa, Monika Kumaraswamy, Samira Dahesh, Raymond Zurich, Victor Nizet, Alison Coady | Antibiotics (Basel, Switzerland) | 2025-12-18 | Abstract | |
| Time-specific bidirectional links between the maternal microbiome, milk composition, and infant gut microbiota. | Lishi Deng, Kelsey Fehr, Laeticia Celine Toe, Lindsay H Allen, Lars Bode, Daniela Hampel, Melissa B Manus, Andrew Mertens, Bianca Robertson, Chloe Yonemitsu, Bruno De Meulenaer, Carl Lachat, Justin L Sonnenburg, Meghan B Azad, Trenton Dailey-Chwalibóg | Cell Host & Microbe | 2025-12-17 | Abstract | |
| An integrated view of the structure and function of the human 4D nucleome. | Job Dekker, Betul Akgol Oksuz, Yang Zhang, Ye Wang, Miriam K Minsk, Shuzhen Kuang, Liyan Yang, Johan H Gibcus, Nils Krietenstein, Oliver J Rando, Jie Xu, Derek H Janssens, Steven Henikoff, Alexander Kukalev, Willemin Andréa, Warren Winick-Ng, Rieke Kempfer, Ana Pombo, Miao Yu, Pradeep Kumar, Liguo Zhang, Andrew S Belmont, Takayo Sasaki, Tom van Schaik, Laura Brueckner, Daan Peric-Hupkes, Bas van Steensel, Ping Wang, Haoxi Chai, Minji Kim, Yijun Ruan, Ran Zhang, Sofia A Quinodoz, Prashant Bhat, Mitchell Guttman, Wenxin Zhao, Shu Chien, Yuan Liu, Sergey V Venev, Dariusz Plewczynski, Ibai Irastorza Azcarate, Dominik Szabó, Christoph J Thieme, Teresa Szczepińska, Mateusz Chiliński, Kaustav Sengupta, Mattia Conte, Andrea Esposito, Alex Abraham, Ruochi Zhang, Yuchuan Wang, Xingzhao Wen, Qiuyang Wu, Yang Yang, Jie Liu, Lorenzo Boninsegna, Asli Yildirim, Yuxiang Zhan, Andrea Maria Chiariello, Simona Bianco, Lindsay Lee, Ming Hu, Yun Li, R Jordan Barnett, Ashley L Cook, Daniel J Emerson, Claire Marchal, Peiyao Zhao, Peter J Park, Burak H Alver, Andrew J Schroeder, Rahi Navelkar, Clara Bakker, William Ronchetti, Shannon Ehmsen, Alexander D Veit, Nils Gehlenborg, Ting Wang, Daofeng Li, Xiaotao Wang, Mario Nicodemi, Bing Ren, Sheng Zhong, Jennifer E Phillips-Cremins, David M Gilbert, Katherine S Pollard, Frank Alber, Jian Ma, William S Noble, Feng Yue | Nature | 2025-12-17 | Abstract | |
| Discovery of Tetrahydroisoquinoline-Based SARS-CoV-2 Helicase Inhibitors with Iterative, Deep Learning-Enhanced Virtual Screening. | Alma C Castañeda-Leautaud, Ambuj Srivastava, Eunjung Kim, Donghoon Chung, Thomas D Bannister, Rommie E Amaro | Journal Of Chemical Information And Modeling | 2025-12-16 | Abstract | |
| Structure of the pan-genome is revealed using machine learning. | Joshua T Burrows, Gaoyuan Li, Jonathan M Monk, Siddharth M Chauhan, Bernhard O Palsson | Microbiology Spectrum | 2025-12-15 | Abstract | |
| and related gut microbiome species modulate biofilm formation through the production of bioactive small molecules. | Heidi Pauer, Saeideh Nasiri, Nathalia Santos Magalhães, Vivian T Nguyen, Nicole Victor Ferreira, Larissa D Silva Ferreira, Athena Brianne Bradshaw, Katherine E Kirby, Tyler Sabapathy, Chukwuma Great Udensi, Viktoriia Feofanova, Daniel Andrade Moreira, Thiago Estevam Parente, Jacob Wilde, David T Pride, Emma Allen-Vercoe, L Caetano M Antunes | BioRxiv : The Preprint Server For Biology | 2025-12-15 | Abstract | |
| Environmental and skin-nasal microbiome variation in South African children with atopic dermatitis. | Yang Chen, Anna Dan Nguyen, Nonhlanhla Lunjani, Gillian Ndhlovu, Drishti Kaul, Britta De Pessemier, Teruaki Nakatsuji, Murunwa Madzinga, Evgeniya Sovershaeva, Carol Hlela, Michael Levin, Avumile Mankahla, George Hightower, Chris Callewaert, Rob Knight, Richard L Gallo, Christopher L Dupont, Felix Dube | BMC Microbiology | 2025-12-12 | Abstract | |
| Engineering filamentous potato virus X as a platform nanotechnology for nucleic acid gene delivery. | Bryan Duoto, Michael Tong, Krister J Barkovich, Juliane Schuphan, Prashant Mali, Nicole F Steinmetz | Scientific Reports | 2025-12-12 | Abstract | |
| An antimicrobial daptide from human skin commensal Staphylococcus hominis protects against skin pathogens. | Amber Nguyen, Zoie L Bunch, Ingrid Y Martinez-Aldino, Manuel Rangel-Grimaldo, Uday Tak, John C Thorstenson, Morgan M Severn, Teruaki Nakatsuji, Richard L Gallo, Tyler N Graf, Nicholas H Oberlies, Jonathan R Chekan, Nadja B Cech, Alexander R Horswill | Nature Communications | 2025-12-11 | Abstract | |
| Scikit-bio: a fundamental Python library for biological omic data analysis. | Matthew Aton, Daniel McDonald, Jorge Cañardo Alastuey, Raeed Azom, Paarth Batra, Valentyn Bezshapkin, Evan Bolyen, Alexander Cagle, J Gregory Caporaso, Justine W Debelius, Kestrel Gorlick, Nirmitha Hamsanipally, Lars Hunger, Aryan Keluskar, Disen Liao, Yang Young Lu, Jose A Navas-Molina, Anders Pitman, Jai Ram Rideout, Anton Sazonov, Bharath Sathappan, Karen Schwarzberg Lipson, Igor Sfiligoi, Chris Tapo, Yoshiki Vázquez-Baeza, Zijun Wu, Zhenjiang Zech Xu, Mingsong Sam Ye, Jianshu Zhao, Rob Knight, James T Morton, Qiyun Zhu | Nature Methods | 2025-12-11 | Abstract | |
| Value of Multiomics Over Clinical Risk Factors in Hypertension Prediction. | Matti Vuori, Matti O Ruuskanen, Pekka Jousilahti, Veikko Salomaa, Li-Fang Yeo, Anni Kauko, Felix Vaura, Aki Havulinna, Yang Liu, Guillaume Méric, Michael Inouye, Rob Knight, Leo Lahti, Teemu Niiranen | Hypertension (Dallas, Tex. : 1979) | 2025-12-11 | Abstract | |
| Mycobacteria trehalose dimycolate interactions with host Mincle remodel blood-brain barrier junctions for brain invasion. | Megan I Hayes, Sumedha Ravishankar, Jonathan K Shanahan, Adam J Fountain, Lalita Ramakrishnan, Cressida A Madigan | Cell Reports | 2025-12-11 | Abstract | |
| METTL9 tests Candida's mettle by limiting metal acquisition. | Raminder Singh, Manuela Raffatellu | Cell Host & Microbe | 2025-12-11 | Abstract | |
| A resource to empirically establish drug exposure records directly from untargeted metabolomics data. | Haoqi Nina Zhao, Kine Eide Kvitne, Corinna Brungs, Siddharth Mohan, Vincent Charron-Lamoureux, Wout Bittremieux, Runbang Tang, Robin Schmid, Santosh Lamichhane, Shipei Xing, Yasin El Abiead, Mohammadsobhan S Andalibi, Helena Mannochio-Russo, Madison Ambre, Nicole E Avalon, MacKenzie Bryant, Lindsey A Burnett, Andrés Mauricio Caraballo-Rodríguez, Martin Casas Maya, Loryn Chin, Lluís Corominas, Ronald J Ellis, Donald Franklin, Sagan Girod, Paulo Wender P Gomes, Lauren Hansen, Robert K Heaton, Jennifer E Iudicello, Alan K Jarmusch, Lora Khatib, Scott Letendre, Sarolt Magyari, Daniel McDonald, Ipsita Mohanty, Andrés Cumsille, David J Moore, Prajit Rajkumar, Dylan H Ross, Harshada Sapre, Mohammad Reza Zare Shahneh, Ruben Gil-Solsona, Sydney P Thomas, Caitlin Tribelhorn, Helena M Tubb, Corinn Walker, Crystal X Wang, Jasmine Zemlin, Simone Zuffa, David S Wishart, Pablo Gago-Ferrero, Rima Kaddurah-Daouk, Mingxun Wang, Manuela Raffatellu, Karsten Zengler, Tomáš Pluskal, Libin Xu, Rob Knight, Shirley M Tsunoda, Pieter C Dorrestein | Nature Communications | 2025-12-09 | Abstract | |
| Effect of Perinatal Ampicillin or Amoxicillin/Clavulanate Exposure on Maternal and Infant Gut Microbiome, Metabolome, and Infant Responses to the 20-valent Pneumococcal Conjugate Vaccine. | Emi Suzuki, Victoria Deleray, Jasmine Zemlin, Armin Kousha, Hannah Nonoguchi, Daniel Sun, Chih-Ming Tsai, Simone Zuffa, Kine Eide Kvitne, Pieter C Dorrestein, Shirley M Tsunoda, Victor Nizet, George Y Liu, Fatemeh Askarian | BioRxiv : The Preprint Server For Biology | 2025-12-08 | Abstract | |
| Taxonomic and biosynthetic diversity of the marine actinomycete across spatial scales. | Kaitlin E Creamer, Gabriel Castro-Falcón, Ebru Ince, Victoria Vasilat, David Vereau Gorbitz, Alyssa M Demko, Paul R Jensen | Applied And Environmental Microbiology | 2025-12-08 | Abstract | |
| Rare metabolic gene essentiality is a determinant of microniche adaptation in Eschherichia coli. | Omid Ardalani, Patrick V Phaneuf, Jayanth Krishnan, Siddharth M Chauhan, David Pride, Daniel C Zielinski, Jonathan M Monk, Lars K Nielsen, Bernhard O Palsson | PLoS Pathogens | 2025-12-08 | Abstract | |
| Understanding Aerosol-Mediated Disease Transmission. | Abigail C Dommer, Rommie E Amaro, Kimberly A Prather | ACS Central Science | 2025-12-04 | Abstract | |
| Microbiome-derived bile acid signatures in early life and their association with islet autoimmunity. | Santosh Lamichhane, Alex M Dickens, Tanja Buchacher, Tianai Lou, Vincent Charron-Lamoureux, Roosa Kattelus, Pragya Karmacharya, Lucas Pinto da Silva, Matilda Kråkström, Omid Rasool, Partho Sen, Corinn Walker, Abubaker Patan, Emily C Gentry, Simone Zuffa, Aron Arzoomand, Tadepally Lakshmikanth, Jaromir Mikeš, Aman Mebrahtu, Tommi Vatanen, Manuela Raffatellu, Karsten Zengler, Tuulia Hyötyläinen, Ramnik J Xavier, Petter Brodin, Riitta Lahesmaa, Pieter C Dorrestein, Mikael Knip, Matej Orešič | Nature Communications | 2025-12-03 | Abstract | |
| Developmentally dynamic chromatin state at loci regulating organ crosstalk by remote sensing and signaling. | Aditya Parmar, Sanjay K Nigam, Kun Cai, Kian Falah, Vladimir S Ermakov, Kelly Wang, Cole J Ferguson | Epigenetics & Chromatin | 2025-12-03 | Abstract | |
| The undiscovered natural product potential of Actinomycetes. | Andrés M Caraballo-Rodríguez, Andrés Cumsille, Sarolt Magyari, Maria Taboada-Alquerque, Bahar Behsaz, Tiago F Leão, Kirk Broders, Yasin El Abiead, Jason A Clement, Vincent Charron-Lamoureux, Simone Zuffa, Louis-Félix Nothias, Mengzhou Hu, Christopher Leone, Sarvar A Kakhkhorov, Beatriz Cámara, Hosein Mohimani, Pieter C Dorrestein | The Journal Of Antibiotics | 2025-12-02 | Abstract | |
| Commensal colonization triggers Peyer's patch development. | Romana R Gerner, Gregory T Walker, Suzi M Klaus, Karine Melchior, Suzana Hossain, Kareem Siada, Chia-Yun Hsu, Francisco J Albicoro, William Santus, Rasika Patkar, Marvic Carrillo-Terrazas, Grant J Norton, Flavian Thelen, Araceli Perez-Lopez, Purnima Sharma, Marcus P Wong, Victor Lei, Richard M Ransohoff, David D Lo, Thomas E Lane, Andrea Reboldi, Sean-Paul Nuccio, Judith Behnsen, Elina I Zuniga, Li-Fan Lu, Çagla Tükel, Hiutung Chu, Manuela Raffatellu | BioRxiv : The Preprint Server For Biology | 2025-12-02 | Abstract | |
| A Perspective on Unintentional Fragments and Their Impact on the Dark Metabolome, Untargeted Profiling, Molecular Networking, Public Data, and Repository Scale Analysis. | Yasin El Abiead, Ipsita Mohanty, Shipei Xing, Adriano Rutz, Vincent Charron-Lamoureux, Tito Damiani, Wenyun Lu, Gary J Patti, Nicola Zamboni, Oscar Yanes, Pieter C Dorrestein | JACS Au | 2025-12-01 | Abstract | |
| Longitudinal changes in gut microbiota across reproductive states in wild baboons. | Chelsea A Southworth, Logan Barrios, Mauna R Dasari, Laurence R Gesquiere, Jack A Gilbert, Susan C Alberts, Jenny Tung, Elizabeth A Archie | BioRxiv : The Preprint Server For Biology | 2025-12-01 | Abstract | |
| Exploring the human small intestinal luminal microbiome via a newly developed ingestible sampling device. | Alexandre Tronel, Morgane Roger-Margueritat, Caroline Plazy, Salomé Biennier, Anthony Craspay, Ipsita Mohanty, Stéphanie Cools Portier, Manolo Laiola, Guus Roeselers, Nicolas Mathieu, Marianne Hupe, Pieter C Dorrestein, Jean-Pierre Alcaraz, Donald Martin, Philippe Cinquin, Anne-Sophie Silvent, Joris Giai, Marion Proust, Thomas Soranzo, Elena Buelow, Audrey Le Gouellec | ISME Communications | 2025-11-28 | Abstract | |
| A niche for ecology and evolution in microbial biotechnology. | Callie R Chappell, Jonathan B Shurin | Trends In Ecology & Evolution | 2025-11-27 | Abstract | |
| Environmental and maternal imprints on infant gut metabolic development. | Kine Eide Kvitne, Celeste Allaband, Jennifer C Onuora, Daniela Perry, Simone Zuffa, Lucas Patel, Vincent Charron-Lamoureux, Ipsita Mohanty, Kristija Sejane, Abubaker Patan, Abdullah Al Mahmud, Tahmeed Ahmed, Diego G Bassani, Antonio González, Davidson H Hamer, Rashidul Haque, Benjamin Ho, Md Iqbal Hossain, Mohammad Shahidul Islam, Daniel McDonald, Lisa G Pell, Huma Qamar, Daniel E Roth, Samir Saha, Prakesh S Shah, Md Muniruzzaman Siddiqui, Shafiqul Alam Sarker, Shamima Sultana, Sydney Thomas, Lindsey A Burnett, Shirley M Tsunoda, Lars Bode, Pieter C Dorrestein, Rob Knight | Cell Host & Microbe | 2025-11-26 | Abstract | |
| Evaluation of Aminoglycoside Dosing Regimens Adjusted for Renal Function and In Vitro Susceptibility Test Interpretive Criteria for Enterobacterales and . | Sujata M Bhavnani, Jeffrey P Hammel, Nikolas J Onufrak, Jason M Pogue, Ronald N Jones, Helio S Sader, George L Drusano, John S Bradley, David R Andes, William A Craig, Paul G Ambrose | Open Forum Infectious Diseases | 2025-11-26 | Abstract | |
| Evaluation of Aminoglycoside Dosing Regimens Adjusted for Renal Function and In Vitro Susceptibility Test Interpretive Criteria for Enterobacterales and : Brief Summary. | Sujata M Bhavnani, Jeffrey P Hammel, Nikolas J Onufrak, Jason M Pogue, Ronald N Jones, Helio S Sader, George L Drusano, John S Bradley, David R Andes, William A Craig, Paul G Ambrose | Open Forum Infectious Diseases | 2025-11-26 | Abstract | |
| A metabolic atlas of mouse aging. | Steven E Pilley, Dominik Awad, Djakim Latumalea, Connie New, Edgar Esparza, Shuo Wang, Xuanyi Shi, Li Zhang, Maximilian Unfried, Jasinda H Lee, Ernst Schmid, Ipsita Mohanty, Jenna L E Blum, Shivaanishaa Raventhiran, Esther Wong, Preeti R Iyengar, Racheal Mulondo, Sriraksha Bharadwaj Kashyap, Darius Moaddeli, Peter Sajjakulnukit, Damien Sutton, Harrison K A Wong, Yaqi Gao, George Wang, Aeowynn J Coakley, Gilberto Garcia, Ryo Higuchi-Sanabria, Anja Karlstaedt, Timothy L Frankel, Marina Pasca di Magliano, Whitaker Cohn, Sophia Liu, Bingfei Yu, Pieter C Dorrestein, Ernest Fraenkel, Shawn M Davidson, William B Tu, Brian K Kennedy, Costas A Lyssiotis, Peter J Mullen | Cell Metabolism | 2025-11-25 | Abstract | |
| Controlling Megasynthetase Module-Module Interactions through β-Hairpin Docking Domain Engineering. | Michael R Rankin, Kenia L Contreras, William H Gerwick, Lena Gerwick, Janet L Smith | ACS Chemical Biology | 2025-11-25 | Abstract | |
| A homolog of methionine γ-lyase is required for biofilm development in the cyanobacterium Synechococcus elongatus. | Eli Zecharia, Linor Shalev, Eleonora Sendersky, Jennifer I C Benichou, Susan S Golden, Rakefet Schwarz | World Journal Of Microbiology & Biotechnology | 2025-11-25 | Abstract | |
| Antimicrobial resistance is widespread among intestinal and extra-intestinal strains. | Marvic Carrillo Terrazas, Renee E Oles, Luke R Loomis, Chia-Yun Hsu, Adriana Vasquez Ayala, Michael H Lee, Mousumi Paulchakrabarti, David Pride, Biswa Choudhury, Victor Nizet, Manuela Raffatellu, Rob Knight, Hiutung Chu | Infection And Immunity | 2025-11-24 | Abstract | |
| Atopic Dermatitis-like mouse model using early inoculation of patient-derived together with MC903. | Aaroh Joshi, Altan Cornu, Josefa Luxner, Gernot Zarfel, Camille Braun, Jean-Francois Nicolas, Richard L Gallo, Marc Vocanson, Peter Wolf, Vijaykumar Patra | JID Innovations : Skin Science From Molecules To Population Health | 2025-11-21 | Abstract | |
| Calculating fast differential genome coverages among metagenomic sources using micov. | Yuhan Weng, Caitlin Guccione, Daniel McDonald, Renee Oles, Suzanne Devkota, Evguenia Kopylova, Gregory D Sepich-Poore, Rodolfo A Salido, M Omar Din, Se Jin Song, Kit Curtius, Hiutung Chu, Andrew Bartko, Jeff Hasty, Rob Knight | Communications Biology | 2025-11-20 | Abstract | |
| Development of the Breastfed Infant Oral Microbiome Is Associated with Concentrations and Intakes of Human Milk Oligosaccharides. | Roaa A Arishi, Ali S Cheema, Jacki L McEachran, Zoya Gridneva, Annalee Furst, Ana Roman, Lars Bode, Ching Tat Lai, Matthew S Payne, Donna T Geddes, Lisa F Stinson | Nutrients | 2025-11-20 | Abstract | |
| Safeguarding microbial biodiversity: microbial conservation specialist group within the species survival commission of the International Union for Conservation of Nature. | Jack A Gilbert, Amber Hartman Scholz, Maria Gloria Dominguez Bello, Lise Korsten, Gabriele Berg, Brajesh K Singh, Antje Boetius, Fengping Wang, Chris Greening, Kelly Wrighton, Seth R Bordenstein, Janet Jansson, Jay T Lennon, Valeria Souza, Sarah M Allard, Torsten Thomas, Don Cowan, Thomas W Crowther, Nguyen Nguyen, Lucy Harper, Louis-Patrick Haraoui, Suzanne L Ishaq, Margaret McFall-Ngai, Kent H Redford, Raquel Peixoto | MSystems | 2025-11-20 | Abstract | |
| Metabolism and gene expression models for the microbiome reveal how diet and metabolic dysbiosis impact disease. | Juan D Tibocha-Bonilla, Rodrigo Santibáñez-Palominos, Yuhan Weng, Manish Kumar, Karsten Zengler | Cell Systems | 2025-11-20 | Abstract | |
| Microbiologist in the Clinic: Pregnant Microbiologist with Asymptomatic Bacteriuria. | Linda Brubaker, Harry Horsley, Rajvinder Khasriya, Alan J Wolfe | International Urogynecology Journal | 2025-11-19 | Abstract | |
| Experimental phage evolution results in expanded host ranges against antibiotic resistant Klebsiella pneumoniae isolates. | Pooja Ghatbale, Alisha Blanc, Andrew Sue, Jesse Leonard, Monica Bates, Andrew G Garcia, Joshua Hensley, Danielle Devequi Gomes Nunes, Nicole Hitchcock, Job Shiach, Roberto Bardaró, Govind Sah, Chandrabali Ghose, Katrine L Whiteson, Robert T Schooley, Richard Allen White, Ana G Cobián Güemes, Justin R Meyer, David T Pride | Nature Communications | 2025-11-19 | Abstract | |
| Proteome profiling indicates a link between mitochondrial pathways and the host-microbial sensor ELMO1 following infection. | Sajan C Achi, Dominic McGrosso, Stefania Tocci, Isaac Amao, Baibaswata Saha, Stella-Rita Ibeawuchi, Ibrahim M Sayed, David J Gonzalez, Soumita Das | Gut Microbes | 2025-11-17 | Abstract | |
| Time-Restricted Feeding Is Not Effective in Modulating Fibrosis in a Male MASH Model. | Stephany Flores Ramos, Kelly A Fogelson, Valentina B Muti, Wuling Zhong, Jingjing Hu, Mojgan Hosseini, Rohit Loomba, Amir Zarrinpar | Journal Of Biological Rhythms | 2025-11-17 | Abstract | |
| Discovery of benzyl carbamate inhibitors of coronavirus M enzymes from a legacy collection of cysteine protease inhibitors. | Mateus Sá Magalhães Serafim, Thales Kronenberger, Karol R Francisco, Erik Vinicius de Sousa Reis, Ellen Gonçalves de Oliveira, Fernanda Kelly Marcelino E Oliveira, Isadora Serraglio Fortes, Thaís Helena Maciel Fernandes, Elany Barbosa da Silva, Pavla Fajtova, Danielle E Skinner, Rafay O Syed, Jair Lage de Siqueira-Neto, Antti Poso, Bruno Eduardo Fernandes Mota, Jordana Grazziela Alves Coelho-Dos-Reis, Jônatas Santos Abrahão, Vinícius Gonçalves Maltarollo, Anthony J O'Donoghue, Conor R Caffrey | Journal Of Enzyme Inhibition And Medicinal Chemistry | 2025-11-17 | Abstract | |
| Natural Macrophage Membrane-Coated Nanoparticles as a Multifaceted Sepsis Therapeutic to Sequester Inflammatory and Toxic Mediators. | Alexandria Hoffman, Elisabet Bjånes, Zhidong Zhou, Amirah Onanuga, Anh T P Ngo, Shawn Hannah, Natalie Chavarria, Samira Dahesh, Brooke T Tran, Angela Meier, Yiyan Yu, Lei Sun, Liangfang Zhang, Weiwei Gao, Jessica J Field, Victor Nizet | ACS Nano | 2025-11-11 | Abstract | |
| Inhibitors of the 20S proteasome β5 subunit as potent and selective agents against . | Yukiko Miyamoto, Brianna M Hurysz, Pavla Fajtova, Peter Eckmann, Mateus Sá Magalhães Serafim, Thales Kronenberger, Momen Al-Hindy, Patrick M Dekker, Elmer Maurits, Herman S Overkleeft, B Mikael Bergdahl, Jehad Almaliti, William H Gerwick, Anthony J O'Donoghue, Lars Eckmann | Antimicrobial Agents And Chemotherapy | 2025-11-11 | Abstract | |
| Highly functional and prolonged germinal center T follicular helper cell responses are associated with enhanced neutralizing antibody development. | Ester Marina-Zárate, Henry J Sutton, Paul G Lopez, Tasha K Altheide, Michael Bick, Iszac Burton, Elana Ben-Akiva, Katarzyna Kaczmarek Michaels, Kesha Hyacinth, Brandon S Healy, Deuk Lim, Lars Hangartner, Dennis R Burton, Diane G Carnathan, Guido Silvestri, William R Schief, Darrell J Irvine, Shane Crotty | Immunity | 2025-11-07 | Abstract | |
| Invasive Pneumococcal Disease at Eight Children's Hospitals in the United States, 2018-2023. | Sheldon L Kaplan, William J Barson, Philana Ling Lin, Steven Dahl, John S Bradley, Pia S Pannaraj, Tina Q Tan, Jennifer Dien Bard, Kacy Ramirez, Lindsay R Grant, Adriano Arguedas, Maria J Tort, Ashley Miller, Alejandro Cané, Kristina G Hulten | The Pediatric Infectious Disease Journal | 2025-11-07 | Abstract | |
| Detoxifying and depolymerizing microorganisms reveal intertwined guild collaborations in the gut microbiome of a generalist macro-algivorous fish. | Alvaro M Plominsky, Aaron Oliver, Carlos Henriquez-Castillo, Sheila Podell, Jeremiah J Minich, Simona Augyte, Jennica Lowell-Hawkins, Neil A Sims, Eric E Allen | BioRxiv : The Preprint Server For Biology | 2025-11-05 | Abstract | |
| A split luciferase system for studying coronavirus M dimerization in vitro and in living cells. | Renee Delgado, Jyoti Vishwakarma, Javier O Sanlley Hernandez, Megan Tansiongco, Ashley Cuell, Agnieszka Dabrowska, Rahul Basu, Philipp A M Schmidpeter, You Hu, Susan E Tsutakawa, Christina B Cooley, Rommie E Amaro, Reuben S Harris | The Journal Of Biological Chemistry | 2025-11-04 | Abstract | |
| Intestinal REG3G Protects Against Gastrointestinal Dysfunction in a Murine Model of Ethanol Intoxication and Burn Injury. | Rachel H McMahan, Kevin M Najarro, Lauren E Giesy, Mara R Evans, Bernd Schnabl, David J Orlicky, Daniel N Frank, Elizabeth J Kovacs | Shock (Augusta, Ga.) | 2025-11-04 | Abstract | |
| Epithelial Heparan Sulfate Promotes Corneal Infection by Inhibiting Cathelicidins. | Kazutaka Hayashida, Jeffrey D Esko, Richard D Gallo, Jian Liu, Winston W-Y Kao, Pyong Woo Park | Proteoglycan Research | 2025-11-03 | Abstract | |
| Growth-coupled microbial biosynthesis of the animal pigment xanthommatin. | Leah B Bushin, Tobias B Alter, María V G Alván-Vargas, Lara Dürr, Elina C Olson, Mariah J Avila, Daniel C Volke, Òscar Puiggené, Taehwan Kim, Leila F Deravi, Adam M Feist, Pablo I Nikel, Bradley S Moore | Nature Biotechnology | 2025-11-03 | Abstract | |
| Concordance of Urogenital Microbiome From Sequentially Self-collected Specimens. | Emily S Lukacz, Daniel McDonald, MacKenzie Bryant, Sara Putnam, Kyle Rudser, Caitriona Brennan, Melanie Meister, Cynthia S Fok, Margaret G Mueller, Rob Knight, Linda Brubaker, | Urogynecology (Philadelphia, Pa.) | 2025-11-01 | Abstract | |
| Preventive effect of vaccination on long COVID in adolescents with SARS-CoV-2 infection. | Tanayott Thaweethai, Rachel S Gross, Deepti B Pant, Kyung E Rhee, Terry L Jernigan, Lawrence C Kleinman, Jessica N Snowden, Amy L Salisbury, Patricia A Kinser, Joshua D Milner, Kelan Tantisira, David Warburton, Sindhu Mohandas, John C Wood, Megan L Fitzgerald, Megan Carmilani, Aparna Krishnamoorthy, Harrison T Reeder, Andrea S Foulkes, Melissa S Stockwell, | Vaccine | 2025-11-01 | Abstract | |
| The mevalonate pathway of isoprenoid biosynthesis supports metabolic flexibility in . | Christine M Qabar, Edward E K Baidoo, Emine Akyuz Turumtay, Tariq M Qayum, Jay D Keasling, Cressida A Madigan, Daniel A Portnoy, Jeffery S Cox | Journal Of Bacteriology | 2025-10-30 | Abstract | |
| Bacteria as living biosensors for DNA. | Katherine O'Connor, Paige Steppe, Daniel Worthley, Jeff Hasty, Robert Cooper | Nature Reviews Bioengineering | 2025-10-30 | Abstract | |
| Personalised whole-body modelling links gut microbiota to metabolic perturbations in Alzheimer's disease. | Tim Hensen, Lora Khatib, Lucas Patel, Daniel McDonald, Antonio González, Siamak MahmoudianDehkordi, Colette Blach, , Rob Knight, Rima Kaddurah-Daouk, Ines Thiele | BioRxiv : The Preprint Server For Biology | 2025-10-29 | Abstract | |
| HIV Reservoir Dynamics and Bacteriome Composition Along the Gut Axis. | Mattia Trunfio, Davey Smith, Noah Gaitan, Mina Awad, Magali Porrachia, Alan Wells, Jesus Rivera-Nieves, Elizabeth Hastie, Patricia Riggs, Sara Gianella, Antoine Chaillon | The Journal Of Infectious Diseases | 2025-10-29 | Abstract | |
| Safeguarding microbial biodiversity: microbial conservation specialist group within the species survival commission of the International Union for Conservation of Nature. | Jack A Gilbert, Amber Hartman Scholz, Maria Gloria Dominguez Bello, Lise Korsten, Gabriele Berg, Brajesh K Singh, Antje Boetius, Fengping Wang, Chris Greening, Kelly Wrighton, Seth R Bordenstein, Janet Jansson, Jay T Lennon, Valeria Souza, Sarah M Allard, Torsten Thomas, Don Cowan, Thomas W Crowther, Nguyen Nguyen, Lucy Harper, Louis-Patrick Haraoui, Suzanne L Ishaq, Margaret McFall-Ngai, Kent H Redford, Raquel Peixoto | The ISME Journal | 2025-10-22 | Abstract | |
| Dextrin utilization in Streptococcus pyogenes pathogenesis and growth. | Yujiro Hirose, Victor Nizet, Shigetada Kawabata | Journal Of Oral Biosciences | 2025-10-22 | Abstract | |
| Obesity-related microbial dysbiosis as a potential modulator of tumour progression. | Omar Mokhashi, Jaideep Chakladar, Wei Tse Li, Michael Karin, Matthew Uzelac, Weg M Ongkeko | Access Microbiology | 2025-10-21 | Abstract | |
| The chromatin remodeler LET-418/Mi-2 regulates the intracellular pathogen response in the C. elegans intestine. | Shweta Rajopadhye, Vladimir Lažetić, David Rodriguez-Crespo, Emily Troemel, Peter Meister, Chantal Wicky | BMC Genomics | 2025-10-21 | Abstract | |
| Complete genome sequence of bacteriophages Merry and Sunny infecting strain isolated from an outdoor commercial algal pond. | Alice V Levesque, Ariel J Rabines, Entesar Alrubaiaan, Aaron Oliver, Eric E Allen, Dave Hazlebeck, Aga Pinowska, Jesse C Traller, Lisa Zeigler Allen | Microbiology Resource Announcements | 2025-10-20 | Abstract | |
| Safeguarding microbial biodiversity: microbial conservation specialist group within the species survival commission of the International Union for Conservation of Nature. | Jack A Gilbert, Amber Hartman Scholz, Maria Gloria Dominguez Bello, Lise Korsten, Gabriele Berg, Brajesh K Singh, Antje Boetius, Fengping Wang, Chris Greening, Kelly Wrighton, Seth R Bordenstein, Janet Jansson, Jay T Lennon, Valeria Souza, Sarah M Allard, Torsten Thomas, Don Cowan, Thomas W Crowther, Nguyen Nguyen, Lucy Harper, Louis-Patrick Haraoui, Suzanne L Ishaq, Margaret McFall-Ngai, Kent H Redford, Raquel Peixoto | FEMS Microbiology Ecology | 2025-10-20 | Abstract | |
| Industrialization drives convergent microbial and physiological shifts in the human metaorganism. | Mathilde Poyet, Malte Rühlemann, Ana P Schaan, Yue Ma, Lucas Moitinho-Silva, Eike M Wacker, Hannah Jebens, Lucas Patel, Le Thanh Tu Nguyen, Alexis Zimmer, Damian Plichta, Daniel McDonald, Christine Stevens, Adwoa Agyei, Mary Y Afihene, Shadrack O Asibey, Yaw A Awuku, Aida S Badiane, Lee S Ching, Chris Corzett, Awa Deme, Manuel Dominguez-Rodrigo, Amoako Duah, Alain Fezeu, Alain Froment, Sean Gibbons, Catherine Girard, Jeff Hooker, Fatimah Ibrahim, Deborah Iqaluk, Vanessa Juimo, Pinja Kettunen, Sophie Lafosse, Ernest Lango-Yaya, Jenni Lehtimäki, Yvonne A L Lim, Audax Mabulla, Varocha Mahachai, Rihlat S Mohamed, Katya Moniz, Ivan E Mwikarago, Yvonne A Nartey, Daouda Ndiaye, Mary Noel, Charles Onyekwere, Tan M Pin, Amelie Plymoth, Lewis Roberts, Lasse Ruokolainen, John Rusine, Laure Segurel, B Jesse Shapiro, Shani Sigwazi, Ainara Sistiaga, Kenneth Valles, Tommi Vatanen, Ratha-Korn Vilaichone, Philip Rosenstiel, John Baines, Andre Franke, David Ellinghaus, Rob Knight, Mark Daly, Ramnik J Xavier, Eric J Alm, Mathieu Groussin | BioRxiv : The Preprint Server For Biology | 2025-10-20 | Abstract | |
| Simultaneous induction of multiple classes of broadly neutralizing antibody precursors by combination germline-targeting immunization in nonhuman primates. | Henry J Sutton, Krystal M Ma, Jon M Steichen, Torben Schiffner, Tasha K Altheide, Alessia Liguori, Danny Lu, Michael Kubitz, Erik Georgeson, Nicole Phelps, Ryan Tingle, Nushin B Alavi, Elana Ben-Akiva, Xiaoya Zhou, Carolyne Kifude, Claudia T Flynn, Eva Rakasz, Darrell J Irvine, William R Schief, Shane Crotty | Science Immunology | 2025-10-17 | Abstract | |
| Novel bacteriophages effectively target multidrug-resistant clinical isolates of Klebsiella pneumoniae. | Malavika Binitha Hari, A L Sreelekshmi, Pradeesh Babu, Abhijith Pulimoottil Jaykumar, Sivaraj Barath, Sharayu Magar, Sutharsan Govindarajan, John Bernet Johnson, Anil Kumar, Jayalekshmi Haripriyan, Victor Nizet, Jason Gill, Lindsey Camara, Dwayne R Roach, Bipin G Nair, Geetha B Kumar | European Journal Of Clinical Microbiology & Infectious Diseases : Official Publication Of The European Society Of Clinical Microbiology | 2025-10-17 | Abstract | |
| An unconventional HxD motif orchestrates coatomer-dependent coronavirus morphogenesis. | Surovi Mohona, Anil K Shakya, Suruchi Singh, Fiona L Kearns, Kezia Jemison, Satchal Erramilli, Debajit Dey, Enya Qing, Benjamin C Jennings, Balraj Doray, Anthony A Kossiakoff, Rommie E Amaro, Thomas Klose, Tom Gallagher, S Saif Hasan | BioRxiv : The Preprint Server For Biology | 2025-10-17 | Abstract | |
| Toll-like Receptor 4 Contributes to PCOS-like Metabolic and Reproductive Pathogenesis. | Kiara Wiggins, Zena Del Mundo, Julio Ayala Angulo, Nandini Naidu, Angelina Saba, Christopher Garcia, Christy Nguyen, Naveena Ujagar, Jamie-Jean De La Torre, Gabriela De Robles, Angie Rivera, Davina Trinh, Roberto Tinoco, Alexander S Kauffman, Varykina G Thackray, Anshu Agrawal, Marcus Seldin, Gabriela Pacheco Sanchez, Dequina Nicholas | BioRxiv : The Preprint Server For Biology | 2025-10-17 | Abstract | |
| Staphylococcus aureus accessory gene regulator quorum-sensing system inhibits keratinocyte lipid enzymes and delays wound repair. | Michelle D Bagood, Jelena Marjanovic, Nina Jiang, Hung Chan, Tatsuya Dokoshi, Kellen J Cavagnero, Fengwu Li, Andrea Roso-Mares, Samia Almoughrabie, Edward Liu, Irena Pastar, Marjana Tomic-Canic, Alexander R Horswill, Richard L Gallo | The Journal Of Clinical Investigation | 2025-10-15 | Abstract | |
| IDBac: an open-access web platform and compendium for the identification of bacteria by MALDI-TOF mass spectrometry. | Nyssa K Krull, Michael Strobel, Julia Saulog, Liana Zaroubi, Bruno S Paulo, Mandisa Timba, Douglas R Braun, Gabrielle Mingolelli, Jessia Raherisoanjato, Robert A Shepherd, Abigail F Scott, Carlo De Silva, Claire Fergusson, Zachary Daniel, Shailaja K Pokharel, Sean Romanowski, Antonio Hernandez, Mónica Monge-Loría, Claire E Dylla, Manasi M Natu, Valentina Z Petukhova, Neha Garg, Paul R Jensen, Adriana Blachowicz, Chelsi D Cassilly, Lisa Guan, D Cole Stevens, Jaclyn M Winter, Shaun M K McKinnie, Barbara I Adaikpoh, Skylar Carlson, Erin P McCauley, William W Metcalf, Tim S Bugni, Michael W Mullowney, Eric G Pamer, Matthew T Henke, Hazel Barton, David O Carter, Alessandra S Eustáquio, Roger G Linington, Laura M Sanchez, Mingxun Wang, Brian T Murphy | BioRxiv : The Preprint Server For Biology | 2025-10-15 | Abstract | |
| The association of steatotic liver disease with cardiometabolic criteria and cardiovascular disease risk in a large cohort of people living with human immunodeficiency virus. | Richard K Sterling, Alice L Sternberg, Jordan E Lake, Susanna Naggie, Sonya Heath, Jennifer C Price, Laura Wilson, Holly Crandall, Samer Gawrieh, Naga Chalasani, Rohit Loomba, Mark Sulkowski | American Journal Of Preventive Cardiology | 2025-10-15 | Abstract | |
| Streamlined extraction of nucleic acids and metabolites from low- and high-biomass samples using isopropanol and matrix tubes. | Caitriona Brennan, Justin P Shaffer, Pedro Belda-Ferre, Ipsita Mohanty, Yuhan Weng, Kalen Cantrell, Gail Ackermann, Celeste Allaband, MacKenzie Bryant, Sawyer Farmer, Antonio González, Daniel McDonald, Cameron Martino, Michael J Meehan, Gibraan Rahman, Rodolfo A Salido, Tara Schwartz, Se Jin Song, Caitlin Tribelhorn, Helena M Tubb, Pieter C Dorrestein, Rob Knight | Microbiology Spectrum | 2025-10-10 | Abstract | |
| phages predict ACLF while phages predict bacterial infection in decompensated cirrhosis. | Lore Van Espen, Maximilian Joseph Brol, Lila Close, Robert Schierwagen, Wenyi Gu, Marisa I Keller, Boglarka Balogh, Anthony Fullam, Lander De Coninck, Tomohiro Nakamura, Michael Kuhn, Peer Bork, Wim Laleman, Jasmohan S Bajaj, Maria Papp, Bernd Schnabl, Jonel Trebicka, Jelle Matthijnssens, | JHEP Reports : Innovation In Hepatology | 2025-10-10 | Abstract | |
| Gut microbiome and cognitive function in the Hispanic Community Health Study/Study of Latinos. | Natalia Palacios, Scott Gordon, Tao Wang, Robert Burk, Qibin Qi, Curtis Huttenhower, Hector M Gonzalez, Rob Knight, Charles De Carli, Marta Daviglus, Melissa Lamar, Gregory Telavera, Wassim Tarraf, Tomasz Kosciolek, Jianwen Cai, Robert C Kaplan | Journal Of Alzheimer's Disease : JAD | 2025-10-09 | Abstract | |
| Sources of successful participant engagement in a public health research study: A focus on a Latino community. | Angel Lomeli, Arleth A Escoto, Breanna Reyes, Kayleigh Kornher, Keira Beltran-Murillo, Kathia Nuñez, Ariel Cohen, Maria Linda Burola, Isabel Villegas, Scarlet Flores, Ana Perez-Portillo, Norma Porras, Melody Torres, Linda Salgin, Kelli L Cain, Nicole A Stadnick, Louise C Laurent, Borsika A Rabin, Marva Seifert | PloS One | 2025-10-07 | Abstract | |
| Prevalence of Mycoplasma genitalium in a Southern California patient population. | Anh Tran, Alicia Amamoto, Monica Bates, Jesse Leonard, Victoria Carrico, David T Pride | Diagnostic Microbiology And Infectious Disease | 2025-10-02 | Abstract | |
| Temporal nutrition analysis associates dietary regularity and quality with gut microbiome diversity: insights from the Food & You digital cohort. | Rohan Singh, Daniel McDonald, Alejandra Rios Hernandez, Se Jin Song, Andrew Bartko, Rob Knight, Marcel Salathé | Nature Communications | 2025-09-30 | Abstract | |
| Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae. | Zoltán Füssy, Robert H Lampe, Kevin R Arrigo, Kerrie Barry, Margaret M Brisbin, Corina P D Brussaard, Johan Decelle, Colomban de Vargas, Giacomo R DiTullio, Liam D H Elbourne, Marc E Frischer, David M Goodstein, Igor V Grigoriev, Richard D Hayes, Adam L Healey, Chase C James, Jerry W Jenkins, Caroline Juery, Manish Kumar, Adam B Kustka, Florian Maumus, Anna M G Novák Vanclová, Miroslav Oborník, Ian T Paulsen, Ian Probert, Mak A Saito, Jeremy Schmutz, Tomáš Skalický, Diego Tec-Campos, Hannah Tomelka, Pavlína Věchtová, Pratap Venepally, Brendan Wilson-Mortier, Karsten Zengler, Hong Zheng, Andrew E Allen | Nature Communications | 2025-09-29 | Abstract | |
| PMkbase (version 1.0): an interactive web-based tool for tracking bacterial metabolic traits using phenotype microarrays made interoperable with sequence information and visualizing/processing PM data. | K Jayanth Krishnan, Ying Hefner, Richard Szubin, Jonathan Monk, David T Pride, Bernhard Palsson | Microbiology Spectrum | 2025-09-26 | Abstract | |
| Microbial lipid shifts in a multi-stage simulated gut. | Ifrat Tamanna, Katja Salonen, Helena Mannochio-Russo, Matilda Kråkström, Paulo Wender P Gomes, Vincent Charron Lamoureux, Ipsita Mohanty, Sofia D Forssten, Arthur C Ouwehand, Tuulia Hyötyläinen, Alex M Dickens, Pieter C Dorrestein, Matej Orešič, Santosh Lamichhane | BioRxiv : The Preprint Server For Biology | 2025-09-26 | Abstract | |
| N-acetyl-phenylalanine induces hepatic steatosis in MASLD by disrupting ER-mitochondria calcium coupling and mitochondrial lipid oxidation. | Rémy Lefebvre, Théo Rousseaux, Nadia Bendridi, Stéphanie Chanon, Delphine Arquier, Alexandre Humbert, Nicolas Bertocchini, Bruno Pillot, Emmanuelle Meugnier, Aurélie Vieille-Marchiset, Margaux Nawrot, Claudie Pinteur, Sophie Ayciriex, Rohit Loomba, Jennifer Rieusset, Cyrielle Caussy | BioRxiv : The Preprint Server For Biology | 2025-09-26 | Abstract | |
| A Mechanistic Framework for Repurposing FDA-Approved Drugs to Combat Antimicrobial Resistance: The Case of . | Daniel Sun, Victor Nizet | Annual Review Of Pharmacology And Toxicology | 2025-09-25 | Abstract | |
| CaDAVEr: a metagenome-assembled genome catalog of microbial decomposers across vertebrate environments. | Valerie A Seitz, Bridget B McGivern, Michael Shaffer, Mikayla A Borton, Aeriel D Belk, Parsa Ghadermazi, Cameron Martino, Liat Shenhav, Anru R Zhang, Pixu Shi, Alexandra Emmons, Heather Deel, Zhenjiang Zech Xu, Victoria Nieciecki, Qiyun Zhu, Kalen Cantrell, Asa Ben-Hur, Sasha C Reed, Greg C Humphry, Gail Ackermann, Daniel McDonald, Siu Hung Joshua Chan, Melissa Connor, Derek A Boyd, Jake Smith, Jenna M S Watson, Giovanna Vidoli, Dawnie Steadman, Aaron M Lynne, Sibyl Bucheli, David O Carter, Zachary M Burcham, Rob Knight, Kelly C Wrighton, Jessica L Metcalf | Microbiology Resource Announcements | 2025-09-23 | Abstract | |
| Atopic skin resists colonization by beneficial bacteria: A first-in-human analysis of the rate of elimination of topically applied bacteria. | Richard L Gallo, Teruaki Nakatsuji, Andrea Roso Mares, June Moon, Olive Osuoji, Victoria Li, Alexandra Fernandez-Desoto, Angie Wu, Michael Nodzenski, Gloria David, Amaziah Coleman, Tissa R Hata | The Journal Of Investigative Dermatology | 2025-09-23 | Abstract | |
| Enhancing Antimicrobial Susceptibility Testing for Acinetobacter baumannii Using Physiologically Relevant Culture Media and Biofilm Formation Assays. | Nana Yaa P Sakyi Opoku, Arunima Mishra, Hansel Fletcher, Victor Nizet, Jacinda C Abdul-Mutakabbir | Current Protocols | 2025-09-22 | Abstract | |
| Investigating Azithromycin Activity Against ESBL-Producing Escherichia coli Under Physiologically Relevant Conditions. | Sean Jung, Samira Dahesh, Elisabet Bjånes, Jonathan Monk, Natalie Chavarria, Sachiko Correa, Alexandria Hoffman, Hunter Gage, Victor Nizet, Monika Kumaraswamy | The Journal Of Infectious Diseases | 2025-09-17 | Abstract | |
| Neuronal Membrane-Functionalized Biohybrid Microrobots for Active Decontamination of Neurotoxins in Aqueous Environments. | Zhengxing Li, Hao Luan, Zheng Fang, Wei-Ting Shen, Yiyan Yu, Junyi Ji, Robert Kobrin, Jiayuan Alex Zhang, Sven Neuschul, Wesley Tse, Shichao Ding, Dan Wang, Ronnie H Fang, Weiwei Gao, Liangfang Zhang, Joseph Wang | ACS Nano | 2025-09-17 | Abstract | |
| The Impact of pH on Proteolytic Activity in Wound Fluid: Implications for Acid Therapy. | Elany Barbosa da Silva, Meredith J Crane, Lawrence Liu, Danielle J Gelsinger, Alexander R D Jordon, Phuong Le, Jack G Haggett, Samuel A Myers, Robin L McKinney, Craig P Eberson, Amanda M Jamieson, Anthony J O'Donoghue | The Journal Of Biological Chemistry | 2025-09-15 | Abstract | |
| MSLib: efficient generation of open multi-stage fragmentation mass spectral libraries. | Corinna Brungs, Robin Schmid, Steffen Heuckeroth, Aninda Mazumdar, Matúš Drexler, Pavel Šácha, Pieter C Dorrestein, Daniel Petras, Louis-Felix Nothias, Václav Veverka, Radim Nencka, Zdeněk Kameník, Tomáš Pluskal | Nature Methods | 2025-09-15 | Abstract | |
| Transient vascular occlusions in a zebrafish model of mycobacterial brain infection. | Megan I Hayes, Sumedha Ravishankar, Tariq Qayum, Victor Nizet, Cressida A Madigan | PloS One | 2025-09-12 | Abstract | |
| Launching the IUCN Microbial Conservation Specialist Group as a global safeguard for microbial biodiversity. | Jack A Gilbert, Raquel S Peixoto, Amber Hartman Scholz, Maria Gloria Dominguez Bello, Lise Korsten, Gabriele Berg, Brajesh Singh, Antje Boetius, Fengping Wang, Chris Greening, Kelly Wrighton, Seth Bordenstein, Janet K Jansson, Jay T Lennon, Valeria Souza, Torsten Thomas, Don Cowan, Thomas W Crowther, Nguyen Nguyen, Lucy Harper, Louis-Patrick Haraoui, Suzanne L Ishaq, Kent Redford | Nature Microbiology | 2025-09-12 | Abstract | |
| Azapeptide-Based SARS-CoV-2 Main Protease Inhibitors: Design, Synthesis, Enzyme Inhibition, Structural Determination, and Antiviral Activity. | Philipp Flury, Jyoti Vishwakarma, Katharina Sylvester, Nobuyo Higashi-Kuwata, Agnieszka K Dabrowska, Renee Delgado, Ashley Cuell, Rahul Basu, Alexander B Taylor, Ellen Gonçalves de Oliveira, Mateus Sá Magalhães Serafim, Jingxin Qiao, Yan Chen, Shengyong Yang, Anthony J O'Donoghue, Hiroaki Mitsuya, Michael Gütschow, Stefan A Laufer, Christa E Müller, Reuben S Harris, Thanigaimalai Pillaiyar | Journal Of Medicinal Chemistry | 2025-09-11 | Abstract | |
| Drugs and Bugs in Atopic Dermatitis: Benefits to the Skin Microbiome from Targeted Immunotherapies. | Richard L Gallo | The Journal Of Investigative Dermatology | 2025-09-10 | Abstract | |
| Extremophile hotspots linked to containerized industrial waste dumping in a deep-sea basin. | Johanna Gutleben, Sheila Podell, Kira Mizell, Douglas Sweeney, Carlos Neira, Lisa A Levin, Paul R Jensen | PNAS Nexus | 2025-09-09 | Abstract | |
| Rapid Elimination of Culturable SARS-CoV-2 With Intramuscular or Intravenous Administration of Antiviral Monoclonal Antibody Therapy. | Rinki Deo, Manish C Choudhary, Owen T Glover, Rachel Bender Ignacio, Julie Boucau, Kara W Chew, Carlee Moser, Judith S Currier, Joseph J Eron, Arzhang Cyrus Javan, Mark J Giganti, Evgenia Aga, Michael Gibbs, Taylor Cohen, Katie Streicher, Karina Soboleva, Courtney V Fletcher, Eric S Daar, Alexander L Greninger, Robert W Coombs, William Fischer, Michael D Hughes, Davey Smith, David Alain Wohl, Amy K Barczak, Jonathan Z Li | Open Forum Infectious Diseases | 2025-09-08 | Abstract | |
| Breaking the reproducibility barrier with standardized protocols for plant-microbiome research. | Vlastimil Novak, Peter F Andeer, Eoghan King, Jacob Calabria, Connor Fitzpatrick, Jana M Kelm, Kathrin Wippel, Suzanne M Kosina, Benjamin P Bowen, Chris Daum, Matthew Zane, Archana Yadav, Mingfei Chen, Dor Russ, Catharine A Adams, Trenton K Owens, Bradie Lee, Yezhang Ding, Zineb Sordo, Romy Chakraborty, Simon Roux, Adam M Deutschbauer, Daniela Ushizima, Karsten Zengler, Borjana Arsova, Jeffery L Dangl, Paul Schulze-Lefert, Michelle Watt, John P Vogel, Trent R Northen | PLoS Biology | 2025-09-08 | Abstract | |
| Inverse Relationship Between Halophilic Growth and Cell Integrity Under Extremely Chaotropic Conditions. | Luke A Fisher, Alyson R Bovee, Jordan M McKaig, Benjamin Klempay, Alexandra Pontefract, Christopher E Carr, Britney E Schmidt, Jeff S Bowman, Douglas H Bartlett | Astrobiology | 2025-09-06 | Abstract | |
| Temperature alters interactions and keystone taxa in the marine microbiome. | Ewa Merz, Riley J Hale, Erik Saberski, Kasia M Kenitz, Melissa L Carter, Jeff S Bowman, Andrew D Barton | The ISME Journal | 2025-09-04 | Abstract | |
| spp. Antibacterial Activity Induced by Triphenyl Tetrazolium Chloride against : Oxidative Stress Response and Metabolome Changes. | Carolina González-Marín, Camilo García-Botero, Estefanía Metaute-Molina, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein, Valeska Villegas-Escobar | ACS Chemical Biology | 2025-09-04 | Abstract | |
| Culture-independent meta-pangenomics enabled by long-read metagenomics reveals associations with pediatric undernutrition. | Jeremiah J Minich, Nicholas Allsing, M Omar Din, Michael J Tisza, Kenneth Maleta, Daniel McDonald, Nolan Hartwick, Allen Mamerto, Caitriona Brennan, Lauren Hansen, Justin Shaffer, Emily R Murray, Tiffany Duong, Rob Knight, Kevin Stephenson, Mark J Manary, Todd P Michael | Cell | 2025-09-03 | Abstract | |
| Platelet factor 4 modulates endothelial cell antimicrobial activity to enhance bacterial clearance and improve sepsis outcomes. | Anh T P Ngo, Weronika Ortmann, Abigail Skidmore, Hyunjun Kim, Jenna Oberg, Amrita Sarkar, Veronica Bochenek, Nate Levine, Lubica Rauova, Irina Chernysh, Zachary Martinez, Caroline Diorio, Mark Goulian, Victor Nizet, Mortimer Poncz, Kandace Gollomp | BioRxiv : The Preprint Server For Biology | 2025-09-03 | Abstract | |
| Microbes without borders: uniting societies for climate action. | Jay T Lennon, Leonora S Bittleston, Quanrui Chen, Vaughn S Cooper, Julieta Fernández, Jack A Gilbert, Max M Häggblom, Lucy V Harper, Janet K Jansson, Nianzhi Jiao, Elise M Kuurstra, Raquel S Peixoto, Rino Rappuoli, Mark A Schembri, Antonio Ventosa, Diana L Vullo, Chuanlun Zhang, Nguyen K Nguyen | The ISME Journal | 2025-08-28 | Abstract | |
| Structural and functional characteristics of local immune memory formation in SARS-CoV-2-infected cynomolgus macaques. | Dong-Yeon Kim, Green Kim, Taehwan Oh, YoungMin Woo, Bon-Sang Koo, Seung Ho Baek, Eun-Ha Hwang, Gukhui Min, You Jung An, Jinyoung Won, Youngjeon Lee, Kyung Seob Lim, Yujin Kim, Choong-Min Ryu, Victor Nizet, Jung Joo Hong | Clinical Immunology (Orlando, Fla.) | 2025-08-27 | Abstract | |
| Prokaryotic Circadian Systems: Cyanobacteria and Beyond. | Mingxu Fang, Carrie L Partch, Andy LiWang, Susan S Golden | Annual Review Of Microbiology | 2025-08-26 | Abstract | |
| Associations between gut microbiome and circulating cytokines: a cross-sectional analysis in the FINRISK 2002 population cohort. | Hassan Diab, Ville Langén, Li-Fang Yeo, Veikko Salomaa, Aki Havulinna, Leo Lahti, Katariina Pärnänen, Rob Knight, Sirpa Jalkanen, Marko Salmi, Teemu Niiranen, Joonatan Palmu | Gut Pathogens | 2025-08-26 | Abstract | |
| Probiotics derived sodium benzoate improves social behavior of offspring exposed in the maternal immune activation through regulation of histone lysine benzoylation in astrocytes. | Tao Li, Junyu Chen, Kai Mi, Junwen Lei, Zidi Ning, Longya Lu, Zhan Su, Qihui Zhu, Mingyan Lin, Yichao Wang, Juan Wang, Rui Xu, Lora Khaib, Rob Knight, Zhibin Hu, Xingyin Liu | Molecular Psychiatry | 2025-08-25 | Abstract | |
| The Central Importance of Vaccines to Mitigate the Threat of Antibiotic-Resistant Bacterial Pathogens. | Jiaqi Amber Zhang, Victor Nizet | Vaccines | 2025-08-23 | Abstract | |
| HIV broadly neutralizing antibody precursors to the Apex epitope induced in nonhuman primates. | Krystal M Ma, Henry J Sutton, Payal P Pratap, Jon M Steichen, Diane Carnathan, James Quinn, Oleksandr Kalyuzhniy, Alessia Liguori, Sashank Agrawal, Sabyasachi Baboo, Patrick Madden, Christopher A Cottrell, Jordan R Willis, Jeong-Hyun Lee, Elise Landais, Xiaozhen Hu, Parham Ramezani-Rad, Gabriel Ozorowski, Vanessa R Lewis, Jolene K Diedrich, Xiaoya Zhou, Tasha K Altheide, Nicole Phelps, Erik Georgeson, Nushin B Alavi, Danny Lu, Saman Eskandarzadeh, Michael Kubitz, Yumiko Adachi, Tina-Marie Mullen, Murillo Silva, Mariane B Melo, Sunny Himansu, Darrell J Irvine, Dennis R Burton, John R Yates, James C Paulson, Devin Sok, Ian A Wilson, Guido Silvestri, Andrew B Ward, Shane Crotty, William R Schief | Science Immunology | 2025-08-22 | Abstract | |
| Impact of Microencapsulated Benzoyl Peroxide on the Skin Microbiome and Clinical Outcomes in Rosacea: An Update on a Randomized, Double-blind, Crossover, Vehicle-controlled Clinical Trial. | Yvonne Nong, Jeffrey Sugarman, Jean Philippe York, Ofra Levy-Hacham, Dawnica Nadora, Rinat Mizrahi, Aidan Galati, Richard L Gallo, Raja K Sivamani | The Journal Of Clinical And Aesthetic Dermatology | 2025-08-22 | Abstract | |
| Metabolome informs about the chemical exposome and links to brain health. | Matej Orešič, Naama Karu, Haoqi Nina Zhao, Arthur Moseley, Thomas Hankemeier, David S Wishart, Pieter C Dorrestein, Oliver Fiehn, Tuulia Hyötyläinen, Rima Kaddurah Daouk, | Environment International | 2025-08-22 | Abstract | |
| Targeted Microbial Shifts and Metabolite Profiles Were Associated with Clinical Response to an Anti-Inflammatory Diet in Osteoarthritis. | Marta Sala-Climent, Kevin Bu, Roxana Coras, Martha Cedeno, Simone Zuffa, Jessica Murillo-Saich, Helena Mannochio-Russo, Celeste Allaband, Michal K Hose, Anna Quan, Soo-In Choi, Katherine Nguyen, Shahrokh Golshan, Rebecca B Blank, Tiffany Holt, Nancy E Lane, Rob Knight, Jose Scher, Pieter Dorrestein, Jose Clemente, Monica Guma | Nutrients | 2025-08-22 | Abstract | |
| mAChR4 suppresses liver disease via GAP-induced antimicrobial immunity. | Cristina Llorente, Fernanda Raya Tonetti, Ryan Bruellman, Rocío Brea, Nuria Pell, Phillipp Hartmann, Luca Maccioni, Hui Han, Noemí Cabré, Junlai Liu, Alvaro Eguileor, Marcos F Fondevila, Abraham S Meijnikman, Cynthia L Hsu, Ameera Alghafri, Rongrong Zhou, Bei Gao, Yi Duan, Peng Zhang, Mark A Febbraio, Koji Taniguchi, Rodney D Newberry, Derrick E Fouts, David A Brenner, Peter Stärkel, Michael Karin, Bernd Schnabl | Nature | 2025-08-20 | Abstract | |
| Cannabis Use Moderates Methamphetamine- and HIV-Related Inflammation: Evidence from Human Plasma Markers. | Jeffrey M Rogers, Victoria O Chentsova, Crystal X Wang, Maria Cecilia Garibaldi Marcondes, Mariana Cherner, Ronald J Ellis, Scott L Letendre, Robert K Heaton, Igor Grant, Jennifer E Iudicello | Viruses | 2025-08-20 | Abstract | |
| Cyanobacteria Join the Kahalalide Conversation: Genome and Metabolite Evidence for Structurally Related Peptides. | Byeol Ryu, Nicole E Avalon, Marine Cuau, Jehad Almaliti, M Omar Din, Caitriona Brennan, Evgenia Glukhov, Rob Knight, Lena Gerwick, William H Gerwick | Journal Of The American Chemical Society | 2025-08-19 | Abstract | |
| Loss of sialic acid side-chain -acetylation exacerbates colitis. | Yang Ji, Shubham Parashar, Yukiko Miyamoto, Saurabh Srivastava, Amanda L Lewis, Nissi Varki, Ajit Varki, Lars Eckmann | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2025-08-19 | Abstract | |
| Advances in artificial intelligence and precision nutrition approaches to improve maternal and child health in low resource settings. | Saurabh Mehta, Samantha L Huey, Shah Mohammad Fahim, Srishti Sinha, Kripa Rajagopalan, Tahmeed Ahmed, Rob Knight, Julia L Finkelstein | Nature Communications | 2025-08-18 | Abstract | |
| Reverse Spectral Search Reimagined: A Simple but Overlooked Solution for Chimeric Spectral Annotation. | Shipei Xing, Vincent Charron-Lamoureux, Haoqi Nina Zhao, Yasin El Abiead, Mingxun Wang, Pieter C Dorrestein | Analytical Chemistry | 2025-08-15 | Abstract | |
| Blood microbial DNA signature differentiates hepatocellular carcinoma from metastatic lesions. | Caitlin Guccione, Ana Carolina Dantas Machado, Fady Youssef, Isabella Angeli-Pahim, Sergio Duarte, Curtis Warren, Sawyer Farmer, Gregory Humphrey, Roland Alexander Richter, Daniel McDonald, Yuhan Weng, Adam Burgoyne, Rohit Loomba, Kit Curtius, Ali Zarrinpar, Rob Knight, Amir Zarrinpar | EGastroenterology | 2025-08-14 | Abstract | |
| Recombinant proteasome provides new avenues for anti-malarial drug development. | Pavla Fajtova, Hanxiao Zhang, Liam Urich, Elany Barbosa da Silva, Cesar Hoffmann da Silva, Jehad Almaliti, Momen Al-Hindy, Evzen Boura, David A Fidock, Laura A Kirkman, Gang Lin, Matthew Bogyo, William H Gerwick, Jianhua Zhao, Anthony J O'Donoghue | BioRxiv : The Preprint Server For Biology | 2025-08-14 | Abstract | |
| Geography and Host Identity Shape Intraseasonal Variation of Free-Living and Zooplankton Associated Microbial Communities in Alpine Lakes. | Christopher B Wall, Madeline G Perreault, Margaret Y Demmel, Evelyn M Diaz, Joshua H Dominguez, Jonathan B Shurin | Molecular Ecology | 2025-08-12 | Abstract | |
| The mass spectrometry of microbiome-mediated metabolism of food: challenges and opportunities. | Harsha Gouda, Julius Agongo, Andrés Mauricio Caraballo-Rodríguez, Pieter C Dorrestein | Current Opinion In Microbiology | 2025-08-08 | Abstract | |
| Chronological age estimation from human microbiomes with transformer-based Robust Principal Component Analysis. | Tyler Myers, Se Jin Song, Yang Chen, Britta De Pessemier, Lora Khatib, Daniel McDonald, Shi Huang, Richard Gallo, Chris Callewaert, Aki S Havulinna, Leo Lahti, Guus Roeselers, Manolo Laiola, Sudarshan A Shetty, Scott T Kelley, Rob Knight, Andrew Bartko | Communications Biology | 2025-08-06 | Abstract | |
| Systemic Availability of Human Milk Oligosaccharides in Infants and Adults: A Narrative Review. | Sabrina Schenk, Lars Bode, Stina Rikke Jensen, Yannik Bernd Schönknecht, Marie-Christine Simon | Advances In Nutrition (Bethesda, Md.) | 2025-08-06 | Abstract | |
| Intronic miR-342 is a key regulator of cellular glycolysis in Foxp3+ regulatory CD4 T cells. | Rongzhen Yu, Sohee Kim, Silei Li, Wenjing Yang, Giha Kim, Li-Fan Lu, Yingzi Cong, Dongkyun Kim, Booki Min | Journal Of Immunology (Baltimore, Md. : 1950) | 2025-08-06 | Abstract | |
| Longitudinal big biological data in the AI era. | Adil Mardinoglu, Hasan Turkez, Minho Shong, Vishnuvardhan Pogunulu Srinivasulu, Jens Nielsen, Bernhard O Palsson, Leroy Hood, Mathias Uhlen | Molecular Systems Biology | 2025-08-05 | Abstract | |
| Laboratory Evolution Reveals Transcriptional Mechanisms Underlying Thermal Adaptation of Escherichia coli. | Kevin Rychel, Ke Chen, Edward A Catoiu, Elina Olson, Troy E Sandberg, Ye Gao, Sibei Xu, Ying Hefner, Richard Szubin, Arjun Patel, Adam M Feist, Bernhard O Palsson | Genome Biology And Evolution | 2025-08-02 | Abstract | |
| Pre-Pasteurization Screening Protocol Reduces Donor Human Milk Loss. | Sydney McCune, Lisa Stellwagen, Carrie L Byington, Alison Wolf, Nguyen Nguyen, Lars Bode | Breastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine | 2025-08-01 | Abstract | |
| Interaction between haploinsufficiency of PTPN2 and patient microbiome promotes autoimmune arthritis in mice. | Sho Sendo, Allison J Vela, Myungja Ro, Deepan Thiruppathy, Elizabeth L Wilkinson, Zixuan Zhao, Wan-Chen Hsieh, Shen Yang, Roxana Coras, Anne-Sophie Bergot, Monica Guma, Anders Nguyen, David A McBride, Suzanne Devkota, Ranjeny Thomas, Nisarg J Shah, Mattias N D Svensson, Karsten Zengler, Stephanie M Stanford, Nunzio Bottini | Journal Of Autoimmunity | 2025-07-31 | Abstract | |
| Treatment with intravenous immunoglobulin modulates coagulation- and complement-related pathways in COVID-19 patients. | Dominic McGrosso, Jessica Raygoza, Avnee J Kumar, Michael T Y Lam, Laura A Barnes, Sophia Karandashova, Alexia Perryman, Matthew Geriak, Mazen F Odish, Nicole G Coufal, Brian Lichtenstein, George Sakoulas, Angela Meier, Victor Nizet, Jorge A Masso-Silva | Frontiers In Immunology | 2025-07-31 | Abstract | |
| Vaccination with an mRNA-encoded membrane-bound HIV envelope trimer induces neutralizing antibodies in animal models. | Parham Ramezani-Rad, Christopher A Cottrell, Ester Marina-Zárate, Alessia Liguori, Elise Landais, Jonathan L Torres, Amber Myers, Jeong Hyun Lee, Sabyasachi Baboo, Claudia Flynn, Katherine McKenney, Eugenia Salcedo, Xiaoya Zhou, Oleksandr Kalyuzhniy, Erik Georgeson, Nicole Phelps, Danny Lu, Saman Eskandarzadeh, Sergey Menis, Michael Kubitz, Bettina Groschel, Nushin Alavi, Abigail M Jackson, Wen-Hsin Lee, Andy S Tran, Elana Ben-Akiva, Katarzyna Kaczmarek Michaels, Jolene K Diedrich, Chiamaka A Enemuo, Vanessa Lewis, Arpan Pradhan, Sudhir Pai Kasturi, Torben Schiffner, Jon M Steichen, Diane G Carnathan, Sunny Himansu, John R Yates, James C Paulson, Gabriel Ozorowski, Darrell J Irvine, Guido Silvestri, Devin Sok, Andrew B Ward, Shane Crotty, William R Schief | Science Translational Medicine | 2025-07-30 | Abstract | |
| Gynecologic Oncology Patients have Urobiomes that are Similar to Women Without Gynecologic Cancer. | Anisa Nasse, Abigail Winder, Melline Fontes Noronha, Margaret R Liotta, Ronald K Potkul, Elizabeth R Mueller, Linda Brubaker, Alan J Wolfe | International Urogynecology Journal | 2025-07-29 | Abstract | |
| Genotype and microbiome shape immunity in a sex-specific manner in mouse models of Alzheimer's disease. | John W Bostick, T Jaymie Connerly, Taren Thron, Brittany D Needham, Matheus de Castro Fonseca, Rima Kaddurah-Daouk, Rob Knight, Sarkis K Mazmanian | Brain, Behavior, And Immunity | 2025-07-28 | Abstract | |
| Microbiota and kidney disease: the road ahead. | Patricia P Bloom, Wendy S Garrett, Kristina L Penniston, Mari-Karoliina H Winkler, Stanley L Hazen, Jose Agudelo, Mangesh Suryavanshi, Ahmed Babiker, Dylan Dodd, Michael A Fischbach, Kerwyn Casey Huang, Curtis Huttenhower, Bina Joe, Kamyar Kalantar-Zadeh, Rob Knight, Aaron W Miller, Hamid Rabb, Anvesha Srivastava, W H Wilson Tang, Peter J Turnbaugh, Alan W Walker, Nicola Wilck, Jiaojiao Xu, Tao Yang, Jonathan Himmelfarb, Matthew R Redinbo, Gary D Wu, Michael H Woodworth, A Lenore Ackerman, Sebastian Winter, Markus M Rinschen, Hatim A Hassan, Annabel Biruete, Amanda H Anderson, Jennifer L Pluznick | Nature Reviews. Nephrology | 2025-07-28 | Abstract | |
| Real-time, multi-pathogen wastewater genomic surveillance with Freyja 2. | Joshua I Levy, Praneeth Gangavarapu, Dylan A Pilz, Maryam Ahmadi Jesvaghane, Allison Steedman, Mark Zeller, Karthik Gangavarapu, Daniel McDonald, Kevin Libuit, Curtis Kapsak, Erin L Young, Shelesh Agrawal, Laura Orschler, Martin Hölzer, Elyse Stachler, Daniel J Park, Angie S Hinrichs, Louise C Laurent, Rob Knight, Kristian G Andersen | MedRxiv : The Preprint Server For Health Sciences | 2025-07-27 | Abstract | |
| STING-adjuvanted outer membrane vesicle nanoparticle vaccine against Pseudomonas aeruginosa. | Elisabet Bjånes, Nishta Krishnan, Truman Koh, Anh Tp Ngo, Jason Cole, Joshua Olson, Ingrid Cornax, Chih-Ho Chen, Natalie Chavarria, Samira Dahesh, Shawn M Hannah, Alexandra Stream, Jiaqi Amber Zhang, Hervé Besançon, Daniel Sun, Siri Yendluri, Sydney Morrill, Jiarong Zhou, Animesh Mohapatra, Ronnie H Fang, Victor Nizet | JCI Insight | 2025-07-24 | Abstract | |
| Microbial production of creatine using growth-coupled selection systems. | Jinbei Li, Simon R Krarup, Pascal Pieters, Tobias B Alter, Paul Jacottin, Josefin Johnsen, Elsayed T Mohamed, Thomas Harris, Linda Ahonen, Khem Bahadur Adhikari, Bernhard O Palsson, Adam M Feist, Lei Yang | Metabolic Engineering | 2025-07-23 | Abstract | |
| Driving a protective allele of the mosquito FREP1 gene to combat malaria. | Zhiqian Li, Yuemei Dong, Lang You, Rodrigo M Corder, Jemariz Arzobal, Audrey Yeun, Lei Yang, John M Marshall, George Dimopoulos, Ethan Bier | Nature | 2025-07-23 | Abstract | |
| Substrate profiling of marine-derived thermotolerant cysteine protease reveals unique cleavage preferences for industrial applications. | Victoria Røyseth, Brianna M Hurysz, Hasan Arsın, Julia M Vazquez, Anna-Karina Kaczorowska, Anita-Elin Fedøy, Daria Biernacka, Sebastian Dorawa, Tadeusz Kaczorowski, Runar Stokke, Anthony J O'Donoghue, Ida Helene Steen | Scientific Reports | 2025-07-21 | Abstract | |
| Discovery and characterization of vertebrate sialoglycan-binding proteins. | Liran Adler, Sharon Yehuda, Ajit Varki, Vered Padler-Karavani | Seminars In Immunology | 2025-07-18 | Abstract | |
| Integrative genomic reconstruction reveals heterogeneity in carbohydrate utilization across human gut bifidobacteria. | Aleksandr A Arzamasov, Dmitry A Rodionov, Matthew C Hibberd, Janaki L Guruge, James E Kent, Marat D Kazanov, Semen A Leyn, Marinela L Elane, Kristija Sejane, Annalee Furst, Lars Bode, Michael J Barratt, Jeffrey I Gordon, Andrei L Osterman | Nature Microbiology | 2025-07-16 | Abstract | |
| Unveiling organ-specific metabolism of . | Anurag Passi, Diego Tec-Campos, Manish Kumar, Juan D Tibocha-Bonilla, Cristal Zuñiga, Beth Peacock, Amanda Hale, Rodrigo Santibáñez-Palominos, James Borneman, Karsten Zengler | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2025-07-16 | Abstract | |
| Psychiatric disorders converge on common pathways but diverge in cellular context, spatial distribution, and directionality of genetic effects. | Worrawat Engchuan, Omar Shanta, Kuldeep Kumar, Jeffrey R MacDonald, Bhooma Thiruvahindrapuram, Omar Hamdan, Marieke Klein, Adam Maihofer, James Guevara, Oanh Hong, Guillaume Huguet, Molly Sacks, Mohammad Ahangari, Rayssa M M W Feitosa, Kara Han, Marla Mendes, Xiaopu Zhou, Nelson X Bautista, Giovanna Pellecchia, Zhouzhi Wang, Daniele Merico, Ryan K C Yuen, Brett Trost, Ida Sønderby, Mark J Adams, Rolf Adolfsson, Ingrid Agartz, Allison E Aiello, Martin Alda, Judith Allardyce, Ananda B Amstadter, Till F M Andlauer, Ole A Andreassen, María S Artigas, S Bryn Austin, Muhammad Ayub, Dewleen G Baker, Nick Bass, Bernhard T Baune, Maximilian Bayas, Klaus Berger, Joanna M Biernacka, Tim Bigdeli, Jonathan I Bisson, Douglas Blackwood, Marco Boks, David Braff, Elvira Bramon, Gerome Breen, Tanja Brueckl, Richard A Bryant, Cynthia M Bulik, Joseph Buxbaum, Murray J Cairns, Jose M Caldas-de-Almeida, Megan Campbell, Dominique Campion, Vaughan J Carr, Enrique Castelao, Boris Chaumette, Sven Cichon, David Cohen, Aiden Corvin, Nicholas Craddock, Jennifer Crosbie, Darrina Czamara, Udo Dannlowski, Franziska Degenhardt, Douglas L Delahanty, Astrid Dempfle, Guillaume Desachy, Arianna Di Florio, Faith B Dickerson, Srdjan Djurovic, Katharina Domschke, Lisa Douglas, Ole K Drange, Laramie E Duncan, Howard J Edenberg, Tonu Esko, Steve Faraone, Norah C Feeny, Andreas J Forstner, Barbara Franke, Mark Frye, Dong-Jing Fu, Janice M Fullerton, Anna Gareeva, Linda Garvert, Justine M Gatt, Pablo Gejman, Daniel H Geschwind, Ina Giegling, Stephen J Glatt, Joe Glessner, Fernando S Goes, Katherine Gordon-Smith, Hans Grabe, Melissa J Green, Michael F Green, Tiffany Greenwood, Maria Grigoroiu-Serbanescu, Raquel E Gur, Ruben C Gur, Jose Guzman-Parra, Jan Haavik, Tim Hahn, Hakon Hakonarson, Joachim Hallmayer, Marian L Hamshere, Annette M Hartmann, Arsalan Hassan, Caroline Hayward, Johannes Hebebrand, Sian M J Hemmings, Stefan Herms, Marisol Herrera-Rivero, Anke Hinney, Georg Homuth, Andrés Ingason, Lucas T Ito, Nakao Iwata, Ian Jones, Lisa A Jones, Lina Jonsson, Erik G Jönsson, René S Kahn, Robert Karlsson, Milissa L Kaufman, John R Kelsoe, James L Kennedy, Anthony King, Tilo Kircher, George Kirov, Per Knappskog, James A Knowles, Nene Kobayashi, Karestan C Koenen, Bettina Konte, Mayuresh Korgaonkar, Kaarina Kowalec, Marie-Odile Krebs, Mikael Landén, Claudine Laurent-Levinson, Lauren A Lebois, Doug Levinson, Cathryn Lewis, Qingqin Li, Israel Liberzon, Greg Light, Sandra K Loo, Yi Lu, Susanne Lucae, Charles Marmar, Nicholas G Martin, Fermin Mayoral, Andrew M McIntosh, Katie A McLaughlin, Samuel A McLean, Andrew McQuillin, Sarah E Medland, Andreas Meyer-Lindenberg, Vihra Milanova, Philip B Mitchell, Esther Molina, Bryan Mowry, Bertram Muller-Myhsok, Niamh Mullins, Robin Murray, Markus M Nöthen, John I Nurnberger, Kevin S O'Connell, Roel A Ophoff, Holly K Orcutt, Michael J Owen, Aarno Palotie, Carlos Pato, Michele Pato, Joanna Pawlak, Triinu Peters, Tracey L Petryshen, Giorgio Pistis, James B Potash, John Powell, Martin Preisig, Digby Quested, Josep A Ramos-Quiroga, Andreas Reif, Kerry J Ressler, Marta Ribasés, Marcella Rietschel, Victoria B Risbrough, Margarita Rivera, Alex O Rothbaum, Barbara O Rothbaum, Dan Rujescu, Takeo Saito, Alan R Sanders, Russell J Schachar, Peter R Schofield, Eva C Schulte, Thomas G Schulze, Laura J Scott, Soraya Seedat, Christina Sheerin, Jianxin Shi, Pamela Sklar, Susan Smalley, Olav B Smeland, Jordan W Smoller, Edmund Sonuga-Barke, David St Clair, Nils Eiel Steen, Dan Stein, Frederike Stein, Murray B Stein, Fabian Streit, Neal Swerdlow, Florence Thibaut, Johan H Thygesen, Ilgiz Timerbulatov, Claudio Toma, Edward Trapido, Micheline Tremblay, Ming T Tsuang, Monica Uddin, Marquis P Vawter, John B Vincent, Henry Völzke, James T Walters, Cynthia S Weickert, Lauren A Weiss, Myrna M Weissman, Thomas Werge, Stephanie H Witt, Miguel Xavier, Robert Yolken, Ross M Young, Tetyana Zayats, Lori A Zoellner, , , , , , , , Kimberley Kendall, Brien Riley, Naomi R Wray, Michael C O'Donovan, Patrick F Sullivan, Sandra Sanchez-Roige, Caroline M Nievergelt, Sébastien Jacquemont, Stephen W Scherer, Jonathan Sebat | MedRxiv : The Preprint Server For Health Sciences | 2025-07-16 | Abstract | |
| PgtE protease enables virulent to evade C3-mediated serum and neutrophil killing. | Michael H Lee, Araceli Perez-Lopez, Leigh A Knodler, Grace Nguyen, Gregory T Walker, Judith Behnsen, Steven Silva, Jean Celli, Melissa A Tamin, Michael H Liang, Karine Melchior, Felix A Argueta, Sean-Paul Nuccio, Manuela Raffatellu | MBio | 2025-07-14 | Abstract | |
| Epigenetic silencing of interleukin-10 by host-derived oxidized phospholipids supports a lethal inflammatory response to infections. | Marco Di Gioia, Valentina Poli, Piao J Tan, Roberto Spreafico, Anne Chu, Alex G Cuenca, Zhongyang Wu, Mehdi Benamar, Laura Pandolfi, Federica Meloni, Fatemeh Askarian, Jason Hsiao, Elizaveata Borroum, Victor Nizet, Philip L S M Gordts, Joseph L Witztum, Talal A Chatila, Janet Chou, Xu Zhou, James R Springstead, Ivan Zanoni | Immunity | 2025-07-12 | Abstract | |
| Picoeukaryote-based biohybrid microrobots for active delivery in the kidney. | Zhengxing Li, Dan Wang, Hao Luan, An-Yi Chang, Zheng Fang, Lei Sun, Junyi Ji, Wei-Ting Shen, Yiyan Yu, Yiyang Yan, Shichao Ding, Jiayuan Alex Zhang, Yichen Zhang, Yifei Peng, Ronnie H Fang, Weiwei Gao, Liangfang Zhang, Joseph Wang | Science Advances | 2025-07-11 | Abstract | |
| The mevalonate pathway of isoprenoid biosynthesis supports metabolic flexibility in . | Christine M Qabar, Edward E K Baidoo, Emine Akyuz Turumtay, Tariq M Qayum, Jay D Keasling, Cressida A Madigan, Daniel A Portnoy, Jeffery S Cox | BioRxiv : The Preprint Server For Biology | 2025-07-11 | Abstract | |
| Metagenomic Identification of Brominated Indole Biosynthetic Machinery from Cyanobacteria. | Sanjoy Adak, Alexander B Chase, Anna E Skrip, Bradley S Moore, April L Lukowski | Journal Of Natural Products | 2025-07-10 | Abstract | |
| Overturning circulation structures the microbial functional seascape of the South Pacific. | Bethany C Kolody, Rohan Sachdeva, Hong Zheng, Zoltán Füssy, Eunice Tsang, Rolf E Sonnerup, Sarah G Purkey, Eric E Allen, Jillian F Banfield, Andrew E Allen | Science (New York, N.Y.) | 2025-07-10 | Abstract | |
| Self-reported everyday functioning among adults with human immunodeficiency virus: Longitudinal associations with global neurocognitive functioning and depressive symptoms. | Maximo R Prescott, Emily W Paolillo, Carlos D Rivera Saldana, Donald Franklin, Elizabeth C Pasipanodya, Mariam A Hussain, Raeanne C Moore, Robert K Heaton, Jessica L Montoya, David J Moore, | Journal Of The International Neuropsychological Society : JINS | 2025-07-07 | Abstract | |
| Current state of microbiota clinical applications in neonatal and pediatric bacterial infections. | Thanh Thien Le, Tram Ngoc Hoang, Dylan Huy Do, Xuan-Hung Nguyen, Cynthia Huynh, Hang Dao Viet, Vu Quoc Dat, Karsten Zengler, Jack A Gilbert, Sean N Avedissian, Tri Minh Tran, Jennifer Le | Gut Microbes | 2025-07-06 | Abstract | |
| HIV Integration into the PTEN Gene and Its Tumor Microenvironment Implications for Lung Cancer. | Davey M Smith, Elizabeth F Rowland, Sara Gianella, Sandip Pravin Patel, Stephanie Solso, Cheryl Dullano, Robert Deiss, Daria Wells, Caroline Ignacio, Gemma Caballero, Magali Porrachia, Collin Kieffer, Antoine Chaillon | Current Oncology (Toronto, Ont.) | 2025-07-04 | Abstract | |
| Group B Streptococci lyse endothelial cells to infect the brain in a zebrafish meningitis model. | Sumedha Ravishankar, Samantha M Tuohey, Nicole O Ramos, Satoshi Uchiyama, Megan I Hayes, Kalisa Kang, Victor Nizet, Cressida A Madigan | PLoS Biology | 2025-07-03 | Abstract | |
| Variation and prognostic potential of the gut antibiotic resistome in the FINRISK 2002 cohort. | Katariina Pärnänen, Matti O Ruuskanen, Guilhem Sommeria-Klein, Ville Laitinen, Pyry Kantanen, Guillaume Méric, Camila Gazolla Volpiano, Michael Inouye, Rob Knight, Veikko Salomaa, Aki S Havulinna, Teemu Niiranen, Leo Lahti | Nature Communications | 2025-07-01 | Abstract | |
| A three-country analysis of the gut microbiome indicates taxon associations with diet vary by taxon resolution and population. | Lora Khatib, Se Jin Song, Amanda H Dilmore, Jon G Sanders, Caitriona Brennan, Alejandra Rios Hernandez, Tyler Myers, Renee Oles, Sawyer Farmer, Charles Cowart, Amanda Birmingham, Edgar A Diaz, Oliver Nizet, Kat Gilbert, Nicole Litwin, Promi Das, Brent Nowinski, Mackenzie Bryant, Caitlin Tribelhorn, Karenina Sanders-Bodai, Soline Chaumont, Jan Knol, Guus Roeselers, Manolo Laiola, Sudarshan A Shetty, Patrick Veiga, Julien Tap, Muriel Derrien, Hana Koutnikova, Aurélie Cotillard, Christophe Lay, Armando R Tovar, Nimbe Torres, Liliana Arteaga, Antonio González, Daniel McDonald, Andrew Bartko, Rob Knight | MSystems | 2025-06-30 | Abstract | |
| The microbiota vault initiative: safeguarding Earth's microbial heritage for future generations. | Maria G Dominguez-Bello, Dominik Steiger, Manuel Fankhauser, Adrian Egli, Pascale Vonaesch, Nicholas A Bokulich, Anton Lavrinienko, Christian Hoffmann, Petra Zimmermann, Abdifatah Muhummed, Somphou Sayasone, Amma Larbi, Segla Wilfrid Padonou, Jakob Zinsstag, Rea Tschopp, Chalat Santivarangkna, Diana Albertos Torres, Yuen Yi Li, Vanni Benvenga, Youzheng Teo, Marcel Houngbédji, Alex Kwarteng, Rob Knight, Jack A Gilbert, Martin J Blaser | Nature Communications | 2025-06-27 | Abstract | |
| Evolution of SARS-CoV-2 T cell responses as a function of multiple COVID-19 boosters. | Ricardo da Silva Antunes, Vicente Fajardo-Rosas, Esther Dawen Yu, Rosa Isela Gálvez, Adam Abawi, E Alexandar Escarrega, Amparo Martínez-Pérez, Emil Johansson, Benjamin Goodwin, April Frazier, Jennifer M Dan, Shane Crotty, Grégory Seumois, Daniela Weiskopf, Pandurangan Vijayanand, Alessandro Sette | Cell Reports | 2025-06-26 | Abstract | |
| Pathway-Specific Polygenic Scores for Predicting Clinical Lithium Treatment Response in Patients With Bipolar Disorder. | Nigussie T Sharew, Scott R Clark, Sergi Papiol, Urs Heilbronner, Franziska Degenhardt, Janice M Fullerton, Liping Hou, Tatyana Shekhtman, Mazda Adli, Nirmala Akula, Kazufumi Akiyama, Raffaella Ardau, Bárbara Arias, Roland Hasler, Hélène Richard-Lepouriel, Nader Perroud, Lena Backlund, Abesh Kumar Bhattacharjee, Frank Bellivier, Antonio Benabarre, Susanne Bengesser, Joanna M Biernacka, Armin Birner, Cynthia Marie-Claire, Pablo Cervantes, Hsi-Chung Chen, Caterina Chillotti, Sven Cichon, Cristiana Cruceanu, Piotr M Czerski, Nina Dalkner, Maria Del Zompo, J Raymond DePaulo, Bruno Étain, Stephane Jamain, Peter Falkai, Andreas J Forstner, Louise Frisen, Mark A Frye, Sébastien Gard, Julie S Garnham, Fernando S Goes, Maria Grigoroiu-Serbanescu, Andreas J Fallgatter, Sophia Stegmaier, Thomas Ethofer, Silvia Biere, Kristiyana Petrova, Ceylan Schuster, Kristina Adorjan, Monika Budde, Maria Heilbronner, Janos L Kalman, Mojtaba Oraki Kohshour, Daniela Reich-Erkelenz, Sabrina K Schaupp, Eva C Schulte, Fanny Senner, Thomas Vogl, Ion-George Anghelescu, Volker Arolt, Udo Dannlowski, Detlef E Dietrich, Christian Figge, Markus Jäger, Fabian U Lang, Georg Juckel, Carsten Konrad, Jens Reimer, Max Schmauß, Andrea Schmitt, Carsten Spitzer, Martin von Hagen, Jens Wiltfang, Jörg Zimmermann, Till F M Andlauer, Andre Fischer, Felix Bermpohl, Philipp Ritter, Silke Matura, Anna Gryaznova, Irina Falkenberg, Cüneyt Yildiz, Tilo Kircher, Julia Schmidt, Marius Koch, Kathrin Gade, Sarah Trost, Ida S Haussleiter, Martin Lambert, Anja C Rohenkohl, Vivien Kraft, Paul Grof, Ryota Hashimoto, Joanna Hauser, Stefan Herms, Per Hoffmann, Esther Jiménez, Jean-Pierre Kahn, Layla Kassem, Po-Hsiu Kuo, Tadafumi Kato, John Kelsoe, Sarah Kittel-Schneider, Ewa Ferensztajn-Rochowiak, Barbara König, Ichiro Kusumi, Gonzalo Laje, Mikael Landén, Catharina Lavebratt, Marion Leboyer, Susan G Leckband, Alfonso Tortorella, Mirko Manchia, Lina Martinsson, Michael J McCarthy, Susan McElroy, Francesc Colom, Vincent Millischer, Marina Mitjans, Francis M Mondimore, Palmiero Monteleone, Caroline M Nievergelt, Markus M Nöthen, Tomas Novák, Claire O'Donovan, Norio Ozaki, Andrea Pfennig, Claudia Pisanu, James B Potash, Andreas Reif, Eva Reininghaus, Guy A Rouleau, Janusz K Rybakowski, Martin Schalling, Peter R Schofield, Barbara W Schweizer, Giovanni Severino, Paul D Shilling, Katzutaka Shimoda, Christian Simhandl, Claire M Slaney, Alessio Squassina, Thomas Stamm, Pavla Stopkova, Mario Maj, Gustavo Turecki, Eduard Vieta, Julia Veeh, Biju Viswanath, Stephanie H Witt, Adam Wright, Peter P Zandi, Philip B Mitchell, Michael Bauer, Martin Alda, Marcella Rietschel, Francis J McMahon, Thomas G Schulze, Bernhard T Baune, Klaus Oliver Schubert, Azmeraw T Amare | Biological Psychiatry Global Open Science | 2025-06-25 | Abstract | |
| Guidelines for preventing and reporting contamination in low-biomass microbiome studies. | Noah Fierer, Pok Man Leung, Rachael Lappan, Raphael Eisenhofer, Francesco Ricci, Sophie I Holland, Nicholas Dragone, Linda L Blackall, Xiyang Dong, Cristina Dorador, Belinda C Ferrari, Jacqueline Goordial, Susan P Holmes, Fumio Inagaki, Tal Korem, Simone S Li, Thulani P Makhalanyane, Jessica L Metcalf, Niranjan Nagarajan, William D Orsi, Erin R Shanahan, Alan W Walker, Laura S Weyrich, Jack A Gilbert, Amy D Willis, Benjamin J Callahan, Ashley Shade, Julian Parkhill, Jillian F Banfield, Chris Greening | Nature Microbiology | 2025-06-20 | Abstract | |
| Functional Genomics and Structural Insights into Maize Aldo-Keto Reductase-4 Family: Stress Metabolism and Substrate Specificity in Embryos. | Sylvia Morais de Sousa, Priscila Oliveira de Giuseppe, Mario Tyago Murakami, Jiahn-Chou Guan, Jonathan W Saunders, Eduardo Kiyota, Marcelo Leite Santos, Eric A Schmelz, Jose Andres Yunes, Karen E Koch | The Journal Of Biological Chemistry | 2025-06-20 | Abstract | |
| Untargeted and semi-targeted metabolomics approach for profiling small intestinal and fecal metabolome using high-resolution mass spectrometry. | Alexandre Tronel, Morgane Roger-Margueritat, Caroline Plazy, Valérie Cunin, Ipsita Mohanty, Pieter C Dorrestein, Thomas Soranzo, Audrey Le Gouellec | Metabolomics : Official Journal Of The Metabolomic Society | 2025-06-19 | Abstract | |
| Clock-Dependent Phosphorylation of CikA Regulates Its Activity. | Cigdem Sancar, Susan S Golden | Journal Of Biological Rhythms | 2025-06-19 | Abstract | |
| Host traits and environmental variation shape gut microbiota diversity in wild threespine stickleback. | Andreas Härer, Emma Kurstjens, Diana J Rennison | Animal Microbiome | 2025-06-18 | Abstract | |
| Metatranscriptomics Uncover Diurnal Functional Shifts in Bacterial Transgenes with Profound Metabolic Effects. | Stephany Flores Ramos, Nicole Siguenza, Wuling Zhong, Ipsita Mohanty, Amulya Lingaraju, R Alexander Richter, Smruthi Karthikeyan, April L Lukowski, Qiyun Zhu, Wilhan D G Nunes, Jasmine Zemlin, Zhenjiang Zech Xu, Jeff Hasty, Pieter C Dorrestein, Satchidananda Panda, Rob Knight, Amir Zarrinpar | Cell Host & Microbe | 2025-06-18 | Abstract | |
| CRISPRi screening reveals 's anaerobic-like respiratory adaptations to gentamicin: membrane depolarization by CpxR. | Donghui Choe, Eunju Lee, Yoseb Song, Sun Chang Kim, Ki Jun Jeong, Bernhard Palsson, Byung-Kwan Cho, Suhyung Cho | MSystems | 2025-06-16 | Abstract | |
| Optimizing mouse metatranscriptome profiling by selective removal of redundant nucleic acid sequences. | Morgan Roos, Samuel Bunga, Asako Tan, Erica Maissy, Dylan Skola, Alexander Richter, Daniel S Whittaker, Paula Desplats, Amir Zarrinpar, Rick Conrad, Scott Kuersten | MSystems | 2025-06-16 | Abstract | |
| The transcriptional regulatory network of the Escherichia coli MG1655 reference strain. | Heera Bajpe, Jongoh Shin, Ying Hefner, Richard Szubin, Jaemin Sung, Yuan Yuan, Bernhard O Palsson | Nucleic Acids Research | 2025-06-16 | Abstract | |
| Microenvironmental Effects of a Non-Antibiotic Therapy for a Chronic Polymicrobial Infection Alter Microbial Physiology, Competition, and Virulence. | Cely T González, Christian Martin, Maddey Crane, Karen Gutierrez, Jacob Thomas, Lacy Remisoski, Maxwell Okros, Yousi Fu, Douglas V Guzior, Dustin Finkhouse, Christopher Bridges, Jenna Mielke, Gabriel Querido, Lienwil Padillo, Reda Girgis, Marc McClelland, Douglas Conrad, Xiaopeng Li, Robert A Quinn | The ISME Journal | 2025-06-14 | Abstract | |
| Murine maternal microbiome modifies adverse effects of protein undernutrition on offspring neurobehaviour. | Elena J Coley-O'Rourke, Gregory R Lum, Geoffrey N Pronovost, Lewis W Yu, Ezgi Özcan, Kristie B Yu, Janet McDermott, Anna Chakhoyan, Eliza Goldman, Helen E Vuong, Jorge Paramo, Sydney McCune, Kristija Sejane, Simone Renwick, Lars Bode, Alison Chu, Kara L Calkins, Elaine Y Hsiao | Nature Microbiology | 2025-06-13 | Abstract | |
| Isolation of Verrucosins A-E from a Marine sp. Reveals a Unifying Biosynthetic Hypothesis for Linear and Macrocyclic Polyketides. | Darren C Holland, Reiko Iizumi, Vikram V Shende, William Fenical | Journal Of Natural Products | 2025-06-13 | Abstract | |
| The oral microbiome and all-cause mortality in aUS population representative prospective cohort. | Emily Vogtmann, Yukiko Yano, Jianxin Shi, Yunhu Wan, Vaishnavi Purandare, Jody McLean, Shilan Li, Rob Knight, Lisa Kahle, Autumn G Hullings, Xing Hua, Barry I Graubard, Maura L Gillison, J Gregory Caporaso, Nicholas A Bokulich, Martin J Blaser, Neal D Freedman, Anil K Chaturvedi, Christian C Abnet | The Journal Of Infectious Diseases | 2025-06-13 | Abstract | |
| A widespread metabolic gene cluster family in metazoans. | Natalie E Grayson, Paul D Scesa, Malia L Moore, Jean-Baptiste Ledoux, Jessica Gomez-Garrido, Tyler Alioto, Todd P Michael, Immo Burkhardt, Eric W Schmidt, Bradley S Moore | Nature Chemical Biology | 2025-06-13 | Abstract | |
| Human milk oligosaccharides and Campylobacter jejuni and Campylobacter coli gastroenteritis risk in a Nicaraguan birth cohort. | Rebecca J Rubinstein, Roberto Herrera, Nadja A Vielot, Christian Toval, Lester Gutiérrez, Yaoska Reyes, Patricia Blandón, Natalie M Bowman, Esteban Chaves-Olarte, Filemón Bucardo, Robert S Sandler, Jessie Edwards, Lars Bode, Sylvia Becker-Dreps, Samuel Vilchez | The American Journal Of Clinical Nutrition | 2025-06-12 | Abstract | |
| Global siRNA screen identifies human host factors critical for SARS-CoV-2 replication and late stages of infection. | Xin Yin, Yuan Pu, Shuofeng Yuan, Lars Pache, Christopher Churas, Stuart Weston, Laura Riva, Lacy M Simons, William J Cisneros, Thomas Clausen, Grace Biddle, Simon Doss-Gollin, Meagan Deming, Paul D De Jesus, Ha Na Kim, Daniel Fuentes, John M Whitelock, Jeffrey D Esko, Megan S Lord, Ignacio Mena, Adolfo García-Sastre, Judd F Hultquist, Matthew B Frieman, Trey Ideker, Dexter Pratt, Laura Martin-Sancho, Sumit K Chanda | PLoS Biology | 2025-06-12 | Abstract | |
| The Extraordinary Benefit of Nature's Chemistry to Health, Society, and the Economy. | Bradley S Moore, David J Newman | Journal Of Natural Products | 2025-06-12 | Abstract | |
| Exploration of virulence and immune evasion functions of the candidate vaccine antigen SpyAD in the globally disseminated M1T1 group A strain. | Alexandra Stream, Samira Dahesh, Lamar Thomas, Nina J Gao, Elisabet Bjånes, Kalisa Kang, Truman Koh, Neeraj Kapoor, Victor Nizet | MBio | 2025-06-11 | Abstract | |
| Microbiota in Alcohol-Associated Organ Damage. | Aenne Harberts, Bernd Schnabl | The American Journal Of Pathology | 2025-06-11 | Abstract | |
| Protocol: the International Milk Composition (IMiC) Consortium - a harmonized secondary analysis of human milk from four studies. | Kelsey Fehr, Andrew Mertens, Chi-Hung Shu, Trenton Dailey-Chwalibóg, Liat Shenhav, Lindsay H Allen, Megan R Beggs, Lars Bode, Rishma Chooniedass, Mark D DeBoer, Lishi Deng, Camilo Espinosa, Daniela Hampel, April Jahual, Fyezah Jehan, Mohit Jain, Patrick Kolsteren, Puja Kawle, Kim A Lagerborg, Melissa B Manus, Samson Mataraso, Joann M McDermid, Ameer Muhammad, Payam Peymani, Martin Pham, Setareh Shahab-Ferdows, Yasir Shafiq, Vishak Subramoney, Daniel Sunko, Laeticia Celine Toe, Stuart E Turvey, Lei Xue, Natalie Rodriguez, Alan Hubbard, Nima Aghaeepour, Meghan B Azad | Frontiers In Nutrition | 2025-06-10 | Abstract | |
| Temporal single-cell sequencing analysis reveals that GPNMB-expressing macrophages potentiate muscle regeneration. | Yu-Fan Chen, Chien-Wei Lee, Yi-Shuan J Li, Wei-Ting Lin, Hsiao-Yun Chen, Yu-Chuan Chen, Chia-Hao Lin, Jennifer Hui-Chun Ho, Li-Fan Lu, Shu Chien, Oscar Kuang-Sheng Lee | Experimental & Molecular Medicine | 2025-06-09 | Abstract | |
| The microbiome diversifies long- to short-chain fatty acid-derived N-acyl lipids. | Helena Mannochio-Russo, Vincent Charron-Lamoureux, Martijn van Faassen, Santosh Lamichhane, Wilhan D Gonçalves Nunes, Victoria Deleray, Adriana V Ayala, Yuichiro Tanaka, Abubaker Patan, Kyle Vittali, Prajit Rajkumar, Yasin El Abiead, Haoqi Nina Zhao, Paulo Wender Portal Gomes, Ipsita Mohanty, Carlynda Lee, Aidan Sund, Meera Sharma, Yuanhao Liu, David Pattynama, Gregory T Walker, Grant J Norton, Lora Khatib, Mohammadsobhan S Andalibi, Crystal X Wang, Ronald J Ellis, David J Moore, Jennifer E Iudicello, Donald Franklin, Scott Letendre, Loryn Chin, Corinn Walker, Simone Renwick, Jasmine Zemlin, Michael J Meehan, Xinyang Song, Dennis Kasper, Zachary Burcham, Jane J Kim, Sejal Kadakia, Manuela Raffatellu, Lars Bode, Hiutung Chu, Karsten Zengler, Mingxun Wang, Dionicio Siegel, Rob Knight, Pieter C Dorrestein | Cell | 2025-06-09 | Abstract | |
| Real-world impact of COVID-19 vaccination, household exposure, and circulating SARS-CoV-2 variants on infection risk and symptom presentation in a U.S./Mexico border community. | Ariel Cohen, Breanna Reyes, Maria Linda Burola, Angel Lomeli, Arleth A Escoto, Linda Salgin, Borsika A Rabin, Nicole A Stadnick, Ilya Zaslavsky, Robert Tukey, Louise C Laurent, Marva Seifert | Frontiers In Public Health | 2025-06-09 | Abstract | |
| Tropical cyclones drive oxygen minimum zone shoaling and simultaneously alter organic matter production. | Brandon M Genco, Margot E White, Irina Koester, Sonia M Vargas, Jaclyn K Saunders, Daniel Petras, Mak A Saito, José Q García-Maldonado, Pieter C Dorrestein, Lihini I Aluwihare, J Michael Beman | Science Advances | 2025-06-06 | Abstract | |
| Dynamic control of Argonautes by a rapidly evolving immunological switch. | Chee Kiang Ewe, Guy Teichman, Shir Weiss, Maximilian M L Knott, Sarit Anava, Hila Gingold, Mario Bardan Sarmiento, Emily Troemel, Oded Rechavi | Current Biology : CB | 2025-06-05 | Abstract | |
| ChemEmbed: a deep learning framework for metabolite identification using enhanced MS/MS data and multidimensional molecular embeddings. | Muhammad Faizan-Khan, Roger Giné, Josep M Badia, Maribel Pérez-Ribera, Manuel Ruiz-Botella, Alexandra Junza, Jordi Capellades, Iván Pérez-López, Shipei Xing, Abubaker Patan, Laura Brugnara, Anna Novials, Joan-Marc Servitja, Maria Vinaixa, Pieter C Dorrestein, Marta Sales-Pardo, Roger Guimerà, Oscar Yanes | Briefings In Bioinformatics | 2025-06-04 | Abstract | |
| Panose prevents acute-on-chronic liver failure by reducing bacterial infection in mice. | Jiaxin Li, Shihao Xie, Meiling Chen, Changze Hong, Yuqi Chen, Fengyuan Lyu, Niexin Tang, Tianqi Chen, Lingyan Zhao, Weihao Zou, Hongjuan Peng, Jingna Bao, Peng Gu, Bernd Schnabl, Jinjun Chen, Peng Chen | The Journal Of Clinical Investigation | 2025-06-03 | Abstract | |
| Current Clinical Laboratory Challenges to Widespread Adoption of Phage Therapy in the United States. | Ahnika Kline, Ana G Cobián Güemes, Jennifer Yore, Chandrabali Ghose, Daria Van Tyne, Katrine Whiteson, David T Pride | Antibiotics (Basel, Switzerland) | 2025-05-29 | Abstract | |
| Identifying wastewater chemicals in coastal aerosols. | Adam Cooper, Lucia Cancelada, Ralph Riley Torres, Kathryn Belcher, Mallory Small, Pedro Belda-Ferre, Clare Morris, Brock Mitts, Julie Dinasquet, Rob Knight, Jonathan H Slade, Kimberly A Prather | Science Advances | 2025-05-28 | Abstract | |
| Characterizing Long COVID Symptoms During Early Childhood. | Rachel S Gross, Tanayott Thaweethai, Amy L Salisbury, Lawrence C Kleinman, Sindhu Mohandas, Kyung E Rhee, Jessica N Snowden, Kelan G Tantisira, David Warburton, John C Wood, Patricia A Kinser, Joshua D Milner, Erika B Rosenzweig, Katherine Irby, Valerie J Flaherman, Elizabeth W Karlson, Lori B Chibnik, Deepti B Pant, Aparna Krishnamoorthy, Richard Gallagher, Michelle F Lamendola-Essel, Denise C Hasson, Stuart D Katz, Shonna Yin, Benard P Dreyer, Frank Blancero, Megan Carmilani, K Coombs, Megan L Fitzgerald, Rebecca J Letts, Aimee K Peddie, Andrea S Foulkes, Melissa S Stockwell, , , Judy L Aschner, Andrew M Atz, Dithi Banerjee, Amanda Bogie, Hulya Bukulmez, Katharine Clouser, Lesley A Cottrell, Kelly Cowan, Viren A D'Sa, Allen Dozor, Amy J Elliott, E Vincent S Faustino, Alexander G Fiks, Sunanda Gaur, Maria L Gennaro, Stewart Gordon, Uzma N Hasan, Christina M Hester, Alexander Hogan, Daniel S Hsia, David C Kaelber, Jessica S Kosut, Sankaran Krishnan, Russell J McCulloh, Ian C Michelow, Sheila M Nolan, Carlos R Oliveira, Lynn M Olson, Wilson D Pace, Paul Palumbo, Hengameh Raissy, Andy Reyes, Judith L Ross, Juan C Salazar, Rangaraj Selvarangan, Cheryl R Stein, Michelle D Stevenson, Ronald J Teufel, Alan Werzberger, John M Westfall, Kathleen Zani, William T Zempsky, Emily Zimmerman, Marie-Abele C Bind, James Chan, Zoe Guan, Richard E Morse, Harrison T Reeder, Torri D Metz, Jane W Newburger, Dongngan T Truong | JAMA Pediatrics | 2025-05-27 | Abstract | |
| Leveraging pre-vaccination antibody titres across multiple influenza H3N2 variants to forecast the post-vaccination response. | Hannah Stacey, Michael A Carlock, James D Allen, Hannah B Hanley, Shane Crotty, Ted M Ross, Tal Einav | EBioMedicine | 2025-05-26 | Abstract | |
| Enabling pan-repository reanalysis for big data science of public metabolomics data. | Yasin El Abiead, Michael Strobel, Thomas Payne, Eoin Fahy, Claire O'Donovan, Shankar Subramamiam, Juan Antonio Vizcaíno, Ozgur Yurekten, Victoria Deleray, Simone Zuffa, Shipei Xing, Helena Mannochio-Russo, Ipsita Mohanty, Haoqi Nina Zhao, Andres M Caraballo-Rodriguez, Paulo Wender P Gomes, Nicole E Avalon, Trent R Northen, Benjamin P Bowen, Katherine B Louie, Pieter C Dorrestein, Mingxun Wang | Nature Communications | 2025-05-24 | Abstract | |
| Model of metabolism and gene expression predicts proteome allocation in Pseudomonas putida. | Juan D Tibocha-Bonilla, Vishant Gandhi, Chloe Lieng, Oriane Moyne, Rodrigo Santibáñez-Palominos, Karsten Zengler | NPJ Systems Biology And Applications | 2025-05-24 | Abstract | |
| Multiple steps of dynein activation by Lis1 visualized by cryo-EM. | Agnieszka A Kendrick, Kendrick H V Nguyen, Wen Ma, Eva P Karasmanis, Rommie E Amaro, Samara L Reck-Peterson, Andres E Leschziner | Nature Structural & Molecular Biology | 2025-05-23 | Abstract | |
| Population genomics of recovery and extinction in Hawaiian honeycreepers. | Christopher C Kyriazis, Madhvi Venkatraman, Bryce Masuda, Cynthia C Steiner, Loren Cassin-Sackett, Lisa H Crampton, Alison M Flanagan, Jeffrey T Foster, Marlys L Houck, Ann C Misuraca, Eben H Paxton, Jacqueline A Robinson, Robert C Fleischer, Oliver A Ryder, Michael G Campana, Aryn P Wilder | Current Biology : CB | 2025-05-22 | Abstract | |
| Targeted inhibition of pathobiont virulence factor mitigates alcohol-associated liver disease. | Yongqiang Yang, Yi Duan, Sonja Lang, Marcos F Fondevila, David Schöler, Aenne Harberts, Noemí Cabré, Sainan Chen, Yan Shao, Kevin Vervier, Yukiko Miyamoto, Xinlian Zhang, Huikuan Chu, Ling Yang, Chen Tan, Lars Eckmann, Francisco Bosques-Padilla, Elizabeth C Verna, Juan G Abraldes, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie L Shawcross, Alexandre Louvet, Michael R Lucey, Philippe Mathurin, Guadalupe Garcia-Tsao, Ramon Bataller, Peter Stärkel, Trevor D Lawley, Bernd Schnabl | Cell Host & Microbe | 2025-05-21 | Abstract | |
| Wildfire-Driven Changes in Terrestrial Subsidies Shift Freshwater Microbial and Zooplankton Communities to New Compositional States. | Margaret Y Demmel, Christopher B Wall, Cody J Spiegel, Natalia Erazo, Evelyn M Diaz, Madeline G Perreault, Elisabet Perez-Coronel, Sara L Jackrel, Jeff S Bowman, Jonathan B Shurin | Molecular Ecology | 2025-05-20 | Abstract | |
| Genomic description of sp. nov., a bacterium collected from the International Space Station that exhibits unique antimicrobial-resistant and virulent phenotype. | Megan S Hill, Vanessa R Minnis, Anna C Simpson, Mariana C Salas Garcia, Davis Bone, Ryan K Chung, Ella Rushton, Asif Hameed, Punchappady D Rekha, Jack A Gilbert, Kasthuri Venkateswaran | MSystems | 2025-05-20 | Abstract | |
| Host Evolution Improves Genetic Circuit Function in Complex Growth Environments. | Joanna T Zhang, Andrew Lezia, Philip Emmanuele, Muyao Wu, Elina C Olson, Aayush Somani, Adam M Feist, Jeff Hasty | ACS Synthetic Biology | 2025-05-20 | Abstract | |
| Discovery of acylsulfenic acid-featuring natural product sulfenicin and characterization of its biosynthesis. | Dan Xue, Hongbin Zou, Yanping Qiu, Wei Lv, Michael D Madden, Mingming Xu, Xiaoying Lian, Conor Pulliam, Ethan A Older, Lukuan Hou, Andrew Campbell, Tristan de Rond, Takayoshi Awakawa, Chunhua Yuan, Bradley S Moore, Jie Li | Nature Chemistry | 2025-05-20 | Abstract | |
| Polymicrobial urine cultures: reconciling contamination with the urobiome while recognizing the pathogens. | Robert B Moreland, Linda Brubaker, Alan J Wolfe | Frontiers In Cellular And Infection Microbiology | 2025-05-19 | Abstract | |
| Gut microbiome compositional and functional features associate with Alzheimer's disease pathology. | Jea Woo Kang, Lora A Khatib, Margo B Heston, Amanda H Dilmore, Jennifer S Labus, Yuetiva Deming, Leyla Schimmel, Colette Blach, Daniel McDonald, Antonio Gonzalez, MacKenzie Bryant, Tyler K Ulland, Sterling C Johnson, Sanjay Asthana, Cynthia M Carlsson, Nathaniel A Chin, Kaj Blennow, Henrik Zetterberg, Federico E Rey, , Rima Kaddurah-Daouk, Rob Knight, Barbara B Bendlin | Alzheimer's & Dementia : The Journal Of The Alzheimer's Association | 2025-05-19 | Abstract | |
| Evolution-guided tolerance engineering of Pseudomonas putida KT2440 for production of the aviation fuel precursor isoprenol. | Hyun Gyu Lim, Aparajitha Srinivasan, Russel Menchavez, Ian S Yunus, Myung Hyun Noh, Megan White, Yan Chen, Jennifer W Gin, Bernhard O Palsson, Taek Soon Lee, Christopher J Petzold, Thomas Eng, Aindrila Mukhopadhyay, Adam M Feist | Metabolic Engineering | 2025-05-19 | Abstract | |
| Fecal carriage of multidrug-resistant organisms increases the risk of hepatic encephalopathy in patients with cirrhosis: insights from gut microbiota and metabolite features. | Pei-Shan Wu, Pei-Chang Lee, Tien-En Chang, Yun-Cheng Hsieh, Chi-Wei Huang, Chao-Hsiung Lin, Yi-Long Huang, Yi-Tsung Lin, Teh-Ia Huo, Bernd Schnabl, Kuei-Chuan Lee, Ming-Chih Hou | Gut Pathogens | 2025-05-16 | Abstract | |
| Interaction Between Human Gut Microbiota and Artemisinin: A Multi-Omics Perspective. | Paulo Wender Portal Gomes, Helena Mannochio-Russo, Stanislav N Lablokov, Dmitry A Rodionov, Heejung Yang, Pieter C Dorrestein, Scott N Peterson, Christine Tara Peterson | ACS Omega | 2025-05-15 | Abstract | |
| Phage Therapy for Urinary Tract Infections: Progress and Challenges Ahead. | Chase J Morgan, Haley Atkins, Alan J Wolfe, Linda Brubaker, Saima Aslam, Catherine Putonti, Michael B Doud, Lindsey A Burnett | International Urogynecology Journal | 2025-05-13 | Abstract | |
| Genome-wide analyses identify 30 loci associated with obsessive-compulsive disorder. | Nora I Strom, Zachary F Gerring, Marco Galimberti, Dongmei Yu, Matthew W Halvorsen, Abdel Abdellaoui, Cristina Rodriguez-Fontenla, Julia M Sealock, Tim Bigdeli, Jonathan R Coleman, Behrang Mahjani, Jackson G Thorp, Katharina Bey, Christie L Burton, Jurjen J Luykx, Gwyneth Zai, Silvia Alemany, Christine Andre, Kathleen D Askland, Julia Bäckman, Nerisa Banaj, Cristina Barlassina, Judith Becker Nissen, O Joseph Bienvenu, Donald Black, Michael H Bloch, Sigrid Børte, Rosa Bosch, Michael Breen, Brian P Brennan, Helena Brentani, Joseph D Buxbaum, Jonas Bybjerg-Grauholm, Enda M Byrne, Judit Cabana-Dominguez, Beatriz Camarena, Adrian Camarena, Carolina Cappi, Angel Carracedo, Miguel Casas, Maria Cristina Cavallini, Valentina Ciullo, Edwin H Cook, Jesse Crosby, Bernadette A Cullen, Elles J De Schipper, Richard Delorme, Srdjan Djurovic, Jason A Elias, Xavier Estivill, Martha J Falkenstein, Bengt T Fundin, Lauryn Garner, Christina Gironda, Fernando S Goes, Marco A Grados, Jakob Grove, Wei Guo, Jan Haavik, Kristen Hagen, Kelly Harrington, Alexandra Havdahl, Kira D Höffler, Ana G Hounie, Donald Hucks, Christina Hultman, Magdalena Janecka, Eric Jenike, Elinor K Karlsson, Kara Kelley, Julia Klawohn, Janice E Krasnow, Kristi Krebs, Christoph Lange, Nuria Lanzagorta, Daniel Levey, Kerstin Lindblad-Toh, Fabio Macciardi, Brion Maher, Brittany Mathes, Evonne McArthur, Nathaniel McGregor, Nicole C McLaughlin, Sandra Meier, Euripedes C Miguel, Maureen Mulhern, Paul S Nestadt, Erika L Nurmi, Kevin S O'Connell, Lisa Osiecki, Olga Therese Ousdal, Teemu Palviainen, Nancy L Pedersen, Fabrizio Piras, Federica Piras, Sriramya Potluri, Raquel Rabionet, Alfredo Ramirez, Scott Rauch, Abraham Reichenberg, Mark A Riddle, Stephan Ripke, Maria C Rosário, Aline S Sampaio, Miriam A Schiele, Anne Heidi Skogholt, Laura G Sloofman, Jan Smit, María Soler Artigas, Laurent F Thomas, Eric Tifft, Homero Vallada, Nathanial van Kirk, Jeremy Veenstra-VanderWeele, Nienke N Vulink, Christopher P Walker, Ying Wang, Jens R Wendland, Bendik S Winsvold, Yin Yao, Hang Zhou, , , Arpana Agrawal, Pino Alonso, Götz Berberich, Kathleen K Bucholz, Cynthia M Bulik, Danielle Cath, Damiaan Denys, Valsamma Eapen, Howard Edenberg, Peter Falkai, Thomas V Fernandez, Abby J Fyer, J M Gaziano, Dan A Geller, Hans J Grabe, Benjamin D Greenberg, Gregory L Hanna, Ian B Hickie, David M Hougaard, Norbert Kathmann, James Kennedy, Dongbing Lai, Mikael Landén, Stéphanie Le Hellard, Marion Leboyer, Christine Lochner, James T McCracken, Sarah E Medland, Preben B Mortensen, Benjamin M Neale, Humberto Nicolini, Merete Nordentoft, Michele Pato, Carlos Pato, David L Pauls, John Piacentini, Christopher Pittenger, Danielle Posthuma, Josep Antoni Ramos-Quiroga, Steven A Rasmussen, Margaret A Richter, David R Rosenberg, Stephan Ruhrmann, Jack F Samuels, Sven Sandin, Paul Sandor, Gianfranco Spalletta, Dan J Stein, S Evelyn Stewart, Eric A Storch, Barbara E Stranger, Maurizio Turiel, Thomas Werge, Ole A Andreassen, Anders D Børglum, Susanne Walitza, Kristian Hveem, Bjarne K Hansen, Christian Rück, Nicholas G Martin, Lili Milani, Ole Mors, Ted Reichborn-Kjennerud, Marta Ribasés, Gerd Kvale, David Mataix-Cols, Katharina Domschke, Edna Grünblatt, Michael Wagner, John-Anker Zwart, Gerome Breen, Gerald Nestadt, Jaakko Kaprio, Paul D Arnold, Dorothy E Grice, James A Knowles, Helga Ask, Karin J Verweij, Lea K Davis, Dirk J Smit, James J Crowley, Jeremiah M Scharf, Murray B Stein, Joel Gelernter, Carol A Mathews, Eske M Derks, Manuel Mattheisen | Nature Genetics | 2025-05-13 | Abstract | |
| Genomic map of the functionally extinct northern white rhinoceros (). | Gaojianyong Wang, Marisa L Korody, Björn Brändl, Camilo Jose Hernandez-Toro, Christian Rohrandt, Karl Hong, Andy Wing Chun Pang, Joyce Lee, Giovanna Migliorelli, Mario Stanke, Sarah M Ford, Iris Pollmann, Marlys L Houck, Harris A Lewin, Teri L Lear, Oliver A Ryder, Alexander Meissner, Jeanne F Loring, Franz-Josef Müller | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2025-05-13 | Abstract | |
| Ethylenediaminetetraacetic Acid Enhances Vancomycin and Reactive Oxygen Species-Mediated Killing of Vancomycin-Intermediate . | Joshua Olson, Anuj K Khetarpal, Allen Jankeel, Arianna Lorenzana, Victor Nizet, George Sakoulas, Erlinda R Ulloa | Open Forum Infectious Diseases | 2025-05-13 | Abstract | |
| Phylogeographic and genetic network assessment of COVID-19 mitigation protocols on SARS-CoV-2 transmission in university campus residences. | Joel O Wertheim, Tetyana I Vasylyeva, Robert J Wood, Kalen Cantrell, Soraya Piña Contreras, Aryeh Feldheim, Ravi Goyal, Jennifer L Havens, Rob Knight, Louise C Laurent, Niema Moshiri, Robert Neuhard, Shashank Sathe, Alysson Satterlund, Angela Scioscia, Angela Y Song, , Robert T Schooley, Cheryl M Anderson, Natasha K Martin | EBioMedicine | 2025-05-09 | Abstract | |
| Human milk oligosaccharide metabolism and antibiotic resistance in early gut colonizers: insights from bifidobacteria and lactobacilli in the maternal-infant microbiome. | Anna Samarra, Simone Renwick, Aleksandr A Arzamasov, Dmitry A Rodionov, Kennedy Spann, Raul Cabrera-Rubio, Antia Acuna-Gonzalez, Cecilia Martínez-Costa, Lindsay Hall, Nicola Segata, Andrei L Osterman, Lars Bode, MCarmen Collado | Gut Microbes | 2025-05-09 | Abstract | |
| Non-Alcoholic Beer Influences Glucose and Lipid Metabolism and Changes Body Composition in Healthy, Young, Male Adults. | Henriette Kreimeyer, Svenja Sydor, Lara Buchholz, Cagatay Toskal, Mustafa Özcürümez, Bernd Schnabl, Wing-Kin Syn, Jan-Peter Sowa, Paul Manka, Ali Canbay | Nutrients | 2025-05-09 | Abstract | |
| Predictors of cognitive performance in Zambian adults with clade C HIV-1: The roles of antiretroviral therapy (ART)-induced CD4+ T-cell increase and pulmonary tuberculosis. | Knut A Hestad, J Anitha Menon, Mary Shilalukey Ngoma, Lumbuka Kaunda, Norma Kabuba, Ravi Paul, Scott Letendre, Donald R Franklin, Robert K Heaton | Neuropsychology | 2025-05-08 | Abstract | |
| Spatial and multiomics analysis of human and mouse lung adenocarcinoma precursors reveals TIM-3 as a putative target for precancer interception. | Bo Zhu, Pingjun Chen, Muhammad Aminu, Jian-Rong Li, Junya Fujimoto, Yanhua Tian, Lingzhi Hong, Hong Chen, Xin Hu, Chenyang Li, Natalie Vokes, Andre L Moreira, Don L Gibbons, Luisa M Solis Soto, Edwin Roger Parra Cuentas, Ou Shi, Songhui Diao, Jie Ye, Frank R Rojas, Eduardo Vilar, Anirban Maitra, Ken Chen, Nicolas Navin, Monique Nilsson, Beibei Huang, Simon Heeke, Jianhua Zhang, Cara L Haymaker, Vamsidhar Velcheti, Daniel H Sterman, Veena Kochat, William I Padron, Ludmil B Alexandrov, Zhubo Wei, Xiuning Le, Linghua Wang, Junya Fukuoka, J Jack Lee, Ignacio I Wistuba, Harvey I Pass, Mark Davis, Samir Hanash, Chao Cheng, Steven Dubinett, Avrum Spira, Kunal Rai, Scott M Lippman, P Andrew Futreal, John V Heymach, Alexandre Reuben, Jia Wu, Jianjun Zhang | Cancer Cell | 2025-05-08 | Abstract | |
| Nasal vaccines for respiratory infections. | Hiroshi Kiyono, Peter B Ernst | Nature | 2025-05-07 | Abstract | |
| Poor sleep and hepatic steatosis contribute to poorer quality of life in people with human immunodeficiency virus. | Ana N Hyatt, Sai K Kuchana, Eduardo Vilar-Gomez, Richard K Sterling, Susanna Naggie, Sonya L Heath, Jennifer C Price, Laura A Wilson, Holly Crandall, Samer Gawrieh, Naga Chalasani, Rohit Loomba, Mark S Sulkowski, Archita P Desai, Jordan E Lake | World Journal Of Gastroenterology | 2025-05-06 | Abstract | |
| Wastewater-integrated pathogen surveillance dashboards enable real-time, transparent, and interpretable public health risk assessment and dissemination. | Nosihle S Msomi, Joshua I Levy, Nathaniel L Matteson, Nkosenhle Ndlovu, Phindile Ntuli, Adam Baer, Dylan Pilz, Victor Mabasa, Sipho Gwala, Natasha Singh, Kathleen Subramoney, Emmanuel Phalane, Mokgaetji Macheke, Mantshali Motloung, Thabo Mangena, Lethabo Monametsi, Lebohang Rabotapi, Sibonginkosi Maposa, Amanda Birmingham, Mark Zeller, Smruthi Karthikeyan, Peter De Hoff, Simon Harris, Rob Knight, Louise C Laurent, Kristian G Andersen, Kerrigan McCarthy, Mukhlid Yousif | PLOS Global Public Health | 2025-05-05 | Abstract | |
| Two years of outdoor cultivation in alternate climates produces little divergence in the productivity of Nannochloropsis. | Ahlem Jebali, Harmanpreet Kaur, Heather Martinez, Stephanie Getto, Cheryl Gleasner, Isidora Echenique-Subiabre, Julia Gerber, F F Omar Holguin, Jakob Nalley, Charles J O'Kelly, Jonathan B Shurin, Shawn R Starkenburg, Alina A Corcoran | The Science Of The Total Environment | 2025-05-05 | Abstract | |
| All-atom virus simulations to tackle airborne disease. | Abigail C Dommer, Nicholas A Wauer, Siewert J Marrink, Rommie E Amaro | Current Opinion In Structural Biology | 2025-05-03 | Abstract | |
| A responsive living material prepared by diffusion reveals extracellular enzyme activity of cyanobacteria. | Lisa Tang, Nathan T Soulier, Rebecca Wheeler, Jonathan K Pokorski, James W Golden, Susan S Golden, Jinhye Bae | Proceedings Of The National Academy Of Sciences Of The United States Of America | 2025-05-01 | Abstract | |
| Gut microbiota-targeted therapies in pediatric chronic kidney disease: gaps and opportunities. | Arpana Iyengar, Balamurugan Ramadass, Shruthi Venkatesh, Robert H Mak | Pediatric Nephrology (Berlin, Germany) | 2025-05-01 | Abstract | |
| Oral Microbiome Profile of the US Population. | Anil K Chaturvedi, Emily Vogtmann, Jianxin Shi, Yukiko Yano, Martin J Blaser, Nicholas A Bokulich, J Gregory Caporaso, Maura L Gillison, Barry I Graubard, Xing Hua, Autumn G Hullings, Lisa Kahle, Rob Knight, Shilan Li, Jody McLean, Vaishnavi Purandare, Yunhu Wan, Neal D Freedman, Christian C Abnet | JAMA Network Open | 2025-05-01 | Abstract | |
| Interpreting roles of mutations associated with the emergence of USA300 strains using transcriptional regulatory network reconstruction. | Saugat Poudel, Jason Hyun, Ying Hefner, Jon Monk, Victor Nizet, Bernhard O Palsson | ELife | 2025-04-30 | Abstract | |
| gen. nov., sp. nov., a novel moderately halophilic, thermotolerant, bacterium isolated from a brine lake. | Luke A Fisher, Saloni R Dangre, Arthur Odenheimer, Nirav Patel, Peter T Doran, Jeff S Bowman, Britney E Schmidt, Douglas H Bartlett | International Journal Of Systematic And Evolutionary Microbiology | 2025-04-30 | Abstract | |
| A live bacteria enzyme assay for identification of human disease mutations and drug screening. | Donghui Choe, Bernhard O Palsson | Nature Biomedical Engineering | 2025-04-30 | Abstract | |
| Independent and combined adverse effects of neurocognitive impairment and depression on everyday functioning and quality of life in people with HIV. | Crystal X Wang, Victoria O Chentsova, Maximo R Prescott, Anya Umlauf, David J Moore, Ronald J Ellis, Mariana Cherner, Murray B Stein, Scott L Letendre, Robert K Heaton, Jennifer E Iudicello | Journal Of The International Neuropsychological Society : JINS | 2025-04-29 | Abstract | |
| Viral metagenomics of Okavango Delta water pans reveal novel insights into wildlife disease potential. | Emilie J Skoog, Kenosi Kebabonye, Benjamin Klempay, Mangaliso Gondwe, Kaelo Makati, Nlingisisi Babayani, Mosimanegape Jongman, Jeff Bowman, Lihini Aluwihare | IMetaOmics | 2025-04-29 | Abstract | |
| The role of artificial intelligence in microbial sciences to support climate resilience. | Jack A Gilbert, Karsten Zengler | Nature Reviews. Microbiology | 2025-04-25 | Abstract | |
| Vaccine protection against COVID-19-related mortality in patients with schizophrenia: a retrospective cohort study. | Fabrício E S Oliveira, Hercílio Martelli-Júnior, Enrico A Colosimo, Ana Cristina Simões E Silva, Cristiane S Dias, Lilian O Diniz, Clara C Pinhati, Stella C Galante, Fernanda N Duelis, Laura E Carvalho, Daniella R B Martell, Robert H Mak, Maria Christina L Oliveira, Eduardo A Oliveira | Revista Brasileira De Psiquiatria (Sao Paulo, Brazil : 1999) | 2025-04-25 | Abstract | |
| Mind over microbiota: neurons call the shots in the gut. | Wuling Zhong, Karen Wang, Amir Zarrinpar | Nature Metabolism | 2025-04-22 | Abstract | |
| Aspartate Is A Determinant of TNF-α Biogenesis in Sub-Saharan Africa: Insight Into the Pathogenesis of Noncommunicable Diseases. | Stephen W Bickler, David M Cauvi, Jack A Gilbert, Romeo C Ignacio, Emmanuel A Ameh, Robert T Schooley, Emilia V Noormahomed | FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology | 2025-04-22 | Abstract | |
| Pharmacokinetics and Safety of Ceftazidime-Avibactam in Neonates and Young Infants: a Phase 2a, Multicenter Prospective Trial. | John Bradley, Emmanuel Roilides, Margaret Tawadrous, Jean Li Yan, Elena Soto, Gregory G Stone, Shweta Kamat, Paurus Irani, Richard England | Journal Of The Pediatric Infectious Diseases Society | 2025-04-19 | Abstract | |
| The Urinary, Vaginal, and Perineal Microbiome: Commonalities and Differences. | Anisa Nasse, Melline Fontes Noronha, Linda Brubaker, Alan J Wolfe | International Urogynecology Journal | 2025-04-17 | Abstract | |
| Social and environmental predictors of gut microbiome age in wild baboons. | Mauna R Dasari, Kimberly E Roche, David Jansen, Jordan Anderson, Susan C Alberts, Jenny Tung, Jack A Gilbert, Ran Blekhman, Sayan Mukherjee, Elizabeth A Archie | ELife | 2025-04-17 | Abstract | |
| Liposomal Nanotraps Neutralize Toxins to Enhance Macrophage Viability and Antibacterial Capacity. | Hervé Besançon, Margherita Polidori, Andrea Hostettler, Victor Nizet, Anna Oevermann, Eduard Babiychuk | Infectious Microbes & Diseases | 2025-04-17 | Abstract | |
| Soil depth determines the microbial communities in fields within a uniform regional environment. | Emily R Murray, Jeremiah J Minich, Jocelyn Saxton, Marie de Gracia, Nathaniel Eck, Nicholas Allsing, Justine Kitony, Kavi Patel-Jhawar, Eric E Allen, Todd P Michael, Nadia Shakoor | Microbiology Spectrum | 2025-04-16 | Abstract | |
| Insertion sequence-mediated phage resistance contributes to attenuated colonization of cytolytic variants in the gut. | Jumpei Fujiki, Tomohiro Nakamura, Henriette Kreimeyer, Cristina Llorente, Derrick E Fouts, Bernd Schnabl | Microbiology Spectrum | 2025-04-15 | Abstract | |
| Targeting the Gut Microbiota's Role in Host Energy Absorption With Precision Nutrition Interventions for the Prevention and Treatment of Obesity. | Karen D Corbin, Daria Igudesman, Steven R Smith, Karsten Zengler, Rosa Krajmalnik-Brown | Nutrition Reviews | 2025-04-15 | Abstract | |
| Rapid identification of key antibiotic resistance genes in using high-resolution genome-scale CRISPRi screening. | Donghui Choe, Eunju Lee, Kangsan Kim, Soonkyu Hwang, Ki Jun Jeong, Bernhard O Palsson, Byung-Kwan Cho, Suhyung Cho | IScience | 2025-04-15 | Abstract | |
| Net rate of lateral gene transfer in marine prokaryoplankton. | Ramunas Stepanauskas, Julia M Brown, Shayesteh Arasti, Uyen Mai, Gregory Gavelis, Maria Pachiadaki, Oliver Bezuidt, Jacob H Munson-McGee, Tianyi Chang, Steven J Biller, Paul M Berube, Siavash Mirarab | The ISME Journal | 2025-04-14 | Abstract | |
| Sex differences in adenosine deaminase activity associate with disparities in SARS-CoV-2 innate immunity. | Priyanka Saminathan, Ian T Mathews, Ahmad Alimadadi, Kai Fung, Kiyokazu Kakugawa, Leo A B Joosten, Mihai G Netea, Mohit Jain, Susan Cheng, Catherine C Hedrick, Sonia Sharma | IScience | 2025-04-14 | Abstract | |
| Microbiologist in the Clinic: Antibiotic Dependent in her 30 s. | Linda Brubaker, Harry Horsley, Rajvinder Khasriya, Alan J Wolfe | International Urogynecology Journal | 2025-04-12 | Abstract | |
| Associations of alcohol with the human gut microbiome and prospective health outcomes in the FINRISK 2002 cohort. | Kari Koponen, Daniel McDonald, Pekka Jousilahti, Guillaume Meric, Michael Inouye, Leo Lahti, Teemu Niiranen, Satu Männistö, Aki Havulinna, Rob Knight, Veikko Salomaa | European Journal Of Nutrition | 2025-04-11 | Abstract | |
| Psychological stress increases skin infection through the action of TGFβ to suppress immune-acting fibroblasts. | Hung Chan, Fengwu Li, Tatsuya Dokoshi, Kellen J Cavagnero, Qing Li, Yang Chen, Carlos Aguilera, Teruaki Nakatsuji, Edward Liu, Aaryan Indra, Daping Yang, Ottaviani Valentina, Tomofumi Numata, Brittany Crown, Henry Li, Kevin J Williams, Isaac M Chiu, Steven J Bensinger, WanJun Chen, Richard L Gallo | Science Immunology | 2025-04-11 | Abstract | |
| Clinical translation of microbiome research. | Jack A Gilbert, Meghan B Azad, Fredrik Bäckhed, Martin J Blaser, Mariana Byndloss, Charles Y Chiu, Hiutung Chu, Lara R Dugas, Eran Elinav, Sean M Gibbons, Katharine E Gilbert, Matthew R Henn, Suzanne L Ishaq, Ruth E Ley, Susan V Lynch, Eran Segal, Tim D Spector, Philip Strandwitz, Jotham Suez, Carolina Tropini, Katrine Whiteson, Rob Knight | Nature Medicine | 2025-04-11 | Abstract | |
| Allosteric modulation by the fatty acid site in the glycosylated SARS-CoV-2 spike. | A Sofia F Oliveira, Fiona L Kearns, Mia A Rosenfeld, Lorenzo Casalino, Lorenzo Tulli, Imre Berger, Christiane Schaffitzel, Andrew D Davidson, Rommie E Amaro, Adrian J Mulholland | ELife | 2025-04-10 | Abstract | |
| Complete sequencing of ape genomes. | DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A Logsdon, Steven J Solar, Dmitry Antipov, Brandon D Pickett, Yana Safonova, Francesco Montinaro, Yanting Luo, Joanna Malukiewicz, Jessica M Storer, Jiadong Lin, Abigail N Sequeira, Riley J Mangan, Glenn Hickey, Graciela Monfort Anez, Parithi Balachandran, Anton Bankevich, Christine R Beck, Arjun Biddanda, Matthew Borchers, Gerard G Bouffard, Emry Brannan, Shelise Y Brooks, Lucia Carbone, Laura Carrel, Agnes P Chan, Juyun Crawford, Mark Diekhans, Eric Engelbrecht, Cedric Feschotte, Giulio Formenti, Gage H Garcia, Luciana de Gennaro, David Gilbert, Richard E Green, Andrea Guarracino, Ishaan Gupta, Diana Haddad, Junmin Han, Robert S Harris, Gabrielle A Hartley, William T Harvey, Michael Hiller, Kendra Hoekzema, Marlys L Houck, Hyeonsoo Jeong, Kaivan Kamali, Manolis Kellis, Bryce Kille, Chul Lee, Youngho Lee, William Lees, Alexandra P Lewis, Qiuhui Li, Mark Loftus, Yong Hwee Eddie Loh, Hailey Loucks, Jian Ma, Yafei Mao, Juan F I Martinez, Patrick Masterson, Rajiv C McCoy, Barbara McGrath, Sean McKinney, Britta S Meyer, Karen H Miga, Saswat K Mohanty, Katherine M Munson, Karol Pal, Matt Pennell, Pavel A Pevzner, David Porubsky, Tamara Potapova, Francisca R Ringeling, Joana L Rocha, Oliver A Ryder, Samuel Sacco, Swati Saha, Takayo Sasaki, Michael C Schatz, Nicholas J Schork, Cole Shanks, Linnéa Smeds, Dongmin R Son, Cynthia Steiner, Alexander P Sweeten, Michael G Tassia, Françoise Thibaud-Nissen, Edmundo Torres-González, Mihir Trivedi, Wenjie Wei, Julie Wertz, Muyu Yang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhang, Sarah A Zhao, Yixin Zhu, Erich D Jarvis, Jennifer L Gerton, Iker Rivas-González, Benedict Paten, Zachary A Szpiech, Christian D Huber, Tobias L Lenz, Miriam K Konkel, Soojin V Yi, Stefan Canzar, Corey T Watson, Peter H Sudmant, Erin Molloy, Erik Garrison, Craig B Lowe, Mario Ventura, Rachel J O'Neill, Sergey Koren, Kateryna D Makova, Adam M Phillippy, Evan E Eichler | Nature | 2025-04-09 | Abstract | |
| Conserved chromatin regulators control the transcriptional immune response to intracellular pathogens in Caenorhabditis elegans. | Eillen Tecle, Paaramitha Warushavithana, Samuel Li, Michael J Blanchard, Crystal B Chhan, Theresa Bui, Ryan S Underwood, Malina A Bakowski, Emily R Troemel, Vladimir Lažetić | PLoS Genetics | 2025-04-07 | Abstract | |
| Suspended detrital particles support a distinct microbial ecosystem in Palmer Canyon, Antarctica, a coastal biological hotspot. | Elizabeth Connors, Katherine L Gallagher, Avishek Dutta, Matthew Oliver, Jeff S Bowman | Polar Biology | 2025-04-07 | Abstract | |
| Gut Microbiome as a Risk Factor for Future CKD. | Tapio Hellman, Li-Fang Yeo, Joonatan Palmu, Aki Havulinna, Pekka Jousilahti, Ville Laitinen, Katariina Pärnänen, Veikko Salomaa, Leo Lahti, Rob Knight, Teemu Niiranen | Kidney International Reports | 2025-04-07 | Abstract | |
| Unlocking the potential of the gut microbiome in liver regeneration: Benefits and mechanistic insights. | Wenchao Wei, Bernd Schnabl | Acta Pharmaceutica Sinica. B | 2025-04-05 | Abstract | |
| Extracellular respiration is a latent energy metabolism in Escherichia coli. | Biki Bapi Kundu, Jayanth Krishnan, Richard Szubin, Arjun Patel, Bernhard O Palsson, Daniel C Zielinski, Caroline M Ajo-Franklin | Cell | 2025-04-04 | Abstract | |
| Examining the potential prebiotic effect of almonds. | Maha Tahiri, Jack A Gilbert | Journal Of Applied Microbiology | 2025-03-28 | Abstract | |
| Anesthetic choice impacts mortality and bacterial clearance in a murine experimental pneumonia model. | Hunter Gage, Shawn M Hannah, Bryan Hancock, Ingrid Cornax, Jason Munguia, Joshua Olson, Elisabet Bjånes, Raymond Zurich, Alexandria Hoffman, Fatemeh Askarian, Khang Tong, Lin Liu, Victor Nizet, Angela Meier | BMC Infectious Diseases | 2025-03-27 | Abstract | |
| Expression of Fluorescence Reporters and Natural Products in Native Gut . | Dake Liu, Phuong M Ton, David Zong, Amir Zarrinpar, Yousong Ding | ACS Synthetic Biology | 2025-03-26 | Abstract | |
| Implications of Cognitive Impairment on Antihypertensive Medication Use in HIV. | Azin Tavasoli, Bin Tang, Mohammadsobhan S Andalibi, Donald R Franklin, Scott L Letendre, Robert K Heaton, Ronald J Ellis | Viruses | 2025-03-26 | Abstract | |
| Inhibition of human-HPV hybrid ecDNA enhancers reduces oncogene expression and tumor growth in oropharyngeal cancer. | Takuya Nakagawa, Jens Luebeck, Kaiyuan Zhu, Joshua T Lange, Roman Sasik, Chad Phillips, Sayed Sadat, Sara Javadzadeh, Qian Yang, Abdula Monther, Santiago Fassardi, Allen Wang, Kersi Pestonjamasp, Brin Rosenthal, Kathleen M Fisch, Paul Mischel, Vineet Bafna, Joseph A Califano | Nature Communications | 2025-03-26 | Abstract | |
| The P-loop NTPase RUVBL2 is a conserved clock component across eukaryotes. | Meimei Liao, Yanqin Liu, Zhancong Xu, Mingxu Fang, Ziqing Yu, Yufan Cui, Zhengda Sun, Ran Huo, Jieyu Yang, Fusheng Huang, Mingming Liu, Qin Zhou, Xiaocui Song, Hui Han, She Chen, Xiaodong Xu, Ximing Qin, Qun He, Dapeng Ju, Tao Wang, Nirav Thakkar, Paul E Hardin, Susan S Golden, Eric Erquan Zhang | Nature | 2025-03-26 | Abstract | |
| Diverse priming outcomes under conditions of very rare precursor B cells. | Patrick J Madden, Ester Marina-Zárate, Kristen A Rodrigues, Jon M Steichen, Monolina Shil, Kaiyuan Ni, Katarzyna Kaczmarek Michaels, Laura Maiorino, Amit A Upadhyay, Swati Saha, Arpan Pradhan, Oleksandr Kalyuzhiny, Alessia Liguori, Paul G Lopez, Ivy Phung, Claudia Flynn, Amelia Zhou, Mariane B Melo, Ashley Lemnios, Nicole Phelps, Erik Georgeson, Nushin Alavi, Michael Kubitz, Danny Lu, Saman Eskandarzadeh, Amanda Metz, Oscar L Rodriguez, Kaitlyn Shields, Steven Schultze, Melissa L Smith, Brandon S Healy, Deuk Lim, Vanessa R Lewis, Elana Ben-Akiva, William Pinney, Justin Gregory, Shuhao Xiao, Diane G Carnathan, Sudhir Pai Kasturi, Corey T Watson, Steven E Bosinger, Guido Silvestri, William R Schief, Darrell J Irvine, Shane Crotty | Immunity | 2025-03-25 | Abstract | |
| Sequential membrane- and protein-bound organelles compartmentalize genomes during phage infection. | Emily G Armbruster, Phoolwanti Rani, Jina Lee, Niklas Klusch, Joshua Hutchings, Lizbeth Y Hoffman, Hannah Buschkaemper, Eray Enustun, Benjamin A Adler, Koe Inlow, Arica R VanderWal, Madelynn Y Hoffman, Daksh Daksh, Ann Aindow, Amar Deep, Zaida K Rodriguez, Chase J Morgan, Majid Ghassemian, Thomas G Laughlin, Emeric Charles, Brady F Cress, David F Savage, Jennifer A Doudna, Kit Pogliano, Kevin D Corbett, Elizabeth Villa, Joe Pogliano | Cell Host & Microbe | 2025-03-25 | Abstract | |
| Implementation of a seamless phase 2/3 study design in the setting of an emergent infectious disease pandemic: Lessons learned from the ACTIV-2 platform COVID-19 treatment trial. | Mark J Giganti, Kara W Chew, Carlee Moser, Joseph J Eron, Mauricio Pinilla, Jonathan Z Li, Justin Ritz, Arzhang Cyrus Javan, David Alain Wohl, Eric S Daar, Judith S Currier, Davey M Smith, Michael D Hughes, | Contemporary Clinical Trials | 2025-03-25 | Abstract | |
| Protocol for the development, assembly, and testing of a synthetic skin microbial community. | Deepan Thiruppathy, Asama Lekbua, Joanna Coker, Yuhan Weng, Fatemeh Askarian, Armin Kousha, Clarisse Marotz, Amber Hauw, Megan Tjuanta, Victor Nizet, Karsten Zengler | STAR Protocols | 2025-03-24 | Abstract |
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