Publications

These are the LAST 12 MONTHS of publications from the CMI membership team.

To see or search all of the publications, visit the archives page.

Article	Authors	Journal	Date	Abstract	Reach
Phage Cocktails Constrain the Growth of .	Stephen Wandro, Pooja Ghatbale, Hedieh Attai, Clark Hendrickson, Cyril Samillano, Joy Suh, Sage J B Dunham, David T Pride, Katrine Whiteson	MSystems	2022-06-28	Abstract
Context-aware deconvolution of cell-cell communication with Tensor-cell2cell.	Erick Armingol, Hratch M Baghdassarian, Cameron Martino, Araceli Perez-Lopez, Caitlin Aamodt, Rob Knight, Nathan E Lewis	Nature Communications	2022-06-27	Abstract
The molecular impact of life in an indoor environment.	Alexander A Aksenov, Rodolfo A Salido, Alexey V Melnik, Caitriona Brennan, Asker Brejnrod, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, Franck Lejzerowicz, Delphine K Farmer, Marina E Vance, Rob Knight, Pieter C Dorrestein	Science Advances	2022-06-24	Abstract
An M protein coiled coil unfurls and exposes its hydrophobic core to capture LL-37.	Piotr Kolesinski, Kuei-Chen Wang, Yujiro Hirose, Victor Nizet, Partho Ghosh	ELife	2022-06-21	Abstract
Contribution of Streptococcus pyogenes M87 protein to innate immune resistance and virulence.	Yujiro Hirose, Piotr Kolesinski, Masanobu Hiraoka, Satoshi Uchiyama, Raymond H Zurich, Monika Kumaraswamy, Elisabet Bjanes, Partho Ghosh, Shigetada Kawabata, Victor Nizet	Microbial Pathogenesis	2022-06-17	Abstract
A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities.	Justin P Shaffer, Carolina S Carpenter, Cameron Martino, Rodolfo A Salido, Jeremiah J Minich, MacKenzie Bryant, Karenina Sanders, Tara Schwartz, Gregory Humphrey, Austin D Swafford, Rob Knight	BioTechniques	2022-06-17	Abstract
Single-cell characterization of step-wise acquisition of carboplatin resistance in ovarian cancer.	Alexander T Wenzel, Devora Champa, Hrishi Venkatesh, Si Sun, Cheng-Yu Tsai, Jill P Mesirov, Jack D Bui, Stephen B Howell, Olivier Harismendy	NPJ Systems Biology And Applications	2022-06-17	Abstract
Characterizing genetic transmission networks among newly diagnosed HIV-1 infected individuals in eastern China: 2012-2016.	Xiaobei Ding, Antoine Chaillon, Xiaohong Pan, Jiafeng Zhang, Ping Zhong, Lin He, Wanjun Chen, Qin Fan, Jun Jiang, Mingyu Luo, Yan Xia, Zhihong Guo, Davey M Smith	PloS One	2022-06-16	Abstract
Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings.	Victor J Cantú, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Karenina Sanders, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Evelyn S Crescini, Peter De Hoff, Emily Eisner, Abbas Hakim, Bhavika Kapadia, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Shashank Sathe, Phoebe Seaver, Elizabeth W Smoot, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight	MSystems	2022-06-15	Abstract
Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings.	Victor J Cantú, Karenina Sanders, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Peter De Hoff, Emily Eisner, Abbas Hakim, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Ashley Plascencia, Shashank Sathe, Elizabeth W Smoot, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight	MSystems	2022-06-15	Abstract
Potential Immune-Microbiome Interactions in Breast Cancer May Advance Treatment: What's Holding Us Back?	Austin D Swafford, Soni Khandelwal, Shrikant Bhute	Critical Reviews In Immunology	2022-06-13	Abstract
Discovery of Triple Inhibitors of Both SARS-CoV-2 Proteases and Human Cathepsin L.	Ittipat Meewan, Jacob Kattoula, Julius Y Kattoula, Danielle Skinner, Pavla Fajtová, Miriam A Giardini, Brendon Woodworth, James H McKerrow, Jair Lage de Siqueira-Neto, Anthony J O'Donoghue, Ruben Abagyan	Pharmaceuticals (Basel, Switzerland)	2022-06-13	Abstract
Diurnal and eating-associated microbial patterns revealed via high-frequency saliva sampling.	Yichen Hu, Amnon Amir, Xiaochang Huang, Yan Li, Shi Huang, Elaine Wolfe, Sophie Weiss, Rob Knight, Zhenjiang Zech Xu	Genome Research	2022-06-10	Abstract
Letter: non-invasive prediction models to exclude cirrhosis in NAFLD-not everyone fits the mould. Authors' reply.	Danielle Brandman, Marie Boyle, Stuart McPherson, Mark L Van Natta, Arun J Sanyal, Kris Kowdley, Brent Neuschwander-Tetri, Naga Chalasani, Manal F Abdelmalek, Norah A Terrault, Art McCullough, Ricki Bettencourt, Cyrielle Caussy, David E Kleiner, Cynthia Behling, James Tonascia, Quentin M Anstee, Rohit Loomba	Alimentary Pharmacology & Therapeutics	2022-06-10	Abstract
Active genetics comes alive: Exploring the broad applications of CRISPR-based selfish genetic elements (or gene-drives): Exploring the broad applications of CRISPR-based selfish genetic elements (or gene-drives).	Valentino M Gantz, Ethan Bier	BioEssays : News And Reviews In Molecular, Cellular And Developmental Biology	2022-06-09	Abstract
Binding of the SARS-CoV-2 envelope E protein to human BRD4 is essential for infection.	Kendra R Vann, Arpan Acharya, Suk Min Jang, Catherine Lachance, Mohamad Zandian, Tina A Holt, Audrey L Smith, Kabita Pandey, Donald L Durden, Dalia El-Gamal, Jacques Côté, Siddappa N Byrareddy, Tatiana G Kutateladze	Structure (London, England : 1993)	2022-06-09	Abstract
The Urobiomes of Adult Women With Various Lower Urinary Tract Symptoms Status Differ: A Re-Analysis.	Cara Joyce, Thomas Halverson, Caroline Gonzalez, Linda Brubaker, Alan J Wolfe	Frontiers In Cellular And Infection Microbiology	2022-06-09	Abstract
Risk assessment with gut microbiome and metabolite markers in NAFLD development.	Howell Leung, Xiaoxue Long, Yueqiong Ni, Lingling Qian, Emmanouil Nychas, Sara Leal Siliceo, Dennis Pohl, Kati Hanhineva, Yan Liu, Aimin Xu, Henrik B Nielsen, Eugeni Belda, Karine Clément, Rohit Loomba, Huating Li, Weiping Jia, Gianni Panagiotou	Science Translational Medicine	2022-06-08	Abstract
Solithromycin in Children and Adolescents With Community-acquired Bacterial Pneumonia.	Jason E Lang, Christoph P Hornik, Carrie Elliott, Adam Silverstein, Chi Hornik, Amira Al-Uzri, Miroslava Bosheva, John S Bradley, Charissa Fay Corazon Borja-Tabora, David Di John, Ana Mendez Echevarria, Jessica E Ericson, David Friedel, Ferenc Gonczi, Marie Grace Dawn Isidro, Laura P James, Krisztina Kalocsai, Ioannis Koutroulis, Istvan Laki, Anna Lisa T Ong-Lim, Marta Nad, Gabor Simon, Salma Syed, Eva Szabo, Daniel K Benjamin, Michael Cohen-Wolkowiez,	The Pediatric Infectious Disease Journal	2022-06-07	Abstract
The oral microbiome and breast cancer and non-malignant breast disease, and its relationship with the fecal microbiome in the Ghana Breast Health Study.	Zeni Wu, Doratha A Byrd, Yunhu Wan, Daniel Ansong, Joe-Nat Clegg-Lamptey, Beatrice Wiafe-Addai, Lawrence Edusei, Ernest Adjei, Nicholas Titiloye, Florence Dedey, Francis Aitpillah, Joseph Oppong, Verna Vanderpuye, Ernest Osei-Bonsu, Casey L Dagnall, Kristine Jones, Amy Hutchinson, Belynda D Hicks, Thomas U Ahearn, Jianxin Shi, Rob Knight, Richard Biritwum, Joel Yarney, Seth Wiafe, Baffour Awuah, Kofi Nyarko, Jonine D Figueroa, Rashmi Sinha, Montserrat Garcia-Closas, Louise A Brinton, Emily Vogtmann	International Journal Of Cancer	2022-06-03	Abstract
Synchrony and idiosyncrasy in the gut microbiome of wild baboons.	Johannes R Björk, Mauna R Dasari, Kim Roche, Laura Grieneisen, Trevor J Gould, Jean-Christophe Grenier, Vania Yotova, Neil Gottel, David Jansen, Laurence R Gesquiere, Jacob B Gordon, Niki H Learn, Tim L Wango, Raphael S Mututua, J Kinyua Warutere, Long'ida Siodi, Sayan Mukherjee, Luis B Barreiro, Susan C Alberts, Jack A Gilbert, Jenny Tung, Ran Blekhman, Elizabeth A Archie	Nature Ecology & Evolution	2022-06-02	Abstract
Targeted isolation of diverse human protective broadly neutralizing antibodies against SARS-like viruses.	Wan-Ting He, Rami Musharrafieh, Ge Song, Katharina Dueker, Longping V Tse, David R Martinez, Alexandra Schäfer, Sean Callaghan, Peter Yong, Nathan Beutler, Jonathan L Torres, Reid M Volk, Panpan Zhou, Meng Yuan, Hejun Liu, Fabio Anzanello, Tazio Capozzola, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, Ian A Wilson, Yana Safonova, Andrew B Ward, Thomas F Rogers, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees Andrabi	Nature Immunology	2022-06-02	Abstract
Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention.	Stephanie B Orchanian, Julia M Gauglitz, Stephen Wandro, Kelly C Weldon, Megan Doty, Kristina Stillwell, Shalisa Hansen, Lingjing Jiang, Fernando Vargas, Kyung E Rhee, Julie C Lumeng, Pieter C Dorrestein, Rob Knight, Jae H Kim, Se Jin Song, Austin D Swafford	Advanced Biology	2022-06-01	Abstract
Epidemiological and Clinical Features of Kawasaki Disease During the COVID-19 Pandemic in the United States.	Jennifer A Burney, Samantha C Roberts, Laurel L DeHaan, Chisato Shimizu, Emelia V Bainto, Jane W Newburger, Samuel Dominguez, Pei-Ni Jone, Preeti Jaggi, Jacqueline R Szmuszkovicz, Anne H Rowley, Nichole Samuy, Paul Scalici, Adriana H Tremoulet, Daniel R Cayan, Jane C Burns,	JAMA Network Open	2022-06-01	Abstract
Optimizing UniFrac with OpenACC Yields Greater Than One Thousand Times Speed Increase.	Igor Sfiligoi, George Armstrong, Antonio Gonzalez, Daniel McDonald, Rob Knight	MSystems	2022-05-31	Abstract
Bacteriophage-Mediated Perturbation of Defined Bacterial Communities in an Model of the Human Gut.	Hedieh Attai, Jacob Wilde, Roland Liu, Jessica Chopyk, Andrew G Garcia, Emma Allen-Vercoe, David Pride	Microbiology Spectrum	2022-05-31	Abstract
Cross-reactive immunity against the SARS-CoV-2 Omicron variant is low in pediatric patients with prior COVID-19 or MIS-C.	Juanjie Tang, Tanya Novak, Julian Hecker, Gabrielle Grubbs, Fatema Tuz Zahra, Lorenza Bellusci, Sara Pourhashemi, Janet Chou, Kristin Moffitt, Natasha B Halasa, Stephanie P Schwartz, Tracie C Walker, Keiko M Tarquinio, Matt S Zinter, Mary A Staat, Shira J Gertz, Natalie Z Cvijanovich, Jennifer E Schuster, Laura L Loftis, Bria M Coates, Elizabeth H Mack, Katherine Irby, Julie C Fitzgerald, Courtney M Rowan, Michele Kong, Heidi R Flori, Aline B Maddux, Steven L Shein, Hillary Crandall, Janet R Hume, Charlotte V Hobbs, Adriana H Tremoulet, Chisato Shimizu, Jane C Burns, Sabrina R Chen, Hye Kyung Moon, Christoph Lange, Adrienne G Randolph, Surender Khurana	Nature Communications	2022-05-27	Abstract
Fueling the fire in the gut.	Chia-Hao Lin, Li-Fan Lu	The Journal Of Experimental Medicine	2022-05-27	Abstract
Maternal diet is associated with human milk oligosaccharide profile.	Marta Selma-Royo, Sonia González, Miguel Gueimonde, Melinda Chang, Annalee Fürst, Cecilia Martínez-Costa, Lars Bode, Maria Carmen Collado	Molecular Nutrition & Food Research	2022-05-25	Abstract
The Ubiquitous Human Skin Commensal Staphylococcus hominis Protects against Opportunistic Pathogens.	Morgan M Severn, Michael R Williams, Ali Shahbandi, Zoie L Bunch, Laurie M Lyon, Amber Nguyen, Livia S Zaramela, Daniel A Todd, Karsten Zengler, Nadja B Cech, Richard L Gallo, Alexander R Horswill	MBio	2022-05-24	Abstract
Demographic and clinical characteristics associated with variations in antibody response to BNT162b2 COVID-19 vaccination among healthcare workers at an academic medical centre: a longitudinal cohort analysis.	Joseph E Ebinger, Sandy Joung, Yunxian Liu, Min Wu, Brittany Weber, Brian Claggett, Patrick G Botting, Nancy Sun, Matthew Driver, Yu Hung Kao, Briana Khuu, Timothy Wynter, Trevor-Trung Nguyen, Mona Alotaibi, John C Prostko, Edwin C Frias, James L Stewart, Helen S Goodridge, Peter Chen, Stanley C Jordan, Mohit Jain, Sonia Sharma, Justyna Fert-Bober, Jennifer E Van Eyk, Margo B Minissian, Moshe Arditi, Gil Y Melmed, Jonathan G Braun, Dermot P B McGovern, Susan Cheng, Kimia Sobhani	BMJ Open	2022-05-24	Abstract
A Prebiotic Diet Alters the Fecal Microbiome and Improves Sleep in Response to Sleep Disruption in Rats.	Samuel J Bowers, Keith C Summa, Robert S Thompson, Antonio González, Fernando Vargas, Christopher Olker, Peng Jiang, Christopher A Lowry, Pieter C Dorrestein, Rob Knight, Kenneth P Wright, Monika Fleshner, Fred W Turek, Martha H Vitaterna	Frontiers In Neuroscience	2022-05-24	Abstract
Fine scale transitions of the microbiota and metabolome along the gastrointestinal tract of herbivorous fishes.	Wesley J Sparagon, Emily C Gentry, Jeremiah J Minich, Lisa Vollbrecht, Lieve M L Laurens, Eric E Allen, Neil A Sims, Pieter C Dorrestein, Linda Wegley Kelly, Craig E Nelson	Animal Microbiome	2022-05-23	Abstract
Ancient plant-like terpene biosynthesis in corals.	Immo Burkhardt, Tristan de Rond, Percival Yang-Ting Chen, Bradley S Moore	Nature Chemical Biology	2022-05-23	Abstract
Complex and unexpected outcomes of antibiotic therapy against a polymicrobial infection.	Lydia-Ann J Ghuneim, Ruma Raghuvanshi, Kerri A Neugebauer, Douglas V Guzior, Martin H Christian, Bella Schena, Jeremiah M Feiner, Alicia Castillo-Bahena, Jenna Mielke, Marc McClelland, Douglas Conrad, Isaac Klapper, Tianyu Zhang, Robert A Quinn	The ISME Journal	2022-05-21	Abstract
Changes in the gut microbiome associated with liver stiffness improvement in nonalcoholic steatohepatitis.	Suzanne R Sharpton, Ondrej Podlaha, Jen-Chieh Chuang, Yevgeniy Gindin, Robert P Myers, Rohit Loomba	Therapeutic Advances In Gastroenterology	2022-05-18	Abstract
Biosynthesis of Guanitoxin Enables Global Environmental Detection in Freshwater Cyanobacteria.	Stella T Lima, Timothy R Fallon, Jennifer L Cordoza, Jonathan R Chekan, Endrews Delbaje, Austin R Hopiavuori, Danillo O Alvarenga, Steffaney M Wood, Hanna Luhavaya, Jackson T Baumgartner, Felipe A Dörr, Augusto Etchegaray, Ernani Pinto, Shaun M K McKinnie, Marli F Fiore, Bradley S Moore	Journal Of The American Chemical Society	2022-05-18	Abstract
SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with sp.	Victor J Cantú, Rodolfo A Salido, Shi Huang, Gibraan Rahman, Rebecca Tsai, Holly Valentine, Celestine G Magallanes, Stefan Aigner, Nathan A Baer, Tom Barber, Pedro Belda-Ferre, Maryann Betty, MacKenzie Bryant, Martín Casas Maya, Anelizze Castro-Martínez, Marisol Chacón, Willi Cheung, Evelyn S Crescini, Peter De Hoff, Emily Eisner, Sawyer Farmer, Abbas Hakim, Laura Kohn, Alma L Lastrella, Elijah S Lawrence, Sydney C Morgan, Toan T Ngo, Alhakam Nouri, Ashley Plascencia, Christopher A Ruiz, Shashank Sathe, Phoebe Seaver, Tara Shwartz, Elizabeth W Smoot, R Tyler Ostrander, Thomas Valles, Gene W Yeo, Louise C Laurent, Rebecca Fielding-Miller, Rob Knight	MSystems	2022-05-16	Abstract
Nitrite Generating and Depleting Capacity of the Oral Microbiome and Cardiometabolic Risk: Results from ORIGINS.	Charlene E Goh, Bruno Bohn, Clarisse Marotz, Rebecca Molinsky, Sumith Roy, Bruce J Paster, Ching-Yuan Chen, Michael Rosenbaum, Melana Yuzefpolskaya, Paolo C Colombo, Moïse Desvarieux, Panos N Papapanou, David R Jacobs, Rob Knight, Ryan T Demmer	Journal Of The American Heart Association	2022-05-16	Abstract
Case Series of Successful Intravenous Immunoglobulin (IVIG) Treatment in 4 Pregnant Patients with Severe COVID-19-Induced Hypoxia.	Matthew Geriak, Dominic McGrosso, David J Gonzalez, Matthew Dehner, George Sakoulas	The American Journal Of Case Reports	2022-05-14	Abstract
SARS-CoV-2 Seroconversion in an Adult Horse with Direct Contact to a COVID-19 Individual.	Nicola Pusterla, Antoine Chaillon, Caroline Ignacio, Davey M Smith, Samantha Barnum, Kaila O Y Lawton, Greg Smith, Bradley Pickering	Viruses	2022-05-14	Abstract
Changes in Gut Microbiome Composition with Healthy Aging in Humans: Links to Vascular Endothelial Function.	Nathan Greenberg, Marissa L Burnsed-Torres, Antonio Gonzalez, Abigail G Casso, Kara L Lubieniecki, Brian P Ziemba, Matthew J Rossman, Emily C Adam, Michel Chonchol, Kevin P Davy, Rob Knight, Douglas R Seals, Vienna E Brunt	FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology	2022-05-13	Abstract
Evaluation of Small Molecule Inhibitors of Pseudomonas Virulence factor LasB as Non-Traditional Immunotherapeutics.	Sophia R Chou, Doris L LaRock, Joshua Sun, Victor Nizet, Julia K Bohannon, Christopher N LaRock	FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology	2022-05-13	Abstract
Insights from C. elegans into Microsporidia Biology and Host-Pathogen Relationships.	Eillen Tecle, Emily R Troemel	Experientia Supplementum (2012)	2022-05-11	Abstract
Variation in Survival and Gut Microbiome Composition of Hatchery-Grown Native Oysters at Various Locations within the Puget Sound.	Emily Kunselman, Jeremiah J Minich, Micah Horwith, Jack A Gilbert, Eric E Allen	Microbiology Spectrum	2022-05-10	Abstract
The Impact of Exclusive Enteral Nutrition on the Gut Microbiome of Children with Medical Complexity.	Julia Beauchamp-Walters, Gajender Aleti, Lourdes Herrera, Justine Debelius, Natalie Lima, Pritha Dalal, Suzi Hong, Rob Knight, Kyung E Rhee	JPEN. Journal Of Parenteral And Enteral Nutrition	2022-05-08	Abstract
Cerebrospinal Fluid Shunt Infections: A Multicenter Pediatric Study.	Alastair McAlpine, Joan L Robinson, Michelle Barton, Archana Balamohan, H Dele Davies, Gwenn Skar, Marie-Astrid Lefebvre, Ahmed Almadani, Dolores Freire, Nicole Le Saux, Jennifer Bowes, Jocelyn A Srigley, Patrick Passarelli, John Bradley, Sarah Khan, Rupeena Purewal, Isabelle Viel-Thériault, Adrianna Ranger, Michael T Hawkes,	The Pediatric Infectious Disease Journal	2022-05-06	Abstract
Zebrafish: an underutilized tool for discovery in host-microbe interactions.	Alexandra Stream, Cressida A Madigan	Trends In Immunology	2022-05-05	Abstract
A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli.	Irina A Rodionova, Ye Gao, Jonathan Monk, Ying Hefner, Nicholas Wong, Richard Szubin, Hyun Gyu Lim, Dmitry A Rodionov, Zhongge Zhang, Milton H Saier, Bernhard O Palsson	Scientific Reports	2022-05-04	Abstract
Subcellular organization of viral particles during maturation of nucleus-forming jumbo phage.	Vorrapon Chaikeeratisak, Kanika Khanna, Katrina T Nguyen, MacKennon E Egan, Eray Enustun, Emily Armbruster, Jina Lee, Kit Pogliano, Elizabeth Villa, Joe Pogliano	Science Advances	2022-05-04	Abstract
Author Correction: Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly.	Mahul Chakraborty, Arunachalam Ramaiah, Adriana Adolfi, Paige Halas, Bhagyashree Kaduskar, Luna Thanh Ngo, Suvratha Jayaprasad, Kiran Paul, Saurabh Whadgar, Subhashini Srinivasan, Suresh Subramani, Ethan Bier, Anthony A James, J J Emerson	BMC Biology	2022-05-02	Abstract
Transcription Factor 4 loss-of-function is associated with deficits in progenitor proliferation and cortical neuron content.	Fabio Papes, Antonio P Camargo, Janaina S de Souza, Vinicius M A Carvalho, Ryan A Szeto, Erin LaMontagne, José R Teixeira, Simoni H Avansini, Sandra M Sánchez-Sánchez, Thiago S Nakahara, Carolina N Santo, Wei Wu, Hang Yao, Barbara M P Araújo, Paulo E N F Velho, Gabriel G Haddad, Alysson R Muotri	Nature Communications	2022-05-02	Abstract
Localized electrical stimulation triggers cell-type-specific proliferation in biofilms.	Colin J Comerci, Alan L Gillman, Leticia Galera-Laporta, Edgar Gutierrez, Alex Groisman, Joseph W Larkin, Jordi Garcia-Ojalvo, Gürol M Süel	Cell Systems	2022-05-02	Abstract
Blockade of organic anion transport in humans after treatment with the drug probenecid leads to major metabolic alterations in plasma and urine.	Jeffry C Granados, Vibha Bhatnagar, Sanjay K Nigam	Clinical Pharmacology And Therapeutics	2022-05-01	Abstract
DEPP: Deep Learning Enables Extending Species Trees using Single Genes.	Yueyu Jiang, Metin Balaban, Qiyun Zhu, Siavash Mirarab	Systematic Biology	2022-04-29	Abstract
Effects of 'Healthy' Fecal Microbiota Transplantation against the Deterioration of Depression in Fawn-Hooded Rats.	Bing Hu, Promi Das, Xianglin Lv, Meng Shi, Jiye Aa, Kun Wang, Liping Duan, Jack A Gilbert, Yong Nie, Xiao-Lei Wu	MSystems	2022-04-28	Abstract
Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype.	Cameron Martino, Daniel McDonald, Kalen Cantrell, Amanda Hazel Dilmore, Yoshiki Vázquez-Baeza, Liat Shenhav, Justin P Shaffer, Gibraan Rahman, George Armstrong, Celeste Allaband, Se Jin Song, Rob Knight	MSystems	2022-04-28	Abstract
Associations between maternal obesity and offspring gut microbiome in the first year of life.	Stephanie P Gilley, Meghan L Ruebel, Clark Sims, Ying Zhong, Donald Turner, Renny S Lan, Lindsay M Pack, Brian D Piccolo, Sree V Chintapalli, Ann Abraham, Lars Bode, Aline Andres, Kartik Shankar	Pediatric Obesity	2022-04-27	Abstract
Intestinal homeostasis and inflammation: gut microbiota at the crossroads of pancreas-intestinal barrier axis.	Zhongwei Zhang, Izumi Tanaka, Zhen Pan, Peter B Ernst, Hiroshi Kiyono, Yosuke Kurashima	European Journal Of Immunology	2022-04-27	Abstract
Systems biology approach to functionally assess the pangenome reveals genetic diversity with discriminatory power.	Charles J Norsigian, Heather A Danhof, Colleen K Brand, Firas S Midani, Jared T Broddrick, Tor C Savidge, Robert A Britton, Bernhard O Palsson, Jennifer K Spinler, Jonathan M Monk	Proceedings Of The National Academy Of Sciences Of The United States Of America	2022-04-27	Abstract
Nutrient Gradients Mediate Complex Colony-Level Antibiotic Responses in Structured Microbial Populations.	Mirjana Stevanovic, Thomas Boukéké-Lesplulier, Lukas Hupe, Jeff Hasty, Philip Bittihn, Daniel Schultz	Frontiers In Microbiology	2022-04-27	Abstract
Machine-learning from Pseudomonas putida KT2440 transcriptomes reveals its transcriptional regulatory network.	Hyun Gyu Lim, Kevin Rychel, Anand V Sastry, Gayle J Bentley, Joshua Mueller, Heidi S Schindel, Peter E Larsen, Philip D Laible, Adam M Guss, Wei Niu, Christopher W Johnson, Gregg T Beckham, Adam M Feist, Bernhard O Palsson	Metabolic Engineering	2022-04-27	Abstract
FastViFi: Fast and accurate detection of (Hybrid) Viral DNA and RNA.	Sara Javadzadeh, Utkrisht Rajkumar, Nam Nguyen, Shahab Sarmashghi, Jens Luebeck, Jingbo Shang, Vineet Bafna	NAR Genomics And Bioinformatics	2022-04-26	Abstract
Antibiotic Activity Altered by Competitive Interactions Between Two Coral Reef-Associated Bacteria.	Samantha J Mascuch, Alyssa Demko, Samson Viulu, Joape Ginigini, Katy Soapi, Paul Jensen, Julia Kubanek	Microbial Ecology	2022-04-23	Abstract
foodMASST a mass spectrometry search tool for foods and beverages.	Kiana A West, Robin Schmid, Julia M Gauglitz, Mingxun Wang, Pieter C Dorrestein	NPJ Science Of Food	2022-04-20	Abstract
Early microbial markers of periodontal and cardiometabolic diseases in ORIGINS.	Clarisse Marotz, Rebecca Molinsky, Cameron Martino, Bruno Bohn, Sumith Roy, Michael Rosenbaum, Moïse Desvarieux, Melana Yuzefpolskaya, Bruce J Paster, David R Jacobs, Paolo C Colombo, Panos N Papapanou, Rob Knight, Ryan T Demmer	NPJ Biofilms And Microbiomes	2022-04-20	Abstract
The impact of maternal asthma on the preterm infants' gut metabolome and microbiome (MAP study).	Shiyu S Bai-Tong, Megan S Thoemmes, Kelly C Weldon, Diba Motazavi, Jessica Kitsen, Shalisa Hansen, Annalee Furst, Bob Geng, Se Jin Song, Jack A Gilbert, Lars Bode, Pieter C Dorrestein, Rob Knight, Sydney A Leibel, Sandra L Leibel	Scientific Reports	2022-04-19	Abstract
Menopause Is Associated with an Altered Gut Microbiome and Estrobolome, with Implications for Adverse Cardiometabolic Risk in the Hispanic Community Health Study/Study of Latinos.	Brandilyn A Peters, Juan Lin, Qibin Qi, Mykhaylo Usyk, Carmen R Isasi, Yasmin Mossavar-Rahmani, Carol A Derby, Nanette Santoro, Krista M Perreira, Martha L Daviglus, Michelle A Kominiarek, Jianwen Cai, Rob Knight, Robert D Burk, Robert C Kaplan	MSystems	2022-04-13	Abstract
Impact of Clopidogrel on Clinical Outcomes in Patients with Staphylococcus aureus Bacteremia: a National Retrospective Cohort Study.	Aisling R Caffrey, Haley J Appaneal, Kerry L LaPlante, Vrishali V Lopes, Erlinda R Ulloa, Victor Nizet, George Sakoulas	Antimicrobial Agents And Chemotherapy	2022-04-13	Abstract
Symptom improvement with mirabegron treatment is associated with urobiome changes in adult women.	Thomas Halverson, Elizabeth R Mueller, Linda Brubaker, Alan J Wolfe	International Urogynecology Journal	2022-04-12	Abstract
P53 deficiency affects cholesterol esterification to exacerbate hepatocarcinogenesis.	Yahui Zhu, Li Gu, Xi Lin, Xinyi Zhou, Bingjun Lu, Cheng Liu, Yajun Li, Edward V Prochownik, Michael Karin, Fubing Wang, Youjun Li	Hepatology (Baltimore, Md.)	2022-04-10	Abstract
Unlocking capacities of genomics for the COVID-19 response and future pandemics.	Sergey Knyazev, Karishma Chhugani, Varuni Sarwal, Ram Ayyala, Harman Singh, Smruthi Karthikeyan, Dhrithi Deshpande, Pelin Icer Baykal, Zoia Comarova, Angela Lu, Yuri Porozov, Tetyana I Vasylyeva, Joel O Wertheim, Braden T Tierney, Charles Y Chiu, Ren Sun, Aiping Wu, Malak S Abedalthagafi, Victoria M Pak, Shivashankar H Nagaraj, Adam L Smith, Pavel Skums, Bogdan Pasaniuc, Andrey Komissarov, Christopher E Mason, Eric Bortz, Philippe Lemey, Fyodor Kondrashov, Niko Beerenwinkel, Tommy Tsan-Yuk Lam, Nicholas C Wu, Alex Zelikovsky, Rob Knight, Keith A Crandall, Serghei Mangul	Nature Methods	2022-04-08	Abstract
Mapping genomic loci implicates genes and synaptic biology in schizophrenia.	Vassily Trubetskoy, Antonio F Pardiñas, Ting Qi, Georgia Panagiotaropoulou, Swapnil Awasthi, Tim B Bigdeli, Julien Bryois, Chia-Yen Chen, Charlotte A Dennison, Lynsey S Hall, Max Lam, Kyoko Watanabe, Oleksandr Frei, Tian Ge, Janet C Harwood, Frank Koopmans, Sigurdur Magnusson, Alexander L Richards, Julia Sidorenko, Yang Wu, Jian Zeng, Jakob Grove, Minsoo Kim, Zhiqiang Li, Georgios Voloudakis, Wen Zhang, Mark Adams, Ingrid Agartz, Elizabeth G Atkinson, Esben Agerbo, Mariam Al Eissa, Margot Albus, Madeline Alexander, Behrooz Z Alizadeh, Köksal Alptekin, Thomas D Als, Farooq Amin, Volker Arolt, Manuel Arrojo, Lavinia Athanasiu, Maria Helena Azevedo, Silviu A Bacanu, Nicholas J Bass, Martin Begemann, Richard A Belliveau, Judit Bene, Beben Benyamin, Sarah E Bergen, Giuseppe Blasi, Julio Bobes, Stefano Bonassi, Alice Braun, Rodrigo Affonseca Bressan, Evelyn J Bromet, Richard Bruggeman, Peter F Buckley, Randy L Buckner, Jonas Bybjerg-Grauholm, Wiepke Cahn, Murray J Cairns, Monica E Calkins, Vaughan J Carr, David Castle, Stanley V Catts, Kimberley D Chambert, Raymond C K Chan, Boris Chaumette, Wei Cheng, Eric F C Cheung, Siow Ann Chong, David Cohen, Angèle Consoli, Quirino Cordeiro, Javier Costas, Charles Curtis, Michael Davidson, Kenneth L Davis, Lieuwe de Haan, Franziska Degenhardt, Lynn E DeLisi, Ditte Demontis, Faith Dickerson, Dimitris Dikeos, Timothy Dinan, Srdjan Djurovic, Jubao Duan, Giuseppe Ducci, Frank Dudbridge, Johan G Eriksson, Lourdes Fañanás, Stephen V Faraone, Alessia Fiorentino, Andreas Forstner, Josef Frank, Nelson B Freimer, Menachem Fromer, Alessandra Frustaci, Ary Gadelha, Giulio Genovese, Elliot S Gershon, Marianna Giannitelli, Ina Giegling, Paola Giusti-Rodríguez, Stephanie Godard, Jacqueline I Goldstein, Javier González Peñas, Ana González-Pinto, Srihari Gopal, Jacob Gratten, Michael F Green, Tiffany A Greenwood, Olivier Guillin, Sinan Gülöksüz, Raquel E Gur, Ruben C Gur, Blanca Gutiérrez, Eric Hahn, Hakon Hakonarson, Vahram Haroutunian, Annette M Hartmann, Carol Harvey, Caroline Hayward, Frans A Henskens, Stefan Herms, Per Hoffmann, Daniel P Howrigan, Masashi Ikeda, Conrad Iyegbe, Inge Joa, Antonio Julià, Anna K Kähler, Tony Kam-Thong, Yoichiro Kamatani, Sena Karachanak-Yankova, Oussama Kebir, Matthew C Keller, Brian J Kelly, Andrey Khrunin, Sung-Wan Kim, Janis Klovins, Nikolay Kondratiev, Bettina Konte, Julia Kraft, Michiaki Kubo, Vaidutis Kučinskas, Zita Ausrele Kučinskiene, Agung Kusumawardhani, Hana Kuzelova-Ptackova, Stefano Landi, Laura C Lazzeroni, Phil H Lee, Sophie E Legge, Douglas S Lehrer, Rebecca Lencer, Bernard Lerer, Miaoxin Li, Jeffrey Lieberman, Gregory A Light, Svetlana Limborska, Chih-Min Liu, Jouko Lönnqvist, Carmel M Loughland, Jan Lubinski, Jurjen J Luykx, Amy Lynham, Milan Macek, Andrew Mackinnon, Patrik K E Magnusson, Brion S Maher, Wolfgang Maier, Dolores Malaspina, Jacques Mallet, Stephen R Marder, Sara Marsal, Alicia R Martin, Lourdes Martorell, Manuel Mattheisen, Robert W McCarley, Colm McDonald, John J McGrath, Helena Medeiros, Sandra Meier, Bela Melegh, Ingrid Melle, Raquelle I Mesholam-Gately, Andres Metspalu, Patricia T Michie, Lili Milani, Vihra Milanova, Marina Mitjans, Espen Molden, Esther Molina, María Dolores Molto, Valeria Mondelli, Carmen Moreno, Christopher P Morley, Gerard Muntané, Kieran C Murphy, Inez Myin-Germeys, Igor Nenadić, Gerald Nestadt, Liene Nikitina-Zake, Cristiano Noto, Keith H Nuechterlein, Niamh Louise O'Brien, F Anthony O'Neill, Sang-Yun Oh, Ann Olincy, Vanessa Kiyomi Ota, Christos Pantelis, George N Papadimitriou, Mara Parellada, Tiina Paunio, Renata Pellegrino, Sathish Periyasamy, Diana O Perkins, Bruno Pfuhlmann, Olli Pietiläinen, Jonathan Pimm, David Porteous, John Powell, Diego Quattrone, Digby Quested, Allen D Radant, Antonio Rampino, Mark H Rapaport, Anna Rautanen, Abraham Reichenberg, Cheryl Roe, Joshua L Roffman, Julian Roth, Matthias Rothermundt, Bart P F Rutten, Safaa Saker-Delye, Veikko Salomaa, Julio Sanjuan, Marcos Leite Santoro, Adam Savitz, Ulrich Schall, Rodney J Scott, Larry J Seidman, Sally Isabel Sharp, Jianxin Shi, Larry J Siever, Engilbert Sigurdsson, Kang Sim, Nora Skarabis, Petr Slominsky, Hon-Cheong So, Janet L Sobell, Erik Söderman, Helen J Stain, Nils Eiel Steen, Agnes A Steixner-Kumar, Elisabeth Stögmann, William S Stone, Richard E Straub, Fabian Streit, Eric Strengman, T Scott Stroup, Mythily Subramaniam, Catherine A Sugar, Jaana Suvisaari, Dragan M Svrakic, Neal R Swerdlow, Jin P Szatkiewicz, Thi Minh Tam Ta, Atsushi Takahashi, Chikashi Terao, Florence Thibaut, Draga Toncheva, Paul A Tooney, Silvia Torretta, Sarah Tosato, Gian Battista Tura, Bruce I Turetsky, Alp Üçok, Arne Vaaler, Therese van Amelsvoort, Ruud van Winkel, Juha Veijola, John Waddington, Henrik Walter, Anna Waterreus, Bradley T Webb, Mark Weiser, Nigel M Williams, Stephanie H Witt, Brandon K Wormley, Jing Qin Wu, Zhida Xu, Robert Yolken, Clement C Zai, Wei Zhou, Feng Zhu, Fritz Zimprich, Eşref Cem Atbaşoğlu, Muhammad Ayub, Christian Benner, Alessandro Bertolino, Donald W Black, Nicholas J Bray, Gerome Breen, Nancy G Buccola, William F Byerley, Wei J Chen, C Robert Cloninger, Benedicto Crespo-Facorro, Gary Donohoe, Robert Freedman, Cherrie Galletly, Michael J Gandal, Massimo Gennarelli, David M Hougaard, Hai-Gwo Hwu, Assen V Jablensky, Steven A McCarroll, Jennifer L Moran, Ole Mors, Preben B Mortensen, Bertram Müller-Myhsok, Amanda L Neil, Merete Nordentoft, Michele T Pato, Tracey L Petryshen, Matti Pirinen, Ann E Pulver, Thomas G Schulze, Jeremy M Silverman, Jordan W Smoller, Eli A Stahl, Debby W Tsuang, Elisabet Vilella, Shi-Heng Wang, Shuhua Xu, , , , , Rolf Adolfsson, Celso Arango, Bernhard T Baune, Sintia Iole Belangero, Anders D Børglum, David Braff, Elvira Bramon, Joseph D Buxbaum, Dominique Campion, Jorge A Cervilla, Sven Cichon, David A Collier, Aiden Corvin, David Curtis, Marta Di Forti, Enrico Domenici, Hannelore Ehrenreich, Valentina Escott-Price, Tõnu Esko, Ayman H Fanous, Anna Gareeva, Micha Gawlik, Pablo V Gejman, Michael Gill, Stephen J Glatt, Vera Golimbet, Kyung Sue Hong, Christina M Hultman, Steven E Hyman, Nakao Iwata, Erik G Jönsson, René S Kahn, James L Kennedy, Elza Khusnutdinova, George Kirov, James A Knowles, Marie-Odile Krebs, Claudine Laurent-Levinson, Jimmy Lee, Todd Lencz, Douglas F Levinson, Qingqin S Li, Jianjun Liu, Anil K Malhotra, Dheeraj Malhotra, Andrew McIntosh, Andrew McQuillin, Paulo R Menezes, Vera A Morgan, Derek W Morris, Bryan J Mowry, Robin M Murray, Vishwajit Nimgaonkar, Markus M Nöthen, Roel A Ophoff, Sara A Paciga, Aarno Palotie, Carlos N Pato, Shengying Qin, Marcella Rietschel, Brien P Riley, Margarita Rivera, Dan Rujescu, Meram C Saka, Alan R Sanders, Sibylle G Schwab, Alessandro Serretti, Pak C Sham, Yongyong Shi, David St Clair, Hreinn Stefánsson, Kari Stefansson, Ming T Tsuang, Jim van Os, Marquis P Vawter, Daniel R Weinberger, Thomas Werge, Dieter B Wildenauer, Xin Yu, Weihua Yue, Peter A Holmans, Andrew J Pocklington, Panos Roussos, Evangelos Vassos, Matthijs Verhage, Peter M Visscher, Jian Yang, Danielle Posthuma, Ole A Andreassen, Kenneth S Kendler, Michael J Owen, Naomi R Wray, Mark J Daly, Hailiang Huang, Benjamin M Neale, Patrick F Sullivan, Stephan Ripke, James T R Walters, Michael C O'Donovan,	Nature	2022-04-08	Abstract
Sialoglycan binding patterns of bacterial AB toxin B subunits correlate with host range and toxicity, indicating evolution independent of A subunits.	Naazneen Khan, Aniruddha Sasmal, Zahra Khedri, Patrick Secrest, Andrea Verhagen, Saurabh Srivastava, Nissi Varki, Xi Chen, Hai Yu, Travis Beddoe, Adrienne W Paton, James C Paton, Ajit Varki	The Journal Of Biological Chemistry	2022-04-07	Abstract
Microbe Profile: : natural products and the evolution of a unique marine bacterium.	Paul R Jensen	Microbiology (Reading, England)	2022-04-05	Abstract
Involvement of Qa-1/HLA-E-Restricted CD8+ T Cells in Anti-Microbe and Anti-Cancer Immunity as Well as in Immune Regulation.	Huiming Sheng, Suryasarathi Dasgupta, Vipin Chaturvedi Kumar	Critical Reviews In Immunology	2022-04-05	Abstract
Factors associated with COVID-19 vaccine intent among Latino SNAP participants in Southern California.	Vanessa P Scott, Sarah Hiller-Venegas, Kate Edra, Joe Prickitt, Yesenia Esquivel, Blanca Melendrez, Kyung E Rhee	BMC Public Health	2022-04-05	Abstract
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy.	Qiyun Zhu, Shi Huang, Antonio Gonzalez, Imran McGrath, Daniel McDonald, Niina Haiminen, George Armstrong, Yoshiki Vázquez-Baeza, Julian Yu, Justin Kuczynski, Gregory D Sepich-Poore, Austin D Swafford, Promi Das, Justin P Shaffer, Franck Lejzerowicz, Pedro Belda-Ferre, Aki S Havulinna, Guillaume Méric, Teemu Niiranen, Leo Lahti, Veikko Salomaa, Ho-Cheol Kim, Mohit Jain, Michael Inouye, Jack A Gilbert, Rob Knight	MSystems	2022-04-04	Abstract
Intestinal virome in patients with alcohol use disorder and after abstinence.	Cynthia L Hsu, Xinlian Zhang, Lu Jiang, Sonja Lang, Phillipp Hartmann, David Pride, Derrick E Fouts, Peter Stärkel, Bernd Schnabl	Hepatology Communications	2022-04-02	Abstract
Complete genomic and epigenetic maps of human centromeres.	Nicolas Altemose, Glennis A Logsdon, Andrey V Bzikadze, Pragya Sidhwani, Sasha A Langley, Gina V Caldas, Savannah J Hoyt, Lev Uralsky, Fedor D Ryabov, Colin J Shew, Michael E G Sauria, Matthew Borchers, Ariel Gershman, Alla Mikheenko, Valery A Shepelev, Tatiana Dvorkina, Olga Kunyavskaya, Mitchell R Vollger, Arang Rhie, Ann M McCartney, Mobin Asri, Ryan Lorig-Roach, Kishwar Shafin, Julian K Lucas, Sergey Aganezov, Daniel Olson, Leonardo Gomes de Lima, Tamara Potapova, Gabrielle A Hartley, Marina Haukness, Peter Kerpedjiev, Fedor Gusev, Kristof Tigyi, Shelise Brooks, Alice Young, Sergey Nurk, Sergey Koren, Sofie R Salama, Benedict Paten, Evgeny I Rogaev, Aaron Streets, Gary H Karpen, Abby F Dernburg, Beth A Sullivan, Aaron F Straight, Travis J Wheeler, Jennifer L Gerton, Evan E Eichler, Adam M Phillippy, Winston Timp, Megan Y Dennis, Rachel J O'Neill, Justin M Zook, Michael C Schatz, Pavel A Pevzner, Mark Diekhans, Charles H Langley, Ivan A Alexandrov, Karen H Miga	Science (New York, N.Y.)	2022-04-01	Abstract
The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients.	Carlos G Gonzalez, Robert H Mills, Melissa C Kordahi, Marvic Carrillo-Terrazas, Henrry Secaira-Morocho, Christella E Widjaja, Matthew S Tsai, Yash Mittal, Brian A Yee, Fernando Vargas, Kelly Weldon, Julia M Gauglitz, Clara Delaroque, Consuelo Sauceda, Leigh-Ana Rossitto, Gail Ackermann, Gregory Humphrey, Austin D Swafford, Corey A Siegel, Jay C Buckey, Laura E Raffals, Charlotte Sadler, Peter Lindholm, Kathleen M Fisch, Mark Valaseck, Arief Suriawinata, Gene W Yeo, Pradipta Ghosh, John T Chang, Hiutung Chu, Pieter Dorrestein, Qiyun Zhu, Benoit Chassaing, Rob Knight, David J Gonzalez, Parambir S Dulai	Cellular And Molecular Gastroenterology And Hepatology	2022-04-01	Abstract
Preserved SARS-CoV-2 Vaccine Cell-Mediated Immunogenicity in Patients With Inflammatory Bowel Disease on Immune-Modulating Therapies.	Brigid S Boland, Benjamin Goodwin, Zeli Zhang, Nathaniel Bloom, Yu Kato, Jennifer Neill, Helen Le, Tiffani Tysl, Angelina E Collins, Parambir S Dulai, Siddharth Singh, Nghia H Nguyen, Alba Grifoni, Alessandro Sette, Daniela Weiskopf, John T Chang, Jennifer M Dan	Clinical And Translational Gastroenterology	2022-04-01	Abstract
Mistaken MIS-C: A Case Series of Bacterial Enteritis Mimicking MIS-C.	Zephyr D Dworsky, Jordan E Roberts, Mary Beth F Son, Adriana H Tremoulet, Jane W Newburger, Jane C Burns	The Pediatric Infectious Disease Journal	2022-04-01	Abstract
Machine learning from Pseudomonas aeruginosa transcriptomes identifies independently modulated sets of genes associated with known transcriptional regulators.	Akanksha Rajput, Hannah Tsunemoto, Anand V Sastry, Richard Szubin, Kevin Rychel, Joseph Sugie, Joe Pogliano, Bernhard O Palsson	Nucleic Acids Research	2022-03-31	Abstract
The complete sequence of a human genome.	Sergey Nurk, Sergey Koren, Arang Rhie, Mikko Rautiainen, Andrey V Bzikadze, Alla Mikheenko, Mitchell R Vollger, Nicolas Altemose, Lev Uralsky, Ariel Gershman, Sergey Aganezov, Savannah J Hoyt, Mark Diekhans, Glennis A Logsdon, Michael Alonge, Stylianos E Antonarakis, Matthew Borchers, Gerard G Bouffard, Shelise Y Brooks, Gina V Caldas, Nae-Chyun Chen, Haoyu Cheng, Chen-Shan Chin, William Chow, Leonardo G de Lima, Philip C Dishuck, Richard Durbin, Tatiana Dvorkina, Ian T Fiddes, Giulio Formenti, Robert S Fulton, Arkarachai Fungtammasan, Erik Garrison, Patrick G S Grady, Tina A Graves-Lindsay, Ira M Hall, Nancy F Hansen, Gabrielle A Hartley, Marina Haukness, Kerstin Howe, Michael W Hunkapiller, Chirag Jain, Miten Jain, Erich D Jarvis, Peter Kerpedjiev, Melanie Kirsche, Mikhail Kolmogorov, Jonas Korlach, Milinn Kremitzki, Heng Li, Valerie V Maduro, Tobias Marschall, Ann M McCartney, Jennifer McDaniel, Danny E Miller, James C Mullikin, Eugene W Myers, Nathan D Olson, Benedict Paten, Paul Peluso, Pavel A Pevzner, David Porubsky, Tamara Potapova, Evgeny I Rogaev, Jeffrey A Rosenfeld, Steven L Salzberg, Valerie A Schneider, Fritz J Sedlazeck, Kishwar Shafin, Colin J Shew, Alaina Shumate, Ying Sims, Arian F A Smit, Daniela C Soto, Ivan Sović, Jessica M Storer, Aaron Streets, Beth A Sullivan, Françoise Thibaud-Nissen, James Torrance, Justin Wagner, Brian P Walenz, Aaron Wenger, Jonathan M D Wood, Chunlin Xiao, Stephanie M Yan, Alice C Young, Samantha Zarate, Urvashi Surti, Rajiv C McCoy, Megan Y Dennis, Ivan A Alexandrov, Jennifer L Gerton, Rachel J O'Neill, Winston Timp, Justin M Zook, Michael C Schatz, Evan E Eichler, Karen H Miga, Adam M Phillippy	Science (New York, N.Y.)	2022-03-31	Abstract
Obesity alters pathology and treatment response in inflammatory disease.	Sagar P Bapat, Caroline Whitty, Cody T Mowery, Yuqiong Liang, Arum Yoo, Zewen Jiang, Michael C Peters, Ling-Juan Zhang, Ian Vogel, Carmen Zhou, Vinh Q Nguyen, Zhongmei Li, Christina Chang, Wandi S Zhu, Annette T Hastie, Helen He, Xin Ren, Wenli Qiu, Sarah G Gayer, Chang Liu, Eun Jung Choi, Marlys Fassett, Jarish N Cohen, Jamie L Sturgill, Laura E Crotty Alexander, Jae Myoung Suh, Christopher Liddle, Annette R Atkins, Ruth T Yu, Michael Downes, Sihao Liu, Barbara S Nikolajczyk, In-Kyu Lee, Emma Guttman-Yassky, K Mark Ansel, Prescott G Woodruff, John V Fahy, Dean Sheppard, Richard L Gallo, Chun Jimmie Ye, Ronald M Evans, Ye Zheng, Alexander Marson	Nature	2022-03-30	Abstract
Metabolic Profiling of Interspecies Interactions During Sessile Bacterial Cultivation Reveals Growth and Sporulation Induction in in Response to .	Jakob Herschend, Madeleine Ernst, Klaus Koren, Alexey V Melnik, Ricardo R da Silva, Henriette L Røder, Zacharias B V Damholt, Per Hägglund, Birte Svensson, Søren J Sørensen, Michael Kühl, Pieter C Dorrestein, Mette Burmølle	Frontiers In Cellular And Infection Microbiology	2022-03-29	Abstract
Synthetic 3'-UTR valves for optimal metabolic flux control in Escherichia coli.	Donghui Choe, Kangsan Kim, Minjeong Kang, Seung-Goo Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho	Nucleic Acids Research	2022-03-29	Abstract
The ViReflow pipeline enables user friendly large scale viral consensus genome reconstruction.	Niema Moshiri, Kathleen M Fisch, Amanda Birmingham, Peter DeHoff, Gene W Yeo, Kristen Jepsen, Louise C Laurent, Rob Knight	Scientific Reports	2022-03-24	Abstract
High Sensitivity, Rapid Detection of Virus in High Traffic Environments.	Lauren Waller, Zhilin Guo, Rui Tang, Zunming Zhang, Edward Wang, Jarred Yasuhara-Bell, Louise Laurent, Yu-Hwa Lo	Frontiers In Bioengineering And Biotechnology	2022-03-24	Abstract
Potent Activity of Ertapenem Plus Cefazolin Within Staphylococcal Biofilms: A Contributing Factor in the Treatment of Methicillin-Susceptible Endocarditis.	Jessica Gilbertie, Erlinda R Ulloa, Jennifer C Daiker, Khanh Nguyen, Dan Smelter, Warren Rose, Matthew Geriak, Lauren V Schnabel, Victor Nizet, George Sakoulas	Open Forum Infectious Diseases	2022-03-23	Abstract
Early prediction of incident liver disease using conventional risk factors and gut-microbiome-augmented gradient boosting.	Yang Liu, Guillaume Méric, Aki S Havulinna, Shu Mei Teo, Fredrik Åberg, Matti Ruuskanen, Jon Sanders, Qiyun Zhu, Anupriya Tripathi, Karin Verspoor, Susan Cheng, Mohit Jain, Pekka Jousilahti, Yoshiki Vázquez-Baeza, Rohit Loomba, Leo Lahti, Teemu Niiranen, Veikko Salomaa, Rob Knight, Michael Inouye	Cell Metabolism	2022-03-22	Abstract
Microbiomes of Hadal Fishes across Trench Habitats Contain Similar Taxa and Known Piezophiles.	Jessica M Blanton, Logan M Peoples, Mackenzie E Gerringer, Caroline M Iacuaniello, Natalya D Gallo, Thomas D Linley, Alan J Jamieson, Jeffrey C Drazen, Douglas H Bartlett, Eric E Allen	MSphere	2022-03-21	Abstract
Machine Learning of All Mycobacterium tuberculosis H37Rv RNA-seq Data Reveals a Structured Interplay between Metabolism, Stress Response, and Infection.	Reo Yoo, Kevin Rychel, Saugat Poudel, Tahani Al-Bulushi, Yuan Yuan, Siddharth Chauhan, Cameron Lamoureux, Bernhard O Palsson, Anand Sastry	MSphere	2022-03-21	Abstract
PI3K-α/mTOR/BRD4 inhibitor alone or in combination with other anti-virals blocks replication of SARS-CoV-2 and its variants of concern including Delta and Omicron.	Arpan Acharya, Anup S Pathania, Kabita Pandey, Michellie Thurman, Kendra R Vann, Tatiana G Kutateladze, Kishore B Challagundala, Donald L Durden, Siddappa N Byrareddy	Clinical And Translational Medicine	2022-03-20	Abstract
Correction to: Precision medicine in perinatal depression in light of the human microbiome.	Beatriz Peñalver Bernabé, Pauline M Maki, Shannon M Dowty, Mariana Lauren Cralle Salas, Zainab Shah, Jack A Gilbert	Psychopharmacology	2022-03-18	Abstract
Age-associated impairment of T cell immunity is linked to sex-dimorphic elevation of N-glycan branching.	Haik Mkhikian, Ken L Hayama, Khachik Khachikyan, Carey Li, Raymond W Zhou, Judy Pawling, Suzi Klaus, Phuong Q N Tran, Kim M Ly, Andrew D Gong, Hayk Saryan, Jasper L Hai, David Grigoryan, Philip L Lee, Barbara L Newton, Manuela Raffatellu, James W Dennis, Michael Demetriou	Nature Aging	2022-03-18	Abstract
Global urban environmental change drives adaptation in white clover.	James S Santangelo, Rob W Ness, Beata Cohan, Connor R Fitzpatrick, Simon G Innes, Sophie Koch, Lindsay S Miles, Samreen Munim, Pedro R Peres-Neto, Cindy Prashad, Alex T Tong, Windsor E Aguirre, Philips O Akinwole, Marina Alberti, Jackie Álvarez, Jill T Anderson, Joseph J Anderson, Yoshino Ando, Nigel R Andrew, Fabio Angeoletto, Daniel N Anstett, Julia Anstett, Felipe Aoki-Gonçalves, A Z Andis Arietta, Mary T K Arroyo, Emily J Austen, Fernanda Baena-Díaz, Cory A Barker, Howard A Baylis, Julia M Beliz, Alfonso Benitez-Mora, David Bickford, Gabriela Biedebach, Gwylim S Blackburn, Mannfred M A Boehm, Stephen P Bonser, Dries Bonte, Jesse R Bragger, Cristina Branquinho, Kristien I Brans, Jorge C Bresciano, Peta D Brom, Anna Bucharova, Briana Burt, James F Cahill, Katelyn D Campbell, Elizabeth J Carlen, Diego Carmona, Maria Clara Castellanos, Giada Centenaro, Izan Chalen, Jaime A Chaves, Mariana Chávez-Pesqueira, Xiao-Yong Chen, Angela M Chilton, Kristina M Chomiak, Diego F Cisneros-Heredia, Ibrahim K Cisse, Aimée T Classen, Mattheau S Comerford, Camila Cordoba Fradinger, Hannah Corney, Andrew J Crawford, Kerri M Crawford, Maxime Dahirel, Santiago David, Robert De Haan, Nicholas J Deacon, Clare Dean, Ek Del-Val, Eleftherios K Deligiannis, Derek Denney, Margarete A Dettlaff, Michelle F DiLeo, Yuan-Yuan Ding, Moisés E Domínguez-López, Davide M Dominoni, Savannah L Draud, Karen Dyson, Jacintha Ellers, Carlos I Espinosa, Liliana Essi, Mohsen Falahati-Anbaran, Jéssica C F Falcão, Hayden T Fargo, Mark D E Fellowes, Raina M Fitzpatrick, Leah E Flaherty, Pádraic J Flood, María F Flores, Juan Fornoni, Amy G Foster, Christopher J Frost, Tracy L Fuentes, Justin R Fulkerson, Edeline Gagnon, Frauke Garbsch, Colin J Garroway, Aleeza C Gerstein, Mischa M Giasson, E Binney Girdler, Spyros Gkelis, William Godsoe, Anneke M Golemiec, Mireille Golemiec, César González-Lagos, Amanda J Gorton, Kiyoko M Gotanda, Gustaf Granath, Stephan Greiner, Joanna S Griffiths, Filipa Grilo, Pedro E Gundel, Benjamin Hamilton, Joyce M Hardin, Tianhua He, Stephen B Heard, André F Henriques, Melissa Hernández-Poveda, Molly C Hetherington-Rauth, Sarah J Hill, Dieter F Hochuli, Kathryn A Hodgins, Glen R Hood, Gareth R Hopkins, Katherine A Hovanes, Ava R Howard, Sierra C Hubbard, Carlos N Ibarra-Cerdeña, Carlos Iñiguez-Armijos, Paola Jara-Arancio, Benjamin J M Jarrett, Manon Jeannot, Vania Jiménez-Lobato, Mae Johnson, Oscar Johnson, Philip P Johnson, Reagan Johnson, Matthew P Josephson, Meen Chel Jung, Michael G Just, Aapo Kahilainen, Otto S Kailing, Eunice Kariñho-Betancourt, Regina Karousou, Lauren A Kirn, Anna Kirschbaum, Anna-Liisa Laine, Jalene M LaMontagne, Christian Lampei, Carlos Lara, Erica L Larson, Adrián Lázaro-Lobo, Jennifer H Le, Deleon S Leandro, Christopher Lee, Yunting Lei, Carolina A León, Manuel E Lequerica Tamara, Danica C Levesque, Wan-Jin Liao, Megan Ljubotina, Hannah Locke, Martin T Lockett, Tiffany C Longo, Jeremy T Lundholm, Thomas MacGillavry, Christopher R Mackin, Alex R Mahmoud, Isaac A Manju, Janine Mariën, D Nayeli Martínez, Marina Martínez-Bartolomé, Emily K Meineke, Wendy Mendoza-Arroyo, Thomas J S Merritt, Lila Elizabeth L Merritt, Giuditta Migiani, Emily S Minor, Nora Mitchell, Mitra Mohammadi Bazargani, Angela T Moles, Julia D Monk, Christopher M Moore, Paula A Morales-Morales, Brook T Moyers, Miriam Muñoz-Rojas, Jason Munshi-South, Shannon M Murphy, Maureen M Murúa, Melisa Neila, Ourania Nikolaidis, Iva Njunjić, Peter Nosko, Juan Núñez-Farfán, Takayuki Ohgushi, Kenneth M Olsen, Øystein H Opedal, Cristina Ornelas, Amy L Parachnowitsch, Aaron S Paratore, Angela M Parody-Merino, Juraj Paule, Octávio S Paulo, João Carlos Pena, Vera W Pfeiffer, Pedro Pinho, Anthony Piot, Ilga M Porth, Nicholas Poulos, Adriana Puentes, Jiao Qu, Estela Quintero-Vallejo, Steve M Raciti, Joost A M Raeymaekers, Krista M Raveala, Diana J Rennison, Milton C Ribeiro, Jonathan L Richardson, Gonzalo Rivas-Torres, Benjamin J Rivera, Adam B Roddy, Erika Rodriguez-Muñoz, José Raúl Román, Laura S Rossi, Jennifer K Rowntree, Travis J Ryan, Santiago Salinas, Nathan J Sanders, Luis Y Santiago-Rosario, Amy M Savage, J F Scheepens, Menno Schilthuizen, Adam C Schneider, Tiffany Scholier, Jared L Scott, Summer A Shaheed, Richard P Shefferson, Caralee A Shepard, Jacqui A Shykoff, Georgianna Silveira, Alexis D Smith, Lizet Solis-Gabriel, Antonella Soro, Katie V Spellman, Kaitlin Stack Whitney, Indra Starke-Ottich, Jörg G Stephan, Jessica D Stephens, Justyna Szulc, Marta Szulkin, Ayco J M Tack, Ítalo Tamburrino, Tayler D Tate, Emmanuel Tergemina, Panagiotis Theodorou, Ken A Thompson, Caragh G Threlfall, Robin M Tinghitella, Lilibeth Toledo-Chelala, Xin Tong, Léa Uroy, Shunsuke Utsumi, Martijn L Vandegehuchte, Acer VanWallendael, Paula M Vidal, Susana M Wadgymar, Ai-Ying Wang, Nian Wang, Montana L Warbrick, Kenneth D Whitney, Miriam Wiesmeier, J Tristian Wiles, Jianqiang Wu, Zoe A Xirocostas, Zhaogui Yan, Jiahe Yao, Jeremy B Yoder, Owen Yoshida, Jingxiong Zhang, Zhigang Zhao, Carly D Ziter, Matthew P Zuellig, Rebecca A Zufall, Juan E Zurita, Sharon E Zytynska, Marc T J Johnson	Science (New York, N.Y.)	2022-03-17	Abstract
What If Not All Metabolites from the Uremic Toxin Generating Pathways Are Toxic? A Hypothesis.	Raymond Vanholder, Sanjay K Nigam, Stéphane Burtey, Griet Glorieux	Toxins	2022-03-17	Abstract
Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases.	George Armstrong, Cameron Martino, Justin Morris, Behnam Khaleghi, Jaeyoung Kang, Jeff DeReus, Qiyun Zhu, Daniel Roush, Daniel McDonald, Antonio Gonazlez, Justin P Shaffer, Carolina Carpenter, Mehrbod Estaki, Stephen Wandro, Sean Eilert, Ameen Akel, Justin Eno, Ken Curewitz, Austin D Swafford, Niema Moshiri, Tajana Rosing, Rob Knight	MSystems	2022-03-16	Abstract
Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides.	Gajender Aleti, Jordan N Kohn, Emily A Troyer, Kelly Weldon, Shi Huang, Anupriya Tripathi, Pieter C Dorrestein, Austin D Swafford, Rob Knight, Suzi Hong	BMC Microbiology	2022-03-14	Abstract
Autoantibodies Against Proteins Previously Associated With Autoimmunity in Adult and Pediatric Patients With COVID-19 and Children With MIS-C.	Peter D Burbelo, Riccardo Castagnoli, Chisato Shimizu, Ottavia M Delmonte, Kerry Dobbs, Valentina Discepolo, Andrea Lo Vecchio, Alfredo Guarino, Francesco Licciardi, Ugo Ramenghi, Emma Rey-Jurado, Cecilia Vial, Gian Luigi Marseglia, Amelia Licari, Daniela Montagna, Camillo Rossi, Gina A Montealegre Sanchez, Karyl Barron, Blake M Warner, John A Chiorini, Yazmin Espinosa, Loreani Noguera, Lesia Dropulic, Meng Truong, Dana Gerstbacher, Sayonara Mató, John Kanegaye, Adriana H Tremoulet, , Eli M Eisenstein, Helen C Su, Luisa Imberti, Maria Cecilia Poli, Jane C Burns, Luigi D Notarangelo, Jeffrey I Cohen	Frontiers In Immunology	2022-03-11	Abstract
Structure and Candidate Biosynthetic Gene Cluster of a Manumycin-Type Metabolite from .	Gabriel Castro-Falcón, Kaitlin E Creamer, Alexander B Chase, Min Cheol Kim, Douglas Sweeney, Evgenia Glukhov, William Fenical, Paul R Jensen	Journal Of Natural Products	2022-03-09	Abstract
Cancer's second genome: Microbial cancer diagnostics and redefining clonal evolution as a multispecies process: Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution: Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution.	Gregory D Sepich-Poore, Caitlin Guccione, Lucie Laplane, Thomas Pradeu, Kit Curtius, Rob Knight	BioEssays : News And Reviews In Molecular, Cellular And Developmental Biology	2022-03-06	Abstract
Human Milk Oligosaccharides and Bacterial Profile Modulate Infant Body Composition during Exclusive Breastfeeding.	Ali S Cheema, Zoya Gridneva, Annalee J Furst, Ana S Roman, Michelle L Trevenen, Berwin A Turlach, Ching T Lai, Lisa F Stinson, Lars Bode, Matthew S Payne, Donna T Geddes	International Journal Of Molecular Sciences	2022-03-05	Abstract
Exclusively Breastfed Infant Microbiota Develops over Time and Is Associated with Human Milk Oligosaccharide Intakes.	Ali Sadiq Cheema, Michelle Louise Trevenen, Berwin Ashoka Turlach, Annalee June Furst, Ana Sophia Roman, Lars Bode, Zoya Gridneva, Ching Tat Lai, Lisa Faye Stinson, Matthew Scott Payne, Donna Tracy Geddes	International Journal Of Molecular Sciences	2022-03-03	Abstract
Landscape of HIV neutralization susceptibilities across tissue reservoirs.	Chuangqi Wang, Timothy E Schlub, Wen-Han Yu, C Sabrina Tan, Karl Stefic, Sara Gianella, Davey M Smith, Douglas A Lauffenburger, Antoine Chaillon, Boris Julg	Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America	2022-03-02	Abstract
Detection of COVID-19 using multimodal data from a wearable device: results from the first TemPredict Study.	Ashley E Mason, Frederick M Hecht, Shakti K Davis, Joseph L Natale, Wendy Hartogensis, Natalie Damaso, Kajal T Claypool, Stephan Dilchert, Subhasis Dasgupta, Shweta Purawat, Varun K Viswanath, Amit Klein, Anoushka Chowdhary, Sarah M Fisher, Claudine Anglo, Karena Y Puldon, Danou Veasna, Jenifer G Prather, Leena S Pandya, Lindsey M Fox, Michael Busch, Casey Giordano, Brittany K Mercado, Jining Song, Rafael Jaimes, Brian S Baum, Brian A Telfer, Casandra W Philipson, Paula P Collins, Adam A Rao, Edward J Wang, Rachel H Bandi, Bianca J Choe, Elissa S Epel, Stephen K Epstein, Joanne B Krasnoff, Marco B Lee, Shi-Wen Lee, Gina M Lopez, Arpan Mehta, Laura D Melville, Tiffany S Moon, Lilianne R Mujica-Parodi, Kimberly M Noel, Michael A Orosco, Jesse M Rideout, Janet D Robishaw, Robert M Rodriguez, Kaushal H Shah, Jonathan H Siegal, Amarnath Gupta, Ilkay Altintas, Benjamin L Smarr	Scientific Reports	2022-03-02	Abstract
Immune Response of an Oral Phage Cocktail in a Mouse Model of Ethanol-Induced Liver Disease.	Beatriz Garcia Mendes, Yi Duan, Bernd Schnabl	Viruses	2022-02-27	Abstract
System-Level Analysis of Transcriptional and Translational Regulatory Elements in .	Soonkyu Hwang, Namil Lee, Donghui Choe, Yongjae Lee, Woori Kim, Ji Hun Kim, Gahyeon Kim, Hyeseong Kim, Neung-Ho Ahn, Byoung-Hee Lee, Bernhard O Palsson, Byung-Kwan Cho	Frontiers In Bioengineering And Biotechnology	2022-02-25	Abstract
The Microbiota-Gut-Brain Axis in Alzheimer's Disease: A Review of Taxonomic Alterations and Potential Avenues for Interventions.	Emily R Murray, Mylon Kemp, Tanya T Nguyen	Archives Of Clinical Neuropsychology : The Official Journal Of The National Academy Of Neuropsychologists	2022-02-24	Abstract
viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data.	Dmitry Antipov, Mikhail Rayko, Mikhail Kolmogorov, Pavel A Pevzner	Genome Biology	2022-02-21	Abstract
Deoxyvasicinone with Anti-Melanogenic Activity from Marine-Derived sp. CNQ-617.	Se-Eun Lee, Min-Ju Kim, Prima F Hillman, Dong-Chan Oh, William Fenical, Sang-Jip Nam, Kyung-Min Lim	Marine Drugs	2022-02-21	Abstract
Viral protein instability enhances host-range evolvability.	Hannah M Strobel, Elijah K Horwitz, Justin R Meyer	PLoS Genetics	2022-02-17	Abstract
Intestinal secretory mechanisms and diarrhea.	Stephen Joseph Keely, Kim E Barrett	American Journal Of Physiology. Gastrointestinal And Liver Physiology	2022-02-16	Abstract
Antimicrobial production by perifollicular dermal preadipocytes is essential to the pathophysiology of acne.	Alan M O'Neill, Marc C Liggins, Jason S Seidman, Tran H Do, Fengwu Li, Kellen J Cavagnero, Tatsuya Dokoshi, Joyce Y Cheng, Faiza Shafiq, Tissa R Hata, Johann E Gudjonsson, Robert L Modlin, Richard L Gallo	Science Translational Medicine	2022-02-16	Abstract
Higher buccal mitochondrial DNA and mitochondrial common deletion number are associated with markers of neurodegeneration and inflammation in cerebrospinal fluid.	Dipesh Solanky, Jerel A Fields, Jennifer E Iudicello, Ronald J Ellis, Donald Franklin, David B Clifford, Benjamin B Gelman, Christina M Marra, Susan Morgello, Leah H Rubin, Igor Grant, Robert K Heaton, Scott L Letendre, Sanjay R Mehta	Journal Of Neurovirology	2022-02-14	Abstract
A gut-derived metabolite alters brain activity and anxiety behaviour in mice.	Brittany D Needham, Masanori Funabashi, Mark D Adame, Zhuo Wang, Joseph C Boktor, Jillian Haney, Wei-Li Wu, Claire Rabut, Mark S Ladinsky, Son-Jong Hwang, Yumei Guo, Qiyun Zhu, Jessica A Griffiths, Rob Knight, Pamela J Bjorkman, Mikhail G Shapiro, Daniel H Geschwind, Daniel P Holschneider, Michael A Fischbach, Sarkis K Mazmanian	Nature	2022-02-14	Abstract
Adaptive laboratory evolution in S. cerevisiae highlights role of transcription factors in fungal xenobiotic resistance.	Sabine Ottilie, Madeline R Luth, Erich Hellemann, Gregory M Goldgof, Eddy Vigil, Prianka Kumar, Andrea L Cheung, Miranda Song, Karla P Godinez-Macias, Krypton Carolino, Jennifer Yang, Gisel Lopez, Matthew Abraham, Maureen Tarsio, Emmanuelle LeBlanc, Luke Whitesell, Jake Schenken, Felicia Gunawan, Reysha Patel, Joshua Smith, Melissa S Love, Roy M Williams, Case W McNamara, William H Gerwick, Trey Ideker, Yo Suzuki, Dyann F Wirth, Amanda K Lukens, Patricia M Kane, Leah E Cowen, Jacob D Durrant, Elizabeth A Winzeler	Communications Biology	2022-02-11	Abstract
From Tryptophan to Toxin: Nature's Convergent Biosynthetic Strategy to Aetokthonotoxin.	Sanjoy Adak, April L Lukowski, Rebecca J B Schäfer, Bradley S Moore	Journal Of The American Chemical Society	2022-02-10	Abstract
Efficient in vitro and in vivo RNA editing via recruitment of endogenous ADARs using circular guide RNAs.	Dhruva Katrekar, James Yen, Yichen Xiang, Anushka Saha, Dario Meluzzi, Yiannis Savva, Prashant Mali	Nature Biotechnology	2022-02-10	Abstract
Machine Learning Predicts Biogeochemistry from Microbial Community Structure in a Complex Model System.	Avishek Dutta, Thomas Goldman, Jeffrey Keating, Ellen Burke, Nicole Williamson, Reinhard Dirmeier, Jeff S Bowman	Microbiology Spectrum	2022-02-09	Abstract
Development of a T cell-based immunodiagnostic system to effectively distinguish SARS-CoV-2 infection and COVID-19 vaccination status.	Esther Dawen Yu, Eric Wang, Emily Garrigan, Benjamin Goodwin, Aaron Sutherland, Alison Tarke, James Chang, Rosa Isela Gálvez, Jose Mateus, Sydney I Ramirez, Stephen A Rawlings, Davey M Smith, Gilberto Filaci, April Frazier, Daniela Weiskopf, Jennifer M Dan, Shane Crotty, Alba Grifoni, Alessandro Sette, Ricardo da Silva Antunes	Cell Host & Microbe	2022-02-08	Abstract
Targeted isolation of panels of diverse human protective broadly neutralizing antibodies against SARS-like viruses.	Wan-Ting He, Rami Musharrafieh, Ge Song, Katharina Dueker, Longping V Tse, David R Martinez, Alexandra Schäfer, Sean Callaghan, Peter Yong, Nathan Beutler, Jonathan L Torres, Reid M Volk, Panpan Zhou, Meng Yuan, Hejuni Liu, Fabio Anzanello, Tazio Capozzola, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, Ian A Wilson, Yana Safonova, Andrew B Ward, Thomas F Rogers, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees Andrabi	BioRxiv : The Preprint Server For Biology	2022-02-08	Abstract
A human antibody reveals a conserved site on beta-coronavirus spike proteins and confers protection against SARS-CoV-2 infection.	Panpan Zhou, Meng Yuan, Ge Song, Nathan Beutler, Namir Shaabani, Deli Huang, Wan-Ting He, Xueyong Zhu, Sean Callaghan, Peter Yong, Fabio Anzanello, Linghang Peng, James Ricketts, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, David Nemazee, John R Teijaro, Thomas F Rogers, Ian A Wilson, Dennis R Burton, Raiees Andrabi	Science Translational Medicine	2022-02-08	Abstract
Regulatory perturbations of ribosome allocation in bacteria reshape the growth proteome with a trade-off in adaptation capacity.	David Hidalgo, César A Martínez-Ortiz, Bernhard O Palsson, José I Jiménez, José Utrilla	IScience	2022-02-07	Abstract
Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Youwen Qin, Aki S Havulinna, Yang Liu, Pekka Jousilahti, Scott C Ritchie, Alex Tokolyi, Jon G Sanders, Liisa Valsta, Marta Brożyńska, Qiyun Zhu, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Rohit Loomba, Susan Cheng, Mohit Jain, Teemu Niiranen, Leo Lahti, Rob Knight, Veikko Salomaa, Michael Inouye, Guillaume Méric	Nature Genetics	2022-02-03	Abstract
A potentially probiotic strain of Enterococcus faecalis from human milk that is avirulent, antibiotic sensitive, and nonbreaching of the gut barrier.	Jasia Anjum, Arsalan Zaidi, Kim Barrett, Muhammad Tariq	Archives Of Microbiology	2022-02-02	Abstract
Flux balance analysis of the ammonia-oxidizing bacterium Nitrosomonas europaea ATCC19718 unravels specific metabolic activities while degrading toxic compounds.	Gabriela Canto-Encalada, Diego Tec-Campos, Juan D Tibocha-Bonilla, Karsten Zengler, Alejandro Zepeda, Cristal Zuñiga	PLoS Computational Biology	2022-02-02	Abstract
Salmonella respiration turns the tables on propionate.	Gregory T Walker, Manuela Raffatellu	Trends In Microbiology	2022-02-02	Abstract
Editorial: Mast Cells: Bridging Host-Microorganism Interactions.	Rommel Chacón-Salinas, Anna Di Nardo, Soman N Abraham	Frontiers In Immunology	2022-01-31	Abstract
Gut Microbiome Composition Is Predictive of Incident Type 2 Diabetes in a Population Cohort of 5,572 Finnish Adults.	Matti O Ruuskanen, Pande P Erawijantari, Aki S Havulinna, Yang Liu, Guillaume Méric, Jaakko Tuomilehto, Michael Inouye, Pekka Jousilahti, Veikko Salomaa, Mohit Jain, Rob Knight, Leo Lahti, Teemu J Niiranen	Diabetes Care	2022-01-31	Abstract
Identification of Leucinostatins from sp. as Antiparasitic Agents against .	Jean A Bernatchez, Yun-Seo Kil, Elany Barbosa da Silva, Diane Thomas, Laura-Isobel McCall, Karen L Wendt, Julia M Souza, Jasmin Ackermann, James H McKerrow, Robert H Cichewicz, Jair L Siqueira-Neto	ACS Omega	2022-01-28	Abstract
Leapfrog dynamics in phage-bacteria coevolution revealed by joint analysis of cross-infection phenotypes and whole genome sequencing.	Animesh Gupta, Shengyun Peng, Chung Yin Leung, Joshua M Borin, Sarah J Medina, Joshua S Weitz, Justin R Meyer	Ecology Letters	2022-01-28	Abstract
Accumulation of microbial DNAs promotes to islet inflammation and β cell abnormalities in obesity in mice.	Hong Gao, Zhenlong Luo, Yudong Ji, Kechun Tang, Zhongmou Jin, Crystal Ly, Dorothy D Sears, Sushil Mahata, Wei Ying	Nature Communications	2022-01-28	Abstract
Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity.	Robert H Mills, Parambir S Dulai, Yoshiki Vázquez-Baeza, Consuelo Sauceda, Noëmie Daniel, Romana R Gerner, Lakshmi E Batachari, Mario Malfavon, Qiyun Zhu, Kelly Weldon, Greg Humphrey, Marvic Carrillo-Terrazas, Lindsay DeRight Goldasich, MacKenzie Bryant, Manuela Raffatellu, Robert A Quinn, Andrew T Gewirtz, Benoit Chassaing, Hiutung Chu, William J Sandborn, Pieter C Dorrestein, Rob Knight, David J Gonzalez	Nature Microbiology	2022-01-27	Abstract
Predicting fungal infection rate and severity with skin-associated microbial communities on amphibians.	Melissa Y Chen, Jordan G Kueneman, Antonio González, Greg Humphrey, Rob Knight, Valerie J McKenzie	Molecular Ecology	2022-01-25	Abstract
Interactions between human milk oligosaccharides, microbiota and immune factors in milk of women with and without mastitis.	Irma Castro, Cristina García-Carral, Annalee Furst, Sadaf Khwajazada, Janneiry García, Rebeca Arroyo, Lorena Ruiz, Juan M Rodríguez, Lars Bode, Leónides Fernández	Scientific Reports	2022-01-25	Abstract
SARS-CoV-2 vaccination induces immunological T cell memory able to cross-recognize variants from Alpha to Omicron.	Alison Tarke, Camila H Coelho, Zeli Zhang, Jennifer M Dan, Esther Dawen Yu, Nils Methot, Nathaniel I Bloom, Benjamin Goodwin, Elizabeth Phillips, Simon Mallal, John Sidney, Gilberto Filaci, Daniela Weiskopf, Ricardo da Silva Antunes, Shane Crotty, Alba Grifoni, Alessandro Sette	Cell	2022-01-24	Abstract
Stenotrophomonas maltophilia in patients with bronchiectasis: An analysis of the US bronchiectasis and NTM Research Registry.	Mark L Metersky, Radmila Choate, Timothy R Aksamit, Douglas Conrad, Nicole C Lapinel, Diego J Maselli, Pamela J McShane	Respiratory Medicine	2022-01-24	Abstract
Colesevelam ameliorates non-alcoholic steatohepatitis and obesity in mice.	Phillipp Hartmann, Yi Duan, Yukiko Miyamoto, Münevver Demir, Sonja Lang, Elda Hasa, Patrick Stern, Dennis Yamashita, Mary Conrad, Lars Eckmann, Bernd Schnabl	Hepatology International	2022-01-24	Abstract
Genome-scale analysis of genetic regulatory elements in Streptomyces avermitilis MA-4680 using transcript boundary information.	Yongjae Lee, Namil Lee, Soonkyu Hwang, Woori Kim, Suhyung Cho, Bernhard O Palsson, Byung-Kwan Cho	BMC Genomics	2022-01-21	Abstract
Isolation and characterization of Streptomyces bacteriophages and Streptomyces strains encoding biosynthetic arsenals.	Elizabeth T Montaño, Jason F Nideffer, Lauren Brumage, Marcella Erb, Julia Busch, Lynley Fernandez, Alan I Derman, John Paul Davis, Elena Estrada, Sharon Fu, Danielle Le, Aishwarya Vuppala, Cassidy Tran, Elaine Luterstein, Shivani Lakkaraju, Sriya Panchagnula, Caroline Ren, Jennifer Doan, Sharon Tran, Jamielyn Soriano, Yuya Fujita, Pranathi Gutala, Quinn Fujii, Minda Lee, Anthony Bui, Carleen Villarreal, Samuel R Shing, Sean Kim, Danielle Freeman, Vipula Racha, Alicia Ho, Prianka Kumar, Kian Falah, Thomas Dawson, Eray Enustun, Amy Prichard, Ana Gomez, Kanika Khanna, Shelly Trigg, Kit Pogliano, Joe Pogliano	PloS One	2022-01-21	Abstract
Ethical Considerations for Gene Drive: Challenges of Balancing Inclusion, Power and Perspectives.	Ana Kormos, Gregory C Lanzaro, Ethan Bier, Vanilson Santos, Lodney Nazaré, João Pinto, Adionilde Aguiar Dos Santos, Anthony A James	Frontiers In Bioengineering And Biotechnology	2022-01-21	Abstract
A human antibody reveals a conserved site on beta-coronavirus spike proteins and confers protection against SARS-CoV-2 infection.	Panpan Zhou, Meng Yuan, Ge Song, Nathan Beutler, Namir Shaabani, Deli Huang, Wan-Ting He, Xueyong Zhu, Sean Callaghan, Peter Yong, Fabio Anzanello, Linghang Peng, James Ricketts, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, David Nemazee, John R Teijaro, Thomas F Rogers, Ian A Wilson, Dennis R Burton, Raiees Andrabi	BioRxiv : The Preprint Server For Biology	2022-01-21	Abstract
No infectious SARS-CoV-2 in breast milk from a cohort of 110 lactating women.	Paul Krogstad, Deisy Contreras, Hwee Ng, Nicole Tobin, Christina D Chambers, Kerri Bertrand, Lars Bode, Grace M Aldrovandi	Pediatric Research	2022-01-19	Abstract
From structure to sequence: Antibody discovery using cryoEM.	Aleksandar Antanasijevic, Charles A Bowman, Robert N Kirchdoerfer, Christopher A Cottrell, Gabriel Ozorowski, Amit A Upadhyay, Kimberly M Cirelli, Diane G Carnathan, Chiamaka A Enemuo, Leigh M Sewall, Bartek Nogal, Fangzhu Zhao, Bettina Groschel, William R Schief, Devin Sok, Guido Silvestri, Shane Crotty, Steven E Bosinger, Andrew B Ward	Science Advances	2022-01-19	Abstract
Why sequence all eukaryotes?	Mark Blaxter, John M Archibald, Anna K Childers, Jonathan A Coddington, Keith A Crandall, Federica Di Palma, Richard Durbin, Scott V Edwards, Jennifer A M Graves, Kevin J Hackett, Neil Hall, Erich D Jarvis, Rebecca N Johnson, Elinor K Karlsson, W John Kress, Shigehiro Kuraku, Mara K N Lawniczak, Kerstin Lindblad-Toh, Jose V Lopez, Nancy A Moran, Gene E Robinson, Oliver A Ryder, Beth Shapiro, Pamela S Soltis, Tandy Warnow, Guojie Zhang, Harris A Lewin	Proceedings Of The National Academy Of Sciences Of The United States Of America	2022-01-19	Abstract
The Earth BioGenome Project 2020: Starting the clock.	Harris A Lewin, Stephen Richards, Erez Lieberman Aiden, Miguel L Allende, John M Archibald, Miklós Bálint, Katharine B Barker, Bridget Baumgartner, Katherine Belov, Giorgio Bertorelle, Mark L Blaxter, Jing Cai, Nicolette D Caperello, Keith Carlson, Juan Carlos Castilla-Rubio, Shu-Miaw Chaw, Lei Chen, Anna K Childers, Jonathan A Coddington, Dalia A Conde, Montserrat Corominas, Keith A Crandall, Andrew J Crawford, Federica DiPalma, Richard Durbin, ThankGod E Ebenezer, Scott V Edwards, Olivier Fedrigo, Paul Flicek, Giulio Formenti, Richard A Gibbs, M Thomas P Gilbert, Melissa M Goldstein, Jennifer Marshall Graves, Henry T Greely, Igor V Grigoriev, Kevin J Hackett, Neil Hall, David Haussler, Kristofer M Helgen, Carolyn J Hogg, Sachiko Isobe, Kjetill Sigurd Jakobsen, Axel Janke, Erich D Jarvis, Warren E Johnson, Steven J M Jones, Elinor K Karlsson, Paul J Kersey, Jin-Hyoung Kim, W John Kress, Shigehiro Kuraku, Mara K N Lawniczak, James H Leebens-Mack, Xueyan Li, Kerstin Lindblad-Toh, Xin Liu, Jose V Lopez, Tomas Marques-Bonet, Sophie Mazard, Jonna A K Mazet, Camila J Mazzoni, Eugene W Myers, Rachel J O'Neill, Sadye Paez, Hyun Park, Gene E Robinson, Cristina Roquet, Oliver A Ryder, Jamal S M Sabir, H Bradley Shaffer, Timothy M Shank, Jacob S Sherkow, Pamela S Soltis, Boping Tang, Leho Tedersoo, Marcela Uliano-Silva, Kun Wang, Xiaofeng Wei, Regina Wetzer, Julia L Wilson, Xun Xu, Huanming Yang, Anne D Yoder, Guojie Zhang	Proceedings Of The National Academy Of Sciences Of The United States Of America	2022-01-19	Abstract
Correction to: Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers.	Qiyun Zhu, Qiangchuan Hou, Shi Huang, Qianying Ou, Dongxue Huo, Yoshiki Vázquez-Baeza, Chaoping Cen, Victor Cantu, Mehrbod Estaki, Haibo Chang, Pedro Belda-Ferre, Ho-Cheol Kim, Kaining Chen, Rob Knight, Jiachao Zhang	The ISME Journal	2022-01-18	Abstract
Considerations for the Use of Phage Therapy in Clinical Practice.	Gina A Suh, Thomas P Lodise, Pranita D Tamma, Jane M Knisely, Jose Alexander, Saima Aslam, Karen D Barton, Erica Bizzell, Katherine M C Totten, Joseph Campbell, Benjamin K Chan, Scott A Cunningham, Katherine E Goodman, Kerryl Greenwood-Quaintance, Anthony D Harris, Shayla Hesse, Anthony Maresso, Veronique Nussenblatt, David Pride, Michael Rybak, Zoe Sund, David Van Duin, Daria Van Tyne, Robin Patel,	Antimicrobial Agents And Chemotherapy	2022-01-18	Abstract
Liver specific, systemic and genetic contributors to alcohol-related liver disease progression.	Bernd Schnabl, Gavin E Arteel, Felix Stickel, Jan Hengstler, Nachiket Vartak, Ahmed Ghallab, Steven Dooley, Yujia Li, Robert F Schwabe	Zeitschrift Fur Gastroenterologie	2022-01-18	Abstract
Neuronally-enriched exosomal microRNA-27b mediates acute effects of ibuprofen on reward-related brain activity in healthy adults: a randomized, placebo-controlled, double-blind trial.	Kaiping Burrows, Leandra K Figueroa-Hall, Rayus Kuplicki, Jennifer L Stewart, Ahlam M Alarbi, Rajagopal Ramesh, Jonathan B Savitz, T Kent Teague, Victoria B Risbrough, Martin P Paulus	Scientific Reports	2022-01-17	Abstract
Conceptual strategies for characterizing interactions in microbial communities.	Sho M Kodera, Promi Das, Jack A Gilbert, Holly L Lutz	IScience	2022-01-15	Abstract
A Charge-Switchable Zwitterionic Peptide for Rapid Detection of SARS-CoV-2 Main Protease.	Zhicheng Jin, Yash Mantri, Maurice Retout, Yong Cheng, Jiajing Zhou, Alec Jorns, Pavla Fajtova, Wonjun Yim, Colman Moore, Ming Xu, Matthew N Creyer, Raina M Borum, Jingcheng Zhou, Zhuohong Wu, Tengyu He, William F Penny, Anthony J O'Donoghue, Jesse V Jokerst	Angewandte Chemie (International Ed. In English)	2022-01-14	Abstract
A Dual-Color Fluorescent Probe Allows Simultaneous Imaging of Main and Papain-like Proteases of SARS-CoV-2-Infected Cells for Accurate Detection and Rapid Inhibitor Screening.	Yong Cheng, Raina M Borum, Alex E Clark, Zhicheng Jin, Colman Moore, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Jesse V Jokerst	Angewandte Chemie (International Ed. In English)	2022-01-14	Abstract
Gestational insulin resistance is mediated by the gut microbiome-indoleamine 2,3-dioxygenase axis.	Medha Priyadarshini, Guadalupe Navarro, Derek J Reiman, Anukriti Sharma, Kai Xu, Kristen Lednovich, Christopher R Manzella, Md Wasim Khan, Mariana Salas Garcia, Sarah Allard, Barton Wicksteed, George E Chlipala, Barbara Szynal, Beatriz Penalver Bernabe, Pauline M Maki, Ravinder K Gill, Gary H Perdew, Jack Gilbert, Yang Dai, Brian T Layden	Gastroenterology	2022-01-12	Abstract
Structure and dynamics of SARS-CoV-2 proofreading exoribonuclease ExoN.	Nicholas H Moeller, Ke Shi, Özlem Demir, Christopher Belica, Surajit Banerjee, Lulu Yin, Cameron Durfee, Rommie E Amaro, Hideki Aihara	Proceedings Of The National Academy Of Sciences Of The United States Of America	2022-01-11	Abstract
Comparison of the First and Second Waves of the Coronavirus Disease 2019 Pandemic in Children and Adolescents in a Middle-Income Country: Clinical Impact Associated with Severe Acute Respiratory Syndrome Coronavirus 2 Gamma Lineage.	Eduardo A Oliveira, Ana Cristina Simões E Silva, Maria Christina L Oliveira, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Debora M Miranda, Daniella B Martelli, Ludmila R Silva, Clara C Pinhati, Hercílio Martelli-Júnior	The Journal Of Pediatrics	2022-01-11	Abstract
The transcription factor ZIP-1 promotes resistance to intracellular infection in Caenorhabditis elegans.	Vladimir Lažetić, Fengting Wu, Lianne B Cohen, Kirthi C Reddy, Ya-Ting Chang, Spencer S Gang, Gira Bhabha, Emily R Troemel	Nature Communications	2022-01-10	Abstract
Inhibition of histamine accumulation by novel histamine-degrading species of sp. isolated from goats and sheep milk.	Safoora Pashangeh, Seyed Shahram Shekarforoush, Mahmoud Aminlari, Saeid Hosseinzadeh, Victor Nizet, Samira Dahesh, Samane Rahmdel	Food Science & Nutrition	2022-01-09	Abstract
Comparative Analysis of T Cell Spatial Proteomics and the Influence of HIV Expression.	Aaron L Oom, Charlotte A Stoneham, Mary K Lewinski, Alicia Richards, Jacob M Wozniak, Km Shams-Ud-Doha, David J Gonzalez, Nevan J Krogan, John Guatelli	Molecular & Cellular Proteomics : MCP	2022-01-08	Abstract
Roles for the Mycobiome in Liver Disease.	Suling Zeng, Bernd Schnabl	Liver International : Official Journal Of The International Association For The Study Of The Liver	2022-01-07	Abstract
An intestinally secreted host factor promotes microsporidia invasion of .	Hala Tamim El Jarkass, Calvin Mok, Michael R Schertzberg, Andrew G Fraser, Emily R Troemel, Aaron W Reinke	ELife	2022-01-07	Abstract
Disparities in telemedicine during COVID-19.	Alexander S Qian, Melody K Schiaffino, Vinit Nalawade, Lara Aziz, Fernanda V Pacheco, Bao Nguyen, Peter Vu, Sandip P Patel, Maria Elena Martinez, James D Murphy	Cancer Medicine	2022-01-05	Abstract
Human Milk Oligosaccharides Reduce Murine Group B Vaginal Colonization with Minimal Impact on the Vaginal Microbiota.	Marlyd E Mejia, Samantha Ottinger, Alison Vrbanac, Priyanka Babu, Jacob J Zulk, David Moorshead, Lars Bode, Victor Nizet, Kathryn A Patras	MSphere	2022-01-05	Abstract
Machine Learning Applied to Omics Datasets Predicts Mortality in Patients with Alcoholic Hepatitis.	Bei Gao, Tsung-Chin Wu, Sonja Lang, Lu Jiang, Yi Duan, Derrick E Fouts, Xinlian Zhang, Xin-Ming Tu, Bernd Schnabl	Metabolites	2022-01-05	Abstract
Pediatric Osteoarticular Infections Caused by Mycobacteria Tuberculosis Complex: A 26-Year Review of Cases in San Diego, CA.	Ian Drobish, Nanda Ramchandar, Vanessa Raabe, Alice Pong, John Bradley, Christopher Cannavino	The Pediatric Infectious Disease Journal	2022-01-03	Abstract
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities.	Derek M Bickhart, Mikhail Kolmogorov, Elizabeth Tseng, Daniel M Portik, Anton Korobeynikov, Ivan Tolstoganov, Gherman Uritskiy, Ivan Liachko, Shawn T Sullivan, Sung Bong Shin, Alvah Zorea, Victòria Pascal Andreu, Kevin Panke-Buisse, Marnix H Medema, Itzhak Mizrahi, Pavel A Pevzner, Timothy P L Smith	Nature Biotechnology	2022-01-03	Abstract
Chlororesistoflavins A and B, Chlorinated Benzopyrene Antibiotics Produced by the Marine-Derived Actinomycete sp. Strain EG32.	Min Cheol Kim, Zhifei Li, Reiko Cullum, Tadeusz F Molinski, Mennat Allah G Eid, Ali M S Hebishy, Ahmed H I Faraag, Ahmed E Abdel Moneim, Mohamed S Abdelfattah, William Fenical	Journal Of Natural Products	2021-12-30	Abstract
Possibilities and limits for using the gut microbiome to improve captive animal health.	Jessica Diaz, Aspen T Reese	Animal Microbiome	2021-12-29	Abstract
Saccharobisindole, Neoasterric Methyl Ester, and 7-Chloro-4(1H)-quinolone: Three New Compounds Isolated from the Marine Bacterium sp.	Sohee Kim, Tu Cam Le, Sang-Ah Han, Prima F Hillman, Ahreum Hong, Sunghoon Hwang, Young Eun Du, Hiyoung Kim, Dong-Chan Oh, Sun-Shin Cha, Jihye Lee, Sang-Jip Nam, William Fenical	Marine Drugs	2021-12-29	Abstract
Genome-Scale Metabolic Modeling Enables In-Depth Understanding of Big Data.	Anurag Passi, Juan D Tibocha-Bonilla, Manish Kumar, Diego Tec-Campos, Karsten Zengler, Cristal Zuniga	Metabolites	2021-12-24	Abstract
Extremophile enzyme optimization for low temperature and high salinity are fundamentally incompatible.	Luke Piszkin, Jeff Bowman	Extremophiles : Life Under Extreme Conditions	2021-12-23	Abstract
Linking anaerobic gut bacteria and cardiovascular disease.	Joanna Coker, Livia S Zaramela, Karsten Zengler	Nature Microbiology	2021-12-23	Abstract
Class Ib MHC-Mediated Immune Interactions Play a Critical Role in Maintaining Mucosal Homeostasis in the Mammalian Large Intestine.	Suryasarathi Dasgupta, Igor Maricic, Jay Tang, Stephen Wandro, Kelly Weldon, Carolina S Carpenter, Lars Eckmann, Jesus Rivera-Nieves, William Sandborn, Rob Knight, Peter Dorrestein, Austin D Swafford, Vipin Kumar	ImmunoHorizons	2021-12-15	Abstract
Mammalian gut metabolomes mirror microbiome composition and host phylogeny.	Rachel Gregor, Maraike Probst, Stav Eyal, Alexander Aksenov, Goor Sasson, Igal Horovitz, Pieter C Dorrestein, Michael M Meijler, Itzhak Mizrahi	The ISME Journal	2021-12-13	Abstract
Brilliantia kiribatiensis, a new genus and species of Cladophorales (Chlorophyta) from the remote coral reefs of the Southern Line Islands, Pacific Ocean.	Frederik Leliaert, Emily L A Kelly, Jan Janouškovec, Michael D Fox, Maggie D Johnson, Farran M Redfern, Taati Eria, Andreas F Haas, Enric Sala, Stuart A Sandin, Jennifer E Smith	Journal Of Phycology	2021-12-12	Abstract
From microbial community structure to metabolic inference using paprica.	Natalia G Erazo, Avishek Dutta, Jeff S Bowman	STAR Protocols	2021-12-11	Abstract
Microbial co-occurrence complicates associations of gut microbiome with US immigration, dietary intake and obesity.	Zheng Wang, Mykhaylo Usyk, Yoshiki Vázquez-Baeza, Guo-Chong Chen, Carmen R Isasi, Jessica S Williams-Nguyen, Simin Hua, Daniel McDonald, Bharat Thyagarajan, Martha L Daviglus, Jianwen Cai, Kari E North, Tao Wang, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi	Genome Biology	2021-12-10	Abstract
Bicarbonate modulates delafloxacin activity against MDR Staphylococcus aureus and Pseudomonas aeruginosa.	Mische Holland, Elisabet Bjanes, Victor Nizet, Nicholas Dillon	The Journal Of Antimicrobial Chemotherapy	2021-12-10	Abstract
Prior Methamphetamine Use Disorder History Does Not Impair Interoceptive Processing of Soft Touch in HIV Infection.	Amanda Bischoff-Grethe, Ronald J Ellis, Susan F Tapert, Martin P Paulus, Igor Grant, Translational Methamphetamine Aids Research Center Tmarc	Viruses	2021-12-10	Abstract
The population genetics of collateral resistance and sensitivity.	Sarah M Ardell, Sergey Kryazhimskiy	ELife	2021-12-10	Abstract
CRIg on liver macrophages clears pathobionts and protects against alcoholic liver disease.	Yi Duan, Huikuan Chu, Katharina Brandl, Lu Jiang, Suling Zeng, Nairika Meshgin, Eleni Papachristoforou, Josepmaria Argemi, Beatriz G Mendes, Yanhan Wang, Hua Su, Weizhong Sun, Cristina Llorente, Tim Hendrikx, Xiao Liu, Mojgan Hosseini, Tatiana Kisseleva, David A Brenner, Ramon Bataller, Prakash Ramachandran, Michael Karin, Wenxian Fu, Bernd Schnabl	Nature Communications	2021-12-09	Abstract
The fecal mycobiome in non-alcoholic fatty liver disease.	Münevver Demir, Sonja Lang, Phillipp Hartmann, Yi Duan, Anna Martin, Yukiko Miyamoto, Marina Bondareva, Xinlian Zhang, Yanhan Wang, Philipp Kasper, Corinna Bang, Christoph Roderburg, Frank Tacke, Hans-Michael Steffen, Tobias Goeser, Andrey Kruglov, Lars Eckmann, Peter Stärkel, Derrick E Fouts, Bernd Schnabl	Journal Of Hepatology	2021-12-09	Abstract
Defining and quantifying the core microbiome: Challenges and prospects.	Alexander T Neu, Eric E Allen, Kaustuv Roy	Proceedings Of The National Academy Of Sciences Of The United States Of America	2021-12-04	Abstract
Clean room microbiome complexity impacts planetary protection bioburden.	Ryan Hendrickson, Camilla Urbaniak, Jeremiah J Minich, Heidi S Aronson, Cameron Martino, Ramunas Stepanauskas, Rob Knight, Kasthuri Venkateswaran	Microbiome	2021-12-04	Abstract
Seriniquinones as Therapeutic Leads for Treatment of BRAF and NRAS Mutant Melanomas.	Amanda S Hirata, Paula Rezende-Teixeira, João Agostinho Machado-Neto, Paula C Jimenez, James J La Clair, William Fenical, Leticia V Costa-Lotufo	Molecules (Basel, Switzerland)	2021-12-04	Abstract
GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser.	Daniel Petras, Vanessa V Phelan, Deepa Acharya, Andrew E Allen, Allegra T Aron, Nuno Bandeira, Benjamin P Bowen, Deirdre Belle-Oudry, Simon Boecker, Dale A Cummings, Jessica M Deutsch, Eoin Fahy, Neha Garg, Rachel Gregor, Jo Handelsman, Mirtha Navarro-Hoyos, Alan K Jarmusch, Scott A Jarmusch, Katherine Louie, Katherine N Maloney, Michael T Marty, Michael M Meijler, Itzhak Mizrahi, Rachel L Neve, Trent R Northen, Carlos Molina-Santiago, Morgan Panitchpakdi, Benjamin Pullman, Aaron W Puri, Robin Schmid, Shankar Subramaniam, Monica Thukral, Felipe Vasquez-Castro, Pieter C Dorrestein, Mingxun Wang	Nature Methods	2021-12-03	Abstract
A particulate saponin/TLR agonist vaccine adjuvant alters lymph flow and modulates adaptive immunity.	Murillo Silva, Yu Kato, Mariane B Melo, Ivy Phung, Brian L Freeman, Zhongming Li, Kangsan Roh, Jan W Van Wijnbergen, Hannah Watkins, Chiamaka A Enemuo, Brittany L Hartwell, Jason Y H Chang, Shuhao Xiao, Kristen A Rodrigues, Kimberly M Cirelli, Na Li, Sonya Haupt, Aereas Aung, Benjamin Cossette, Wuhbet Abraham, Swati Kataria, Raiza Bastidas, Jinal Bhiman, Caitlyn Linde, Nathaniel I Bloom, Bettina Groschel, Erik Georgeson, Nicole Phelps, Ayush Thomas, Julia Bals, Diane G Carnathan, Daniel Lingwood, Dennis R Burton, Galit Alter, Timothy P Padera, Angela M Belcher, William R Schief, Guido Silvestri, Ruth M Ruprecht, Shane Crotty, Darrell J Irvine	Science Immunology	2021-12-03	Abstract
Gut microbiota-driven brain Aβ amyloidosis in mice requires microglia.	Hemraj B Dodiya, Holly L Lutz, Ian Q Weigle, Priyam Patel, Julia Michalkiewicz, Carlos J Roman-Santiago, Can Martin Zhang, Yingxia Liang, Abhinav Srinath, Xulun Zhang, Jessica Xia, Monica Olszewski, Xiaoqiong Zhang, Matthew John Schipma, Eugene B Chang, Rudolph E Tanzi, Jack A Gilbert, Sangram S Sisodia	The Journal Of Experimental Medicine	2021-12-02	Abstract
Intestinal commensal microbiota and cytokines regulate Fut2 Paneth cells for gut defense.	Mariko Kamioka, Yoshiyuki Goto, Kiminori Nakamura, Yuki Yokoi, Rina Sugimoto, Shuya Ohira, Yosuke Kurashima, Shingo Umemoto, Shintaro Sato, Jun Kunisawa, Yu Takahashi, Steven E Domino, Jean-Christophe Renauld, Susumu Nakae, Yoichiro Iwakura, Peter B Ernst, Tokiyoshi Ayabe, Hiroshi Kiyono	Proceedings Of The National Academy Of Sciences Of The United States Of America	2021-12-02	Abstract
Siderophore-mediated zinc acquisition enhances enterobacterial colonization of the inflamed gut.	Judith Behnsen, Hui Zhi, Allegra T Aron, Vivekanandan Subramanian, William Santus, Michael H Lee, Romana R Gerner, Daniel Petras, Janet Z Liu, Keith D Green, Sarah L Price, Jose Camacho, Hannah Hillman, Joshua Tjokrosurjo, Nicola P Montaldo, Evelyn M Hoover, Sean Treacy-Abarca, Benjamin A Gilston, Eric P Skaar, Walter J Chazin, Sylvie Garneau-Tsodikova, Matthew B Lawrenz, Robert D Perry, Sean-Paul Nuccio, Pieter C Dorrestein, Manuela Raffatellu	Nature Communications	2021-12-01	Abstract
The Fecal Microbiome and Metabolome of Pitt Hopkins Syndrome, a Severe Autism Spectrum Disorder.	Amanda H Dilmore, Daniel McDonald, Tanya T Nguyen, James B Adams, Rosa Krajmalnik-Brown, Emmanuel Elijah, Pieter C Dorrestein, Rob Knight	MSystems	2021-11-30	Abstract
A combined EM and proteomic analysis places HIV-1 Vpu at the crossroads of retromer and ESCRT complexes: PTPN23 is a Vpu-cofactor.	Charlotte A Stoneham, Simon Langer, Paul D De Jesus, Jacob M Wozniak, John Lapek, Thomas Deerinck, Andrea Thor, Lars Pache, Sumit K Chanda, David J Gonzalez, Mark Ellisman, John Guatelli	PLoS Pathogens	2021-11-29	Abstract
Differential Fecal Microbiome Dysbiosis after Equivalent Traumatic Brain Injury in Aged Versus Young Adult Mice.	Booker T Davis, Mecca B A R Islam, Promi Das, Jack A Gilbert, Karen J Ho, Steven J Schwulst	Journal Of Experimental Neurology	2021-11-26	Abstract
Redrawing therapeutic boundaries: microbiota and cancer.	Jonathan Sholl, Gregory D Sepich-Poore, Rob Knight, Thomas Pradeu	Trends In Cancer	2021-11-26	Abstract
Host Factors in Dysregulation of the Gut Barrier Function during Alcohol-Associated Liver Disease.	Luca Maccioni, Isabelle A Leclercq, Bernd Schnabl, Peter Stärkel	International Journal Of Molecular Sciences	2021-11-24	Abstract
Vertical Inheritance Facilitates Interspecies Diversification in Biosynthetic Gene Clusters and Specialized Metabolites.	Alexander B Chase, Douglas Sweeney, Mitchell N Muskat, Dulce G Guillén-Matus, Paul R Jensen	MBio	2021-11-23	Abstract
Comparison of fecal and oral collection methods for studies of the human microbiota in two Iranian cohorts.	Zeni Wu, Autumn G Hullings, Reza Ghanbari, Arash Etemadi, Yunhu Wan, Bin Zhu, Hossein Poustchi, Behnam Bagheri Fahraji, Mohammad Javad Zare Sakhvidi, Jianxin Shi, Rob Knight, Reza Malekzadeh, Rashmi Sinha, Emily Vogtmann	BMC Microbiology	2021-11-22	Abstract
Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals.	Linda Wegley Kelly, Craig E Nelson, Daniel Petras, Irina Koester, Zachary A Quinlan, Milou G I Arts, Louis-Felix Nothias, Jacqueline Comstock, Brandie M White, Ellen C Hopmans, Fleur C van Duyl, Craig A Carlson, Lihini I Aluwihare, Pieter C Dorrestein, Andreas F Haas	Proceedings Of The National Academy Of Sciences Of The United States Of America	2021-11-22	Abstract
Native mass spectrometry-based metabolomics identifies metal-binding compounds.	Allegra T Aron, Daniel Petras, Robin Schmid, Julia M Gauglitz, Isabell Büttel, Luis Antelo, Hui Zhi, Sean-Paul Nuccio, Christina C Saak, Kien P Malarney, Eckhard Thines, Rachel J Dutton, Lihini I Aluwihare, Manuela Raffatellu, Pieter C Dorrestein	Nature Chemistry	2021-11-18	Abstract
Severe delayed hypersensitivity reactions to IL-1 and IL-6 inhibitors link to common HLA-DRB1*15 alleles.	Vivian E Saper, Michael J Ombrello, Adriana H Tremoulet, Gonzalo Montero-Martin, Sampath Prahalad, Scott Canna, Chisato Shimizu, Gail Deutsch, Serena Y Tan, Elaine F Remmers, Dimitri Monos, Timothy Hahn, Omkar K Phadke, Elaine Cassidy, Ian Ferguson, Vamsee Mallajosyula, Jianpeng Xu, Jaime S Rosa Duque, Gilbert T Chua, Debopam Ghosh, Ann Marie Szymanski, Danielle Rubin, Jane C Burns, Lu Tian, Marcelo A Fernandez-Vina, Elizabeth D Mellins, Jill A Hollenbach, ,	Annals Of The Rheumatic Diseases	2021-11-17	Abstract
Reporting guidelines for human microbiome research: the STORMS checklist.	Chloe Mirzayi, Audrey Renson, , , Fatima Zohra, Shaimaa Elsafoury, Ludwig Geistlinger, Lora J Kasselman, Kelly Eckenrode, Janneke van de Wijgert, Amy Loughman, Francine Z Marques, David A MacIntyre, Manimozhiyan Arumugam, Rimsha Azhar, Francesco Beghini, Kirk Bergstrom, Ami Bhatt, Jordan E Bisanz, Jonathan Braun, Hector Corrada Bravo, Gregory A Buck, Frederic Bushman, David Casero, Gerard Clarke, Maria Carmen Collado, Paul D Cotter, John F Cryan, Ryan T Demmer, Suzanne Devkota, Eran Elinav, Juan S Escobar, Jennifer Fettweis, Robert D Finn, Anthony A Fodor, Sofia Forslund, Andre Franke, Cesare Furlanello, Jack Gilbert, Elizabeth Grice, Benjamin Haibe-Kains, Scott Handley, Pamela Herd, Susan Holmes, Jonathan P Jacobs, Lisa Karstens, Rob Knight, Dan Knights, Omry Koren, Douglas S Kwon, Morgan Langille, Brianna Lindsay, Dermot McGovern, Alice C McHardy, Shannon McWeeney, Noel T Mueller, Luigi Nezi, Matthew Olm, Noah Palm, Edoardo Pasolli, Jeroen Raes, Matthew R Redinbo, Malte Rühlemann, R Balfour Sartor, Patrick D Schloss, Lynn Schriml, Eran Segal, Michelle Shardell, Thomas Sharpton, Ekaterina Smirnova, Harry Sokol, Justin L Sonnenburg, Sujatha Srinivasan, Louise B Thingholm, Peter J Turnbaugh, Vaibhav Upadhyay, Ramona L Walls, Paul Wilmes, Takuji Yamada, Georg Zeller, Mingyu Zhang, Ni Zhao, Liping Zhao, Wenjun Bao, Aedin Culhane, Viswanath Devanarayan, Joaquin Dopazo, Xiaohui Fan, Matthias Fischer, Wendell Jones, Rebecca Kusko, Christopher E Mason, Tim R Mercer, Susanna-Assunta Sansone, Andreas Scherer, Leming Shi, Shraddha Thakkar, Weida Tong, Russ Wolfinger, Christopher Hunter, Nicola Segata, Curtis Huttenhower, Jennifer B Dowd, Heidi E Jones, Levi Waldron	Nature Medicine	2021-11-17	Abstract
Gut microbiome in Parkinson's disease: New insights from meta-analysis.	Tzi Shin Toh, Chun Wie Chong, Shen-Yang Lim, Jeff Bowman, Mihai Cirstea, Chin-Hsien Lin, Chieh-Chang Chen, Silke Appel-Cresswell, B Brett Finlay, Ai Huey Tan	Parkinsonism & Related Disorders	2021-11-17	Abstract
Bacteriophages and their potential for treatment of gastrointestinal diseases.	Yi Duan, Ry Young, Bernd Schnabl	Nature Reviews. Gastroenterology & Hepatology	2021-11-15	Abstract
High-resolution in situ analysis of Cas9 germline transcript distributions in gene-drive Anopheles mosquitoes.	Gerard Terradas, Anita Hermann, Anthony A James, William McGinnis, Ethan Bier	G3 (Bethesda, Md.)	2021-11-15	Abstract
The Human-Milk Oligosaccharide Profile of Lactating Women in Dhaka, Bangladesh.	Lisa G Pell, Eric O Ohuma, Chloe Yonemitsu, Miranda G Loutet, Tahmeed Ahmed, Abdullah Al Mahmud, Meghan B Azad, Lars Bode, Daniel E Roth	Current Developments In Nutrition	2021-11-13	Abstract
Microbial-Driven Immunological Memory and Its Potential Role in Microbiome Editing for the Prevention of Colorectal Cancer.	Laure Campillo-Gimenez, David Rios-Covian, Jesus Rivera-Nieves, Hiroshi Kiyono, Hiutung Chu, Peter B Ernst	Frontiers In Cellular And Infection Microbiology	2021-11-12	Abstract
Escherichia coli Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational Data	Patrick V Phaneuf, Daniel C Zielinski, James T Yurkovich, Josefin Johnsen, Richard Szubin, Lei Yang, Se Hyeuk Kim, Sebastian Schulz, Muyao Wu, Christopher Dalldorf, Emre Ozdemir, Rebecca M Lennen, Bernhard O Palsson, Adam M Feist	ACS Synthetic Biology	2021-11-11	Abstract
Spectrum of Viral Pathogens Identified in Children with Clinical Myocarditis (Pre-COVID, 2000-2018): Etiologic Agent vs Innocent Bystander.	Othman A Aljohani, Duncan Mackie, Andras Bratincsak, John Bradley, James C Perry	The Journal Of Pediatrics	2021-11-10	Abstract
Integrative Analysis of Metabolome and Microbiome in Patients with Progressive Alcohol-Associated Liver Disease.	Bei Gao, Yixin Zhu, Nan Gao, Weishou Shen, Peter Stärkel, Bernd Schnabl	Metabolites	2021-11-10	Abstract
Identification of a therapeutic interfering particle-A single-dose SARS-CoV-2 antiviral intervention with a high barrier to resistance.	Sonali Chaturvedi, Gustavo Vasen, Michael Pablo, Xinyue Chen, Nathan Beutler, Arjun Kumar, Elizabeth Tanner, Sylvia Illouz, Donna Rahgoshay, John Burnett, Leo Holguin, Pei-Yi Chen, Blaise Ndjamen, Melanie Ott, Robert Rodick, Thomas Rogers, Davey M Smith, Leor S Weinberger	Cell	2021-11-10	Abstract
Re-classification of strains and mining secondary metabolite biosynthetic gene clusters.	Namil Lee, Mira Choi, Woori Kim, Soonkyu Hwang, Yongjae Lee, Ji Hun Kim, Gahyeon Kim, Hyeseong Kim, Suhyung Cho, Sun Chang Kim, Bernhard Palsson, Kyoung-Soon Jang, Byung-Kwan Cho	IScience	2021-11-09	Abstract
The Gut Microbiome Modifies the Association between a Mediterranean Diet and Diabetes in US Hispanic / Latino Population.	Dong D Wang, Qibin Qi, Zheng Wang, Mykhaylo Usyk, Daniela Sotres-Alvarez, Josiemer Mattei, Martha Tamez, Marc D Gellman, Martha Daviglus, Frank B Hu, Meir J Stampfer, Curtis Huttenhower, Rob Knight, Robert D Burk, Robert C Kaplan	The Journal Of Clinical Endocrinology And Metabolism	2021-11-08	Abstract
Multi-Omics Study of Keystone Species in a Cystic Fibrosis Microbiome.	Cynthia B Silveira, Ana G Cobián-Güemes, Carla Uranga, Jonathon L Baker, Anna Edlund, Forest Rohwer, Douglas Conrad	International Journal Of Molecular Sciences	2021-11-07	Abstract
Genome mining methods to discover bioactive natural products.	Katherine D Bauman, Keelie S Butler, Bradley S Moore, Jonathan R Chekan	Natural Product Reports	2021-11-04	Abstract
Potent Anti-SARS-CoV-2 Activity by the Natural Product Gallinamide A and Analogues via Inhibition of Cathepsin L.	Anneliese S Ashhurst, Arthur H Tang, Pavla Fajtová, Michael C Yoon, Anupriya Aggarwal, Max J Bedding, Alexander Stoye, Laura Beretta, Dustin Pwee, Aleksandra Drelich, Danielle Skinner, Linfeng Li, Thomas D Meek, James H McKerrow, Vivian Hook, Chien-Te Tseng, Mark Larance, Stuart Turville, William H Gerwick, Anthony J O'Donoghue, Richard J Payne	Journal Of Medicinal Chemistry	2021-11-03	Abstract
Role of the Gut Microbiota in Parenteral Nutrition-associated Liver Disease: From Current Knowledge to Future Opportunities.	Lu Jiang, Ying Wang, Yongtao Xiao, Yong Wang, Junkai Yan, Bernd Schnabl, Wei Cai	The Journal Of Nutrition	2021-11-03	Abstract
Analysis of SARS-CoV-2 RNA Persistence across Indoor Surface Materials Reveals Best Practices for Environmental Monitoring Programs.	Rodolfo A Salido, Victor J Cantú, Alex E Clark, Sandra L Leibel, Anahid Foroughishafiei, Anushka Saha, Abbas Hakim, Alhakam Nouri, Alma L Lastrella, Anelizze Castro-Martínez, Ashley Plascencia, Bhavika K Kapadia, Bing Xia, Christopher A Ruiz, Clarisse A Marotz, Daniel Maunder, Elijah S Lawrence, Elizabeth W Smoot, Emily Eisner, Evelyn S Crescini, Laura Kohn, Lizbeth Franco Vargas, Marisol Chacón, Maryann Betty, Michal Machnicki, Min Yi Wu, Nathan A Baer, Pedro Belda-Ferre, Peter De Hoff, Phoebe Seaver, R Tyler Ostrander, Rebecca Tsai, Shashank Sathe, Stefan Aigner, Sydney C Morgan, Toan T Ngo, Tom Barber, Willi Cheung, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Rebecca Fielding-Miller, Rob Knight	MSystems	2021-11-02	Abstract
Putting microbial interactions back into community contexts.	Emily C Pierce, Rachel J Dutton	Current Opinion In Microbiology	2021-11-02	Abstract
The interaction of enteric bacterial effectors with the host engulfment pathway control innate immune responses.	Ibrahim M Sayed, Stella-Rita Ibeawuchi, Dominique Lie, Mahitha Shree Anandachar, Rama Pranadinata, Manuela Raffatellu, Soumita Das	Gut Microbes	2021-11-01	Abstract
Antibacterial Meroterpenoids, Merochlorins G-J from the Marine Bacterium sp.	Min-Ji Ryu, Prima F Hillman, Jihye Lee, Sunghoon Hwang, Eun-Young Lee, Sun-Shin Cha, Inho Yang, Dong-Chan Oh, Sang-Jip Nam, William Fenical	Marine Drugs	2021-10-30	Abstract
Development of a Rapid and Sensitive CasRx-Based Diagnostic Assay for SARS-CoV-2.	Daniel J Brogan, Duverney Chaverra-Rodriguez, Calvin P Lin, Andrea L Smidler, Ting Yang, Lenissa M Alcantara, Igor Antoshechkin, Junru Liu, Robyn R Raban, Pedro Belda-Ferre, Rob Knight, Elizabeth A Komives, Omar S Akbari	ACS Sensors	2021-10-29	Abstract
Fecal Microbiome Composition Does Not Predict Diet-Induced TMAO Production in Healthy Adults.	Marc Ferrell, Peter Bazeley, Zeneng Wang, Bruce S Levison, Xinmin S Li, Xun Jia, Ronald M Krauss, Rob Knight, Aldons J Lusis, J C Garcia-Garcia, Stanley L Hazen, W H Wilson Tang	Journal Of The American Heart Association	2021-10-29	Abstract
Rapid, Affordable, and Uncomplicated Production of Bacterial Cell-free Lysate.	Robert M Cooper, Taishi Tonooka, Andriy Didovyk, Jeff Hasty	Journal Of Visualized Experiments : JoVE	2021-10-29	Abstract
Facultative Parthenogenesis in California Condors.	Oliver A Ryder, Steven Thomas, Jessica Martin Judson, Michael N Romanov, Sugandha Dandekar, Jeanette C Papp, Lindsay C Sidak-Loftis, Kelli Walker, Ilse H Stalis, Michael Mace, Cynthia C Steiner, Leona G Chemnick	The Journal Of Heredity	2021-10-28	Abstract
Asymptomatic detection of SARS-CoV-2 among cancer patients receiving infusional anti-cancer therapy.	Justin Shaya, Angelo Cabal, Taylor Nonato, Francesca Torriani, Joseph Califano, Scott Lippman, Assuntina Sacco, Rana R McKay	Cancer Medicine	2021-10-28	Abstract
Biosynthesis and antifungal activity of fungus-induced O-methylated flavonoids in maize.	Christiane Förster, Vinzenz Handrick, Yezhang Ding, Yoko Nakamura, Christian Paetz, Bernd Schneider, Gabriel Castro-Falcón, Chambers C Hughes, Katrin Luck, Sowmya Poosapati, Grit Kunert, Alisa Huffaker, Jonathan Gershenzon, Eric A Schmelz, Tobias G Köllner	Plant Physiology	2021-10-27	Abstract
Characterization of SARS-CoV-2 and common cold coronavirus-specific T-cell responses in MIS-C and Kawasaki disease children.	Li-En Hsieh, Alba Grifoni, John Sidney, Chisato Shimizu, Hiroko Shike, Nanda Ramchandar, Elizabeth Moreno, Adriana H Tremoulet, Jane C Burns, Alessandra Franco	European Journal Of Immunology	2021-10-27	Abstract
Drugs and Bugs: The Gut-Brain Axis and Substance Use Disorders.	Sierra Simpson, Rio Mclellan, Emma Wellmeyer, Frederic Matalon, Olivier George	Journal Of Neuroimmune Pharmacology : The Official Journal Of The Society On NeuroImmune Pharmacology	2021-10-25	Abstract
Editorial: Host-Pathogen Interactions During Pneumococcal Infection.	Masaya Yamaguchi, Yuki Kinjo, Victor Nizet	Frontiers In Cellular And Infection Microbiology	2021-10-25	Abstract
Population Pharmacokinetic Modeling and Probability of Pharmacodynamic Target Attainment for Ceftazidime-Avibactam in Pediatric Patients Aged 3 Months and Older.	Richard C Franzese, Lynn McFadyen, Kenny J Watson, Todd Riccobene, Timothy J Carrothers, Manoli Vourvahis, Phylinda L S Chan, Susan Raber, John S Bradley, Mark Lovern	Clinical Pharmacology And Therapeutics	2021-10-23	Abstract
Hepatocellular Carcinoma Risk Assessment for Patients With Advanced Fibrosis After Eradication of Hepatitis C Virus.	Nobuharu Tamaki, Masayuki Kurosaki, Yutaka Yasui, Nami Mori, Keiji Tsuji, Chitomi Hasebe, Kouji Joko, Takehiro Akahane, Koichiro Furuta, Haruhiko Kobashi, Hiroyuki Kimura, Hitoshi Yagisawa, Hiroyuki Marusawa, Masahiko Kondo, Yuji Kojima, Hideo Yoshida, Yasushi Uchida, Toshifumi Tada, Shinichiro Nakamura, Satoshi Yasuda, Hidenori Toyoda, Rohit Loomba, Namiki Izumi	Hepatology Communications	2021-10-22	Abstract
Mucin-mimetic glycan arrays integrating machine learning for analyzing receptor pattern recognition by influenza A viruses.	Taryn M Lucas, Chitrak Gupta, Meghan O Altman, Emi Sanchez, Matthew R Naticchia, Pascal Gagneux, Abhishek Singharoy, Kamil Godula	Chem	2021-10-22	Abstract
Specialized Metabolite Mediated Predation Defense in the Marine Actinobacterium Salinispora	Robert N Tuttle, Greg W Rouse, Gabriel Castro-Falcón, Chambers C Hughes, Paul R Jensen	Applied And Environmental Microbiology	2021-10-20	Abstract
Antimicrobials from a feline commensal bacterium inhibit skin infection by drug-resistant S. pseudintermedius	Alan M O'Neill, Kate A Worthing, Nikhil Kulkarni, Fengwu Li, Teruaki Nakatsuji, Dominic McGrosso, Robert H Mills, Gayathri Kalla, Joyce Y Cheng, Jacqueline M Norris, Kit Pogliano, Joe Pogliano, David J Gonzalez, Richard L Gallo	ELife	2021-10-19	Abstract
The S Protein of Group B Is a Critical Virulence Determinant That Impacts the Cell Surface Virulome.	Anaamika Campeau, Satoshi Uchiyama, Concepcion Sanchez, Consuelo Sauceda, Victor Nizet, David J Gonzalez	Frontiers In Microbiology	2021-10-14	Abstract
Immune Response in Severe and Non-Severe Coronavirus Disease 2019 (COVID-19) Infection: A Mechanistic Landscape.	Kavitha Mukund, Priya Nayak, Chethan Ashokkumar, Sohail Rao, Jose Almeda, Monica M Betancourt-Garcia, Rakesh Sindhi, Shankar Subramaniam	Frontiers In Immunology	2021-10-13	Abstract
Microbial diversity in tropical marine sediments assessed using culture-dependent and culture-independent techniques.	Alyssa M Demko, Nastassia V Patin, Paul R Jensen	Environmental Microbiology	2021-10-11	Abstract
Traditional Farming Lifestyle in Old Older Mennonites Modulates Human Milk Composition.	Antti E Seppo, Rakin Choudhury, Catherine Pizzarello, Rohith Palli, Sade Fridy, Puja Sood Rajani, Jessica Stern, Camille Martina, Chloe Yonemitsu, Lars Bode, Kevin Bu, Sabrina Tamburini, Enrica Piras, David S Wallach, Maria Allen, R John Looney, Jose C Clemente, Juilee Thakar, Kirsi M Järvinen	Frontiers In Immunology	2021-10-11	Abstract
Reconstitution of an intact clock reveals mechanisms of circadian timekeeping.	Archana G Chavan, Jeffrey A Swan, Joel Heisler, Cigdem Sancar, Dustin C Ernst, Mingxu Fang, Joseph G Palacios, Rebecca K Spangler, Clive R Bagshaw, Sarvind Tripathi, Priya Crosby, Susan S Golden, Carrie L Partch, Andy LiWang	Science (New York, N.Y.)	2021-10-08	Abstract
SARS-CoV-2 infection generates tissue-localized immunological memory in humans.	Maya M L Poon, Ksenia Rybkina, Yu Kato, Masaru Kubota, Rei Matsumoto, Nathaniel I Bloom, Zeli Zhang, Kathryn M Hastie, Alba Grifoni, Daniela Weiskopf, Steven B Wells, Basak B Ural, Nora Lam, Peter A Szabo, Pranay Dogra, Yoon S Lee, Joshua I Gray, Marissa C Bradley, Maigan A Brusko, Todd M Brusko, Erica O Saphire, Thomas J Connors, Alessandro Sette, Shane Crotty, Donna L Farber	Science Immunology	2021-10-07	Abstract
A posteriori dietary patterns better explain variations of the gut microbiome than individual markers in the American Gut Project.	Aurélie Cotillard, Agnès Cartier-Meheust, Nicole S Litwin, Soline Chaumont, Mathilde Saccareau, Franck Lejzerowicz, Julien Tap, Hana Koutnikova, Diana Gutierrez Lopez, Daniel McDonald, Se Jin Song, Rob Knight, Muriel Derrien, Patrick Veiga	The American Journal Of Clinical Nutrition	2021-10-07	Abstract
Vitamin B-12 and the Gastrointestinal Microbiome: A Systematic Review.	Heather M Guetterman, Samantha L Huey, Rob Knight, Allison M Fox, Saurabh Mehta, Julia L Finkelstein	Advances In Nutrition (Bethesda, Md.)	2021-10-06	Abstract
Uniform Manifold Approximation and Projection (UMAP) Reveals Composite Patterns and Resolves Visualization Artifacts in Microbiome Data.	George Armstrong, Cameron Martino, Gibraan Rahman, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Gal Mishne, Rob Knight	MSystems	2021-10-05	Abstract
Spatial metabolomics identifies localized chemical changes in heart tissue during chronic cardiac Chagas Disease.	Danya A Dean, Gautham Gautham, Jair L Siqueira-Neto, James H McKerrow, Pieter C Dorrestein, Laura-Isobel McCall	PLoS Neglected Tropical Diseases	2021-10-04	Abstract
Update on the Role of the Gut Microbiota on Alcohol-Associated Liver Disease.	Bernd Schnabl	Gastroenterology & Hepatology	2021-10-04	Abstract
Unique virulence role of post-translocational chaperone PrsA in shaping secretome.	Zhao-Yi Wu, Anaamika Campeau, Chao-Hsien Liu, David J Gonzalez, Masaya Yamaguchi, Shigetada Kawabata, Chieh-Hsien Lu, Chian-Yu Lai, Hao-Chieh Chiu, Yung-Chi Chang	Virulence	2021-10-01	Abstract
Iron-regulatory genes are associated with Neuroimaging measures in HIV infection.	Christine Fennema-Notestine, Tricia A Thornton-Wells, Todd Hulgan, Scott Letendre, Ronald J Ellis, Donald R Franklin, Albert M Anderson, Robert K Heaton, Cinnamon S Bloss, Igor Grant, Asha R Kallianpur,	Brain Imaging And Behavior	2021-10-01	Abstract
Dietary Neu5Ac Intervention Protects Against Atherosclerosis Associated With Human-Like Neu5Gc Loss.	Kunio Kawanishi, Joanna K Coker, Kaare V Grunddal, Chirag Dhar, Jason Hsiao, Karsten Zengler, Nissi Varki, Ajit Varki, Philip L S M Gordts	Arteriosclerosis, Thrombosis, And Vascular Biology	2021-09-30	Abstract
Bacterial Membrane-Derived Vesicles Attenuate Vancomycin Activity against Methicillin-Resistant .	Monika Kumaraswamy, Kamilla Wiull, Bishnu Joshi, George Sakoulas, Armin Kousha, Gustav Vaaje-Kolstad, Mona Johannessen, Kristin Hegstad, Victor Nizet, Fatemeh Askarian	Microorganisms	2021-09-29	Abstract
Microbial Ecology and Evolution Are Essential for Understanding Pandemics.	Megan E Frederickson, Aspen T Reese	MBio	2021-09-28	Abstract
Determinants of SARS-CoV-2 entry and replication in airway mucosal tissue and susceptibility in smokers.	Tsuguhisa Nakayama, Ivan T Lee, Sizun Jiang, Matthias S Matter, Carol H Yan, Jonathan B Overdevest, Chien-Ting Wu, Yury Goltsev, Liang-Chun Shih, Chun-Kang Liao, Bokai Zhu, Yunhao Bai, Peter Lidsky, Yinghong Xiao, David Zarabanda, Angela Yang, Meena Easwaran, Christian M Schürch, Pauline Chu, Han Chen, Anna K Stalder, David R McIlwain, Nicole A Borchard, Phil A Gall, Sachi S Dholakia, Wei Le, Le Xu, Chih-Jaan Tai, Te-Huei Yeh, Elizabeth Erickson-Direnzo, Jason M Duran, Kirsten D Mertz, Peter H Hwang, Jasmin D Haslbauer, Peter K Jackson, Thomas Menter, Raul Andino, Peter D Canoll, Adam S DeConde, Zara M Patel, Alexandar Tzankov, Garry P Nolan, Jayakar V Nayak	Cell Reports. Medicine	2021-09-28	Abstract
Detection and quantification of Mycobacterium tuberculosis antigen CFP10 in serum and urine for the rapid diagnosis of active tuberculosis disease.	Marva Seifert, Eva Vargas, Victor Ruiz-Valdepeñas Montiel, Joseph Wang, Timothy C Rodwell, Antonino Catanzaro	Scientific Reports	2021-09-28	Abstract
Discovery and Mechanism of SARS-CoV-2 Main Protease Inhibitors.	Sarah Huff, Indrasena Reddy Kummetha, Shashi Kant Tiwari, Matthew B Huante, Alex E Clark, Shaobo Wang, William Bray, Davey Smith, Aaron F Carlin, Mark Endsley, Tariq M Rana	Journal Of Medicinal Chemistry	2021-09-27	Abstract
SARS-CoV-2 Variants of Concern.	Jun Yong Choi, Davey M Smith	Yonsei Medical Journal	2021-09-27	Abstract
RiboRid: A low cost, advanced, and ultra-efficient method to remove ribosomal RNA for bacterial transcriptomics.	Donghui Choe, Richard Szubin, Saugat Poudel, Anand Sastry, Yoseb Song, Yongjae Lee, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho	PLoS Genetics	2021-09-27	Abstract
Gut epithelial IL-27 confers intestinal immunity through the induction of intraepithelial lymphocytes.	Chia-Hao Lin, Mei-Chi Chen, Ling-Li Lin, David A Christian, Booki Min, Christopher A Hunter, Li-Fan Lu	The Journal Of Experimental Medicine	2021-09-23	Abstract
Restriction factor compendium for influenza A virus reveals a mechanism for evasion of autophagy.	Laura Martin-Sancho, Shashank Tripathi, Ariel Rodriguez-Frandsen, Lars Pache, Maite Sanchez-Aparicio, Michael J McGregor, Kelsey M Haas, Danielle L Swaney, Thong T Nguyen, João I Mamede, Christopher Churas, Dexter Pratt, Sara B Rosenthal, Laura Riva, Courtney Nguyen, Nish Beltran-Raygoza, Stephen Soonthornvacharin, Guojun Wang, David Jimenez-Morales, Paul D De Jesus, Hong M Moulton, David A Stein, Max W Chang, Chris Benner, Trey Ideker, Randy A Albrecht, Judd F Hultquist, Nevan J Krogan, Adolfo García-Sastre, Sumit K Chanda	Nature Microbiology	2021-09-23	Abstract
Mass spectrometry-based metabolomics in microbiome investigations.	Anelize Bauermeister, Helena Mannochio-Russo, Letícia V Costa-Lotufo, Alan K Jarmusch, Pieter C Dorrestein	Nature Reviews. Microbiology	2021-09-22	Abstract
Challenges in Determining the Role of Microbiome Evolution in Barrett's Esophagus and Progression to Esophageal Adenocarcinoma.	Caitlin Guccione, Rena Yadlapati, Shailja Shah, Rob Knight, Kit Curtius	Microorganisms	2021-09-22	Abstract
Markers of Gut Barrier Function and Microbial Translocation Associate with Lower Gut Microbial Diversity in People with HIV.	Ronald J Ellis, Jennifer E Iudicello, Robert K Heaton, Stéphane Isnard, John Lin, Jean-Pierre Routy, Sara Gianella, Martin Hoenigl, Rob Knight	Viruses	2021-09-22	Abstract
Detection of sulfate-reducing bacteria as an indicator for successful mitigation of sulfide production.	Avishek Dutta, Fernando Valle, Thomas Goldman, Jeff Keating, Ellen Burke, Nicole Williamson, Reinhard Dirmeier, Jeff S Bowman	Applied And Environmental Microbiology	2021-09-22	Abstract
Extrachromosomal DNA in HPV-Mediated Oropharyngeal Cancer Drives Diverse Oncogene Transcription.	John Pang, Nam Nguyen, Jens Luebeck, Laurel Ball, Andrey Finegersh, Shuling Ren, Takuya Nakagawa, Mitchell Flagg, Sayed Sadat, Paul S Mischel, Guorong Xu, Kathleen Fisch, Theresa Guo, Gabrielle Cahill, Bharat Panuganti, Vineet Bafna, Joseph Califano	Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research	2021-09-21	Abstract
Endothelial Heparan Sulfate Mediates Hepatic Neutrophil Trafficking and Injury during Staphylococcus aureus Sepsis.	Gregory J Golden, Alejandro Gómez Toledo, Alex Marki, James T Sorrentino, Claire Morris, Raquel J Riley, Charlotte Spliid, Qiongyu Chen, Ingrid Cornax, Nathan E Lewis, Nissi Varki, Dzung Le, Johan Malmström, Christofer Karlsson, Klaus Ley, Victor Nizet, Jeffrey D Esko	MBio	2021-09-21	Abstract
Continental-Scale Paddy Soil Bacterial Community Structure, Function, and Biotic Interaction.	Hong-Yi Li, Hang Wang, Xin-Hua Tao, Xian-Zhe Wang, Wei-Zheng Jin, Jack A Gilbert, Yong-Guan Zhu, Zhi-Jian Zhang	MSystems	2021-09-21	Abstract
Cell-intrinsic and -extrinsic roles of miRNAs in regulating T cell immunity.	Sunglim Cho, Jiayi Dong, Li-Fan Lu	Immunological Reviews	2021-09-21	Abstract
Immunobiology of the Classical Lancefield Group A Streptococcal Carbohydrate Antigen.	Nina J Gao, Ervin Rodas Lima, Victor Nizet	Infection And Immunity	2021-09-20	Abstract
Streptolysins are the primary inflammasome activators in macrophages during Streptococcus pyogenes infection.	Johanna Richter, Mercedes M Monteleone, Amanda J Cork, Timothy C Barnett, Victor Nizet, Stephan Brouwer, Kate Schroder, Mark J Walker	Immunology And Cell Biology	2021-09-18	Abstract
Genetic dissection of complex traits using hierarchical biological knowledge.	Hidenori Tanaka, Jason F Kreisberg, Trey Ideker	PLoS Computational Biology	2021-09-17	Abstract
Chemical Proportionality within Molecular Networks.	Daniel Petras, Andrés Mauricio Caraballo-Rodríguez, Alan K Jarmusch, Carlos Molina-Santiago, Julia M Gauglitz, Emily C Gentry, Pedro Belda-Ferre, Diego Romero, Shirley M Tsunoda, Pieter C Dorrestein, Mingxun Wang	Analytical Chemistry	2021-09-17	Abstract
Tender and swollen joint counts are poorly associated with disability in chikungunya arthritis compared to rheumatoid arthritis.	Hugh Watson, Ramão Luciano Nogueira-Hayd, Maony Rodrigues-Moreno, Felipe Naveca, Giulia Calusi, Karol Suchowiecki, Gary S Firestein, Gary Simon, Aileen Y Chang	Scientific Reports	2021-09-17	Abstract
Mechanisms for control of skin immune function by the microbiome.	Teruaki Nakatsuji, Joyce Y Cheng, Richard L Gallo	Current Opinion In Immunology	2021-09-16	Abstract
Gut Metabolites Are More Predictive of Disease and Cohoused States than Gut Bacterial Features in a Polycystic Ovary Syndrome-Like Mouse Model.	Bryan Ho, Daniel Ryback, Basilin Benson, Cayla N Mason, Pedro J Torres, Robert A Quinn, Varykina G Thackray, Scott T Kelley	MSystems	2021-09-14	Abstract
Promises of microbiome-based therapies.	Jasmohan S Bajaj, Siew C Ng, Bernd Schnabl	Journal Of Hepatology	2021-09-13	Abstract
Reduced gut microbiome diversity in people with HIV who have distal neuropathic pain.	Ronald J Ellis, Robert K Heaton, Sara Gianella, Gibraan Rahman, Rob Knight	The Journal Of Pain	2021-09-13	Abstract
Oligosaccharides and Microbiota in Human Milk Are Interrelated at 3 Months Postpartum in a Cohort of Women with a High Prevalence of Gestational Impaired Glucose Tolerance.	Lauren LeMay-Nedjelski, Chloe Yonemitsu, Michelle R Asbury, James Butcher, Sylvia H Ley, Anthony J Hanley, Alex Kiss, Sharon Unger, Julia K Copeland, Pauline W Wang, Alain Stintzi, Lars Bode, Deborah L O'Connor	The Journal Of Nutrition	2021-09-11	Abstract
SARS-CoV-2 indoor air transmission is a threat that can be addressed with science.	Jonathan M Samet, Thomas A Burke, Seema S Lakdawala, John J Lowe, Linsey C Marr, Kimberly A Prather, Marilee Shelton-Davenport, John Volckens	Proceedings Of The National Academy Of Sciences Of The United States Of America	2021-09-09	Abstract
Dissecting the Shared Genetic Architecture of Suicide Attempt, Psychiatric Disorders, and Known Risk Factors.	Niamh Mullins, JooEun Kang, Adrian I Campos, Jonathan R I Coleman, Alexis C Edwards, Hanga Galfalvy, Daniel F Levey, Adriana Lori, Andrey Shabalin, Anna Starnawska, Mei-Hsin Su, Hunna J Watson, Mark Adams, Swapnil Awasthi, Michael Gandal, Jonathan D Hafferty, Akitoyo Hishimoto, Minsoo Kim, Satoshi Okazaki, Ikuo Otsuka, Stephan Ripke, Erin B Ware, Andrew W Bergen, Wade H Berrettini, Martin Bohus, Harry Brandt, Xiao Chang, Wei J Chen, Hsi-Chung Chen, Steven Crawford, Scott Crow, Emily DiBlasi, Philibert Duriez, Fernando Fernández-Aranda, Manfred M Fichter, Steven Gallinger, Stephen J Glatt, Philip Gorwood, Yiran Guo, Hakon Hakonarson, Katherine A Halmi, Hai-Gwo Hwu, Sonia Jain, Stéphane Jamain, Susana Jiménez-Murcia, Craig Johnson, Allan S Kaplan, Walter H Kaye, Pamela K Keel, James L Kennedy, Kelly L Klump, Dong Li, Shih-Cheng Liao, Klaus Lieb, Lisa Lilenfeld, Chih-Min Liu, Pierre J Magistretti, Christian R Marshall, James E Mitchell, Eric T Monson, Richard M Myers, Dalila Pinto, Abigail Powers, Nicolas Ramoz, Stefan Roepke, Vsevolod Rozanov, Stephen W Scherer, Christian Schmahl, Marcus Sokolowski, Michael Strober, Laura M Thornton, Janet Treasure, Ming T Tsuang, Stephanie H Witt, D Blake Woodside, Zeynep Yilmaz, Lea Zillich, Rolf Adolfsson, Ingrid Agartz, Tracy M Air, Martin Alda, Lars Alfredsson, Ole A Andreassen, Adebayo Anjorin, Vivek Appadurai, María Soler Artigas, Sandra Van der Auwera, M Helena Azevedo, Nicholas Bass, Claiton H D Bau, Bernhard T Baune, Frank Bellivier, Klaus Berger, Joanna M Biernacka, Tim B Bigdeli, Elisabeth B Binder, Michael Boehnke, Marco P Boks, Rosa Bosch, David L Braff, Richard Bryant, Monika Budde, Enda M Byrne, Wiepke Cahn, Miguel Casas, Enrique Castelao, Jorge A Cervilla, Boris Chaumette, Sven Cichon, Aiden Corvin, Nicholas Craddock, David Craig, Franziska Degenhardt, Srdjan Djurovic, Howard J Edenberg, Ayman H Fanous, Jerome C Foo, Andreas J Forstner, Mark Frye, Janice M Fullerton, Justine M Gatt, Pablo V Gejman, Ina Giegling, Hans J Grabe, Melissa J Green, Eugenio H Grevet, Maria Grigoroiu-Serbanescu, Blanca Gutierrez, Jose Guzman-Parra, Steven P Hamilton, Marian L Hamshere, Annette Hartmann, Joanna Hauser, Stefanie Heilmann-Heimbach, Per Hoffmann, Marcus Ising, Ian Jones, Lisa A Jones, Lina Jonsson, René S Kahn, John R Kelsoe, Kenneth S Kendler, Stefan Kloiber, Karestan C Koenen, Manolis Kogevinas, Bettina Konte, Marie-Odile Krebs, Mikael Landén, Jacob Lawrence, Marion Leboyer, Phil H Lee, Douglas F Levinson, Calwing Liao, Jolanta Lissowska, Susanne Lucae, Fermin Mayoral, Susan L McElroy, Patrick McGrath, Peter McGuffin, Andrew McQuillin, Sarah E Medland, Divya Mehta, Ingrid Melle, Yuri Milaneschi, Philip B Mitchell, Esther Molina, Gunnar Morken, Preben Bo Mortensen, Bertram Müller-Myhsok, Caroline Nievergelt, Vishwajit Nimgaonkar, Markus M Nöthen, Michael C O'Donovan, Roel A Ophoff, Michael J Owen, Carlos Pato, Michele T Pato, Brenda W J H Penninx, Jonathan Pimm, Giorgio Pistis, James B Potash, Robert A Power, Martin Preisig, Digby Quested, Josep Antoni Ramos-Quiroga, Andreas Reif, Marta Ribasés, Vanesa Richarte, Marcella Rietschel, Margarita Rivera, Andrea Roberts, Gloria Roberts, Guy A Rouleau, Diego L Rovaris, Dan Rujescu, Cristina Sánchez-Mora, Alan R Sanders, Peter R Schofield, Thomas G Schulze, Laura J Scott, Alessandro Serretti, Jianxin Shi, Stanley I Shyn, Lea Sirignano, Pamela Sklar, Olav B Smeland, Jordan W Smoller, Edmund J S Sonuga-Barke, Gianfranco Spalletta, John S Strauss, Beata Świątkowska, Maciej Trzaskowski, Gustavo Turecki, Laura Vilar-Ribó, John B Vincent, Henry Völzke, James T R Walters, Cynthia Shannon Weickert, Thomas W Weickert, Myrna M Weissman, Leanne M Williams, Naomi R Wray, Clement C Zai, Allison E Ashley-Koch, Jean C Beckham, Elizabeth R Hauser, Michael A Hauser, Nathan A Kimbrel, Jennifer H Lindquist, Benjamin McMahon, David W Oslin, Xuejun Qin, , , , , , , Esben Agerbo, Anders D Børglum, Gerome Breen, Annette Erlangsen, Tõnu Esko, Joel Gelernter, David M Hougaard, Ronald C Kessler, Henry R Kranzler, Qingqin S Li, Nicholas G Martin, Andrew M McIntosh, Ole Mors, Merete Nordentoft, Catherine M Olsen, David Porteous, Robert J Ursano, Danuta Wasserman, Thomas Werge, David C Whiteman, Cynthia M Bulik, Hilary Coon, Ditte Demontis, Anna R Docherty, Po-Hsiu Kuo, Cathryn M Lewis, J John Mann, Miguel E Rentería, Daniel J Smith, Eli A Stahl, Murray B Stein, Fabian Streit, Virginia Willour, Douglas M Ruderfer	Biological Psychiatry	2021-09-09	Abstract
Bacterial Cytological Profiling Identifies Rhodanine-Containing PAINS Analogs as Specific Inhibitors of Thymidylate Kinase .	Elizabeth T Montaño, Jason F Nideffer, Joseph Sugie, Eray Enustun, Adam B Shapiro, Hannah Tsunemoto, Alan I Derman, Kit Pogliano, Joe Pogliano	Journal Of Bacteriology	2021-09-08	Abstract
Gut microbiota alterations in response to sleep length among African-origin adults.	Na Fei, Candice Choo-Kang, Sirimon Reutrakul, Stephanie J Crowley, Dale Rae, Kweku Bedu-Addo, Jacob Plange-Rhule, Terrence E Forrester, Estelle V Lambert, Pascal Bovet, Walter Riesen, Wolfgang Korte, Amy Luke, Brian T Layden, Jack A Gilbert, Lara R Dugas	PloS One	2021-09-08	Abstract
Trivalent Subunit Vaccine Candidates for COVID-19 and Their Delivery Devices.	Oscar A Ortega-Rivera, Matthew D Shin, Angela Chen, Veronique Beiss, Miguel A Moreno-Gonzalez, Miguel A Lopez-Ramirez, Maria Reynoso, Hong Wang, Brett L Hurst, Joseph Wang, Jonathan K Pokorski, Nicole F Steinmetz	Journal Of The American Chemical Society	2021-09-07	Abstract
Vaccine genetics of IGHV1-2 VRC01-class broadly neutralizing antibody precursor naïve human B cells.	Jeong Hyun Lee, Laura Toy, Justin T Kos, Yana Safonova, William R Schief, Colin Havenar-Daughton, Corey T Watson, Shane Crotty	NPJ Vaccines	2021-09-06	Abstract
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes.	George W Armstrong, Kalen Cantrell, Shi Huang, Daniel McDonald, Niina Haiminen, Anna Paola Carrieri, Qiyun Zhu, Antonio Gonzalez, Imran McGrath, Kristen Beck, Daniel Hakim, Aki S Havulinna, Guillaume Méric, Teemu Niiranen, Leo Lahti, Veikko Salomaa, Mohit Jain, Michael Inouye, Austin D Swafford, Ho-Cheol Kim, Laxmi Parida, Yoshiki Vázquez-Baeza, Rob Knight	Genome Research	2021-09-03	Abstract
Resurgence of SARS-CoV-2 Infection in a Highly Vaccinated Health System Workforce.	Jocelyn Keehner, Lucy E Horton, Nancy J Binkin, Louise C Laurent, David Pride, Christopher A Longhurst, Shira R Abeles, Francesca J Torriani	The New England Journal Of Medicine	2021-09-01	Abstract
Making Sense of a Scent-Sensing Metaphor for Microbes and Environmental Predictions.	Jeff S Bowman	MSystems	2021-08-31	Abstract
Structure-Based Optimization of Quinazolines as Cruzain and CATL Inhibitors.	Elany Barbosa da Silva, Débora A Rocha, Isadora S Fortes, Wenqian Yang, Ludovica Monti, Jair L Siqueira-Neto, Conor R Caffrey, James McKerrow, Saulo F Andrade, Rafaela S Ferreira	Journal Of Medicinal Chemistry	2021-08-30	Abstract
Immunohistochemical and qPCR Detection of SARS-CoV-2 in the Human Middle Ear Versus the Nasal Cavity: Case Series.	Arwa Kurabi, Kwang Pak, Adam S DeConde, Allen F Ryan, Carol H Yan	Head And Neck Pathology	2021-08-28	Abstract
Airborne transmission of respiratory viruses.	Chia C Wang, Kimberly A Prather, Josué Sznitman, Jose L Jimenez, Seema S Lakdawala, Zeynep Tufekci, Linsey C Marr	Science (New York, N.Y.)	2021-08-27	Abstract
Decentralized vitamin C & D dual biosensor chip: Toward personalized immune system support.	Víctor Ruiz-Valdepeñas Montiel, Juliane R Sempionatto, Eva Vargas, Eileen Bailey, Jennifer May, Andrea Bulbarello, André Düsterloh, Nathan Matusheski, Joseph Wang	Biosensors & Bioelectronics	2021-08-26	Abstract
Continuous measurements of volatile gases as detection of algae crop health.	Jon S Sauer, Ryan Simkovsky, Alexia N Moore, Luis Camarda, Summer L Sherman, Kimberly A Prather, Robert S Pomeroy	Proceedings Of The National Academy Of Sciences Of The United States Of America	2021-08-25	Abstract
Antibody responses induced by SHIV infection are more focused than those induced by soluble native HIV-1 envelope trimers in non-human primates.	Jelle van Schooten, Marlies M van Haaren, Hui Li, Laura E McCoy, Colin Havenar-Daughton, Christopher A Cottrell, Judith A Burger, Patricia van der Woude, Leanne C Helgers, Ilhan Tomris, Celia C Labranche, David C Montefiori, Andrew B Ward, Dennis R Burton, John P Moore, Rogier W Sanders, Shane Crotty, George M Shaw, Marit J van Gils	PLoS Pathogens	2021-08-25	Abstract
Machine Learning of Bacterial Transcriptomes Reveals Responses Underlying Differential Antibiotic Susceptibility.	Anand V Sastry, Nicholas Dillon, Amitesh Anand, Saugat Poudel, Ying Hefner, Sibei Xu, Richard Szubin, Adam M Feist, Victor Nizet, Bernhard Palsson	MSphere	2021-08-25	Abstract
Relating sinking and suspended microbial communities in the California Current Ecosystem: Digestion resistance and the contributions of phytoplankton taxa to export.	Bellineth Valencia, Michael R Stukel, Andrew E Allen, John P McCrow, Ariel Rabines, Brian Palenik, Michael R Landry	Environmental Microbiology	2021-08-25	Abstract
Molecular Mirror Technology Facilitates High-Throughput, Accurate SARS-CoV-2 Testing.	Susan Realegeno, Sara Hash, Charlene Wong, Roland Liu, Jovan Shepherd, Robert T Schooley, David A Lipson, Frederick Fung, Suresh Menon, David T Pride	Microbiology Spectrum	2021-08-25	Abstract
Antibody secreting cells are critically dependent on integrin α4β7/MAdCAM-1 for intestinal recruitment and control of the microbiota during chronic colitis.	Christopher J Tyler, Mauricio Guzman, Luke R Lundborg, Shaila Yeasmin, Nadia Zgajnar, Paul Jedlicka, Giorgos Bamias, Jesús Rivera-Nieves	Mucosal Immunology	2021-08-25	Abstract
Aryl hydrocarbon receptor deficiency in intestinal epithelial cells aggravates alcohol-related liver disease.	Minyi Qian, Jun Liu, Danyang Zhao, Pengpeng Cai, Chuyue Pan, Wenxin Jia, Yingsheng Gao, Yufei Zhang, Nan Zhang, Yinan Zhang, Quan Zhang, Dalei Wu, Chengjie Shan, Meiling Zhang, Bernd Schnabl, Song Yang, Xu Shen, Lirui Wang	Cellular And Molecular Gastroenterology And Hepatology	2021-08-25	Abstract
Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo.	Ye Gao, Hyun Gyu Lim, Hans Verkler, Richard Szubin, Daniel Quach, Irina Rodionova, Ke Chen, James T Yurkovich, Byung-Kwan Cho, Bernhard O Palsson	Nucleic Acids Research	2021-08-24	Abstract
Early life gut microbiota is associated with rapid infant growth in Hispanics from Southern California.	Tanya L Alderete, Roshonda B Jones, Justin P Shaffer, Elizabeth A Holzhausen, William B Patterson, Elham Kazemian, Lida Chatzi, Rob Knight, Jasmine F Plows, Paige K Berger, Michael I Goran	Gut Microbes	2021-08-23	Abstract
Intestinal virome and therapeutic potential of bacteriophages in liver disease.	Cynthia Hsu, Yi Duan, Derrick E Fouts, Bernd Schnabl	Journal Of Hepatology	2021-08-23	Abstract
SARS-CoV-2 escape from a highly neutralizing COVID-19 convalescent plasma.	Emanuele Andreano, Giulia Piccini, Danilo Licastro, Lorenzo Casalino, Nicole V Johnson, Ida Paciello, Simeone Dal Monego, Elisa Pantano, Noemi Manganaro, Alessandro Manenti, Rachele Manna, Elisa Casa, Inesa Hyseni, Linda Benincasa, Emanuele Montomoli, Rommie E Amaro, Jason S McLellan, Rino Rappuoli	Proceedings Of The National Academy Of Sciences Of The United States Of America	2021-08-21	Abstract
An integrin αEβ7-dependent mechanism of IgA transcytosis requires direct plasma cell contact with intestinal epithelium.	Mauricio Guzman, Luke R Lundborg, Shaila Yeasmin, Christopher J Tyler, Nadia R Zgajnar, Vanessa Taupin, Katarzyna Dobaczewska, Zbigniew Mikulski, Giorgos Bamias, Jesús Rivera-Nieves	Mucosal Immunology	2021-08-20	Abstract
Glycocalyx crowding with mucin mimetics strengthens binding of soluble and virus-associated lectins to host cell glycan receptors.	Daniel J Honigfort, Meghan O Altman, Pascal Gagneux, Kamil Godula	Proceedings Of The National Academy Of Sciences Of The United States Of America	2021-08-19	Abstract
Identification of a transcription factor, PunR, that regulates the purine and purine nucleoside transporter punC in E. coli.	Irina A Rodionova, Ye Gao, Anand Sastry, Ying Hefner, Hyun Gyu Lim, Dmitry A Rodionov, Milton H Saier, Bernhard O Palsson	Communications Biology	2021-08-19	Abstract
Host DNA Depletion in Saliva Samples for Improved Shotgun Metagenomics.	Clarisse Marotz, Cristal Zuniga, Livia Zaramela, Rob Knight, Karsten Zengler	Methods In Molecular Biology (Clifton, N.J.)	2021-08-19	Abstract
A novel class of TMPRSS2 inhibitors potently block SARS-CoV-2 and MERS-CoV viral entry and protect human epithelial lung cells.	Matthew Mahoney, Vishnu C Damalanka, Michael A Tartell, Dong Hee Chung, André Luiz Lourenço, Dustin Pwee, Anne E Mayer Bridwell, Markus Hoffmann, Jorine Voss, Partha Karmakar, Nurit P Azouz, Andrea M Klingler, Paul W Rothlauf, Cassandra E Thompson, Melody Lee, Lidija Klampfer, Christina L Stallings, Marc E Rothenberg, Stefan Pöhlmann, Sean P J Whelan, Anthony J O'Donoghue, Charles S Craik, James W Janetka	Proceedings Of The National Academy Of Sciences Of The United States Of America	2021-08-18	Abstract
Acremonamide, a Cyclic Pentadepsipeptide with Wound-Healing Properties Isolated from a Marine-Derived Fungus of the Genus .	Sojeong Kim, Chang Wook Lee, So-Yeon Park, Ratnakar N Asolkar, Haerin Kim, Geum Jin Kim, Song Jin Oh, Youngbae Kim, Eun-Young Lee, Dong-Chan Oh, Inho Yang, Man Jeong Paik, Hyukjae Choi, Hangun Kim, Sang-Jip Nam, William Fenical	Journal Of Natural Products	2021-08-13	Abstract
Decreased Antibody Responses to Ad26.COV2.S Relative to SARS-CoV-2 mRNA Vaccines in Patients With Inflammatory Bowel Disease.	Valeriya Pozdnyakova, Gregory J Botwin, Kimia Sobhani, John Prostko, Jonathan Braun, Dermot P B Mcgovern, Gil Y Melmed, Keren Appel, Andrea Banty, Edward Feldman, Christina Ha, Rashmi Kumar, Susie Lee, Shervin Rabizadeh, Theodore Stein, Gaurav Syal, Stephan Targan, Eric Vasiliauskas, David Ziring, Philip Debbas, Melissa Hampton, Emebet Mengesha, James L Stewart, Edwin C Frias, Susan Cheng, Joseph Ebinger, Jane C Figueiredo, Brigid Boland, Aline Charabaty, Michael Chiorean, Erica Cohen, Ann Flynn, John Valentine, David Fudman, Arash Horizon, Jason Hou, Caroline Hwang, Mark Lazarev, Donald Lum, Rebecca Fausel, Swapna Reddy, Mark Mattar, Mark Metwally, Arthur Ostrov, Nimisha Parekh, Laura Raffals, Sarah Sheibani, Corey Siegel, Douglas Wolf, Ziad Younes	Gastroenterology	2021-08-12	Abstract
Microbiota and Fatty Liver Disease-the Known, the Unknown, and the Future.	Sonja Lang, Bernd Schnabl	Cell Host & Microbe	2021-08-12	Abstract
Risk factors for COVID-19 mortality in hospitalised children and adolescents in Brazil - Authors' reply.	Eduardo A Oliveira, Enrico A Colosimo, Ana Cristina Simões E Silva, Robert H Mak, Daniella B Martelli, Ludmila R Silva, Hercílio Martelli-Júnior, Maria Christina L Oliveira	The Lancet. Child & Adolescent Health	2021-08-10	Abstract
Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus.	Smruthi Karthikeyan, Andrew Nguyen, Daniel McDonald, Yijian Zong, Nancy Ronquillo, Junting Ren, Jingjing Zou, Sawyer Farmer, Greg Humphrey, Diana Henderson, Tara Javidi, Karen Messer, Cheryl Anderson, Robert Schooley, Natasha K Martin, Rob Knight	MSystems	2021-08-10	Abstract
Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM.	Aleksandar Antanasijevic, Leigh M Sewall, Christopher A Cottrell, Diane G Carnathan, Luis E Jimenez, Julia T Ngo, Jennifer B Silverman, Bettina Groschel, Erik Georgeson, Jinal Bhiman, Raiza Bastidas, Celia LaBranche, Joel D Allen, Jeffrey Copps, Hailee R Perrett, Kimmo Rantalainen, Fabien Cannac, Yuhe R Yang, Alba Torrents de la Peña, Rebeca Froes Rocha, Zachary T Berndsen, David Baker, Neil P King, Rogier W Sanders, John P Moore, Shane Crotty, Max Crispin, David C Montefiori, Dennis R Burton, William R Schief, Guido Silvestri, Andrew B Ward	Nature Communications	2021-08-10	Abstract
Clinical Practice Guideline by the Pediatric Infectious Diseases Society and the Infectious Diseases Society of America: 2021 Guideline on Diagnosis and Management of Acute Hematogenous Osteomyelitis in Pediatrics.	Charles R Woods, John S Bradley, Archana Chatterjee, Lawson A Copley, Joan Robinson, Matthew P Kronman, Antonio Arrieta, Sandra L Fowler, Christopher Harrison, Maria A Carrillo-Marquez, Sandra R Arnold, Stephen C Eppes, Laura P Stadler, Coburn H Allen, Lynnette J Mazur, C Buddy Creech, Samir S Shah, Theoklis Zaoutis, David S Feldman, Valéry Lavergne	Journal Of The Pediatric Infectious Diseases Society	2021-08-05	Abstract
Chemical Gradients of Plant Substrates in an Fungus Garden.	Andrés Mauricio Caraballo-Rodríguez, Sara P Puckett, Kathleen E Kyle, Daniel Petras, Ricardo da Silva, Louis-Félix Nothias, Madeleine Ernst, Justin J J van der Hooft, Anupriya Tripathi, Mingxun Wang, Marcy J Balunas, Jonathan L Klassen, Pieter C Dorrestein	MSystems	2021-08-03	Abstract
Variation in Microbial Exposure at the Human-Animal Interface and the Implications for Microbiome-Mediated Health Outcome.	Sahana Kuthyar, Aspen T Reese	MSystems	2021-08-03	Abstract
Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom.	Aaron Oliver, Sheila Podell, Agnieszka Pinowska, Jesse C Traller, Sarah R Smith, Ryan McClure, Alex Beliaev, Pavlo Bohutskyi, Eric A Hill, Ariel Rabines, Hong Zheng, Lisa Zeigler Allen, Alan Kuo, Igor V Grigoriev, Andrew E Allen, David Hazlebeck, Eric E Allen	Scientific Reports	2021-08-02	Abstract
Sleep Disturbances are a Significant Predictor of Chikungunya Arthritis Flare Severity.	Sarah R Tritsch, Richard Amdur, Liliana Encinales, Andres Cadena, Paige Fierbaugh, Geraldine Avendaño, Carlos Andres Herrera Gomez, Karol Suchowiecki, Evelyn Mendoza-Torres, Wendy Rosales, Dennys Jimenez, Carlos Alberto Perez Hernandez, Alfonso Sucerquia Hernandez, Paula Bruges Silvera, Yerlenis Galvis Crespo, Alberto David Cabana Jimenez, Jennifer Carolina Martinez Zapata, Christopher N Mores, Gary S Firestein, Gary Simon, Aileen Y Chang	Journal Of Cellular Immunology	2021-07-29	Abstract
Comparative genomic analysis of obligately piezophilic DB21MT-5 reveals bacterial adaptation to the Challenger Deep, Mariana Trench.	Wei-Jia Zhang, Chan Zhang, Siyu Zhou, Xue-Gong Li, Sophie Mangenot, Stéphanie Fouteau, Thomas Guerin, Xiao-Qing Qi, Jian Yang, Douglas H Bartlett, Long-Fei Wu	Microbial Genomics	2021-07-28	Abstract
Oxitec and MosquitoMate in the United States: lessons for the future of gene drive mosquito control.	Cynthia E Schairer, James Najera, Anthony A James, Omar S Akbari, Cinnamon S Bloss	Pathogens And Global Health	2021-07-27	Abstract
Dietary selection pressures and their impact on the gut microbiome.	Gertrude Ecklu-Mensah, Jack Gilbert, Suzanne Devkota	Cellular And Molecular Gastroenterology And Hepatology	2021-07-27	Abstract
Emergence of an early SARS-CoV-2 epidemic in the United States.	Mark Zeller, Karthik Gangavarapu, Catelyn Anderson, Allison R Smither, John A Vanchiere, Rebecca Rose, Daniel J Snyder, Gytis Dudas, Alexander Watts, Nathaniel L Matteson, Refugio Robles-Sikisaka, Maximilian Marshall, Amy K Feehan, Gilberto Sabino-Santos, Antoinette R Bell-Kareem, Laura D Hughes, Manar Alkuzweny, Patricia Snarski, Julia Garcia-Diaz, Rona S Scott, Lilia I Melnik, Raphaëlle Klitting, Michelle McGraw, Pedro Belda-Ferre, Peter DeHoff, Shashank Sathe, Clarisse Marotz, Nathan D Grubaugh, David J Nolan, Arnaud C Drouin, Kaylynn J Genemaras, Karissa Chao, Sarah Topol, Emily Spencer, Laura Nicholson, Stefan Aigner, Gene W Yeo, Lauge Farnaes, Charlotte A Hobbs, Louise C Laurent, Rob Knight, Emma B Hodcroft, Kamran Khan, Dahlene N Fusco, Vaughn S Cooper, Phillipe Lemey, Lauren Gardner, Susanna L Lamers, Jeremy P Kamil, Robert F Garry, Marc A Suchard, Kristian G Andersen	Cell	2021-07-27	Abstract
ACE2 Receptor-Modified Algae-Based Microrobot for Removal of SARS-CoV-2 in Wastewater.	Fangyu Zhang, Zhengxing Li, Lu Yin, Qiangzhe Zhang, Nelly Askarinam, Rodolfo Mundaca-Uribe, Farshad Tehrani, Emil Karshalev, Weiwei Gao, Liangfang Zhang, Joseph Wang	Journal Of The American Chemical Society	2021-07-22	Abstract
Forming Consensus To Advance Urobiome Research.	Linda Brubaker, Jean-Philippe F Gourdine, Nazema Y Siddiqui, Amanda Holland, Thomas Halverson, Roberto Limeria, David Pride, Lenore Ackerman, Catherine S Forster, Kristin M Jacobs, Krystal J Thomas-White, Catherine Putonti, Qunfeng Dong, Michael Weinstein, Emily S Lukacz, Lisa Karstens, Alan J Wolfe	MSystems	2021-07-20	Abstract
Nutritional Interventions and the Gut Microbiome in Children.	Saurabh Mehta, Samantha L Huey, Daniel McDonald, Rob Knight, Julia L Finkelstein	Annual Review Of Nutrition	2021-07-20	Abstract
Association Between the Urogenital Microbiome and Surgical Treatment Response in Women Undergoing Mid-urethral Sling Surgery for Mixed Urinary Incontinence.	Holly E Richter, Megan U Carnes, Yuko M Komesu, Emily S Lukacz, Lily Arya, Megan Bradley, Rebecca G Rogers, Vivian W Sung, Nazema Y Siddiqui, Benjamin Carper, Donna Mazloomdoost, Darryl Dinwiddie, Marie G Gantz,	American Journal Of Obstetrics And Gynecology	2021-07-20	Abstract
Special Collection on the Microbiome and Infection.	Manuela Raffatellu, Andreas J Bäumler	Infection And Immunity	2021-07-19	Abstract
Comparison of heat-inactivated and infectious SARS-CoV-2 across indoor surface materials shows comparable RT-qPCR viral signal intensity and persistence.	Rodolfo A Salido, Victor J Cantú, Alex E Clark, Sandra L Leibel, Anahid Foroughishafiei, Anushka Saha, Abbas Hakim, Alhakam Nouri, Alma L Lastrella, Anelizze Castro-Martínez, Ashley Plascencia, Bhavika Kapadia, Bing Xia, Christopher Ruiz, Clarisse A Marotz, Daniel Maunder, Elijah S Lawrence, Elizabeth W Smoot, Emily Eisner, Evelyn S Crescini, Laura Kohn, Lizbeth Franco Vargas, Marisol Chacón, Maryann Betty, Michal Machnicki, Min Yi Wu, Nathan A Baer, Pedro Belda-Ferre, Peter De Hoff, Phoebe Seaver, R Tyler Ostrander, Rebecca Tsai, Shashank Sathe, Stefan Aigner, Sydney C Morgan, Toan T Ngo, Tom Barber, Willi Cheung, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Rebecca Fielding-Miller, Rob Knight	BioRxiv : The Preprint Server For Biology	2021-07-19	Abstract
Dynamic Changes of the Fungal Microbiome in Alcohol Use Disorder.	Phillipp Hartmann, Sonja Lang, Suling Zeng, Yi Duan, Xinlian Zhang, Yanhan Wang, Marina Bondareva, Andrey Kruglov, Derrick E Fouts, Peter Stärkel, Bernd Schnabl	Frontiers In Physiology	2021-07-19	Abstract
Portobelamides A and B and Caciqueamide, Cytotoxic Peptidic Natural Products from a sp. Marine Cyanobacterium.	Ozlem Demirkiran, Jehad Almaliti, Tiago Leão, Gabriel Navarro, Tara Byrum, Frederick A Valeriote, Lena Gerwick, William H Gerwick	Journal Of Natural Products	2021-07-16	Abstract
The microbiome and prostate cancer.	Juan Javier-DesLoges, Rana R McKay, Austin D Swafford, Gregory D Sepich-Poore, Rob Knight, J Kellogg Parsons	Prostate Cancer And Prostatic Diseases	2021-07-15	Abstract
A Pilot Study of Microbial Succession in Human Rib Skeletal Remains during Terrestrial Decomposition.	Heather Deel, Alexandra L Emmons, Jennifer Kiely, Franklin E Damann, David O Carter, Aaron Lynne, Rob Knight, Zhenjiang Zech Xu, Sibyl Bucheli, Jessica L Metcalf	MSphere	2021-07-14	Abstract
HIV vaccinology: 2021 update.	Jeong Hyun Lee, Shane Crotty	Seminars In Immunology	2021-07-13	Abstract
A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity.	Gongchao Jing, Yufeng Zhang, Lu Liu, Zengbin Wang, Zheng Sun, Rob Knight, Xiaoquan Su, Jian Xu	MSystems	2021-07-13	Abstract
Artificial intelligence guided discovery of a barrier-protective therapy in inflammatory bowel disease.	Debashis Sahoo, Lee Swanson, Ibrahim M Sayed, Gajanan D Katkar, Stella-Rita Ibeawuchi, Yash Mittal, Rama F Pranadinata, Courtney Tindle, Mackenzie Fuller, Dominik L Stec, John T Chang, William J Sandborn, Soumita Das, Pradipta Ghosh	Nature Communications	2021-07-12	Abstract
Quick-start infrastructure for untargeted metabolomics analysis in GNPS.	Tiago F Leao, Chase M Clark, Anelize Bauermeister, Emmanuel O Elijah, Emily C Gentry, Makhai Husband, Michelli F Oliveira, Nuno Bandeira, Mingxun Wang, Pieter C Dorrestein	Nature Metabolism	2021-07-09	Abstract
Publisher Correction: Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery.	Bahar Behsaz, Edna Bode, Alexey Gurevich, Yan-Ni Shi, Florian Grundmann, Deepa Acharya, Andrés Mauricio Caraballo-Rodríguez, Amina Bouslimani, Morgan Panitchpakdi, Annabell Linck, Changhui Guan, Julia Oh, Pieter C Dorrestein, Helge B Bode, Pavel A Pevzner, Hosein Mohimani	Nature Communications	2021-07-08	Abstract
Genome-wide CRISPR/Cas9 screening in human iPS derived cardiomyocytes uncovers novel mediators of doxorubicin cardiotoxicity.	Valerie Sapp, Aitor Aguirre, Gayatri Mainkar, Jeffrey Ding, Eric Adler, Ronglih Liao, Sonia Sharma, Mohit Jain	Scientific Reports	2021-07-06	Abstract
Ruminiclostridium 5, Parabacteroides distasonis, and bile acid profile are modulated by prebiotic diet and associate with facilitated sleep/clock realignment after chronic disruption of rhythms.	Robert S Thompson, Michelle Gaffney, Shelby Hopkins, Tel Kelley, Antonio Gonzalez, Samuel J Bowers, Martha Hotz Vitaterna, Fred W Turek, Christine L Foxx, Christopher A Lowry, Fernando Vargas, Pieter C Dorrestein, Kenneth P Wright, Rob Knight, Monika Fleshner	Brain, Behavior, And Immunity	2021-07-06	Abstract
Microbiome is not linked to clinical disease severity of familial Mediterranean fever in an international cohort of children.	Seza Ozen, Holly L Lutz, Vanessa M Rivera, Andreas Reiff, Ezgi Deniz Batu, Edwin Anderson, Mariana Salas Garcia, Grace Aldrovandi, Tayfun Hilmi Akbaba, İlker Pazarbasi, Yelda Bilginer, Ayse Balat, Banu Balci-Peynircioglu, Jack A Gilbert, Fatma Dedeoglu, Jonathan S Hausmann	Clinical And Experimental Rheumatology	2021-07-05	Abstract
Impact of SARS-CoV-2 variants on the total CD4 and CD8 T cell reactivity in infected or vaccinated individuals.	Alison Tarke, John Sidney, Nils Methot, Esther Dawen Yu, Yun Zhang, Jennifer M Dan, Benjamin Goodwin, Paul Rubiro, Aaron Sutherland, Eric Wang, April Frazier, Sydney I Ramirez, Stephen A Rawlings, Davey M Smith, Ricardo da Silva Antunes, Bjoern Peters, Richard H Scheuermann, Daniela Weiskopf, Shane Crotty, Alba Grifoni, Alessandro Sette	Cell Reports. Medicine	2021-07-02	Abstract
Gut Microbiota in Liver Disease: What Do We Know and What Do We Not Know?	Lu Jiang, Bernd Schnabl	Physiology (Bethesda, Md.)	2021-07-01	Abstract
Display of the human mucinome with defined O-glycans by gene engineered cells.	Rebecca Nason, Christian Büll, Andriana Konstantinidi, Lingbo Sun, Zilu Ye, Adnan Halim, Wenjuan Du, Daniel M Sørensen, Fabien Durbesson, Sanae Furukawa, Ulla Mandel, Hiren J Joshi, Leo Alexander Dworkin, Lars Hansen, Leonor David, Tina M Iverson, Barbara A Bensing, Paul M Sullam, Ajit Varki, Erik de Vries, Cornelis A M de Haan, Renaud Vincentelli, Bernard Henrissat, Sergey Y Vakhrushev, Henrik Clausen, Yoshiki Narimatsu	Nature Communications	2021-07-01	Abstract
The Relationships between HIV-1 Infection, History of Methamphetamine Use Disorder, and Soluble Biomarkers in Blood and Cerebrospinal Fluid.	T Jordan Walter, Jennifer Iudicello, Debra Rosario Cookson, Donald Franklin, Bin Tang, Jared W Young, William Perry, Ronald Ellis, Robert K Heaton, Igor Grant, Arpi Minassian, Scott Letendre, On Behalf Of The Translational Methamphetamine Aids Research Center Tmarc	Viruses	2021-07-01	Abstract
Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome.	Shi Huang, Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu, Pedro Belda-Ferre, Yoshiki Vázquez-Baeza, Qiyun Zhu, Chenchen Ma, Congfa Li, Amir Zarrinpar, Yang-Yu Liu, Rob Knight, Jiachao Zhang	Microbiome	2021-06-30	Abstract
Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome.	Celeste Allaband, Amulya Lingaraju, Cameron Martino, Baylee Russell, Anupriya Tripathi, Orit Poulsen, Ana Carolina Dantas Machado, Dan Zhou, Jin Xue, Emmanuel Elijah, Atul Malhotra, Pieter C Dorrestein, Rob Knight, Gabriel G Haddad, Amir Zarrinpar	MSystems	2021-06-29	Abstract
The neglected brothers come of age: B cells and cancer.	Shabnam Shalapour, Michael Karin	Seminars In Immunology	2021-06-29	Abstract